Citrus Sinensis ID: 005473

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-----
Protein Sequence
MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDLRPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccEEcccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHccccccccEEccccccHHHHHHHcccccccccccccccccccccccccccccEEEcccccccccccccccccccccHHHcccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccEEEcccccEEEEEcccccEEEEEccccccccEEcEEccccEEEEccccccccEEEEcccccccccccccccEEccccccccEEccccccccEEEEEEccccEEEEEcccccccccccccccccccEEEEEEcccccccccccEEEEEcccccccccccccccccccEEEEEEcccccEEEEccccccEEEEEcccccEEcccccccccEEEEEEcccccEEEEccccccEEEcccccccccccccccccccEEEEEEccccccEEEEccccccEEEEEcccccEEEEEEcccccEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccHcccccHHHHHHcccccccccccEEEcccccHHHHHHcccccccccccccccccccccHHHccccccEEEccccccccccccccccccccHHHHccccHcccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccHHcccccccccccHHHccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccEEEEEcccccEEEEcccccccccccEEEEcccccEEEEEEcccccEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEEccc
Coil and Loop (DISEMBL)
msqnnweadKMLDVYIYDYLLKRKLHASAKAFQtegkvstdpvaidapggfLFEWWSVFWDIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTqhlndtgddlrpgfAKAFTTKMYEDRlkklpfqrdslddatikprlsdnmtqlldpNHATLLKAaaigsqpsgqtlhgthgvsqqvqsrsqqpplstqevktemnptmnpraagsegsligvhgsnqgagnvtlkgwpltgldqfRSGLLQQQKSLTQPYNQLQLQQLMLQAQQnlaspsandlesRKLRMLHnsrnmglardgssnsvgDLVSTVGSAmqiispglprgdndLLIKIQQQQQQLqhyshhplssqqsqnsnpllQQQDkilaggsmtmdgsmsntfqgndqasknqigrkrkqavsssgpanssgtantpgptpsspsspsthtpgdvisrptlqhngassksllmfgsdgmgsltsapnqltdmdrfvddgslddnvesflspddadprdrvgrsaevgkgftftefqlipastskveschfspdgkllatgghdkkAVLWCTESFTVKSTLEEHTQWitdvrfspslsrlatssadrtvrvwdtenpdyslrtftghsttvmsldfhpskedllcscdnnseirywsinngscagVFKNFFESFVSVRVVQPR
Flexible Loop (DISEMBL)
msqnnweadkMLDVYIYDYLLKRKLHASAKAFqtegkvstdpvAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDstqhlndtgddlrpGFAKAFTTKMYedrlkklpfqrdslddatikPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHGVSQqvqsrsqqpplstQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRnmglardgssnsVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQavsssgpanssgtantpgptpsspsspSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVEsflspddadprdrVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTqwitdvrfspslsrlatssadrtvrvwdtenpdyslrtftGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVsvrvvqpr
Low Complexity Region (SEG)
MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAASYIESQVIKAREqqqqqqqqhqkpqqhqqmqvqqlllqrhaqqqqqqqrrDSTQHLNDTGDDLRPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHGvsqqvqsrsqqPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYnqlqlqqlmlqaqqnlaSPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIqqqqqqlqhyshhplssqqsqnsnpllqqqDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANssgtantpgptpsspsspsthtpgDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR
Disordered region (IsUnstruct)
*******ADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIART**********************************************************************************************************************************************************************************************AGNVTLKGWPLTGLDQFRSGLL************************************************************************************LI******************************************************************************************************************************************************************************GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVV***
Disordered Region (DISOPRED)
******E*DKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTN*********************************************************************************************************************************************************************************************AGNVTLKGWPLTGLDQ*********************************************RMLHN********************************************************************************GSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP*
Disordered Region (DISEMBL)
MSQNNWEADKMLDVYIYDYLLKRKLHASAKA********TDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAASYIESQ*************************************************LNDTGDDLRPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPS*******************************MNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKI*************************LLQQQDKILAGGSMTMDGSMSNTFQG***********************************************GDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR
Disordered Region (DISPRO)
****NWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQ***************A**********************RPG*********YEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAI****S*Q*****HGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYNQLQLQQLMLQAQQNLAS*SANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQ******************************************************************************************TPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDLRPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	695	2.2.26 [Sep-21-2011]
Q9FUY2	931	Transcriptional corepress	yes	no	0.794	0.592	0.565	1e-173
Q8YRI1	1526	Uncharacterized WD repeat	yes	no	0.207	0.094	0.369	1e-17
Q15542	800	Transcription initiation	yes	no	0.208	0.181	0.333	1e-15
Q8C092	801	Transcription initiation	yes	no	0.208	0.181	0.326	2e-15
Q8W1K8	370	Protein Mut11 OS=Chlamydo	N/A	no	0.172	0.324	0.347	6e-14
Q8YV57	1683	Uncharacterized WD repeat	no	no	0.178	0.073	0.333	8e-14
P0CS42	433	Nuclear distribution prot	yes	no	0.174	0.279	0.352	1e-13
P0CS43	433	Nuclear distribution prot	N/A	no	0.174	0.279	0.352	1e-13
Q00808	1356	Vegetative incompatibilit	no	no	0.166	0.085	0.355	3e-13
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.185	0.102	0.312	4e-13

>sp|Q9FUY2|LEUNG_ARATH Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2

 Score =  608 bits (1568), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 337/596 (56%), Positives = 425/596 (71%), Gaps = 44/596 (7%)

Query: 125 RRDSTQHLNDTGDDL-----------RPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKP 173
           RRD +   N + + L            PG   +  +K YE+R+K +P QR+SLD+A +K 
Sbjct: 185 RRDGSHLANGSANGLVGNNSEPVMRQNPGSGSSLASKAYEERVK-MPTQRESLDEAAMK- 242

Query: 174 RLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHG-VSQQVQSRSQQPPLSTQEVKTE 232
           R  DN+ QLLDP+HA++LK+AA   QP+GQ LH T G +S QVQ+R+QQ P S  ++K+E
Sbjct: 243 RFGDNVGQLLDPSHASILKSAAASGQPAGQVLHSTSGGMSPQVQTRNQQLPGSAVDIKSE 302

Query: 233 MNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSL--TQPYN 290
           +NP + PR A  EGSLIG+ GSNQG+ N+TLKGWPLTG DQ RSGLLQQQK    +Q ++
Sbjct: 303 INPVLTPRTAVPEGSLIGIPGSNQGSNNLTLKGWPLTGFDQLRSGLLQQQKPFMQSQSFH 362

Query: 291 QLQL------QQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVST 344
           QL +      QQLML AQQNL S S ++ E+R+L+ML N+R+M L +DG  +SVGD++  
Sbjct: 363 QLNMLTPQHQQQLML-AQQNLNSQSVSE-ENRRLKMLLNNRSMTLGKDGLGSSVGDVLPN 420

Query: 345 VGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSHH-------------------PLSSQ 385
           VGS++Q     LPRGD D+L+K++    Q Q  +                      L++ 
Sbjct: 421 VGSSLQPGGSLLPRGDTDMLLKLKMALLQQQQQNQQQGGGNPPQPQPQPQPLNQLALTNP 480

Query: 386 QSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSG 445
           Q Q+SN  + QQ+K+  GGS+TMDGS+SN+F+GN+Q  KNQ GRKRKQ VSSSGPANSSG
Sbjct: 481 QPQSSNHSIHQQEKLGGGGSITMDGSISNSFRGNEQVLKNQSGRKRKQPVSSSGPANSSG 540

Query: 446 TANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTD 504
           TANT GP+PSS  S  + HTPGDVIS P L H+G SSKS++MFG++G G+LTS  NQL D
Sbjct: 541 TANTAGPSPSSAPSTPSTHTPGDVISMPNLPHSGGSSKSMMMFGTEGTGTLTSPSNQLAD 600

Query: 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS 564
           MDRFV+DGSLDDNVESFLS +D D RD V R  +V KGFTFTE   + AST+KV  CHFS
Sbjct: 601 MDRFVEDGSLDDNVESFLSQEDGDQRDAVTRCMDVSKGFTFTEVNSVRASTTKVTCCHFS 660

Query: 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
            DGK+LA+ GHDKKAVLW T++   K+TLEEHT  ITD+RFSPS  RLATSS D+TVRVW
Sbjct: 661 SDGKMLASAGHDKKAVLWYTDTMKPKTTLEEHTAMITDIRFSPSQLRLATSSFDKTVRVW 720

Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
           D +N  YSLRTF GHS+ V SLDFHP K+DL+CSCDN++EIRYWSINNGSC  V+K
Sbjct: 721 DADNKGYSLRTFMGHSSMVTSLDFHPIKDDLICSCDNDNEIRYWSINNGSCTRVYK 776

Transcription repressor subunit of the SEU-LUG transcriptional corepressor of the C class floral homeotic gene AGAMOUS during the early stages of floral meristem development. Is part of the A class cadastral complex that define the boundaries between the A and C class homeotic genes expression and function. Interacts together with APETALA2 and SEUSS to repress AGAMOUS expression. Also plays a role in ovule and pollen development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 92.0 bits (227), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 77/149 (51%), Gaps = 5/149 (3%)

Query: 531  DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK 590
            D+  R  E+        FQ     TS V S  F+PDG +LA+G  DK   LW   S    
Sbjct: 1221 DQTVRLWEINSSKCLCTFQ---GHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCL 1277

Query: 591  STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP 650
             T + HT W+  V F+P  S LA+ S D+TVR+W+  +    L TF GH++ V S+ F P
Sbjct: 1278 HTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSK-CLHTFQGHTSWVSSVTFSP 1336

Query: 651  SKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
                +L S  ++  +R WSI++G C   F
Sbjct: 1337 DGT-MLASGSDDQTVRLWSISSGECLYTF 1364

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q15542|TAF5_HUMAN Transcription initiation factor TFIID subunit 5 OS=Homo sapiens GN=TAF5 PE=1 SV=3

 Score = 85.9 bits (211), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 69/147 (46%), Gaps = 2/147 (1%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
           TFT           V    FSP G    +GGHD+ A LW T+ +        H   +   
Sbjct: 574 TFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCT 633

Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
           RF P+ + +AT SADRTVR+WD  N +  +R FTGH   + SL F P+    L +   + 
Sbjct: 634 RFHPNSNYVATGSADRTVRLWDVLNGN-CVRIFTGHKGPIHSLTFSPNGR-FLATGATDG 691

Query: 664 EIRYWSINNGSCAGVFKNFFESFVSVR 690
            +  W I +G   G  K   ++  S+R
Sbjct: 692 RVLLWDIGHGLMVGELKGHTDTVCSLR 718

TAFs are components of the transcription factor IID (TFIID) complex, PCAF histone acetylase complex and TBP-free TAFII complex (TFTC). TAFs components-TIIFD are essential for mediating regulation of RNA polymerase transcription. TAF5/TAFII100 interacts strongly with the histone H4-related TAF6/TAFII80 and the histone H3-related TAF9/TAFII31, as well as a stable complex comprised of both TAF5/TAFII80 and TAF6/TAFII31. Apparently weaker interactions of TAF5/TAFII100 with TBP, TAF1/TAFII250, TAF11/TAFII28, and TAF12/TAFII20, but not TAF7/TAFII55, also have been observed.

Homo sapiens (taxid: 9606)

>sp|Q8C092|TAF5_MOUSE Transcription initiation factor TFIID subunit 5 OS=Mus musculus GN=Taf5 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 69/147 (46%), Gaps = 2/147 (1%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
           TFT           V    FSP G    +GGHD+ A LW T+ +        H   +   
Sbjct: 575 TFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCT 634

Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
           R+ P+ + +AT SADRTVR+WD  N +  +R FTGH   + SL F P+    L +   + 
Sbjct: 635 RYHPNSNYVATGSADRTVRLWDVLNGN-CVRIFTGHKGPIHSLTFSPNGR-FLATGATDG 692

Query: 664 EIRYWSINNGSCAGVFKNFFESFVSVR 690
            +  W I +G   G  K   ++  S+R
Sbjct: 693 RVLLWDIGHGLMVGELKGHTDTVCSLR 719

TAFs are components of the transcription factor IID (TFIID) complex, PCAF histone acetylase complex and TBP-free TAFII complex (TFTC). TAFs components-TIIFD are essential for mediating regulation of RNA polymerase transcription. TAF5/TAFII100 interacts strongly with the histone H4-related TAF6/TAFII80 and the histone H3-related TAF9/TAFII31, as well as a stable complex comprised of both TAF5/TAFII80 and TAF6/TAFII31. Apparently weaker interactions of TAF5/TAFII100 with TBP, TAF1/TAFII250, TAF11/TAFII28, and TAF12/TAFII20, but not TAF7/TAFII55, also have been observed.

Mus musculus (taxid: 10090)

>sp|Q8W1K8|MUT11_CHLRE Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut11 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 1/121 (0%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V +  FSPDG LLA+G  D+   LW   +    +TL  H+  ++DV ++P+   LAT
Sbjct: 40  TKAVAAVKFSPDGSLLASGSADRTVALWDAATGARVNTLAGHSCGVSDVAWNPNGRYLAT 99

Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           ++ D ++++WD E     LRT TGH+  V   +F  +   LL S   +  +R W + +G 
Sbjct: 100 AADDHSLKLWDAET-GACLRTLTGHTNYVFCCNFDGAAGHLLASGSFDETLRLWDVRSGR 158

Query: 675 C 675
           C
Sbjct: 159 C 159

Part of a complex involved in 'Lys-4' histone H3 methylation.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score = 79.7 bits (195), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 2/126 (1%)

Query: 548  FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
            F+ +      V S  FSPDG+ +A+GG DK   LW T   T+  T+  H Q + +V FSP
Sbjct: 1106 FRTLNGHEDAVYSVSFSPDGQTIASGGSDKTIKLWQTSDGTLLKTITGHEQTVNNVYFSP 1165

Query: 608  SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
                LA++S+D ++++WDT +    L T TGHS  V+++ F P  + +    ++ + ++ 
Sbjct: 1166 DGKNLASASSDHSIKLWDTTSGQL-LMTLTGHSAGVITVRFSPDGQTIAAGSEDKT-VKL 1223

Query: 668  WSINNG 673
            W   +G
Sbjct: 1224 WHRQDG 1229

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|P0CS42|LIS1_CRYNJ Nuclear distribution protein PAC1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=PAC1 PE=3 SV=1

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 1/122 (0%)

Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
           F P   LLA+   D    LW  E+  ++ TL+ HT+ + DV F P    +AT S+D T++
Sbjct: 113 FHPTWTLLASASEDATVKLWDWEAGDMERTLKGHTKAVMDVDFDPRGGLMATCSSDLTLK 172

Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF 682
           +WDT N   +++T  GH  +V S+ F P  E L+ S   +  IR W +++G C   F   
Sbjct: 173 LWDTANQYTNVKTLHGHDHSVSSVRFMPDGETLV-SASRDKTIRVWQVSSGYCIKTFSGH 231

Query: 683 FE 684
            E
Sbjct: 232 AE 233

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. Plays a central role in positioning the mitotic spindle at the bud neck during cell division. Targets cytoplasmic dynein to microtubule plus ends, thereby promoting dynein-mediated microtubule sliding along the bud cortex and consequently the movement of the mitotic spindle to the bud neck.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CS43|LIS1_CRYNB Nuclear distribution protein PAC1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=PAC1 PE=3 SV=1

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 1/122 (0%)

Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
           F P   LLA+   D    LW  E+  ++ TL+ HT+ + DV F P    +AT S+D T++
Sbjct: 113 FHPTWTLLASASEDATVKLWDWEAGDMERTLKGHTKAVMDVDFDPRGGLMATCSSDLTLK 172

Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF 682
           +WDT N   +++T  GH  +V S+ F P  E L+ S   +  IR W +++G C   F   
Sbjct: 173 LWDTANQYTNVKTLHGHDHSVSSVRFMPDGETLV-SASRDKTIRVWQVSSGYCIKTFSGH 231

Query: 683 FE 684
            E
Sbjct: 232 AE 233

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. Plays a central role in positioning the mitotic spindle at the bud neck during cell division. Targets cytoplasmic dynein to microtubule plus ends, thereby promoting dynein-mediated microtubule sliding along the bud cortex and consequently the movement of the mitotic spindle to the bud neck.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 77.4 bits (189), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 65/118 (55%), Gaps = 2/118 (1%)

Query: 558  VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
            V S  FSPDG+ +A+G  D    +W   S T   TLE H  W+  V FSP   R+A+ S+
Sbjct: 1138 VHSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVQSVAFSPDGQRVASGSS 1197

Query: 618  DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675
            D+T+++WDT +   + +T  GH   V S+ F P  + +     +N+ I+ W   +G+C
Sbjct: 1198 DKTIKIWDTASGTCT-QTLEGHGGWVQSVAFSPDGQRVASGSSDNT-IKIWDTASGTC 1253

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 77.0 bits (188), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 69/131 (52%), Gaps = 2/131 (1%)

Query: 550  LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 609
            ++   +++V S  FSP+G+++AT   D+   +W  +      TL  HT W+ D+ FSP  
Sbjct: 1099 ILRGHSNRVYSAIFSPNGEIIATCSTDQTVKIWDWQQGKCLKTLTGHTNWVFDIAFSPDG 1158

Query: 610  SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
              LA++S D+TVR+WD  N         GH+  V S+ F P  E ++ S   +  +R W+
Sbjct: 1159 KILASASHDQTVRIWDV-NTGKCHHICIGHTHLVSSVAFSPDGE-VVASGSQDQTVRIWN 1216

Query: 670  INNGSCAGVFK 680
            +  G C  + +
Sbjct: 1217 VKTGECLQILR 1227

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	695
297738887	871	unnamed protein product [Vitis vinifera]	0.972	0.776	0.693	0.0
225445366	878	PREDICTED: transcriptional corepressor L	0.972	0.769	0.686	0.0
359484630	883	PREDICTED: transcriptional corepressor L	0.968	0.762	0.678	0.0
280967728	905	LisH-SSDP-WD40 [Malus x domestica]	0.958	0.735	0.689	0.0
147784075	946	hypothetical protein VITISV_002025 [Viti	0.968	0.711	0.655	0.0
449441952	891	PREDICTED: transcriptional corepressor L	0.969	0.756	0.636	0.0
449441950	900	PREDICTED: transcriptional corepressor L	0.969	0.748	0.628	0.0
449522548	900	PREDICTED: transcriptional corepressor L	0.969	0.748	0.628	0.0
356515484	892	PREDICTED: transcriptional corepressor L	0.974	0.758	0.631	0.0
357466351	941	NAD(P)H-quinone oxidoreductase subunit [	0.974	0.719	0.580	0.0

>gi|297738887|emb|CBI28132.3| unnamed protein product [Vitis vinifera]

 Score =  858 bits (2217), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/720 (69%), Positives = 558/720 (77%), Gaps = 44/720 (6%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DY LKRKLHASAKAFQ E KVST+PVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYFLKRKLHASAKAFQAEAKVSTEPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQ 120
           DIFIARTNEKHSE+AASYIE+Q+IKARE QQQQQQQ Q+ QQ QQ Q  Q   Q+  QQ 
Sbjct: 61  DIFIARTNEKHSEAAASYIETQLIKARELQQQQQQQQQQQQQQQQHQKPQQQQQQQQQQM 120

Query: 121 QQQQRR----------------DSTQHLNDTGDDL---------RPGFAKAFTTKMYEDR 155
           Q QQ                  D TQ LN +G+ L          P  A    TKMYE+R
Sbjct: 121 QMQQLLLQRHVQQQQQQQQQRRDGTQILNGSGNGLVSNDALMRQNPATANTLATKMYEER 180

Query: 156 LKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGT-HGVS-- 212
           LK LP QRD LDDA +K R  DNM QLL+PNHA+LLK+AA+  QP GQTLHG   G+S  
Sbjct: 181 LK-LPLQRDPLDDAAMKQRFGDNMGQLLEPNHASLLKSAAVSGQP-GQTLHGAPGGISGN 238

Query: 213 -QQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGL 271
            QQVQSR+QQ  +S+ ++K+EMNP MNPRAAG EGSLIGVHGSNQG  N+TLKGWPLTGL
Sbjct: 239 LQQVQSRNQQLQVSS-DIKSEMNPMMNPRAAGPEGSLIGVHGSNQGGNNLTLKGWPLTGL 297

Query: 272 DQFRSGLLQQQKSLTQP----YNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNM 327
           DQ RSG+LQQ KSL QP    +     QQL+LQAQQNLASPSA+DLE RKLRML NSRN 
Sbjct: 298 DQLRSGILQQHKSLIQPSQPFHQLQLQQQLLLQAQQNLASPSASDLECRKLRMLLNSRN- 356

Query: 328 GLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSH-----HPL 382
            L +DG  N+VGD+V+ VGS MQ+  P LPRGD D+LIK+QQQQ Q  +        HPL
Sbjct: 357 SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIKLQQQQLQNSNQQQQQYLQHPL 416

Query: 383 SSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPA 441
           SSQQSQ+SN  LL QQDK++  GS+ +DGSMSNTF+GNDQ SK QIGRKRKQ VSSSGPA
Sbjct: 417 SSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSNTFRGNDQTSKGQIGRKRKQPVSSSGPA 476

Query: 442 NSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPN 500
           NSSGT NT GP+PSS  S  + HTPGDVIS PTL HNG SSKSLLM+GSDGMG+ TSAPN
Sbjct: 477 NSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPTLSHNGGSSKSLLMYGSDGMGTHTSAPN 536

Query: 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560
           QL D+DRFVDDGSLDDNVESFL+ DD DPRD VGRS +  KGF+F+E + I ASTSKVE 
Sbjct: 537 QLADVDRFVDDGSLDDNVESFLAHDDGDPRDTVGRSVDGSKGFSFSEVRCITASTSKVEC 596

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
           CHFS DGKLLATGG DKKAVLWCTESFT KS LEEH+Q ITD+RFSPS+ RLATSSAD+T
Sbjct: 597 CHFSSDGKLLATGGQDKKAVLWCTESFTAKSRLEEHSQMITDIRFSPSMPRLATSSADKT 656

Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
           VRVWD +NP YSLRTFTGHST V SLDFHP+K+DL+CSCD N EIRYWSI NGSC  VFK
Sbjct: 657 VRVWDVDNPVYSLRTFTGHSTNVTSLDFHPNKDDLICSCDGNGEIRYWSIPNGSCTRVFK 716

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445366|ref|XP_002284908.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Vitis vinifera]

 Score =  854 bits (2206), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/727 (68%), Positives = 557/727 (76%), Gaps = 51/727 (7%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DY LKRKLHASAKAFQ E KVST+PVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYFLKRKLHASAKAFQAEAKVSTEPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQ 120
           DIFIARTNEKHSE+AASYIE+Q+IKARE QQQQQQQ Q+ QQ QQ Q  Q   Q+  QQ 
Sbjct: 61  DIFIARTNEKHSEAAASYIETQLIKARELQQQQQQQQQQQQQQQQHQKPQQQQQQQQQQM 120

Query: 121 QQQQRR----------------DSTQHLNDTGDDL---------RPGFAKAFTTKMYEDR 155
           Q QQ                  D TQ LN +G+ L          P  A    TKMYE+R
Sbjct: 121 QMQQLLLQRHVQQQQQQQQQRRDGTQILNGSGNGLVSNDALMRQNPATANTLATKMYEER 180

Query: 156 LKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGT-HGVS-- 212
           LK LP QRD LDDA +K R  DNM QLL+PNHA+LLK+AA+  QP GQTLHG   G+S  
Sbjct: 181 LK-LPLQRDPLDDAAMK-RFGDNMGQLLEPNHASLLKSAAVSGQP-GQTLHGAPGGISGN 237

Query: 213 -QQVQSRSQQPPLSTQ-EVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTG 270
            QQVQSR+QQ  +S+  ++K+EMNP MNPRAAG EGSLIGVHGSNQG  N+TLKGWPLTG
Sbjct: 238 LQQVQSRNQQLQVSSACDIKSEMNPMMNPRAAGPEGSLIGVHGSNQGGNNLTLKGWPLTG 297

Query: 271 LDQFRSGLLQQQKSLTQP----YNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRN 326
           LDQ RSG+LQQ KSL QP    +     QQL+LQAQQNLASPSA+DLE RKLRML NSRN
Sbjct: 298 LDQLRSGILQQHKSLIQPSQPFHQLQLQQQLLLQAQQNLASPSASDLECRKLRMLLNSRN 357

Query: 327 MGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIK-----------IQQQQQQLQ 375
             L +DG  N+VGD+V+ VGS MQ+  P LPRGD D+LIK           +Q   QQ Q
Sbjct: 358 -SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIKRLNVSQLQQQQLQNSNQQQQ 416

Query: 376 HYSHHPLSSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQA 434
            Y  HPLSSQQSQ+SN  LL QQDK++  GS+ +DGSMSNTF+GNDQ SK QIGRKRKQ 
Sbjct: 417 QYLQHPLSSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSNTFRGNDQTSKGQIGRKRKQP 476

Query: 435 VSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMG 493
           VSSSGPANSSGT NT GP+PSS  S  + HTPGDVIS PTL HNG SSKSLLM+GSDGMG
Sbjct: 477 VSSSGPANSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPTLSHNGGSSKSLLMYGSDGMG 536

Query: 494 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553
           + TSAPNQL D+DRFVDDGSLDDNVESFL+ DD DPRD VGRS +  KGF+F+E + I A
Sbjct: 537 THTSAPNQLADVDRFVDDGSLDDNVESFLAHDDGDPRDTVGRSVDGSKGFSFSEVRCITA 596

Query: 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 613
           STSKVE CHFS DGKLLATGG DKKAVLWCTESFT KS LEEH+Q ITD+RFSPS+ RLA
Sbjct: 597 STSKVECCHFSSDGKLLATGGQDKKAVLWCTESFTAKSRLEEHSQMITDIRFSPSMPRLA 656

Query: 614 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673
           TSSAD+TVRVWD +NP YSLRTFTGHST V SLDFHP+K+DL+CSCD N EIRYWSI NG
Sbjct: 657 TSSADKTVRVWDVDNPVYSLRTFTGHSTNVTSLDFHPNKDDLICSCDGNGEIRYWSIPNG 716

Query: 674 SCAGVFK 680
           SC  VFK
Sbjct: 717 SCTRVFK 723

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484630|ref|XP_003633134.1| PREDICTED: transcriptional corepressor LEUNIG-like [Vitis vinifera]

