Citrus Sinensis ID: 005412

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------
Protein Sequence
MQGQGSTIDSFPESVNIDQDSVSSNTSMSQQISVDSILQPVESRLSNYTVASGGATCVNAVTHDVRNLSTWNSGEPSCRLSLQNQKNDDEMKMEHGWSASCSARTGGGPVSEERQRESTSILFPGRHGIGHSGNQDRSGPSFSLGSSSSHSPQNLDLDAGYVDNSGFGGQSMEVGLGPNLRNSGGLETEQAYLASASSDKVGTSSGSSGFMLEENNGEAGSPLGGWGLSCKRKALEGTSAPSCSAGSSSRFPQAESGVSARYEASSSLSLSPPLQNYPSVCPPEQSNPRFGVAMRIVEDGFPSGISGNTENRLRSFGRRGDPRHQQESVPYNLSSIGGSGHSNIAPPHPPPISLPFSDALELRAAAAVAANTNASQNQAHSAPVSSFSRNAHPFRWDGASSSRAGNLSSSFISGERGATLREERNTRSIQRNNAEHPMLVPSAEMRNMVQDPTSWSLATGSSSGGVSSTARIGSSSSTHPSPASAWVPHHNISIHSPSSSSQEPVMPSSSNSQIHHQTQRRSSFLMERQGDNVLGLPRSLQVLAADIEGRHRLISEIRQVLNAMRRGENLRVEDYMLFEPFIYHGLAEMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLNEETIMKIMKQKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLPT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccHHHccHHHHHHHccccccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHcccccccccccccccccccHHcccccHHcccccccccccccccccccccccccccccccccccccccHHccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccHHHHHHHHHHHHccccccHHHHEEcccHHHcccccccccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHcccEccccccccccccccEEEEEHHccccccEEEEcccccHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
mqgqgstidsfpesvnidqdsvssntsmsqqisvdsilqpvesrlsnytvasggatCVNAVthdvrnlstwnsgepscrlslqnqknddemkmehgwsascsartgggpvseerqrestsilfpgrhgighsgnqdrsgpsfslgsssshspqnldldagyvdnsgfggqsmevglgpnlrnsggletEQAYLASassdkvgtssgssgfmleenngeagsplggwglsckrkalegtsapscsagsssrfpqaesgvsaryeassslslspplqnypsvcppeqsnprfgVAMRIVedgfpsgisgntenrlrsfgrrgdprhqqesvpynlssiggsghsniapphpppislpfsDALELRAAAAVAANtnasqnqahsapvssfsrnahpfrwdgasssragnlsssfisgergatlrEERNTRsiqrnnaehpmlvpsaemrnmvqdptswslatgsssggvsstarigssssthpspasawvphhnisihspssssqepvmpsssnsqihhqTQRRSSFLmerqgdnvlglprSLQVLAADIEGRHRLISEIRQVLNAMRrgenlrvedymlfepfiyhglaemhdrhrdmrldvdnmSYEELLALEERIgdvstglnEETIMKIMkqkrypsleieipsdeepccicqeeytdgdnlgildcghdfhtNCIKQWLmqknlcpickttglpt
Flexible Loop (DISEMBL)
mqgqgstidsfpesvnIDQDSVSSNTSMSQQISVDSILQPVESRLSNYTVASGGATCVNAVTHDVRnlstwnsgepscRLSLQNQKNDDEMKMEHGWSASCSARTGGGPVSEERQRESTSILFPGRHGIGHSGNQDRSGPSFSLGSSSSHSPQNLDLDAGYVDNSGFGGQSMEVGLGPNLRNSGGLETEQAYLASASSDKVGTSSGSSGFMLEENNGEAGSPLGGWGLSCKRKALEGTsapscsagsssrfpqAESGVSARYEASSSLSLSPPLQNYPSVCPPEQSNPRFGVAMRIVEDGfpsgisgntenRLRSFgrrgdprhqqeSVPYNLSSIGGSGHSNIAPPHPPPISLPFSDALELRAAAAVAANTNASQNQAHSAPVSSFSRNAHPFRWDGasssragnlsssfisgergatlreerntrsiqrnnaehpmlvpSAEMRNMVQDPTSWSLATGSSSGGVSSTARIGSSSSTHPSPASAWVPHHNISIHSPSSSSQEPVMPSSSNSQIHHQTQRRSSFLMERQGDNVLGLPRSLQVLAADIEGRHRLISEIRQVLNAMRRGENLRVEDYMLFEPFIYHGLAEMHDRHRDMRLDVDNMSYEELLALEerigdvstglNEETIMKIMKQKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLPT
Low Complexity Region (SEG)
MQGQGSTIDSFPESVNIDQDSVSSNTSMSQQISVDSILQPVESRLSNYTVASGGATCVNAVTHDVRNLSTWNSGEPSCRLSLQNQKNDDEMKMEHGWSASCSARTGGGPVSEERQRESTSILFPGRHGIGHSGNQDRsgpsfslgsssshspQNLDLDAGYVDNSGFGGQSMEVGLGPNLRNSGGLETEQAYLAsassdkvgtssgssgFMLEENNGEAGSPLGGWGLSCKRKALEGTsapscsagsssRFPQAESGVSARYEAssslslspplQNYPSVCPPEQSNPRFGVAMRIVEDGFPSGISGNTENRLRSFGRRGDPRHQQESVPYNLSSIGGSGHSNIApphpppISLPFSDALELRaaaavaantnasqnqahsaPVSSFSRNAHPFRWDgasssragnlsssFISGERGATLREERNTRSIQRNNAEHPMLVPSAEMRNMVQDPTSWSLATgsssggvsstarigssssthpspasaWVPHHNIsihspssssqepvmpsssnsQIHHQTQRRSSFLMERQGDNVLGLPRSLQVLAADIEGRHRLISEIRQVLNAMRRGENLRVEDYMLFEPFIYHGLAEMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLNEETIMKIMKQKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLPT
Disordered region (IsUnstruct)
*******************************************RLSNYTVASGGATCVNAVTHDVRNLSTW*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************VLGLPRSLQVLAADIEGRHRLISEIRQVLNAMRRGENLRVEDYMLFEPFIYHGLAEMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLNEETIMKIMKQKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT*****
Disordered Region (DISOPRED)
***********PESV*******************DSILQPVESR****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************LFEPFIYHGLAEMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLNEETIMKIMKQKR**********DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP*
Disordered Region (DISEMBL)
MQGQGSTIDSFPESVNID***************VDSILQPVESRLSNYTVASGGATCVNAVTHDVRNLSTWNSGEPSCRLSLQNQKNDDEMKMEHGWSAS******************TSILFPGRHGIG*********************PQNLDLDAGYVDNSGFGGQSMEVGLGPNLRNSGGLETEQAYLA************SSGFMLEENNGEAGSPLGGWGLSCKRKAL**********************************LSPPLQNYPSVCPPEQSNPRFGVAMRIVEDGFPSGISGNTENRLRSFGRRGDPRHQQESVPYNLSSIGGSGHSNIAPPHPPPISLPFSDALELRAAAAVA****************SFSRNAHPFRWDGASSSRAGNLSSSFISGERGATLREERNTRSIQRNNAEHPMLVPSAEMRNMVQDPTSWS****************************AWVPHHNISI****************************SFLMERQGDNVLGLPRSLQVLAADIEGRHRLISEIRQVLNAMRRGENLRVEDYMLFEPFIYHGLAEMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLNEETIMKIMKQKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLPT
Disordered Region (DISPRO)
**************************SMSQQISVDSILQPVESRLSNYTVASGGATCVNAVTHDVRNLSTWNSGEPS********KNDDEMKMEHGWSASCSARTGGGPVSEERQRESTSILFPGRHGIGHSGNQDRSGPSFSLGSSSSHSPQNLDLDAGYVD**********V*L****************************************************************************************************YPSVCPPE*SN*****************************************VP*************************FSDALELRAAAAV*******************************************************************HPM****************************************HPSPASAWV********************************************NVLGLPRSLQVLAADIEGRHRLISEIRQVLNAMRRGENLRVEDYMLFEPFIYHGLAEMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLNEETIMKIMKQKRYPSL*I**PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQGQGSTIDSFPESVNIDQDSVSSNTSMSQQISVDSILQPVESRLSNYTVASGGATCVNAVTHDVRNLSTWNSGEPSCRLSLQNQKNDDEMKMEHGWSASCSARTGGGPVSEERQRESTSILFPGRHGIGHSGNQDRSGPSFSLGSSSSHSPQNLDLDAGYVDNSGFGGQSMEVGLGPNLRNSGGLETEQAYLASASSDKVGTSSGSSGFMLEENNGEAGSPLGGWGLSCKRKALEGTSAPSCSAGSSSRFPQAESGVSARYEASSSLSLSPPLQNYPSVCPPEQSNPRFGVAMRIVEDGFPSGISGNTENRLRSFGRRGDPRHQQESVPYNLSSIGGSGHSNIAPPHPPPISLPFSDALELRAAAAVAANTNASQNQAHSAPVSSFSRNAHPFRWDGASSSRAGNLSSSFISGERGATLREERNTRSIQRNNAEHPMLVPSAEMRNMVQDPTSWSLATGSSSGGVSSTARIGSSSSTHPSPASAWVPHHNISIHSPSSSSQEPVMPSSSNSQIHHQTQRRSSFLMERQGDNVLGLPRSLQVLAADIEGRHRLISEIRQVLNAMRRGENLRVEDYMLFEPFIYHGLAEMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLNEETIMKIMKQKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLPT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	697	2.2.26 [Sep-21-2011]
Q9LT17	340	E3 ubiquitin ligase BIG B	no	no	0.131	0.270	0.393	6e-13
Q6ZSG1	346	RING finger protein 165 O	yes	no	0.127	0.257	0.363	3e-11
E9QAU8	347	RING finger protein 165 O	yes	no	0.127	0.256	0.363	3e-11
Q8L649	248	E3 ubiquitin ligase BIG B	no	no	0.134	0.379	0.364	3e-10
Q7L0R7	432	RING finger protein 44 OS	no	no	0.133	0.215	0.34	4e-10
Q5R476	986	E3 ubiquitin-protein liga	yes	no	0.126	0.089	0.329	7e-10
Q0V9R0	954	E3 ubiquitin-protein liga	yes	no	0.133	0.097	0.309	8e-10
Q6NRV8	959	E3 ubiquitin-protein liga	N/A	no	0.133	0.096	0.309	8e-10
Q90ZT7	923	E3 ubiquitin-protein liga	N/A	no	0.133	0.100	0.309	8e-10
Q66J97	967	E3 ubiquitin-protein liga	N/A	no	0.133	0.096	0.309	8e-10

>sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana GN=BBR PE=2 SV=1

 Score = 76.6 bits (187), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 2/94 (2%)

Query: 597 RLDVDNMSYEELLALEERIGDVSTGLNEETIMKIMKQKRYPSLEIEIPSDEEPCCICQEE 656
            +D D +SYEELLAL + +G  S GL+ +TI   +  KRY   + +  ++E  C IC+ +
Sbjct: 237 EMDPDELSYEELLALGDIVGTESRGLSADTIAS-LPSKRYKEGDNQNGTNE-SCVICRLD 294

Query: 657 YTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPIC 690
           Y D ++L +L C H +H+ CI  WL    +CP+C
Sbjct: 295 YEDDEDLILLPCKHSYHSECINNWLKINKVCPVC 328

E3 ubiquitin-ligase probably involved in organ size regulation.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1

 Score = 70.9 bits (172), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 604 SYEELLALEERIGDVSTGLNEETIMKIMKQKRYPSL----------EIEIPSDEEPCCIC 653
           SYEELL LE+R+G+V+ G  + TI +     +Y             E E    +E C IC
Sbjct: 238 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDGKGKKDEGEESDTDEKCTIC 297

Query: 654 QEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT 692
                DG+++  L C H FH  C+ QWL     CPIC+ 
Sbjct: 298 LSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRV 336

Homo sapiens (taxid: 9606)

>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 604 SYEELLALEERIGDVSTGLNEETIMKIMKQKRYPSL----------EIEIPSDEEPCCIC 653
           SYEELL LE+R+G+V+ G  + TI +     +Y             E E    +E C IC
Sbjct: 239 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDSKGKKDEGEESDTDEKCTIC 298

Query: 654 QEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT 692
                DG+++  L C H FH  C+ QWL     CPIC+ 
Sbjct: 299 LSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRV 337

Mus musculus (taxid: 10090)

>sp|Q8L649|BB_ARATH E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1 SV=1

 Score = 67.8 bits (164), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 2/96 (2%)

Query: 598 LDVDNMSYEELLALEERIGDVSTGLNEETIMKI-MKQKRYPSLEIEIPSDEEPCCICQEE 656
           +D D M+YEEL+ L E +G  S GL++E I  +  K+ ++ S+     + E  C ICQ +
Sbjct: 145 IDPDTMTYEELVELGEAVGTESRGLSQELIETLPTKKYKFGSIFSRKRAGER-CVICQLK 203

Query: 657 YTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT 692
           Y  G+    L C H +H+ CI +WL    +CP+C +
Sbjct: 204 YKIGERQMNLPCKHVYHSECISKWLSINKVCPVCNS 239

E3 ubiquitin-ligase that limits organ size, and possibly seed size, in a dose-dependent manner. Negatively regulates the duration of cell proliferation in leaves and petals independently of the major phytohormones (e.g. auxin, cytokinin, gibberellin, brassinosteroids, ethylene, abscisic acid, jasmonic acid), probably by targeting growth stimulators for degradation.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 7/100 (7%)

Query: 596 MRLDVDNM---SYEELLALEERIGDVST-GLNEETIMKIMKQKRYPSLEIEIPSDEEPCC 651
           + LDVD++   +YE LL L ER+GD    GL +  I ++   +  P       S++  C 
Sbjct: 325 LDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQ---SEQTLCV 381

Query: 652 ICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 691
           +C  ++     L +L C H+FHT C+ +WL     CPIC+
Sbjct: 382 VCFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICR 421

Homo sapiens (taxid: 9606)

>sp|Q5R476|RN111_PONAB E3 ubiquitin-protein ligase Arkadia OS=Pongo abelii GN=RNF111 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 9/97 (9%)

Query: 605 YEELLALEERIGDVSTGLNEETIMKIMKQKRYPSLEIEIP---------SDEEPCCICQE 655
           +EEL+ LEER+G+V+ G ++ TI +     +Y   ++              EE C IC  
Sbjct: 880 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKRKLHCKQDGEEGTEEDTEEKCTICLS 939

Query: 656 EYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT 692
              +G+++  L C H FH  C+ QWL+    CPIC+ 
Sbjct: 940 ILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRV 976

Acts in the NODAL pathway of mesoderm patterning during embryonic development. Acts downstream AXIN1 as an E3 ubiquitin-protein ligase which promotes the ubiquitination of inhibitory SMADs such as SMAD7, induces their proteasomal degradation and thereby enhances the transcriptional activity of TGF-beta and BMP. Activates Smad3/Smad4-dependent transcription by triggering signal-induced SnoN degradation.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia OS=Xenopus tropicalis GN=rnf111 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 20/113 (17%)

Query: 605 YEELLALEERIGDVSTGLNEETIMKIMKQKRYPSLEIEIPSDEE---------------- 648
           +EEL+ LEER+G+V+ G ++ TI +     +Y  +  +  S  +                
Sbjct: 840 FEELIHLEERLGNVNRGASQGTIERCTYPHKYEKVSTDWFSQRKLHSKQDGEEATEEDTE 899

Query: 649 -PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT---TGLPT 697
             C IC     +G+++  L C H FH  C+ QWL+    CPIC+    T LPT
Sbjct: 900 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIDTQLPT 952

Acts in the nodal-related pathway of mesoderm patterning during embryonic development. Enhances signaling of the subset of TGF-beta factors responsible for the formation of dorso-anterior tissues of Spemann's organizer. May act as an E3 ubiquitin-protein ligase, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6NRV8|R111B_XENLA E3 ubiquitin-protein ligase arkadia-B OS=Xenopus laevis GN=rnf111-b PE=2 SV=1

 Score = 66.2 bits (160), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 20/113 (17%)

Query: 605 YEELLALEERIGDVSTGLNEETIMKIMKQKRYPSLEIEIPSDEE---------------- 648
           +EEL+ LEER+G+V+ G ++ TI +     +Y  +  +  S  +                
Sbjct: 845 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEATEEDTE 904

Query: 649 -PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT---TGLPT 697
             C IC     +G+++  L C H FH  C+ QWL+    CPIC+    T LPT
Sbjct: 905 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIDTQLPT 957

Acts in the nodal-related pathway of mesoderm patterning during embryonic development. Enhances signaling of the subset of TGF-beta factors responsible for the formation of dorso-anterior tissues of Spemann's organizer. May act as an E3 ubiquitin-protein ligase, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q90ZT7|R111A_XENLA E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis GN=rnf111-a PE=2 SV=1

 Score = 66.2 bits (160), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 20/113 (17%)

Query: 605 YEELLALEERIGDVSTGLNEETIMKIMKQKRYPSLEIEIPSDEE---------------- 648
           +EEL+ LEER+G+V+ G ++ TI +     +Y  +  +  S  +                
Sbjct: 809 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEAPEEDTE 868

Query: 649 -PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT---TGLPT 697
             C IC     +G+++  L C H FH  C+ QWL+    CPIC+    T LPT
Sbjct: 869 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIDTQLPT 921

Acts in the nodal-related pathway of mesoderm patterning during embryonic development. Enhances signaling of the subset of TGF-beta factors responsible for the formation of dorso-anterior tissues of Spemann's organizer. May act as an E3 ubiquitin-protein ligase, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q66J97|R111C_XENLA E3 ubiquitin-protein ligase arkadia-C OS=Xenopus laevis GN=rnf111-c PE=2 SV=1

 Score = 66.2 bits (160), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 20/113 (17%)

Query: 605 YEELLALEERIGDVSTGLNEETIMKIMKQKRYPSLEIEIPSDEE---------------- 648
           +EEL+ LEER+G+V+ G ++ TI +     +Y  +  +  S  +                
Sbjct: 853 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEAPEEDTE 912

Query: 649 -PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT---TGLPT 697
             C IC     +G+++  L C H FH  C+ QWL+    CPIC+    T LPT
Sbjct: 913 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIDTQLPT 965

Acts in the nodal-related pathway of mesoderm patterning during embryonic development. Enhances signaling of the subset of TGF-beta factors responsible for the formation of dorso-anterior tissues of Spemann's organizer. May act as an E3 ubiquitin-protein ligase, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	697
225428847	734	PREDICTED: uncharacterized protein LOC10	0.978	0.929	0.547	1e-180
255555411	734	protein binding protein, putative [Ricin	0.968	0.919	0.531	1e-170
356519717	715	PREDICTED: uncharacterized protein LOC10	0.979	0.955	0.466	1e-160
356502509	720	PREDICTED: uncharacterized protein LOC10	0.979	0.948	0.452	1e-151
225458665	734	PREDICTED: uncharacterized protein LOC10	0.985	0.935	0.460	1e-146
147845456	1022	hypothetical protein VITISV_042276 [Viti	0.985	0.672	0.459	1e-146
147821644	553	hypothetical protein VITISV_022802 [Viti	0.723	0.911	0.567	1e-142
357475291	669	RING finger protein [Medicago truncatula	0.905	0.943	0.452	1e-139
255538248	709	protein binding protein, putative [Ricin	0.952	0.936	0.413	1e-126
357475293	557	RING finger protein [Medicago truncatula	0.744	0.931	0.481	1e-123

>gi|225428847|ref|XP_002282377.1| PREDICTED: uncharacterized protein LOC100258840 [Vitis vinifera]

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 410/749 (54%), Positives = 505/749 (67%), Gaps = 67/749 (8%)

Query: 1   MQGQGSTIDSFPESVNIDQDSVSSNTSMSQQISVDSILQPVESRLSNYTVASGGA--TCV 58
           MQGQ STI SF E+++  Q SVS+NT M+QQ S +++L PV+SRLSNY + S  A  TCV
Sbjct: 1   MQGQRSTIGSFSETIDFGQGSVSNNTGMNQQTSWNNMLNPVDSRLSNYMLPSNEANFTCV 60

Query: 59  NAVTHDVRNLSTWNSGEPSCRLSLQNQKNDDEMKMEHGWSASCSARTGGGPVSEERQRES 118
           NAV HDV+N + W+ GE S  ++ +NQ  +  ++MEHG S+S +   G  P  E+R+ + 
Sbjct: 61  NAVNHDVQNFNGWHLGESSSSMNPRNQAINAGVRMEHGRSSSGTL-AGADPNLEDRRLDL 119

Query: 119 TSILFPGRHGIGHSGNQDRSGPSFSLGSSSSHSPQNLDLDAGYVDNSGFGGQSMEVGLGP 178
            +      H    SGNQ   GP F  GSSS+  P N++L+A  V NSG GGQ M  GL  
Sbjct: 120 ANSPL---HESATSGNQITRGPLFIRGSSSTRIPLNVNLNAEIVGNSGSGGQEMGAGLC- 175

Query: 179 NLRNSGGLETEQAYLASASSDKVGTSSGSSGFMLEENNGEAGSPLGGWGLSCKRKALEGT 238
               SGGL TEQ    SAS+D +G SSGSSG ++EE+NG +GS LG WGLSCKRKALEGT
Sbjct: 176 ---KSGGLGTEQVSPVSASADNIGASSGSSGSLIEESNGGSGSSLGSWGLSCKRKALEGT 232

Query: 239 SAPSCSAGSSSRFPQAES----GVSARYEASSSLSLSPPLQNYPSVCPPEQSNPRFGVAM 294
           S  S  +GSSS  PQAE      V A   AS+S S+S P  N  SV PP   N + G+ M
Sbjct: 233 SGQSYPSGSSSCSPQAEPSAWLAVPAHSNASNSSSISTPSGNSLSVNPPGLPNQQSGIGM 292

Query: 295 RIV--EDGFPS-GISGNTENRLRSFGRRGDPRHQQESVPYNLSSIGGSGHSNIAPPHPPP 351
           R V   D FPS  ++GN EN  R+FGRR +P HQQE V +NLSS G +  SN++  H   
Sbjct: 293 RGVAPSDVFPSLSVTGNAENSQRNFGRRVNPGHQQEPVAFNLSSAGITRRSNVSSNHQSS 352

Query: 352 ISLPFSDALELRAAAAVAANTN----ASQNQAHSAPVSSFSRNAHPFRWDGASSSRAGNL 407
             L FSD+L+LR +AAVAAN N    A Q+Q+H   +   +RN HPF W GAS+SRAG+ 
Sbjct: 353 RPLTFSDSLDLRPSAAVAANANAPQIAPQSQSHVLHIPGLARNMHPFPWSGASNSRAGSS 412

Query: 408 SSSFISG-ERGATLREERNTRSIQRNNAEHPMLVPSAEMRNMVQDPTSWSLATG--SSSG 464
           S SF    ER A L+EE N RS  RNNAEHPM +P+ E RN+ QDPT WSLATG  S++G
Sbjct: 413 SRSFNFSRERAAVLQEEANLRSNHRNNAEHPMFIPATETRNLAQDPTHWSLATGNISTNG 472

Query: 465 GVSSTARIGSSSSTHPSPASAWVPHHNI------------------SIHS---------- 496
           G  ST+R+G SSS H  P +AW+P HN                   SI S          
Sbjct: 473 GGPSTSRMGLSSSVHSLP-TAWIPVHNPPTSNQQRLSEIAPWTLFPSIESEAGGLSGPFS 531

Query: 497 -----PSSSSQEPVMPSSSNSQIHHQTQRRSSFLMERQGDNVLGLPRSLQVLAADIEGRH 551
                PS++++E V+ + + SQ+H QT  RS+FLMERQG++VLG+P SL+ LAADIEGRH
Sbjct: 532 SLPSGPSANTRETVISAGAISQVHQQTYPRSAFLMERQGNDVLGMPHSLRALAADIEGRH 591

Query: 552 RLISEIRQVLNAMRRGENLRVEDYMLFEPFIYHGLAEMHDRHRDMRLDVDNMSYEELLAL 611
           RLISEIRQVL AMRRGE+LR EDYMLF+PFIYHG++E+ DRHRDMRLDVDNMSYEELL L
Sbjct: 592 RLISEIRQVLTAMRRGESLRAEDYMLFDPFIYHGMSELQDRHRDMRLDVDNMSYEELLDL 651

Query: 612 EERIGDVSTGLNEETIMKIMKQKRY---PSLEIEIPSDEEPCCICQEEYTDGDNLGILDC 668
           EERIGDV+TGL++E I+K MK+++Y   P+ E+      EPCCICQEEY  GD+LGILDC
Sbjct: 652 EERIGDVNTGLSDEKILKCMKRQKYSSNPTPEV------EPCCICQEEYAVGDDLGILDC 705

Query: 669 GHDFHTNCIKQWLMQKNLCPICKTTGLPT 697
           GHDFHTNCIKQWLMQKNLCPICKTTGL T
Sbjct: 706 GHDFHTNCIKQWLMQKNLCPICKTTGLAT 734

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555411|ref|XP_002518742.1| protein binding protein, putative [Ricinus communis] gi|223542123|gb|EEF43667.1| protein binding protein, putative [Ricinus communis]

 Score =  606 bits (1562), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 384/722 (53%), Positives = 473/722 (65%), Gaps = 47/722 (6%)

Query: 13  ESVNIDQDSVSSNTSMSQQISVDSILQPVESRLSNYTVASGGATCVNAVTHDVRNLSTWN 72
           + V + Q S S++T+MSQQ S++++L PVE+RLS+  V+   A+CVNA++HDV++ S W 
Sbjct: 21  QEVWVFQGSASNSTTMSQQSSINNMLNPVENRLSSDAVSYDEASCVNAISHDVQSFSGWT 80

Query: 73  SGEPSCRLSLQNQKNDDEMKMEHGWSASCSARTGGGPVSEERQRESTSILFPGRHGIGHS 132
            GE S R++L NQ  DD M+ME  WS+  +     GP S ER+ E   IL PGR  IG S
Sbjct: 81  LGESSSRINLLNQAIDDGMEMEERWSSLVNTHNVVGPRSGERRFEPNDILLPGRGSIGIS 140

Query: 133 GNQDRSGPSFSLGSSSSHSPQNLDLDAGYVDNSGFGGQSMEVGLGPNLRNSGGLETEQAY 192
            N  RS  S   GSSS+    NL+   GYVD+S          LGPN  NS GL   QAY
Sbjct: 141 SNHVRSEQSLLQGSSSNSLLPNLNTSGGYVDDSSSDRHGTGRALGPNRFNSEGLNLGQAY 200

Query: 193 LASASSDKVGTSSGSSGFMLEENNGEAGSPLGGWGLSCKRKALEGTSAPSCSAGSSSRFP 252
              ASS+ VG S GSSG +LEE +G + S LGGWGLSCKRKA  G S P    GSSS FP
Sbjct: 201 -TGASSNNVGPS-GSSGNLLEETSGGSSSSLGGWGLSCKRKA-SGHSYP---GGSSSCFP 254

Query: 253 QAESGV---SARYEASSSLSLSPPLQNYPSVCPPEQSNPRFGVAMR-IVEDGFPSG-ISG 307
            AE+G       + +SSSLSLSPP  N PSV PPEQSN R G  +R +  D  PS  ++G
Sbjct: 255 HAENGAWSSGTNHNSSSSLSLSPPSWNSPSVSPPEQSNTRIGFGVRGVASDAVPSSSVTG 314

Query: 308 NTENRLRSFGRRGDPRHQQESVPYNLSSIGGSGHSNIAPPHPPPISLPFSDALELRAAAA 367
           N +  LR+ GRR +  HQQE   +NLS+ GG+ H N    +     +PFSD+++LR+   
Sbjct: 315 NAD-PLRNIGRRINASHQQEPPMFNLSTTGGARHPNFWLMNQSLRPVPFSDSMDLRSIPT 373

Query: 368 VAANTNASQNQAHSAPVSSFSRNAHPFRWDGASSSRAGNLSSSFISGERGATLREERNTR 427
             AN++  Q  AH+   S+ SR  HPF W+G+S+SRAGN SSS ISGERG+ LRE  N R
Sbjct: 374 --ANSSPPQGPAHAMHASASSRTMHPFPWNGSSTSRAGNSSSSDISGERGSALREAANLR 431

Query: 428 SIQRNNAEHPMLVPSAEMRNMVQDPTSWSLATGS-SSGGVSSTARIGSSSSTHPSPASAW 486
           SI RN+ E  M VP  EMRN  QDP  WSLATG+ SS   +S+ R+  SSS H  P+  W
Sbjct: 432 SISRNSGERSMFVPITEMRNTGQDPAGWSLATGNMSSSASASSTRVSPSSSMHSLPSPTW 491

Query: 487 VPHHN--------ISIHSPSS------------------------SSQEPVMPSSSNSQI 514
           +P HN         S  +P S                        SSQE +M S S+   
Sbjct: 492 LPQHNPTSQNQQRFSEFAPWSLFPSMESESGSHSGHFLSSSGPSASSQETIMSSGSSGHG 551

Query: 515 HHQTQRRSSFLMERQGDNVLGLPRSLQVLAADIEGRHRLISEIRQVLNAMRRGENLRVED 574
           H Q   RS+FLME Q D+VLG+PRSL+ LAADIEGRH+LISEIRQVLNAMRRGENLRVED
Sbjct: 552 HVQPFLRSAFLMEGQSDDVLGMPRSLRALAADIEGRHQLISEIRQVLNAMRRGENLRVED 611

Query: 575 YMLFEPFIYHGLAEMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLNEETIMKIMKQK 634
           YMLF+PF +H +AE++DRHRDMRLDVDNMSYEELLALEERIGDV+TGL+E TI+K+MKQ+
Sbjct: 612 YMLFDPFTHHSMAEVYDRHRDMRLDVDNMSYEELLALEERIGDVNTGLSEGTILKLMKQQ 671

Query: 635 RYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 694
           +Y  +  + P+D EPC ICQEEY DGD+LG LDCGH FHTNCIKQWL+ KN+CPICK T 
Sbjct: 672 KYVFMIADNPADLEPCSICQEEYVDGDDLGTLDCGHVFHTNCIKQWLVLKNICPICKMTA 731

Query: 695 LP 696
           LP
Sbjct: 732 LP 733

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519717|ref|XP_003528516.1| PREDICTED: uncharacterized protein LOC100809024 [Glycine max]

 Score =  572 bits (1475), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 340/729 (46%), Positives = 445/729 (61%), Gaps = 46/729 (6%)

Query: 1   MQGQGSTIDSFPESVNIDQDSVSSNTSMSQQISVDSILQPVESRLSNYTVASGGATCVNA 60
           MQGQ  TI SFP  V++ Q   SS T MS Q S++ +   V+ RLS+Y  +SG   C+  
Sbjct: 1   MQGQRRTIGSFPAIVSMMQGPSSSGTDMSHQSSLNHVQNAVDFRLSDYRGSSGETACLRG 60

Query: 61  VTHDVRNLSTWNSGEPSCRLSLQNQKNDDEMKMEHGWSASCSARTGGGPVSEERQRESTS 120
             H+V++ + W++GE S RL+L NQ ND+ +K EHG S+S +A T  G  SEERQ E  +
Sbjct: 61  TGHNVQSFNGWSTGESSSRLNLINQVNDEGLKSEHGLSSSYNAATEDGLRSEERQFEPNN 120

Query: 121 ILFPGRHGIGHSGNQDRSGPSFSLGSSSSHSPQNLDLDAGYVDNSGFGGQSMEVGLGPNL 180
           ++FP        GNQ R  PSF  GSSS+   QN+ LD G+V N+   G+  E G   N 
Sbjct: 121 VIFPVSSNTNLHGNQSRVHPSFLQGSSSTRISQNISLDMGHVTNAADRGKGKEAGSSVNA 180

Query: 181 RNSGGLETEQAYLASASSDKVGTSSGSSGFMLEENNGEAGSPLGGWGLSCKRKALEGTSA 240
            N+ G++ E+    SAS + +G SS SSG+M + ++  + S L  WG SCKRKALEG+S 
Sbjct: 181 NNTSGIDREKTLFGSASCNHIGASSESSGYMAQGDSANSSSSLVNWGPSCKRKALEGSSR 240

Query: 241 PSCSAGSSSRFPQAESGV----SARYEASSSLSLSPPLQNYPSVCPPEQSNPRFGVAMRI 296
             CS GSSS   Q+ +G          ASSSLS S P+++ P   PP   N R  V    
Sbjct: 241 QLCSGGSSSTLVQSGNGCWPIDPVDLNASSSLSDSTPIEDIPVTSPPLFQNARNEVRQE- 299

Query: 297 VEDGFP-SGISGNTENRLRSFGRRGDPRHQQESVPYNLSSIGGSGHSNIAPPHPPPISLP 355
             + FP   I+ N E  LR+F RR      QESVP NL S G + H N +  H  P S  
Sbjct: 300 ASNAFPLISIAENVERPLRNFDRRMGHLQHQESVPLNLPSTGSARHHNHSSLHQIPGSHS 359

Query: 356 FSDALELRAAAAVA-ANTNASQNQAHSAPVSSFSRNAHPFRWDGASSSRAGNLSSSFISG 414
            +D+LELR  A V+ AN+ AS NQ+ +  +       H F W+  ++ R    S+S+ SG
Sbjct: 360 INDSLELRLTAGVSSANSGASLNQSPALRI-------HSFPWNRTANRRGARSSTSYNSG 412

Query: 415 ERGATLREERNTRSIQRNNAEHPMLVPSAEMRNMVQDPTSWSLATGS--SSGGVSSTARI 472
           ER   + E+ N R   R++ EHPM VP++       +PT W   +G+  +SGGV   + I
Sbjct: 413 ERA--VWEDFNLRMFPRDSTEHPMNVPASSG----HEPTGWHTPSGNVNNSGGVPPPSWI 466

Query: 473 GSSSSTHPSPASAWVPHHNI---SIHSPSSSSQEPVMPS-SSNSQIHH------------ 516
           GSSS+ H  P  +W+ +H +   ++ S S  S   + PS SS S +H+            
Sbjct: 467 GSSSNVHSPPNPSWIFNHEVPAENMQSVSEFSPWSLFPSISSASGVHNGHSAPSSSGPPS 526

Query: 517 --------QTQRRSSFLMERQGDNVLGLPRSLQVLAADIEGRHRLISEIRQVLNAMRRGE 568
                   Q   R++ LMER+G +VL  P SL+ L  D EGR RLISEIRQVL AMRRGE
Sbjct: 527 FTQGSSSNQPYARTALLMERRGGDVLSGPHSLRALTFDNEGRRRLISEIRQVLMAMRRGE 586

Query: 569 NLRVEDYMLFEPFIYHGLAEMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLNEETIM 628
           NLR EDYMLF+PF+YHG+AEMHDRHR+MRLDVDNMSYEELLALEERIGDVSTGL+E+ I+
Sbjct: 587 NLRAEDYMLFDPFLYHGMAEMHDRHREMRLDVDNMSYEELLALEERIGDVSTGLSEDIII 646

Query: 629 KIMKQKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCP 688
           K+MKQ+ Y S+  +   D EPCCICQ+E+ DG+N+G LDCGH+FH+ CIKQWLMQKNLCP
Sbjct: 647 KLMKQRIYVSVMTDSSIDLEPCCICQDEFADGENVGSLDCGHEFHSGCIKQWLMQKNLCP 706

Query: 689 ICKTTGLPT 697
           ICKTT L T
Sbjct: 707 ICKTTALAT 715

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502509|ref|XP_003520061.1| PREDICTED: uncharacterized protein LOC100820322 [Glycine max]

 Score =  543 bits (1399), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 332/734 (45%), Positives = 439/734 (59%), Gaps = 51/734 (6%)

Query: 1   MQGQGSTIDSFPESVNIDQDSVSSNTSMSQQISVDSILQPVESRLSNYTVASGGATCVNA 60
           MQGQ  T+ SFP  V++ Q   SS T M+ Q S++ +   V+  LS+Y  +SG   C+  
Sbjct: 1   MQGQRRTVGSFPAIVSMMQGPSSSGTDMNHQSSLNHVQNAVDFCLSDYRGSSGETACLRG 60

Query: 61  VTHDVRNLSTWNSGEPSCRLSLQNQKNDDEMKMEHGWSASCSARTGGGPVSEERQRESTS 120
             H+V++ S WN+GE S RL+L NQ ND+ +K EHG S+S +A T     SEE Q ++ +
Sbjct: 61  TGHNVQSFSGWNTGESSSRLNLINQVNDEGLKSEHGLSSSYNAATEDDLRSEEGQFKANN 120

Query: 121 ILFPGRHGIGHSGNQDRSGPSFSLGSSSSHSPQNLDLDAGYVDNSGFGGQSMEVGLGPNL 180
           ++FP        GNQ R  PSF  GSSS+H  QN+ LD G+V N+   G+  E G   N 
Sbjct: 121 VIFPVSSNTNLHGNQSRVHPSFLQGSSSTHINQNISLDMGHVANAADRGKGKEAGSSVNA 180

Query: 181 RNSGGLETEQAYLASASSDKVGTSSGSSGFMLEENNGEAGSPLGGWGLSCKRKALEGTSA 240
            N+ G++ E+    SAS +  G SS SSG+M   ++  + S L  WG SCKRKALEG+S 
Sbjct: 181 NNTSGIDREKTLFGSASCNHTGASSESSGYMAWGDSANSSSSLVNWGPSCKRKALEGSSR 240

Query: 241 PSCSAGSSSRFPQAESGV----SARYEASSSLSLSPPLQNYPSVCPPEQSNPRFGVAMRI 296
             CS GSSS   Q+ +G          ASS L+ S P+++ P   PP   N       + 
Sbjct: 241 QLCSGGSSSTLVQSGNGCWPTDPVDLNASSDLTDSTPIEDIPVTSPPLFQNAT-NEERQE 299

Query: 297 VEDGFP-SGISGNTENRLRSFGRRGDPRHQQESVPYNLSSIGGSGHSNIAPPHPPPISLP 355
             +GFP   I+ N E  LR+F RR      QESVP NL S G + H N +  H  P S  
Sbjct: 300 APNGFPLISIAENVERPLRNFDRRMSHLQHQESVPLNLPSTGSARHHNHSSLHQAPGSHS 359

Query: 356 FSDALELR--AAAAVAANTNASQNQAHSAPVSSFSRNAHPFRWDGASSSRAGNLSSSFIS 413
            +D+LELR  A    +AN+ AS NQ+ +  +       H F W+  ++ R    S+S+ S
Sbjct: 360 INDSLELRLTAGGTSSANSGASLNQSPALRI-------HSFPWNRTANPRGARSSTSYNS 412

Query: 414 GERGATLREERNTRSIQRNNAEHPMLVPSAEMRNMVQDPTSWSLATG--SSSGGVSSTAR 471
           GER   +RE+ N R   R++ EHPM VP++       +P  W   +G  ++SGG    + 
Sbjct: 413 GERA--VREDFNLRMFPRDSTEHPMNVPASSG----HEPIGWHTPSGNVNNSGGAPPPSW 466

Query: 472 IGSSSSTHPSPASAWVPHHNI---SIHSPSSSSQEPVMPS-SSNSQIH------------ 515
           IGSSS+ H     +W+ +H +   ++ S S  S   + PS SS S +H            
Sbjct: 467 IGSSSNVHSPANRSWIFNHEVPAENMQSVSEFSPWSLFPSISSASGVHNAHSAPSSSGPP 526

Query: 516 --------HQTQRRSSFLMERQGDNVL-GLPRSLQVLAADIEGRHRLISEIRQVLNAMRR 566
                   +Q+  R++ +MER+G +VL G P SL+ L  D EGR RLISEIRQVL AMRR
Sbjct: 527 SFTQGSSSNQSYARTALVMERRGGDVLSGGPHSLRALTFDNEGRRRLISEIRQVLMAMRR 586

Query: 567 GENLRVEDYMLFE-PFIYHGLAEMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLNEE 625
           GENLR EDYM+F+ PF+YHG+AEMHDRHR+MRLDVDNMSYEELLALEE IGDVSTGLNE+
Sbjct: 587 GENLRAEDYMVFDHPFLYHGMAEMHDRHREMRLDVDNMSYEELLALEEHIGDVSTGLNED 646

Query: 626 TIMKIMKQKRYPSLEIEIPS--DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ 683
            I+K+MKQ+ Y    I   S  D EPCCICQEE++DG+N+G LDCGH+FH+ CIKQWLMQ
Sbjct: 647 VIIKLMKQRIYVRAIIMTDSYTDLEPCCICQEEFSDGENVGSLDCGHEFHSGCIKQWLMQ 706

Query: 684 KNLCPICKTTGLPT 697
           KNLCPICKTT L T
Sbjct: 707 KNLCPICKTTALAT 720

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458665|ref|XP_002282892.1| PREDICTED: uncharacterized protein LOC100267740 [Vitis vinifera]

 Score =  526 bits (1356), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 341/740 (46%), Positives = 449/740 (60%), Gaps = 53/740 (7%)

Query: 1   MQGQGSTIDSFPESVNIDQDSVSSNTSMSQQISVDSILQPVESRLSNYTV--ASGGATCV 58
           MQGQ   I S PE++N D  S SS   + QQ+  +++  P E+RL++Y    +      +
Sbjct: 1   MQGQKGAIGSLPETLNFDHGSTSSGAGLDQQLCWNNMRNPAENRLADYMQPPSDTNLAFL 60

Query: 59  NAVTHDVRNLSTWNSGEPSCRLSLQNQKNDDEMKMEHGWSASCSARTGGGPVSEERQRES 118
           N+++H  +NLS W+ GEPS  ++ QN  + DE K EHGW+ S S   G GP  EE + E 
Sbjct: 61  NSISHGGQNLSGWSLGEPSS-INTQNIVSCDECKTEHGWATSVSGCAGAGPRLEEHRCEP 119

Query: 119 TSILFPGRHGIGHSGNQDRSGPSFSLGSSSSHSPQNLDLDAGYVDNSGFGGQSMEVGLGP 178
           +++L      +  S NQ  +GP F   SSS    QNL+L+AG+V + G   Q +E    P
Sbjct: 120 SNVLSLDNVNVNPSSNQIVNGPLFLQSSSSDAIAQNLNLNAGFVGSGGDDRQGLEC---P 176

Query: 179 NLRNSGGLETEQAYLASASSDKVGTSSGSSGFMLEENNGEAGSPLGGWGLSCKRKALEGT 238
           NL  S G  +E    AS+SSD  G    S G+++EEN+G AGS L G  LSCKRKALEG 
Sbjct: 177 NLYKSSG--SENLPSASSSSDPFGPRILSGGYLVEENDGRAGSSLEGRRLSCKRKALEGN 234

Query: 239 SAPSCSAGSSSRFPQAESGV-----SARYEASSSLSLSPPLQNYPSVCPPEQSNPRFGVA 293
              S   GSSS F + E+ V      ARY A + LS+S P  N     P EQ NPR G+ 
Sbjct: 235 IGQSSVGGSSSSFQRTENNVWHAVVPARYNAGNGLSISSPSGNIIGASPAEQVNPRLGLG 294

Query: 294 MR-IVEDGFPS-GISGNTENRLRSFGRRGDPRHQQESVPYNLSSIGGS-GHSNIAPPHPP 350
           +R +  D  P   + G+ E+  R+F  R +P HQQ+SVP+NL S GGS  HSN++     
Sbjct: 295 VRGVATDSLPVLNVPGSAESSHRNFRMRINPSHQQDSVPHNLFSAGGSVRHSNVSSHQQS 354

Query: 351 PISLPFSDALELRAAAAVAANTNASQNQAHSAPVSSFSRNAHPFRWDGASSSRAGNLSSS 410
              +P + A +LR+  A    ++ SQ+  + AP  +  R    FRW GASSSR GN SS 
Sbjct: 355 TRLIPVNHAPDLRSTPAADNASSQSQSVVNHAP--NLPRTMQSFRWSGASSSRHGNSSSP 412

Query: 411 FISGERGATLREERNTRSIQRNNAEHPMLVPSAEMRNMVQDPTSWSLATG--SSSGGVSS 468
            ISGER A  REE ++RS+ RN  EH M +P+ ++R++ Q+PT+ +LA G  ++ G  +S
Sbjct: 413 LISGERDAAPREESSSRSMPRNTLEHSMFLPAIDLRSLPQNPTNRNLAGGNMTTPGNSAS 472

Query: 469 TARIGSSSSTHPSPASAWVPHH-------------------------------NIS-IHS 496
           T+R GSSS  + S A  W P                                 N S +HS
Sbjct: 473 TSRTGSSSGVNSSSAPTWGPPRDPPSQYSRRLSEYVRRSLFSSVGADSGGQSSNYSPLHS 532

Query: 497 -PSSSSQEPVMPSSSNSQIHHQTQRRSSFLMERQGDNVLGLPRSLQVLAADIEGRHRLIS 555
            PS SSQE    S + +Q HHQ+  RS+ LMER GD VLG+P SL+ LAA  EGR RL+S
Sbjct: 533 GPSPSSQEVAPSSGAGNQGHHQSYPRSALLMERHGDGVLGIPYSLRTLAAASEGRSRLVS 592

Query: 556 EIRQVLNAMRRGENLRVEDYMLFEPFIYHGLAEMHDRHRDMRLDVDNMSYEELLALEERI 615
           EIR VL+ MRRGE+LR ED M+ +  ++ G+A++HDRHRDMRLDVDNMSYEELLALEERI
Sbjct: 593 EIRNVLDLMRRGEDLRFEDVMILDQSVFFGVADIHDRHRDMRLDVDNMSYEELLALEERI 652

Query: 616 GDVSTGLNEETIMKIMKQKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTN 675
           GDV TGL+EETI+K +KQ++Y S+      + EPCCICQEEY DG+++G L+CGHDFH  
Sbjct: 653 GDVCTGLSEETILKQLKQRKYWSVARGAEVEVEPCCICQEEYGDGEDIGTLECGHDFHYG 712

Query: 676 CIKQWLMQKNLCPICKTTGL 695
           CIKQWLM KNLCPICKTT L
Sbjct: 713 CIKQWLMHKNLCPICKTTAL 732

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147845456|emb|CAN83345.1| hypothetical protein VITISV_042276 [Vitis vinifera]

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 340/740 (45%), Positives = 448/740 (60%), Gaps = 53/740 (7%)

Query: 1   MQGQGSTIDSFPESVNIDQDSVSSNTSMSQQISVDSILQPVESRLSNYTV--ASGGATCV 58
           MQGQ   I S PE++N D  S SS   + QQ+  +++  P E+RL++Y    +      +
Sbjct: 1   MQGQKGAIGSLPETLNFDHGSTSSGAGLDQQLCWNNMRNPAENRLADYMQPPSDTNLAFL 60

Query: 59  NAVTHDVRNLSTWNSGEPSCRLSLQNQKNDDEMKMEHGWSASCSARTGGGPVSEERQRES 118
           N+++H  +NLS W+ GEPS  ++ QN  + DE K EHGW+ S S   G GP  EE + E 
Sbjct: 61  NSISHGGQNLSGWSLGEPS-SINTQNIVSCDECKTEHGWATSVSGCAGAGPRLEEHRCEP 119

Query: 119 TSILFPGRHGIGHSGNQDRSGPSFSLGSSSSHSPQNLDLDAGYVDNSGFGGQSMEVGLGP 178
           +++L      +  S NQ  +GP F   SSS    QNL+L+AG+V + G   Q +E    P
Sbjct: 120 SNVLSLDNVNVNPSSNQIVNGPLFLQSSSSDAIAQNLNLNAGFVGSGGDDRQGLEC---P 176

Query: 179 NLRNSGGLETEQAYLASASSDKVGTSSGSSGFMLEENNGEAGSPLGGWGLSCKRKALEGT 238
           NL  S G E   +  AS+SSD  G    S G+++EEN+G AGS L G  LSCKRKALEG 
Sbjct: 177 NLYKSSGSENLPS--ASSSSDPFGPRILSGGYLVEENDGRAGSSLEGRRLSCKRKALEGN 234

Query: 239 SAPSCSAGSSSRFPQAESGV-----SARYEASSSLSLSPPLQNYPSVCPPEQSNPRFGVA 293
              S   GSSS F + E+ V      ARY A + LS+S P  N     P EQ NPR G+ 
Sbjct: 235 IGQSSVGGSSSSFQRTENNVWHAVVPARYNAGNGLSISSPSGNIIGASPAEQVNPRLGLG 294

Query: 294 MR-IVEDGFPS-GISGNTENRLRSFGRRGDPRHQQESVPYNLSSIGGS-GHSNIAPPHPP 350
           +R +  D  P   + G+ E+  R+F  R +P HQQ+SVP+NL S GGS  HSN++     
Sbjct: 295 VRGVATDSLPVLNVPGSAESSHRNFRMRINPSHQQDSVPHNLFSAGGSVRHSNVSSHQQS 354

Query: 351 PISLPFSDALELRAAAAVAANTNASQNQAHSAPVSSFSRNAHPFRWDGASSSRAGNLSSS 410
              +P + A +LR+  A    ++ SQ+  + AP  +  R    FRW GASSSR GN SS 
Sbjct: 355 TRLIPVNHAPDLRSTPAADNASSQSQSVVNHAP--NLPRTMQSFRWSGASSSRHGNSSSP 412

Query: 411 FISGERGATLREERNTRSIQRNNAEHPMLVPSAEMRNMVQDPTSWSLATG--SSSGGVSS 468
            ISGER A  REE ++RS+ RN  EH M +P+ ++R++ Q+PT+ +LA G  ++ G  +S
Sbjct: 413 LISGERDAAPREESSSRSMPRNTLEHSMFLPAIDLRSLPQNPTNRNLAGGNMTTPGNSAS 472

Query: 469 TARIGSSSSTHPSPASAWVPHH-------------------------------NIS-IHS 496
           T+R GSSS  + S A  W P                                 N S +HS
Sbjct: 473 TSRTGSSSGVNSSSAPTWGPPRDPPSQYSRRLSEYVRRSLFSSVGADSGGQSSNYSPLHS 532

Query: 497 -PSSSSQEPVMPSSSNSQIHHQTQRRSSFLMERQGDNVLGLPRSLQVLAADIEGRHRLIS 555
            PS SSQE    S + +Q HHQ+  RS+ LMER GD VLG+P SL+ LAA  EGR RL+S
Sbjct: 533 GPSPSSQEVAPSSGAGNQGHHQSYPRSALLMERHGDGVLGIPYSLRTLAAASEGRSRLVS 592

Query: 556 EIRQVLNAMRRGENLRVEDYMLFEPFIYHGLAEMHDRHRDMRLDVDNMSYEELLALEERI 615
           EIR VL+ MRRGE+LR ED M+ +  ++ G+A++HDRHRDMRLDVDNMSYEELLALEERI
Sbjct: 593 EIRNVLDLMRRGEDLRFEDVMILDQSVFFGVADIHDRHRDMRLDVDNMSYEELLALEERI 652

Query: 616 GDVSTGLNEETIMKIMKQKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTN 675
           GDV TGL+EE I+K +KQ++Y S+      + EPCCICQEEY DG+++G L+CGHDFH  
Sbjct: 653 GDVCTGLSEEXILKQLKQRKYWSVARGAEVEVEPCCICQEEYGDGEDIGTLECGHDFHYG 712

Query: 676 CIKQWLMQKNLCPICKTTGL 695
           CIKQWLM KNLCPICKTT L
Sbjct: 713 CIKQWLMHKNLCPICKTTAL 732

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147821644|emb|CAN68213.1| hypothetical protein VITISV_022802 [Vitis vinifera]

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 324/571 (56%), Positives = 390/571 (68%), Gaps = 67/571 (11%)

Query: 176 LGPNLRNSGGLETEQAYLASASSDKVGTSSGSSGFMLEENNGEAGSPLGGWGLSCKRKAL 235
           +G  L  SGGL TEQ    SAS+D +G SSGSSG ++EE+NG +GS LG WGLSCKRKAL
Sbjct: 1   MGAGLCKSGGLGTEQVSPVSASADNIGASSGSSGSLIEESNGGSGSSLGSWGLSCKRKAL 60

Query: 236 EGTSAPSCSAGSSSRFPQAES----GVSARYEASSSLSLSPPLQNYPSVCPPEQSNPRFG 291
           EGTS  S  +GSSS  PQAE      V A   AS+S S+S P  N  SV PP   N + G
Sbjct: 61  EGTSGQSYPSGSSSCSPQAEPSAWLAVPAHSNASNSSSISTPSGNSLSVNPPGLPNQQSG 120

Query: 292 VAMRIV--EDGFPS-GISGNTENRLRSFGRRGDPRHQQESVPYNLSSIGGSGHSNIAPPH 348
           + MR V   D FPS  ++GN EN  R+FGRR +P HQQE V +NLSS G +  SN++  H
Sbjct: 121 IGMRGVAPSDVFPSLSVTGNAENSQRNFGRRVNPGHQQEPVAFNLSSAGITRRSNVSSNH 180

Query: 349 PPPISLPFSDALELRAAAAVAANTN----ASQNQAHSAPVSSFSRNAHPFRWDGASSSRA 404
                L FSD+L+LR +AAVAAN N    A Q+Q+H   +   +RN HPF W GAS+SRA
Sbjct: 181 QSSRPLTFSDSLDLRPSAAVAANANAPQIAPQSQSHVLHIPGLARNMHPFPWSGASNSRA 240

Query: 405 GNLSSSFISGERGATLREERNTRSIQRNNAEHPMLVPSAEMRNMVQDPTSWSLATG--SS 462
           G            A L+EE N RS  RNNAEHPM +P+ E RN+ QDPT WSLATG  S+
Sbjct: 241 GT-----------AVLQEEANLRSNHRNNAEHPMFIPATETRNLAQDPTHWSLATGNIST 289

Query: 463 SGGVSSTARIGSSSSTHPSPASAWVPHHNI------------------SIHS-------- 496
           +GG  ST+R+G SSS H  P +AW+P HN                   SI S        
Sbjct: 290 NGGGPSTSRMGLSSSVHSLP-TAWIPVHNPPTSNQQRLSEIAPWTLFPSIESEAGGLSGP 348

Query: 497 -------PSSSSQEPVMPSSSNSQIHHQTQRRSSFLMERQGDNVLGLPRSLQVLAADIEG 549
                  PS++++E V+ + + SQ+H QT  RS+FLMERQG++VLG+P SL+ LAADIEG
Sbjct: 349 FSSLPSGPSANTRETVISAGAISQVHQQTYPRSAFLMERQGNDVLGMPHSLRALAADIEG 408

Query: 550 RHRLISEIRQVLNAMRRGENLRVEDYMLFEPFIYHGLAEMHDRHRDMRLDVDNMSYEELL 609
           RHRLISEIRQVL AMRRGE+LR EDYMLF+PFIYHG++E+ DRHRDMRLDVDNMSYEELL
Sbjct: 409 RHRLISEIRQVLTAMRRGESLRAEDYMLFDPFIYHGMSELQDRHRDMRLDVDNMSYEELL 468

Query: 610 ALEERIGDVSTGLNEETIMKIMKQKRY---PSLEIEIPSDEEPCCICQEEYTDGDNLGIL 666
            LEERIGDV+TGL++E I+K MK+++Y   P+ E+      EPCCICQEEY  GD+LGIL
Sbjct: 469 DLEERIGDVNTGLSDEKILKCMKRQKYSSNPTPEV------EPCCICQEEYAVGDDLGIL 522

Query: 667 DCGHDFHTNCIKQWLMQKNLCPICKTTGLPT 697
           DCGHDFHTNCIKQWLMQKNLCPICKTTGL T
Sbjct: 523 DCGHDFHTNCIKQWLMQKNLCPICKTTGLAT 553

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475291|ref|XP_003607931.1| RING finger protein [Medicago truncatula] gi|355508986|gb|AES90128.1| RING finger protein [Medicago truncatula]

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 322/711 (45%), Positives = 414/711 (58%), Gaps = 80/711 (11%)

Query: 19  QDSVSSNTSMSQQISVDSILQPVESRLSNYTVASGGATCVNAVTHDVRNLSTWNSGEPSC 78
           Q   S+ T M+ Q S++     V+ RLS+Y  +SG   C+     +V + + WN+GEPS 
Sbjct: 3   QGPSSNGTDMNHQSSLNHAQNAVDFRLSDYRGSSGETACLRGTGPNV-SFNGWNTGEPSS 61

Query: 79  RLSLQNQKNDDEMKMEHGWSASCSARTGGGPVSEERQRESTSILFPGRHGIGHSGNQDRS 138
            L+L NQ NDD +K E                 EERQ     +L          GNQ R 
Sbjct: 62  GLNLVNQVNDDGLKSEQ--------------RPEERQ-----LL----------GNQSRI 92

Query: 139 GPSFSLGSSSSHSPQNLDLDAGYVDNSGFGGQSMEVGLGPNLRNSGGLETEQAYLASASS 198
            PSF  GSSS+H+ Q ++    ++ NS   G+  E G G N  +  GL+ E+  + S+S 
Sbjct: 93  HPSFLQGSSSNHTAQGINFGMEHIANSSDRGKGKETGSGVNNNDPFGLDREKTSIGSSSF 152

Query: 199 DKVGTSSGSSGFMLEENNGEAGSPLGGWGLSCKRKALEGTSAPSCSAGSSSRFPQAESGV 258
           ++ G SS SSG+M   ++G + S L  WG SCKRKALE +S   C+ GSSS   Q+E+G 
Sbjct: 153 NQTGASSASSGYMAWGDSGSSSSSLANWGPSCKRKALEDSSMQLCTGGSSSSLVQSENGY 212

Query: 259 ----SARYEASSSLSLSPPLQNYPSVCPPEQSNPRFGVAMRIVEDGFPS--GISGNTENR 312
               S       SL    PL+++    PP Q N R  V      + FPS   I+ N E  
Sbjct: 213 WLTDSVDLNVPGSLGDLSPLEDFRVTSPPFQQNTRNEVRQE-ASNAFPSMVSIAENVERP 271

Query: 313 LRSFGRRGDPRHQQESVPYNLSSIGGSGHSNIAPPHPPPISLPFSDALELRAAAAV-AAN 371
           LR+F RR    H  ESVP NL+S G + H N   PH  P SL F+++L+LR AA V AAN
Sbjct: 272 LRNFDRRMTHLHHPESVPLNLTSTGSARHHNYPSPHQIPGSLSFNESLDLRLAAGVTAAN 331

Query: 372 TNASQNQAHSAPVSSFSRNAHPFRWDGASSSRAGNLSSSFISGERGATLREERNTRSIQR 431
           +   QNQ       S S + HPF W+ A++ R    SSS+ SGER   +R++ N R   R
Sbjct: 332 SAVPQNQ-------SPSLHMHPFPWNRAANPRVARSSSSYSSGERA--VRDDFNLRIFPR 382

Query: 432 NNAEHPMLVPSAEMRNMVQDPTSW--SLATGSSSGGVSSTARIGSSSSTHPSPASAWVPH 489
           ++ EHPM +P++       +P  W  S +  +++GG+   + IGS+S+ H  P  +W  +
Sbjct: 383 DSTEHPMNMPASS----GHEPAGWYSSSSNLNNAGGIPPPSWIGSTSNVHSLPNPSWTFN 438

Query: 490 HNI--------SIHSP-----------------SSSSQEPVMPSSSNSQIHHQTQRRSSF 524
           H +        S  SP                 SSS+  P  PS S     +Q   R SF
Sbjct: 439 HEVPTENLQRVSEFSPWSLFPSISSASGTHNGHSSSTSGP--PSFSQGSSSNQPHPRPSF 496

Query: 525 LMERQGDNVLGLPRSLQVLAADIEGRHRLISEIRQVLNAMRRGENLRVEDYMLFEPFIYH 584
           + ER+G +VL  P SL+ L  D EGR RLISEIRQVL AMRRGENLR EDYMLF+PF+YH
Sbjct: 497 MTERRGGDVLSAPHSLRTLPFDNEGRRRLISEIRQVLLAMRRGENLRAEDYMLFDPFLYH 556

Query: 585 GLAEMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLNEETIMKIMKQKRYPSLEIEIP 644
           G+AEMHDRHR+MRLDVDNMSYEELLALEERIGDVSTGL+E+ I K+MKQ+ Y SL  E  
Sbjct: 557 GMAEMHDRHREMRLDVDNMSYEELLALEERIGDVSTGLSEDIINKLMKQRFYMSLMTESS 616

Query: 645 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 695
           SD EPCCICQEEY DG NLG+LDCGH+FH+NCI QWLMQKNLCPICKTT L
Sbjct: 617 SDLEPCCICQEEYVDGQNLGLLDCGHEFHSNCITQWLMQKNLCPICKTTAL 667

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538248|ref|XP_002510189.1| protein binding protein, putative [Ricinus communis] gi|223550890|gb|EEF52376.1| protein binding protein, putative [Ricinus communis]

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 307/742 (41%), Positives = 417/742 (56%), Gaps = 78/742 (10%)

Query: 1   MQGQGSTIDSFPESVNIDQDSVSSNTSMSQQISVDSILQPVESRLSNYTVASG--GATCV 58
           MQGQ   I S PE ++ D  S S N  + QQI  +++    ESRL  + ++        V
Sbjct: 1   MQGQRGIIGSLPEILDFDHGSTSGNAIIDQQICWNNMQNSAESRLPEFMLSPSHMNNAYV 60

Query: 59  NAVTHDVRNLSTWNSGEPSCRLSLQNQKNDDEMKMEHGWSASCSARTGGGPVSEERQRES 118
            +V  + ++LS W+ GEPS   S QN+ + +E K EHGWS+S S   G GP  EER+ E 
Sbjct: 61  GSVDQERQSLSGWSLGEPSSS-SAQNEASREEQKSEHGWSSSGSTCAGAGPRLEERRYEP 119

Query: 119 TSILFPGRHGIGHSGNQDRSGPSFSLGSSSSHSPQNLDLDAGYVDNSGFGGQSMEVGLGP 178
           T+IL         S +     P F   S+S+  PQNL+L+AG+V   G G  +  +    
Sbjct: 120 TNIL---------SLDSVNVDPQFVQSSNSNPIPQNLNLNAGFV---GHGSDNSPLMESS 167

Query: 179 NLRNSGGLETEQAYLASASSDKVGTSSGSSGFMLEENNGEAGSPLGGWGLSCKRKALEGT 238
            +  SG  + E+   AS+S   +   SGSSG+++EEN+   GS L G   SCKRKA+EG 
Sbjct: 168 GMYKSGRAQNERIAPASSSGTFL-HPSGSSGYIVEENDSRPGSSLDGRRQSCKRKAVEGH 226

Query: 239 SAPSCSAGSSSRFP----QAESGVSARYEASSSLSLSPPLQNYPSVCPPEQSNPRFGVAM 294
              S  + SS  F      A  GV  RY+A  SLS+S          P EQ NPR G+ +
Sbjct: 227 MGQSSVSESSGFFQCSDGSAWPGVPPRYDAGGSLSIS---------APSEQMNPRLGLGL 277

Query: 295 R-IVEDGFPS-GISGNTENRLRSFGRRGDPRHQQESVPYNLSSIGGSGHSNIAPPHPPPI 352
           R +  D  P   ++G  E   R+F  R    +Q+   P + S+      SN+   H    
Sbjct: 278 RGLASDSIPDLAVAGRPETSQRNFRLRISSSNQESVPPSSFSTGSAVRRSNVPSSHRSSR 337

Query: 353 SLPFSDALELRAAAAVAANTNASQNQAHSAPVSSFSRNAHPFRWDGASSSRAGNLSSSFI 412
            LP + +L+ R+A+ V   T  S +Q    PV +  +N   FRW+        N SS   
Sbjct: 338 LLPVNHSLDFRSASGVDNAT--SHSQPVIIPVPALPQNVPSFRWNE-------NSSSRIG 388

Query: 413 SGERGATL--REERNTRSIQRNNAEHPMLVPSAEMRNMVQDPTSWSLATGSSS--GGVSS 468
           S     TL  REE ++RS+ RN  EHPM VP+ E+R   ++PT+ S+  G++S  G ++S
Sbjct: 389 SSSSSITLPDREEASSRSMSRNMWEHPMFVPTTELRTSARNPTNRSVTGGNASVPGNIAS 448

Query: 469 TARIGSSSSTHPSPASAWVPH--------------------------------HNISIHS 496
            +R GSSS  HP  A  WV H                                H++    
Sbjct: 449 ASRAGSSSGVHPLSAPTWVSHPNPPSRNSRRLAEFVRRSLFSAGADSGGQSTTHSLLPSG 508

Query: 497 PSSSSQEPVMPSSSNSQIHHQTQRRSSFLMERQGDNVLGLPRSLQVLAADIEGRHRL-IS 555
           P  S +E + PS   +Q HHQ+  RS+  MERQG+ VLG+P  L+ LAA+ +GR RL +S
Sbjct: 509 PPGSLEETMHPSGVGNQGHHQSYPRSASWMERQGEGVLGIPYPLRTLAANSDGRSRLLVS 568

Query: 556 EIRQVLNAMRRGENLRVEDYMLFEPFIYHGLAEMHDRHRDMRLDVDNMSYEELLALEERI 615
           EIR VL+ MRRGE+LR ED M+ +  ++ G+A++HDRHRDMRLDVDNMSYEELLALEERI
Sbjct: 569 EIRNVLDLMRRGESLRFEDVMILDQSVFFGVADIHDRHRDMRLDVDNMSYEELLALEERI 628

Query: 616 GDVSTGLNEETIMKIMKQKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTN 675
           G+VSTGL+EETI   +KQ++Y S+ +    + EPCC+CQEEY +G+++G LDCGHDFHTN
Sbjct: 629 GNVSTGLSEETITNQLKQRKY-SIAVGTEVEAEPCCVCQEEYNNGEDVGTLDCGHDFHTN 687