 Score =  850 bits (2195), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/735 (67%), Positives = 555/735 (75%), Gaps = 62/735 (8%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DY LKRKLHASAKAFQ E KVST+PVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYFLKRKLHASAKAFQAEAKVSTEPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQ 120
           DIFIARTNEKHSE+AASYIE+Q+IKARE QQQQQQQ Q+ QQ QQ Q  Q   Q+  QQ 
Sbjct: 61  DIFIARTNEKHSEAAASYIETQLIKARELQQQQQQQQQQQQQQQQHQKPQQQQQQQQQQM 120

Query: 121 QQQQRR----------------DSTQHLNDTGDDL---------RPGFAKAFTTKMYEDR 155
           Q QQ                  D TQ LN +G+ L          P  A    TKMYE+R
Sbjct: 121 QMQQLLLQRHVQQQQQQQQQRRDGTQILNGSGNGLVSNDALMRQNPATANTLATKMYEER 180

Query: 156 LKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGT-HGVS-- 212
           LK LP QRD LDDA +K R  DNM QLL+PNHA+LLK+AA+  QP GQTLHG   G+S  
Sbjct: 181 LK-LPLQRDPLDDAAMKQRFGDNMGQLLEPNHASLLKSAAVSGQP-GQTLHGAPGGISGN 238

Query: 213 -QQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGL 271
            QQVQSR+QQ     Q++K+EMNP MNPRAAG EGSLIGVHGSNQG  N+TLKGWPLTGL
Sbjct: 239 LQQVQSRNQQ----LQDIKSEMNPMMNPRAAGPEGSLIGVHGSNQGGNNLTLKGWPLTGL 294

Query: 272 DQFRSGLLQQQKSLTQP----YNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNM 327
           DQ RSG+LQQ KSL QP    +     QQL+LQAQQNLASPSA+DLE RKLRML NSRN 
Sbjct: 295 DQLRSGILQQHKSLIQPSQPFHQLQLQQQLLLQAQQNLASPSASDLECRKLRMLLNSRN- 353

Query: 328 GLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIK-----------IQQQQQQLQH 376
            L +DG  N+VGD+V+ VGS MQ+  P LPRGD D+LIK           +Q   QQ Q 
Sbjct: 354 SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIKRLNVSQLQQQQLQNSNQQQQQ 413

Query: 377 YSHHPLSSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAV 435
           Y  HPLSSQQSQ+SN  LL QQDK++  GS+ +DGSMSNTF+GNDQ SK QIGRKRKQ V
Sbjct: 414 YLQHPLSSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSNTFRGNDQTSKGQIGRKRKQPV 473

Query: 436 SSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGS 494
           SSSGPANSSGT NT GP+PSS  S  + HTPGDVIS PTL HNG SSKSLLM+GSDGMG+
Sbjct: 474 SSSGPANSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPTLSHNGGSSKSLLMYGSDGMGT 533

Query: 495 LTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545
            TSAPNQL          D+DRFVDDGSLDDNVESFL+ DD DPRD VGRS +  KGF+F
Sbjct: 534 HTSAPNQLWNNRYNNLQADVDRFVDDGSLDDNVESFLAHDDGDPRDTVGRSVDGSKGFSF 593

Query: 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF 605
           +E + I ASTSKVE CHFS DGKLLATGG DKKAVLWCTESFT KS LEEH+Q ITD+RF
Sbjct: 594 SEVRCITASTSKVECCHFSSDGKLLATGGQDKKAVLWCTESFTAKSRLEEHSQMITDIRF 653

Query: 606 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665
           SPS+ RLATSSAD+TVRVWD +NP YSLRTFTGHST V SLDFHP+K+DL+CSCD N EI
Sbjct: 654 SPSMPRLATSSADKTVRVWDVDNPVYSLRTFTGHSTNVTSLDFHPNKDDLICSCDGNGEI 713

Query: 666 RYWSINNGSCAGVFK 680
           RYWSI NGSC  VFK
Sbjct: 714 RYWSIPNGSCTRVFK 728

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|280967728|gb|ACZ98534.1| LisH-SSDP-WD40 [Malus x domestica]

 Score =  847 bits (2188), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/705 (68%), Positives = 555/705 (78%), Gaps = 39/705 (5%)

Query: 9   DKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTN 68
           D  LDVYIYDYL+KRKLHASAKAFQ EGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTN
Sbjct: 4   DHRLDVYIYDYLMKRKLHASAKAFQDEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTN 63

Query: 69  EKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRR-- 126
           EKHSE+AASYIE+QVIKAREQQQQQ+ Q Q   Q QQ+ +Q+   Q+  Q+QQQQQ++  
Sbjct: 64  EKHSEAAASYIETQVIKAREQQQQQKPQLQDQMQMQQLLLQRHAQQQQQQRQQQQQQQQP 123

Query: 127 -----------DSTQHLNDTGDD--LR--PGFAKAFTTKMYEDRLKKLPFQRDSLDDATI 171
                      D TQ  N T +D  LR  P  A +  TKMYE+RLK LP QRD++DDA I
Sbjct: 124 QQQQQQQQQRRDGTQLHNGTANDSLLRQNPATANSMATKMYEERLK-LPPQRDAMDDAAI 182

Query: 172 KPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHGVS----QQVQSRSQQPPLSTQ 227
           K RL DNM+QLLDPNH +++KAA  G QP GQ LHGT G      QQ  SRSQQ P S+Q
Sbjct: 183 KQRLGDNMSQLLDPNHVSMMKAATAGGQPPGQMLHGTPGGVLGNLQQPHSRSQQLPGSSQ 242

Query: 228 EVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQ 287
           ++K+E+   MNPRA   EGSLIG HGSNQG  N+TLKGWPLTG D+ RSG+LQQQ SL Q
Sbjct: 243 DIKSEV---MNPRAVAPEGSLIGTHGSNQGNNNLTLKGWPLTGFDRLRSGILQQQNSLMQ 299

Query: 288 ---PYNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVST 344
              PYNQL  QQ ++ AQQNLASPS+NDL++R+++ML N+RNM L +DG  +SV   V  
Sbjct: 300 SPQPYNQLLQQQQLMLAQQNLASPSSNDLDNRRMKMLLNNRNMVLGKDGQLSSVD--VPN 357

Query: 345 VGSAMQIISPGLPRGDNDLLIK---------IQQQQQQLQHYSHHPLSSQQSQNSNPLLQ 395
           VGS  Q+  P LPRGD D+L+K         +Q   QQ Q YS HPLS Q SQNS+  LQ
Sbjct: 358 VGSPAQVGCPVLPRGDADMLMKPTYQLQQQQMQSNNQQQQPYSQHPLSGQHSQNSSQHLQ 417

Query: 396 QQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPS 455
           Q +KI+  GSM  DGSM NT QGNDQASKNQ+GRKRKQ VSSSGPANSSGT NT GP+PS
Sbjct: 418 QHEKIMGSGSMAPDGSMPNTLQGNDQASKNQLGRKRKQPVSSSGPANSSGTVNTTGPSPS 477

Query: 456 SPSSPSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLD 515
           SPS+PSTHT GDV+S PTL HNG SSKSLLMFGSDG+GS  SAPN+LTD+DRFVDDGSL+
Sbjct: 478 SPSTPSTHTAGDVMSMPTLPHNGGSSKSLLMFGSDGLGSRASAPNKLTDVDRFVDDGSLE 537

Query: 516 DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH 575
           DNVESFLS DDADPR RV R ++V KGF+F E QLIPAST+KVE CH S DGK LATGGH
Sbjct: 538 DNVESFLSHDDADPRGRVVRCSDVSKGFSFKEVQLIPASTNKVECCHLSSDGKSLATGGH 597

Query: 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635
           D+KAVLWCTE+++VKSTL+EH+QWITDVRFSPS+SRLATSSAD+TVRVWD +NP YSLRT
Sbjct: 598 DRKAVLWCTETYSVKSTLDEHSQWITDVRFSPSMSRLATSSADKTVRVWDADNPGYSLRT 657

Query: 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
           FTGHS+TVMS+DFHPSKED LCSCDNNSEIRYWSI NGSCAGVFK
Sbjct: 658 FTGHSSTVMSVDFHPSKEDFLCSCDNNSEIRYWSIKNGSCAGVFK 702

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147784075|emb|CAN76829.1| hypothetical protein VITISV_002025 [Vitis vinifera]

 Score =  835 bits (2157), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/761 (65%), Positives = 557/761 (73%), Gaps = 88/761 (11%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DY LKRKLHASAKAFQ E KVST+PVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYFLKRKLHASAKAFQAEAKVSTEPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIE-------------------SQVIKAREQQQQQQQQHQKPQ 101
           DIFIARTNEKHSE+AASYIE                   +Q+IKARE QQQQQQQ Q+ Q
Sbjct: 61  DIFIARTNEKHSEAAASYIELFLEKFFNNLTVKSMLKCQTQLIKARELQQQQQQQQQQQQ 120

Query: 102 QHQQMQVQQLLLQRHAQQQQQQQRR------------------DSTQHLNDTGDDL---- 139
           Q QQ Q  Q   Q+  QQQQ Q ++                  D TQ LN +G+ L    
Sbjct: 121 QQQQHQKPQQQQQQQQQQQQMQMQQLLLQRHVQQQQQQQQQRRDGTQILNGSGNGLVSND 180

Query: 140 -----RPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAA 194
                 P  A    TKMYE+RLK LP QRD LDDA +K R  DNM QLL+PNHA+LLK+A
Sbjct: 181 ALMRQNPATANTLATKMYEERLK-LPLQRDPLDDAAMKQRFGDNMGQLLEPNHASLLKSA 239

Query: 195 AIGSQPSGQTLHGT-HGVS---QQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIG 250
           A+  QP GQTLHG   G+S   QQVQSR+QQ     Q++K+EMNP MNPRAAG EGSLIG
Sbjct: 240 AVSGQP-GQTLHGAPGGISGNLQQVQSRNQQ----LQDIKSEMNPMMNPRAAGPEGSLIG 294

Query: 251 VHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQP----YNQLQLQQLMLQAQQNLA 306
           VHGSNQG  N+TLKGWPLTGLDQ RSG+LQQ KSL QP    +     QQL+LQAQQNLA
Sbjct: 295 VHGSNQGGNNLTLKGWPLTGLDQLRSGILQQHKSLIQPSQPFHQLQLQQQLLLQAQQNLA 354

Query: 307 SPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIK 366
           SPSA+DLE RKLRML NSRN  L +DG  N+VGD+V+ VGS MQ+  P LPRGD D+LIK
Sbjct: 355 SPSASDLECRKLRMLLNSRN-SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIK 413

Query: 367 -----------IQQQQQQLQHYSHHPLSSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSN 414
                      +Q   QQ Q Y  HPLSSQQSQ+SN  LL QQDK++  GS+ +DGSMSN
Sbjct: 414 RLNVSQLQQQQLQNSNQQQQQYLQHPLSSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSN 473

Query: 415 TFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPT 473
           TF+GNDQ SK QIGRKRKQ VSSSGPANSSGT NT GP+PSS  S  + HTPGDVIS PT
Sbjct: 474 TFRGNDQTSKGQIGRKRKQPVSSSGPANSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPT 533

Query: 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQL--------------TDMDRFVDDGSLDDNVE 519
           L HNG SSKSLLM+GSDGMG+ TSAPNQL               D+DRFVDDGSLDDNVE
Sbjct: 534 LSHNGGSSKSLLMYGSDGMGTHTSAPNQLHSVGQWNNRYNNLQADVDRFVDDGSLDDNVE 593

Query: 520 SFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA 579
           SFL+ DD DPRD VGRS +  KGF+F+E + I ASTSKVE CHFS DGKLLATGG DKKA
Sbjct: 594 SFLAHDDGDPRDTVGRSVDGSKGFSFSEVRCITASTSKVECCHFSSDGKLLATGGQDKKA 653

Query: 580 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639
           VLWCTESFT KS LEEH+Q ITD+RFSPS+ RLATSSAD+TVRVWD +NP YSLRTFTGH
Sbjct: 654 VLWCTESFTAKSRLEEHSQMITDIRFSPSMPRLATSSADKTVRVWDVDNPVYSLRTFTGH 713

Query: 640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
           ST V SLDFHP+K+DL+CSCD N EIRYWSI NGSC  VFK
Sbjct: 714 STNVTSLDFHPNKDDLICSCDGNGEIRYWSIPNGSCTRVFK 754

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441952|ref|XP_004138746.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Cucumis sativus]

 Score =  823 bits (2126), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/742 (63%), Positives = 541/742 (72%), Gaps = 68/742 (9%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DYL+KR L A+A+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQ--LLLQRHAQ 118
           DIFIARTNEKHS+ AASYIE+Q+IKAREQQQ QQQQ Q+ Q  QQ       LL+QRHAQ
Sbjct: 61  DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQHMQMLLMQRHAQ 120

Query: 119 QQQQQQ------------------------RRDSTQHLNDTGDDL---------RPGFAK 145
           QQQQQQ                        RRD  Q LN + +            PG   
Sbjct: 121 QQQQQQQQQQHQQQQQPQQQQQQSQQQQQQRRDGAQLLNGSSNGFVGNDPLMRQNPGSVN 180

Query: 146 AFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTL 205
           A  TKMYEDRLK LP QRDSLDD  +K R  DN+ QLLDPNHA++LK+AA  SQ SGQ L
Sbjct: 181 ALATKMYEDRLK-LPLQRDSLDDGAMKQRYGDNVGQLLDPNHASILKSAAATSQSSGQVL 239

Query: 206 HG-THGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLK 264
           HG T G+S QVQ RSQQ P ST ++KTE+NP +NPRAAG EGSL+G+ GSN G  N+TLK
Sbjct: 240 HGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLK 299

Query: 265 GWPLTGLDQFRSGLLQQQKSLTQP---YNQLQL------QQLMLQAQQNLASPSANDLES 315
           GWPLTGLDQ RSG+LQQQK   Q    + QLQ+      QQLML AQQNL SPS ND + 
Sbjct: 300 GWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQLML-AQQNLTSPSVND-DG 357

Query: 316 RKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDN-DLLIKIQQ----- 369
           R+LRML N+R   +A+DG SNSVGD+V  VGS +Q  SP LPRGDN D+++KI+      
Sbjct: 358 RRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPRGDNTDMILKIKMAQLQQ 414

Query: 370 ---------QQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGND 420
                    QQQQ Q    H LS+QQSQ+SN  + QQ+KI   GS+TMDGSMSN+F+GND
Sbjct: 415 QQQQQQSSSQQQQQQQLQQHALSNQQSQSSNHNMHQQEKIGGAGSVTMDGSMSNSFRGND 474

Query: 421 QASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGA 479
           Q SKNQ GRKRKQ VSSSGPANSSGTANT GP+PSS  S  + HTPGD IS P L H+G+
Sbjct: 475 QVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGS 534

Query: 480 SSKSL-LMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAE 538
           SSK L +MF SDG G+ TS  NQL DMDR+V+DGSLDDNV+SFLS DD DPRD VGR  +
Sbjct: 535 SSKPLTMMFNSDGTGTFTSPSNQLADMDRYVEDGSLDDNVDSFLSHDDGDPRDPVGRCMD 594

Query: 539 VGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ 598
             KGFTFTE   + ASTSKV SCHFS DGKLL +GGHDKKAVLW TE+   K++LEEH  
Sbjct: 595 GSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVSGGHDKKAVLWYTENLKPKTSLEEHAA 654

Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
            +TDVRFSPS+ RLATSS DRTVRVWD +N  YSLRTFTGHS +VMSLDFHP K+D +CS
Sbjct: 655 IVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYSLRTFTGHSASVMSLDFHPKKDDFICS 714

Query: 659 CDNNSEIRYWSINNGSCAGVFK 680
           CD + EIRYW+I NGSCA VFK
Sbjct: 715 CDGDGEIRYWNITNGSCAAVFK 736

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441950|ref|XP_004138745.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Cucumis sativus]

 Score =  816 bits (2107), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/751 (62%), Positives = 541/751 (72%), Gaps = 77/751 (10%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DYL+KR L A+A+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQ--LLLQRHAQ 118
           DIFIARTNEKHS+ AASYIE+Q+IKAREQQQ QQQQ Q+ Q  QQ       LL+QRHAQ
Sbjct: 61  DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQHMQMLLMQRHAQ 120

Query: 119 QQQQQQ------------------------RRDSTQHLNDTGDDL---------RPGFAK 145
           QQQQQQ                        RRD  Q LN + +            PG   
Sbjct: 121 QQQQQQQQQQHQQQQQPQQQQQQSQQQQQQRRDGAQLLNGSSNGFVGNDPLMRQNPGSVN 180

Query: 146 AFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTL 205
           A  TKMYEDRLK LP QRDSLDD  +K R  DN+ QLLDPNHA++LK+AA  SQ SGQ L
Sbjct: 181 ALATKMYEDRLK-LPLQRDSLDDGAMKQRYGDNVGQLLDPNHASILKSAAATSQSSGQVL 239

Query: 206 HG-THGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLK 264
           HG T G+S QVQ RSQQ P ST ++KTE+NP +NPRAAG EGSL+G+ GSN G  N+TLK
Sbjct: 240 HGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLK 299

Query: 265 GWPLTGLDQFRSGLLQQQKSLTQP---YNQLQL------QQLMLQAQQNLASPSANDLES 315
           GWPLTGLDQ RSG+LQQQK   Q    + QLQ+      QQLML AQQNL SPS ND + 
Sbjct: 300 GWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQLML-AQQNLTSPSVND-DG 357

Query: 316 RKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDN-DLLIKIQQ----- 369
           R+LRML N+R   +A+DG SNSVGD+V  VGS +Q  SP LPRGDN D+++KI+      
Sbjct: 358 RRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPRGDNTDMILKIKMAQLQQ 414

Query: 370 ---------QQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGND 420
                    QQQQ Q    H LS+QQSQ+SN  + QQ+KI   GS+TMDGSMSN+F+GND
Sbjct: 415 QQQQQQSSSQQQQQQQLQQHALSNQQSQSSNHNMHQQEKIGGAGSVTMDGSMSNSFRGND 474

Query: 421 QASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGA 479
           Q SKNQ GRKRKQ VSSSGPANSSGTANT GP+PSS  S  + HTPGD IS P L H+G+
Sbjct: 475 QVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGS 534

Query: 480 SSKSL-LMFGSDGMGSLTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADP 529
           SSK L +MF SDG G+ TS  NQL          DMDR+V+DGSLDDNV+SFLS DD DP
Sbjct: 535 SSKPLTMMFNSDGTGTFTSPSNQLWDDKELELQADMDRYVEDGSLDDNVDSFLSHDDGDP 594

Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV 589
           RD VGR  +  KGFTFTE   + ASTSKV SCHFS DGKLL +GGHDKKAVLW TE+   
Sbjct: 595 RDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVSGGHDKKAVLWYTENLKP 654

Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649
           K++LEEH   +TDVRFSPS+ RLATSS DRTVRVWD +N  YSLRTFTGHS +VMSLDFH
Sbjct: 655 KTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYSLRTFTGHSASVMSLDFH 714

Query: 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
           P K+D +CSCD + EIRYW+I NGSCA VFK
Sbjct: 715 PKKDDFICSCDGDGEIRYWNITNGSCAAVFK 745

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522548|ref|XP_004168288.1| PREDICTED: transcriptional corepressor LEUNIG-like [Cucumis sativus]

 Score =  815 bits (2106), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/751 (62%), Positives = 541/751 (72%), Gaps = 77/751 (10%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DYL+KR L A+A+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQ--LLLQRHAQ 118
           DIFIARTNEKHS+ AASYIE+Q+IKAREQQQ QQQQ Q+ Q  QQ       LL+QRHAQ
Sbjct: 61  DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQHMQMLLMQRHAQ 120

Query: 119 QQQQQQ------------------------RRDSTQHLNDTGDDL---------RPGFAK 145
           QQQQQQ                        RRD  Q LN + +            PG   
Sbjct: 121 QQQQQQQQQQHQQQQQPQQQQQQSQQQQQQRRDGAQLLNGSSNGFVGNDPLMRQNPGSVN 180

Query: 146 AFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTL 205
           A  TKMYEDRLK LP QRDSLDD  +K R  DN+ QLLDPNHA++LK+AA  SQ SGQ L
Sbjct: 181 ALATKMYEDRLK-LPLQRDSLDDGAMKQRYGDNVGQLLDPNHASILKSAAATSQSSGQVL 239

Query: 206 HG-THGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLK 264
           HG T G+S QVQ RSQQ P ST ++KTE+NP +NPRAAG EGSL+G+ GSN G  N+TLK
Sbjct: 240 HGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLK 299

Query: 265 GWPLTGLDQFRSGLLQQQKSLTQP---YNQLQL------QQLMLQAQQNLASPSANDLES 315
           GWPLTGLDQ RSG+LQQQK   Q    + QLQ+      QQLML AQQNL SPS ND + 
Sbjct: 300 GWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQLML-AQQNLTSPSVND-DG 357

Query: 316 RKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDN-DLLIKIQQ----- 369
           R+LRML N+R   +A+DG SNSVGD+V  VGS +Q  SP LPRGDN D+++KI+      
Sbjct: 358 RRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPRGDNTDMILKIKMAQLQQ 414

Query: 370 ---------QQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGND 420
                    QQQQ Q    H LS+QQSQ+SN  + QQ+KI   GS+TMDGSMSN+F+GND
Sbjct: 415 QQQQQQSSSQQQQQQQLQQHTLSNQQSQSSNHNMHQQEKIGGAGSVTMDGSMSNSFRGND 474

Query: 421 QASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGA 479
           Q SKNQ GRKRKQ VSSSGPANSSGTANT GP+PSS  S  + HTPGD IS P L H+G+
Sbjct: 475 QVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGS 534

Query: 480 SSKSL-LMFGSDGMGSLTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADP 529
           SSK L +MF SDG G+ TS  NQL          DMDR+V+DGSLDDNV+SFLS DD DP
Sbjct: 535 SSKPLTMMFNSDGTGTFTSPSNQLWDDKELELQADMDRYVEDGSLDDNVDSFLSHDDGDP 594

Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV 589
           RD VGR  +  KGFTFTE   + ASTSKV SCHFS DGKLL +GGHDKKAVLW TE+   
Sbjct: 595 RDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVSGGHDKKAVLWYTENLKP 654

Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649
           K++LEEH   +TDVRFSPS+ RLATSS DRTVRVWD +N  YSLRTFTGHS +VMSLDFH
Sbjct: 655 KTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYSLRTFTGHSASVMSLDFH 714

Query: 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
           P K+D +CSCD + EIRYW+I NGSCA VFK
Sbjct: 715 PKKDDFICSCDGDGEIRYWNITNGSCAAVFK 745

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515484|ref|XP_003526430.1| PREDICTED: transcriptional corepressor LEUNIG-like [Glycine max]

 Score =  815 bits (2106), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/740 (63%), Positives = 544/740 (73%), Gaps = 63/740 (8%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DYL+KR L ASA+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQ 120
           DIFIARTNEKHSE AASYIE+Q+IKAREQQQQQ QQ  +PQQ Q  Q    + Q   Q+ 
Sbjct: 61  DIFIARTNEKHSEVAASYIETQLIKAREQQQQQNQQQPQPQQSQHQQQHMQMQQLLLQRA 120

Query: 121 QQQQR------------------------RDSTQHLNDTGDDL--RPGFAKAFTTKMYED 154
           QQQQ+                        RD    LN + + L   PG A A  TKMYE+
Sbjct: 121 QQQQQQQQQQQQQPQSQQQQSQPQQQQQSRDRPHLLNGSANGLVGNPGTANALATKMYEE 180

Query: 155 RLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHG-VSQ 213
           RLK LP QRDSLDDA  K R  +NM QLLDPNHA +LK+AA   QPSGQ LHG  G +S 
Sbjct: 181 RLK-LPLQRDSLDDAATKQRFGENMGQLLDPNHAPILKSAAAPGQPSGQVLHGAAGGMSP 239

Query: 214 QVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQ 273
           QVQ+R+QQ P ST ++K E++P +NPRA G EGSL+G+ GSN G+ N+TLKGWPLTGL+Q
Sbjct: 240 QVQARTQQLPGSTLDIKGEISPVLNPRAVGPEGSLMGMPGSNPGSNNLTLKGWPLTGLEQ 299

Query: 274 FRSGLLQQQKSLTQ---PYNQLQL------QQLMLQAQQNLASPSANDLESRKLRMLHNS 324
            RSGLLQQQK   Q   P++QLQ+      QQLML AQQNLASPSA++ ESR+LRML N+
Sbjct: 300 LRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQLML-AQQNLASPSASE-ESRRLRMLLNN 357

Query: 325 RNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSH----- 379
           RN+GL +DG SN VGD+VS VGS +Q   P  PRGD D+L+K++  Q Q Q         
Sbjct: 358 RNIGLNKDGLSNPVGDVVSNVGSPLQGGGPPFPRGDTDMLVKLKLAQLQQQQQQQSSTNA 417

Query: 380 -------HPLSSQQSQNSNPLLQQQDKILAGG--SMTMDGSMSNTFQGNDQASKNQIGRK 430
                  H LS+QQSQ SN  + QQDK+  GG  S+T+DGSMSN+F+GNDQ SKNQIGRK
Sbjct: 418 QQQQLQQHTLSNQQSQTSNHSMHQQDKVGGGGGGSVTVDGSMSNSFRGNDQVSKNQIGRK 477

Query: 431 RKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGS 489
           RKQ  SSSGPANSSGTANT GP+PSS  S  + HTPGDVIS P L H+G+SSK L+MF +
Sbjct: 478 RKQPGSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFST 537

Query: 490 DGMGSLTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG 540
           DG G+LTS  NQL          D+DRFV+DGSLD+NVESFLS DD DPRD VGR  +V 
Sbjct: 538 DGTGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVS 597

Query: 541 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI 600
           KGFTF++   + ASTSKV  CHFS DGKLLA+GGHDKK VLW T+S   K+TLEEH+  I
Sbjct: 598 KGFTFSDVNSVRASTSKVSCCHFSSDGKLLASGGHDKKVVLWYTDSLKQKATLEEHSSLI 657

Query: 601 TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660
           TDVRFSPS+ RLATSS D+TVRVWD +NP YSLRTFTGHST+VMSLDFHP+K+DL+CSCD
Sbjct: 658 TDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCD 717

Query: 661 NNSEIRYWSINNGSCAGVFK 680
            + EIRYWSINNGSCA V K
Sbjct: 718 GDGEIRYWSINNGSCARVSK 737

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466351|ref|XP_003603460.1| NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula] gi|355492508|gb|AES73711.1| NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula]

 Score =  796 bits (2055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/793 (58%), Positives = 539/793 (67%), Gaps = 116/793 (14%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DYL+KR L ASA+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKARE-----------------------------QQQ 91
           DIFIARTNEKHSE AASYIE+Q+IKARE                              QQ
Sbjct: 61  DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQPQPQQSQHAQQQQQQHMQMQQ 120

Query: 92  QQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDL--RPGFAKAFTT 149
              Q+H + QQ QQ   QQ   Q    Q QQQQ RD T  LN + + L   P  A A  T
Sbjct: 121 LLMQRHAQQQQQQQQHQQQPQSQPQQPQPQQQQNRDRTHLLNGSANGLAGNPATANAIAT 180

Query: 150 KMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTH 209
           KMYE+RLK  P QRDSLDDA +K R  +NM QLLDPNHA++LK+AA G QPSGQ LHGT 
Sbjct: 181 KMYEERLKGPP-QRDSLDDAAMKQRFGENMGQLLDPNHASILKSAAAGGQPSGQVLHGTA 239

Query: 210 -GVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPL 268
            G+S QVQ+RSQQ P ST ++K+E+NP +NPRAAG EGSL+G+ GSNQG  N+TLKGWPL
Sbjct: 240 GGMSPQVQARSQQLPGSTTDIKSEINPVLNPRAAGPEGSLLGISGSNQGNNNLTLKGWPL 299

Query: 269 TGLDQFRSGLLQQQKSLT---QPYNQLQL------QQLMLQAQQNLASPSANDLESRKLR 319
           TGL+Q RSGLLQQQK      QP++QLQ+      QQLML AQQ+LASPSA++ ESR+LR
Sbjct: 300 TGLEQLRSGLLQQQKPYMQAPQPFHQLQMLTPQHQQQLML-AQQSLASPSASE-ESRRLR 357

Query: 320 MLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQ--------- 370
           ML N+RN+GL +DG SN  GD++S VGS +    P  PRGD D+L+K++           
Sbjct: 358 MLLNNRNIGLNKDGLSNPGGDMLSNVGSPLHGGGPPFPRGDTDMLMKLKLAQLQQQQQQQ 417

Query: 371 --------QQQLQHYSHHPLSSQQSQNSNPLLQQQDKI-LAGGSMTMDGSMSNTFQGNDQ 421
                     Q Q    H LS+QQSQ SN  + QQDK+   GGS+TMDGSMSN+++GNDQ
Sbjct: 418 QHQQQSSINAQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTMDGSMSNSYRGNDQ 477

Query: 422 --------------------------------------------ASKNQIGRKRKQAVSS 437
                                                        SKNQ+GRKRKQ VSS
Sbjct: 478 IKVQPTEQSEEVLMFCGIPPFACFWSKDEILNDGWLHSPIFAIVVSKNQMGRKRKQPVSS 537

Query: 438 SGPANSSGTANTPG-PTPSSPSSPSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLT 496
           SGPANSSGTANT G    S+PS+PSTHTPGD +S P L HN +SSK L+MF +DG G+LT
Sbjct: 538 SGPANSSGTANTAGPSPSSAPSTPSTHTPGDAVSMPALPHNSSSSKPLMMFSTDGTGTLT 597

Query: 497 SAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTE 547
           S  NQL          D+DRFVDDGSLDDNVESFLS DD DPRD VGR  +V KGFTF++
Sbjct: 598 SPSNQLWDDKDLELKADVDRFVDDGSLDDNVESFLSQDDTDPRDPVGRCMDVSKGFTFSD 657

Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
              + AS+SK+  CHFS DGKLLA+GGHDKKAV+W  +S   K+ LEEH+  ITDVRFS 
Sbjct: 658 VNSVRASSSKIACCHFSSDGKLLASGGHDKKAVIWYADSLKQKAILEEHSALITDVRFSA 717

Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
           S+ RLATSS D+TVRVWD +NP YSLRTFTGHST+VMSLDFHP+K+DL+CSCD + EIRY
Sbjct: 718 SMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRY 777

Query: 668 WSINNGSCAGVFK 680
           WSINNGSC  V K
Sbjct: 778 WSINNGSCVRVSK 790

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	695
ASPGD|ASPL0000006214	434	AN6385 [Emericella nidulans (t	0.191	0.306	0.376	5.3e-14
ASPGD|ASPL0000038644	577	AN10391 [Emericella nidulans (	0.171	0.206	0.398	6.3e-14
CGD|CAL0000165	798	orf19.536 [Candida albicans (t	0.185	0.161	0.348	1.8e-13
ASPGD|ASPL0000031743	954	AN8505 [Emericella nidulans (t	0.178	0.129	0.380	2.4e-13
UNIPROTKB|F1S845	542	TAF5 "Uncharacterized protein"	0.181	0.232	0.351	3.1e-13
DICTYBASE|DDB_G0287273	335	wdr5 "WD40 repeat-containing p	0.166	0.346	0.322	3.6e-13
TAIR|locus:2140215	333	WDR5b "AT4G02730" [Arabidopsis	0.221	0.462	0.270	5.9e-13
UNIPROTKB|E1C4U3	780	E1C4U3 "Uncharacterized protei	0.181	0.161	0.351	1e-12
UNIPROTKB|E1BEN8	800	TAF5 "Uncharacterized protein"	0.181	0.157	0.351	1.2e-12
UNIPROTKB|E2RE41	801	TAF5 "Uncharacterized protein"	0.181	0.157	0.351	1.2e-12

ASPGD|ASPL0000006214 AN6385 [Emericella nidulans (taxid:162425)]

 Score = 210 (79.0 bits), Expect = 5.3e-14, P = 5.3e-14
 Identities = 52/138 (37%), Positives = 75/138 (54%)

Query:   558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
             V S  FSPDG+LLA+G  +K   LW + +  +K TL  H+ W+  + FSP    LA+ S 
Sbjct:   158 VLSVAFSPDGQLLASGSAEKTIKLWDSATCGLKHTLGGHSNWVLPLVFSPDGRLLASGSN 217

Query:   618 DRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
             D T+++WD   P  SL+ T  GHS  + SL F P+ + LL S  +++ I+ W    GS  
Sbjct:   218 DATIKLWDP--PSGSLKHTLEGHSNKIESLAFSPNGQ-LLASGSSDATIKLWDTATGSFR 274

Query:   677 GVFKNFFESFVSVRVVQP 694
                K   +  +SV V  P
Sbjct:   275 HTLKGHSDMVLSV-VFSP 291

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ASPGD|ASPL0000038644 AN10391 [Emericella nidulans (taxid:162425)]

 Score = 212 (79.7 bits), Expect = 6.3e-14, P = 6.3e-14
 Identities = 49/123 (39%), Positives = 66/123 (53%)

Query:   558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
             V S  FS D +LLA+   D    +W T + +++ TLE H  W+  V FS     LA++S 
Sbjct:   424 VRSVIFSHDSQLLASASDDSTVKIWDTGTGSLQHTLEGHRDWVRSVIFSHDSRLLASASD 483

Query:   618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDF-HPSKEDLLCSCDNNSEIRYWSINNGSCA 676
             DRTVR+WDTE   +   T  GHS+ V S+ F H S+  LL S  N+  +R W I   S  
Sbjct:   484 DRTVRIWDTEKGSHK-HTLEGHSSLVTSVSFSHDSR--LLASASNDQTVRIWDIEARSLQ 540

Query:   677 GVF 679
               F
Sbjct:   541 HTF 543

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

CGD|CAL0000165 orf19.536 [Candida albicans (taxid:5476)]

 Score = 210 (79.0 bits), Expect = 1.8e-13, P = 1.8e-13
 Identities = 46/132 (34%), Positives = 69/132 (52%)

Query:   563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
             FSPD K L +   DK   LW  +++T   + + HTQ + DV+FSP      T+S D+T R
Sbjct:   525 FSPDNKYLLSCSEDKTVRLWSLDTYTALVSYKGHTQPVWDVKFSPLGHYFVTASHDQTAR 584

Query:   623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF 682
             +W T++  Y LR F GH   V  ++FHP+   +     + +  R W ++ G+C  VF   
Sbjct:   585 LWATDHI-YPLRIFAGHINDVDCVEFHPNSNYVFTGSSDKT-CRMWDVHTGNCVRVFLGH 642

Query:   683 FESFVSVRVVQP 694
               S V+   V P
Sbjct:   643 TNS-VNCLAVSP 653

GO:0000124 "SAGA complex" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0046695 "SLIK (SAGA-like) complex" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0016573 "histone acetylation" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA

ASPGD|ASPL0000031743 AN8505 [Emericella nidulans (taxid:162425)]

 Score = 210 (79.0 bits), Expect = 2.4e-13, P = 2.4e-13
 Identities = 48/126 (38%), Positives = 66/126 (52%)

Query:   549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 608
             Q +   +  V S  FSPDG+LLA+G  DK   LW   + +++ TL  H+ W+  V FSP 
Sbjct:   731 QTLEGHSGWVLSVAFSPDGRLLASGSFDKTVRLWDPATGSLQQTLRGHSNWVRSVAFSPD 790

Query:   609 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
                LA+ S D+TVR+WD        +T  GHS TV S+ F P    LL S   +  +R W
Sbjct:   791 GRLLASGSFDKTVRLWDPATGSLQ-QTLRGHSDTVRSVAFSPDGR-LLASGSFDKTVRLW 848

Query:   669 SINNGS 674
                 G+
Sbjct:   849 DPATGT 854

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F1S845 TAF5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 203 (76.5 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
 Identities = 45/128 (35%), Positives = 65/128 (50%)

Query:   563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
             FSP G    +GGHD+ A LW T+ +        H   +   RF P+ + +AT SADRTVR
Sbjct:   353 FSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVR 412

Query:   623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF 682
             +WD  N +  +R FTGH   + SL F P+    L +   +  +  W I +G   G  K  
Sbjct:   413 LWDVLNGN-CVRIFTGHKGPIHSLTFSPNGR-FLATGATDGRVLLWDIGHGLMVGELKGH 470

Query:   683 FESFVSVR 690
              ++  S+R
Sbjct:   471 TDTVCSLR 478

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 199 (75.1 bits), Expect = 3.6e-13, P = 3.6e-13
 Identities = 38/118 (32%), Positives = 64/118 (54%)

Query:   558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
             + S  FSPDGK LA+   DK   +W       + TLE H + I+D+ +S     + ++S 
Sbjct:    49 ISSVKFSPDGKWLASASADKTIKIWGAYDGKFERTLEGHKEGISDIAWSQDSKLICSASD 108

Query:   618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675
             D+T+++WD E+    ++T  GH   V  + F+P + +L+ S   +  +R W +N G C
Sbjct:   109 DKTIKIWDVESGKM-VKTLKGHKEYVFGVSFNP-QSNLIVSGSFDENVRIWDVNTGEC 164

GO:0051568 "histone H3-K4 methylation" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2140215 WDR5b "AT4G02730" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 5.9e-13, P = 5.9e-13
 Identities = 42/155 (27%), Positives = 74/155 (47%)

Query:   526 DADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585
             +A+     G S  V     +   + +   T+ +    FS DG LLA+   DK  +LW   
Sbjct:    14 NANSTGNAGTSGNVPIYKPYRHLKTLEGHTAAISCVKFSNDGNLLASASVDKTMILWSAT 73

Query:   586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
             ++++    E H+  I+D+ +S       ++S D T+R+WD  +P   L+   GH+  V  
Sbjct:    74 NYSLIHRYEGHSSGISDLAWSSDSHYTCSASDDCTLRIWDARSPYECLKVLRGHTNFVFC 133

Query:   646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
             ++F+P   +L+ S   +  IR W +  G C  + K
Sbjct:   134 VNFNPPS-NLIVSGSFDETIRIWEVKTGKCVRMIK 167

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

UNIPROTKB|E1C4U3 E1C4U3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 206 (77.6 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
 Identities = 45/128 (35%), Positives = 66/128 (51%)

Query:   563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
             FSP G    +GGHD+ A LW T+ +        H   +T  RF P+ + +AT SADRTVR
Sbjct:   573 FSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVTCTRFHPNSNYIATGSADRTVR 632

Query:   623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF 682
             +WD  N +  +R FTGH   + SL F P+    L +   +  +  W I +G   G  K  
Sbjct:   633 LWDVLNGN-CVRIFTGHKGPIHSLAFSPNGR-FLATGATDGRVLLWDIGHGLMVGELKGH 690

Query:   683 FESFVSVR 690
              ++  ++R
Sbjct:   691 TDTIYALR 698

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|E1BEN8 TAF5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 203 (76.5 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
 Identities = 45/128 (35%), Positives = 65/128 (50%)

Query:   563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
             FSP G    +GGHD+ A LW T+ +        H   +   RF P+ + +AT SADRTVR
Sbjct:   593 FSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVR 652

Query:   623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF 682
             +WD  N +  +R FTGH   + SL F P+    L +   +  +  W I +G   G  K  
Sbjct:   653 LWDVLNGN-CVRIFTGHKGPIHSLTFSPNGR-FLATGATDGRVLLWDIGHGLMVGELKGH 710

Query:   683 FESFVSVR 690
              ++  S+R
Sbjct:   711 TDTVCSLR 718

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|E2RE41 TAF5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 203 (76.5 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
 Identities = 45/128 (35%), Positives = 65/128 (50%)

Query:   563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
             FSP G    +GGHD+ A LW T+ +        H   +   RF P+ + +AT SADRTVR
Sbjct:   594 FSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVR 653

Query:   623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF 682
             +WD  N +  +R FTGH   + SL F P+    L +   +  +  W I +G   G  K  
Sbjct:   654 LWDVLNGN-CVRIFTGHKGPIHSLTFSPNGR-FLATGATDGRVLLWDIGHGLMVGELKGH 711

Query:   683 FESFVSVR 690
              ++  S+R
Sbjct:   712 TDTVCSLR 719

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_VI1732 hypothetical protein (894 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	695
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-31
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-30
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-28
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-22
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-18
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-16
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-11
smart00320	40	smart00320, WD40, WD40 repeats	5e-10
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-09
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	2e-06
pfam08513	27	pfam08513, LisH, LisH	7e-06
smart00320	40	smart00320, WD40, WD40 repeats	7e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	9e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	2e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	4e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-04
smart00667	34	smart00667, LisH, Lissencephaly type-1-like homolo	6e-04
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	9e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.001
smart00320	40	smart00320, WD40, WD40 repeats	0.002
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.002
pfam07321	152	pfam07321, YscO, Type III secretion protein YscO	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  122 bits (309), Expect = 5e-31
 Identities = 49/137 (35%), Positives = 72/137 (52%), Gaps = 2/137 (1%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           TS V S  FSPDG++L++   DK   +W  E+    +TL  HT W+  V FSP  + +A+
Sbjct: 93  TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVAS 152

Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           SS D T+++WD       + T TGH+  V S+ F P  E LL S  + + I+ W ++ G 
Sbjct: 153 SSQDGTIKLWDLRTG-KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGK 210

Query: 675 CAGVFKNFFESFVSVRV 691
           C G  +       SV  
Sbjct: 211 CLGTLRGHENGVNSVAF 227

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  122 bits (307), Expect = 1e-30
 Identities = 47/130 (36%), Positives = 69/130 (53%), Gaps = 2/130 (1%)

Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
           +   T  V    FSPDGKLLATG  D    +W  E+  +  TL+ HT  + DV  S   +
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT 64

Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
            LA+ S+D+T+R+WD E  +  +RT TGH++ V S+ F P    +L S   +  I+ W +
Sbjct: 65  YLASGSSDKTIRLWDLETGE-CVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDV 122

Query: 671 NNGSCAGVFK 680
             G C    +
Sbjct: 123 ETGKCLTTLR 132

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  113 bits (285), Expect = 7e-28
 Identities = 46/148 (31%), Positives = 62/148 (41%), Gaps = 2/148 (1%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
           T      +   T  V S  FSPDG  +A+   D    LW   +    +TL  HT  +  V
Sbjct: 124 TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSV 183

Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
            FSP   +L +SS+D T+++WD       L T  GH   V S+ F P    LL S   + 
Sbjct: 184 AFSPDGEKLLSSSSDGTIKLWDLSTGK-CLGTLRGHENGVNSVAFSPDG-YLLASGSEDG 241

Query: 664 EIRYWSINNGSCAGVFKNFFESFVSVRV 691
            IR W +  G C         S  S+  
Sbjct: 242 TIRVWDLRTGECVQTLSGHTNSVTSLAW 269

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 98.2 bits (245), Expect = 1e-22
 Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 2/126 (1%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
           T      +   T +V S  FSPDG+ L +   D    LW   +     TL  H   +  V
Sbjct: 166 TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSV 225

Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
            FSP    LA+ S D T+RVWD    +  ++T +GH+ +V SL + P  +  L S   + 
Sbjct: 226 AFSPDGYLLASGSEDGTIRVWDLRTGE-CVQTLSGHTNSVTSLAWSPDGKR-LASGSADG 283

Query: 664 EIRYWS 669
            IR W 
Sbjct: 284 TIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 87.8 bits (216), Expect = 3e-18
 Identities = 44/122 (36%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTV 621
           FSPDG LLA+G  D    LW   S +    TL  H+  +  V FSP    LA+ S+D TV
Sbjct: 249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTV 308

Query: 622 RVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
           R+WD E     S  T  GH   V SL F P    L+    ++  IR W +  G      +
Sbjct: 309 RLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE 368

Query: 681 NF 682
             
Sbjct: 369 GH 370

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 2/104 (1%)

Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649
           + TL+ HT  +T V FSP    LAT S D T++VWD E  +  LRT  GH+  V  +   
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL-LRTLKGHTGPVRDVAAS 60

Query: 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQ 693
                L     + + IR W +  G C            SV    
Sbjct: 61  ADGTYLASGSSDKT-IRLWDLETGECVRTLTGHTSYVSSVAFSP 103

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 77.8 bits (190), Expect = 5e-15
 Identities = 44/190 (23%), Positives = 67/190 (35%), Gaps = 11/190 (5%)

Query: 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556
           S   + +++   ++  SL     S               S                    
Sbjct: 13  SKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGH------ED 66

Query: 557 KVESCHFSPDGKLLATGGHDKKAVLWC--TESFTVKSTLEEHTQWITDVRF-SPSLSRLA 613
            + S  FSPDG+LL +G  D    LW        +KS    H   ++ +   SP  + + 
Sbjct: 67  SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSIL 126

Query: 614 T--SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
              SS D TV++WD   P   +RT  GHS +V SL F P  + L      +  I+ W + 
Sbjct: 127 LASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR 186

Query: 672 NGSCAGVFKN 681
            G        
Sbjct: 187 TGKPLSTLAG 196

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 77.8 bits (190), Expect = 5e-15
 Identities = 47/141 (33%), Positives = 69/141 (48%), Gaps = 4/141 (2%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLW-CTESFTVKSTLEEHTQWIT 601
           T      +   T  V S  FSPDG  L+A+G  D    LW  +    ++STL  H+  + 
Sbjct: 187 TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV 246

Query: 602 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661
              FSP  S LA+ S+D T+R+WD  +    LRT +GHS++V+S+ F P    LL S  +
Sbjct: 247 SS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD-GKLLASGSS 304

Query: 662 NSEIRYWSINNGSCAGVFKNF 682
           +  +R W +  G         
Sbjct: 305 DGTVRLWDLETGKLLSSLTLK 325

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 65.9 bits (159), Expect = 3e-11
 Identities = 46/139 (33%), Positives = 63/139 (45%), Gaps = 4/139 (2%)

Query: 551 IPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 609
           +      V S  FSPDG LL +GG  D    LW   +     TLE H+  +  V FSP  
Sbjct: 324 LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSPDG 382

Query: 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
             +++ S D TVR+WD       LR   GH++ V SLDF P     L S  +++ IR W 
Sbjct: 383 RVVSSGSTDGTVRLWDLSTGS-LLRNLDGHTSRVTSLDFSPD-GKSLASGSSDNTIRLWD 440

Query: 670 INNGSCAGVFKNFFESFVS 688
           +     +  F    +   S
Sbjct: 441 LKTSLKSVSFSPDGKVLAS 459

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 54.6 bits (132), Expect = 5e-10
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625
           S  +  TL+ HT  +T V FSP    LA+ S D T+++WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 19/39 (48%), Positives = 24/39 (61%)

Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625
             +  TL+ HT  +T V FSP  + LA+ S D TVRVWD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 50.7 bits (121), Expect = 2e-06
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 8/88 (9%)

Query: 593 LEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLR-------TFTGHSTTVM 644
           L+ HT  I D++F+P  S  LA+ S D T+RVW+  + D S++          GH   + 
Sbjct: 70  LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129

Query: 645 SLDFHPSKEDLLCSCDNNSEIRYWSINN 672
            +D++P    ++CS   +S +  W I N
Sbjct: 130 IIDWNPMNYYIMCSSGFDSFVNIWDIEN 157

Length = 568

>gnl|CDD|149534 pfam08513, LisH, LisH

 Score = 42.7 bits (102), Expect = 7e-06
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 10 KMLDVYIYDYLLKRKLHASAKAFQTEG 36
          + L+  IYDYL+K     +A+AF  E 
Sbjct: 1  EELNRLIYDYLVKSGYKETAEAFAKES 27

The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex. Length = 27

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.4 bits (95), Expect = 7e-05
 Identities = 15/39 (38%), Positives = 19/39 (48%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582
           +    + +   T  V S  FSPDGK LA+G  D    LW
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.6 bits (93), Expect = 9e-05
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582
           +   T  V S  FSPDG LLA+G  D    +W
Sbjct: 7   LKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 7/89 (7%)

Query: 600 ITDVRFSP-SLSRLATSSADRTVRVWD------TENPDYSLRTFTGHSTTVMSLDFHPSK 652
           I DV F+P    +L T+S D T+  W       T+N    +    GH+  V  + FHPS 
Sbjct: 78  IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA 137

Query: 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKN 681
            ++L S   +  +  W +  G    V K 
Sbjct: 138 MNVLASAGADMVVNVWDVERGKAVEVIKC 166

Length = 493

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 43.5 bits (102), Expect = 4e-04
 Identities = 40/125 (32%), Positives = 55/125 (44%), Gaps = 5/125 (4%)

Query: 564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVR 622
           S D  LLA+G  D    LW         T++     I  V+F     R LA  SAD  V 
Sbjct: 585 SADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN-ICCVQFPSESGRSLAFGSADHKVY 643

Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF 682
            +D  NP   L T  GHS TV  + F  S   +  S DN   ++ W ++  S +G+ +  
Sbjct: 644 YYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNT--LKLWDLSM-SISGINETP 700

Query: 683 FESFV 687
             SF+
Sbjct: 701 LHSFM 705

Length = 793

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
           LRT  GH+  V S+ F P   +LL S  ++  +R W 
Sbjct: 4   LRTLKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif

 Score = 37.4 bits (88), Expect = 6e-04
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 10 KMLDVYIYDYLLKRKLHASAKAFQTEGKVS 39
            L+  I +YLL+     +A+  Q E  +S
Sbjct: 4  SELNRLILEYLLRNGYEETAETLQKESGLS 33

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 42.2 bits (100), Expect = 9e-04
 Identities = 24/82 (29%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 88  EQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDLRPGFAKAF 147
           +Q Q  Q Q Q  QQ QQ Q QQ   Q    Q  Q    +  Q L D     R G     
Sbjct: 625 QQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELGRQRGGLPGMG 684

Query: 148 TTKMYEDRLKKLPFQRDSLDDA 169
                          RD+L  A
Sbjct: 685 GEAGEAA--------RDALGRA 698

Length = 820

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 15/51 (29%), Positives = 18/51 (35%)

Query: 81  SQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQH 131
           SQ         Q  QQ    QQ Q   + Q +     Q  QQQQ+    Q 
Sbjct: 224 SQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQA 274

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
           L+T  GH+  V S+ F P     L S  ++  I+ W 
Sbjct: 5   LKTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.0 bits (97), Expect = 0.002
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 87  REQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQ------QQQRRDSTQHLNDTGDDLR 140
           + Q  QQ QQ Q  QQ QQ Q  Q      A++QQ       +QR        + G+  R
Sbjct: 633 QGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELGRQRGGLPGMGGEAGEAAR 692

Query: 141 PGFAKA 146
               +A
Sbjct: 693 DALGRA 698

Length = 820

>gnl|CDD|148750 pfam07321, YscO, Type III secretion protein YscO

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 62  IFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQ 121
           + + R NE   E   +  + ++   R++ +Q +QQ Q+ ++  Q +  +L  Q  A+ Q 
Sbjct: 76  VGLLRENEASLEQQLAEAKQRLEAERQRLRQARQQLQEARK-AQEKFAELARQEQAEAQA 134

Query: 122 QQQRR 126
           Q+Q  
Sbjct: 135 QRQYL 139

This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis. Length = 152

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 39.9 bits (94), Expect = 0.004
 Identities = 11/44 (25%), Positives = 16/44 (36%)

Query: 87  REQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQ 130
           R+ Q+Q   Q  + Q  Q    Q         QQ Q Q++    
Sbjct: 609 RDLQEQFNAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQG 652