Query: 676 CIKQWLMQKNLCPICKTTGLPT 697
           CIKQWLM KN CPICKTTGL T
Sbjct: 688 CIKQWLMLKNWCPICKTTGLAT 709

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475293|ref|XP_003607932.1| RING finger protein [Medicago truncatula] gi|355508987|gb|AES90129.1| RING finger protein [Medicago truncatula]

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 274/569 (48%), Positives = 347/569 (60%), Gaps = 50/569 (8%)

Query: 161 YVDNSGFGGQSMEVGLGPNLRNSGGLETEQAYLASASSDKVGTSSGSSGFMLEENNGEAG 220
           ++ NS   G+  E G G N  +  GL+ E+  + S+S ++ G SS SSG+M   ++G + 
Sbjct: 3   HIANSSDRGKGKETGSGVNNNDPFGLDREKTSIGSSSFNQTGASSASSGYMAWGDSGSSS 62

Query: 221 SPLGGWGLSCKRKALEGTSAPSCSAGSSSRFPQAESGV----SARYEASSSLSLSPPLQN 276
           S L  WG SCKRKALE +S   C+ GSSS   Q+E+G     S       SL    PL++
Sbjct: 63  SSLANWGPSCKRKALEDSSMQLCTGGSSSSLVQSENGYWLTDSVDLNVPGSLGDLSPLED 122

Query: 277 YPSVCPPEQSNPRFGVAMRIVEDGFPS--GISGNTENRLRSFGRRGDPRHQQESVPYNLS 334
           +    PP Q N R  V      + FPS   I+ N E  LR+F RR    H  ESVP NL+
Sbjct: 123 FRVTSPPFQQNTRNEVRQE-ASNAFPSMVSIAENVERPLRNFDRRMTHLHHPESVPLNLT 181

Query: 335 SIGGSGHSNIAPPHPPPISLPFSDALELRAAAAV-AANTNASQNQAHSAPVSSFSRNAHP 393
           S G + H N   PH  P SL F+++L+LR AA V AAN+   QNQ       S S + HP
Sbjct: 182 STGSARHHNYPSPHQIPGSLSFNESLDLRLAAGVTAANSAVPQNQ-------SPSLHMHP 234

Query: 394 FRWDGASSSRAGNLSSSFISGERGATLREERNTRSIQRNNAEHPMLVPSAEMRNMVQDPT 453
           F W+ A++ R    SSS+ SGER   +R++ N R   R++ EHPM +P++       +P 
Sbjct: 235 FPWNRAANPRVARSSSSYSSGERA--VRDDFNLRIFPRDSTEHPMNMPASS----GHEPA 288

Query: 454 SW--SLATGSSSGGVSSTARIGSSSSTHPSPASAWVPHHNI--------SIHSP------ 497
            W  S +  +++GG+   + IGS+S+ H  P  +W  +H +        S  SP      
Sbjct: 289 GWYSSSSNLNNAGGIPPPSWIGSTSNVHSLPNPSWTFNHEVPTENLQRVSEFSPWSLFPS 348

Query: 498 -----------SSSSQEPVMPSSSNSQIHHQTQRRSSFLMERQGDNVLGLPRSLQVLAAD 546
                      SSS+  P  PS S     +Q   R SF+ ER+G +VL  P SL+ L  D
Sbjct: 349 ISSASGTHNGHSSSTSGP--PSFSQGSSSNQPHPRPSFMTERRGGDVLSAPHSLRTLPFD 406

Query: 547 IEGRHRLISEIRQVLNAMRRGENLRVEDYMLFEPFIYHGLAEMHDRHRDMRLDVDNMSYE 606
            EGR RLISEIRQVL AMRRGENLR EDYMLF+PF+YHG+AEMHDRHR+MRLDVDNMSYE
Sbjct: 407 NEGRRRLISEIRQVLLAMRRGENLRAEDYMLFDPFLYHGMAEMHDRHREMRLDVDNMSYE 466

Query: 607 ELLALEERIGDVSTGLNEETIMKIMKQKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGIL 666
           ELLALEERIGDVSTGL+E+ I K+MKQ+ Y SL  E  SD EPCCICQEEY DG NLG+L
Sbjct: 467 ELLALEERIGDVSTGLSEDIINKLMKQRFYMSLMTESSSDLEPCCICQEEYVDGQNLGLL 526

Query: 667 DCGHDFHTNCIKQWLMQKNLCPICKTTGL 695
           DCGH+FH+NCI QWLMQKNLCPICKTT L
Sbjct: 527 DCGHEFHSNCITQWLMQKNLCPICKTTAL 555

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	697
TAIR|locus:2124271	666	MBR2 "MED25 BINDING RING-H2 PR	0.261	0.273	0.693	2.6e-95
TAIR|locus:2028225	645	AT1G45180 [Arabidopsis thalian	0.259	0.280	0.569	1e-73
TAIR|locus:2160031	691	AT5G42940 [Arabidopsis thalian	0.263	0.266	0.587	2.3e-71
TAIR|locus:2149378	520	AT5G24870 [Arabidopsis thalian	0.225	0.301	0.455	5.2e-33
TAIR|locus:2125284	497	AT4G31450 [Arabidopsis thalian	0.200	0.281	0.489	4.7e-30
TAIR|locus:2159634	525	AT5G10650 [Arabidopsis thalian	0.200	0.266	0.452	2.8e-29
TAIR|locus:2027804	367	AT1G73760 [Arabidopsis thalian	0.169	0.321	0.466	3.6e-27
TAIR|locus:2030933	368	AT1G17970 [Arabidopsis thalian	0.162	0.307	0.448	1.7e-25
TAIR|locus:2009660	494	AT1G53190 [Arabidopsis thalian	0.159	0.224	0.466	1.1e-23
TAIR|locus:2086305	486	AT3G15070 [Arabidopsis thalian	0.195	0.279	0.4	6.4e-23

TAIR|locus:2124271 MBR2 "MED25 BINDING RING-H2 PROTEIN 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 670 (240.9 bits), Expect = 2.6e-95, Sum P(3) = 2.6e-95
 Identities = 127/183 (69%), Positives = 146/183 (79%)

Query:   515 HHQTQRRSSFLMERQGDNVLGLPRSLQVLAADIEGRHRLISEIRQVLNAMRRGENLRVED 574
             H   QRRS  L+ERQ D+ L L    + LAAD +GR+RLISEIRQVL+AMRRGENLR ED
Sbjct:   485 HRSRQRRSGLLLERQNDH-LHLRHLGRSLAADNDGRNRLISEIRQVLSAMRRGENLRFED 543

Query:   575 YMLFEPFIYHGLAEMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLNEETIMKIMKQK 634
             YM+F+P IY G+AEMHDRHRDMRLDVDNMSYEELLAL ERIGDVSTGL+EE I+K+MKQ 
Sbjct:   544 YMVFDPLIYQGMAEMHDRHRDMRLDVDNMSYEELLALGERIGDVSTGLSEEVILKVMKQH 603

Query:   635 RYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 694
             ++ S       D EPCC+CQEEY +GD+LG L CGH+FHT C+KQWLM KNLCPICKT  
Sbjct:   604 KHTSSAAGSHQDMEPCCVCQEEYAEGDDLGTLGCGHEFHTACVKQWLMLKNLCPICKTVA 663

Query:   695 LPT 697
             L T
Sbjct:   664 LST 666

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2028225 AT1G45180 [Arabidopsis thaliana (taxid:3702)]

 Score = 547 (197.6 bits), Expect = 1.0e-73, Sum P(4) = 1.0e-73
 Identities = 106/186 (56%), Positives = 133/186 (71%)

Query:   513 QIHHQTQRRSSFLMERQGDNVLGLPRSLQVLAADIEGRHRL-ISEIRQVLNAMRRGENLR 571
             Q+H++   R+     RQG +  G+  SL+ LA+   GR R+  SEIR +L  MRR  NLR
Sbjct:   458 QVHNRASSRAG---PRQGQDATGISHSLRGLASTSRGRTRMGASEIRNILEHMRRAGNLR 514

Query:   572 VEDYMLFEPFIYHGLAEMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLNEETIMKIM 631
             +ED ML    I  G A++HDR+RDMRLDVDNM+YEELL+LEERIGDV TGLNEETI   +
Sbjct:   515 LEDVMLLNQSIMLGAADIHDRYRDMRLDVDNMTYEELLSLEERIGDVCTGLNEETISNRL 574

Query:   632 KQKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 691
             KQ++Y S       + EPCC+CQEEY + + +G L+CGHDFH+ CIK+WL QKNLCPICK
Sbjct:   575 KQQKYKS-STRSSQEVEPCCVCQEEYKEEEEIGRLECGHDFHSQCIKEWLKQKNLCPICK 633

Query:   692 TTGLPT 697
             TTGL T
Sbjct:   634 TTGLNT 639

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2160031 AT5G42940 [Arabidopsis thaliana (taxid:3702)]

 Score = 584 (210.6 bits), Expect = 2.3e-71, Sum P(3) = 2.3e-71
 Identities = 111/189 (58%), Positives = 142/189 (75%)

Query:   513 QIHHQTQRRSSFLMERQGDNVLGLPRSLQVLAADIEGRHRL-ISEIRQVLNAMRR---GE 568
             Q+H++   R+  L +RQGD+V+G+P  L+ LAA   GR RL +S+++ VL+ MRR     
Sbjct:   497 QMHNRAYSRAGPLFDRQGDSVVGIPHPLRALAAASRGRSRLMVSQMQNVLDVMRRDANNN 556

Query:   569 NLRVEDYMLFEPFIYHGLAEMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLNEETIM 628
             NLR+ED ML    +    A  HDR+RDMRLDVDNMSYEELLALEERIGDV TG+NEETI 
Sbjct:   557 NLRLEDVMLLNHSVLFDGATGHDRYRDMRLDVDNMSYEELLALEERIGDVCTGVNEETIS 616

Query:   629 KIMKQKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCP 688
               +KQ++Y S   + P D EPCC+CQEEYT+G+++G L+CGH+FH+ CIK+WL QKNLCP
Sbjct:   617 NRLKQRKYKS-NTKSPQDAEPCCVCQEEYTEGEDMGTLECGHEFHSQCIKEWLKQKNLCP 675

Query:   689 ICKTTGLPT 697
             ICKTTGL T
Sbjct:   676 ICKTTGLNT 684

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2149378 AT5G24870 [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 76/167 (45%), Positives = 108/167 (64%)

Query:   535 GLPRSLQVLAADIEGRHRL--ISEIRQVLNAMRRGENLRVEDYMLFEPFIY-HGLAEMHD 591
             GL RSL  +  D   R+ +  ++E+   L  + + E L  E   + E  ++ +G++  HD
Sbjct:   347 GLSRSL--MNRDTFRRYNMNGVAEVLLALERIEQDEELTYEQLAVLETNLFLNGMSSFHD 404

Query:   592 RHRDMRLDVDNMSYEELLALEERIGDVSTGLNEETIMKIMKQKRY-PSLEIE---IPSDE 647
             +HRDMRLD+DNMSYEELLALEE++G VST L+EE ++K +K   Y P+ E +   +  D+
Sbjct:   405 QHRDMRLDIDNMSYEELLALEEKMGTVSTALSEEALLKSLKSSIYRPNDESDDICLNKDD 464

Query:   648 E-PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTT 693
             +  C ICQEEY DGD +G L C H +H +C +QWL  KN CPICKT+
Sbjct:   465 DVKCSICQEEYVDGDEVGTLPCQHKYHVSCAQQWLRMKNWCPICKTS 511

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2125284 AT4G31450 [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 4.7e-30, P = 4.7e-30
 Identities = 73/149 (48%), Positives = 90/149 (60%)

Query:   554 ISEIRQVLNAMRRGENLRVEDYMLFEPFIYHGLAEMHDRHRDMRLDVDNMSYEELLALEE 613
             ISEI   L+ + +   L  ED ++ E  +  G    HD+HRDMRLD+DNMSYEELLALEE
Sbjct:   343 ISEILPELDRIEQDIELNYEDLLIMETGLLLGGLSFHDQHRDMRLDIDNMSYEELLALEE 402

Query:   614 RIGDVSTGLNEETIMKIMKQKRYPSLEIEI------PSDEEP---CCICQEEYTDGDNLG 664
             RIG VST L EE I K +K   Y    +        PSD +    C ICQEEYT GD +G
Sbjct:   403 RIGTVSTALTEEAISKCLKTSIYQMKPLSYGSITKSPSDNKEDAKCSICQEEYTIGDEVG 462

Query:   665 ILDCGHDFHTNCIKQWLMQKNLCPICKTT 693
              L C H +H  C+++WL  K+ CPICK T
Sbjct:   463 RLHCEHTYHVKCVQEWLRIKSWCPICKAT 491

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2159634 AT5G10650 [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 2.8e-29, Sum P(2) = 2.8e-29
 Identities = 66/146 (45%), Positives = 92/146 (63%)

Query:   554 ISEIRQVLNAMRRGENLRVEDYMLFEPFIYH-GLAEMHDRHRDMRLDVDNMSYEELLALE 612
             I+E+   L  +   E L  E     E  ++  G+   +D+HRDMRLD+DNMSYEELLAL 
Sbjct:   373 IAEVLLALERIEHDEELTYEQLASIETNLFSSGMFRFYDQHRDMRLDIDNMSYEELLALG 432

Query:   613 ERIGDVSTGLNEETIMKIMKQKRYPSLE----IEIPSDEE-PCCICQEEYTDGDNLGILD 667
             +++G VST L+EE + + +KQ  Y   +    I +  D++  C ICQEEY DGD LG + 
Sbjct:   433 DKMGTVSTALSEEALSRSLKQSIYQETDETGSISLYKDDDIKCSICQEEYVDGDELGTIP 492

Query:   668 CGHDFHTNCIKQWLMQKNLCPICKTT 693
             C H +H +C++QWL  KN CPICKT+
Sbjct:   493 CQHMYHVSCVQQWLRMKNWCPICKTS 518

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0006914 "autophagy" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

TAIR|locus:2027804 AT1G73760 [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 3.6e-27, Sum P(2) = 3.6e-27
 Identities = 56/120 (46%), Positives = 79/120 (65%)

Query:   573 EDYMLFEPFIYHGLAEMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLNEETIMKIMK 632
             E  M+   F+  G+    D+ RDMRL+VDNM+YE+LL L ERIG V+TGL E+ I   ++
Sbjct:   244 EMMMMQNGFVMGGVLSSFDQFRDMRLNVDNMTYEQLLELGERIGHVNTGLTEKQIKSCLR 303

Query:   633 QKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT 692
             + + P  +    +D + C ICQ+EY   D +G L CGH FH +C+ QWL++KN CP+CKT
Sbjct:   304 KVK-PCRQDTTVADRK-CIICQDEYEAKDEVGELRCGHRFHIDCVNQWLVRKNSCPVCKT 361

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2030933 AT1G17970 [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
 Identities = 52/116 (44%), Positives = 76/116 (65%)

Query:   576 MLFEPFIYHGLAEMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLNEETIMKIMKQKR 635
             ML   F+   + +  D + ++RLDVD+MSYE+LL L +RIG V+TGL E  I + + + +
Sbjct:   249 MLQNGFVMGRITDSRDNYHELRLDVDSMSYEQLLELGDRIGYVNTGLKESEIHRCLGKIK 308

Query:   636 YPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 691
              PS+   +   +  C ICQ+EY   D +G L+CGH FH +C+KQWL +KN CP+CK
Sbjct:   309 -PSVSHTLV--DRKCSICQDEYEREDEVGELNCGHSFHVHCVKQWLSRKNACPVCK 361

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2009660 AT1G53190 [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 56/120 (46%), Positives = 76/120 (63%)

Query:   585 GLAEMH-DRHRDMRLDVDNMSYEELLALEERIGDVSTGLNEETIMKIMKQKRYPSLEIEI 643
             G    H D HRDMRLD++ MSYEELLAL ERIG V+TGL EE +   +K +    +  E 
Sbjct:   368 GSGNNHIDHHRDMRLDIEEMSYEELLALSERIGTVNTGLPEEDVKNHLKTRTCSGINFEK 427

Query:   644 PS--------DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 695
              S        + EPC ICQE + + + +  LDCGH++H  C+++WL+ KN+CPICK+  L
Sbjct:   428 ESSSPRTKDLETEPCTICQESFKNEEKIATLDCGHEYHAECLEKWLIVKNVCPICKSEAL 487

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2086305 AT3G15070 [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 6.4e-23, P = 6.4e-23
 Identities = 60/150 (40%), Positives = 89/150 (59%)

Query:   550 RHRLISEIRQVLNAMRRGENLRVEDYMLFEPFIYHGLAEMHDRHRDMRLDVDNMSYEELL 609
             RHR +   R    AM   EN        +E   ++      D H+DMRLD+++MSYEELL
Sbjct:   334 RHRELPHFR----AMPANENA------FWEVGDFYNAVNYVDHHQDMRLDIEDMSYEELL 383

Query:   610 ALEERIGDVSTGLNEETIMKIMKQKRYPSLEIEI-PSDE---EPCCICQEEYTDGDNLGI 665
             AL ++IG V TGL+ E + +++K++    + +E  PS +   + C ICQE Y + D +  
Sbjct:   384 ALSDQIGTVKTGLSSEDVKELLKRRTSTRINLEEGPSTDLETDSCTICQENYKNEDKIAT 443

Query:   666 LDCGHDFHTNCIKQWLMQKNLCPICKTTGL 695
             LDC H +H  C+K+WL+ KN+CPICK+  L
Sbjct:   444 LDCMHKYHAECLKKWLVIKNVCPICKSEAL 473

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00036617001 SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (669 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	697
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	1e-16
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	2e-13
smart00184	40	smart00184, RING, Ring finger	1e-11
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	4e-11
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	1e-10
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	5e-10
COG5194	88	COG5194, APC11, Component of SCF ubiquitin ligase	3e-08
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	5e-08
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	2e-07
pfam12861	85	pfam12861, zf-Apc11, Anaphase-promoting complex su	2e-07
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	6e-06
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	3e-05
smart00744	49	smart00744, RINGv, The RING-variant domain is a C4	0.002

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 73.6 bits (181), Expect = 1e-16
 Identities = 18/43 (41%), Positives = 27/43 (62%)

Query: 650 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT 692
           C IC +E+  G+ + +L CGH FH  C+ +WL   N CP+C+ 
Sbjct: 3   CPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSNTCPLCRA 45

Length = 46

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 64.4 bits (157), Expect = 2e-13
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 650 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTT 693
           C IC EE+ +   + +L CGH F  +CI +WL   KN CP+C+T 
Sbjct: 2   CPICLEEFRE--PVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44

Length = 45

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 59.4 bits (144), Expect = 1e-11
 Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 3/42 (7%)

Query: 650 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNL-CPIC 690
           C IC EEY    +  IL CGH F  +CI++WL   N  CPIC
Sbjct: 1   CPICLEEYLK--DPVILPCGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 59.0 bits (143), Expect = 4e-11
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 10/56 (17%)

Query: 646 DEEPCCICQEEYTD--------GDN--LGILDCGHDFHTNCIKQWLMQKNLCPICK 691
           +++ C IC+  +          GD+  +   +CGH FH +CI +WL  +N CP+C+
Sbjct: 18  EDDVCAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKTRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 56.3 bits (136), Expect = 1e-10
 Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 3/42 (7%)

Query: 650 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNL-CPIC 690
           C IC EE  D   + IL CGH F + CI  WL   N+ CP+C
Sbjct: 1   CPICLEEPKD--PVTILPCGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 54.8 bits (132), Expect = 5e-10
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 646 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT 692
           +E  C IC +   D   + +  CGH F   CI ++L +K+ CPIC+T
Sbjct: 1   EELECPICLDLLRD--PVVLTPCGHVFCRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

 Score = 51.4 bits (123), Expect = 3e-08
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 648 EPCCICQEEYTDGDN--LGILDCGHDFHTNCIKQWLMQKNLCPICKTT 693
             C  CQ   T GD   +    C H FH +CI +WL  K +CP+ + T
Sbjct: 32  GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQT 79

Length = 88

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 54.0 bits (130), Expect = 5e-08
 Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 20/92 (21%)

Query: 622 LNEETIM-KIM--KQKRYPSLEIEIP------------SDEEPCCICQEEYTDG--DN-- 662
             EE +   I+  K K Y      IP            S ++ C IC E+  D    N  
Sbjct: 134 RKEEDMFYAIINKKGKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMY 193

Query: 663 LGIL-DCGHDFHTNCIKQWLMQKNLCPICKTT 693
            GIL +C H F   CI  W  +KN CP+C+T 
Sbjct: 194 FGILSNCNHVFCIECIDIWKKEKNTCPVCRTP 225

Length = 238

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 53.5 bits (128), Expect = 2e-07
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 650 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKT 692
           C IC   +   D L +L C H FH  C+ +WL+   N CP+C+T
Sbjct: 326 CAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRT 369

Length = 374

>gnl|CDD|193335 pfam12861, zf-Apc11, Anaphase-promoting complex subunit 11 RING-H2 finger

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 14/78 (17%)

Query: 629 KIMKQKRYPSLEIEIPSDEEPCCICQEEYTD--------GDNLGIL--DCGHDFHTNCIK 678
           KI +     +   + PSD+  C IC+  +          GD+  ++   C H+FH +CI 
Sbjct: 4   KIKEWNAVATWTWDTPSDDV-CGICRVSFDGTCPQCKFPGDDCPLVWGKCKHNFHMHCIL 62

Query: 679 QWLMQ---KNLCPICKTT 693
           +WL     K LCP+C+ T
Sbjct: 63  KWLATETSKGLCPMCRQT 80

Apc11 is one of the subunits of the anaphase-promoting complex or cyclosome. The APC subunits are cullin family proteins with ubiquitin ligase activity. Polyubiquitination marks proteins for degradation by the 26S proteasome and is carried out by a cascade of enzymes that includes ubiquitin-activating enzymes (E1s), ubiquitin-conjugating enzymes (E2s), and ubiquitin ligases (E3s). Apc11 acts as an E3 enzyme and is responsible for recruiting E2s to the APC and for mediating the subsequent transfer of ubiquitin to APC substrates in vivo. In Saccharomyces cerevisiae this RING-H2 finger protein defines the minimal ubiquitin ligase activity of the APC, and the integrity of the RING-H2 finger is essential for budding yeast cell viability. Length = 85

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 49.2 bits (117), Expect = 6e-06
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 11/70 (15%)

Query: 633 QKRYPSLEIE-IPSDEEPCCICQEEYTDGDNLGI----------LDCGHDFHTNCIKQWL 681
              YP+   E + + +  C IC +E    D+  +          L CGH  H +C+K WL
Sbjct: 272 NAMYPTATEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWL 331

Query: 682 MQKNLCPICK 691
            ++  CPIC+
Sbjct: 332 ERQQTCPICR 341

Length = 491

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 5/48 (10%)

Query: 646 DEEPCCICQEEYTDGDNLGILDCGH-DFHTNCIKQWLMQKNLCPICKT 692
           +++ C IC E      N+  L CGH      C K+   +K  CPIC+ 
Sbjct: 1   EDDLCVICLERPR---NVVFLPCGHLCLCEECAKRLRSKKK-CPICRQ 44

Length = 49

>gnl|CDD|128983 smart00744, RINGv, The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 8/49 (16%)

Query: 650 CCICQEEYTDGDNLGILDCG-----HDFHTNCIKQWLMQKN--LCPICK 691
           C IC +E  +GD L +  C         H  C+++W+ +     C ICK
Sbjct: 2   CRICHDEGDEGDPL-VSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Classical RING domain: C-x (2) -C-x (9-39)-C-x(1-3)-H-x(2-3)-C-x(2)-C-x(4-48) -C-x(2)-C. Length = 49

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	697
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.42
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.37
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.12
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.07
PHA02929	238	N1R/p28-like protein; Provisional	99.07
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	99.01
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.99
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.95
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.93
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.88
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.81
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.79
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.76
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.67
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.67
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.66
PHA02926	242	zinc finger-like protein; Provisional	98.62
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.61
PF14634	44	zf-RING_5: zinc-RING finger domain	98.6
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.54
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.54
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.53
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.42
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.29
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.24
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.21
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	98.18
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.12
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.12
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.1
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	98.08
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.07
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	97.99
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	97.97
COG5219	1525	Uncharacterized conserved protein, contains RING Z	97.91
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	97.82
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	97.76
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	97.73
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.66
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.56
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	97.56
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.52
KOG4445	368	consensus Uncharacterized conserved protein, conta	97.42
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.36
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.3
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.22
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.15
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	96.83
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	96.82
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	96.81
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	96.77
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.76
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.66
COG5152	259	Uncharacterized conserved protein, contains RING a	96.64
KOG2660	331	consensus Locus-specific chromosome binding protei	96.62
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	96.61
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	96.41
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.32
KOG1002	791	consensus Nucleotide excision repair protein RAD16	96.15
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.02
KOG3039	303	consensus Uncharacterized conserved protein [Funct	95.97
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	95.93
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	95.77
COG5222	427	Uncharacterized conserved protein, contains RING Z	95.69
PHA03096	284	p28-like protein; Provisional	95.41
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	95.31
COG5236	493	Uncharacterized conserved protein, contains RING Z	95.23
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	95.04
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	94.95
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	94.88
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	94.86
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	94.81
PF04641	260	Rtf2: Rtf2 RING-finger	94.73
PHA02825	162	LAP/PHD finger-like protein; Provisional	94.65
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	94.38
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	94.3
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	94.07
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	93.67
PHA02862	156	5L protein; Provisional	93.66
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	93.38
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	93.32
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	93.21
KOG1001	674	consensus Helicase-like transcription factor HLTF/	92.99
KOG0298	1394	consensus DEAD box-containing helicase-like transc	92.53
COG5175	480	MOT2 Transcriptional repressor [Transcription]	91.69
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	91.33
KOG1940	276	consensus Zn-finger protein [General function pred	91.07
KOG3002	299	consensus Zn finger protein [General function pred	90.6
KOG1829	580	consensus Uncharacterized conserved protein, conta	89.85
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	89.48
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	89.17
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	88.65
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	87.69
KOG1609	323	consensus Protein involved in mRNA turnover and st	87.59
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	86.81
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	85.95
KOG3053	293	consensus Uncharacterized conserved protein [Funct	85.26
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	85.21
KOG1812	384	consensus Predicted E3 ubiquitin ligase [Posttrans	85.11
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	82.77
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	82.3
KOG0825	1134	consensus PHD Zn-finger protein [General function	82.19
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	81.43

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=8.1e-14  Score=149.37  Aligned_cols=49  Identities=49%  Similarity=1.151  Sum_probs=45.3

Q ss_pred             CcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCC-CCcCCCCCcCC
Q 005412          648 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN-LCPICKTTGLP  696 (697)
Q Consensus       648 e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qkn-sCPICRk~LLp  696 (697)
                      ..|+||+|+|+.+++++.|||+|.||..||++||.+.. .||+||+.+..
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~  279 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT  279 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence            68999999999999999999999999999999999875 59999997654

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.37  E-value=1.7e-13  Score=105.65  Aligned_cols=44  Identities=50%  Similarity=1.238  Sum_probs=40.6

Q ss_pred             CcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCC
Q 005412          648 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK  691 (697)
Q Consensus       648 e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICR  691 (697)
                      +.|+||+++|..++.++.|+|+|.||.+||.+|++.+..||+||
T Consensus         1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence            46999999999999999999999999999999999999999997

...

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=3.1e-11  Score=126.27  Aligned_cols=51  Identities=37%  Similarity=1.002  Sum_probs=47.6

Q ss_pred             CCCcccccccccCCCCceEEeCCCChhcHHHHHHHHh-cCCCCcCCCCCcCC
Q 005412          646 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-QKNLCPICKTTGLP  696 (697)
Q Consensus       646 ~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~-qknsCPICRk~LLp  696 (697)
                      ..-+|+|||++|...++++.|||.|.||..||++|+. .++.||+||.++.|
T Consensus       322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            4478999999999999999999999999999999999 78999999999876

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.07  E-value=9.2e-11  Score=100.44  Aligned_cols=47  Identities=43%  Similarity=0.960  Sum_probs=37.6

Q ss_pred             CCCCcccccccccCCC----------CceEEeCCCChhcHHHHHHHHhcCCCCcCCC
Q 005412          645 SDEEPCCICQEEYTDG----------DNLGILDCGHDFHTNCIKQWLMQKNLCPICK  691 (697)
Q Consensus       645 ~~~e~C~ICLEefe~g----------e~V~~LpCGH~FH~~CI~qWL~qknsCPICR  691 (697)
                      ..++.|+||++.|.+.          ..+...+|||.||..||.+||+.+.+||+||
T Consensus        17 ~~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   17 IADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             SCCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             CcCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            3455699999999432          2355568999999999999999999999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.07  E-value=1.3e-10  Score=119.98  Aligned_cols=51  Identities=35%  Similarity=0.837  Sum_probs=42.2

Q ss_pred             CCCCcccccccccCCCCc----e-EEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          645 SDEEPCCICQEEYTDGDN----L-GILDCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       645 ~~~e~C~ICLEefe~ge~----V-~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      ..+..|+||++.+..++.    + +.++|+|.||.+||.+|++.+.+||+||..+.
T Consensus       172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~  227 (238)
T PHA02929        172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI  227 (238)
T ss_pred             CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence            456889999999876431    2 34479999999999999999999999998764

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=1.6e-10  Score=123.66  Aligned_cols=53  Identities=32%  Similarity=0.896  Sum_probs=44.9

Q ss_pred             CCCCCCCcccccccc-cCCCC---------ceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCc
Q 005412          642 EIPSDEEPCCICQEE-YTDGD---------NLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG  694 (697)
Q Consensus       642 ~~~~~~e~C~ICLEe-fe~ge---------~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~L  694 (697)
                      ....++..|.||+|+ |+.++         .-.+|||||+||..|++.|++++.+||+||.++
T Consensus       282 ql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~  344 (491)
T COG5243         282 QLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV  344 (491)
T ss_pred             hhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence            346678899999999 55432         247899999999999999999999999999985

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=2.2e-10  Score=119.59  Aligned_cols=50  Identities=32%  Similarity=0.816  Sum_probs=45.4

Q ss_pred             CCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcCC
Q 005412          644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP  696 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LLp  696 (697)
                      .....+|.||||....+   ..+||||+||+.||..|...+..||+||..+.|
T Consensus       236 ~~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~p  285 (293)
T KOG0317|consen  236 PEATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKAECPLCREKFQP  285 (293)
T ss_pred             CCCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccccCCCcccccCCC
Confidence            44567899999999888   899999999999999999999999999998765

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.95  E-value=7.1e-10  Score=110.91  Aligned_cols=49  Identities=31%  Similarity=0.709  Sum_probs=41.3

Q ss_pred             CCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhc----------------CCCCcCCCCCcC
Q 005412          644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ----------------KNLCPICKTTGL  695 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~q----------------knsCPICRk~LL  695 (697)
                      ..++..|+||++.++++   ++++|||.||+.||.+|+..                +..||+||+.+.
T Consensus        15 ~~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is   79 (193)
T PLN03208         15 SGGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS   79 (193)
T ss_pred             CCCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence            34567899999999877   77899999999999999862                346999999874

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=4.9e-10  Score=114.09  Aligned_cols=49  Identities=33%  Similarity=0.639  Sum_probs=42.4

Q ss_pred             CCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhc---CCCCcCCCCCcC
Q 005412          644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ---KNLCPICKTTGL  695 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~q---knsCPICRk~LL  695 (697)
                      .....+|.||||.-+++   +++.|||+||+.||.+||..   +..||+||..+.
T Consensus        44 ~~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs   95 (230)
T KOG0823|consen   44 DGGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS   95 (230)
T ss_pred             CCCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence            45668899999998888   88899999999999999984   456999998764

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=1.2e-09  Score=107.49  Aligned_cols=57  Identities=26%  Similarity=0.509  Sum_probs=46.4

Q ss_pred             CcccCCCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          638 SLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       638 ~~e~~~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      .+..........|+|||+.|.... .+.+.|||+||+.||+..++....||+|++.+.
T Consensus       122 ~v~~~~~~~~~~CPiCl~~~sek~-~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt  178 (187)
T KOG0320|consen  122 DVDPLRKEGTYKCPICLDSVSEKV-PVSTKCGHVFCSQCIKDALKNTNKCPTCRKKIT  178 (187)
T ss_pred             cccccccccccCCCceecchhhcc-ccccccchhHHHHHHHHHHHhCCCCCCcccccc
Confidence            344445566689999999998652 245799999999999999999999999998653

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.81  E-value=4.3e-09  Score=78.50  Aligned_cols=44  Identities=45%  Similarity=1.077  Sum_probs=36.7

Q ss_pred             cccccccccCCCCceEEeCCCChhcHHHHHHHHhc-CCCCcCCCCCc
Q 005412          649 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTG  694 (697)
Q Consensus       649 ~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~q-knsCPICRk~L  694 (697)
                      .|+||++.+..  .+..++|+|.||..|++.|++. ...||+||+.+
T Consensus         1 ~C~iC~~~~~~--~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFRE--PVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhC--ceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            59999999833  3445569999999999999997 77899999864

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.79  E-value=3.1e-09  Score=84.18  Aligned_cols=46  Identities=39%  Similarity=0.819  Sum_probs=39.6

Q ss_pred             CCcccccccccCCCCceEEeCCCCh-hcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          647 EEPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       647 ~e~C~ICLEefe~ge~V~~LpCGH~-FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      +..|.||++....   +..+||||. ||..|+.+|++.+..||+||+++.
T Consensus         2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            4679999998665   588899999 999999999999999999999874

...