Length = 820

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	695
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.94
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.94
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.94
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.94
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.93
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.92
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.92
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.91
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.91
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.9
KOG0286	343	consensus G-protein beta subunit [General function	99.9
KOG0266	456	consensus WD40 repeat-containing protein [General	99.9
KOG0286	343	consensus G-protein beta subunit [General function	99.9
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.9
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.89
KOG0266	456	consensus WD40 repeat-containing protein [General	99.89
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.89
KOG0645	312	consensus WD40 repeat protein [General function pr	99.88
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.88
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.88
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.87
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.87
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.87
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.86
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.86
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.86
PTZ00421	493	coronin; Provisional	99.86
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.86
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.86
KOG0645	312	consensus WD40 repeat protein [General function pr	99.86
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.86
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.85
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.85
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.85
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.84
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.84
PTZ00421	493	coronin; Provisional	99.84
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.84
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.83
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.83
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.83
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.83
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.82
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.82
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.82
PLN00181	793	protein SPA1-RELATED; Provisional	99.82
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.82
PTZ00420	568	coronin; Provisional	99.82
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.81
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.81
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.81
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.81
KOG0267	825	consensus Microtubule severing protein katanin p80	99.81
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.81
PTZ00420	568	coronin; Provisional	99.8
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.8
PLN00181	793	protein SPA1-RELATED; Provisional	99.8
KOG0296	399	consensus Angio-associated migratory cell protein	99.79
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.79
KOG0641	350	consensus WD40 repeat protein [General function pr	99.79
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.78
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.78
KOG0267	825	consensus Microtubule severing protein katanin p80	99.78
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.78
KOG0643	327	consensus Translation initiation factor 3, subunit	99.78
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.78
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.78
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.78
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.78
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.77
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.77
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.77
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.76
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.76
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.76
KOG0289	506	consensus mRNA splicing factor [General function p	99.76
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.76
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.75
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.75
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.75
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.75
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.74
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.74
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.74
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.73
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.73
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.73
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.72
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.72
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.72
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.72
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.71
KOG0646	476	consensus WD40 repeat protein [General function pr	99.71
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.7
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.7
KOG0641	350	consensus WD40 repeat protein [General function pr	99.69
KOG0289	506	consensus mRNA splicing factor [General function p	99.69
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.69
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.69
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.69
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.69
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.68
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.68
KOG0643	327	consensus Translation initiation factor 3, subunit	99.68
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.67
KOG0296	399	consensus Angio-associated migratory cell protein	99.67
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.65
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.64
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.64
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.63
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.62
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.62
KOG1274	933	consensus WD40 repeat protein [General function pr	99.62
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.61
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.61
KOG2096	420	consensus WD40 repeat protein [General function pr	99.61
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.61
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.61
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.6
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.6
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.59
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.58
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.58
KOG1274	933	consensus WD40 repeat protein [General function pr	99.57
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.57
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.57
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.56
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.56
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.56
KOG0646	476	consensus WD40 repeat protein [General function pr	99.56
KOG1273	405	consensus WD40 repeat protein [General function pr	99.55
KOG1539	910	consensus WD repeat protein [General function pred	99.55
KOG0639	705	consensus Transducin-like enhancer of split protei	99.55
KOG4328	498	consensus WD40 protein [Function unknown]	99.54
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.53
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.53
KOG0639	705	consensus Transducin-like enhancer of split protei	99.52
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.52
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.49
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.49
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.49
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.49
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.49
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.49
KOG2048	691	consensus WD40 repeat protein [General function pr	99.48
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.47
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.47
KOG2055	514	consensus WD40 repeat protein [General function pr	99.47
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.46
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.46
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.45
KOG1273	405	consensus WD40 repeat protein [General function pr	99.45
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.45
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.44
KOG0649	325	consensus WD40 repeat protein [General function pr	99.44
COG2319	466	FOG: WD40 repeat [General function prediction only	99.44
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.43
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.42
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.42
COG2319	466	FOG: WD40 repeat [General function prediction only	99.42
KOG1310	758	consensus WD40 repeat protein [General function pr	99.42
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.42
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.41
KOG1188	376	consensus WD40 repeat protein [General function pr	99.4
KOG0649	325	consensus WD40 repeat protein [General function pr	99.39
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.38
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.37
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.37
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.37
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.35
KOG4328	498	consensus WD40 protein [Function unknown]	99.35
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.34
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.34
KOG2096	420	consensus WD40 repeat protein [General function pr	99.33
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.32
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.3
KOG4594	354	consensus Sequence-specific single-stranded-DNA-bi	99.29
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.28
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.28
KOG2048	691	consensus WD40 repeat protein [General function pr	99.27
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.26
KOG1539	910	consensus WD repeat protein [General function pred	99.25
KOG1310	758	consensus WD40 repeat protein [General function pr	99.25
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.24
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.22
KOG2055	514	consensus WD40 repeat protein [General function pr	99.2
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.19
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.19
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.18
KOG2139	445	consensus WD40 repeat protein [General function pr	99.16
PRK01742	429	tolB translocation protein TolB; Provisional	99.15
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.15
KOG4227	609	consensus WD40 repeat protein [General function pr	99.15
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.15
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.15
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.13
KOG4227	609	consensus WD40 repeat protein [General function pr	99.13
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.13
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.12
KOG1188	376	consensus WD40 repeat protein [General function pr	99.11
PRK01742	429	tolB translocation protein TolB; Provisional	99.1
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.1
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.06
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.06
KOG4547	541	consensus WD40 repeat-containing protein [General	99.06
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.06
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.05
KOG2139	445	consensus WD40 repeat protein [General function pr	99.04
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.03
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.01
KOG1963	792	consensus WD40 repeat protein [General function pr	99.0
PRK05137	435	tolB translocation protein TolB; Provisional	98.99
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.98
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.98
PRK02889	427	tolB translocation protein TolB; Provisional	98.97
PRK11028	330	6-phosphogluconolactonase; Provisional	98.96
PRK02889	427	tolB translocation protein TolB; Provisional	98.96
PRK11028	330	6-phosphogluconolactonase; Provisional	98.95
PRK05137	435	tolB translocation protein TolB; Provisional	98.95
PRK03629	429	tolB translocation protein TolB; Provisional	98.94
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.93
KOG4547	541	consensus WD40 repeat-containing protein [General	98.91
PRK04922	433	tolB translocation protein TolB; Provisional	98.91
PRK04922	433	tolB translocation protein TolB; Provisional	98.9
PRK03629	429	tolB translocation protein TolB; Provisional	98.89
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.89
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	98.88
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.87
KOG3881	412	consensus Uncharacterized conserved protein [Funct	98.86
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	98.84
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.82
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.81
KOG0771	398	consensus Prolactin regulatory element-binding pro	98.78
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.78
PRK01029	428	tolB translocation protein TolB; Provisional	98.77
PRK01029	428	tolB translocation protein TolB; Provisional	98.77
KOG2321	703	consensus WD40 repeat protein [General function pr	98.76
KOG2321	703	consensus WD40 repeat protein [General function pr	98.71
PRK00178	430	tolB translocation protein TolB; Provisional	98.7
PRK00178	430	tolB translocation protein TolB; Provisional	98.68
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.67
KOG1334	559	consensus WD40 repeat protein [General function pr	98.65
KOG2695	425	consensus WD40 repeat protein [General function pr	98.65
KOG1963	792	consensus WD40 repeat protein [General function pr	98.64
PRK04792	448	tolB translocation protein TolB; Provisional	98.61
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.6
KOG2315	566	consensus Predicted translation initiation factor	98.6
PRK04792	448	tolB translocation protein TolB; Provisional	98.59
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.59
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.56
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.56
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.54
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.53
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.52
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.47
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.41
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.4
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.39
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.39
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	98.38
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.37
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.35
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.34
KOG1334	559	consensus WD40 repeat protein [General function pr	98.34
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.34
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.33
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.29
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.25
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.25
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.2
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.2
COG4946	668	Uncharacterized protein related to the periplasmic	98.17
PRK04043	419	tolB translocation protein TolB; Provisional	98.15
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.14
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.13
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.13
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.11
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.09
KOG2315	566	consensus Predicted translation initiation factor	98.06
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.04
PRK04043	419	tolB translocation protein TolB; Provisional	98.02
COG4946	668	Uncharacterized protein related to the periplasmic	97.99
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.99
KOG2695	425	consensus WD40 repeat protein [General function pr	97.98
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.97
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.93
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.91
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.9
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	97.88
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.87
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.85
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.81
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.78
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.77
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	97.75
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.7
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.68
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	97.68
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.66
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.59
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.58
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.49
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.43
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.41
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.41
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.39
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.38
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.35
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.29
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.29
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.29
KOG2314	698	consensus Translation initiation factor 3, subunit	97.23
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.22
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.2
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.16
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.16
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.09
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.09
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.08
KOG3621	726	consensus WD40 repeat-containing protein [General	97.07
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.07
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.04
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.01
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.01
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.98
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	96.97
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	96.93
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.88
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.77
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	96.61
KOG2314	698	consensus Translation initiation factor 3, subunit	96.55
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.51
PRK02888	635	nitrous-oxide reductase; Validated	96.5
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.49
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	96.39
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.37
KOG2395	644	consensus Protein involved in vacuole import and d	96.35
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.34
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.32
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.26
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.25
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.15
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.12
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	96.1
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.08
PRK02888	635	nitrous-oxide reductase; Validated	96.06
KOG3621	726	consensus WD40 repeat-containing protein [General	95.88
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.86
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.83
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	95.81
KOG1008	783	consensus Uncharacterized conserved protein, conta	95.75
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.52
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.5
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.47
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	95.44
KOG2444	238	consensus WD40 repeat protein [General function pr	95.44
COG3391	381	Uncharacterized conserved protein [Function unknow	95.38
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	95.36
PRK13616	591	lipoprotein LpqB; Provisional	95.32
PRK13616	591	lipoprotein LpqB; Provisional	95.3
COG3391	381	Uncharacterized conserved protein [Function unknow	95.25
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.24
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.24
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	95.13
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.09
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.07
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	94.97
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.74
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	94.67
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.66
KOG2444	238	consensus WD40 repeat protein [General function pr	94.65
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.56
KOG2395	644	consensus Protein involved in vacuole import and d	94.5
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.25
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	94.19
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.12
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.78
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	93.73
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	93.66
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	93.65
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.53
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	93.23
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	93.07
PHA02713	557	hypothetical protein; Provisional	93.06
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	93.03
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.85
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	92.8
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	92.46
PRK10350	145	hypothetical protein; Provisional	92.33
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	92.29
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	92.18
PRK10115	686	protease 2; Provisional	91.84
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	91.76
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	91.52
PF11498	468	Activator_LAG-3: Transcriptional activator LAG-3;	91.46
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	91.33
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	91.09
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	90.42
KOG2377	657	consensus Uncharacterized conserved protein [Funct	90.21
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	90.16
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	90.09
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	89.81
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	89.67
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	89.5
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	89.5
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	89.49
COG5167	776	VID27 Protein involved in vacuole import and degra	89.48
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	89.47
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	89.36
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	89.32
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	89.16
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	89.07
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	89.02
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	88.91
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	88.61
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	88.3
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	88.26
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	88.2
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	88.04
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	87.95
PF11498	468	Activator_LAG-3: Transcriptional activator LAG-3;	87.82
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	87.72
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	87.36
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	86.97
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	86.94
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	86.59
PRK13684	334	Ycf48-like protein; Provisional	86.3
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	86.18
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	86.13
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	85.8
PF12768	281	Rax2: Cortical protein marker for cell polarity	85.61
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	84.74
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	84.62
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	84.2
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	84.19
PHA03098	534	kelch-like protein; Provisional	83.51
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	83.41
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	83.29
PHA03098	534	kelch-like protein; Provisional	83.14
KOG2247	615	consensus WD40 repeat-containing protein [General	82.67
PLN00033	398	photosystem II stability/assembly factor; Provisio	82.66
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	82.62
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	81.9
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	81.88
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	81.46
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	80.78
PHA02713	557	hypothetical protein; Provisional	80.59
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	80.14

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=1e-26  Score=243.66  Aligned_cols=203  Identities=25%  Similarity=0.329  Sum_probs=173.9

Q ss_pred             ccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCC--------------------------C
Q 005473          475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA--------------------------D  528 (695)
Q Consensus       475 ~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~--------------------------~  528 (695)
                      ...+...+..+.|+|..             .+.-+++|+.|++|++|......                          .
T Consensus       213 l~gH~~~v~~~~fhP~~-------------~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Ta  279 (459)
T KOG0272|consen  213 LRGHTSRVGAAVFHPVD-------------SDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTA  279 (459)
T ss_pred             EeccccceeeEEEccCC-------------CccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeec
Confidence            34455566666677642             12467888999999999765532                          1


Q ss_pred             CCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCC
Q 005473          529 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS  608 (695)
Q Consensus       529 ~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spd  608 (695)
                      ..|...++||..+.   .++....||...|.+|+|.+||.+++||+.|..-+|||++++.++..+.+|...|.+|.|+|+
T Consensus       280 sfD~tWRlWD~~tk---~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPN  356 (459)
T KOG0272|consen  280 SFDSTWRLWDLETK---SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPN  356 (459)
T ss_pred             ccccchhhcccccc---hhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCC
Confidence            22344466665554   556667899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEE
Q 005473          609 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVS  688 (695)
Q Consensus       609 g~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~Vts  688 (695)
                      |-.|||||.|++++|||++.... +.++.+|..-|+.|+|.|....+|++|+.|++++||..++..++.++-||.+.|.+
T Consensus       357 Gy~lATgs~Dnt~kVWDLR~r~~-ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s  435 (459)
T KOG0272|consen  357 GYHLATGSSDNTCKVWDLRMRSE-LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVIS  435 (459)
T ss_pred             ceEEeecCCCCcEEEeeeccccc-ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEE
Confidence            99999999999999999997664 89999999999999999977779999999999999999999999999999999999


Q ss_pred             EEEeCCC
Q 005473          689 VRVVQPR  695 (695)
Q Consensus       689 Vaf~sPd  695 (695)
                      +++ +||
T Consensus       436 ~Di-s~d  441 (459)
T KOG0272|consen  436 LDI-SPD  441 (459)
T ss_pred             EEe-ccC
Confidence            999 875

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=9.8e-27  Score=243.85  Aligned_cols=183  Identities=29%  Similarity=0.396  Sum_probs=167.1

Q ss_pred             cCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 005473          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (695)
Q Consensus       476 ~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~  555 (695)
                      +.+.++++...|+.++               ..+++||++|.+++|.++..                   ..+.++++|+
T Consensus       172 ~gd~rPis~~~fS~ds---------------~~laT~swsG~~kvW~~~~~-------------------~~~~~l~gH~  217 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDS---------------KHLATGSWSGLVKVWSVPQC-------------------NLLQTLRGHT  217 (459)
T ss_pred             ccCCCcceeeEeecCC---------------CeEEEeecCCceeEeecCCc-------------------ceeEEEeccc
Confidence            3455677777777766               67899999999999955432                   4678899999


Q ss_pred             CCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE
Q 005473          556 SKVESCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (695)
Q Consensus       556 ~~V~~v~fspd--g~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l  633 (695)
                      +.|.++.|+|.  +..||||+.||+|++|++.+..++..+++|...|..++|+|+|++|+|+|+|.+-++||++++.. +
T Consensus       218 ~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E-l  296 (459)
T KOG0272|consen  218 SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE-L  296 (459)
T ss_pred             cceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh-h
Confidence            99999999997  56899999999999999999999999999999999999999999999999999999999999776 6


Q ss_pred             EEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       634 ~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ....||...|.+++|+|||. ++++|+.|..-||||+++|.|+..+.+|...|.+|+| +|+
T Consensus       297 L~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~f-sPN  356 (459)
T KOG0272|consen  297 LLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAF-SPN  356 (459)
T ss_pred             HhhcccccccceeEecCCCc-eeeccCccchhheeecccCcEEEEecccccceeeEeE-CCC
Confidence            67789999999999999998 8899999999999999999999999999999999999 996

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.94  E-value=3.7e-26  Score=255.08  Aligned_cols=183  Identities=29%  Similarity=0.431  Sum_probs=166.4

Q ss_pred             cCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 005473          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (695)
Q Consensus       476 ~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~  555 (695)
                      ..++.++.-..|.|+.               +|+.++|.|++||+|..                   .++.++..++||.
T Consensus       448 ~GH~GPVyg~sFsPd~---------------rfLlScSED~svRLWsl-------------------~t~s~~V~y~GH~  493 (707)
T KOG0263|consen  448 YGHSGPVYGCSFSPDR---------------RFLLSCSEDSSVRLWSL-------------------DTWSCLVIYKGHL  493 (707)
T ss_pred             ecCCCceeeeeecccc---------------cceeeccCCcceeeeec-------------------ccceeEEEecCCC
Confidence            3444555555555544               89999999999999943                   3446788889999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE
Q 005473          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~  635 (695)
                      .+|.++.|+|-|-|+|||++|++.++|..+...+++.+.+|-+.|.|+.|+|+..+++|||.|++||+||+.++.. ++.
T Consensus       494 ~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~-VRi  572 (707)
T KOG0263|consen  494 APVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS-VRI  572 (707)
T ss_pred             cceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE-EEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999774 999


Q ss_pred             EecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       636 ~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      |.||.+.|.+|+|+|+|. +|++|+.||.|.|||+.+++.+..+++|++.|.+|.| +.|
T Consensus       573 F~GH~~~V~al~~Sp~Gr-~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsF-S~d  630 (707)
T KOG0263|consen  573 FTGHKGPVTALAFSPCGR-YLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSF-SRD  630 (707)
T ss_pred             ecCCCCceEEEEEcCCCc-eEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEE-ecC
Confidence            999999999999999998 7779999999999999999999999999999999999 764

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.94  E-value=3.4e-25  Score=222.25  Aligned_cols=201  Identities=24%  Similarity=0.387  Sum_probs=166.7

Q ss_pred             cccccCCCCCceEEEEecCCC-ccccccCCccCCCC------------cEEEEeeCCCcEEEEeCCCCCCCCCccccccc
Q 005473          472 PTLQHNGASSKSLLMFGSDGM-GSLTSAPNQLTDMD------------RFVDDGSLDDNVESFLSPDDADPRDRVGRSAE  538 (695)
Q Consensus       472 ~~l~~s~s~~~s~l~~~~dg~-~~la~s~~~l~~~~------------~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d  538 (695)
                      +.+..+++++++++.|..... ..+..+...+.+|+            +|..++++|+++++|+...+            
T Consensus        28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g------------   95 (315)
T KOG0279|consen   28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG------------   95 (315)
T ss_pred             CceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC------------
Confidence            345667888999999987655 33444444444443            56778999999999966543            


Q ss_pred             cCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc-cCCCeEEEEEcCC--CCEEEEE
Q 005473          539 VGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPS--LSRLATS  615 (695)
Q Consensus       539 ~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~-H~~~V~~v~~spd--g~~LaTg  615 (695)
                             .....+.+|..-|.+++|++|.+.|++|+.|++|++||+.+.......+. |.+.|.|++|+|+  ..+|+++
T Consensus        96 -------~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~  168 (315)
T KOG0279|consen   96 -------ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSA  168 (315)
T ss_pred             -------cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEc
Confidence                   34567889999999999999999999999999999999976444433332 3899999999997  6789999


Q ss_pred             eCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       616 s~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +.|++|++||+++-+. ...+.||.+.|+.+.++|||. ++++|+.||.+.+||++.++++..+ .|...|.+++| +|+
T Consensus       169 s~DktvKvWnl~~~~l-~~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~f-spn  244 (315)
T KOG0279|consen  169 SWDKTVKVWNLRNCQL-RTTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCF-SPN  244 (315)
T ss_pred             cCCceEEEEccCCcch-hhccccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCceeEec-cCCCeEeeEEe-cCC
Confidence            9999999999998664 788999999999999999998 8889999999999999999998887 57789999999 996

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2e-25  Score=231.32  Aligned_cols=177  Identities=26%  Similarity=0.407  Sum_probs=159.1

Q ss_pred             CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 005473          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (695)
Q Consensus       478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~  557 (695)
                      +..++-++.|+|++               ..+++|+-|.++++|+...                   .++..+.++|...
T Consensus       114 H~e~Vl~~~fsp~g---------------~~l~tGsGD~TvR~WD~~T-------------------eTp~~t~KgH~~W  159 (480)
T KOG0271|consen  114 HGEAVLSVQFSPTG---------------SRLVTGSGDTTVRLWDLDT-------------------ETPLFTCKGHKNW  159 (480)
T ss_pred             CCCcEEEEEecCCC---------------ceEEecCCCceEEeeccCC-------------------CCcceeecCCccE
Confidence            45677888888876               6789999999999996533                   2567888999999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE-EEecccCCCeEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCCe
Q 005473          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDTENPDY  631 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~-~~l~~H~~~V~~v~~sp-----dg~~LaTgs~DgtIrvWDl~t~~~  631 (695)
                      |.||+|+|||+.||+|+.||.|++||.++++++ +.+.+|+..|++++|.|     ..++|++++.||.|+|||+..+. 
T Consensus       160 VlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-  238 (480)
T KOG0271|consen  160 VLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-  238 (480)
T ss_pred             EEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-
Confidence            999999999999999999999999999888765 67899999999999976     56799999999999999999754 


Q ss_pred             eEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       632 ~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf  691 (695)
                      |+..+.||+..|+||.|--+  .++++|+.|++|++|+...|.+.+.+++|..+|+.|+.
T Consensus       239 ~~~~lsgHT~~VTCvrwGG~--gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lal  296 (480)
T KOG0271|consen  239 CVRTLSGHTASVTCVRWGGE--GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLAL  296 (480)
T ss_pred             EEEEeccCccceEEEEEcCC--ceEEecCCCceEEEEEccchhHHHhhcccchheeeeec
Confidence            69999999999999999844  48999999999999999999999999999999999987

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=3.7e-25  Score=229.28  Aligned_cols=146  Identities=27%  Similarity=0.461  Sum_probs=138.2

Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 005473          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (695)
Q Consensus       546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWD  625 (695)
                      ++-..+.||.++|.|+.|+|+|+.|++|+.|.+||+||+.+..+..+.++|...|.||+|+|||..||+|+.||+|++||
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd  185 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD  185 (480)
T ss_pred             eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence            55677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeeEEEEecCCCCeEEEEEecC----CCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473          626 TENPDYSLRTFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       626 l~t~~~~l~~~~gh~~~V~sl~fspd----g~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf  691 (695)
                      .+++....+.+.+|..+|++++|.|-    +..+|++++.||.|+|||+..+.|+..+.+|+.+|+||+|
T Consensus       186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrw  255 (480)
T KOG0271|consen  186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRW  255 (480)
T ss_pred             CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEE
Confidence            99998877999999999999999873    2347889999999999999999999999999999999998

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.92  E-value=2.2e-24  Score=241.01  Aligned_cols=189  Identities=23%  Similarity=0.442  Sum_probs=162.7

Q ss_pred             ccCCCCcEEEEeeCCCcEEEEeCCCCC--------C-------CCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC
Q 005473          501 QLTDMDRFVDDGSLDDNVESFLSPDDA--------D-------PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP  565 (695)
Q Consensus       501 ~l~~~~~~lasgS~D~~V~lw~~~~~~--------~-------~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fsp  565 (695)
                      .+.+...++|+|-.|..|++|......        .       ..+......+..   .....+++.+|.++|+.+.|+|
T Consensus       385 ~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~---~~~~~~~L~GH~GPVyg~sFsP  461 (707)
T KOG0263|consen  385 EFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDD---SSGTSRTLYGHSGPVYGCSFSP  461 (707)
T ss_pred             eecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhcccc---CCceeEEeecCCCceeeeeecc
Confidence            345555799999999999999775311        0       011111222222   2234456899999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEE
Q 005473          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS  645 (695)
Q Consensus       566 dg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~s  645 (695)
                      +.++|++++.|++||+|.+.+..++..+.||..+|+++.|+|-|-+|||+|.|++.++|..+... +++.+.||-+.|.|
T Consensus       462 d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~-PlRifaghlsDV~c  540 (707)
T KOG0263|consen  462 DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK-PLRIFAGHLSDVDC  540 (707)
T ss_pred             cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC-chhhhcccccccce
Confidence            99999999999999999999999999999999999999999999999999999999999999744 69999999999999


Q ss_pred             EEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       646 l~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +.|||+.. ++++|+.|.+||+||+.+|.+++.|.||+++|++|+| +|+
T Consensus       541 v~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~-Sp~  588 (707)
T KOG0263|consen  541 VSFHPNSN-YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAF-SPC  588 (707)
T ss_pred             EEECCccc-ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEE-cCC
Confidence            99999977 7789999999999999999999999999999999999 985

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.91  E-value=1.3e-23  Score=232.68  Aligned_cols=209  Identities=25%  Similarity=0.370  Sum_probs=173.5

Q ss_pred             cccCCCCCceEEEEecCCCccccccCCc-------------cCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccC
Q 005473          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQ-------------LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG  540 (695)
Q Consensus       474 l~~s~s~~~s~l~~~~dg~~~la~s~~~-------------l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~  540 (695)
                      +..+++.+++.+.|..+...+.......             -.....|++++|.|.++++|..+...+..          
T Consensus       379 llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~----------  448 (775)
T KOG0319|consen  379 LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETA----------  448 (775)
T ss_pred             EEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccc----------
Confidence            6677899999999966332111110000             13344799999999999999776632211          


Q ss_pred             CCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCe
Q 005473          541 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT  620 (695)
Q Consensus       541 ~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~Dgt  620 (695)
                      ....+..-.+...|...|+||+++|+.++||||+.|++++||+++......++.||+..|+||.|+|....++|+|.|++
T Consensus       449 ~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~T  528 (775)
T KOG0319|consen  449 FPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKT  528 (775)
T ss_pred             ccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCce
Confidence            11222333455789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       621 IrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      |+||.+.+.. |+++|.||...|..+.|-.+|+. |+||+.||.|++|++++++|+.++.+|.+.|++++. +|+
T Consensus       529 vKIW~is~fS-ClkT~eGH~~aVlra~F~~~~~q-liS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~-~~~  600 (775)
T KOG0319|consen  529 VKIWSISTFS-CLKTFEGHTSAVLRASFIRNGKQ-LISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSV-SPL  600 (775)
T ss_pred             EEEEEeccce-eeeeecCccceeEeeeeeeCCcE-EEeccCCCcEEEEeccchhhhhhhhhccceeEEEee-cCc
Confidence            9999999865 79999999999999999999884 559999999999999999999999999999999987 663

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.91  E-value=6.6e-23  Score=205.87  Aligned_cols=172  Identities=19%  Similarity=0.316  Sum_probs=153.9

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      ..+.+++.|.++-+|....+           +...+   .+++.++||...|..|..++||.+.++++.|+++++||+.+
T Consensus        29 ~~l~sasrDk~ii~W~L~~d-----------d~~~G---~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~   94 (315)
T KOG0279|consen   29 DILVSASRDKTIIVWKLTSD-----------DIKYG---VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLAT   94 (315)
T ss_pred             ceEEEcccceEEEEEEeccC-----------ccccC---ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecC
Confidence            78899999999999977654           12222   56788899999999999999999999999999999999999


Q ss_pred             CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecC--CCCeEEEEEecCC-CeEEEEEeCCC
Q 005473          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH--STTVMSLDFHPSK-EDLLCSCDNNS  663 (695)
Q Consensus       587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh--~~~V~sl~fspdg-~~llaSgs~Dg  663 (695)
                      ++..+.|.+|...|.+++|++|.+.+++|+.|++|++|++...  |..++..+  .++|.||.|+|+. ..+|++++.|+
T Consensus        95 g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~--ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dk  172 (315)
T KOG0279|consen   95 GESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV--CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDK  172 (315)
T ss_pred             CcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc--EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCc
Confidence            9999999999999999999999999999999999999999853  44444443  7899999999994 45888999999


Q ss_pred             cEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          664 EIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       664 ~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +|++||+++-+....|.+|.+-|+.|++ +||
T Consensus       173 tvKvWnl~~~~l~~~~~gh~~~v~t~~v-SpD  203 (315)
T KOG0279|consen  173 TVKVWNLRNCQLRTTFIGHSGYVNTVTV-SPD  203 (315)
T ss_pred             eEEEEccCCcchhhccccccccEEEEEE-CCC
Confidence            9999999999999999999999999999 997