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.76  E-value=4.9e-09  Score=79.10  Aligned_cols=39  Identities=38%  Similarity=1.022  Sum_probs=33.7

Q ss_pred             ccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCC
Q 005412          650 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPIC  690 (697)
Q Consensus       650 C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPIC  690 (697)
                      |+||++.+.+.  ++.++|||.||+.||.+|++.+..||+|
T Consensus         1 C~iC~~~~~~~--~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDP--VVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSE--EEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccCc--CEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            89999998873  5678999999999999999998899998

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.67  E-value=1.1e-08  Score=78.99  Aligned_cols=38  Identities=34%  Similarity=0.857  Sum_probs=30.9

Q ss_pred             ccccccccCCCCceEEeCCCChhcHHHHHHHHhcC----CCCcCC
Q 005412          650 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPIC  690 (697)
Q Consensus       650 C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qk----nsCPIC  690 (697)
                      |+||++.|+++   +.|+|||.||+.||.+|++..    ..||+|
T Consensus         1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            89999999999   999999999999999999853    369998

>smart00504 Ubox Modified RING finger domain

Probab=98.67  E-value=2e-08  Score=81.87  Aligned_cols=45  Identities=24%  Similarity=0.411  Sum_probs=41.2

Q ss_pred             CcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          648 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       648 e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      ..|+||++.+.++   +.++|||+|++.||.+|++.+..||+|++.+.
T Consensus         2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~   46 (63)
T smart00504        2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHGTDPVTGQPLT   46 (63)
T ss_pred             cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence            4699999999988   78899999999999999999899999998763

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=7.8e-09  Score=117.87  Aligned_cols=52  Identities=38%  Similarity=0.906  Sum_probs=45.5

Q ss_pred             CCCCCcccccccccCCCCc--eEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          644 PSDEEPCCICQEEYTDGDN--LGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~ge~--V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      ...+..|+||+|++..+..  ..+|+|+|+||..|++.||+++.+||+||..+.
T Consensus       288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~  341 (543)
T KOG0802|consen  288 ALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLY  341 (543)
T ss_pred             hhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhh
Confidence            3457889999999998654  588999999999999999999999999998543

>PHA02926 zinc finger-like protein; Provisional

Probab=98.62  E-value=2.3e-08  Score=101.72  Aligned_cols=51  Identities=37%  Similarity=0.796  Sum_probs=39.0

Q ss_pred             CCCCCcccccccccCCC-----CceEEe-CCCChhcHHHHHHHHhcC------CCCcCCCCCc
Q 005412          644 PSDEEPCCICQEEYTDG-----DNLGIL-DCGHDFHTNCIKQWLMQK------NLCPICKTTG  694 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~g-----e~V~~L-pCGH~FH~~CI~qWL~qk------nsCPICRk~L  694 (697)
                      ...+.+|.||+|..-..     ...+.| +|+|.||..||++|...+      ..||+||..+
T Consensus       167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f  229 (242)
T PHA02926        167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRF  229 (242)
T ss_pred             ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCccee
Confidence            44568899999986432     123455 799999999999999853      4599999865

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.61  E-value=3.3e-08  Score=87.35  Aligned_cols=50  Identities=36%  Similarity=0.938  Sum_probs=40.1

Q ss_pred             CCCCcccccccccCC--------CC--ceEEeCCCChhcHHHHHHHHhc---CCCCcCCCCCc
Q 005412          645 SDEEPCCICQEEYTD--------GD--NLGILDCGHDFHTNCIKQWLMQ---KNLCPICKTTG  694 (697)
Q Consensus       645 ~~~e~C~ICLEefe~--------ge--~V~~LpCGH~FH~~CI~qWL~q---knsCPICRk~L  694 (697)
                      ..++.|.||...|+.        ++  .++.-.|+|.||..||.+||..   +..||+||++.
T Consensus        19 ~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w   81 (85)
T PF12861_consen   19 ANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPW   81 (85)
T ss_pred             CCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence            347889999999982        11  3455589999999999999995   56899999864

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.60  E-value=3.6e-08  Score=76.45  Aligned_cols=44  Identities=34%  Similarity=0.835  Sum_probs=38.5

Q ss_pred             cccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCC
Q 005412          649 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT  692 (697)
Q Consensus       649 ~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk  692 (697)
                      .|.||++.|........|.|||+||..||.++......||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            49999999965566788899999999999999866778999986

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.54  E-value=4.3e-08  Score=107.85  Aligned_cols=49  Identities=24%  Similarity=0.665  Sum_probs=43.4

Q ss_pred             CCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      ......|.||++.|..+   ++++|||.||..||..||.....||+||..+.
T Consensus        23 Le~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~   71 (397)
T TIGR00599        23 LDTSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQ   71 (397)
T ss_pred             cccccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCCCCCCCCCccc
Confidence            44567899999999887   67899999999999999998889999998764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.54  E-value=4.2e-08  Score=74.15  Aligned_cols=39  Identities=41%  Similarity=1.128  Sum_probs=34.1

Q ss_pred             ccccccccCCCCceEEeCCCChhcHHHHHHHHh--cCCCCcCC
Q 005412          650 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM--QKNLCPIC  690 (697)
Q Consensus       650 C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~--qknsCPIC  690 (697)
                      |+||++.+...  +..++|||.||.+||.+|++  ....||+|
T Consensus         1 C~iC~~~~~~~--~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDP--VILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSE--EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCC--CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            89999999877  24789999999999999999  45669998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>smart00184 RING Ring finger

Probab=98.53  E-value=9.6e-08  Score=68.73  Aligned_cols=38  Identities=50%  Similarity=1.196  Sum_probs=32.9

Q ss_pred             ccccccccCCCCceEEeCCCChhcHHHHHHHHh-cCCCCcCC
Q 005412          650 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-QKNLCPIC  690 (697)
Q Consensus       650 C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~-qknsCPIC  690 (697)
                      |+||++...   .+..++|+|.||..||+.|++ .+..||+|
T Consensus         1 C~iC~~~~~---~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELK---DPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCC---CcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            889999843   458889999999999999999 56779998

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=1.1e-07  Score=98.67  Aligned_cols=49  Identities=31%  Similarity=0.721  Sum_probs=43.7

Q ss_pred             CCCCcccccccccCCCCceEEeCCCChhcHHHHHH-HHhcCCC-CcCCCCCcCC
Q 005412          645 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQ-WLMQKNL-CPICKTTGLP  696 (697)
Q Consensus       645 ~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~q-WL~qkns-CPICRk~LLp  696 (697)
                      ..+.+|.||++.....   ..++|||+||+.||.. |-+++.. ||+||+.+.+
T Consensus       213 ~~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p  263 (271)
T COG5574         213 LADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP  263 (271)
T ss_pred             ccccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence            4578899999998887   8999999999999999 9888776 9999998765

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.29  E-value=6.4e-07  Score=78.14  Aligned_cols=45  Identities=40%  Similarity=0.782  Sum_probs=33.4

Q ss_pred             ccccccccCCCCc--eEEeCCCChhcHHHHHHHHhcCCCCcCCCCCc
Q 005412          650 CCICQEEYTDGDN--LGILDCGHDFHTNCIKQWLMQKNLCPICKTTG  694 (697)
Q Consensus       650 C~ICLEefe~ge~--V~~LpCGH~FH~~CI~qWL~qknsCPICRk~L  694 (697)
                      |+-|+.....+++  ++.-.|.|.||..||.+||..++.||+||++.
T Consensus        34 C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w   80 (88)
T COG5194          34 CPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTW   80 (88)
T ss_pred             CcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCcee
Confidence            3334443333443  34447999999999999999999999999874

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.24  E-value=3.7e-07  Score=97.41  Aligned_cols=48  Identities=35%  Similarity=0.645  Sum_probs=43.5

Q ss_pred             CCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          645 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       645 ~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      +....|-||.|.|..+   .++||+|.||.-||+..|..+..||.|+.++.
T Consensus        21 D~lLRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~   68 (442)
T KOG0287|consen   21 DDLLRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVT   68 (442)
T ss_pred             HHHHHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCCCCCceecccc
Confidence            3456799999999999   88899999999999999999999999998753

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=6.2e-07  Score=100.12  Aligned_cols=47  Identities=34%  Similarity=0.596  Sum_probs=39.6

Q ss_pred             CCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcC-----CCCcCCCCCcCC
Q 005412          647 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK-----NLCPICKTTGLP  696 (697)
Q Consensus       647 ~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qk-----nsCPICRk~LLp  696 (697)
                      +..|+||+++....   ..+.|||+||..||.+.|...     ..||+||..+.+
T Consensus       186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~  237 (513)
T KOG2164|consen  186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL  237 (513)
T ss_pred             CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence            67899999998877   666799999999999998743     459999987654

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=7.1e-07  Score=98.88  Aligned_cols=53  Identities=28%  Similarity=0.684  Sum_probs=42.1

Q ss_pred             CCCCCcccccccccCCCCc--------------eEEeCCCChhcHHHHHHHHh-cCCCCcCCCCCcCC
Q 005412          644 PSDEEPCCICQEEYTDGDN--------------LGILDCGHDFHTNCIKQWLM-QKNLCPICKTTGLP  696 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~ge~--------------V~~LpCGH~FH~~CI~qWL~-qknsCPICRk~LLp  696 (697)
                      .....+|+|||.++..-..              -..+||.|+||..|+.+|+. .|-.||+||.++.+
T Consensus       568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            3455789999999873211              22459999999999999999 67799999998865

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.12  E-value=1.3e-06  Score=74.81  Aligned_cols=46  Identities=30%  Similarity=0.436  Sum_probs=37.8

Q ss_pred             CCcccccccccCCCCceEEeCCCChhcHHHHHHHHhc-CCCCcCCCCCcC
Q 005412          647 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGL  695 (697)
Q Consensus       647 ~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~q-knsCPICRk~LL  695 (697)
                      ...|+||.+-+.++   ++++|||.|.+.||.+||+. ...||+|+..+.
T Consensus         4 ~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~   50 (73)
T PF04564_consen    4 EFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLS   50 (73)
T ss_dssp             GGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-S
T ss_pred             ccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCC
Confidence            46799999999999   89999999999999999998 889999998764

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.12  E-value=1.2e-06  Score=91.92  Aligned_cols=47  Identities=28%  Similarity=0.653  Sum_probs=42.5

Q ss_pred             CCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCC
Q 005412          644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTT  693 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~  693 (697)
                      .+....|-||.+.|..+   ..++|||.||.-||+..|..+..||+||.+
T Consensus        22 LDs~lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~   68 (391)
T COG5432          22 LDSMLRCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQPFCPVCRED   68 (391)
T ss_pred             chhHHHhhhhhheeecc---eecccccchhHHHHHHHhcCCCCCcccccc
Confidence            34456799999999998   788999999999999999999999999975

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=1.1e-06  Score=87.08  Aligned_cols=45  Identities=31%  Similarity=0.775  Sum_probs=40.3

Q ss_pred             CCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCC
Q 005412          644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK  691 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICR  691 (697)
                      ..+...|+||++.|..+   ..++|+|.||..||..++.....||.||
T Consensus        10 ~~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr   54 (386)
T KOG2177|consen   10 LQEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCR   54 (386)
T ss_pred             ccccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccC
Confidence            44667899999999998   8889999999999999998556799999

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=9.6e-07  Score=91.98  Aligned_cols=52  Identities=31%  Similarity=0.713  Sum_probs=43.8

Q ss_pred             CCCCCCcccccccccCCCC-------ceEEeCCCChhcHHHHHHHHh--cCCCCcCCCCCc
Q 005412          643 IPSDEEPCCICQEEYTDGD-------NLGILDCGHDFHTNCIKQWLM--QKNLCPICKTTG  694 (697)
Q Consensus       643 ~~~~~e~C~ICLEefe~ge-------~V~~LpCGH~FH~~CI~qWL~--qknsCPICRk~L  694 (697)
                      ...++..|+||-..+....       .+.+|.|+|.||..||+-|-.  +|.+||.||+.+
T Consensus       220 khl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekV  280 (328)
T KOG1734|consen  220 KHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKV  280 (328)
T ss_pred             CCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHh
Confidence            4456788999999887655       578899999999999999955  688999999865

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.07  E-value=1.8e-06  Score=67.40  Aligned_cols=38  Identities=32%  Similarity=0.833  Sum_probs=22.6

Q ss_pred             ccccccccCCCC-ceEEeCCCChhcHHHHHHHHhcC----CCCc
Q 005412          650 CCICQEEYTDGD-NLGILDCGHDFHTNCIKQWLMQK----NLCP  688 (697)
Q Consensus       650 C~ICLEefe~ge-~V~~LpCGH~FH~~CI~qWL~qk----nsCP  688 (697)
                      |+||.| |..++ .-+.|+|||+||++||.+|+...    ..||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 76644 34778999999999999999843    3476

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=97.99  E-value=6.6e-06  Score=65.78  Aligned_cols=42  Identities=29%  Similarity=0.795  Sum_probs=33.3

Q ss_pred             cccccccccCCCCceEEeCCC-----ChhcHHHHHHHHhcC--CCCcCCC
Q 005412          649 PCCICQEEYTDGDNLGILDCG-----HDFHTNCIKQWLMQK--NLCPICK  691 (697)
Q Consensus       649 ~C~ICLEefe~ge~V~~LpCG-----H~FH~~CI~qWL~qk--nsCPICR  691 (697)
                      .|.||++ +.+++....+||.     |.||..|+.+|+..+  ..||+|+
T Consensus         1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            4899999 4444455578885     899999999999754  4899996

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=3.9e-06  Score=90.54  Aligned_cols=49  Identities=33%  Similarity=0.638  Sum_probs=43.4

Q ss_pred             CCCCcccccccccCCCCceEEeCCCCh-hcHHHHHHHHhcCCCCcCCCCCcCC
Q 005412          645 SDEEPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGLP  696 (697)
Q Consensus       645 ~~~e~C~ICLEefe~ge~V~~LpCGH~-FH~~CI~qWL~qknsCPICRk~LLp  696 (697)
                      +..++|.|||.+-++.   .+|||.|. .|..|.+...-+++.|||||+.+..
T Consensus       288 ~~gkeCVIClse~rdt---~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~  337 (349)
T KOG4265|consen  288 ESGKECVICLSESRDT---VVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE  337 (349)
T ss_pred             cCCCeeEEEecCCcce---EEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence            4468899999997776   99999999 9999999988889999999998754

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.91  E-value=5.7e-06  Score=97.08  Aligned_cols=53  Identities=28%  Similarity=0.676  Sum_probs=40.9

Q ss_pred             CCCCCCcccccccccCCCC----ceEEeCCCChhcHHHHHHHHhc--CCCCcCCCCCcC
Q 005412          643 IPSDEEPCCICQEEYTDGD----NLGILDCGHDFHTNCIKQWLMQ--KNLCPICKTTGL  695 (697)
Q Consensus       643 ~~~~~e~C~ICLEefe~ge----~V~~LpCGH~FH~~CI~qWL~q--knsCPICRk~LL  695 (697)
                      ...+.++|+||+..+..-+    .-++-.|+|+||..|+.+|++.  ..+||+||.++.
T Consensus      1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            4567789999998876211    1244569999999999999995  567999998764

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=4e-06  Score=72.69  Aligned_cols=52  Identities=37%  Similarity=0.845  Sum_probs=39.3

Q ss_pred             CCCCCCcccccccccCC--------CCc--eEEeCCCChhcHHHHHHHHhc---CCCCcCCCCCc
Q 005412          643 IPSDEEPCCICQEEYTD--------GDN--LGILDCGHDFHTNCIKQWLMQ---KNLCPICKTTG  694 (697)
Q Consensus       643 ~~~~~e~C~ICLEefe~--------ge~--V~~LpCGH~FH~~CI~qWL~q---knsCPICRk~L  694 (697)
                      -...++.|.||.-.|..        +|.  ++.-.|.|.||..||.+|+..   +..||+||++.
T Consensus        16 W~~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~   80 (84)
T KOG1493|consen   16 WDAPDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW   80 (84)
T ss_pred             EcCCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence            34556699999999883        222  222269999999999999984   45699999864

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=97.76  E-value=5.5e-06  Score=70.74  Aligned_cols=49  Identities=29%  Similarity=0.741  Sum_probs=23.3

Q ss_pred             CCcccccccccCCCCce---EEe--CCCChhcHHHHHHHHhc----C-------CCCcCCCCCcC
Q 005412          647 EEPCCICQEEYTDGDNL---GIL--DCGHDFHTNCIKQWLMQ----K-------NLCPICKTTGL  695 (697)
Q Consensus       647 ~e~C~ICLEefe~ge~V---~~L--pCGH~FH~~CI~qWL~q----k-------nsCPICRk~LL  695 (697)
                      +..|.||++.+.+.+++   +.-  .|+..||..||.+||..    +       ..||.|++++.
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            45799999987633322   222  59999999999999982    1       13999998763

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=1.8e-05  Score=72.24  Aligned_cols=51  Identities=27%  Similarity=0.713  Sum_probs=37.2

Q ss_pred             CCCCCCcccccccccC-------------CCC-ceEEeCCCChhcHHHHHHHHhcCCCCcCCCCC
Q 005412          643 IPSDEEPCCICQEEYT-------------DGD-NLGILDCGHDFHTNCIKQWLMQKNLCPICKTT  693 (697)
Q Consensus       643 ~~~~~e~C~ICLEefe-------------~ge-~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~  693 (697)
                      .+...+.|+||...+-             .++ .|.--.|.|.||..||.+||+.++.||+|.++
T Consensus        42 WDi~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~e  106 (114)
T KOG2930|consen   42 WDIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKE  106 (114)
T ss_pred             eeeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence            3455677887754332             111 23333799999999999999999999999875

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=7.2e-06  Score=88.34  Aligned_cols=49  Identities=27%  Similarity=0.530  Sum_probs=40.1

Q ss_pred             CCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhc-CCCCcCCCCCcC
Q 005412          645 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGL  695 (697)
Q Consensus       645 ~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~q-knsCPICRk~LL  695 (697)
                      ..+..|+|||+-++..  +....|.|.||.+||.+-|+. .+.||.||+.+.
T Consensus        41 ~~~v~c~icl~llk~t--mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~   90 (381)
T KOG0311|consen   41 DIQVICPICLSLLKKT--MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV   90 (381)
T ss_pred             hhhhccHHHHHHHHhh--cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence            4457799999998766  233369999999999999985 578999999764

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.56  E-value=1.4e-05  Score=92.65  Aligned_cols=51  Identities=20%  Similarity=0.349  Sum_probs=45.1

Q ss_pred             CCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          645 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       645 ~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      .....|++|+..|.+.......+|+|+||..||..|-+.-.+||+||..+.
T Consensus       121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~  171 (1134)
T KOG0825|consen  121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFG  171 (1134)
T ss_pred             hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhh
Confidence            345789999999998876677789999999999999999999999998764

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.56  E-value=2.1e-05  Score=64.43  Aligned_cols=45  Identities=29%  Similarity=0.617  Sum_probs=38.0

Q ss_pred             CcccccccccCCCCceEEeCCCCh-hcHHHHHHHHh-cCCCCcCCCCCcC
Q 005412          648 EPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLM-QKNLCPICKTTGL  695 (697)
Q Consensus       648 e~C~ICLEefe~ge~V~~LpCGH~-FH~~CI~qWL~-qknsCPICRk~LL  695 (697)
                      ++|.||+|.-.+.   +...|||. .|.+|-.+.++ .+..||+||.++.
T Consensus         8 dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    8 DECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             cceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            7899999987776   55689999 89999877766 7889999998764

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=4.2e-05  Score=83.21  Aligned_cols=50  Identities=40%  Similarity=0.990  Sum_probs=38.7

Q ss_pred             CCCCcccccccccCCCC----ceEEe-CCCChhcHHHHHHHH--hc-----CCCCcCCCCCc
Q 005412          645 SDEEPCCICQEEYTDGD----NLGIL-DCGHDFHTNCIKQWL--MQ-----KNLCPICKTTG  694 (697)
Q Consensus       645 ~~~e~C~ICLEefe~ge----~V~~L-pCGH~FH~~CI~qWL--~q-----knsCPICRk~L  694 (697)
                      ..+++|.||++...+.-    ..++| +|.|.||..||++|-  .+     .+.||.||...
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s  220 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS  220 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence            56788999999977642    13344 599999999999998  34     46799999753

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=97.42  E-value=7.5e-05  Score=79.18  Aligned_cols=53  Identities=21%  Similarity=0.621  Sum_probs=43.9

Q ss_pred             CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHh-----------------------cCCCCcCCCCCcC
Q 005412          643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-----------------------QKNLCPICKTTGL  695 (697)
Q Consensus       643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~-----------------------qknsCPICRk~LL  695 (697)
                      .....-.|.|||--|..++...++.|-|.||..|+.++|.                       .+..||+||..+.
T Consensus       111 nn~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~  186 (368)
T KOG4445|consen  111 NNHPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK  186 (368)
T ss_pred             CCCCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence            3445567999999999999999999999999999988773                       1235999998764

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.36  E-value=6.3e-05  Score=87.76  Aligned_cols=48  Identities=25%  Similarity=0.664  Sum_probs=40.3

Q ss_pred             CCCcccccccccCCCCceEEeCCCChhcHHHHHHHHh-cCCCCcCCCCCcCC
Q 005412          646 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-QKNLCPICKTTGLP  696 (697)
Q Consensus       646 ~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~-qknsCPICRk~LLp  696 (697)
                      ....|++|-..+++.   +++.|+|.||..||..-+. +...||.|.+.+-+
T Consensus       642 ~~LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga  690 (698)
T KOG0978|consen  642 ELLKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA  690 (698)
T ss_pred             hceeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence            346799999877665   7778999999999999998 56889999987654

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=97.30  E-value=4.3e-05  Score=64.53  Aligned_cols=43  Identities=30%  Similarity=0.736  Sum_probs=23.4

Q ss_pred             CcccccccccCCCCceEEe-CCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          648 EPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       648 e~C~ICLEefe~ge~V~~L-pCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      ..|.+|.+.++.+   +.| .|.|.||..||.+-+.  ..||+|+.++.
T Consensus         8 LrCs~C~~~l~~p---v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw   51 (65)
T PF14835_consen    8 LRCSICFDILKEP---VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAW   51 (65)
T ss_dssp             TS-SSS-S--SS----B---SSS--B-TTTGGGGTT--TB-SSS--B-S
T ss_pred             cCCcHHHHHhcCC---ceeccCccHHHHHHhHHhcC--CCCCCcCChHH
Confidence            5699999999887   554 7999999999988554  34999998763

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.22  E-value=0.00013  Score=80.89  Aligned_cols=50  Identities=24%  Similarity=0.745  Sum_probs=39.2

Q ss_pred             CCCCCcccccccccCCCCc-eEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          644 PSDEEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~ge~-V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      ..+.-+|+||||.+..... +..+.|.|.||-.|+.+|.  ..+||+||....
T Consensus       172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~  222 (493)
T KOG0804|consen  172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS  222 (493)
T ss_pred             cccCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence            3455689999999876532 3455799999999999994  568999998654

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.15  E-value=0.00028  Score=78.36  Aligned_cols=49  Identities=29%  Similarity=0.732  Sum_probs=43.7

Q ss_pred             CCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      ...+..|.||+..+..+   +.++|||.||..||.+-+-+...||+||.++.
T Consensus        81 ~~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~  129 (398)
T KOG4159|consen   81 IRSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQETECPLCRDELV  129 (398)
T ss_pred             ccchhhhhhhHhhcCCC---ccccccccccHHHHHHHhccCCCCcccccccc
Confidence            35678899999999888   78899999999999998888889999998775

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=96.83  E-value=0.00045  Score=75.68  Aligned_cols=46  Identities=33%  Similarity=0.763  Sum_probs=37.6

Q ss_pred             CcccccccccCCCCceEEeCCCChhcHHHHHHHHhc--CCCCcCCCCCcCC
Q 005412          648 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ--KNLCPICKTTGLP  696 (697)
Q Consensus       648 e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~q--knsCPICRk~LLp  696 (697)
                      +.|.||-|.   ++.|.+-||||..|..|+..|-..  ...||.||.++.-
T Consensus       370 eLCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG  417 (563)
T KOG1785|consen  370 ELCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG  417 (563)
T ss_pred             HHHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence            569999986   334567799999999999999863  5789999998764

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=96.82  E-value=0.00075  Score=82.25  Aligned_cols=52  Identities=33%  Similarity=0.625  Sum_probs=42.2

Q ss_pred             CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCC----------CCcCCCCCc
Q 005412          643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN----------LCPICKTTG  694 (697)
Q Consensus       643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qkn----------sCPICRk~L  694 (697)
                      ..+.++.|.||+.+--..-....|.|+|+||..|.+.-|++.-          .||+|+.++
T Consensus      3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~I 3543 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKI 3543 (3738)
T ss_pred             hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchh
Confidence            3456788999998876666678999999999999998887432          499999876

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.81  E-value=0.0011  Score=69.79  Aligned_cols=52  Identities=27%  Similarity=0.490  Sum_probs=41.8

Q ss_pred             CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhc--CCCCcCCCCCcCC
Q 005412          643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ--KNLCPICKTTGLP  696 (697)
Q Consensus       643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~q--knsCPICRk~LLp  696 (697)
                      ....+.+|++|-+.-..+  ....+|+|+||..||..-+.-  ..+||.|..++.+
T Consensus       235 ~~t~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~  288 (298)
T KOG2879|consen  235 TGTSDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEP  288 (298)
T ss_pred             cccCCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence            455678899999998877  244479999999999998764  4789999987763

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.77  E-value=0.00089  Score=72.51  Aligned_cols=49  Identities=33%  Similarity=0.571  Sum_probs=42.7

Q ss_pred             CCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      ..++..|+||+..-...   +..||+|.-|++||.+-|...+.|=.||+++.
T Consensus       419 ~sEd~lCpICyA~pi~A---vf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~  467 (489)
T KOG4692|consen  419 DSEDNLCPICYAGPINA---VFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI  467 (489)
T ss_pred             CcccccCcceecccchh---hccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence            46778899999875554   77799999999999999999999999999765

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.76  E-value=0.0006  Score=75.59  Aligned_cols=49  Identities=27%  Similarity=0.602  Sum_probs=43.3

Q ss_pred             CCCCCcccccccccCCCCceEE-eCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          644 PSDEEPCCICQEEYTDGDNLGI-LDCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~ge~V~~-LpCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      .+.+..|+||+..+.++   .. +.|||.||..||..|+..+..||.|+..+.
T Consensus        18 ~~~~l~C~~C~~vl~~p---~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~   67 (391)
T KOG0297|consen   18 LDENLLCPICMSVLRDP---VQTTTCGHRFCAGCLLESLSNHQKCPVCRQELT   67 (391)
T ss_pred             CcccccCccccccccCC---CCCCCCCCcccccccchhhccCcCCcccccccc
Confidence            45668899999999988   44 589999999999999999999999988764

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.66  E-value=0.00083  Score=55.51  Aligned_cols=43  Identities=26%  Similarity=0.600  Sum_probs=29.2

Q ss_pred             CCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhc--CCCCcC
Q 005412          645 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ--KNLCPI  689 (697)
Q Consensus       645 ~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~q--knsCPI  689 (697)
                      .....|+|.+..|+++  |+...|+|+|-++.|.+||..  ...||+
T Consensus         9 ~~~~~CPiT~~~~~~P--V~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen    9 TISLKCPITLQPFEDP--VKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             B--SB-TTTSSB-SSE--EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             EeccCCCCcCChhhCC--cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            3457899999999877  555689999999999999943  445999

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=96.64  E-value=0.00095  Score=67.53  Aligned_cols=45  Identities=24%  Similarity=0.637  Sum_probs=40.2

Q ss_pred             CCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCC
Q 005412          646 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTT  693 (697)
Q Consensus       646 ~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~  693 (697)
                      -...|.||.++|+.+   +++.|||.||..|.-.-++....|-+|-+.
T Consensus       195 IPF~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~  239 (259)
T COG5152         195 IPFLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGDECGVCGKA  239 (259)
T ss_pred             Cceeehhchhhccch---hhhhcchhHHHHHHHHHhccCCcceecchh
Confidence            345799999999998   888999999999999988888999999764

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=96.62  E-value=0.00069  Score=72.90  Aligned_cols=50  Identities=26%  Similarity=0.598  Sum_probs=41.7

Q ss_pred             CCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      ......|.+|-..|.+.  ..+..|-|.||+.||.+.|+..+.||+|...+.
T Consensus        12 ~n~~itC~LC~GYliDA--TTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih   61 (331)
T KOG2660|consen   12 LNPHITCRLCGGYLIDA--TTITECLHTFCKSCIVKYLEESKYCPTCDIVIH   61 (331)
T ss_pred             cccceehhhccceeecc--hhHHHHHHHHHHHHHHHHHHHhccCCccceecc
Confidence            44567899999999887  233369999999999999999999999987553

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.61  E-value=0.00083  Score=71.29  Aligned_cols=42  Identities=38%  Similarity=0.765  Sum_probs=34.8

Q ss_pred             CCcccccccccCCCCceEEeCCCCh-hcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          647 EEPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       647 ~e~C~ICLEefe~ge~V~~LpCGH~-FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      ...|.||++...+.   +.|+|||. -|.+|-+.    -+.|||||+.++
T Consensus       300 ~~LC~ICmDaP~DC---vfLeCGHmVtCt~CGkr----m~eCPICRqyi~  342 (350)
T KOG4275|consen  300 RRLCAICMDAPRDC---VFLECGHMVTCTKCGKR----MNECPICRQYIV  342 (350)
T ss_pred             HHHHHHHhcCCcce---EEeecCcEEeehhhccc----cccCchHHHHHH
Confidence            67899999998777   89999997 78888655    348999998653

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.41  E-value=0.0037  Score=69.14  Aligned_cols=48  Identities=31%  Similarity=0.600  Sum_probs=39.7

Q ss_pred             CCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhc--------CCCCcCCCCC
Q 005412          646 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ--------KNLCPICKTT  693 (697)
Q Consensus       646 ~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~q--------knsCPICRk~  693 (697)
                      ....|.||+++....+-+..|||+|+||+.|++.++..        .-.||-|+..
T Consensus       183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~  238 (445)
T KOG1814|consen  183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG  238 (445)
T ss_pred             hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence            44679999999888788999999999999999999872        2349877653

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.32  E-value=0.0014  Score=71.78  Aligned_cols=46  Identities=33%  Similarity=0.725  Sum_probs=38.9

Q ss_pred             CCcccccccccCCC-CceEEeCCCChhcHHHHHHHHhcC--CCCcCCCC
Q 005412          647 EEPCCICQEEYTDG-DNLGILDCGHDFHTNCIKQWLMQK--NLCPICKT  692 (697)
Q Consensus       647 ~e~C~ICLEefe~g-e~V~~LpCGH~FH~~CI~qWL~qk--nsCPICRk  692 (697)
                      +..|..|-+.+... +.+-.|||.|+||..|+...|++.  .+||.||+
T Consensus       365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            45699999998754 467889999999999999999864  57999994

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=96.15  E-value=0.0024  Score=72.20  Aligned_cols=49  Identities=27%  Similarity=0.573  Sum_probs=39.5

Q ss_pred             CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHh-----cCCCCcCCCCCc
Q 005412          643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-----QKNLCPICKTTG  694 (697)
Q Consensus       643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~-----qknsCPICRk~L  694 (697)
                      .......|.+|.+.-++.   ....|.|+||+-||+.++.     ..-+||+|-..+
T Consensus       532 enk~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~L  585 (791)
T KOG1002|consen  532 ENKGEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGL  585 (791)
T ss_pred             cccCceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccc
Confidence            344567899999987766   7788999999999999886     245799998754

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.02  E-value=0.0052  Score=72.82  Aligned_cols=44  Identities=23%  Similarity=0.655  Sum_probs=36.1

Q ss_pred             CCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCC
Q 005412          645 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTT  693 (697)
Q Consensus       645 ~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~  693 (697)
                      ....+|..|--.++.+  ++...|||.||.+|+.   .....||.|+.+
T Consensus       838 ~q~skCs~C~~~LdlP--~VhF~CgHsyHqhC~e---~~~~~CP~C~~e  881 (933)
T KOG2114|consen  838 FQVSKCSACEGTLDLP--FVHFLCGHSYHQHCLE---DKEDKCPKCLPE  881 (933)
T ss_pred             eeeeeecccCCccccc--eeeeecccHHHHHhhc---cCcccCCccchh
Confidence            3446899999998877  5677899999999998   455779999874

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.97  E-value=0.0053  Score=64.04  Aligned_cols=50  Identities=14%  Similarity=0.334  Sum_probs=44.7