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.90  E-value=1.8e-24  Score=225.98  Aligned_cols=183  Identities=18%  Similarity=0.342  Sum_probs=165.4

Q ss_pred             cccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecC
Q 005473          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA  553 (695)
Q Consensus       474 l~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~  553 (695)
                      +...+..+++.+.|++++               .++++|..++.|+.|...                    +..++.+.+
T Consensus       133 ilQaHDs~Vr~m~ws~~g---------------~wmiSgD~gG~iKyWqpn--------------------mnnVk~~~a  177 (464)
T KOG0284|consen  133 ILQAHDSPVRTMKWSHNG---------------TWMISGDKGGMIKYWQPN--------------------MNNVKIIQA  177 (464)
T ss_pred             HhhhhcccceeEEEccCC---------------CEEEEcCCCceEEecccc--------------------hhhhHHhhH
Confidence            445677888899998877               799999999999999432                    233444555


Q ss_pred             CC-CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 005473          554 ST-SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (695)
Q Consensus       554 H~-~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~  632 (695)
                      |. ..|+|++|+|+...|++|++||+|+|||....+....+.+|.-.|.+++|+|...+||+||.|..|++||.+++. |
T Consensus       178 hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~-c  256 (464)
T KOG0284|consen  178 HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS-C  256 (464)
T ss_pred             hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc-h
Confidence            55 889999999999999999999999999999999999999999999999999999999999999999999999976 6


Q ss_pred             EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       633 l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      +.++.+|+..|+.+.|.|+++ +|++++.|..+++||+++-+.+.++++|+..|++++| ||
T Consensus       257 l~tlh~HKntVl~~~f~~n~N-~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~W-hP  316 (464)
T KOG0284|consen  257 LATLHGHKNTVLAVKFNPNGN-WLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTW-HP  316 (464)
T ss_pred             hhhhhhccceEEEEEEcCCCC-eeEEccCCceEEEEehhHhHHHHHhhcchhhheeecc-cc
Confidence            999999999999999999996 6779999999999999999999999999999999999 98

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.90  E-value=2.5e-22  Score=202.78  Aligned_cols=185  Identities=27%  Similarity=0.449  Sum_probs=162.6

Q ss_pred             cccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecC
Q 005473          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA  553 (695)
Q Consensus       474 l~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~  553 (695)
                      +...+...+..+.|.+|.               +.++++|.|+.+-+|+..                   +...++.++-
T Consensus        50 ~LkGH~~Ki~~~~ws~Ds---------------r~ivSaSqDGklIvWDs~-------------------TtnK~haipl   95 (343)
T KOG0286|consen   50 TLKGHLNKIYAMDWSTDS---------------RRIVSASQDGKLIVWDSF-------------------TTNKVHAIPL   95 (343)
T ss_pred             EecccccceeeeEecCCc---------------CeEEeeccCCeEEEEEcc-------------------cccceeEEec
Confidence            344455678888998877               788999999999999553                   3345667777


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC------eEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 005473          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESF------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (695)
Q Consensus       554 H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~------~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~  627 (695)
                      ....|..|+|+|.|+++|+|+-|..+.||++.+.      ...+.+.+|++.+.|+.|-+ ...|+|+|.|.+.-+||++
T Consensus        96 ~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie  174 (343)
T KOG0286|consen   96 PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIE  174 (343)
T ss_pred             CceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcc
Confidence            7889999999999999999999999999999754      45577899999999999987 5789999999999999999


Q ss_pred             CCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       628 t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ++.. +..|.||.+.|.++++.|.....|++|+.|+..++||+|.+.|+.+|.+|...|.+|+| +|+
T Consensus       175 ~g~~-~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~f-fP~  240 (343)
T KOG0286|consen  175 TGQQ-TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRF-FPS  240 (343)
T ss_pred             cceE-EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEE-ccC
Confidence            9775 89999999999999999944447779999999999999999999999999999999999 996

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.90  E-value=2.3e-22  Score=226.30  Aligned_cols=182  Identities=30%  Similarity=0.516  Sum_probs=159.2

Q ss_pred             CCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCe
Q 005473          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV  558 (695)
Q Consensus       479 s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V  558 (695)
                      ...+.++.|++++               .++++++.|+.+++|......+                 .....+.+|...|
T Consensus       159 ~~sv~~~~fs~~g---------------~~l~~~~~~~~i~~~~~~~~~~-----------------~~~~~l~~h~~~v  206 (456)
T KOG0266|consen  159 CPSVTCVDFSPDG---------------RALAAASSDGLIRIWKLEGIKS-----------------NLLRELSGHTRGV  206 (456)
T ss_pred             cCceEEEEEcCCC---------------CeEEEccCCCcEEEeecccccc-----------------hhhccccccccce
Confidence            4566677777777               6689999999999996622210                 2345558999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEC-CCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 005473          559 ESCHFSPDGKLLATGGHDKKAVLWCT-ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (695)
Q Consensus       559 ~~v~fspdg~~LaSgs~Dg~V~IWDl-~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~  637 (695)
                      .+|+|+|+++++++|+.|++|+|||+ ..+.+++++.+|...|++++|+|+++++++|+.|++|+|||+++++ ++..+.
T Consensus       207 ~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~-~~~~l~  285 (456)
T KOG0266|consen  207 SDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE-CVRKLK  285 (456)
T ss_pred             eeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe-EEEeee
Confidence            99999999999999999999999999 5668999999999999999999999999999999999999999954 699999


Q ss_pred             cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe--EEEEEecCCCc--EEEEEEeCCC
Q 005473          638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKNFFES--FVSVRVVQPR  695 (695)
Q Consensus       638 gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~--~v~~~~~h~~~--VtsVaf~sPd  695 (695)
                      +|.+.|++++|++++. +|++++.|+.|+|||+.++.  |+..+.++...  |+++.| +|+
T Consensus       286 ~hs~~is~~~f~~d~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~f-sp~  345 (456)
T KOG0266|consen  286 GHSDGISGLAFSPDGN-LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQF-SPN  345 (456)
T ss_pred             ccCCceEEEEECCCCC-EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEE-CCC
Confidence            9999999999999998 56678889999999999999  77888877665  999999 986

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.90  E-value=7.3e-22  Score=199.38  Aligned_cols=217  Identities=25%  Similarity=0.332  Sum_probs=177.8

Q ss_pred             ccccCCCCCceEEEEecCCCcc-ccccCC-------ccCCCCcEEEEeeCCCcEEEEeCCCC-CC---------------
Q 005473          473 TLQHNGASSKSLLMFGSDGMGS-LTSAPN-------QLTDMDRFVDDGSLDDNVESFLSPDD-AD---------------  528 (695)
Q Consensus       473 ~l~~s~s~~~s~l~~~~dg~~~-la~s~~-------~l~~~~~~lasgS~D~~V~lw~~~~~-~~---------------  528 (695)
                      ...++++-+..++.|....... -+++-.       .+.+...|||+|+.|....+|..... .+               
T Consensus        68 r~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgy  147 (343)
T KOG0286|consen   68 RRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGY  147 (343)
T ss_pred             CeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccce
Confidence            3455667788888888765411 111111       14666799999999999999977532 11               


Q ss_pred             ---------------CCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEE
Q 005473          529 ---------------PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKST  592 (695)
Q Consensus       529 ---------------~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~t~~~~~~  592 (695)
                                     ..|.....||++++   ..+..+.+|.+-|.++.++| +++.+++|+.|+..+|||++.+.++.+
T Consensus       148 lScC~f~dD~~ilT~SGD~TCalWDie~g---~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qt  224 (343)
T KOG0286|consen  148 LSCCRFLDDNHILTGSGDMTCALWDIETG---QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQT  224 (343)
T ss_pred             eEEEEEcCCCceEecCCCceEEEEEcccc---eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEe
Confidence                           11223356777777   45667789999999999999 999999999999999999999999999


Q ss_pred             ecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec--CCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 005473          593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI  670 (695)
Q Consensus       593 l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~g--h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl  670 (695)
                      |.+|.+.|.+|+|.|+|.-|+||++|++.|+||+|.... +..|..  ....|++|+|+-.|+ ||++|..|..+.+||.
T Consensus       225 F~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~-~a~ys~~~~~~gitSv~FS~SGR-lLfagy~d~~c~vWDt  302 (343)
T KOG0286|consen  225 FEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE-LAVYSHDSIICGITSVAFSKSGR-LLFAGYDDFTCNVWDT  302 (343)
T ss_pred             ecccccccceEEEccCCCeeeecCCCceeEEEeecCCcE-EeeeccCcccCCceeEEEccccc-EEEeeecCCceeEeec
Confidence            999999999999999999999999999999999998765 555552  235799999999998 6668899999999999


Q ss_pred             CCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          671 NNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       671 ~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      -.++.+..+.+|.+.|++|.. +||
T Consensus       303 lk~e~vg~L~GHeNRvScl~~-s~D  326 (343)
T KOG0286|consen  303 LKGERVGVLAGHENRVSCLGV-SPD  326 (343)
T ss_pred             cccceEEEeeccCCeeEEEEE-CCC
Confidence            999999999999999999998 986

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.90  E-value=1e-22  Score=209.83  Aligned_cols=171  Identities=20%  Similarity=0.350  Sum_probs=157.4

Q ss_pred             CCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005473          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (695)
Q Consensus       503 ~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IW  582 (695)
                      .+.+.|+++|+.|+++++|+...+                   ....++.||...|..|++|+-..||++|+.|+.|+.|
T Consensus       160 dP~n~wf~tgs~DrtikIwDlatg-------------------~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw  220 (460)
T KOG0285|consen  160 DPGNEWFATGSADRTIKIWDLATG-------------------QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW  220 (460)
T ss_pred             CCCceeEEecCCCceeEEEEcccC-------------------eEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence            334589999999999999976544                   3456788999999999999999999999999999999


Q ss_pred             ECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC
Q 005473          583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (695)
Q Consensus       583 Dl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D  662 (695)
                      |++..+.++.+.||-+.|+|++.+|.-..|+||+.|.++||||+++.. .+.++.||...|.+|.+.|..+. +++|+.|
T Consensus       221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~GH~~~V~~V~~~~~dpq-vit~S~D  298 (460)
T KOG0285|consen  221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLSGHTNPVASVMCQPTDPQ-VITGSHD  298 (460)
T ss_pred             echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-eEEEecCCCCcceeEEeecCCCc-eEEecCC
Confidence            999999999999999999999999999999999999999999999855 59999999999999999998774 5599999


Q ss_pred             CcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          663 SEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       663 g~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ++|++||++.|+...++..|...|.+++. ||+
T Consensus       299 ~tvrlWDl~agkt~~tlt~hkksvral~l-hP~  330 (460)
T KOG0285|consen  299 STVRLWDLRAGKTMITLTHHKKSVRALCL-HPK  330 (460)
T ss_pred             ceEEEeeeccCceeEeeecccceeeEEec-CCc
Confidence            99999999999999999999999999999 985

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.89  E-value=3.9e-22  Score=211.71  Aligned_cols=179  Identities=21%  Similarity=0.401  Sum_probs=158.5

Q ss_pred             CCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeE
Q 005473          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE  559 (695)
Q Consensus       480 ~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~  559 (695)
                      .+++.+.|+.+|               .++++|+.||.+++|..+..                    .+.++..|+++|.
T Consensus       236 kdVT~L~Wn~~G---------------~~LatG~~~G~~riw~~~G~--------------------l~~tl~~HkgPI~  280 (524)
T KOG0273|consen  236 KDVTSLDWNNDG---------------TLLATGSEDGEARIWNKDGN--------------------LISTLGQHKGPIF  280 (524)
T ss_pred             CCcceEEecCCC---------------CeEEEeecCcEEEEEecCch--------------------hhhhhhccCCceE
Confidence            488999999988               78999999999999965332                    3456678999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCe-----------------------------------------EEEEecccCC
Q 005473          560 SCHFSPDGKLLATGGHDKKAVLWCTESFT-----------------------------------------VKSTLEEHTQ  598 (695)
Q Consensus       560 ~v~fspdg~~LaSgs~Dg~V~IWDl~t~~-----------------------------------------~~~~l~~H~~  598 (695)
                      ++.|+.+|.||++++.|+++.|||..+++                                         ++.++.+|.+
T Consensus       281 slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g  360 (524)
T KOG0273|consen  281 SLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHG  360 (524)
T ss_pred             EEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccC
Confidence            99999999999999999999999985432                                         3445668999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCC--------eEEEEEeCCCcEEEEEC
Q 005473          599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE--------DLLCSCDNNSEIRYWSI  670 (695)
Q Consensus       599 ~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~--------~llaSgs~Dg~IriWDl  670 (695)
                      .|.++.|.|.+.+|+|+|+|++++||...... ++..+.+|...|..+.|+|+|+        ..+++++.|++|++||+
T Consensus       361 ~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~-~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv  439 (524)
T KOG0273|consen  361 EVNALKWNPTGSLLASCSDDGTLKIWSMGQSN-SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDV  439 (524)
T ss_pred             ceEEEEECCCCceEEEecCCCeeEeeecCCCc-chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEc
Confidence            99999999999999999999999999998755 5889999999999999999763        36789999999999999


Q ss_pred             CCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          671 NNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       671 ~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ..|.|+.+|..|..+|.+|+| +|+
T Consensus       440 ~~gv~i~~f~kH~~pVysvaf-S~~  463 (524)
T KOG0273|consen  440 ESGVPIHTLMKHQEPVYSVAF-SPN  463 (524)
T ss_pred             cCCceeEeeccCCCceEEEEe-cCC
Confidence            999999999999999999999 986

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.89  E-value=7.3e-22  Score=222.17  Aligned_cols=161  Identities=27%  Similarity=0.484  Sum_probs=146.1

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      .++++++.|.++++|+....                  ...++++++|...|+||+|+|+|++|++|+.|++|+|||+++
T Consensus       216 ~~l~s~s~D~tiriwd~~~~------------------~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~  277 (456)
T KOG0266|consen  216 SYLLSGSDDKTLRIWDLKDD------------------GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT  277 (456)
T ss_pred             cEEEEecCCceEEEeeccCC------------------CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC
Confidence            69999999999999966222                  256788999999999999999999999999999999999999


Q ss_pred             CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-eEEEEecCCCC--eEEEEEecCCCeEEEEEeCCC
Q 005473          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTT--VMSLDFHPSKEDLLCSCDNNS  663 (695)
Q Consensus       587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~-~l~~~~gh~~~--V~sl~fspdg~~llaSgs~Dg  663 (695)
                      ++++..+.+|.+.|++++|++++.+|++++.|+.|+|||+.++.. ++..+.++...  |+++.|+|++.+ ++++..|+
T Consensus       278 ~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~-ll~~~~d~  356 (456)
T KOG0266|consen  278 GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKY-LLSASLDR  356 (456)
T ss_pred             CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcE-EEEecCCC
Confidence            999999999999999999999999999999999999999998774 46777777766  999999999985 55888899


Q ss_pred             cEEEEECCCCeEEEEEecCCCcE
Q 005473          664 EIRYWSINNGSCAGVFKNFFESF  686 (695)
Q Consensus       664 ~IriWDl~tg~~v~~~~~h~~~V  686 (695)
                      .|++||++.+.++..+.+|...+
T Consensus       357 ~~~~w~l~~~~~~~~~~~~~~~~  379 (456)
T KOG0266|consen  357 TLKLWDLRSGKSVGTYTGHSNLV  379 (456)
T ss_pred             eEEEEEccCCcceeeecccCCcc
Confidence            99999999999999999998764

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=7.2e-22  Score=204.26  Aligned_cols=169  Identities=20%  Similarity=0.414  Sum_probs=154.4

Q ss_pred             CCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005473          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (695)
Q Consensus       504 ~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWD  583 (695)
                      +...++++++.|.+|+.|....+                   -+++++.+|...|..+..+.||.++|+|+.|-+|++|-
T Consensus       203 P~gd~ilS~srD~tik~We~~tg-------------------~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~  263 (406)
T KOG0295|consen  203 PLGDHILSCSRDNTIKAWECDTG-------------------YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWV  263 (406)
T ss_pred             ecCCeeeecccccceeEEecccc-------------------eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEE
Confidence            33488999999999999965433                   47889999999999999999999999999999999999


Q ss_pred             CCCCeEEEEecccCCCeEEEEEcCC----------C-----CEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEE
Q 005473          584 TESFTVKSTLEEHTQWITDVRFSPS----------L-----SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF  648 (695)
Q Consensus       584 l~t~~~~~~l~~H~~~V~~v~~spd----------g-----~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~f  648 (695)
                      +.++.|...+++|..+|.|++|.|.          +     .++++++.|++||+||+.++. |+.++.||..+|..++|
T Consensus       264 ~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~-cL~tL~ghdnwVr~~af  342 (406)
T KOG0295|consen  264 VATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM-CLFTLVGHDNWVRGVAF  342 (406)
T ss_pred             eccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe-EEEEEecccceeeeeEE
Confidence            9999999999999999999999763          2     388999999999999999976 69999999999999999


Q ss_pred             ecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       649 spdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      +|.|+ +|++|.+|++++|||+++++|+.++.+|..-|++++| |-
T Consensus       343 ~p~Gk-yi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDf-h~  386 (406)
T KOG0295|consen  343 SPGGK-YILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDF-HK  386 (406)
T ss_pred             cCCCe-EEEEEecCCcEEEEEeccceeeeccCCCcceeEEEec-CC
Confidence            99998 5569999999999999999999999999999999999 63

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=3.8e-21  Score=192.57  Aligned_cols=183  Identities=23%  Similarity=0.388  Sum_probs=156.5

Q ss_pred             CceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEe-cCCCCCeE
Q 005473          481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PASTSKVE  559 (695)
Q Consensus       481 ~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l-~~H~~~V~  559 (695)
                      .+-.+.|+|...              ..+++|+.|+.|++|....                +..+.+...+ .+|+..|.
T Consensus        16 r~W~~awhp~~g--------------~ilAscg~Dk~vriw~~~~----------------~~s~~ck~vld~~hkrsVR   65 (312)
T KOG0645|consen   16 RVWSVAWHPGKG--------------VILASCGTDKAVRIWSTSS----------------GDSWTCKTVLDDGHKRSVR   65 (312)
T ss_pred             cEEEEEeccCCc--------------eEEEeecCCceEEEEecCC----------------CCcEEEEEeccccchheee
Confidence            466778887521              5899999999999996542                1123444444 37999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECC--CCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--eeEEE
Q 005473          560 SCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRT  635 (695)
Q Consensus       560 ~v~fspdg~~LaSgs~Dg~V~IWDl~--t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~--~~l~~  635 (695)
                      +|+|+|.|++|++|+.|.++.||.-.  ..+++.+++||...|.|++|+++|++|||+++|+.|.||.+..+.  .|+..
T Consensus        66 svAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aV  145 (312)
T KOG0645|consen   66 SVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAV  145 (312)
T ss_pred             eeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEee
Confidence            99999999999999999999999754  457889999999999999999999999999999999999998543  47889


Q ss_pred             EecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC-C--CeEEEEEecCCCcEEEEEEeCCC
Q 005473          636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-N--GSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       636 ~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~-t--g~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +.+|...|..+.|||... ||++|+.|.+|++|+-. .  -.|+.++.+|...|.+++| +|.
T Consensus       146 L~~HtqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F-~~~  206 (312)
T KOG0645|consen  146 LQEHTQDVKHVIWHPTED-LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAF-DNI  206 (312)
T ss_pred             eccccccccEEEEcCCcc-eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEe-cCC
Confidence            999999999999999865 88899999999999876 2  3799999999999999999 873

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.88  E-value=8.8e-23  Score=213.39  Aligned_cols=201  Identities=22%  Similarity=0.282  Sum_probs=171.1

Q ss_pred             ccccCCCCCceEEEEecCCCcc--------ccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCce
Q 005473          473 TLQHNGASSKSLLMFGSDGMGS--------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT  544 (695)
Q Consensus       473 ~l~~s~s~~~s~l~~~~dg~~~--------la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~  544 (695)
                      ...+++.....+..|.+.-...        -++..-.+.+.+..++++|.|++|++|++...                  
T Consensus       151 ~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~------------------  212 (464)
T KOG0284|consen  151 TWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP------------------  212 (464)
T ss_pred             CEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC------------------
Confidence            4455677777888887753210        11111123334477799999999999976433                  


Q ss_pred             eeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 005473          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (695)
Q Consensus       545 ~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvW  624 (695)
                       ++...|++|.--|.||+|+|.-.+||+|+.|..|++||.+++.|+.++.+|+..|..+.|+|++++|+|+|.|..+++|
T Consensus       213 -kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~  291 (464)
T KOG0284|consen  213 -KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVF  291 (464)
T ss_pred             -chhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEE
Confidence             3345668999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe-cCCCcEEEEEEeCC
Q 005473          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-NFFESFVSVRVVQP  694 (695)
Q Consensus       625 Dl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~-~h~~~VtsVaf~sP  694 (695)
                      |+++.+. +.++.+|+..|+++.|+|-...+|++|+.||.|.+|.+...+++..+. +|...|++++| ||
T Consensus       292 DiR~mkE-l~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~-hP  360 (464)
T KOG0284|consen  292 DIRTMKE-LFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAY-HP  360 (464)
T ss_pred             ehhHhHH-HHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeec-cc
Confidence            9997665 899999999999999999999999999999999999999778887777 89999999999 98

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.88  E-value=2.1e-21  Score=206.24  Aligned_cols=194  Identities=21%  Similarity=0.330  Sum_probs=160.1

Q ss_pred             CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCC---------C-CCc-------c-------
Q 005473          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDAD---------P-RDR-------V-------  533 (695)
Q Consensus       478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~---------~-~~~-------~-------  533 (695)
                      +..++..+.|..+|               .|+++++.|+++-+|+...+..         + -|.       +       
T Consensus       275 HkgPI~slKWnk~G---------------~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~  339 (524)
T KOG0273|consen  275 HKGPIFSLKWNKKG---------------TYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDG  339 (524)
T ss_pred             cCCceEEEEEcCCC---------------CEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCc
Confidence            44566666666655               6889999999999998755421         1 000       0       


Q ss_pred             -ccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCC---
Q 005473          534 -GRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---  609 (695)
Q Consensus       534 -~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg---  609 (695)
                       .++..+   -..+++.++.+|.++|.++.|+|.|.+|++|++|++++||.+....+...+.+|...|+.+.|+|+|   
T Consensus       340 ~i~V~kv---~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~  416 (524)
T KOG0273|consen  340 CIHVCKV---GEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVT  416 (524)
T ss_pred             eEEEEEe---cCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCcc
Confidence             111111   1225678889999999999999999999999999999999999999999999999999999999965   


Q ss_pred             ------CEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCC
Q 005473          610 ------SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFF  683 (695)
Q Consensus       610 ------~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~  683 (695)
                            ..+++++.|++|++||+..+. |+.+|..|...|++|+|+|+|+ ++++|+.||.|.||++++++.++.+.+. 
T Consensus       417 ~n~~~~~~l~sas~dstV~lwdv~~gv-~i~~f~kH~~pVysvafS~~g~-ylAsGs~dg~V~iws~~~~~l~~s~~~~-  493 (524)
T KOG0273|consen  417 SNPNMNLMLASASFDSTVKLWDVESGV-PIHTLMKHQEPVYSVAFSPNGR-YLASGSLDGCVHIWSTKTGKLVKSYQGT-  493 (524)
T ss_pred             CCCcCCceEEEeecCCeEEEEEccCCc-eeEeeccCCCceEEEEecCCCc-EEEecCCCCeeEeccccchheeEeecCC-
Confidence                  368999999999999999865 6999999999999999999998 7779999999999999999999999755 


Q ss_pred             CcEEEEEEeC
Q 005473          684 ESFVSVRVVQ  693 (695)
Q Consensus       684 ~~VtsVaf~s  693 (695)
                      +.|..|+| +
T Consensus       494 ~~Ifel~W-n  502 (524)
T KOG0273|consen  494 GGIFELCW-N  502 (524)
T ss_pred             CeEEEEEE-c
Confidence            56888888 5

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.87  E-value=2.7e-21  Score=191.49  Aligned_cols=145  Identities=24%  Similarity=0.415  Sum_probs=127.2

Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--------------------------------------
Q 005473          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--------------------------------------  587 (695)
Q Consensus       546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~--------------------------------------  587 (695)
                      .++.++.+|+..|++|.|..+|+++++|++||+|+|||++..                                      
T Consensus        74 ~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl  153 (311)
T KOG0315|consen   74 NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDL  153 (311)
T ss_pred             CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEc
Confidence            378889999999999999999999999999999999998631                                      


Q ss_pred             ----------------------------------------------------eEEEEecccCCCeEEEEEcCCCCEEEEE
Q 005473          588 ----------------------------------------------------TVKSTLEEHTQWITDVRFSPSLSRLATS  615 (695)
Q Consensus       588 ----------------------------------------------------~~~~~l~~H~~~V~~v~~spdg~~LaTg  615 (695)
                                                                          +++..+..|.+.|..+.++|++++|+|+
T Consensus       154 ~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~  233 (311)
T KOG0315|consen  154 GENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATC  233 (311)
T ss_pred             cCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEee
Confidence                                                                1122334688899999999999999999


Q ss_pred             eCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473          616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       616 s~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf  691 (695)
                      |.|++++||++++.-+....+.+|..+|+.++|+.||. +|++|+.|+.+|+||+..++.++.+.+|..+..|++.
T Consensus       234 ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~-YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l  308 (311)
T KOG0315|consen  234 SSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGE-YLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL  308 (311)
T ss_pred             cCCceEEEEecCCceeeEEEeecCCceEEeeeeccCcc-EEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence            99999999999987344678899999999999999998 5669999999999999999999999999988888876

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.87  E-value=1.1e-22  Score=206.89  Aligned_cols=184  Identities=24%  Similarity=0.380  Sum_probs=159.0

Q ss_pred             CCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeE
Q 005473          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE  559 (695)
Q Consensus       480 ~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~  559 (695)
                      ....+..|+||+               .|+++||.||.|++|+...+....|           ..+..-..+.-+.++|.
T Consensus       214 Sh~EcA~FSPDg---------------qyLvsgSvDGFiEVWny~~GKlrKD-----------LkYQAqd~fMMmd~aVl  267 (508)
T KOG0275|consen  214 SHVECARFSPDG---------------QYLVSGSVDGFIEVWNYTTGKLRKD-----------LKYQAQDNFMMMDDAVL  267 (508)
T ss_pred             cchhheeeCCCC---------------ceEeeccccceeeeehhccchhhhh-----------hhhhhhcceeecccceE
Confidence            355677888877               8999999999999998876643222           22223344566889999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec-ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec
Q 005473          560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG  638 (695)
Q Consensus       560 ~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~-~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~g  638 (695)
                      |+.|+.|...||+|+.||+|+||.+++|.|++.|. +|+..|+|+.|+.|+..+++++.|.+|||--+++++ +++.|.|
T Consensus       268 ci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK-~LKEfrG  346 (508)
T KOG0275|consen  268 CISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK-CLKEFRG  346 (508)
T ss_pred             EEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch-hHHHhcC
Confidence            99999999999999999999999999999999996 899999999999999999999999999999999977 5999999


Q ss_pred             CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec--CCCcEEEEEE
Q 005473          639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKN--FFESFVSVRV  691 (695)
Q Consensus       639 h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~--h~~~VtsVaf  691 (695)
                      |++.|+.+.|.+||.+++ +++.||+|+||+.++.+|+.+|+.  ...+|.+|-.
T Consensus       347 HsSyvn~a~ft~dG~~ii-saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~  400 (508)
T KOG0275|consen  347 HSSYVNEATFTDDGHHII-SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVIL  400 (508)
T ss_pred             ccccccceEEcCCCCeEE-EecCCccEEEecCcchhhhhhccCCCCcccceeEEE
Confidence            999999999999998665 999999999999999999999994  4456666654

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=2.9e-21  Score=191.81  Aligned_cols=173  Identities=19%  Similarity=0.292  Sum_probs=153.4

Q ss_pred             CCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEE
Q 005473          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVL  581 (695)
Q Consensus       503 ~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~-~LaSgs~Dg~V~I  581 (695)
                      ..+++.+++++-||++++|+...                  ...++..++.|...|.+|.|++..+ .+++++.|++|++
T Consensus        70 e~~e~~~~~a~GDGSLrl~d~~~------------------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKL  131 (311)
T KOG0277|consen   70 ENHENQVIAASGDGSLRLFDLTM------------------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKL  131 (311)
T ss_pred             CCCcceEEEEecCceEEEeccCC------------------CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEe
Confidence            34568899999999999996322                  2247888999999999999999544 6778899999999


Q ss_pred             EECCCCeEEEEecccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEe
Q 005473          582 WCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (695)
Q Consensus       582 WDl~t~~~~~~l~~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs  660 (695)
                      ||....+.+.++.+|...|+...|+| ..++++++|.|+++++||++.....+. +..|...|.|++|+.-..+++++|+
T Consensus       132 W~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~  210 (311)
T KOG0277|consen  132 WDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGG  210 (311)
T ss_pred             ecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecC
Confidence            99999999999999999999999999 578999999999999999998876444 8899999999999988888999999


Q ss_pred             CCCcEEEEECCC-CeEEEEEecCCCcEEEEEEeCCC
Q 005473          661 NNSEIRYWSINN-GSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       661 ~Dg~IriWDl~t-g~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      .|+.||+||+++ ..++.++.+|.-.|..|+| +|.
T Consensus       211 vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~-Sph  245 (311)
T KOG0277|consen  211 VDNLVRGWDIRNLRTPLFELNGHGLAVRKVKF-SPH  245 (311)
T ss_pred             CCceEEEEehhhccccceeecCCceEEEEEec-Ccc
Confidence            999999999997 5688999999999999999 983

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.86  E-value=4.4e-21  Score=203.54  Aligned_cols=176  Identities=23%  Similarity=0.387  Sum_probs=153.6

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTE  585 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspd-g~~LaSgs~Dg~V~IWDl~  585 (695)
                      -.+++++.|..|++|+......            ......+...+.+|.+.|..|+|++- ..+|++++.|+.+.|||++
T Consensus       191 g~Lls~~~d~~i~lwdi~~~~~------------~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R  258 (422)
T KOG0264|consen  191 GTLLSGSDDHTICLWDINAESK------------EDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTR  258 (422)
T ss_pred             eeEeeccCCCcEEEEecccccc------------CCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcC
Confidence            5678999999999998754421            12334566778999999999999994 5588999999999999999


Q ss_pred             --CCeEEEEecccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC
Q 005473          586 --SFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (695)
Q Consensus       586 --t~~~~~~l~~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D  662 (695)
                        +.++.....+|.+.|+|++|+| ++.+|||||.|++|++||+|+...++.++.+|...|.+|.|+|+...+|++++.|
T Consensus       259 ~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D  338 (422)
T KOG0264|consen  259 SNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTD  338 (422)
T ss_pred             CCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccC
Confidence              6777788899999999999999 5678899999999999999999889999999999999999999999999999999


Q ss_pred             CcEEEEECCC-C-------------eEEEEEecCCCcEEEEEEeCCC
Q 005473          663 SEIRYWSINN-G-------------SCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       663 g~IriWDl~t-g-------------~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +.+.|||+.. |             +++....||+..|..+.| +|.
T Consensus       339 ~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsW-np~  384 (422)
T KOG0264|consen  339 RRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSW-NPN  384 (422)
T ss_pred             CcEEEEeccccccccChhhhccCCcceeEEecCcccccccccC-CCC
Confidence            9999999963 1             345777899999999999 985

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.86  E-value=6.8e-21  Score=193.05  Aligned_cols=181  Identities=17%  Similarity=0.310  Sum_probs=155.2

Q ss_pred             CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 005473          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (695)
Q Consensus       478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~  557 (695)
                      +...+..+.|+|++               .++++|+.|..|.+|.+..+.                  .-+..+++|++.
T Consensus        46 h~geI~~~~F~P~g---------------s~~aSgG~Dr~I~LWnv~gdc------------------eN~~~lkgHsgA   92 (338)
T KOG0265|consen   46 HKGEIYTIKFHPDG---------------SCFASGGSDRAIVLWNVYGDC------------------ENFWVLKGHSGA   92 (338)
T ss_pred             CcceEEEEEECCCC---------------CeEeecCCcceEEEEeccccc------------------cceeeeccccce
Confidence            44688899999977               688999999999999754332                  223556799999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCeeEEEE
Q 005473          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTF  636 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg-~~LaTgs~DgtIrvWDl~t~~~~l~~~  636 (695)
                      |..+.|..|++.|++++.|++|+.||++++++++.+++|.+.|..+.-+.-| .++.+|+.||+++|||+|+.. +++++
T Consensus        93 VM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-~~~t~  171 (338)
T KOG0265|consen   93 VMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-AIKTF  171 (338)
T ss_pred             eEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc-hhhcc
Confidence            9999999999999999999999999999999999999999999999844334 356788999999999999744 57777


Q ss_pred             ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       637 ~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      .. .-.++++.|..++..++ +|+-|+.|++||++.+.++.++.||.++|+.|.. +|+
T Consensus       172 ~~-kyqltAv~f~d~s~qv~-sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsl-s~~  227 (338)
T KOG0265|consen  172 EN-KYQLTAVGFKDTSDQVI-SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSL-SRY  227 (338)
T ss_pred             cc-ceeEEEEEeccccccee-eccccCceeeeccccCcceEEeecccCceeeEEe-ccC
Confidence            53 45799999998888655 9999999999999999999999999999999987 763

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.86  E-value=8.1e-21  Score=197.40  Aligned_cols=185  Identities=22%  Similarity=0.308  Sum_probs=154.8

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCCC-CCCccc-----cccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 005473          505 MDRFVDDGSLDDNVESFLSPDDAD-PRDRVG-----RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK  578 (695)
Q Consensus       505 ~~~~lasgS~D~~V~lw~~~~~~~-~~~~~~-----~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~  578 (695)
                      ....+++||+|.++++|....+.+ ......     .......+..-.++.++.||+.+|.+|.|++ ...+++++.|.+
T Consensus       204 sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHT  282 (423)
T KOG0313|consen  204 SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHT  282 (423)
T ss_pred             CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccce
Confidence            346789999999999998332211 110000     1111122334567889999999999999997 778999999999


Q ss_pred             EEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--eeEEEEecCCCCeEEEEEecCCCeEE
Q 005473          579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLL  656 (695)
Q Consensus       579 V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~--~~l~~~~gh~~~V~sl~fspdg~~ll  656 (695)
                      |++||+.++.++.++.+ ...++|+.++|...+|++||.|..|++||.+++.  .....|.||..+|.++.|+|...+.|
T Consensus       283 Ik~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~  361 (423)
T KOG0313|consen  283 IKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQL  361 (423)
T ss_pred             EEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEE
Confidence            99999999999988875 5678999999999999999999999999998765  44578999999999999999999999


Q ss_pred             EEEeCCCcEEEEECCCCe-EEEEEecCCCcEEEEEE
Q 005473          657 CSCDNNSEIRYWSINNGS-CAGVFKNFFESFVSVRV  691 (695)
Q Consensus       657 aSgs~Dg~IriWDl~tg~-~v~~~~~h~~~VtsVaf  691 (695)
                      ++|+.|+++++||+|+.+ ++..+.+|.+.|.++.|
T Consensus       362 ~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW  397 (423)
T KOG0313|consen  362 VSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDW  397 (423)
T ss_pred             EEEecCCeEEEEEeccCCCcceeeccCCceEEEEec
Confidence            999999999999999877 99999999999999998

>PTZ00421 coronin; Provisional

Probab=99.86  E-value=7e-20  Score=206.88  Aligned_cols=193  Identities=15%  Similarity=0.161  Sum_probs=151.1

Q ss_pred             ccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 005473          475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS  554 (695)
Q Consensus       475 ~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H  554 (695)
                      ...+...+..+.|+|...              .++++|+.|++|++|+...+...            .....++..+.+|
T Consensus        71 l~GH~~~V~~v~fsP~d~--------------~~LaSgS~DgtIkIWdi~~~~~~------------~~~~~~l~~L~gH  124 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDP--------------QKLFTASEDGTIMGWGIPEEGLT------------QNISDPIVHLQGH  124 (493)
T ss_pred             EeCCCCCEEEEEEcCCCC--------------CEEEEEeCCCEEEEEecCCCccc------------cccCcceEEecCC
Confidence            344566788888887332              68999999999999987543210            0112356678899


Q ss_pred             CCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE
Q 005473          555 TSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (695)
Q Consensus       555 ~~~V~~v~fspdg-~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l  633 (695)
                      ...|.+|+|+|++ .+|++|+.|++|+|||+++++.+..+.+|...|.+++|+|++.+|++++.|++|+|||++++.. +
T Consensus       125 ~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~-v  203 (493)
T PTZ00421        125 TKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI-V  203 (493)
T ss_pred             CCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE-E
Confidence            9999999999985 6999999999999999999999999999999999999999999999999999999999998774 7


Q ss_pred             EEEecCCCC-eEEEEEecCCCeEEEEE---eCCCcEEEEECCCCe-EEEEEecCC-CcEEEEEEeCCC
Q 005473          634 RTFTGHSTT-VMSLDFHPSKEDLLCSC---DNNSEIRYWSINNGS-CAGVFKNFF-ESFVSVRVVQPR  695 (695)
Q Consensus       634 ~~~~gh~~~-V~sl~fspdg~~llaSg---s~Dg~IriWDl~tg~-~v~~~~~h~-~~VtsVaf~sPd  695 (695)
                      ..+.+|.+. +..+.|.+++..++++|   +.|+.|++||+++.. ++..+..+. ..+....| +|+
T Consensus       204 ~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~-d~d  270 (493)
T PTZ00421        204 SSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFF-DED  270 (493)
T ss_pred             EEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEE-cCC
Confidence            788888765 45778999887666555   348999999998754 444444343 33444445 654

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.86  E-value=1.9e-21  Score=200.56  Aligned_cols=148  Identities=27%  Similarity=0.477  Sum_probs=140.0

Q ss_pred             eeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 005473          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV  623 (695)
Q Consensus       544 ~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrv  623 (695)
                      .++....+.+|.+.|.||++.|.+.+|++|+.|++++|||+.++++..++.||...|..+++++-..+|++++.|+.|++
T Consensus       140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC  219 (460)
T KOG0285|consen  140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC  219 (460)
T ss_pred             cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence            45667788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       624 WDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      ||+...+. ++.+.||-+.|.|++.+|.-+ +|++|+.|.+|||||+++...+.++.||+.+|.+|.| .|
T Consensus       220 wDLe~nkv-IR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~-~~  287 (460)
T KOG0285|consen  220 WDLEYNKV-IRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMC-QP  287 (460)
T ss_pred             Eechhhhh-HHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEecCCCCcceeEEe-ec
Confidence            99998665 899999999999999999976 7779999999999999999999999999999999998 65

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=5.9e-21  Score=207.98  Aligned_cols=173  Identities=23%  Similarity=0.395  Sum_probs=155.8

Q ss_pred             cCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 005473          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL  581 (695)
Q Consensus       502 l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~I  581 (695)
                      +....+|+++|+.|..|++|..+.                   ...++.+.+|.+.|.|++.+|.--+++|+++|-+|++
T Consensus        63 fiaRknWiv~GsDD~~IrVfnynt-------------------~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKl  123 (794)
T KOG0276|consen   63 FIARKNWIVTGSDDMQIRVFNYNT-------------------GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKL  123 (794)
T ss_pred             eeeccceEEEecCCceEEEEeccc-------------------ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEE
Confidence            556668999999999999996543                   3678899999999999999999999999999999999


Q ss_pred             EECCC-CeEEEEecccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCC-CeEEEE
Q 005473          582 WCTES-FTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-EDLLCS  658 (695)
Q Consensus       582 WDl~t-~~~~~~l~~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg-~~llaS  658 (695)
                      ||.+. ..|..+++||+..|.+|+|.| |.+.++++|-|++|+||.+.... +..++.||...|.||+|-+.| +.++++
T Consensus       124 W~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~-~nfTl~gHekGVN~Vdyy~~gdkpylIs  202 (794)
T KOG0276|consen  124 WDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH-PNFTLEGHEKGVNCVDYYTGGDKPYLIS  202 (794)
T ss_pred             eeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC-CceeeeccccCcceEEeccCCCcceEEe
Confidence            99975 467889999999999999999 67899999999999999999865 589999999999999998754 236669


Q ss_pred             EeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          659 CDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       659 gs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      |++|.+|+|||+.+..|+.++.||+.-|..+.| ||.
T Consensus       203 gaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~f-hp~  238 (794)
T KOG0276|consen  203 GADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFF-HPE  238 (794)
T ss_pred             cCCCceEEEeecchHHHHHHhhcccccceEEEe-cCC
Confidence            999999999999999999999999999999999 984

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=3.4e-20  Score=185.80  Aligned_cols=166  Identities=25%  Similarity=0.385  Sum_probs=139.5

Q ss_pred             CCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005473          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (695)
Q Consensus       504 ~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWD  583 (695)
                      ++.++|+++|+|.++.+|.-.                 .-.|.++.+|.||...|.|++|+++|++||+|+.|+.|.||.
T Consensus        71 p~g~~La~aSFD~t~~Iw~k~-----------------~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe  133 (312)
T KOG0645|consen   71 PHGRYLASASFDATVVIWKKE-----------------DGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWE  133 (312)
T ss_pred             CCCcEEEEeeccceEEEeecC-----------------CCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEE
Confidence            344899999999999999332                 235678999999999999999999999999999999999998


Q ss_pred             CCC---CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC--CCeeEEEEecCCCCeEEEEEecCCCeEEEE
Q 005473          584 TES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--PDYSLRTFTGHSTTVMSLDFHPSKEDLLCS  658 (695)
Q Consensus       584 l~t---~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t--~~~~l~~~~gh~~~V~sl~fspdg~~llaS  658 (695)
                      +..   .++...+.+|+..|..+.|+|...+|+++|.|.+|++|+-..  .-.|+.++.+|...|.+++|++.|. -+++
T Consensus       134 ~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~-rl~s  212 (312)
T KOG0645|consen  134 IDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS-RLVS  212 (312)
T ss_pred             ecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc-eEEE
Confidence            863   467888999999999999999999999999999999998762  2357899999999999999999997 4669


Q ss_pred             EeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473          659 CDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       659 gs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf  691 (695)
                      |+.|++|+||-..+.-    -.-|+..+..|+|
T Consensus       213 ~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W  241 (312)
T KOG0645|consen  213 CSDDGTVSIWRLYTDL----SGMHSRALYDVPW  241 (312)
T ss_pred             ecCCcceEeeeeccCc----chhcccceEeeee
Confidence            9999999999965210    1134455555554

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=1e-20  Score=195.72  Aligned_cols=148  Identities=21%  Similarity=0.376  Sum_probs=138.5

Q ss_pred             eeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 005473          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (695)
Q Consensus       545 ~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvW  624 (695)
                      +.+++.+.+|.-.|.++.|-|.|.+|+|++.|.+|++|++.++.++.++.+|...|..++.+-||.++++++.|.+|++|
T Consensus       183 ~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW  262 (406)
T KOG0295|consen  183 FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVW  262 (406)
T ss_pred             HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEE
Confidence            46777888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCCeeEEEEecCCCCeEEEEEecC--------------CCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEE
Q 005473          625 DTENPDYSLRTFTGHSTTVMSLDFHPS--------------KEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVR  690 (695)
Q Consensus       625 Dl~t~~~~l~~~~gh~~~V~sl~fspd--------------g~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVa  690 (695)
                      -+.++. |...+++|...|.|++|.|.              +..++++++.|++|++||+.+|.|+.++.+|..+|..++
T Consensus       263 ~~~t~~-~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~a  341 (406)
T KOG0295|consen  263 VVATKQ-CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVA  341 (406)
T ss_pred             Eeccch-hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeE
Confidence            999854 67889999999999999872              234888999999999999999999999999999999999


Q ss_pred             EeCC
Q 005473          691 VVQP  694 (695)
Q Consensus       691 f~sP  694 (695)
                      | ||
T Consensus       342 f-~p  344 (406)
T KOG0295|consen  342 F-SP  344 (406)
T ss_pred             E-cC
Confidence            9 98

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=8.5e-21  Score=206.74  Aligned_cols=169  Identities=20%  Similarity=0.300  Sum_probs=150.8

Q ss_pred             CCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEE
Q 005473          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVL  581 (695)
Q Consensus       503 ~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fsp-dg~~LaSgs~Dg~V~I  581 (695)
                      ++...++.++|.|-+|++|+...                  .+.+..++.||+..|.+|+|+| |.+.+|||+-|++|+|
T Consensus       106 HPt~P~vLtsSDDm~iKlW~we~------------------~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKV  167 (794)
T KOG0276|consen  106 HPTLPYVLTSSDDMTIKLWDWEN------------------EWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKV  167 (794)
T ss_pred             cCCCCeEEecCCccEEEEeeccC------------------ceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEE
Confidence            34458999999999999996633                  3577889999999999999999 5679999999999999


Q ss_pred             EECCCCeEEEEecccCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEE
Q 005473          582 WCTESFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC  659 (695)
Q Consensus       582 WDl~t~~~~~~l~~H~~~V~~v~~spd--g~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSg  659 (695)
                      |.+....+..++++|...|+||+|-+.  ..+|+||++|.+|+|||..+ +.|+.++.||...|.+++|||.=+ ++++|
T Consensus       168 Wslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt-k~CV~TLeGHt~Nvs~v~fhp~lp-iiisg  245 (794)
T KOG0276|consen  168 WSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT-KSCVQTLEGHTNNVSFVFFHPELP-IIISG  245 (794)
T ss_pred             EEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch-HHHHHHhhcccccceEEEecCCCc-EEEEe
Confidence            999999999999999999999999874  46999999999999999998 457999999999999999999987 77899


Q ss_pred             eCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473          660 DNNSEIRYWSINNGSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       660 s~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf  691 (695)
                      ++||+||||+-.+-+...++.-.-+.|+||+-
T Consensus       246 sEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~  277 (794)
T KOG0276|consen  246 SEDGTVRIWNSKTYKLEKTLNYGLERVWCIAA  277 (794)
T ss_pred             cCCccEEEecCcceehhhhhhcCCceEEEEee
Confidence            99999999999988888777777777888775

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=2.4e-20  Score=183.51  Aligned_cols=178  Identities=19%  Similarity=0.294  Sum_probs=157.9

Q ss_pred             CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 005473          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (695)
Q Consensus       478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~  557 (695)
                      +...+..+.|+-+|               +|+.+++.|.+|++|+...+                   ..++++.+|...
T Consensus        16 ~qgaV~avryN~dG---------------nY~ltcGsdrtvrLWNp~rg-------------------~liktYsghG~E   61 (307)
T KOG0316|consen   16 AQGAVRAVRYNVDG---------------NYCLTCGSDRTVRLWNPLRG-------------------ALIKTYSGHGHE   61 (307)
T ss_pred             cccceEEEEEccCC---------------CEEEEcCCCceEEeeccccc-------------------ceeeeecCCCce
Confidence            44577777888777               78899999999999965433                   578899999999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-eeEEEE
Q 005473          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTF  636 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~-~~l~~~  636 (695)
                      |..++.+.|...|++|+.|+.|.+||+.+++.++.+.+|.+.|+.|+|+.+...+++|+.|.+|++||.++.. .++..+
T Consensus        62 VlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQil  141 (307)
T KOG0316|consen   62 VLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQIL  141 (307)
T ss_pred             eeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998754 468888


Q ss_pred             ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       637 ~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ......|.+++...   +.|++|+.||++|.||++.|.....+.+|  +|+++.| +||
T Consensus       142 dea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~-s~d  194 (307)
T KOG0316|consen  142 DEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSF-SKD  194 (307)
T ss_pred             hhhcCceeEEEecc---cEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEe-cCC
Confidence            88889999999874   36779999999999999999888777554  7899999 875

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.85  E-value=7e-22  Score=202.75  Aligned_cols=213  Identities=18%  Similarity=0.308  Sum_probs=172.4

Q ss_pred             ccccccCCCCCceEEEEecCCCccccc------cCCccCCCCcEEEEeeCCCcEEEEeCCCCC-----------------
Q 005473          471 RPTLQHNGASSKSLLMFGSDGMGSLTS------APNQLTDMDRFVDDGSLDDNVESFLSPDDA-----------------  527 (695)
Q Consensus       471 ~~~l~~s~s~~~s~l~~~~dg~~~la~------s~~~l~~~~~~lasgS~D~~V~lw~~~~~~-----------------  527 (695)
                      +.....+|.++.++..|....-.++..      +.-.+.-.++.+++||.|.+|++|++..+.                 
T Consensus       206 DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf  285 (499)
T KOG0281|consen  206 DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRF  285 (499)
T ss_pred             cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEE
Confidence            335566778888888887654322111      111233445789999999999999988764                 


Q ss_pred             -------CCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCe
Q 005473          528 -------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI  600 (695)
Q Consensus       528 -------~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V  600 (695)
                             ..+|+...+|+..........+.+.||...|+.|.|+  .++|++++.|.+|++|++.++++++++.+|...|
T Consensus       286 ~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGI  363 (499)
T KOG0281|consen  286 SNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGI  363 (499)
T ss_pred             eCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccc
Confidence                   3455666777766655556667788999999999996  5699999999999999999999999999999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe------
Q 005473          601 TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS------  674 (695)
Q Consensus       601 ~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~------  674 (695)
                      -|+.+.  ++++++|+.|.+||+||+..+. |++.+.||+.-|.|+.|...   -+++|+.||+|+|||+..+.      
T Consensus       364 AClQYr--~rlvVSGSSDntIRlwdi~~G~-cLRvLeGHEeLvRciRFd~k---rIVSGaYDGkikvWdl~aaldpra~~  437 (499)
T KOG0281|consen  364 ACLQYR--DRLVVSGSSDNTIRLWDIECGA-CLRVLEGHEELVRCIRFDNK---RIVSGAYDGKIKVWDLQAALDPRAPA  437 (499)
T ss_pred             eehhcc--CeEEEecCCCceEEEEeccccH-HHHHHhchHHhhhheeecCc---eeeeccccceEEEEecccccCCcccc
Confidence            999885  7899999999999999999866 69999999999999999843   46699999999999997643      


Q ss_pred             ---EEEEEecCCCcEEEEEE
Q 005473          675 ---CAGVFKNFFESFVSVRV  691 (695)
Q Consensus       675 ---~v~~~~~h~~~VtsVaf  691 (695)
                         |+.++..|++.|..+.|
T Consensus       438 ~~~Cl~~lv~hsgRVFrLQF  457 (499)
T KOG0281|consen  438 STLCLRTLVEHSGRVFRLQF  457 (499)
T ss_pred             cchHHHhhhhccceeEEEee
Confidence               67777789999988888

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.84  E-value=4.8e-21  Score=204.21  Aligned_cols=169  Identities=22%  Similarity=0.382  Sum_probs=134.5

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005473          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (695)
Q Consensus       505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl  584 (695)
                      ..+++.+++.|+.|++|++-++                  ..+++++.+|..+|.+++|+.+|..|+|++.|+.|++||+
T Consensus       226 ~~hLlLS~gmD~~vklW~vy~~------------------~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDt  287 (503)
T KOG0282|consen  226 KGHLLLSGGMDGLVKLWNVYDD------------------RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDT  287 (503)
T ss_pred             eeeEEEecCCCceEEEEEEecC------------------cceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecc
Confidence            3489999999999999966432                  2578899999999999999999999999999999999999


Q ss_pred             CCCeEEEEecccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCee-------------------------------
Q 005473          585 ESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYS-------------------------------  632 (695)
Q Consensus       585 ~t~~~~~~l~~H~~~V~~v~~spdg-~~LaTgs~DgtIrvWDl~t~~~~-------------------------------  632 (695)
                      ++|+++..+.. ...++|+.|+|++ +.+++|+.|+.|+.||+++++..                               
T Consensus       288 ETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~  366 (503)
T KOG0282|consen  288 ETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSV  366 (503)
T ss_pred             ccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccE
Confidence            99999877753 3345566666654 45555555666666665532100                               


Q ss_pred             --------------------------------------------------------EEEEecCC--CCeEEEEEecCCCe
Q 005473          633 --------------------------------------------------------LRTFTGHS--TTVMSLDFHPSKED  654 (695)
Q Consensus       633 --------------------------------------------------------l~~~~gh~--~~V~sl~fspdg~~  654 (695)
                                                                              .+.|.||.  +.-+.|.|+|||. 
T Consensus       367 riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~-  445 (503)
T KOG0282|consen  367 RIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR-  445 (503)
T ss_pred             EEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC-
Confidence                                                                    11244665  4456789999998 


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          655 LLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       655 llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      +||+|+.||.+.+||.++-+.+..+++|..+|+.+.| ||
T Consensus       446 ~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~w-HP  484 (503)
T KOG0282|consen  446 TLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDW-HP  484 (503)
T ss_pred             eEEeecCCccEEEeechhhhhhhccccCCcceEEEEe-cC
Confidence            7779999999999999999999999999999999999 98