Q ss_pred             CCCcccccccccCCCCceEEe-CCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          646 DEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       646 ~~e~C~ICLEefe~ge~V~~L-pCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      ..+.|+||.+.+...-....| +|||+|+++|+.+.+.....||+|-+++.
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plk  270 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLK  270 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCc
Confidence            457899999999988777777 89999999999999999999999988764

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.93  E-value=0.0031  Score=67.24  Aligned_cols=45  Identities=22%  Similarity=0.530  Sum_probs=40.4

Q ss_pred             CCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCc
Q 005412          647 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG  694 (697)
Q Consensus       647 ~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~L  694 (697)
                      ...|-||..+|..+   +++.|+|.||..|...-++....|.+|-+..
T Consensus       241 Pf~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t  285 (313)
T KOG1813|consen  241 PFKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGEKCYVCSQQT  285 (313)
T ss_pred             Cccccccccccccc---hhhcCCceeehhhhccccccCCcceeccccc
Confidence            45699999999999   8999999999999999888889999997753

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.77  E-value=0.0076  Score=62.19  Aligned_cols=48  Identities=29%  Similarity=0.662  Sum_probs=39.3

Q ss_pred             CcccccccccCCCCceEEeCCCChhcHHHHHHHHhc--------CCCCcCCCCCcCC
Q 005412          648 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ--------KNLCPICKTTGLP  696 (697)
Q Consensus       648 e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~q--------knsCPICRk~LLp  696 (697)
                      --|.+|--.+..+| ...|.|-|+||++|+..|-..        ...||-|..++.|
T Consensus        51 pNC~LC~t~La~gd-t~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP  106 (299)
T KOG3970|consen   51 PNCRLCNTPLASGD-TTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP  106 (299)
T ss_pred             CCCceeCCccccCc-ceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence            45899988888764 457889999999999999763        2359999999876

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.69  E-value=0.0061  Score=65.05  Aligned_cols=43  Identities=28%  Similarity=0.620  Sum_probs=35.7

Q ss_pred             CCcccccccccCCCCceEEeC-CCChhcHHHHHHHHhc-CCCCcCCCC
Q 005412          647 EEPCCICQEEYTDGDNLGILD-CGHDFHTNCIKQWLMQ-KNLCPICKT  692 (697)
Q Consensus       647 ~e~C~ICLEefe~ge~V~~Lp-CGH~FH~~CI~qWL~q-knsCPICRk  692 (697)
                      ...|+.|..-+...   ..++ |+|.||..||..-|.. ...||.|-+
T Consensus       274 ~LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         274 SLKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             cccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCccc
Confidence            37899999988877   5554 9999999999988775 578999954

>PHA03096 p28-like protein; Provisional

Probab=95.41  E-value=0.008  Score=64.32  Aligned_cols=45  Identities=33%  Similarity=0.683  Sum_probs=33.4

Q ss_pred             CcccccccccCCC----CceEEe-CCCChhcHHHHHHHHhc---CCCCcCCCC
Q 005412          648 EPCCICQEEYTDG----DNLGIL-DCGHDFHTNCIKQWLMQ---KNLCPICKT  692 (697)
Q Consensus       648 e~C~ICLEefe~g----e~V~~L-pCGH~FH~~CI~qWL~q---knsCPICRk  692 (697)
                      ..|.||++.....    ..-..| .|.|.||..||+.|-..   +.+||.||.
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~  231 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR  231 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence            7799999987743    234566 59999999999999874   344555553

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=95.31  E-value=0.0081  Score=57.70  Aligned_cols=36  Identities=25%  Similarity=0.569  Sum_probs=30.0

Q ss_pred             CCcccccccccCCCCceEEeCCC------ChhcHHHHHHHHh
Q 005412          647 EEPCCICQEEYTDGDNLGILDCG------HDFHTNCIKQWLM  682 (697)
Q Consensus       647 ~e~C~ICLEefe~ge~V~~LpCG------H~FH~~CI~qWL~  682 (697)
                      ..+|.||++.+...+-++.++|+      |.||.+|+++|-.
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~   67 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR   67 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence            46799999999985557777777      8999999999943

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.23  E-value=0.016  Score=63.02  Aligned_cols=50  Identities=26%  Similarity=0.607  Sum_probs=40.3

Q ss_pred             cCCCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHH--HhcCCCCcCCCCC
Q 005412          641 IEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQW--LMQKNLCPICKTT  693 (697)
Q Consensus       641 ~~~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qW--L~qknsCPICRk~  693 (697)
                      .+.+++...|.||-+.+.-.   ..+||+|..|--|....  |-.++.||+||++
T Consensus        55 ddtDEen~~C~ICA~~~TYs---~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE  106 (493)
T COG5236          55 DDTDEENMNCQICAGSTTYS---ARYPCGHQICHACAVRLRALYMQKGCPLCRTE  106 (493)
T ss_pred             cccccccceeEEecCCceEE---EeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence            34566678899999986544   78899999999998764  4578899999985

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.04  E-value=0.012  Score=64.34  Aligned_cols=45  Identities=22%  Similarity=0.537  Sum_probs=32.9

Q ss_pred             CCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCc
Q 005412          644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG  694 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~L  694 (697)
                      ......|.||+++....   ..+||||.-|  |+.--.. -..||+||+.+
T Consensus       302 ~~~p~lcVVcl~e~~~~---~fvpcGh~cc--ct~cs~~-l~~CPvCR~rI  346 (355)
T KOG1571|consen  302 LPQPDLCVVCLDEPKSA---VFVPCGHVCC--CTLCSKH-LPQCPVCRQRI  346 (355)
T ss_pred             cCCCCceEEecCCccce---eeecCCcEEE--chHHHhh-CCCCchhHHHH
Confidence            33456799999998775   8899999966  6554322 34499999865

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.95  E-value=0.01  Score=70.81  Aligned_cols=38  Identities=21%  Similarity=0.590  Sum_probs=30.5

Q ss_pred             CCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHh
Q 005412          644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM  682 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~  682 (697)
                      .+..+.|.+|.-.+-.. ...+.+|||.||++||.+-..
T Consensus       814 ~ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v~  851 (911)
T KOG2034|consen  814 LEPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHVL  851 (911)
T ss_pred             ecCccchHHhcchhhcC-cceeeeccchHHHHHHHHHHH
Confidence            45678899999988764 456779999999999988654

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.88  E-value=0.0075  Score=59.53  Aligned_cols=32  Identities=31%  Similarity=0.706  Sum_probs=28.5

Q ss_pred             CCCCCCcccccccccCCCCceEEeCCCChhcH
Q 005412          643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHT  674 (697)
Q Consensus       643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~  674 (697)
                      ..++.-+|.||||+++.++.+..|||-.+||+
T Consensus       173 L~ddkGECvICLEdL~~GdtIARLPCLCIYHK  204 (205)
T KOG0801|consen  173 LKDDKGECVICLEDLEAGDTIARLPCLCIYHK  204 (205)
T ss_pred             hcccCCcEEEEhhhccCCCceeccceEEEeec
Confidence            34556789999999999999999999999996

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=94.86  E-value=0.011  Score=52.73  Aligned_cols=34  Identities=26%  Similarity=0.730  Sum_probs=28.2

Q ss_pred             CCCCCcccccccccCCCCceEEeCCCChhcHHHHH
Q 005412          644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIK  678 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~  678 (697)
                      ......|.||-..+.. ......||||+||..|++
T Consensus        75 i~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   75 ITESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             ECCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence            3456779999999987 466777999999999985

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=94.81  E-value=0.02  Score=46.17  Aligned_cols=44  Identities=27%  Similarity=0.692  Sum_probs=23.0

Q ss_pred             ccccccccCCCC-ceEEeCCCChhcHHHHHHHHh-cCCCCcCCCCC
Q 005412          650 CCICQEEYTDGD-NLGILDCGHDFHTNCIKQWLM-QKNLCPICKTT  693 (697)
Q Consensus       650 C~ICLEefe~ge-~V~~LpCGH~FH~~CI~qWL~-qknsCPICRk~  693 (697)
                      |++|.+++...+ .+.--+|++..|..|..+-++ ....||-||++
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~   46 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREP   46 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence            789999994432 233336999999999888876 47789999986

>PF04641 Rtf2: Rtf2 RING-finger

Probab=94.73  E-value=0.028  Score=59.19  Aligned_cols=51  Identities=20%  Similarity=0.462  Sum_probs=40.2

Q ss_pred             CCCCCcccccccccCCCCceEEe-CCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          644 PSDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~ge~V~~L-pCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      ......|+|+..+|......+.| +|||+|...||++- .....||+|-+++.
T Consensus       110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~  161 (260)
T PF04641_consen  110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFT  161 (260)
T ss_pred             CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccc
Confidence            45567899999999665555555 89999999999997 33567999988754

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=94.65  E-value=0.037  Score=54.66  Aligned_cols=48  Identities=25%  Similarity=0.686  Sum_probs=35.0

Q ss_pred             CCCCCCcccccccccCCCCceEEeCCC--C---hhcHHHHHHHHhcC--CCCcCCCCCc
Q 005412          643 IPSDEEPCCICQEEYTDGDNLGILDCG--H---DFHTNCIKQWLMQK--NLCPICKTTG  694 (697)
Q Consensus       643 ~~~~~e~C~ICLEefe~ge~V~~LpCG--H---~FH~~CI~qWL~qk--nsCPICRk~L  694 (697)
                      ....+..|-||.++...  .  .-||.  .   .-|..|+.+|+..+  ..|++|+++.
T Consensus         4 ~s~~~~~CRIC~~~~~~--~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y   58 (162)
T PHA02825          4 VSLMDKCCWICKDEYDV--V--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPY   58 (162)
T ss_pred             cCCCCCeeEecCCCCCC--c--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence            34566789999998542  2  24655  4   56999999999854  5699999764

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=94.38  E-value=0.035  Score=60.19  Aligned_cols=50  Identities=22%  Similarity=0.491  Sum_probs=40.4

Q ss_pred             CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCc
Q 005412          643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG  694 (697)
Q Consensus       643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~L  694 (697)
                      ...+...|+||+.....+  .++..-|-+||..||.+.+...+.||+--.++
T Consensus       296 l~~~~~~CpvClk~r~Np--tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~  345 (357)
T KOG0826|consen  296 LPPDREVCPVCLKKRQNP--TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA  345 (357)
T ss_pred             CCCccccChhHHhccCCC--ceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence            344567899999998877  23335799999999999999999999976654

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.30  E-value=0.0029  Score=69.43  Aligned_cols=50  Identities=26%  Similarity=0.545  Sum_probs=43.6

Q ss_pred             CCCcccccccccCCC-CceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          646 DEEPCCICQEEYTDG-DNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       646 ~~e~C~ICLEefe~g-e~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      ....|.||.+.|+.. +.+..+-|||.+|.+||.+||..+..||.|++++.
T Consensus       195 lv~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~  245 (465)
T KOG0827|consen  195 LVGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELP  245 (465)
T ss_pred             HHhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhh
Confidence            346799999999876 56777889999999999999999999999998763

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=94.07  E-value=0.031  Score=44.48  Aligned_cols=40  Identities=30%  Similarity=0.798  Sum_probs=27.4

Q ss_pred             ccccccccCCCCceEEeCCC--C---hhcHHHHHHHHhc--CCCCcCC
Q 005412          650 CCICQEEYTDGDNLGILDCG--H---DFHTNCIKQWLMQ--KNLCPIC  690 (697)
Q Consensus       650 C~ICLEefe~ge~V~~LpCG--H---~FH~~CI~qWL~q--knsCPIC  690 (697)
                      |-||++.....+ ..+.||.  =   ..|..|+.+|+..  +..|++|
T Consensus         1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            789999977765 2344655  3   6799999999984  4669998

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=93.67  E-value=0.03  Score=46.30  Aligned_cols=46  Identities=37%  Similarity=0.673  Sum_probs=35.6

Q ss_pred             CCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcCC
Q 005412          646 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP  696 (697)
Q Consensus       646 ~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LLp  696 (697)
                      ....|..|...-..+   .+++|||+.|..|..-  ++-+-||+|-+++..
T Consensus         6 ~~~~~~~~~~~~~~~---~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~   51 (55)
T PF14447_consen    6 PEQPCVFCGFVGTKG---TVLPCGHLICDNCFPG--ERYNGCPFCGTPFEF   51 (55)
T ss_pred             cceeEEEcccccccc---ccccccceeeccccCh--hhccCCCCCCCcccC
Confidence            456688887775555   7889999999999654  366789999887643

>PHA02862 5L protein; Provisional

Probab=93.66  E-value=0.058  Score=52.60  Aligned_cols=48  Identities=27%  Similarity=0.676  Sum_probs=31.6

Q ss_pred             CCcccccccccCCCCce-EEeCCCChhcHHHHHHHHh--cCCCCcCCCCCc
Q 005412          647 EEPCCICQEEYTDGDNL-GILDCGHDFHTNCIKQWLM--QKNLCPICKTTG  694 (697)
Q Consensus       647 ~e~C~ICLEefe~ge~V-~~LpCGH~FH~~CI~qWL~--qknsCPICRk~L  694 (697)
                      .+.|-||+++-++.... .+.---..-|.+|+.+|+.  ++..|++||.+.
T Consensus         2 ~diCWIC~~~~~e~~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY   52 (156)
T PHA02862          2 SDICWICNDVCDERNNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY   52 (156)
T ss_pred             CCEEEEecCcCCCCcccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence            35799999985433000 0000024689999999998  456799999864

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=93.38  E-value=0.032  Score=60.06  Aligned_cols=44  Identities=20%  Similarity=0.488  Sum_probs=31.1

Q ss_pred             CcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          648 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       648 e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      -.|.-|--.+..-  -+.++|+|+||.+|.+.  ...+.||.|-..+.
T Consensus        91 HfCd~Cd~PI~IY--GRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vq  134 (389)
T KOG2932|consen   91 HFCDRCDFPIAIY--GRMIPCKHVFCLECARS--DSDKICPLCDDRVQ  134 (389)
T ss_pred             EeecccCCcceee--ecccccchhhhhhhhhc--CccccCcCcccHHH
Confidence            4566676555443  14559999999999765  34678999987653

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=93.32  E-value=0.066  Score=63.93  Aligned_cols=48  Identities=33%  Similarity=0.791  Sum_probs=36.3

Q ss_pred             CCCCcccccccccCCCCce-EEeCCCChhcHHHHHHHHhcC--C-----CCcCCCC
Q 005412          645 SDEEPCCICQEEYTDGDNL-GILDCGHDFHTNCIKQWLMQK--N-----LCPICKT  692 (697)
Q Consensus       645 ~~~e~C~ICLEefe~ge~V-~~LpCGH~FH~~CI~qWL~qk--n-----sCPICRk  692 (697)
                      ...++|.||++.+.....+ ..-.|-|+||..||++|-+..  .     .||.|..
T Consensus       189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs  244 (950)
T KOG1952|consen  189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS  244 (950)
T ss_pred             cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence            3456799999999876543 233588999999999998731  1     3999984

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.21  E-value=0.059  Score=54.15  Aligned_cols=49  Identities=31%  Similarity=0.725  Sum_probs=35.0

Q ss_pred             CCCcccccccccCCCCce----EEeCCCChhcHHHHHHHHhc------C-----CCCcCCCCCc
Q 005412          646 DEEPCCICQEEYTDGDNL----GILDCGHDFHTNCIKQWLMQ------K-----NLCPICKTTG  694 (697)
Q Consensus       646 ~~e~C~ICLEefe~ge~V----~~LpCGH~FH~~CI~qWL~q------k-----nsCPICRk~L  694 (697)
                      ..-.|.||+..--++...    --..||.-||.-|+..||+.      .     ..||.|-+++
T Consensus       164 ~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pi  227 (234)
T KOG3268|consen  164 ELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPI  227 (234)
T ss_pred             hhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcc
Confidence            345688888765554322    22379999999999999982      1     2499999876

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=92.99  E-value=0.04  Score=65.36  Aligned_cols=43  Identities=37%  Similarity=0.864  Sum_probs=35.1

Q ss_pred             CcccccccccCCCCceEEeCCCChhcHHHHHHHHhcC--CCCcCCCCCc
Q 005412          648 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK--NLCPICKTTG  694 (697)
Q Consensus       648 e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qk--nsCPICRk~L  694 (697)
                      ..|.||++ .   +......|+|.||..|+.+-+...  ..||+||..+
T Consensus       455 ~~c~ic~~-~---~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l  499 (674)
T KOG1001|consen  455 HWCHICCD-L---DSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVL  499 (674)
T ss_pred             cccccccc-c---ccceeecccchHHHHHHHhccccccCCCCcHHHHHH
Confidence            78999999 3   345788999999999999988853  3599999743

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=92.53  E-value=0.038  Score=68.38  Aligned_cols=44  Identities=39%  Similarity=0.899  Sum_probs=39.1

Q ss_pred             CCCcccccccccC-CCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCC
Q 005412          646 DEEPCCICQEEYT-DGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT  692 (697)
Q Consensus       646 ~~e~C~ICLEefe-~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk  692 (697)
                      ....|.||++.+. .+   .+..|||.||..|+..|+..+..||+|+.
T Consensus      1152 ~~~~c~ic~dil~~~~---~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQG---GIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred             cccchHHHHHHHHhcC---CeeeechhHhhhHHHHHHHHhccCcchhh
Confidence            4457999999998 45   67789999999999999999999999984

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=91.69  E-value=0.12  Score=56.24  Aligned_cols=50  Identities=22%  Similarity=0.485  Sum_probs=35.4

Q ss_pred             CCCCCcccccccccCCCCc-eEEeCCCChhcHHHHHHHHh-cCCCCcCCCCC
Q 005412          644 PSDEEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQWLM-QKNLCPICKTT  693 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~ge~-V~~LpCGH~FH~~CI~qWL~-qknsCPICRk~  693 (697)
                      .++++-|++|+|++...++ ..-.+||-..|.-|...--+ -...||.||+.
T Consensus        11 edeed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~   62 (480)
T COG5175          11 EDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRK   62 (480)
T ss_pred             ccccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhh
Confidence            3445559999999987664 34448998888777554322 35679999974

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=91.33  E-value=0.45  Score=52.75  Aligned_cols=27  Identities=26%  Similarity=0.811  Sum_probs=21.0

Q ss_pred             CCChhcHHHHHHHHhc-------------CCCCcCCCCCc
Q 005412          668 CGHDFHTNCIKQWLMQ-------------KNLCPICKTTG  694 (697)
Q Consensus       668 CGH~FH~~CI~qWL~q-------------knsCPICRk~L  694 (697)
                      |.-.+|.+|+-+|+..             +-.||+||++.
T Consensus       311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F  350 (358)
T PF10272_consen  311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF  350 (358)
T ss_pred             ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence            5567899999999862             33599999864

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=91.07  E-value=0.12  Score=55.39  Aligned_cols=44  Identities=34%  Similarity=0.833  Sum_probs=37.9

Q ss_pred             cccccccccCCCC-ceEEeCCCChhcHHHHHHHHhcCCCCcCCCC
Q 005412          649 PCCICQEEYTDGD-NLGILDCGHDFHTNCIKQWLMQKNLCPICKT  692 (697)
Q Consensus       649 ~C~ICLEefe~ge-~V~~LpCGH~FH~~CI~qWL~qknsCPICRk  692 (697)
                      -|+||.+.+.... .+..++|||..|..|........-.||+|.+
T Consensus       160 ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~  204 (276)
T KOG1940|consen  160 NCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK  204 (276)
T ss_pred             CCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence            3999999988765 4567799999999999998887788999988

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=90.60  E-value=0.14  Score=55.28  Aligned_cols=45  Identities=27%  Similarity=0.535  Sum_probs=36.6

Q ss_pred             CCCCCcccccccccCCCCceEEeCC--CChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          644 PSDEEPCCICQEEYTDGDNLGILDC--GHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~ge~V~~LpC--GH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      ..+..+|+||.+.+..+    ++.|  ||+-|..|-.   +..+.||.||.++.
T Consensus        45 ~~~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g   91 (299)
T KOG3002|consen   45 DLDLLDCPVCFNPLSPP----IFQCDNGHLACSSCRT---KVSNKCPTCRLPIG   91 (299)
T ss_pred             chhhccCchhhccCccc----ceecCCCcEehhhhhh---hhcccCCccccccc
Confidence            44567899999999987    6777  6999999965   45788999998764

>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]

Probab=89.85  E-value=0.37  Score=56.28  Aligned_cols=44  Identities=23%  Similarity=0.645  Sum_probs=29.8

Q ss_pred             CCCCcccccccc-----cCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCC
Q 005412          645 SDEEPCCICQEE-----YTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK  691 (697)
Q Consensus       645 ~~~e~C~ICLEe-----fe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICR  691 (697)
                      .....|.||...     |+.....++..|+++||++|++.   .+..||.|-
T Consensus       509 ~~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~  557 (580)
T KOG1829|consen  509 GKGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRCE  557 (580)
T ss_pred             cCeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCchH
Confidence            445778888442     32333356668999999999554   455599993

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=89.48  E-value=0.14  Score=40.12  Aligned_cols=41  Identities=32%  Similarity=0.831  Sum_probs=23.7

Q ss_pred             ccccccccCCCCceEEeCCCChhcHHHHHHHHhcCC--CCcCC
Q 005412          650 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN--LCPIC  690 (697)
Q Consensus       650 C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qkn--sCPIC  690 (697)
                      |.+|.+....+..-....|+=.+|..|+..+++...  .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            778888888772211224999999999999999655  69998

; PDB: 3NW0_A 2CT0_A.

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=89.17  E-value=0.5  Score=45.67  Aligned_cols=48  Identities=27%  Similarity=0.603  Sum_probs=39.2

Q ss_pred             CCCcccccccccCCCCceEEe---C-CCChhcHHHHHHHHhc---CCCCcCCCCCcCC
Q 005412          646 DEEPCCICQEEYTDGDNLGIL---D-CGHDFHTNCIKQWLMQ---KNLCPICKTTGLP  696 (697)
Q Consensus       646 ~~e~C~ICLEefe~ge~V~~L---p-CGH~FH~~CI~qWL~q---knsCPICRk~LLp  696 (697)
                      ...+|.||.|.-.+.   +.|   . ||-..|..|.-..|+.   ...||+||+....
T Consensus        79 ~lYeCnIC~etS~ee---~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs  133 (140)
T PF05290_consen   79 KLYECNICKETSAEE---RFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS  133 (140)
T ss_pred             CceeccCcccccchh---hcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence            668899999998877   455   2 9999999999888874   5679999987653

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.65  E-value=0.14  Score=41.35  Aligned_cols=32  Identities=31%  Similarity=0.771  Sum_probs=24.0

Q ss_pred             EEeCCC-ChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          664 GILDCG-HDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       664 ~~LpCG-H~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      ....|. |..|..|+...|.....||+|++++.
T Consensus        14 ~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LP   46 (50)
T PF03854_consen   14 GLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLP   46 (50)
T ss_dssp             SEEE-SS-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred             CeeeecchhHHHHHHHHHhccccCCCcccCcCc
Confidence            355676 99999999999999999999998764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=87.69  E-value=0.28  Score=51.52  Aligned_cols=47  Identities=21%  Similarity=0.630  Sum_probs=36.6

Q ss_pred             CCCcccccccccCCCCceEEe--C-CCChhcHHHHHHHHhcC-CCCc--CCCC
Q 005412          646 DEEPCCICQEEYTDGDNLGIL--D-CGHDFHTNCIKQWLMQK-NLCP--ICKT  692 (697)
Q Consensus       646 ~~e~C~ICLEefe~ge~V~~L--p-CGH~FH~~CI~qWL~qk-nsCP--ICRk  692 (697)
                      .+..|+||..+.-..-.+..|  | |-|..|..|++.-|... ..||  -|.+
T Consensus         9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k   61 (314)
T COG5220           9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK   61 (314)
T ss_pred             hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence            456899999887655555555  5 99999999999999865 4699  6643

>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=87.59  E-value=0.37  Score=50.75  Aligned_cols=49  Identities=31%  Similarity=0.679  Sum_probs=36.0

Q ss_pred             CCCcccccccccCCCCc-eEEeCCC-----ChhcHHHHHHHHh--cCCCCcCCCCCc
Q 005412          646 DEEPCCICQEEYTDGDN-LGILDCG-----HDFHTNCIKQWLM--QKNLCPICKTTG  694 (697)
Q Consensus       646 ~~e~C~ICLEefe~ge~-V~~LpCG-----H~FH~~CI~qWL~--qknsCPICRk~L  694 (697)
                      ....|-||+++...... ....+|.     +..|..|+..|+.  .+..|-+|....
T Consensus        77 ~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~  133 (323)
T KOG1609|consen   77 SGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFF  133 (323)
T ss_pred             CCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccc
Confidence            35789999998765422 2344655     5689999999999  456799998754

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.81  E-value=0.29  Score=50.40  Aligned_cols=39  Identities=28%  Similarity=0.688  Sum_probs=29.4

Q ss_pred             ccccccccCCCCceEEeCCCCh-hcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          650 CCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       650 C~ICLEefe~ge~V~~LpCGH~-FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      |.+|-+.   +-.|..+||.|. +|..|=..    ...||+|+....
T Consensus       161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~  200 (207)
T KOG1100|consen  161 CRKCGER---EATVLLLPCRHLCLCGICDES----LRICPICRSPKT  200 (207)
T ss_pred             ceecCcC---CceEEeecccceEeccccccc----CccCCCCcChhh
Confidence            8888775   334677799998 99999554    456999997643

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=85.95  E-value=0.21  Score=59.08  Aligned_cols=44  Identities=30%  Similarity=0.707  Sum_probs=37.6

Q ss_pred             CCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCC---CCcCCCCC
Q 005412          647 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN---LCPICKTT  693 (697)
Q Consensus       647 ~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qkn---sCPICRk~  693 (697)
                      ..+|+||+..|..+   ..+.|-|.||..|+..-|..++   .||+|+..
T Consensus        21 ~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~   67 (684)
T KOG4362|consen   21 ILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSD   67 (684)
T ss_pred             hccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhh
Confidence            35699999999988   7889999999999988877654   59999954

>KOG3053 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.26  E-value=0.44  Score=50.49  Aligned_cols=53  Identities=26%  Similarity=0.559  Sum_probs=37.1

Q ss_pred             CCCCCCCcccccccccCCCCceEE-eCCC-----ChhcHHHHHHHHhcCC--------CCcCCCCCc
Q 005412          642 EIPSDEEPCCICQEEYTDGDNLGI-LDCG-----HDFHTNCIKQWLMQKN--------LCPICKTTG  694 (697)
Q Consensus       642 ~~~~~~e~C~ICLEefe~ge~V~~-LpCG-----H~FH~~CI~qWL~qkn--------sCPICRk~L  694 (697)
                      +..+.+..|-||+..=++.-.... -||.     |..|..||..|+-.|.        .||-|+++-
T Consensus        15 ~~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY   81 (293)
T KOG3053|consen   15 DNQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY   81 (293)
T ss_pred             CccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence            344566779999998655422111 1554     8899999999997544        499999864

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=85.21  E-value=0.45  Score=56.56  Aligned_cols=27  Identities=33%  Similarity=0.749  Sum_probs=24.3

Q ss_pred             eEEeCCCChhcHHHHHHHHhcCCCCcC
Q 005412          663 LGILDCGHDFHTNCIKQWLMQKNLCPI  689 (697)
Q Consensus       663 V~~LpCGH~FH~~CI~qWL~qknsCPI  689 (697)
                      ..+..|+|..|..|.+.|++....||.
T Consensus      1043 ~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1043 NFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred             hhhccccccccHHHHHHHHhcCCcCCC
Confidence            456789999999999999999999985

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.11  E-value=0.35  Score=53.96  Aligned_cols=40  Identities=38%  Similarity=0.772  Sum_probs=29.9

Q ss_pred             CCCCcccccccccCCC-CceEEeCCCChhcHHHHHHHHhcC
Q 005412          645 SDEEPCCICQEEYTDG-DNLGILDCGHDFHTNCIKQWLMQK  684 (697)
Q Consensus       645 ~~~e~C~ICLEefe~g-e~V~~LpCGH~FH~~CI~qWL~qk  684 (697)
                      ...+.|.||+.++... +....+.|+|.||.+|+++.++.+
T Consensus       144 ~~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~  184 (384)
T KOG1812|consen  144 LPKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK  184 (384)
T ss_pred             cccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh
Confidence            3467899999554444 333456899999999999998844

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=82.77  E-value=1.1  Score=53.86  Aligned_cols=50  Identities=28%  Similarity=0.675  Sum_probs=36.9

Q ss_pred             CCCCCcccccccccCCCCceEEeCCC-----ChhcHHHHHHHHhc--CCCCcCCCCCc
Q 005412          644 PSDEEPCCICQEEYTDGDNLGILDCG-----HDFHTNCIKQWLMQ--KNLCPICKTTG  694 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~ge~V~~LpCG-----H~FH~~CI~qWL~q--knsCPICRk~L  694 (697)
                      .+++..|.||..+=..++.+ .-||+     -..|.+|+..|+..  +..|-+|+.+.
T Consensus         9 N~d~~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~   65 (1175)
T COG5183           9 NEDKRSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEY   65 (1175)
T ss_pred             CccchhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCCCcceeeeccee
Confidence            44568899999886655432 23666     35899999999994  45699998764

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=82.30  E-value=1.5  Score=36.41  Aligned_cols=43  Identities=28%  Similarity=0.826  Sum_probs=31.7

Q ss_pred             CCCcccccccccCCCCceEEe-CCCChhcHHHHHHHHhcCCCCcC--CCC
Q 005412          646 DEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPI--CKT  692 (697)
Q Consensus       646 ~~e~C~ICLEefe~ge~V~~L-pCGH~FH~~CI~qWL~qknsCPI--CRk  692 (697)
                      ....|.+|-+.|.+++++++- .||-.||++|...    ...|-+  |..
T Consensus         4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~   49 (54)
T PF14446_consen    4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGT   49 (54)
T ss_pred             cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCC
Confidence            456799999999876666665 5999999999543    445554  544

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=82.19  E-value=0.79  Score=54.78  Aligned_cols=48  Identities=17%  Similarity=0.242  Sum_probs=33.5

Q ss_pred             CCcccccccccCCCC-ceEEeC---CCChhcHHHHHHHHhc------CCCCcCCCCCc
Q 005412          647 EEPCCICQEEYTDGD-NLGILD---CGHDFHTNCIKQWLMQ------KNLCPICKTTG  694 (697)
Q Consensus       647 ~e~C~ICLEefe~ge-~V~~Lp---CGH~FH~~CI~qWL~q------knsCPICRk~L  694 (697)
                      ...|.||.-++..++ ....++   |+|.||..||..|+.+      +-.|+.|+..+
T Consensus        96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci  153 (1134)
T KOG0825|consen   96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV  153 (1134)
T ss_pred             ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence            355777766666532 233444   9999999999999862      44589998754

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=81.43  E-value=1  Score=50.24  Aligned_cols=48  Identities=21%  Similarity=0.407  Sum_probs=39.5

Q ss_pred             CCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcC---CCCcCCCCCc
Q 005412          647 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK---NLCPICKTTG  694 (697)
Q Consensus       647 ~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qk---nsCPICRk~L  694 (697)
                      ...|+|=.+.-.+.+.-..|.|||+.+++-|.+..+..   ..||.|=...
T Consensus       334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~  384 (394)
T KOG2817|consen  334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ  384 (394)
T ss_pred             eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence            35799988888888888999999999999999987743   4699995543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	697
2ep4_A	74	Solution Structure Of Ring Finger From Human Ring F		2e-06
2l0b_A	91	Solution Nmr Structure Of Zinc Finger Domain Of E3		9e-06
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		2e-05
2ect_A	78	Solution Structure Of The Zinc Finger, C3hc4 Type (		3e-05
1x4j_A	75	Solution Structure Of Ring Finger In Ring Finger Pr		8e-05
2kiz_A	69	Solution Structure Of Arkadia Ring-H2 Finger Domain		9e-05
4ayc_A	138	Rnf8 Ring Domain Structure Length = 138		7e-04
4ayc_B	138	Rnf8 Ring Domain Structure Length = 138		8e-04
4epo_C	149	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		9e-04

>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger Protein 24 Length = 74

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 648 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPIC 690
           E C +C E++   D LGI  C H FH  C+ +WL  + +CP+C
Sbjct: 16  ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLC 58

>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3 Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr4710b Length = 91

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 647 EEPCC-ICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 691
           +E CC IC  EY  GD    L C H FH  C+  WL +   CP+C+
Sbjct: 39  QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCR 84

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 646 DEEPCCICQEEYTDGDNLGILD-CGHDFHTNCIKQWLMQKNLCPICKTT 693
           D   C +C  E  DG+    L  CGH FH  C+  WL   + CP+C+ T
Sbjct: 4   DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLT 52

>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 650 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTT 693
           C +C+E+Y  G+++  L C H FH +CI  WL Q + CP+C+ +
Sbjct: 18  CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKS 61

>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38 Length = 75

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 645 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLPT 697
           S++  C +C  ++     L +L C H+FH  C+ +WL     CPIC+    P+
Sbjct: 21  SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73

>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain Length = 69

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 650 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 691
           C IC     +G+++  L C H FH  C+ QWL+    CPIC+
Sbjct: 17  CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICR 58

>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure Length = 138

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 642 EIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 691
           ++  +E  C IC E + +   L   +C H F + CI +W+ +K  CPIC+
Sbjct: 48  DVLENELQCIICSEYFIEAVTL---NCAHSFCSYCINEWMKRKIECPICR 94

>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure Length = 138

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 642 EIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 691
           ++  +E  C IC E + +   L   +C H F + CI +W+ +K  CPIC+
Sbjct: 48  DVLENELQCIICSEYFIEAVTL---NCAHSFCSYCINEWMKRKIECPICR 94

>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 149

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 642 EIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 691
           ++  +E  C IC E + +   L   +C H F + CI +W+ +K  CPIC+
Sbjct: 59  DVLENELQCIICSEYFIEAVTL---NCAHSFCSYCINEWMKRKIECPICR 105

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	697
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	5e-20
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	1e-17
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	7e-17
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	2e-16
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	3e-15
2ect_A	78	Ring finger protein 126; metal binding protein, st	8e-15
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	1e-14
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	1e-14
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	1e-14
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	2e-14
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	7e-14
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	1e-13
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	1e-12
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	7e-11
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	3e-10
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	7e-06
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	3e-10
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	5e-10
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	6e-10
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	8e-10
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	9e-10
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	2e-09
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	2e-09
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	5e-09
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	6e-09
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	3e-08
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	6e-08
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	4e-07
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	9e-07
3nw0_A	238	Non-structural maintenance of chromosomes element	1e-06
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	2e-06
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	3e-06
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	3e-06
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	6e-06
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	1e-05
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	1e-05
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	3e-05
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	3e-05
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	4e-05
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	6e-05
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	1e-04
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	1e-04
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	1e-04
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	2e-04
2vnf_A	60	ING 4, P29ING4, inhibitor of growth protein 4; ace	2e-04
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	2e-04
1z6u_A	150	NP95-like ring finger protein isoform B; structura	3e-04
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	4e-04
2g6q_A	62	Inhibitor of growth protein 2; protein-peptide com	5e-04
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	5e-04
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	6e-04
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	7e-04
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	8e-04
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	8e-04
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	9e-04

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 83.7 bits (207), Expect = 5e-20
 Identities = 19/58 (32%), Positives = 31/58 (53%)

Query: 640 EIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLPT 697
           +++  +  E C +C E++   D LGI  C H FH  C+ +WL  + +CP+C    L  
Sbjct: 8   KVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 76.6 bits (189), Expect = 1e-17
 Identities = 20/53 (37%), Positives = 27/53 (50%)

Query: 640 EIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT 692
           E      EE C IC     +G+++  L C H FH  C+ QWL+    CPIC+ 
Sbjct: 7   EGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRV 59

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 74.4 bits (183), Expect = 7e-17
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT 692
           + +  E C IC E+ ++      L C H F   CI +W+ Q   CP+CK 
Sbjct: 1   MATVAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKV 48

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 73.5 bits (181), Expect = 2e-16
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLPT 697
            S++  C +C  ++     L +L C H+FH  C+ +WL     CPIC+    P+
Sbjct: 20  QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 70.8 bits (174), Expect = 3e-15
 Identities = 19/53 (35%), Positives = 24/53 (45%)

Query: 640 EIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT 692
           +      E  C IC  EY  GD    L C H FH  C+  WL +   CP+C+ 
Sbjct: 33  DHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRC 85

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 69.0 bits (169), Expect = 8e-15
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 642 EIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 691
           E       C +C+E+Y  G+++  L C H FH +CI  WL Q + CP+C+
Sbjct: 10  EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCR 59

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 67.7 bits (166), Expect = 1e-14
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 644 PSDEEPCCICQEEYTDGDNL-GILDCGHDFHTNCIKQWLMQKNLCPICK 691
            S    C IC E+      +  +L CGH  H  C ++ L +   CP+C 
Sbjct: 2   SSGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCS 50

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 68.2 bits (167), Expect = 1e-14
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 640 EIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 691
            ++  +DEE CCIC +   D     IL C H F   CI +W  +   CPIC+
Sbjct: 8   RVKQLTDEEECCICMDGRADL----ILPCAHSFCQKCIDKWSDRHRNCPICR 55

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 68.0 bits (166), Expect = 1e-14
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 644 PSDEEPCCICQEEYTD----GDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT 692
           PS    C IC + Y++    G  +   +CGH F + C++  L   N CP C+ 
Sbjct: 12  PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRK 64

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 67.6 bits (165), Expect = 2e-14
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 644 PSDEEPCCICQEEYTD----GDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT 692
           PS    C IC + Y++    G  +   +CGH F + C++  L   N CP C+ 
Sbjct: 7   PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRK 59

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 65.9 bits (161), Expect = 7e-14
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 650 CCICQEEYTD----GDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT 692
           C IC + Y++    G  +   +CGH F + C++  L   N CP C+ 
Sbjct: 6   CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRK 52

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 65.7 bits (160), Expect = 1e-13
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 647 EEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPIC 690
            + C  CQ E    D + +  +C H FH  C+  W+ Q N CP+C
Sbjct: 26  MDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLC 70

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 61.8 bits (151), Expect = 1e-12
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 650 CCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKT 692
           C +C  E  DG+    L  CGH FH  C+  WL   + CP+C+ 
Sbjct: 8   CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRL 51

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 60.1 bits (145), Expect = 7e-11
 Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 12/107 (11%)

Query: 587 AEMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLNEETIMKIMKQKRYPSLEIEIPSD 646
           A M + +R  + D + +   +   LE+          EE      +++   S   ++  +
Sbjct: 13  ALMEELNRSKK-DFEAIIQAKNKELEQ--------TKEEKEKMQAQKEEVLSHMNDVLEN 63

Query: 647 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTT 693
           E  C IC E + +      L+C H F + CI +W+ +K  CPIC+  
Sbjct: 64  ELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKD 107

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 57.5 bits (138), Expect = 3e-10
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 644 PSDEEPCCICQEEYTDGDNLG----ILDCGHDFHTNCIKQWLMQKNLCPICK 691
            S    C IC + Y++    G      +CGH F + C++  L   N CP C+
Sbjct: 4   GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 55

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 45.2 bits (106), Expect = 7e-06
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 650 CCICQEEYTD----GDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT 692
           C IC + Y++    G  +   +CGH F + C++  L   N CP C+ 
Sbjct: 75  CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRK 121

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 56.0 bits (135), Expect = 3e-10
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 7/52 (13%)

Query: 645 SDEEP----CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT 692
           S+EE     C IC++ + +     +  C H F  +C  +       C IC  
Sbjct: 9   SEEEEIPFRCFICRQAFQNPV---VTKCRHYFCESCALEHFRATPRCYICDQ 57

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 56.4 bits (135), Expect = 5e-10
 Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 16/90 (17%)

Query: 617 DVSTGLNEETIMKIMKQKRYPSLEIEI-PSDEEPCCICQEEYT---------------DG 660
           D  +G N     K  + K++ ++ +       + C IC+                   + 
Sbjct: 6   DTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEE 65

Query: 661 DNLGILDCGHDFHTNCIKQWLMQKNLCPIC 690
             +    C H FH +CI +WL  + +CP+ 
Sbjct: 66  CTVAWGVCNHAFHFHCISRWLKTRQVCPLD 95

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 54.8 bits (132), Expect = 6e-10
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 2/55 (3%)

Query: 638 SLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT 692
           S  +   +    C IC+    D     I +C H F  +CI +     N CP C  
Sbjct: 6   SGNLSELTPYILCSICKGYLID--ATTITECLHTFCKSCIVRHFYYSNRCPKCNI 58

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 54.5 bits (131), Expect = 8e-10
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 4/51 (7%)

Query: 644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM--QKNLCPICKT 692
           P   + C IC      G +     CG   H  C+ ++     +  CP C  
Sbjct: 12  PDAVKICNICHSLLIQGQSC--ETCGIRMHLPCVAKYFQSNAEPRCPHCND 60

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 55.6 bits (134), Expect = 9e-10
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 631 MKQKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPIC 690
           M +     +  E+      C +C   + D     I++C H F   CI ++L     CPIC
Sbjct: 1   MHRTTRIKIT-ELNPHLM-CVLCGGYFID--ATTIIECLHSFCKTCIVRYLETSKYCPIC 56

Query: 691 KT 692
             
Sbjct: 57  DV 58

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 59.0 bits (142), Expect = 2e-09
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 4/77 (5%)

Query: 617 DVSTGLNEETIMKIMKQKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNC 676
           D++          I   +    L  E+ S  + C IC E   D     I  CGH   T+C
Sbjct: 302 DLTGLCEPTPQDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVK---IEPCGHLMCTSC 358

Query: 677 IKQWLM-QKNLCPICKT 692
           +  W   +   CP C+ 
Sbjct: 359 LTSWQESEGQGCPFCRC 375

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 53.3 bits (128), Expect = 2e-09
 Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 3/48 (6%)

Query: 645 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT 692
                C IC +          L C H F   C+K        C +C+ 
Sbjct: 13  LTVPECAICLQTCVHPV---SLPCKHVFCYLCVKGASWLGKRCALCRQ 57

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 53.7 bits (128), Expect = 5e-09
 Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 26/117 (22%)

Query: 589 MHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLNEETIMKIMKQKRYPSLEIEIPSDEE 648
           MH  H  +  D +N+ ++         G  +     +   ++ K         +I  D  
Sbjct: 1   MHHHHHHV--DEENLYFQGG-------GRGTNSGAGKKRFEVKKWNAVALWAWDIVVDN- 50

Query: 649 PCCICQEEY---------------TDGDNLGILDCGHDFHTNCIKQWLMQKNLCPIC 690
            C IC+                  ++   +    C H FH +CI +WL  + +CP+ 
Sbjct: 51  -CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 106

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 53.0 bits (127), Expect = 6e-09
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 645 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-QKNLCPICKTT 693
           ++   C IC E+  D        C      +CI++WL  Q+  CP C+  
Sbjct: 20  AEVFRCFICMEKLRD--ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAP 67

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 51.4 bits (122), Expect = 3e-08
 Identities = 22/95 (23%), Positives = 30/95 (31%), Gaps = 28/95 (29%)

Query: 619 STGLNEETIMKIMKQKRYPSLEIEIPSDEEPCCICQEEYTDGDNLG-------------- 664
           S+G  E+ I K  ++ +           EE C IC E+                      
Sbjct: 5   SSGEPEQVIRKYTEELKVAP--------EEDCIICMEKLAVASGYSDMTDSKALGPMVVG 56

Query: 665 -ILDCGHDFHTNCIKQWLMQKN-----LCPICKTT 693
            +  C H FH  C+       N      CP CKT 
Sbjct: 57  RLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTI 91

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 50.1 bits (120), Expect = 6e-08
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 650 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTT 693
           C IC E +     + I  C H++ + CI+++L  K  CP C  T
Sbjct: 25  CGICFEYFNIA--MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVT 66

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 51.8 bits (123), Expect = 4e-07
 Identities = 16/84 (19%), Positives = 24/84 (28%), Gaps = 16/84 (19%)

Query: 625 ETIMKIMKQKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGI-----LDCGHDFHTNCIKQ 679
           +     M          E  ++E  C IC     DG  + +       C    H  C+++
Sbjct: 286 DLCYFPMPDWSDGPKLDEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEE 345

Query: 680 WLMQKN-----------LCPICKT 692
           W                 CP CK 
Sbjct: 346 WFKTLMDGKTFLEVSFGQCPFCKA 369

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 46.1 bits (109), Expect = 9e-07
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 8/59 (13%)

Query: 642 EIPSDEEPCCICQEEYTDGDNLGILDCG-----HDFHTNCIKQWLMQKN--LCPICKTT 693
             PS ++ C IC  E  D   L I  C      H  H  C++QW+   +   C +CK  
Sbjct: 10  ITPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYE 67

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 22/141 (15%), Positives = 42/141 (29%), Gaps = 15/141 (10%)

Query: 554 ISEIRQVLNAMRRGENLRVEDYMLFEPFIYHGLAEMHDRHRDMRLDVDNMSYEELLALEE 613
           +   R+ L  +   E        +          +M  +  +  L    +  + L+  E 
Sbjct: 98  LDLFRKALELIIDSETGFASSTNILNLVDQLKGKKMRKKEAEQVLQ-KFVQNKWLIEKEG 156

Query: 614 RIGDVSTGLNEETIMKIMKQKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFH 673
                   + E   M+   ++ YP          + C IC      G +     CG   H
Sbjct: 157 EFTLHGRAILE---MEQYIRETYPD-------AVKICNICHSLLIQGQS--CETCGIRMH 204

Query: 674 TNCIKQWLM--QKNLCPICKT 692
             C+ ++     +  CP C  
Sbjct: 205 LPCVAKYFQSNAEPRCPHCND 225

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 4/58 (6%)

Query: 637 PSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNL-CPICKTT 693
             L +    +   C  CQE            C H+   +C+ +    +   CP C+  
Sbjct: 42  FQLFLSKVEETFQCICCQELVFR---PITTVCQHNVCKDCLDRSFRAQVFSCPACRYD 96

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 94

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 650 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK 684
           C +C  EY       I  C   F T C+KQ++   
Sbjct: 8   CKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELL 42

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 11/72 (15%)

Query: 637 PSLEIEIPSDEEPCCICQEEYTDGDNL-GILDCGHDFHTNCIKQWLMQKN---LCPICKT 692
            S  ++   +   C IC E +T+      +L CGH     C+++ L        CP C  
Sbjct: 5   SSGNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSK 64

Query: 693 -------TGLPT 697
                  T L  
Sbjct: 65  ITRITSLTQLTD 76

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 Length = 60

 Score = 43.2 bits (102), Expect = 6e-06
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 11/57 (19%)

Query: 645 SDEEPCC-ICQEEYTDGDNLGILDCG-----HDFHTNCIKQWLM--QKNLCPICKTT 693
            ++ P C IC EE   G+      CG      + H +C+  WL   +   C IC   
Sbjct: 3   DEDVPVCWICNEE--LGNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVV 56

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 4/44 (9%)

Query: 650 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTT 693
           C  C     +   + +  C H F +NC+   +     CP+C T 
Sbjct: 25  CSRCTNILREP--VCLGGCEHIFCSNCVSDCI--GTGCPVCYTP 64

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 4/54 (7%)

Query: 641 IEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNL-CPICKTT 693
           ++   D+  C  C             +CGH F  +C+   L   +  C  C+ +
Sbjct: 9   VKTVEDKYKCEKCHLVLCSPK---QTECGHRFCESCMAALLSSSSPKCTACQES 59

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65

 Score = 41.5 bits (97), Expect = 3e-05
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 646 DEEPCCICQ-EEYTDGD-NLGILDCGHDFHTNCIKQWLMQK-NLCPICKTT 693
           D++ C  C+  +Y +    L +  CGH    +C+    ++    CP C T 
Sbjct: 2   DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTP 52

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 5/53 (9%)

Query: 643 IPSDEE-PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNL-CPICKTT 693
           IPS  E  C IC E   +      L C H     C +  + + +L CP C+  
Sbjct: 10  IPSLSECQCGICMEILVEPV---TLPCNHTLCKPCFQSTVEKASLCCPFCRRR 59

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 637 PSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN--LCPICKTTG 694
            S E +   DE  C IC++  TD   + I  CG+ +   CI+  L++ +   CP C    
Sbjct: 5   SSGEDDPIPDELLCLICKDIMTDA--VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 62

Query: 695 LP 696
           + 
Sbjct: 63  VS 64

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 6/43 (13%)

Query: 650 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT 692
           C  CQ E        +L C H   + C++   MQ   CPIC+ 
Sbjct: 9   CQQCQAEAKC---PKLLPCLHTLCSGCLEASGMQ---CPICQA 45

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 40.9 bits (95), Expect = 7e-05
 Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 2/49 (4%)

Query: 646 DEEPCCICQEEYTDGD-NLGILDCGHDFHTNCIKQWL-MQKNLCPICKT 692
           D   C +C E     D N     CG+     C  +    +  LCP C+ 
Sbjct: 10  DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRK 58

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 9e-05
 Identities = 34/219 (15%), Positives = 71/219 (32%), Gaps = 79/219 (36%)

Query: 512 SQIHHQTQRRS----SFLMER---QGDNVLGLPRSLQVLAADIEGRHRLISEIRQVLNAM 564
           S I  + ++ S     ++ +R     DN +    ++         R +   ++RQ L  +
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS--------RLQPYLKLRQALLEL 147

Query: 565 RRGENLRVEDYMLFEPFIYHG--------LAEMHDRHRDMRLDVDNMSYEELLALEERI- 615
           R  +N+ +            G        +A          LDV   SY+    ++ +I 
Sbjct: 148 RPAKNVLI-----------DGVLGSGKTWVA----------LDVCL-SYKVQCKMDFKIF 185

Query: 616 ----GDVSTGLNEETIMKIMKQKRY----------------PSLEIEIPSDEEPCCICQE 655
                + ++    ET+++++ QK                    L I     E    +  +
Sbjct: 186 WLNLKNCNS---PETVLEML-QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241

Query: 656 EYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTT 693
            Y +   L +L    +  +      + +    C I  TT
Sbjct: 242 PYENC--LLVLL---NVQNAKAWNAFNLS---CKILLTT 272

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 645 SDEEPCCICQEEYTDGDNLGILDCGHDFH-TNCIKQWLMQKNLCPIC 690
           +  +PC +C++   DG N+     GH     +C ++       CPIC
Sbjct: 5   NLLKPCSLCEKRPRDG-NIIHGRTGHLVTCFHCARRLKKAGASCPIC 50

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 645 SDEEPCCICQEEYTDGDNLGILDCGHDFH-TNCIKQWLMQKNLCPIC 690
           +  EPC ICQ    +G  +     GH      C K+   +   CP+C
Sbjct: 6   NAIEPCVICQGRPKNG-CIVHGKTGHLMACFTCAKKLKKRNKPCPVC 51

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 650 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNL--CPICKTTGLP 696
           C IC++  TD   + I  CG+ +   CI+  L++ +   CP C    + 
Sbjct: 16  CLICKDIMTDA--VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 62

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 11/75 (14%)

Query: 622 LNEETIMKIMKQKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWL 681
           ++   +     Q    +++         C IC E   +        C H F   C+ + L
Sbjct: 1   MDLSALRVEEVQNVINAMQ-----KILECPICLELIKE---PVSTKCDHIFCKFCMLKLL 52

Query: 682 MQKN---LCPICKTT 693
            QK     CP+CK  
Sbjct: 53  NQKKGPSQCPLCKND 67

>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Length = 60

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 16/63 (25%)

Query: 639 LEIEIPSDEEPCCICQEEYTDGDNLG--ILDCGHD-FHTNCIK-------QWLMQKNLCP 688
           +++ +  +E   C+C +    G+ +G    DC  + FH  C+        +W      CP
Sbjct: 1   MDMPVDPNEPTYCLCHQVS-YGEMIGCDNPDCSIEWFHFACVGLTTKPRGKW-----FCP 54

Query: 689 ICK 691
            C 
Sbjct: 55  RCS 57

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 7/63 (11%)

Query: 639 LEIEIPSDEEP---CCICQEEYTDGDNLGILDCGHDFHTNCIKQWL-MQKNLCPICKTTG 694
           L ++ P+       C IC+    D        C H F   CI + L +  + CP C+   
Sbjct: 12  LAVDFPAHFVKSISCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRYPC 68

Query: 695 LPT 697
            PT
Sbjct: 69  FPT 71

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 4/50 (8%)

Query: 645 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWL-MQKNLCPICKTT 693
                C  CQE           +C H+   +C+++    Q   CP C+  
Sbjct: 76  EQSFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHD 122

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 40.8 bits (95), Expect = 4e-04
 Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 4/51 (7%)

Query: 644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNL-CPICKTT 693
              +  C IC     +        CGH F   CI + +      CP+    
Sbjct: 15  LESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEI 62

>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Length = 62

 Score = 38.0 bits (88), Expect = 5e-04
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 14/61 (22%)

Query: 640 EIEIPSDEEPCCIC-QEEYTDGDNLGILDCGHD-FHTNCIK-------QWLMQKNLCPIC 690
           E  I  +E   C+C Q  Y +        C  + FH +C+        +W      CP C
Sbjct: 3   EFAIDPNEPTYCLCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKW-----YCPKC 57

Query: 691 K 691
           +
Sbjct: 58  R 58

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 646 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQ-WLMQKNL--CPICKTT 693
           +E  C IC +          +DCGH+F   CI Q          CP+CKT+
Sbjct: 19  EEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTS 66

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 40.0 bits (93), Expect = 6e-04
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 650 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNL-CPICKTTGLPT 697
           C IC +   +   +   +C H F  +CI   L   N  CP C+   +  
Sbjct: 57  CPICLDMLKNT--MTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 103

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58

 Score = 37.3 bits (87), Expect = 7e-04
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 646 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN---LCPIC 690
            E  C +C E   +     I++CGH+F   CI +W         CP+C
Sbjct: 14  VEASCSVCLEYLKE---PVIIECGHNFCKACITRWWEDLERDFPCPVC 58

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 9/54 (16%)

Query: 646 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQ-WLMQKNL-----CPICKTT 693
           +E  C IC E   +       DC H F   CI   +   +N      CP+C+  
Sbjct: 18  EEVTCPICLELLKE---PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVP 68

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 4/51 (7%)

Query: 644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNL-CPICKTT 693
              +  C IC     +        CGH F   CI + +      CP+    
Sbjct: 15  LESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEI 62

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79

 Score = 37.6 bits (88), Expect = 9e-04
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 10/51 (19%)

Query: 650 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNL-------CPICKTT 693
           C IC E  T+      LDCGH     CI     +          CP+C  +
Sbjct: 15  CPICLELLTE---PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGIS 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	697
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.51
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.42
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.41
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.41
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.4
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.38
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.32
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.3
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.27
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.27
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.26
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.22
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.21
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.21
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.2
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.19
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.18
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.18
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.17
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.14
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.14
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.14
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.13
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.11
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.11
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.1
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.08
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.07
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.07
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.06
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.06
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.05
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.02
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.02
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.02
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.01
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.0
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.95
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.94
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	98.94
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.92
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.91
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.91
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.89
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.88
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	98.86
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.86
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.85
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.83
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.82
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.77
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.77
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.73
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.72
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.72
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.71
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.69
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.66
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.62
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.59
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.58
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.45
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.44
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.43
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.37
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.36
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.3
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.3
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.28
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.2
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.64
3nw0_A	238	Non-structural maintenance of chromosomes element	97.39
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	93.84
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	93.62
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	92.53
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	87.78
1we9_A	64	PHD finger family protein; structural genomics, PH	84.46
4fo9_A	360	E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom	84.04
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	83.67
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	83.24
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	82.71
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	81.54
1wep_A	79	PHF8; structural genomics, PHD domain, riken struc	81.0

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.51  E-value=1.1e-14  Score=126.71  Aligned_cols=77  Identities=29%  Similarity=0.566  Sum_probs=61.6

Q ss_pred             CCCCCCHHHHHHHhhhccCCCcccCCCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcCC
Q 005412          618 VSTGLNEETIMKIMKQKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP  696 (697)
Q Consensus       618 vs~GlSeE~I~kllk~~ky~~~e~~~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LLp  696 (697)
                      ...+++++.|.++... ++ .........+..|+||+++|..++.++.|+|+|.||..||.+||+.+..||+||+.+.+
T Consensus        13 ~~~~~s~~~i~~lp~~-~~-~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           13 ANPPASKESIDALPEI-LV-TEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             CCCCCCHHHHHTSCEE-EC-CTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             CCCCCCHHHHHhCCCe-ee-cccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence            3467888888775543 33 22223345677899999999998889999999999999999999999999999998764

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=1.2e-13  Score=114.57  Aligned_cols=54  Identities=35%  Similarity=0.888  Sum_probs=48.8

Q ss_pred             CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcCC
Q 005412          643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP  696 (697)
Q Consensus       643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LLp  696 (697)
                      ....+..|+||+++|..++.+..|+|+|.||..||.+|++.+..||+||+.+..
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~   64 (74)
T 2ep4_A           11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ   64 (74)
T ss_dssp             CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred             cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence            345577899999999999889999999999999999999999999999998764

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=7.9e-14  Score=116.29  Aligned_cols=54  Identities=31%  Similarity=0.912  Sum_probs=49.1

Q ss_pred             CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcCC
Q 005412          643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP  696 (697)
Q Consensus       643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LLp  696 (697)
                      ...+...|+||+++|..++.++.|+|+|.||..||.+||+.+..||+||+.+.+
T Consensus        19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           19 HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP   72 (75)
T ss_dssp             CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred             ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence            345667899999999999889999999999999999999999999999998865

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.41  E-value=2.1e-13  Score=111.67  Aligned_cols=55  Identities=35%  Similarity=0.794  Sum_probs=48.8

Q ss_pred             CCCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcCC
Q 005412          642 EIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP  696 (697)
Q Consensus       642 ~~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LLp  696 (697)
                      ........|+||++.|..++.++.++|+|.||..||.+|++.+..||+||+.+..
T Consensus         9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   63 (69)
T 2kiz_A            9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA   63 (69)
T ss_dssp             CSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred             CcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence            3455667899999999988888999999999999999999999999999998753

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.40  E-value=1.3e-13  Score=107.98  Aligned_cols=51  Identities=37%  Similarity=0.987  Sum_probs=46.6

Q ss_pred             CCCCcccccccccCCCCceEEeC-CCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          645 SDEEPCCICQEEYTDGDNLGILD-CGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       645 ~~~e~C~ICLEefe~ge~V~~Lp-CGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      ++...|+||+++|..++.+..++ |+|.||..||.+|++.+..||+||+.+.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            45678999999999988888897 9999999999999999999999999874

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.38  E-value=2e-13  Score=114.30  Aligned_cols=54  Identities=33%  Similarity=0.815  Sum_probs=48.5

Q ss_pred             CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcCC
Q 005412          643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP  696 (697)
Q Consensus       643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LLp  696 (697)
                      .......|+||++.|..++.+..|+|+|.||..||.+|++.+..||+||+.+..
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   64 (78)
T 2ect_A           11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG   64 (78)
T ss_dssp             TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred             cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence            345667899999999998888899999999999999999999999999998753

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.32  E-value=1.6e-12  Score=116.28  Aligned_cols=50  Identities=32%  Similarity=0.567  Sum_probs=40.9

Q ss_pred             CCCcccccccccCCCC---------------ceEEeCCCChhcHHHHHHHHh-----cCCCCcCCCCCcC
Q 005412          646 DEEPCCICQEEYTDGD---------------NLGILDCGHDFHTNCIKQWLM-----QKNLCPICKTTGL  695 (697)
Q Consensus       646 ~~e~C~ICLEefe~ge---------------~V~~LpCGH~FH~~CI~qWL~-----qknsCPICRk~LL  695 (697)
                      .++.|+||+++|..+.               .+..++|+|.||..||.+||.     .+..||+||+.+.
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~   93 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG   93 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence            3568999999997653               344779999999999999994     5678999998763

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.30  E-value=1.5e-12  Score=101.76  Aligned_cols=51  Identities=29%  Similarity=0.666  Sum_probs=44.1

Q ss_pred             CCCCcccccccccCCCC-ceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          645 SDEEPCCICQEEYTDGD-NLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       645 ~~~e~C~ICLEefe~ge-~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      .....|+||+++|...+ .+..++|+|.||..||.+|++.+..||+||+.+.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            35678999999997643 4677899999999999999999999999999764

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=1.8e-12  Score=105.09  Aligned_cols=54  Identities=30%  Similarity=0.663  Sum_probs=46.0

Q ss_pred             CCCCCCcccccccccCCC----CceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcCC
Q 005412          643 IPSDEEPCCICQEEYTDG----DNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP  696 (697)
Q Consensus       643 ~~~~~e~C~ICLEefe~g----e~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LLp  696 (697)
                      ...+...|+||++.|.+.    +.++.++|||.||..||.+|++.+..||+||+.+..
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence            345678899999999864    345788999999999999999999999999998753

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=2.8e-12  Score=109.39  Aligned_cols=52  Identities=31%  Similarity=0.854  Sum_probs=42.3

Q ss_pred             CCCCCcccccccccCC-----------CCceEEe-CCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          644 PSDEEPCCICQEEYTD-----------GDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~-----------ge~V~~L-pCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      ..+++.|+||+++|..           ++.++.+ +|+|.||.+||++||+.+.+||+||+++.
T Consensus        12 ~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   75 (81)
T 2ecl_A           12 DVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV   75 (81)
T ss_dssp             SCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred             cCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence            3456778888888854           3445566 59999999999999999999999999864

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.26  E-value=1.8e-12  Score=106.10  Aligned_cols=53  Identities=30%  Similarity=0.691  Sum_probs=45.6

Q ss_pred             CCCCCcccccccccCCC----CceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcCC
Q 005412          644 PSDEEPCCICQEEYTDG----DNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP  696 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~g----e~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LLp  696 (697)
                      ..++..|+||++.|.+.    +.++.++|||.||..||.+|++.+..||+||+.+..
T Consensus         7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   63 (71)
T 3ng2_A            7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   63 (71)
T ss_dssp             CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred             CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence            34567899999999763    556788999999999999999999999999998753

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=3e-12  Score=105.79  Aligned_cols=50  Identities=22%  Similarity=0.395  Sum_probs=44.1

Q ss_pred             CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      ...+...|+||++.+.+.   +.++|||.||..||.+|+..+..||+||+.+.
T Consensus        11 ~~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (71)
T 2d8t_A           11 PSLTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIP   60 (71)
T ss_dssp             SSSSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred             cCCCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence            345567899999999776   78899999999999999999999999999864

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=8.9e-12  Score=103.20  Aligned_cols=51  Identities=25%  Similarity=0.530  Sum_probs=44.2

Q ss_pred             CCCCCCcccccccccCCCCceEEe-CCCChhcHHHHHHHHhcCCCCcCCCCCcCC
Q 005412          643 IPSDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGLP  696 (697)
Q Consensus       643 ~~~~~e~C~ICLEefe~ge~V~~L-pCGH~FH~~CI~qWL~qknsCPICRk~LLp  696 (697)
                      ...+...|+||++.|.+.   +.+ +|||.||..||.+|+..+..||+||+.+..
T Consensus        11 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   62 (72)
T 2djb_A           11 ELTPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ   62 (72)
T ss_dssp             CCCGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred             hcCCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence            345667899999999876   565 999999999999999999999999998753

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.21  E-value=8.5e-12  Score=112.54  Aligned_cols=51  Identities=27%  Similarity=0.642  Sum_probs=44.1

Q ss_pred             CCCCCcccccccccCCCC---------------ceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCc
Q 005412          644 PSDEEPCCICQEEYTDGD---------------NLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG  694 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~ge---------------~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~L  694 (697)
                      ...++.|+||++.|....               .++.++|+|.||..||.+||..+.+||+||+.+
T Consensus        34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~   99 (106)
T 3dpl_R           34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW   99 (106)
T ss_dssp             SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred             CCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence            456788999999998641               367789999999999999999999999999974

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.20  E-value=4.8e-12  Score=101.15  Aligned_cols=50  Identities=28%  Similarity=0.659  Sum_probs=43.8

Q ss_pred             CCCcccccccccCCC----CceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          646 DEEPCCICQEEYTDG----DNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       646 ~~e~C~ICLEefe~g----e~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      +...|+||++.|...    +.+..++|||.||..||.+|++.+..||+||+.+.
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   55 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN   55 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCT
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCC
Confidence            457899999999863    45678899999999999999999999999999875

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=1.7e-11  Score=104.02  Aligned_cols=54  Identities=26%  Similarity=0.633  Sum_probs=45.6

Q ss_pred             CCCCCCCcccccccccCCCCc-eEEeCCCChhcHHHHHHHHhcC---CCCcCCCCCcC
Q 005412          642 EIPSDEEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQWLMQK---NLCPICKTTGL  695 (697)
Q Consensus       642 ~~~~~~e~C~ICLEefe~ge~-V~~LpCGH~FH~~CI~qWL~qk---nsCPICRk~LL  695 (697)
                      +...+...|+||++.|.+.+. .+.++|||.||..||.+|++.+   ..||+||+.+.
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   67 (88)
T 2ct2_A           10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR   67 (88)
T ss_dssp             CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred             hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence            345566889999999998654 5788999999999999999976   78999999764

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=1.3e-11  Score=104.38  Aligned_cols=50  Identities=20%  Similarity=0.453  Sum_probs=43.8

Q ss_pred             CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      .......|+||++.|.++   +.++|||.||..||.+|+.....||+||+.+.
T Consensus        11 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           11 EEEIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCCCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             cCCCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            344567899999999776   67899999999999999999999999999863

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.18  E-value=1e-11  Score=101.13  Aligned_cols=48  Identities=35%  Similarity=0.699  Sum_probs=42.4