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=8.1e-21  Score=188.65  Aligned_cols=168  Identities=24%  Similarity=0.309  Sum_probs=147.0

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE  585 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~  585 (695)
                      +.+.++|+|++||+|+....                   ..+.++.+|..-|+...|+| ..+++++++.|++++|||++
T Consensus       118 ~~~ltsSWD~TiKLW~~~r~-------------------~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr  178 (311)
T KOG0277|consen  118 RIFLTSSWDGTIKLWDPNRP-------------------NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVR  178 (311)
T ss_pred             eeEEeeccCCceEeecCCCC-------------------cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEec
Confidence            34455699999999955332                   34677899999999999999 57899999999999999998


Q ss_pred             CCeEEEEecccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc
Q 005473          586 SFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (695)
Q Consensus       586 t~~~~~~l~~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~  664 (695)
                      .......++.|...|.|+.|+. +...|+||+.|+.||+||++.-+.++..+.+|.-.|..|.|+|....+|++++.|-+
T Consensus       179 ~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT  258 (311)
T KOG0277|consen  179 SPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMT  258 (311)
T ss_pred             CCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccce
Confidence            6544445899999999999987 677899999999999999999888999999999999999999999999999999999


Q ss_pred             EEEEECCC-CeEEEEEecCCCcEEEEEEeCC
Q 005473          665 IRYWSINN-GSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       665 IriWDl~t-g~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      +||||... ..++.+...|++-|..+.| ++
T Consensus       259 ~riw~~~~~ds~~e~~~~HtEFv~g~Dw-s~  288 (311)
T KOG0277|consen  259 VRIWDPERQDSAIETVDHHTEFVCGLDW-SL  288 (311)
T ss_pred             EEecccccchhhhhhhhccceEEecccc-cc
Confidence            99999974 5688888899988888888 64

>PTZ00421 coronin; Provisional

Probab=99.84  E-value=1.3e-19  Score=204.68  Aligned_cols=143  Identities=22%  Similarity=0.342  Sum_probs=126.3

Q ss_pred             EEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------eEEEEecccCCCeEEEEEcCCC-CEEEEEeCCC
Q 005473          549 QLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADR  619 (695)
Q Consensus       549 ~~l~~H~~~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~t~-------~~~~~l~~H~~~V~~v~~spdg-~~LaTgs~Dg  619 (695)
                      ..+.+|.+.|++|+|+| ++++|++|+.|++|+|||+.+.       .++..+.+|...|.+|+|+|++ .+|++|+.|+
T Consensus        69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg  148 (493)
T PTZ00421         69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM  148 (493)
T ss_pred             ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence            34679999999999999 8899999999999999999764       3567889999999999999975 6999999999


Q ss_pred             eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcE-EEEEEeCC
Q 005473          620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESF-VSVRVVQP  694 (695)
Q Consensus       620 tIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~V-tsVaf~sP  694 (695)
                      +|+|||++++. ++..+.+|...|.+++|+|+|. +|++|+.|+.|+|||+++++++..+.+|.+.+ ..+.| .|
T Consensus       149 tVrIWDl~tg~-~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w-~~  221 (493)
T PTZ00421        149 VVNVWDVERGK-AVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLW-AK  221 (493)
T ss_pred             EEEEEECCCCe-EEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEE-cC
Confidence            99999999865 4788899999999999999987 77799999999999999999999999997653 35566 54

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.84  E-value=1.4e-19  Score=201.00  Aligned_cols=166  Identities=20%  Similarity=0.365  Sum_probs=145.8

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      .++++|+.|+.|++|+...+                   -|+.++..|+..|+.+.|+..|+.|++++-||+|+.||+..
T Consensus       363 q~iaTG~eDgKVKvWn~~Sg-------------------fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR  423 (893)
T KOG0291|consen  363 QLIATGAEDGKVKVWNTQSG-------------------FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR  423 (893)
T ss_pred             cEEEeccCCCcEEEEeccCc-------------------eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence            79999999999999966433                   47889999999999999999999999999999999999999


Q ss_pred             CeEEEEeccc-CCCeEEEEEcCCCCEEEEEeCCCe-EEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc
Q 005473          587 FTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRT-VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (695)
Q Consensus       587 ~~~~~~l~~H-~~~V~~v~~spdg~~LaTgs~Dgt-IrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~  664 (695)
                      .++.+++... .-...|++..|.|.++..|+.|.. |+||++.+++. +-.+.||+++|.+++|+|++. +|++++.|.+
T Consensus       424 YrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql-lDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkT  501 (893)
T KOG0291|consen  424 YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL-LDILSGHEGPVSGLSFSPDGS-LLASGSWDKT  501 (893)
T ss_pred             cceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee-eehhcCCCCcceeeEEccccC-eEEeccccce
Confidence            9999998654 344678999999999999988864 99999999886 899999999999999999998 8889999999


Q ss_pred             EEEEECCCC-eEEEEEecCCCcEEEEEEeCCC
Q 005473          665 IRYWSINNG-SCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       665 IriWDl~tg-~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ||+||+-.. ..+.++ .+...|+.|+| +|+
T Consensus       502 VRiW~if~s~~~vEtl-~i~sdvl~vsf-rPd  531 (893)
T KOG0291|consen  502 VRIWDIFSSSGTVETL-EIRSDVLAVSF-RPD  531 (893)
T ss_pred             EEEEEeeccCceeeeE-eeccceeEEEE-cCC
Confidence            999999654 345555 46677899999 986

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.83  E-value=1.5e-19  Score=183.55  Aligned_cols=189  Identities=22%  Similarity=0.343  Sum_probs=151.9

Q ss_pred             cccccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEe
Q 005473          472 PTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI  551 (695)
Q Consensus       472 ~~l~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l  551 (695)
                      ..+.-.+.+.++.+.|+|...              .+++.||||++||+|.+.....                 ..-+..
T Consensus        20 ~ev~~pP~DsIS~l~FSP~~~--------------~~~~A~SWD~tVR~wevq~~g~-----------------~~~ka~   68 (347)
T KOG0647|consen   20 YEVPNPPEDSISALAFSPQAD--------------NLLAAGSWDGTVRIWEVQNSGQ-----------------LVPKAQ   68 (347)
T ss_pred             eecCCCcccchheeEeccccC--------------ceEEecccCCceEEEEEecCCc-----------------ccchhh
Confidence            345556677889999998443              7889999999999997754321                 011345


Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCC--EEEEEeCCCeEEEEECCCC
Q 005473          552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENP  629 (695)
Q Consensus       552 ~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~--~LaTgs~DgtIrvWDl~t~  629 (695)
                      ..|.++|.|++|+.||..+++|+.|+.+++||+.+++. ..+..|.++|.+++|-+...  .|+|||.|++||+||+|..
T Consensus        69 ~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~  147 (347)
T KOG0647|consen   69 QSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS  147 (347)
T ss_pred             hccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCC
Confidence            67999999999999999999999999999999999854 57778999999999988655  8999999999999998832


Q ss_pred             Ce-----------------------------------------------------e------------------------
Q 005473          630 DY-----------------------------------------------------S------------------------  632 (695)
Q Consensus       630 ~~-----------------------------------------------------~------------------------  632 (695)
                      ..                                                     |                        
T Consensus       148 ~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~i  227 (347)
T KOG0647|consen  148 NPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYI  227 (347)
T ss_pred             CeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEec
Confidence            10                                                     0                        


Q ss_pred             -------EEEEecCCC---------CeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          633 -------LRTFTGHST---------TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       633 -------l~~~~gh~~---------~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                             -.+|++|..         .|.+|+|+|... .|++.+.||++.+||-.....+.+.+.|..+|++.+| +-
T Consensus       228 d~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~f-n~  303 (347)
T KOG0647|consen  228 DDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSF-NR  303 (347)
T ss_pred             CCCCccCceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecchhhhhhhccCcCCCccceeEe-cC
Confidence                   022445652         367899999876 5668888999999999888899999999999999999 64

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.83  E-value=1e-18  Score=176.68  Aligned_cols=182  Identities=29%  Similarity=0.506  Sum_probs=158.2

Q ss_pred             CCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 005473          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (695)
Q Consensus       477 s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~  556 (695)
                      .+...+..+.|++++               +++++++.|+.|++|+.....                   ....+..|..
T Consensus         7 ~h~~~i~~~~~~~~~---------------~~l~~~~~~g~i~i~~~~~~~-------------------~~~~~~~~~~   52 (289)
T cd00200           7 GHTGGVTCVAFSPDG---------------KLLATGSGDGTIKVWDLETGE-------------------LLRTLKGHTG   52 (289)
T ss_pred             ccCCCEEEEEEcCCC---------------CEEEEeecCcEEEEEEeeCCC-------------------cEEEEecCCc
Confidence            345678888888865               678899999999999664331                   3455678888


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 005473          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~  636 (695)
                      .|.++.|++++++|++++.|+.|+|||+.+++.+..+..|...|.++.|++++.++++++.|+.|++||+++.+ .+..+
T Consensus        53 ~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~  131 (289)
T cd00200          53 PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-CLTTL  131 (289)
T ss_pred             ceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-EEEEe
Confidence            99999999999999999999999999999888888899999999999999998888888889999999999755 47778


Q ss_pred             ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       637 ~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ..|...|.+++|+|++. ++++++.|+.|++||+++++++..+..|...|.+++| +|+
T Consensus       132 ~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~-~~~  188 (289)
T cd00200         132 RGHTDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAF-SPD  188 (289)
T ss_pred             ccCCCcEEEEEEcCcCC-EEEEEcCCCcEEEEEccccccceeEecCccccceEEE-CCC
Confidence            88999999999999966 6767777999999999999999999999999999999 885

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.83  E-value=8.5e-21  Score=194.82  Aligned_cols=159  Identities=19%  Similarity=0.385  Sum_probs=131.8

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      ..+++|..|.+|++|+..                   ...+.+.+.||++.|.|+.|.  .++|++|+.|.+|+|||+.+
T Consensus       208 ~kiVSGlrDnTikiWD~n-------------------~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~t  266 (499)
T KOG0281|consen  208 EKIVSGLRDNTIKIWDKN-------------------SLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNT  266 (499)
T ss_pred             hhhhcccccCceEEeccc-------------------cHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccC
Confidence            457999999999999543                   234567789999999999995  56999999999999999999


Q ss_pred             CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe--eEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc
Q 005473          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (695)
Q Consensus       587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~--~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~  664 (695)
                      ++++.++.+|...|..+.|+  ..+++|++.|.+|.|||+..+..  +.+++.||...|..|+|+..   ++++++.|.+
T Consensus       267 ge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k---yIVsASgDRT  341 (499)
T KOG0281|consen  267 GEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGDRT  341 (499)
T ss_pred             CchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc---eEEEecCCce
Confidence            99999999999999999997  46999999999999999987652  34567788888888888642   6667777777


Q ss_pred             EEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473          665 IRYWSINNGSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       665 IriWDl~tg~~v~~~~~h~~~VtsVaf  691 (695)
                      |++|++.++++++++.+|..+|.|+.|
T Consensus       342 ikvW~~st~efvRtl~gHkRGIAClQY  368 (499)
T KOG0281|consen  342 IKVWSTSTCEFVRTLNGHKRGIACLQY  368 (499)
T ss_pred             EEEEeccceeeehhhhcccccceehhc
Confidence            777777777777777777777766654

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=1.4e-19  Score=204.07  Aligned_cols=196  Identities=15%  Similarity=0.233  Sum_probs=155.0

Q ss_pred             CCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCC----------------------------
Q 005473          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDAD----------------------------  528 (695)
Q Consensus       477 s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~----------------------------  528 (695)
                      .+...+.++.|++||               +|+|+|+.|+.|++|.+...+.                            
T Consensus       265 ah~gaIw~mKFS~DG---------------KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~  329 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDG---------------KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSE  329 (712)
T ss_pred             ccCCcEEEEEeCCCC---------------ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccc
Confidence            456688899999988               8999999999999997765110                            


Q ss_pred             ----CCCcc---------ccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc
Q 005473          529 ----PRDRV---------GRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE  595 (695)
Q Consensus       529 ----~~~~~---------~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~  595 (695)
                          ++...         .......-.+..+++..+.||.+.|.++.||.+ .+|++++.|++||+|++...+|+++|. 
T Consensus       330 ~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-  407 (712)
T KOG0283|consen  330 EKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-  407 (712)
T ss_pred             ccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-
Confidence                00000         011111122445677889999999999999965 478899999999999999999999886 


Q ss_pred             cCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe
Q 005473          596 HTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS  674 (695)
Q Consensus       596 H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~  674 (695)
                      |.+.|+||+|+| |.++|++||-||.||||++...+  +..+.....-|++++|.|||. .++.|+.+|.+++|+....+
T Consensus       408 HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~--Vv~W~Dl~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~~lk  484 (712)
T KOG0283|consen  408 HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK--VVDWNDLRDLITAVCYSPDGK-GAVIGTFNGYCRFYDTEGLK  484 (712)
T ss_pred             cCCeeEEEEecccCCCcEeecccccceEEeecCcCe--eEeehhhhhhheeEEeccCCc-eEEEEEeccEEEEEEccCCe
Confidence            999999999999 78999999999999999998754  344444457899999999998 55599999999999998777


Q ss_pred             EEEEEe---------cCCCcEEEEEEeCC
Q 005473          675 CAGVFK---------NFFESFVSVRVVQP  694 (695)
Q Consensus       675 ~v~~~~---------~h~~~VtsVaf~sP  694 (695)
                      .+..+.         .|. .||.+.| .|
T Consensus       485 ~~~~~~I~~~~~Kk~~~~-rITG~Q~-~p  511 (712)
T KOG0283|consen  485 LVSDFHIRLHNKKKKQGK-RITGLQF-FP  511 (712)
T ss_pred             EEEeeeEeeccCccccCc-eeeeeEe-cC
Confidence            665443         133 7999998 76

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=1.8e-19  Score=197.48  Aligned_cols=202  Identities=18%  Similarity=0.321  Sum_probs=167.9

Q ss_pred             cccCCCCCceEEEEecCCCccccccC--------------CccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCcccccccc
Q 005473          474 LQHNGASSKSLLMFGSDGMGSLTSAP--------------NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEV  539 (695)
Q Consensus       474 l~~s~s~~~s~l~~~~dg~~~la~s~--------------~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~  539 (695)
                      ..+.++++..++.|...-........              ..+...++-++++|.|.+|++|....+.            
T Consensus        39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~------------  106 (735)
T KOG0308|consen   39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN------------  106 (735)
T ss_pred             eEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc------------
Confidence            46788899999999876542211111              1145556788999999999999765441            


Q ss_pred             CCCceeeeEEEecCCCCCeEEEEE-cCCCCEEEEEeCCCcEEEEECCCCeE--E--------EEec-ccCCCeEEEEEcC
Q 005473          540 GKGFTFTEFQLIPASTSKVESCHF-SPDGKLLATGGHDKKAVLWCTESFTV--K--------STLE-EHTQWITDVRFSP  607 (695)
Q Consensus       540 ~~~~~~~~v~~l~~H~~~V~~v~f-spdg~~LaSgs~Dg~V~IWDl~t~~~--~--------~~l~-~H~~~V~~v~~sp  607 (695)
                           .-+..+++.|++.|.|+++ .++..++|+||-|+.|.|||+.++..  +        ..+. |+...|++++..+
T Consensus       107 -----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~  181 (735)
T KOG0308|consen  107 -----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ  181 (735)
T ss_pred             -----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC
Confidence                 2356788999999999999 88889999999999999999997622  2        2233 8899999999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEE
Q 005473          608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFV  687 (695)
Q Consensus       608 dg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~Vt  687 (695)
                      .|..|++|+..+.+++||.++.+. +..+.||...|.++..++||..+| +++.||+|++||++..+|+.++..|++.|+
T Consensus       182 t~t~ivsGgtek~lr~wDprt~~k-imkLrGHTdNVr~ll~~dDGt~~l-s~sSDgtIrlWdLgqQrCl~T~~vH~e~VW  259 (735)
T KOG0308|consen  182 TGTIIVSGGTEKDLRLWDPRTCKK-IMKLRGHTDNVRVLLVNDDGTRLL-SASSDGTIRLWDLGQQRCLATYIVHKEGVW  259 (735)
T ss_pred             cceEEEecCcccceEEeccccccc-eeeeeccccceEEEEEcCCCCeEe-ecCCCceEEeeeccccceeeeEEeccCceE
Confidence            999999999999999999999776 677789999999999999999666 999999999999999999999999999999


Q ss_pred             EEEEeCCC
Q 005473          688 SVRVVQPR  695 (695)
Q Consensus       688 sVaf~sPd  695 (695)
                      ++.. +|+
T Consensus       260 aL~~-~~s  266 (735)
T KOG0308|consen  260 ALQS-SPS  266 (735)
T ss_pred             EEee-CCC
Confidence            9987 664

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.82  E-value=6.1e-19  Score=189.55  Aligned_cols=164  Identities=24%  Similarity=0.418  Sum_probs=143.5

Q ss_pred             EEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 005473          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF  587 (695)
Q Consensus       508 ~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~  587 (695)
                      .+++|+.|.+|.+|                   .+.+++...+++.|...|.|+.|+|||+++++++.||+|.|||-.++
T Consensus       162 Ri~T~sdDn~v~ff-------------------eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg  222 (603)
T KOG0318|consen  162 RIATGSDDNTVAFF-------------------EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG  222 (603)
T ss_pred             EEEeccCCCeEEEe-------------------eCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCc
Confidence            47889999999998                   45566777888999999999999999999999999999999999999


Q ss_pred             eEEEEec---ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe---------------------------------
Q 005473          588 TVKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---------------------------------  631 (695)
Q Consensus       588 ~~~~~l~---~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~---------------------------------  631 (695)
                      +.+..+.   +|.+.|++++|+||+..|+|++.|+++||||+.+.+.                                 
T Consensus       223 e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~i  302 (603)
T KOG0318|consen  223 EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTI  302 (603)
T ss_pred             cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEE
Confidence            9999997   8999999999999999999999999999999976431                                 


Q ss_pred             ---------eEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEE-ecCCCcEEEEEE
Q 005473          632 ---------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KNFFESFVSVRV  691 (695)
Q Consensus       632 ---------~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~-~~h~~~VtsVaf  691 (695)
                               ++.++.||...|+++..+|+++ .|++|+.||.|.-||+.+|.+-+.. ++|+.-|.+++-
T Consensus       303 n~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~-~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~  371 (603)
T KOG0318|consen  303 NYLNPSDPSVLKVISGHNKSITALTVSPDGK-TIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAA  371 (603)
T ss_pred             EEecccCCChhheecccccceeEEEEcCCCC-EEEeeccCceEEEEecCCccccccccccccceEEEEee
Confidence                     1234569999999999999997 5669999999999999998776665 578777777764

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=1.2e-19  Score=203.76  Aligned_cols=167  Identities=22%  Similarity=0.405  Sum_probs=149.7

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      .++.++-..|.|.+|+..-+                   ..+..+..|.++|..|+|+|...+++|||+|.+|+||+.++
T Consensus        22 PwILtslHsG~IQlWDYRM~-------------------tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~   82 (1202)
T KOG0292|consen   22 PWILTSLHSGVIQLWDYRMG-------------------TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT   82 (1202)
T ss_pred             CEEEEeecCceeeeehhhhh-------------------hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence            78999999999999976433                   34566789999999999999999999999999999999999


Q ss_pred             CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEE
Q 005473          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (695)
Q Consensus       587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~Ir  666 (695)
                      .+|+.++.||-+.|..+.|++.-.+++++|+|-+||||+..+.+ |+.+++||...|+|..|||... +++|++-|-+||
T Consensus        83 rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~-~iavltGHnHYVMcAqFhptED-lIVSaSLDQTVR  160 (1202)
T KOG0292|consen   83 RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK-CIAVLTGHNHYVMCAQFHPTED-LIVSASLDQTVR  160 (1202)
T ss_pred             ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc-eEEEEecCceEEEeeccCCccc-eEEEecccceEE
Confidence            99999999999999999999999999999999999999999855 6999999999999999999866 888999999999


Q ss_pred             EEECCC--------C-------------------eEE--EEEecCCCcEEEEEEeCCC
Q 005473          667 YWSINN--------G-------------------SCA--GVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       667 iWDl~t--------g-------------------~~v--~~~~~h~~~VtsVaf~sPd  695 (695)
                      |||+..        +                   .++  ..+.||...|..++| ||.
T Consensus       161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAf-hpT  217 (1202)
T KOG0292|consen  161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAF-HPT  217 (1202)
T ss_pred             EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEe-cCC
Confidence            999841        1                   112  356699999999999 983

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.82  E-value=1.4e-18  Score=208.33  Aligned_cols=167  Identities=24%  Similarity=0.304  Sum_probs=145.0

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT  584 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl  584 (695)
                      ..++++++.|++|++|+....                   ..+..+.+|.+.|++|+|+| ++.+|++|+.|++|+|||+
T Consensus       545 ~~~las~~~Dg~v~lWd~~~~-------------------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~  605 (793)
T PLN00181        545 KSQVASSNFEGVVQVWDVARS-------------------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSI  605 (793)
T ss_pred             CCEEEEEeCCCeEEEEECCCC-------------------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEEC
Confidence            478999999999999965322                   34567789999999999997 7899999999999999999


Q ss_pred             CCCeEEEEecccCCCeEEEEEc-CCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC
Q 005473          585 ESFTVKSTLEEHTQWITDVRFS-PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (695)
Q Consensus       585 ~t~~~~~~l~~H~~~V~~v~~s-pdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg  663 (695)
                      +++.++..+..| ..|.++.|+ +++.+|++|+.|++|++||+++.+.++..+.+|...|.++.|. ++. +|++++.|+
T Consensus       606 ~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~-~lvs~s~D~  682 (793)
T PLN00181        606 NQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS-TLVSSSTDN  682 (793)
T ss_pred             CCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC-EEEEEECCC
Confidence            999998888754 679999995 4689999999999999999998765677888999999999997 555 677999999


Q ss_pred             cEEEEECCC------CeEEEEEecCCCcEEEEEEeCCC
Q 005473          664 EIRYWSINN------GSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       664 ~IriWDl~t------g~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +|+|||++.      ..++..+.+|...|.+++| +|+
T Consensus       683 ~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~-s~~  719 (793)
T PLN00181        683 TLKLWDLSMSISGINETPLHSFMGHTNVKNFVGL-SVS  719 (793)
T ss_pred             EEEEEeCCCCccccCCcceEEEcCCCCCeeEEEE-cCC
Confidence            999999974      3678899999999999999 874

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.82  E-value=2.5e-18  Score=173.76  Aligned_cols=168  Identities=29%  Similarity=0.488  Sum_probs=147.8

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~  585 (695)
                      ..++++++.|+.|.+|+....                   ..+..+..|...|.+++|++++.+|++++.|+.|++||++
T Consensus       105 ~~~~~~~~~~~~i~~~~~~~~-------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~  165 (289)
T cd00200         105 GRILSSSSRDKTIKVWDVETG-------------------KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR  165 (289)
T ss_pred             CCEEEEecCCCeEEEEECCCc-------------------EEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcc
Confidence            378888888999999965321                   3445566888999999999999999998889999999999


Q ss_pred             CCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcE
Q 005473          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (695)
Q Consensus       586 t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~I  665 (695)
                      +++.+..+..|...|.+++|+|++..+++++.|+.|++||++.+.. +..+..|...|.+++|+|++. ++++++.||.|
T Consensus       166 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i  243 (289)
T cd00200         166 TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC-LGTLRGHENGVNSVAFSPDGY-LLASGSEDGTI  243 (289)
T ss_pred             ccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCce-ecchhhcCCceEEEEEcCCCc-EEEEEcCCCcE
Confidence            9999989999999999999999999999999999999999997554 777778999999999999954 77788889999


Q ss_pred             EEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          666 RYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       666 riWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ++||+.+++++..+.+|...|.+++| +|+
T Consensus       244 ~i~~~~~~~~~~~~~~~~~~i~~~~~-~~~  272 (289)
T cd00200         244 RVWDLRTGECVQTLSGHTNSVTSLAW-SPD  272 (289)
T ss_pred             EEEEcCCceeEEEccccCCcEEEEEE-CCC
Confidence            99999999999999999999999999 874

>PTZ00420 coronin; Provisional

Probab=99.82  E-value=1.9e-18  Score=196.78  Aligned_cols=140  Identities=19%  Similarity=0.246  Sum_probs=120.7

Q ss_pred             eeEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCe--------EEEEecccCCCeEEEEEcCCCCE-EEEE
Q 005473          546 TEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFT--------VKSTLEEHTQWITDVRFSPSLSR-LATS  615 (695)
Q Consensus       546 ~~v~~l~~H~~~V~~v~fspd-g~~LaSgs~Dg~V~IWDl~t~~--------~~~~l~~H~~~V~~v~~spdg~~-LaTg  615 (695)
                      ..+..+.+|.+.|.+|+|+|+ +.+|++|+.|++|+|||+.++.        ++..+.+|...|.+|+|+|++.. |+++
T Consensus        65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg  144 (568)
T PTZ00420         65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS  144 (568)
T ss_pred             ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence            356788999999999999997 7899999999999999997542        34567899999999999998775 5789


Q ss_pred             eCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEE
Q 005473          616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVS  688 (695)
Q Consensus       616 s~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~Vts  688 (695)
                      +.|++|+|||++++.. +..+. |...|.+++|+|+|. +|++++.|+.|+|||+++++++.++.+|.+.+.+
T Consensus       145 S~DgtIrIWDl~tg~~-~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s  214 (568)
T PTZ00420        145 GFDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNT  214 (568)
T ss_pred             eCCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEEEEecccCCcee
Confidence            9999999999998764 45554 567899999999998 6678888999999999999999999999876544

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.81  E-value=9.3e-19  Score=194.44  Aligned_cols=167  Identities=28%  Similarity=0.445  Sum_probs=144.1

Q ss_pred             cEEEEeeCC-CcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005473          507 RFVDDGSLD-DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (695)
Q Consensus       507 ~~lasgS~D-~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~  585 (695)
                      ++++.|+.. +-+.+|.....                   ..+....+|...|+|++++|||.+||+|+.||+|+|||+.
T Consensus       320 DWiA~g~~klgQLlVweWqsE-------------------sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~  380 (893)
T KOG0291|consen  320 DWIAFGCSKLGQLLVWEWQSE-------------------SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ  380 (893)
T ss_pred             CEEEEcCCccceEEEEEeecc-------------------ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEecc
Confidence            677777643 67777744322                   3455667999999999999999999999999999999999