Q ss_pred             CCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          646 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       646 ~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      ....|+||++.+.++  ++.++|||.||..||.+|++.+..||+||+.+.
T Consensus         4 ~~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~   51 (68)
T 1chc_A            4 VAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence            457899999998753  577899999999999999999999999998764

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.17  E-value=1.6e-11  Score=102.53  Aligned_cols=50  Identities=30%  Similarity=0.769  Sum_probs=43.5

Q ss_pred             CCCCCCcccccccccCCCCceEEeC-CCChhcHHHHHHHHhcC--CCCcCCCCCcC
Q 005412          643 IPSDEEPCCICQEEYTDGDNLGILD-CGHDFHTNCIKQWLMQK--NLCPICKTTGL  695 (697)
Q Consensus       643 ~~~~~e~C~ICLEefe~ge~V~~Lp-CGH~FH~~CI~qWL~qk--nsCPICRk~LL  695 (697)
                      ...+...|+||++.|.++   +.++ |||.||..||.+|++.+  ..||+||+.++
T Consensus        11 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   63 (74)
T 2yur_A           11 PIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   63 (74)
T ss_dssp             CSCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred             cCCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence            345667899999999987   7798 99999999999999965  68999999764

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.14  E-value=6.8e-12  Score=102.91  Aligned_cols=50  Identities=40%  Similarity=0.900  Sum_probs=43.7

Q ss_pred             CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcCC
Q 005412          643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP  696 (697)
Q Consensus       643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LLp  696 (697)
                      ...+...|+||++.+.+    +.++|||.||..||.+|+..+..||+||+.+..
T Consensus        11 ~~~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   60 (70)
T 2ecn_A           11 QLTDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG   60 (70)
T ss_dssp             CCCCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred             cCCCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence            34556789999999876    788999999999999999999999999987753

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.14  E-value=2.9e-11  Score=99.58  Aligned_cols=51  Identities=33%  Similarity=0.582  Sum_probs=43.2

Q ss_pred             CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHh---cCCCCcCCCCCcCC
Q 005412          643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM---QKNLCPICKTTGLP  696 (697)
Q Consensus       643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~---qknsCPICRk~LLp  696 (697)
                      ...+...|+||++.|.+.   +.++|||.||..||.+|++   .+..||+||+.+..
T Consensus        16 ~~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           16 KLQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred             hCccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence            345667899999999876   7789999999999999997   45689999998753

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.14  E-value=1.2e-11  Score=114.93  Aligned_cols=46  Identities=37%  Similarity=0.908  Sum_probs=41.8

Q ss_pred             CCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          647 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       647 ~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      +..|+||++.|.++   +.++|||.||..||..|+..+..||+||+.+.
T Consensus        53 ~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   98 (138)
T 4ayc_A           53 ELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIK   98 (138)
T ss_dssp             HSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred             cCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence            35699999999876   78899999999999999999999999999764

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=2.8e-11  Score=104.01  Aligned_cols=53  Identities=34%  Similarity=0.727  Sum_probs=44.4

Q ss_pred             CCCCCCCcccccccccCCCCceEEeCCC-----ChhcHHHHHHHHhcC--CCCcCCCCCcC
Q 005412          642 EIPSDEEPCCICQEEYTDGDNLGILDCG-----HDFHTNCIKQWLMQK--NLCPICKTTGL  695 (697)
Q Consensus       642 ~~~~~~e~C~ICLEefe~ge~V~~LpCG-----H~FH~~CI~qWL~qk--nsCPICRk~LL  695 (697)
                      ....+...|.||+++|..++.+ ++||+     |.||.+||++||..+  .+||+||+.+.
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~   69 (80)
T 2d8s_A           10 ITPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI   69 (80)
T ss_dssp             CCCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred             CCCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence            3445667899999999877666 58996     999999999999976  48999999875

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=4.1e-11  Score=97.49  Aligned_cols=50  Identities=22%  Similarity=0.514  Sum_probs=42.8

Q ss_pred             CCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHh-cCCCCcCCCCCcCC
Q 005412          644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-QKNLCPICKTTGLP  696 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~-qknsCPICRk~LLp  696 (697)
                      ..+...|+||++.+.++   +.++|||.||..||.+|+. ....||+||+.+..
T Consensus        12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           12 VEDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVK   62 (66)
T ss_dssp             CCCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred             CCcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence            44567899999999887   5689999999999999995 56789999998753

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.11  E-value=5.8e-11  Score=99.58  Aligned_cols=50  Identities=30%  Similarity=0.602  Sum_probs=43.6

Q ss_pred             CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhc------CCCCcCCCCCcC
Q 005412          643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ------KNLCPICKTTGL  695 (697)
Q Consensus       643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~q------knsCPICRk~LL  695 (697)
                      ...+...|+||++.|.++   +.++|||.||..||..|+..      ...||+||+.+.
T Consensus        15 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~   70 (85)
T 2ecw_A           15 MIKEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP   70 (85)
T ss_dssp             CCCTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred             hCccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence            345567899999999887   68899999999999999997      678999999864

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.10  E-value=5.1e-11  Score=99.60  Aligned_cols=49  Identities=27%  Similarity=0.449  Sum_probs=43.3

Q ss_pred             CCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhc-CCCCcCCCCCcC
Q 005412          644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGL  695 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~q-knsCPICRk~LL  695 (697)
                      ..+...|+||++.|.++   +.++|||.||+.||.+|+.. +..||+||+.+.
T Consensus         5 ~~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~   54 (78)
T 1t1h_A            5 FPEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL   54 (78)
T ss_dssp             CSSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred             CcccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence            34567899999999887   77899999999999999997 788999999864

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=1.1e-10  Score=94.04  Aligned_cols=45  Identities=33%  Similarity=0.651  Sum_probs=39.4

Q ss_pred             CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHh---cCCCCcCC
Q 005412          643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM---QKNLCPIC  690 (697)
Q Consensus       643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~---qknsCPIC  690 (697)
                      ...+...|+||++.|.++   +.++|||.||..||.+|++   .+..||+|
T Consensus        16 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           16 KLQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             hCccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            345678899999999987   7789999999999999998   45689998

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=8.2e-11  Score=98.65  Aligned_cols=50  Identities=32%  Similarity=0.653  Sum_probs=43.6

Q ss_pred             CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhc------CCCCcCCCCCcC
Q 005412          643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ------KNLCPICKTTGL  695 (697)
Q Consensus       643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~q------knsCPICRk~LL  695 (697)
                      ...+...|+||++.|.+.   +.++|||.||..||..|+..      ...||+||+.+.
T Consensus        15 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~   70 (85)
T 2ecv_A           15 NVKEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ   70 (85)
T ss_dssp             CCCCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred             HccCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence            345667899999999876   67899999999999999987      788999999765

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.07  E-value=1.7e-11  Score=112.70  Aligned_cols=52  Identities=27%  Similarity=0.656  Sum_probs=2.8

Q ss_pred             CCCCCCcccccccccCCC-------------C--ceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCc
Q 005412          643 IPSDEEPCCICQEEYTDG-------------D--NLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG  694 (697)
Q Consensus       643 ~~~~~e~C~ICLEefe~g-------------e--~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~L  694 (697)
                      ....++.|+||+++|...             +  .+..++|+|.||..||.+||+.+.+||+||++.
T Consensus        44 wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~  110 (117)
T 4a0k_B           44 WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW  110 (117)
T ss_dssp             ECCCC--------------------------------------------------------------
T ss_pred             ecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence            345678999999999763             1  233458999999999999999999999999874

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.06  E-value=5.8e-11  Score=104.80  Aligned_cols=46  Identities=28%  Similarity=0.708  Sum_probs=40.9

Q ss_pred             CCcccccccccCCCCceEE-eCCCChhcHHHHHHHHhcC-CCCcCCCCCcC
Q 005412          647 EEPCCICQEEYTDGDNLGI-LDCGHDFHTNCIKQWLMQK-NLCPICKTTGL  695 (697)
Q Consensus       647 ~e~C~ICLEefe~ge~V~~-LpCGH~FH~~CI~qWL~qk-nsCPICRk~LL  695 (697)
                      ...|+||++.|.++   +. ++|||.||..||.+|+..+ ..||+||+.+.
T Consensus        22 ~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~   69 (100)
T 3lrq_A           22 VFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ   69 (100)
T ss_dssp             HTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence            46799999999876   66 8999999999999999987 69999999864

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.06  E-value=1e-10  Score=100.76  Aligned_cols=50  Identities=30%  Similarity=0.775  Sum_probs=43.3

Q ss_pred             CCCCCCCcccccccccCCCCceEEeC-CCChhcHHHHHHHHhcC--CCCcCCCCCc
Q 005412          642 EIPSDEEPCCICQEEYTDGDNLGILD-CGHDFHTNCIKQWLMQK--NLCPICKTTG  694 (697)
Q Consensus       642 ~~~~~~e~C~ICLEefe~ge~V~~Lp-CGH~FH~~CI~qWL~qk--nsCPICRk~L  694 (697)
                      +...+...|+||++.|.++   +.++ |||.||..||..|+...  ..||+||+.+
T Consensus         8 ~~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~   60 (92)
T 3ztg_A            8 DPIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND   60 (92)
T ss_dssp             CCCCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred             ccCCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence            3445678899999999987   7889 99999999999999854  5899999986

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.05  E-value=2.9e-11  Score=100.84  Aligned_cols=50  Identities=34%  Similarity=0.611  Sum_probs=43.2

Q ss_pred             CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhc-------CCCCcCCCCCcC
Q 005412          643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-------KNLCPICKTTGL  695 (697)
Q Consensus       643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~q-------knsCPICRk~LL  695 (697)
                      ...+...|+||++.|.++   +.++|||.||..||.+|+..       ...||+||+.+.
T Consensus         8 ~~~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~   64 (79)
T 2egp_A            8 NVQEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS   64 (79)
T ss_dssp             CCCCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred             hcccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence            345678899999999887   66899999999999999986       668999999874

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.02  E-value=1.1e-10  Score=102.12  Aligned_cols=46  Identities=33%  Similarity=0.704  Sum_probs=41.2

Q ss_pred             CCcccccccccCCCCceEEe-CCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          647 EEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       647 ~e~C~ICLEefe~ge~V~~L-pCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      ...|+||++.|.++   +.+ +|||.||..||..|+..+..||+||+.+.
T Consensus        22 ~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   68 (99)
T 2y43_A           22 LLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT   68 (99)
T ss_dssp             HTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred             CCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence            46799999999876   566 89999999999999999999999999764

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.02  E-value=1.1e-10  Score=103.87  Aligned_cols=47  Identities=28%  Similarity=0.719  Sum_probs=42.1

Q ss_pred             CCCcccccccccCCCCceEEe-CCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          646 DEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       646 ~~e~C~ICLEefe~ge~V~~L-pCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      +...|+||++.|.++   +.+ +|||.||..||..|+..+..||+||+.+.
T Consensus        14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   61 (108)
T 2ckl_A           14 PHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSKYCPICDVQVH   61 (108)
T ss_dssp             GGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred             CcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence            457899999999876   666 99999999999999999999999999865

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.02  E-value=9.8e-11  Score=105.65  Aligned_cols=51  Identities=29%  Similarity=0.675  Sum_probs=44.7

Q ss_pred             CCCCcccccccccCCC----CceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          645 SDEEPCCICQEEYTDG----DNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       645 ~~~e~C~ICLEefe~g----e~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      .+...|+||++.|.++    +.++.++|||.||..||.+||+.+..||+||+.+.
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   59 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN   59 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCT
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCc
Confidence            3567899999999764    55688899999999999999999999999999765

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.01  E-value=1.7e-10  Score=90.70  Aligned_cols=45  Identities=33%  Similarity=0.887  Sum_probs=38.5

Q ss_pred             CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHh---cCCCCcCC
Q 005412          643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM---QKNLCPIC  690 (697)
Q Consensus       643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~---qknsCPIC  690 (697)
                      ...+...|+||++.|.++   +.++|||.||..||.+|+.   .+..||+|
T Consensus        11 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           11 NLQVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CSCCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            345667899999999887   6789999999999999954   56789998

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.00  E-value=1.6e-10  Score=105.17  Aligned_cols=46  Identities=22%  Similarity=0.418  Sum_probs=40.7

Q ss_pred             CCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCC-CCcCCCCCcC
Q 005412          647 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN-LCPICKTTGL  695 (697)
Q Consensus       647 ~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qkn-sCPICRk~LL  695 (697)
                      ...|+||++.|.++   +.++|||.||..||..|+..+. .||+||+.+.
T Consensus        52 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   98 (124)
T 3fl2_A           52 TFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLG   98 (124)
T ss_dssp             HTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred             CCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCC
Confidence            46799999999977   7889999999999999998554 8999999874

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.95  E-value=2.8e-10  Score=108.42  Aligned_cols=47  Identities=28%  Similarity=0.590  Sum_probs=40.8

Q ss_pred             CCCcccccccccCCCCceEEe-CCCChhcHHHHHHHHhc-CCCCcCCCCCcC
Q 005412          646 DEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQ-KNLCPICKTTGL  695 (697)
Q Consensus       646 ~~e~C~ICLEefe~ge~V~~L-pCGH~FH~~CI~qWL~q-knsCPICRk~LL  695 (697)
                      +...|+||++.|.++   +.+ +|||.||..||.+|+.. +..||+||+.+.
T Consensus        53 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~  101 (165)
T 2ckl_B           53 SELMCPICLDMLKNT---MTTKECLHRFCADCIITALRSGNKECPTCRKKLV  101 (165)
T ss_dssp             HHHBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred             CCCCCcccChHhhCc---CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence            346799999999875   555 99999999999999997 778999999874

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.94  E-value=3.5e-10  Score=100.23  Aligned_cols=45  Identities=33%  Similarity=0.606  Sum_probs=39.9

Q ss_pred             CcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCC---CCcCCCCCcC
Q 005412          648 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN---LCPICKTTGL  695 (697)
Q Consensus       648 e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qkn---sCPICRk~LL  695 (697)
                      ..|+||++.|.++   +.++|||.||..||..|+..+.   .||+||+.+.
T Consensus        22 ~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   69 (112)
T 1jm7_A           22 LECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT   69 (112)
T ss_dssp             TSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred             CCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence            5699999999877   6689999999999999999764   8999999764

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.94  E-value=4.6e-10  Score=90.98  Aligned_cols=50  Identities=24%  Similarity=0.588  Sum_probs=40.9

Q ss_pred             CCCccccccc-ccCCCCce-EEeCCCChhcHHHHHHHHhc-CCCCcCCCCCcC
Q 005412          646 DEEPCCICQE-EYTDGDNL-GILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGL  695 (697)
Q Consensus       646 ~~e~C~ICLE-efe~ge~V-~~LpCGH~FH~~CI~qWL~q-knsCPICRk~LL  695 (697)
                      ++..|+||++ .|..+... +.++|||.||..||.+|+.. +..||+||+.+.
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   54 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR   54 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence            3577999999 78776433 45799999999999999875 467999999875

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.92  E-value=4.9e-10  Score=106.29  Aligned_cols=46  Identities=22%  Similarity=0.460  Sum_probs=40.8

Q ss_pred             CcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCC-CCcCCCCCcCC
Q 005412          648 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN-LCPICKTTGLP  696 (697)
Q Consensus       648 e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qkn-sCPICRk~LLp  696 (697)
                      ..|+||++.|.++   +.++|||.||..||..|+.... .||+||..+..
T Consensus        79 ~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~  125 (150)
T 1z6u_A           79 FMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ  125 (150)
T ss_dssp             TBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             CEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence            5699999999887   7799999999999999999764 79999998753

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.91  E-value=7.6e-10  Score=95.43  Aligned_cols=49  Identities=18%  Similarity=0.097  Sum_probs=44.4

Q ss_pred             CCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      ..+...|+||++.|.++   ++++|||.||+.||.+||..+.+||+||+.+.
T Consensus        11 ~p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~   59 (85)
T 2kr4_A           11 APDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT   59 (85)
T ss_dssp             CCTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred             CchheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence            34568899999999998   88999999999999999998899999998764

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.91  E-value=5.1e-10  Score=101.27  Aligned_cols=50  Identities=24%  Similarity=0.464  Sum_probs=43.6

Q ss_pred             CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCC-CCcCCCCCcC
Q 005412          643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN-LCPICKTTGL  695 (697)
Q Consensus       643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qkn-sCPICRk~LL  695 (697)
                      ...+...|+||++.+.++   +.++|||.||..||.+|+..+. .||+||+.+.
T Consensus        14 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   64 (118)
T 3hct_A           14 PLESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL   64 (118)
T ss_dssp             CCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred             CCCCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcC
Confidence            445567899999999877   7789999999999999999765 8999999865

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.89  E-value=2.5e-10  Score=102.40  Aligned_cols=47  Identities=26%  Similarity=0.569  Sum_probs=41.6

Q ss_pred             CCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhc-CCCCcCCCCCc
Q 005412          645 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTG  694 (697)
Q Consensus       645 ~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~q-knsCPICRk~L  694 (697)
                      .++..|+||++.|.++   +.|+|||.||..||.+|+.. +..||+||+.+
T Consensus        13 ~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~   60 (115)
T 3l11_A           13 LSECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRV   60 (115)
T ss_dssp             HHHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBC
T ss_pred             CCCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCccc
Confidence            3457799999999887   78899999999999999986 67899999976

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.88  E-value=6.7e-10  Score=100.17  Aligned_cols=52  Identities=29%  Similarity=0.652  Sum_probs=44.8

Q ss_pred             CCCCCcccccccccCCC----CceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          644 PSDEEPCCICQEEYTDG----DNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~g----e~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      ..+...|+||++.|...    ..++.++|||.||..||++||+.+.+||+||+.+.
T Consensus        69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~  124 (133)
T 4ap4_A           69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN  124 (133)
T ss_dssp             SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred             CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence            34567899999999753    34578899999999999999999999999999875

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=1e-09  Score=93.45  Aligned_cols=50  Identities=24%  Similarity=0.633  Sum_probs=42.2

Q ss_pred             CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcC--CCCcCCCCCc
Q 005412          643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK--NLCPICKTTG  694 (697)
Q Consensus       643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qk--nsCPICRk~L  694 (697)
                      ..+..+.|.||++.+..++  ....|+|.||..||.+||+.+  .+||+||+..
T Consensus        11 y~~~i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w   62 (74)
T 2ct0_A           11 YPDAVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW   62 (74)
T ss_dssp             CSSSSCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCC
T ss_pred             ccCCCCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcC
Confidence            3456688999999998763  444899999999999999977  8899999875

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.86  E-value=1.1e-09  Score=97.48  Aligned_cols=49  Identities=20%  Similarity=0.112  Sum_probs=44.4

Q ss_pred             CCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      ..+...|+||++.|.++   ++++|||.||+.||.+||..+.+||+||.++.
T Consensus        26 ~p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~   74 (100)
T 2kre_A           26 APDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLT   74 (100)
T ss_dssp             CSTTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred             CcHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence            34567899999999999   88999999999999999998889999999864

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.85  E-value=1.5e-09  Score=96.27  Aligned_cols=49  Identities=16%  Similarity=0.102  Sum_probs=44.4

Q ss_pred             CCCCCcccccccccCCCCceEEeCCC-ChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          644 PSDEEPCCICQEEYTDGDNLGILDCG-HDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~ge~V~~LpCG-H~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      ..++..|+||++.|+++   ++++|| |.||+.||.+||..+.+||+||+++.
T Consensus        19 ~p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~   68 (98)
T 1wgm_A           19 ACDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT   68 (98)
T ss_dssp             CCTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred             CcHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence            34567899999999999   889999 99999999999998889999999875

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.83  E-value=1.4e-09  Score=97.61  Aligned_cols=46  Identities=28%  Similarity=0.569  Sum_probs=41.2

Q ss_pred             CCcccccccccCCCCceEEeCCCChhcHHHHHHHHhc-CCCCcCCCCCcC
Q 005412          647 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGL  695 (697)
Q Consensus       647 ~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~q-knsCPICRk~LL  695 (697)
                      ...|+||++.|.++   +.++|||.||..||.+|+.. ...||+||+.+.
T Consensus        23 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   69 (116)
T 1rmd_A           23 SISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCF   69 (116)
T ss_dssp             HTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCC
Confidence            46799999999876   67899999999999999997 778999999864

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.82  E-value=2.8e-09  Score=107.29  Aligned_cols=49  Identities=16%  Similarity=0.129  Sum_probs=42.9

Q ss_pred             CCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcC-CCCcCCCCCcC
Q 005412          644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK-NLCPICKTTGL  695 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qk-nsCPICRk~LL  695 (697)
                      ......|+||++.|.++   ++++|||.||+.||..||... .+||+||.++.
T Consensus       205 ~~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~  254 (281)
T 2c2l_A          205 IPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT  254 (281)
T ss_dssp             CCSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred             CCcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence            34567899999999999   889999999999999999864 45999999874

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.77  E-value=2.3e-09  Score=87.72  Aligned_cols=47  Identities=32%  Similarity=0.658  Sum_probs=40.8

Q ss_pred             CCCcccccccccCCCCceEEe--CCCCh-hcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          646 DEEPCCICQEEYTDGDNLGIL--DCGHD-FHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       646 ~~e~C~ICLEefe~ge~V~~L--pCGH~-FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      ++..|.||++.+.+.   +.+  ||||. ||..|+..|++.+..||+||+.+.
T Consensus         7 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~   56 (64)
T 2vje_A            7 AIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ   56 (64)
T ss_dssp             GGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred             CcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence            456799999987765   555  99999 899999999999899999999874

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.77  E-value=3.2e-09  Score=115.00  Aligned_cols=46  Identities=33%  Similarity=0.689  Sum_probs=41.3

Q ss_pred             CCcccccccccCCCCceEEeCCCChhcHHHHHHHHh-cCCCCcCCCCCcC
Q 005412          647 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-QKNLCPICKTTGL  695 (697)
Q Consensus       647 ~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~-qknsCPICRk~LL  695 (697)
                      ...|+||++.+.+.   +.++|||.||..||..|+. .+..||+||+.+.
T Consensus       332 ~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~  378 (389)
T 2y1n_A          332 FQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK  378 (389)
T ss_dssp             SSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccC
Confidence            46899999998765   8899999999999999999 6889999999764

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.73  E-value=1.2e-09  Score=102.59  Aligned_cols=49  Identities=20%  Similarity=0.464  Sum_probs=42.6

Q ss_pred             CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCC-CCcCCCCCc
Q 005412          643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN-LCPICKTTG  694 (697)
Q Consensus       643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qkn-sCPICRk~L  694 (697)
                      ...+...|+||++.|.++   +.++|||.||..||.+|+.... .||+||+++
T Consensus        27 ~l~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~   76 (141)
T 3knv_A           27 KLEAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEG   76 (141)
T ss_dssp             GCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred             cCCcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence            345667899999999988   7789999999999999998765 899999864

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.72  E-value=3.7e-09  Score=86.28  Aligned_cols=48  Identities=29%  Similarity=0.621  Sum_probs=40.9

Q ss_pred             CCCCcccccccccCCCCceEEe--CCCCh-hcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          645 SDEEPCCICQEEYTDGDNLGIL--DCGHD-FHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       645 ~~~e~C~ICLEefe~ge~V~~L--pCGH~-FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      .....|.||++.+.+.   ..+  ||||. ||..|+.+|++....||+||+++.
T Consensus         5 ~~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~   55 (63)
T 2vje_B            5 NLLKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ   55 (63)
T ss_dssp             GGGSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred             CcCCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence            3456799999987665   455  99999 999999999998889999999874

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.72  E-value=2.1e-09  Score=85.41  Aligned_cols=45  Identities=27%  Similarity=0.496  Sum_probs=39.2

Q ss_pred             CCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          645 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       645 ~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      .+...|+||++.|.++   +.|+|||.||..||..|   +..||+||+.+.
T Consensus         4 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~   48 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWP   48 (56)
T ss_dssp             CCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred             ccCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEee
Confidence            4567799999999987   78899999999999884   678999999764

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.71  E-value=8.5e-09  Score=88.02  Aligned_cols=51  Identities=24%  Similarity=0.527  Sum_probs=40.0

Q ss_pred             CCCCCcccccccccCCCCceEEe--CCCChhcHHHHHHHHhc-CCCCcCCCCCcC
Q 005412          644 PSDEEPCCICQEEYTDGDNLGIL--DCGHDFHTNCIKQWLMQ-KNLCPICKTTGL  695 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~ge~V~~L--pCGH~FH~~CI~qWL~q-knsCPICRk~LL  695 (697)
                      ..++..|+||++.+...+. ..+  +|||.||..||.+|+.. ...||+||+.+.
T Consensus         8 ~~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~   61 (78)
T 1e4u_A            8 KEDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP   61 (78)
T ss_dssp             CCCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred             cccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence            4566789999999865332 333  59999999999999864 567999999764

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.69  E-value=2.3e-09  Score=96.85  Aligned_cols=44  Identities=27%  Similarity=0.613  Sum_probs=39.4

Q ss_pred             CCcccccccccCCCCceEEe-CCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          647 EEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       647 ~e~C~ICLEefe~ge~V~~L-pCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      ...|+||++.|.++   +.+ +|||.||..||..|+.  ..||+||+.+.
T Consensus        22 ~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~   66 (117)
T 1jm7_B           22 LLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW   66 (117)
T ss_dssp             TTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred             CCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence            46799999999887   777 9999999999999998  78999998764

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=8.5e-09  Score=90.25  Aligned_cols=46  Identities=28%  Similarity=0.573  Sum_probs=39.9

Q ss_pred             CCCCcccccccccCCCCceEEeC-CCChhcHHHHHHHHhcC------CCCcC--CCCC
Q 005412          645 SDEEPCCICQEEYTDGDNLGILD-CGHDFHTNCIKQWLMQK------NLCPI--CKTT  693 (697)
Q Consensus       645 ~~~e~C~ICLEefe~ge~V~~Lp-CGH~FH~~CI~qWL~qk------nsCPI--CRk~  693 (697)
                      .....|+||++.|.++   ++++ |||.||+.||.+||...      ..||+  |++.
T Consensus         5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            3567899999999988   8885 99999999999999864      48999  9865

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.62  E-value=8.3e-09  Score=86.42  Aligned_cols=42  Identities=29%  Similarity=0.597  Sum_probs=37.3

Q ss_pred             CCcccccccccCCCCceEEeCCCCh-hcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          647 EEPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       647 ~e~C~ICLEefe~ge~V~~LpCGH~-FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      +..|.||++.+.+.   +.++|||. ||..|+..|    ..||+||+.+.
T Consensus        24 ~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~   66 (74)
T 4ic3_A           24 EKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVIT   66 (74)
T ss_dssp             HTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred             CCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence            35799999998775   78899999 999999999    88999999764

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.59  E-value=1.7e-08  Score=96.29  Aligned_cols=50  Identities=24%  Similarity=0.469  Sum_probs=43.4

Q ss_pred             CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcC-CCCcCCCCCcC
Q 005412          643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK-NLCPICKTTGL  695 (697)
Q Consensus       643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qk-nsCPICRk~LL  695 (697)
                      ...+...|+||++.|.++   +.++|||.||..||.+|+..+ ..||+||+.+.
T Consensus        14 ~~~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   64 (170)
T 3hcs_A           14 PLESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL   64 (170)
T ss_dssp             CCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred             CCCCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcc
Confidence            445678899999999887   778999999999999999865 48999998764

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.58  E-value=2.8e-08  Score=97.49  Aligned_cols=49  Identities=16%  Similarity=0.119  Sum_probs=42.9

Q ss_pred             CCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcC-CCCcCCCCCcC
Q 005412          644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK-NLCPICKTTGL  695 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qk-nsCPICRk~LL  695 (697)
                      ......|+||++.|.++   ++++|||.||+.||..||... .+||+||.++.
T Consensus       103 ip~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~  152 (179)
T 2f42_A          103 IPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT  152 (179)
T ss_dssp             CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CcHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence            34567899999999998   888999999999999999864 46999998764

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.45  E-value=5.7e-08  Score=81.29  Aligned_cols=42  Identities=26%  Similarity=0.545  Sum_probs=35.5

Q ss_pred             CcccccccccCCCCceEEeCCCCh-hcHHHHHHHHhcCCCCcCCCCCcCC
Q 005412          648 EPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGLP  696 (697)
Q Consensus       648 e~C~ICLEefe~ge~V~~LpCGH~-FH~~CI~qWL~qknsCPICRk~LLp  696 (697)
                      ..|+||++.+.+.   +.++|||. ||..|+..    ...||+||+.+..
T Consensus        26 ~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~   68 (75)
T 2ecg_A           26 KLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVITF   68 (75)
T ss_dssp             HSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred             CCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence            4699999998776   77899999 99999964    3789999997753

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.44  E-value=3.7e-08  Score=105.04  Aligned_cols=52  Identities=27%  Similarity=0.620  Sum_probs=40.5

Q ss_pred             CCCCCcccccccccCCCCceE-----EeCCCChhcHHHHHHHHhcC-----------CCCcCCCCCcC
Q 005412          644 PSDEEPCCICQEEYTDGDNLG-----ILDCGHDFHTNCIKQWLMQK-----------NLCPICKTTGL  695 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~ge~V~-----~LpCGH~FH~~CI~qWL~qk-----------nsCPICRk~LL  695 (697)
                      .+...+|+||++.+.....+.     -.+|+|.||..||.+||+..           ..||.||+++.
T Consensus       305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            446678999999998743332     23799999999999999842           46999999764

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.43  E-value=1.4e-07  Score=78.20  Aligned_cols=47  Identities=23%  Similarity=0.614  Sum_probs=38.9

Q ss_pred             CCCCCCcccccccccCCCCceEEeCCCCh-hcHHHHHHHHhcCCCCcCCCCCcCC
Q 005412          643 IPSDEEPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGLP  696 (697)
Q Consensus       643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~-FH~~CI~qWL~qknsCPICRk~LLp  696 (697)
                      ...+...|.||++.+.+.   +.+||||. ||..|+..    ...||+||+.+..
T Consensus        11 ~~~~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~   58 (68)
T 2ea5_A           11 SEENSKDCVVCQNGTVNW---VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE   58 (68)
T ss_dssp             SCCCSSCCSSSSSSCCCC---EETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred             cCCCCCCCCCcCcCCCCE---EEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence            344567899999987665   88899999 99999984    4789999998753

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.37  E-value=6.9e-08  Score=83.89  Aligned_cols=48  Identities=29%  Similarity=0.554  Sum_probs=38.7

Q ss_pred             CCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcC--------CCCcC--CCCC
Q 005412          646 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK--------NLCPI--CKTT  693 (697)
Q Consensus       646 ~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qk--------nsCPI--CRk~  693 (697)
                      +...|.||++++..++.+..++|||.||.+||.++++.+        -.||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            456799999999876444445799999999999999732        36999  9987

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.36  E-value=1.4e-07  Score=77.00  Aligned_cols=45  Identities=13%  Similarity=0.124  Sum_probs=41.1

Q ss_pred             CcccccccccCCCCceEEe-CCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          648 EPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       648 e~C~ICLEefe~ge~V~~L-pCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      ..|+||++.++++   +++ +|||+|++.||.+||+.+.+||++++++.
T Consensus         4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~   49 (61)
T 2bay_A            4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS   49 (61)
T ss_dssp             CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred             EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence            5799999999987   777 89999999999999998888999999874

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.30  E-value=1.3e-07  Score=80.60  Aligned_cols=41  Identities=29%  Similarity=0.716  Sum_probs=35.8

Q ss_pred             CcccccccccCCCCceEEeCCCCh-hcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          648 EPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       648 e~C~ICLEefe~ge~V~~LpCGH~-FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      ..|.||++.+.+.   +.+||||. ||..|+..|    ..||+||+.+.
T Consensus        19 ~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~   60 (79)
T 2yho_A           19 MLCMVCCEEEINS---TFCPCGHTVCCESCAAQL----QSCPVCRSRVE   60 (79)
T ss_dssp             TBCTTTSSSBCCE---EEETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred             CEeEEeCcccCcE---EEECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence            5699999988765   88899999 999999987    38999999764

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.30  E-value=2e-07  Score=96.32  Aligned_cols=47  Identities=28%  Similarity=0.450  Sum_probs=39.8

Q ss_pred             CCCcccccccccCCCCceEE-eCCCChhcHHHHHHHHhcC--CCCcC--CCCCcC
Q 005412          646 DEEPCCICQEEYTDGDNLGI-LDCGHDFHTNCIKQWLMQK--NLCPI--CKTTGL  695 (697)
Q Consensus       646 ~~e~C~ICLEefe~ge~V~~-LpCGH~FH~~CI~qWL~qk--nsCPI--CRk~LL  695 (697)
                      ....|+||++.|.++   +. +.|||.||+.||.+|+...  ..||+  ||+.+.
T Consensus       180 ~el~CPIcl~~f~DP---Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~  231 (267)
T 3htk_C          180 IELTCPITCKPYEAP---LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS  231 (267)
T ss_dssp             CCSBCTTTSSBCSSE---EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred             eeeECcCccCcccCC---eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence            446799999999888   55 4999999999999999864  46999  998653

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.28  E-value=3.9e-07  Score=74.20  Aligned_cols=48  Identities=31%  Similarity=0.746  Sum_probs=37.4

Q ss_pred             CCCCcccccccccCCCCceEEeCCC--C---hhcHHHHHHHHhc--CCCCcCCCCCcC
Q 005412          645 SDEEPCCICQEEYTDGDNLGILDCG--H---DFHTNCIKQWLMQ--KNLCPICKTTGL  695 (697)
Q Consensus       645 ~~~e~C~ICLEefe~ge~V~~LpCG--H---~FH~~CI~qWL~q--knsCPICRk~LL  695 (697)
                      .+...|.||+++..  +.+ .+||.  |   .||..||.+|+..  +.+||+||+.+.
T Consensus         4 ~~~~~CrIC~~~~~--~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEELG--NER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECS--CCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCCC--Cce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            45678999999843  333 57855  4   8999999999985  568999998764

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.20  E-value=2.2e-07  Score=99.30  Aligned_cols=43  Identities=26%  Similarity=0.651  Sum_probs=38.1

Q ss_pred             CCCcccccccccCCCCceEEeCCCCh-hcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          646 DEEPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       646 ~~e~C~ICLEefe~ge~V~~LpCGH~-FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      ++..|+||++.+...   +.++|||. ||..||..|    ..||+||+.+.
T Consensus       294 ~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~  337 (345)
T 3t6p_A          294 EERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIK  337 (345)
T ss_dssp             TTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred             CCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence            457899999999776   88899999 999999998    78999999764

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.64  E-value=2.6e-05  Score=69.86  Aligned_cols=45  Identities=20%  Similarity=0.370  Sum_probs=37.2

Q ss_pred             cccccccccCCCCceEEeCCCChhcHHHHHHHHhc-CCCCcCCCCCcC
Q 005412          649 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGL  695 (697)
Q Consensus       649 ~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~q-knsCPICRk~LL  695 (697)
                      .|.+|--.+..-  .+.+||+|+||.+|+..|.++ .+.||.|+.++.
T Consensus         3 fC~~C~~Pi~iy--gRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~   48 (101)
T 3vk6_A            3 FCDKCGLPIKVY--GRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ   48 (101)
T ss_dssp             BCTTTCSBCSEE--EEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred             ecCccCCCeEEE--eeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence            488887777653  467799999999999999875 578999999874

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.39  E-value=8.1e-05  Score=75.79  Aligned_cols=46  Identities=24%  Similarity=0.650  Sum_probs=38.7

Q ss_pred             CCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCC--CCcCCCCC
Q 005412          646 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN--LCPICKTT  693 (697)
Q Consensus       646 ~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qkn--sCPICRk~  693 (697)
                      ....|.||.+....+  ..+-.|+|.||..|+.+|++.+.  .||.|++.
T Consensus       179 ~i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~  226 (238)
T 3nw0_A          179 AVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDY  226 (238)
T ss_dssp             TCCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCB
T ss_pred             CCCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence            478899999999876  34445999999999999998654  89999985

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=93.62  E-value=0.038  Score=47.97  Aligned_cols=35  Identities=14%  Similarity=0.456  Sum_probs=26.9

Q ss_pred             CCCcccccccccCCCCceEEeCCCChhcHHHHHHH
Q 005412          646 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQW  680 (697)
Q Consensus       646 ~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qW  680 (697)
                      ++..|.||++.|...-....+.|+|.||..|+..+
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~   36 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT   36 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence            35679999987544333445899999999999983

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=92.53  E-value=0.078  Score=43.87  Aligned_cols=50  Identities=22%  Similarity=0.426  Sum_probs=36.2

Q ss_pred             CCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCC----CCcCCCCCcCC
Q 005412          644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN----LCPICKTTGLP  696 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qkn----sCPICRk~LLp  696 (697)
                      ......|.||.+.   ++.+..-.|...||..|++..|....    .||.|+....+
T Consensus         9 ~~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p   62 (66)
T 2lri_C            9 LAPGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP   62 (66)
T ss_dssp             CCTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCC
T ss_pred             CCCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCcc
Confidence            3445679999853   44444447999999999998887543    59999876544

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=87.78  E-value=0.26  Score=53.29  Aligned_cols=46  Identities=17%  Similarity=0.244  Sum_probs=31.5

Q ss_pred             CcccccccccCCCCceEEeCCCChhcHH--HHHHHHhcC--CCCcCCCCCcC
Q 005412          648 EPCCICQEEYTDGDNLGILDCGHDFHTN--CIKQWLMQK--NLCPICKTTGL  695 (697)
Q Consensus       648 e~C~ICLEefe~ge~V~~LpCGH~FH~~--CI~qWL~qk--nsCPICRk~LL  695 (697)
                      ..|+|-+..+..+  ++-..|.|.-|.+  -+.+...++  -.||+|.+.+.
T Consensus       250 L~CPlS~~ri~~P--vRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~  299 (371)
T 3i2d_A          250 LQCPISYTRMKYP--SKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA  299 (371)
T ss_dssp             SBCTTTSSBCSSE--EEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred             ecCCCcccccccc--CcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence            5699988887776  5666899995544  344433333  34999998764

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=84.46  E-value=0.13  Score=41.49  Aligned_cols=49  Identities=24%  Similarity=0.507  Sum_probs=35.0

Q ss_pred             CCCCcccccccccCCCCceEEe-CCCChhcHHHHHHHHh-----cCCCCcCCCCC
Q 005412          645 SDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLM-----QKNLCPICKTT  693 (697)
Q Consensus       645 ~~~e~C~ICLEefe~ge~V~~L-pCGH~FH~~CI~qWL~-----qknsCPICRk~  693 (697)
                      .+...|.||...+.+...++.- .|...||..|+.--..     .+-.||.|+..
T Consensus         4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k   58 (64)
T 1we9_A            4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence            4567799999998655444443 6999999999875432     34569999653

>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B

Probab=84.04  E-value=0.53  Score=50.75  Aligned_cols=46  Identities=22%  Similarity=0.380  Sum_probs=32.0

Q ss_pred             CcccccccccCCCCceEEeCCCCh--hcHHHHHHHHhcCC--CCcCCCCCcC
Q 005412          648 EPCCICQEEYTDGDNLGILDCGHD--FHTNCIKQWLMQKN--LCPICKTTGL  695 (697)
Q Consensus       648 e~C~ICLEefe~ge~V~~LpCGH~--FH~~CI~qWL~qkn--sCPICRk~LL  695 (697)
                      ..|+|-+..+..+  ++-..|.|.  |-..-+.+...++.  .||+|.+.+.
T Consensus       216 L~CPlS~~ri~~P--~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~  265 (360)
T 4fo9_A          216 LMCPLGKMRLTIP--CRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA  265 (360)
T ss_dssp             SBCTTTCSBCSSE--EEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred             eeCCCccceeccC--CcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence            5699988888776  566689999  55444444444433  4999998764

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=83.67  E-value=0.47  Score=38.34  Aligned_cols=48  Identities=23%  Similarity=0.619  Sum_probs=34.0

Q ss_pred             CCCCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcC----CCCcCCCCCc
Q 005412          644 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKTTG  694 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qk----nsCPICRk~L  694 (697)
                      ...+..|.||...   ++.+..-.|...||..|+..-|...    =.||.|++..
T Consensus         8 ~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~g   59 (61)
T 2l5u_A            8 TDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEG   59 (61)
T ss_dssp             SCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGGS
T ss_pred             CCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccccc
Confidence            4456789999873   3333333699999999999865432    2599998754

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=83.24  E-value=0.48  Score=56.76  Aligned_cols=49  Identities=18%  Similarity=0.103  Sum_probs=43.2

Q ss_pred             CCCCCcccccccccCCCCceEEeCCC-ChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          644 PSDEEPCCICQEEYTDGDNLGILDCG-HDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~ge~V~~LpCG-H~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      .-+...|+|-++-+.++   ++++.| +.|-+.+|.+||..+.+||+-|.++.
T Consensus       888 iP~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~  937 (968)
T 3m62_A          888 VPDEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLK  937 (968)
T ss_dssp             SCGGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred             CcHHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCC
Confidence            34567799999999999   899997 58999999999999999999998764

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=82.71  E-value=0.86  Score=39.80  Aligned_cols=37  Identities=22%  Similarity=0.538  Sum_probs=26.7

Q ss_pred             CCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHH
Q 005412          643 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQW  680 (697)
Q Consensus       643 ~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qW  680 (697)
                      ....++.|.||-- |...+....-.|+-.||..|+++-
T Consensus        11 ~~~~D~~C~VC~~-~t~~~l~pCRvC~RvfH~~CL~r~   47 (89)
T 1wil_A           11 PVVNDEMCDVCEV-WTAESLFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCCSCCCTTTCC-CCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred             CCCCCcccCcccc-ccccceeccccccccccHhhcccc
Confidence            3456788999863 445543444469999999999996

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=81.54  E-value=0.52  Score=36.31  Aligned_cols=44  Identities=25%  Similarity=0.641  Sum_probs=30.7

Q ss_pred             cccccccccCCCCceEEeCCCChhcHHHHHHHHhcC----CCCcCCCC
Q 005412          649 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKT  692 (697)
Q Consensus       649 ~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qk----nsCPICRk  692 (697)
                      .|.||...-..++.+..-.|...||..|+..=|...    =.||.|+.
T Consensus         2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~   49 (51)
T 1f62_A            2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence            588998765444334444799999999997655432    24999975

>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2

Probab=81.00  E-value=1.4  Score=37.19  Aligned_cols=48  Identities=21%  Similarity=0.371  Sum_probs=32.5

Q ss_pred             CCCcccccccccCCCCceEEe-CCCChhcHHHHHHHHh-----cCCCCcCCCCCc
Q 005412          646 DEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLM-----QKNLCPICKTTG  694 (697)
Q Consensus       646 ~~e~C~ICLEefe~ge~V~~L-pCGH~FH~~CI~qWL~-----qknsCPICRk~L  694 (697)
                      ....| ||...+.....++.- .|...||..|+.--..     .+..||.|+...
T Consensus        11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~   64 (79)
T 1wep_A           11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF   64 (79)
T ss_dssp             CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred             CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence            33445 999988644444333 6999999999964322     345799998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	697
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	2e-17
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	9e-15
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	1e-13
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	4e-13
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	6e-12
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	5e-11
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	2e-10
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	6e-10
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	8e-08
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	2e-07
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	2e-07
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	1e-06
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	4e-05
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	7e-05
d1wesa_	71	g.50.1.2 (A:) PHD Inhibitor of growth protein 2, I	3e-04
d1wewa_	78	g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c	4e-04
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	6e-04
d2c2la2	80	g.44.1.2 (A:225-304) STIP1 homology and U box-cont	8e-04
d1wema_	76	g.50.1.2 (A:) Death associated transcription facto	0.002

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 74.1 bits (182), Expect = 2e-17
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 646 DEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTT 693
           D   C +C  E  DG+    L  CGH FH  C+  WL   + CP+C+ T
Sbjct: 4   DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLT 52

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 67.3 bits (164), Expect = 9e-15
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 645 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT 692
           +  E C IC E+ ++      L C H F   CI +W+ Q   CP+CK 
Sbjct: 3   TVAERCPICLEDPSNYSM--ALPCLHAFCYVCITRWIRQNPTCPLCKV 48

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.2 bits (156), Expect = 1e-13
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 6/69 (8%)

Query: 625 ETIMKIMKQKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWL-MQ 683
           +  +K+ +++    L  E+ S  + C IC E   D   + I  CGH   T+C+  W   +
Sbjct: 3   QDHIKVTQEQY--ELYCEMGSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESE 57

Query: 684 KNLCPICKT 692
              CP C+ 
Sbjct: 58  GQGCPFCRC 66

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.2 bits (153), Expect = 4e-13
 Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 15/62 (24%)

Query: 646 DEEPCCICQEEYTD---------------GDNLGILDCGHDFHTNCIKQWLMQKNLCPIC 690
             + C IC+    D                  +    C H FH +CI +WL  + +CP+ 
Sbjct: 20  VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 79

Query: 691 KT 692
             
Sbjct: 80  NR 81

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (142), Expect = 6e-12
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 646 DEEPCCICQEEYTDGDNLGIL--DCGHDFHTNCIKQWL-MQKNLCPICKTT 693
           D++ C  C+       +L ++   CGH    +C+          CP C T 
Sbjct: 2   DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTP 52

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 56.4 bits (135), Expect = 5e-11
 Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 4/52 (7%)

Query: 646 DEEPCCICQEEYTDGDNL--GILDCGHDFHTNCIKQWL--MQKNLCPICKTT 693
           D   C IC EE  +      G      + H +C+  WL   +   C IC   
Sbjct: 5   DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVV 56

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (131), Expect = 2e-10
 Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 650 CCICQEEYTDGD-NLGILDCGHDFHTNCIKQWLMQKNL-CPICKT 692
           C +C E     D N     CG+     C  +    +N  CP C+ 
Sbjct: 3   CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRK 47

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (128), Expect = 6e-10
 Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 6/43 (13%)

Query: 650 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT 692
           C  CQ E        +L C H   + C++        CPIC+ 
Sbjct: 9   CQQCQAEAKCPK---LLPCLHTLCSGCLEAS---GMQCPICQA 45

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (115), Expect = 8e-08
 Identities = 14/55 (25%), Positives = 18/55 (32%), Gaps = 8/55 (14%)

Query: 645 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNL--------CPICK 691
           S    C +C  EY       I  C   F T C+KQ++             CP   
Sbjct: 3   SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (112), Expect = 2e-07
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 6/47 (12%)

Query: 650 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN---LCPICKTT 693
           C IC E   +        C H F   C+ + L QK     CP+CK  
Sbjct: 24  CPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKND 67

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.8 bits (111), Expect = 2e-07
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 7/60 (11%)

Query: 638 SLEIEIPSDEEP---CCICQEEYTDGDNLGILDCGHDFHTNCIKQWL-MQKNLCPICKTT 693
            L ++ P+       C IC+    D        C H F   CI + L +  + CP C+  
Sbjct: 11  LLAVDFPAHFVKSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYP 67

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.8 bits (107), Expect = 1e-06
 Identities = 22/94 (23%), Positives = 29/94 (30%), Gaps = 28/94 (29%)

Query: 619 STGLNEETIMKIMKQKRYPSLEIEIPSDEEPCCICQE---------------EYTDGDNL 663
           S+G  E+ I K  ++ +           EE C IC E                       
Sbjct: 5   SSGEPEQVIRKYTEELKVA--------PEEDCIICMEKLAVASGYSDMTDSKALGPMVVG 56

Query: 664 GILDCGHDFHTNCIKQWLMQKNL-----CPICKT 692
            +  C H FH  C+       N      CP CKT
Sbjct: 57  RLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKT 90

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 4e-05
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 4/48 (8%)

Query: 646 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTT 693
               C  C     +   L    C H F +NC+   +     CP+C T 
Sbjct: 21  KLLRCSRCTNILREPVCL--GGCEHIFCSNCVSDCIGTG--CPVCYTP 64

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (90), Expect = 7e-05
 Identities = 6/42 (14%), Positives = 12/42 (28%), Gaps = 2/42 (4%)

Query: 650 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 691
           C I  +                F  + ++Q++      PI  
Sbjct: 3   CAISGKVPRRPVL--SPKSRTIFEKSLLEQYVKDTGNDPITN 42

>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 71

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (87), Expect = 3e-04
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 637 PSLEIEIPSDEEPCCICQEEYTDGDNLGI---LDCGHDFHTNCIKQWLMQKN--LCPICK 691
            S E  I  +E   C+C +    G+ +G          FH +C+      K    CP C+
Sbjct: 5   SSGEFAIDPNEPTYCLCNQVS-YGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCR 63

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Sumoylation ligase E3, SIZ1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 37.4 bits (86), Expect = 4e-04
 Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 11/72 (15%)

Query: 637 PSLEIEIPSDEEPCCICQEEYTDGDNLGI--LDCGHDFHTNCI---------KQWLMQKN 685
            S E     + +  C+C         +      C    H  C+            L +  
Sbjct: 5   SSGEDPFQPEIKVRCVCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESF 64

Query: 686 LCPICKTTGLPT 697
            C IC+ T  P+
Sbjct: 65  YCEICRLTSGPS 76

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 37.0 bits (85), Expect = 6e-04
 Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 4/55 (7%)

Query: 642 EIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 696
           E P     C I  E   D     I+  G  +  + I++WL   +         L 
Sbjct: 4   EFPEYFR-CPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.8 bits (84), Expect = 8e-04
 Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 5/53 (9%)

Query: 642 EIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWL-MQKNLCPICKTT 693
           +IP D     I  E   +     I   G  +    I++ L    +  P+ ++ 
Sbjct: 3   DIP-DYLCGKISFELMREPC---ITPSGITYDRKDIEEHLQRVGHFNPVTRSP 51

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.1 bits (80), Expect = 0.002
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 9/70 (12%)

Query: 637 PSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNL---------C 687
            S E E+       CIC++ + +   +    C   FH +C+     +  L         C
Sbjct: 5   SSGECEVYDPNALYCICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYIC 64

Query: 688 PICKTTGLPT 697
           P C     P+
Sbjct: 65  PNCTILSGPS 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	697
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.53
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.32
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.28
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.24
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.23
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.18
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.16
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.08
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.03
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.02
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.98
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.84
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.83
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.8
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.79
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.65
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.31
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	89.87
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	88.0
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	81.65
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	80.5

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.53  E-value=1.8e-15  Score=119.66  Aligned_cols=51  Identities=37%  Similarity=0.990  Sum_probs=46.5

Q ss_pred             CCCCcccccccccCCCCceEEe-CCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          645 SDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       645 ~~~e~C~ICLEefe~ge~V~~L-pCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      +++..|+||+++|..++.+..+ .|+|.||.+||.+||+.+.+||+||++++
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            3556799999999999988887 59999999999999999999999999886

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.32  E-value=3.1e-13  Score=110.36  Aligned_cols=48  Identities=35%  Similarity=0.699  Sum_probs=42.2

Q ss_pred             CCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          646 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       646 ~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      ..+.|+||++.|.+.  ++.++|||.||.+||.+||+.+..||+||+++.
T Consensus         4 ~~d~C~IC~~~~~~~--~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~   51 (68)
T d1chca_           4 VAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCCCCccCCcCccCC--cEEeCCCCcCcHHHHHHHHHhCCcCCCCCcchH
Confidence            456799999999754  567899999999999999999999999999864

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=8.8e-13  Score=116.76  Aligned_cols=49  Identities=33%  Similarity=0.589  Sum_probs=39.1

Q ss_pred             CCCcccccccccCCC---------------CceEEeCCCChhcHHHHHHHHhcC-----CCCcCCCCCc
Q 005412          646 DEEPCCICQEEYTDG---------------DNLGILDCGHDFHTNCIKQWLMQK-----NLCPICKTTG  694 (697)
Q Consensus       646 ~~e~C~ICLEefe~g---------------e~V~~LpCGH~FH~~CI~qWL~qk-----nsCPICRk~L  694 (697)
                      .++.|+||+++|...               ..+..++|+|.||..||..||+.+     .+||+||+.+
T Consensus        24 ~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~   92 (114)
T d1v87a_          24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY   92 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred             ccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchh
Confidence            356799999998642               235667899999999999999854     3799999865

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.4e-12  Score=109.93  Aligned_cols=51  Identities=27%  Similarity=0.628  Sum_probs=42.9

Q ss_pred             CCCCcccccccccCCCC---------------ceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          645 SDEEPCCICQEEYTDGD---------------NLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       645 ~~~e~C~ICLEefe~ge---------------~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      ..++.|+||++.+....               .+..++|+|+||.+||.+||+.+.+||+||++..
T Consensus        19 ~~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          19 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCCcCCCCCCccc
Confidence            45667999999887533               2567799999999999999999999999999753

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.6e-12  Score=107.89  Aligned_cols=47  Identities=32%  Similarity=0.653  Sum_probs=40.8

Q ss_pred             CCcccccccccCCCCceEEeCCCChhcHHHHHHHHhc-CCCCcCCCCCcCC
Q 005412          647 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGLP  696 (697)
Q Consensus       647 ~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~q-knsCPICRk~LLp  696 (697)
                      ...|+||++.+.+.   +.++|||.||..||..||.. ++.||+||+.+..
T Consensus        23 ~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~   70 (79)
T d1fbva4          23 FQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG   70 (79)
T ss_dssp             TTBCTTTSSSBCCE---ECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCC
T ss_pred             CCCCccCCCcCCCe---EEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccC
Confidence            45799999998765   88899999999999999984 5789999998764

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=5.4e-12  Score=102.17  Aligned_cols=50  Identities=24%  Similarity=0.557  Sum_probs=40.4

Q ss_pred             CCCcccccccccCCCC--ceEEeCCCChhcHHHHHHHHhc-CCCCcCCCCCcC
Q 005412          646 DEEPCCICQEEYTDGD--NLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGL  695 (697)
Q Consensus       646 ~~e~C~ICLEefe~ge--~V~~LpCGH~FH~~CI~qWL~q-knsCPICRk~LL  695 (697)
                      ++..|+||++++....  .+..++|||.||.+||.+||.. +..||+||+.+.
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~   54 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR   54 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcc
Confidence            5688999999865432  3456689999999999999975 567999999874

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=2.4e-12  Score=100.07  Aligned_cols=47  Identities=23%  Similarity=0.448  Sum_probs=39.7

Q ss_pred             cccccccccCCCCce-EEeCCCChhcHHHHHHHHhc-CCCCcCCCCCcC
Q 005412          649 PCCICQEEYTDGDNL-GILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGL  695 (697)
Q Consensus       649 ~C~ICLEefe~ge~V-~~LpCGH~FH~~CI~qWL~q-knsCPICRk~LL  695 (697)
                      +|+||+++|..++.+ ..++|||.||.+||++|++. +..||+||+++-
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~   50 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP   50 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCS
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCC
Confidence            699999999876554 45589999999999999986 457999999864

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.08  E-value=1.3e-11  Score=97.26  Aligned_cols=44  Identities=14%  Similarity=0.142  Sum_probs=40.0

Q ss_pred             cccccccccCCCCceEEe-CCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          649 PCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       649 ~C~ICLEefe~ge~V~~L-pCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      .|+||++.++++   +.+ .|||+||++||.+||+++..||+||+++.
T Consensus         2 ~C~Ic~~~~~~P---v~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~   46 (56)
T d2baya1           2 LCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS   46 (56)
T ss_dssp             CCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred             CCccCCchHHhc---CccCCCCCcccHHHHHHHHhhccCCCccCCcCC
Confidence            599999999887   666 59999999999999999999999999874

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=4.8e-11  Score=102.11  Aligned_cols=46  Identities=28%  Similarity=0.569  Sum_probs=40.4

Q ss_pred             CCcccccccccCCCCceEEeCCCChhcHHHHHHHHhc-CCCCcCCCCCcC
Q 005412          647 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGL  695 (697)
Q Consensus       647 ~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~q-knsCPICRk~LL  695 (697)
                      ...|+||++.+.++   +.++|||.||+.||.+|++. +..||+||.++.
T Consensus        23 ~l~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~   69 (86)
T d1rmda2          23 SISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCF   69 (86)
T ss_dssp             HTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CcCCccCCcchhcc---eecCCCChhhHHHHHHHHhhCCCcCcccCCCCC
Confidence            35699999999887   88999999999999999985 467999999765

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=5e-11  Score=103.97  Aligned_cols=45  Identities=33%  Similarity=0.606  Sum_probs=39.6

Q ss_pred             CcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCC---CCcCCCCCcC
Q 005412          648 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN---LCPICKTTGL  695 (697)
Q Consensus       648 e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qkn---sCPICRk~LL  695 (697)
                      ..|+||++.|.++   +.++|||.||..||..|+..+.   .||+||+.+.
T Consensus        22 l~CpIC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   69 (103)
T d1jm7a_          22 LECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT   69 (103)
T ss_dssp             TSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred             cCCCccCchhCCe---EEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCC
Confidence            4699999999887   6789999999999999998653   7999999874

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=3.2e-11  Score=95.43  Aligned_cols=45  Identities=27%  Similarity=0.500  Sum_probs=39.2

Q ss_pred             CCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcCCCCcCCCCCcCC
Q 005412          646 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP  696 (697)
Q Consensus       646 ~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qknsCPICRk~LLp  696 (697)
                      +...|+||++.|.++   +.|+|||.||..||++|   +..||+||+++..
T Consensus         5 ~~l~C~IC~~~~~~p---~~lpCgH~fC~~Ci~~~---~~~CP~Cr~~~~~   49 (56)
T d1bora_           5 QFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPL   49 (56)
T ss_dssp             CCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSC
T ss_pred             CCCCCcccCcccCCC---EEecCCCHHhHHHHHcC---CCcCcCCCCcccC
Confidence            346899999999887   78899999999999876   6789999998864

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.84  E-value=8.1e-10  Score=91.57  Aligned_cols=48  Identities=27%  Similarity=0.462  Sum_probs=42.5

Q ss_pred             CCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcC-CCCcCCCCCcCC
Q 005412          646 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK-NLCPICKTTGLP  696 (697)
Q Consensus       646 ~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qk-nsCPICRk~LLp  696 (697)
                      ++..|+||++.|.++   +.++|||.||+.||.+|+..+ ..||+|+.++..
T Consensus         7 ~~l~CpIc~~~m~dP---V~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~   55 (78)
T d1t1ha_           7 EYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             SSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             ccCCCcCcCchhhCc---eEccCCCcchHHHHHHHHHHCCCCCCcccccCCc
Confidence            568899999999988   788999999999999999864 579999998653

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.83  E-value=7.2e-10  Score=92.43  Aligned_cols=47  Identities=17%  Similarity=0.154  Sum_probs=42.0

Q ss_pred             CCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhc-CCCCcCCCCCcC
Q 005412          646 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGL  695 (697)
Q Consensus       646 ~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~q-knsCPICRk~LL  695 (697)
                      ++..|+||++.|.++   +.++|||.||+.||.+||.. +..||+||..+.
T Consensus         6 ~~l~CpIc~~l~~dP---v~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~   53 (80)
T d2c2la2           6 DYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT   53 (80)
T ss_dssp             STTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred             ccccCcCcCchhhhh---cccCCcCeecHHHHHHHHhcCCccCCCcccccc
Confidence            567899999999998   78999999999999999985 567999998764

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.80  E-value=9.5e-10  Score=87.10  Aligned_cols=51  Identities=27%  Similarity=0.568  Sum_probs=38.2

Q ss_pred             CCCCCcccccccccCCCCce--EEeCCCChhcHHHHHHHHhc--CCCCcCCCCCc
Q 005412          644 PSDEEPCCICQEEYTDGDNL--GILDCGHDFHTNCIKQWLMQ--KNLCPICKTTG  694 (697)
Q Consensus       644 ~~~~e~C~ICLEefe~ge~V--~~LpCGH~FH~~CI~qWL~q--knsCPICRk~L  694 (697)
                      .++...|.||++++......  ....|+|.||..||.+|+..  +.+||+||++.
T Consensus         3 ded~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~   57 (60)
T d1vyxa_           3 DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVY   57 (60)
T ss_dssp             TCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBC
T ss_pred             CCCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCee
Confidence            34567899999998765221  11235699999999999964  56899999875

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=3.9e-10  Score=97.24  Aligned_cols=43  Identities=26%  Similarity=0.584  Sum_probs=36.8

Q ss_pred             CcccccccccCCCCceEE-eCCCChhcHHHHHHHHhcCCCCcCCCCCcC
Q 005412          648 EPCCICQEEYTDGDNLGI-LDCGHDFHTNCIKQWLMQKNLCPICKTTGL  695 (697)
Q Consensus       648 e~C~ICLEefe~ge~V~~-LpCGH~FH~~CI~qWL~qknsCPICRk~LL  695 (697)
                      ..|+||++.|.++   +. .+|||.||..||.+|+.  ..||+||..+.
T Consensus        23 l~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~   66 (97)
T d1jm7b_          23 LRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW   66 (97)
T ss_dssp             TSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred             CCCccCCchhhcC---ceeCCCCCchhHHHHHHHHh--ccccccCCcCc
Confidence            5699999999887   44 48999999999999985  45999998764

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=8e-09  Score=89.64  Aligned_cols=49  Identities=16%  Similarity=0.084  Sum_probs=43.3

Q ss_pred             CCCCcccccccccCCCCceEEeCCC-ChhcHHHHHHHHhcCCCCcCCCCCcCC
Q 005412          645 SDEEPCCICQEEYTDGDNLGILDCG-HDFHTNCIKQWLMQKNLCPICKTTGLP  696 (697)
Q Consensus       645 ~~~e~C~ICLEefe~ge~V~~LpCG-H~FH~~CI~qWL~qknsCPICRk~LLp  696 (697)
                      -++..|+||++.|.++   ++++|+ |.||+.||.+||..+..||+||+++..
T Consensus        20 P~~f~CPI~~~lm~dP---V~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~   69 (98)
T d1wgma_          20 CDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             CTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             cHHhCCcCchhHHHHH---HhcccccchhhHHHHHHHHHhcCCcccccccccc
Confidence            3568899999999998   888866 589999999999999999999998753

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=8.8e-08  Score=81.27  Aligned_cols=47  Identities=28%  Similarity=0.485  Sum_probs=37.4

Q ss_pred             CCCcccccccccCCCCceEEeCCCChhcHHHHHHHHhcC--------CCCcCCCC
Q 005412          646 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK--------NLCPICKT  692 (697)
Q Consensus       646 ~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qk--------nsCPICRk  692 (697)
                      ....|+||++++...+.+..++|+|.||.+||..|++.+        -.||.|+-
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            457899999999876656666899999999999999732        14998653

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.87  E-value=0.049  Score=40.42  Aligned_cols=44  Identities=25%  Similarity=0.661  Sum_probs=31.5

Q ss_pred             cccccccccCCCCceEEeCCCChhcHHHHHHHHhcCC----CCcCCCC
Q 005412          649 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN----LCPICKT  692 (697)
Q Consensus       649 ~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qWL~qkn----sCPICRk  692 (697)
                      .|.||...-..++.|..-.|...||..|++.-+....    .||.||.
T Consensus         2 ~C~vC~~~~~~~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCCCCCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            5889987654443333337999999999998765422    4999985

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.00  E-value=0.038  Score=42.86  Aligned_cols=51  Identities=25%  Similarity=0.492  Sum_probs=36.3

Q ss_pred             CCCcccccccccCCCCceE-EeCCCChhcHHHHHHHHh-----cCCCCcCCCCCcCC
Q 005412          646 DEEPCCICQEEYTDGDNLG-ILDCGHDFHTNCIKQWLM-----QKNLCPICKTTGLP  696 (697)
Q Consensus       646 ~~e~C~ICLEefe~ge~V~-~LpCGH~FH~~CI~qWL~-----qknsCPICRk~LLp  696 (697)
                      ....|.||.+.+..++.++ .-.|+..||..|+..-..     .+-.||.|+..-.|
T Consensus         5 ~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~~~p   61 (64)
T d1we9a_           5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGP   61 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTCS
T ss_pred             CCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCcCCC
Confidence            4568999999887766544 337999999999964221     23469999875544

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.65  E-value=0.4  Score=39.64  Aligned_cols=38  Identities=26%  Similarity=0.572  Sum_probs=29.7

Q ss_pred             CCCCCCCcccccccccCCCCceEEeCCCChhcHHHHHHH
Q 005412          642 EIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQW  680 (697)
Q Consensus       642 ~~~~~~e~C~ICLEefe~ge~V~~LpCGH~FH~~CI~qW  680 (697)
                      +....++.|.|| +.|...+....-.|+-+||..|+++-
T Consensus        10 e~v~~D~mC~vC-~v~t~~~l~pCRvCtRv~H~~CL~r~   47 (89)
T d1wila_          10 EPVVNDEMCDVC-EVWTAESLFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCCCSCCCTTT-CCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred             cCCCcCcccccc-CcccccceecceeecchhhHHHHHHh
Confidence            345677899999 77877754444468999999999996

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.50  E-value=1.1  Score=35.84  Aligned_cols=48  Identities=21%  Similarity=0.403  Sum_probs=32.5

Q ss_pred             CcccccccccCCCCceEEe-CCCChhcHHHHHH--HH-h--cCCCCcCCCCCcC
Q 005412          648 EPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQ--WL-M--QKNLCPICKTTGL  695 (697)
Q Consensus       648 e~C~ICLEefe~ge~V~~L-pCGH~FH~~CI~q--WL-~--qknsCPICRk~LL  695 (697)
                      ..|.||...+...+.++.- .|.-.||..|+..  .. .  .+-.||.|+...-
T Consensus        12 pv~CiC~~~~~~~~~mI~Cd~C~~W~H~~C~g~~~~~~~~~~~~~C~~C~~~~g   65 (79)
T d1wepa_          12 PVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG   65 (79)
T ss_dssp             CCCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred             CeEeECCCccCCCCcEEECCCCCCcEeccccCcchhcCCCCCEEECccCcCCcC
Confidence            4566999877665544433 6999999999952  22 1  2357999987543