Q ss_pred             CCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC-CCeEEEEEecCCCeEEEEEeCCC-
Q 005473          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNS-  663 (695)
Q Consensus       586 t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~-~~V~sl~fspdg~~llaSgs~Dg-  663 (695)
                      .+-|..++..|+..|+.+.|+..++.|+++|-||+||.||+...+ +.++|.... -...||+..|.|. ++++|+.|. 
T Consensus       381 SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr-NfRTft~P~p~QfscvavD~sGe-lV~AG~~d~F  458 (893)
T KOG0291|consen  381 SGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR-NFRTFTSPEPIQFSCVAVDPSGE-LVCAGAQDSF  458 (893)
T ss_pred             CceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc-eeeeecCCCceeeeEEEEcCCCC-EEEeeccceE
Confidence            999999999999999999999999999999999999999999755 478887654 2357888899887 777887665 


Q ss_pred             cEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          664 EIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       664 ~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      .|.||++.+|+.+..+.||.+||.+++| +|.
T Consensus       459 ~IfvWS~qTGqllDiLsGHEgPVs~l~f-~~~  489 (893)
T KOG0291|consen  459 EIFVWSVQTGQLLDILSGHEGPVSGLSF-SPD  489 (893)
T ss_pred             EEEEEEeecCeeeehhcCCCCcceeeEE-ccc
Confidence            6999999999999999999999999999 884

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=8.1e-19  Score=197.19  Aligned_cols=202  Identities=19%  Similarity=0.360  Sum_probs=168.6

Q ss_pred             ccccCCCCCceEEEEecCCCccccccCC--------ccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCce
Q 005473          473 TLQHNGASSKSLLMFGSDGMGSLTSAPN--------QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT  544 (695)
Q Consensus       473 ~l~~s~s~~~s~l~~~~dg~~~la~s~~--------~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~  544 (695)
                      .++.+|.++..+..|+-+...++..-..        .|+..-.|+.++|.|-+|++|+....                  
T Consensus        64 plFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr------------------  125 (1202)
T KOG0292|consen   64 PLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR------------------  125 (1202)
T ss_pred             CeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC------------------
Confidence            4566777888888888776544333221        24555578999999999999966433                  


Q ss_pred             eeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--------C---------------------eEEEEecc
Q 005473          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--------F---------------------TVKSTLEE  595 (695)
Q Consensus       545 ~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t--------~---------------------~~~~~l~~  595 (695)
                       +++.+++||.-.|.|..|+|...+|+||+-|-+|||||+..        +                     -....++|
T Consensus       126 -~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG  204 (1202)
T KOG0292|consen  126 -KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG  204 (1202)
T ss_pred             -ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc
Confidence             67899999999999999999999999999999999999842        1                     12356789


Q ss_pred             cCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe
Q 005473          596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS  674 (695)
Q Consensus       596 H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~-~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~  674 (695)
                      |...|+.++|+|.-.+|++|++|+.|++|.+...+ .-+-++.||...|.|+-|||... ++.|.++|++|||||+...+
T Consensus       205 HDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~kRt  283 (1202)
T KOG0292|consen  205 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMTKRT  283 (1202)
T ss_pred             cccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccc-eeEecCCCccEEEEeccccc
Confidence            99999999999999999999999999999997644 33678899999999999999866 67799999999999999999


Q ss_pred             EEEEEecCCCcEEEEEEeCCC
Q 005473          675 CAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       675 ~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ++.+|+-..+..+.|+- ||.
T Consensus       284 ~v~tfrrendRFW~laa-hP~  303 (1202)
T KOG0292|consen  284 SVQTFRRENDRFWILAA-HPE  303 (1202)
T ss_pred             ceeeeeccCCeEEEEEe-cCC
Confidence            99999977788899998 884

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.81  E-value=2.3e-19  Score=199.21  Aligned_cols=169  Identities=22%  Similarity=0.343  Sum_probs=145.4

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEC
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCT  584 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg-~~LaSgs~Dg~V~IWDl  584 (695)
                      ..++++||.|.++++|..+++.               ....++....+|+..|.+|+++..+ .+|++++.|+++++|++
T Consensus       377 g~llat~sKD~svilWr~~~~~---------------~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l  441 (775)
T KOG0319|consen  377 GDLLATGSKDKSVILWRLNNNC---------------SKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDL  441 (775)
T ss_pred             CcEEEEecCCceEEEEEecCCc---------------chhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecC
Confidence            3599999999999999663331               2234556667999999999997755 48999999999999999


Q ss_pred             CCCeE-----E----EEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeE
Q 005473          585 ESFTV-----K----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL  655 (695)
Q Consensus       585 ~t~~~-----~----~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~l  655 (695)
                      ...+.     +    .+...|...|+||+++|+..+++|||.|++.+||++.... .+.++.||...|+||.|+|... +
T Consensus       442 ~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~-l~~vLsGH~RGvw~V~Fs~~dq-~  519 (775)
T KOG0319|consen  442 PKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR-LLGVLSGHTRGVWCVSFSKNDQ-L  519 (775)
T ss_pred             CCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce-EEEEeeCCccceEEEEeccccc-e
Confidence            76221     1    1335799999999999999999999999999999999655 4899999999999999999876 8


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473          656 LCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       656 laSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf  691 (695)
                      +++|+.|++|+||.+.+.+|+.+|.||+..|..+.|
T Consensus       520 laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F  555 (775)
T KOG0319|consen  520 LATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASF  555 (775)
T ss_pred             eEeccCCceEEEEEeccceeeeeecCccceeEeeee
Confidence            889999999999999999999999999999999988

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.81  E-value=6.5e-19  Score=184.59  Aligned_cols=190  Identities=18%  Similarity=0.345  Sum_probs=152.7

Q ss_pred             cccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecC
Q 005473          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA  553 (695)
Q Consensus       474 l~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~  553 (695)
                      +...+.+.+--+.|+++|               +++|+++.|.+.-+|.+..+.                .++..+++.+
T Consensus       219 il~~htdEVWfl~FS~nG---------------kyLAsaSkD~Taiiw~v~~d~----------------~~kl~~tlvg  267 (519)
T KOG0293|consen  219 ILQDHTDEVWFLQFSHNG---------------KYLASASKDSTAIIWIVVYDV----------------HFKLKKTLVG  267 (519)
T ss_pred             hHhhCCCcEEEEEEcCCC---------------eeEeeccCCceEEEEEEecCc----------------ceeeeeeeec
Confidence            455677788889999888               799999999999999664431                2567889999


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec-ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC---
Q 005473          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP---  629 (695)
Q Consensus       554 H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~-~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~---  629 (695)
                      |..+|.-+.||||.++|++|+.|..+++||+.++.+.+.+. +|...+.+++|.|||..+++|+.|++|..||++..   
T Consensus       268 h~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~  347 (519)
T KOG0293|consen  268 HSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILG  347 (519)
T ss_pred             ccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhh
Confidence            99999999999999999999999999999999999887773 45688999999999999999999999999998631   


Q ss_pred             -------------------CeeEEE------------------EecCCCCeEEEEEec----------------------
Q 005473          630 -------------------DYSLRT------------------FTGHSTTVMSLDFHP----------------------  650 (695)
Q Consensus       630 -------------------~~~l~~------------------~~gh~~~V~sl~fsp----------------------  650 (695)
                                         +..+..                  +......|+++.++.                      
T Consensus       348 ~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~  427 (519)
T KOG0293|consen  348 NWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN  427 (519)
T ss_pred             cccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchh
Confidence                               100000                  000112233333333                      


Q ss_pred             ----------------------CCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          651 ----------------------SKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       651 ----------------------dg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                                            ....++++|++|+.|+||+..+|+++.++.||+..|.+|+| +|.
T Consensus       428 ~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVsw-NP~  493 (519)
T KOG0293|consen  428 KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSW-NPA  493 (519)
T ss_pred             hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEec-CCC
Confidence                                  22347799999999999999999999999999999999999 983

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=3.3e-20  Score=205.22  Aligned_cols=169  Identities=22%  Similarity=0.423  Sum_probs=156.2

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005473          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (695)
Q Consensus       505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl  584 (695)
                      .+.+|+.|+.|++|++|+....                   ..+++|.+|...+..|.|+|-+.|+++|+.|+.++|||+
T Consensus        81 ~E~LlaagsasgtiK~wDleeA-------------------k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~  141 (825)
T KOG0267|consen   81 SERLLAAGSASGTIKVWDLEEA-------------------KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDI  141 (825)
T ss_pred             chhhhcccccCCceeeeehhhh-------------------hhhhhhhccccCcceeeeccceEEeccccccccceehhh
Confidence            3478999999999999976432                   355688999999999999999999999999999999999


Q ss_pred             CCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc
Q 005473          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (695)
Q Consensus       585 ~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~  664 (695)
                      +...|.+.+.+|...|.+++|+|+|+++++|+.|.+|+|||+..++. +..|.+|.+.|.+++|||.. .++++|+.|++
T Consensus       142 Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~-~~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~t  219 (825)
T KOG0267|consen  142 RKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKL-SKEFKSHEGKVQSLEFHPLE-VLLAPGSSDRT  219 (825)
T ss_pred             hccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccc-ccccccccccccccccCchh-hhhccCCCCce
Confidence            98899999999999999999999999999999999999999998775 89999999999999999984 59999999999


Q ss_pred             EEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          665 IRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       665 IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      |++||+++.+.+...+....+|.+++| +|+
T Consensus       220 v~f~dletfe~I~s~~~~~~~v~~~~f-n~~  249 (825)
T KOG0267|consen  220 VRFWDLETFEVISSGKPETDGVRSLAF-NPD  249 (825)
T ss_pred             eeeeccceeEEeeccCCccCCceeeee-cCC
Confidence            999999999999999988999999999 885

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.81  E-value=1.3e-18  Score=187.10  Aligned_cols=185  Identities=21%  Similarity=0.447  Sum_probs=156.0

Q ss_pred             CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCC------------------------------C
Q 005473          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDD------------------------------A  527 (695)
Q Consensus       478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~------------------------------~  527 (695)
                      ++...++..|+|.|               .|+++|...|+|++|+....                              +
T Consensus        58 H~~~vtVAkySPsG---------------~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avG  122 (603)
T KOG0318|consen   58 HAHQVTVAKYSPSG---------------FYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVG  122 (603)
T ss_pred             ccceeEEEEeCCCc---------------eEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEe
Confidence            45566666666655               79999999999999977552                              2


Q ss_pred             CCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEc
Q 005473          528 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS  606 (695)
Q Consensus       528 ~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~-~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~s  606 (695)
                      ++++++++......+   ..+..+.+|...|++|+|-|..- .+++|++|++|.+|.-...+...++..|...|.|++|+
T Consensus       123 EGrerfg~~F~~DSG---~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRys  199 (603)
T KOG0318|consen  123 EGRERFGHVFLWDSG---NSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYS  199 (603)
T ss_pred             cCccceeEEEEecCC---CccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEEC
Confidence            345555555444444   33566789999999999998766 69999999999999999899999999999999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCCeeEEEEe---cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecC
Q 005473          607 PSLSRLATSSADRTVRVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF  682 (695)
Q Consensus       607 pdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~---gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h  682 (695)
                      |||.+++|++.||+|.+||=.+++. +..+.   +|.+.|.+|.|+||+..++ +++.|.+++|||+.++++++++.-.
T Consensus       200 PDG~~Fat~gsDgki~iyDGktge~-vg~l~~~~aHkGsIfalsWsPDs~~~~-T~SaDkt~KIWdVs~~slv~t~~~~  276 (603)
T KOG0318|consen  200 PDGSRFATAGSDGKIYIYDGKTGEK-VGELEDSDAHKGSIFALSWSPDSTQFL-TVSADKTIKIWDVSTNSLVSTWPMG  276 (603)
T ss_pred             CCCCeEEEecCCccEEEEcCCCccE-EEEecCCCCccccEEEEEECCCCceEE-EecCCceEEEEEeeccceEEEeecC
Confidence            9999999999999999999999875 77777   8999999999999998555 9999999999999999999988743

>PTZ00420 coronin; Provisional

Probab=99.80  E-value=1e-17  Score=190.87  Aligned_cols=176  Identities=14%  Similarity=0.199  Sum_probs=135.7

Q ss_pred             CCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 005473          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (695)
Q Consensus       477 s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~  556 (695)
                      .+...+..+.|+|+..              .++++|+.|++|++|+...+....           .....++..+.+|..
T Consensus        72 gH~~~V~~lafsP~~~--------------~lLASgS~DgtIrIWDi~t~~~~~-----------~~i~~p~~~L~gH~~  126 (568)
T PTZ00420         72 GHTSSILDLQFNPCFS--------------EILASGSEDLTIRVWEIPHNDESV-----------KEIKDPQCILKGHKK  126 (568)
T ss_pred             CCCCCEEEEEEcCCCC--------------CEEEEEeCCCeEEEEECCCCCccc-----------cccccceEEeecCCC
Confidence            3456677777777532              789999999999999876432100           000124456789999


Q ss_pred             CeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE
Q 005473          557 KVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (695)
Q Consensus       557 ~V~~v~fspdg~~-LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~  635 (695)
                      .|.+|+|+|++.. |++|+.|++|+|||+++++.+..+. |...|.+++|+|+|.+|++++.|+.|+|||++++.. +..
T Consensus       127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~-i~t  204 (568)
T PTZ00420        127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI-ASS  204 (568)
T ss_pred             cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE-EEE
Confidence            9999999999875 5789999999999999998877775 668899999999999999999999999999998764 788


Q ss_pred             EecCCCCeEEE-----EEecCCCeEEEEEeCC----CcEEEEECCC-CeEEEEEe
Q 005473          636 FTGHSTTVMSL-----DFHPSKEDLLCSCDNN----SEIRYWSINN-GSCAGVFK  680 (695)
Q Consensus       636 ~~gh~~~V~sl-----~fspdg~~llaSgs~D----g~IriWDl~t-g~~v~~~~  680 (695)
                      +.+|.+.+.+.     .|++++..++ +++.|    +.|+|||+++ ++++..+.
T Consensus       205 l~gH~g~~~s~~v~~~~fs~d~~~Il-TtG~d~~~~R~VkLWDlr~~~~pl~~~~  258 (568)
T PTZ00420        205 FHIHDGGKNTKNIWIDGLGGDDNYIL-STGFSKNNMREMKLWDLKNTTSALVTMS  258 (568)
T ss_pred             EecccCCceeEEEEeeeEcCCCCEEE-EEEcCCCCccEEEEEECCCCCCceEEEE
Confidence            99998765433     3457877555 55444    4799999995 66676654

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.80  E-value=1.1e-18  Score=198.16  Aligned_cols=178  Identities=21%  Similarity=0.373  Sum_probs=155.2

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCCC------------------------CCCccccccccCCCceeeeEEEecCCCCCeEE
Q 005473          505 MDRFVDDGSLDDNVESFLSPDDAD------------------------PRDRVGRSAEVGKGFTFTEFQLIPASTSKVES  560 (695)
Q Consensus       505 ~~~~lasgS~D~~V~lw~~~~~~~------------------------~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~  560 (695)
                      .+.++++|+.|.++++|+..++..                        .+|...++|+...+   ..+.++.+|.++|.|
T Consensus       260 ~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~---~~l~l~~~h~~~V~~  336 (537)
T KOG0274|consen  260 GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNG---ACLNLLRGHTGPVNC  336 (537)
T ss_pred             CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCc---ceEEEeccccccEEE
Confidence            368889999999999998766631                        25666677777755   567778889999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC
Q 005473          561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS  640 (695)
Q Consensus       561 v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~  640 (695)
                      +.++  +.++++|+.|++|+|||+.++++++++.+|++.|+++.+... .++++|+.|++|++||+++...|+.++.+|.
T Consensus       337 v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~  413 (537)
T KOG0274|consen  337 VQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHT  413 (537)
T ss_pred             EEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCc
Confidence            9998  889999999999999999999999999999999999988765 8999999999999999998745799999999


Q ss_pred             CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec-CCCcEEEEEE
Q 005473          641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKN-FFESFVSVRV  691 (695)
Q Consensus       641 ~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~-h~~~VtsVaf  691 (695)
                      +-|.++.+..  . ++++++.|++|++||..+++|++++.+ |...|+++++
T Consensus       414 ~~v~~l~~~~--~-~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~  462 (537)
T KOG0274|consen  414 SLVSSLLLRD--N-FLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALAL  462 (537)
T ss_pred             cccccccccc--c-eeEeccccccEEEeecccCceeeeeccCCcccEEEeec
Confidence            9997777653  3 677999999999999999999999998 7788888876

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.80  E-value=5.8e-18  Score=203.16  Aligned_cols=184  Identities=15%  Similarity=0.278  Sum_probs=145.6

Q ss_pred             CCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCe
Q 005473          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV  558 (695)
Q Consensus       479 s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V  558 (695)
                      ...+..+.|++++               +++++|+.|++|++|+.......          .... ..++..+. +...|
T Consensus       483 ~~~V~~i~fs~dg---------------~~latgg~D~~I~iwd~~~~~~~----------~~~~-~~~~~~~~-~~~~v  535 (793)
T PLN00181        483 SNLVCAIGFDRDG---------------EFFATAGVNKKIKIFECESIIKD----------GRDI-HYPVVELA-SRSKL  535 (793)
T ss_pred             CCcEEEEEECCCC---------------CEEEEEeCCCEEEEEECCccccc----------cccc-ccceEEec-ccCce
Confidence            3445556666554               78999999999999976431100          0000 01122233 34579


Q ss_pred             EEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 005473          559 ESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTF  636 (695)
Q Consensus       559 ~~v~fsp-dg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWDl~t~~~~l~~~  636 (695)
                      .+++|++ ++.+|++++.||+|+|||+.+++.+..+.+|.+.|++++|+| ++.+|+||+.|++|++||++++. ++..+
T Consensus       536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-~~~~~  614 (793)
T PLN00181        536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV-SIGTI  614 (793)
T ss_pred             eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc-EEEEE
Confidence            9999987 478999999999999999999999999999999999999997 78899999999999999999865 46777


Q ss_pred             ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe-EEEEEecCCCcEEEEEE
Q 005473          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKNFFESFVSVRV  691 (695)
Q Consensus       637 ~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~-~v~~~~~h~~~VtsVaf  691 (695)
                      ..+ ..|+++.|++....+|++|+.||.|++||+++++ ++..+.+|...|++|+|
T Consensus       615 ~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f  669 (793)
T PLN00181        615 KTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRF  669 (793)
T ss_pred             ecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEE
Confidence            654 6799999976544578899999999999998865 67788899999999999

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.79  E-value=5.4e-18  Score=175.82  Aligned_cols=154  Identities=20%  Similarity=0.319  Sum_probs=140.3

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~  585 (695)
                      .+++++|+.|....+|....+.                   ....+.+|++.|+|+.|+.||.+||||+.+|.|+||.+.
T Consensus        76 ~~l~aTGGgDD~AflW~~~~ge-------------------~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s  136 (399)
T KOG0296|consen   76 NNLVATGGGDDLAFLWDISTGE-------------------FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS  136 (399)
T ss_pred             CceEEecCCCceEEEEEccCCc-------------------ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence            3899999999999999765542                   456788999999999999999999999999999999999


Q ss_pred             CCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcE
Q 005473          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (695)
Q Consensus       586 t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~I  665 (695)
                      ++.....+......|.-++|+|.+..|+.|+.||.|.+|.+.+... .+.+.||...+++-.|.|+|+. ++++..||+|
T Consensus       137 tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~-~kv~~Gh~~~ct~G~f~pdGKr-~~tgy~dgti  214 (399)
T KOG0296|consen  137 TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL-CKVMSGHNSPCTCGEFIPDGKR-ILTGYDDGTI  214 (399)
T ss_pred             cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcce-eeEecCCCCCcccccccCCCce-EEEEecCceE
Confidence            9999988876678899999999999999999999999999998654 7999999999999999999995 5599999999


Q ss_pred             EEEECCCCeEEEEEe
Q 005473          666 RYWSINNGSCAGVFK  680 (695)
Q Consensus       666 riWDl~tg~~v~~~~  680 (695)
                      ++||++++.++.++.
T Consensus       215 ~~Wn~ktg~p~~~~~  229 (399)
T KOG0296|consen  215 IVWNPKTGQPLHKIT  229 (399)
T ss_pred             EEEecCCCceeEEec
Confidence            999999999998887

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.79  E-value=1.6e-18  Score=184.27  Aligned_cols=179  Identities=17%  Similarity=0.296  Sum_probs=151.0

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTE  585 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~-~LaSgs~Dg~V~IWDl~  585 (695)
                      .+|++++..+.|.+|+...........+         .+.+-..|.+|...-+.++|++... .|++|+.|++|++||+.
T Consensus       138 ~iVAt~t~~~dv~Vfd~tk~~s~~~~~~---------~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~  208 (422)
T KOG0264|consen  138 NIVATKTSSGDVYVFDYTKHPSKPKASG---------ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDIN  208 (422)
T ss_pred             cEEEecCCCCCEEEEEeccCCCcccccc---------cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEecc
Confidence            7899999999999998765533211111         3456678899999889999998654 78999999999999996


Q ss_pred             CC-------eEEEEecccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CCeeEEEEecCCCCeEEEEEecCCCeEE
Q 005473          586 SF-------TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN-PDYSLRTFTGHSTTVMSLDFHPSKEDLL  656 (695)
Q Consensus       586 t~-------~~~~~l~~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWDl~t-~~~~l~~~~gh~~~V~sl~fspdg~~ll  656 (695)
                      ..       .+...+.+|.+.|.+++|++ +..+|++++.|+.+.|||+|+ ...+.....+|.+.|.|++|+|-+..+|
T Consensus       209 ~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~il  288 (422)
T KOG0264|consen  209 AESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFIL  288 (422)
T ss_pred             ccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceE
Confidence            43       24567799999999999999 466789999999999999996 3345678889999999999999999999


Q ss_pred             EEEeCCCcEEEEECCC-CeEEEEEecCCCcEEEEEEeCCC
Q 005473          657 CSCDNNSEIRYWSINN-GSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       657 aSgs~Dg~IriWDl~t-g~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      |+|+.|++|.+||+|+ .+++.++.+|.+.|..|.| +|.
T Consensus       289 AT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~W-SPh  327 (422)
T KOG0264|consen  289 ATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEW-SPH  327 (422)
T ss_pred             EeccCCCcEEEeechhcccCceeccCCCcceEEEEe-CCC
Confidence            9999999999999997 5689999999999999999 995

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.4e-17  Score=162.88  Aligned_cols=194  Identities=24%  Similarity=0.292  Sum_probs=144.5

Q ss_pred             CCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCe
Q 005473          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV  558 (695)
Q Consensus       479 s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V  558 (695)
                      +..+..+.|+|.|               .+.+.|+...+.++...+.-.+.+.  .+  ...+-......+.-+.|++.|
T Consensus        32 sqairav~fhp~g---------------~lyavgsnskt~ric~yp~l~~~r~--~h--ea~~~pp~v~~kr~khhkgsi   92 (350)
T KOG0641|consen   32 SQAIRAVAFHPAG---------------GLYAVGSNSKTFRICAYPALIDLRH--AH--EAAKQPPSVLCKRNKHHKGSI   92 (350)
T ss_pred             hhheeeEEecCCC---------------ceEEeccCCceEEEEccccccCccc--cc--ccccCCCeEEeeeccccCccE
Confidence            3456667777766               6778999999999986654333221  11  111112223345567899999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCC----------------------------------------------------
Q 005473          559 ESCHFSPDGKLLATGGHDKKAVLWCTES----------------------------------------------------  586 (695)
Q Consensus       559 ~~v~fspdg~~LaSgs~Dg~V~IWDl~t----------------------------------------------------  586 (695)
                      +|++|+|+|.+|++|++|++|++.-.+.                                                    
T Consensus        93 yc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~  172 (350)
T KOG0641|consen   93 YCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR  172 (350)
T ss_pred             EEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC
Confidence            9999999999999999999999874421                                                    


Q ss_pred             CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec--C-----CCCeEEEEEecCCCeEEEEE
Q 005473          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG--H-----STTVMSLDFHPSKEDLLCSC  659 (695)
Q Consensus       587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~g--h-----~~~V~sl~fspdg~~llaSg  659 (695)
                      +.....+.+|++-|.++ ++.++-.+++|+.|.+||+||++-.. |+.++..  |     .+.|.+|+..|.|+ ++++|
T Consensus       173 g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~-~v~~l~~~~~~~glessavaav~vdpsgr-ll~sg  249 (350)
T KOG0641|consen  173 GQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNS-CVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASG  249 (350)
T ss_pred             CCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccc-eeeeccCcccCCCcccceeEEEEECCCcc-eeeec
Confidence            12223344566666555 34456789999999999999999754 5665532  1     25799999999998 88899


Q ss_pred             eCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          660 DNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       660 s~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      -.|....+||++.+..+..|..|+..|.+|+| +|.
T Consensus       250 ~~dssc~lydirg~r~iq~f~phsadir~vrf-sp~  284 (350)
T KOG0641|consen  250 HADSSCMLYDIRGGRMIQRFHPHSADIRCVRF-SPG  284 (350)
T ss_pred             cCCCceEEEEeeCCceeeeeCCCccceeEEEe-CCC
Confidence            99999999999999999999999999999999 984

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.78  E-value=6.1e-19  Score=199.07  Aligned_cols=142  Identities=27%  Similarity=0.417  Sum_probs=123.6

Q ss_pred             EEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-----------------------------------------
Q 005473          549 QLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-----------------------------------------  586 (695)
Q Consensus       549 ~~l~-~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t-----------------------------------------  586 (695)
                      ..+. +|.+.|.|+.||+||+|||+||.|+.|+||-+..                                         
T Consensus       260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            4455 8999999999999999999999999999996532                                         


Q ss_pred             -------------------CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEE
Q 005473          587 -------------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD  647 (695)
Q Consensus       587 -------------------~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~  647 (695)
                                         .++++.+.||.+.|.++.|+.+ .+|+++|.|+|||+|++.. +.|+++|. |...|+||+
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~-~~CL~~F~-HndfVTcVa  416 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGR-KECLKVFS-HNDFVTCVA  416 (712)
T ss_pred             ccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCC-cceeeEEe-cCCeeEEEE
Confidence                               1233446689999999999976 6999999999999999996 55799987 999999999


Q ss_pred             EecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          648 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       648 fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      |+|....+|++|+-||.||||++...+.+.....+ +-||+|+| .||
T Consensus       417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy-~Pd  462 (712)
T KOG0283|consen  417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCY-SPD  462 (712)
T ss_pred             ecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEe-ccC
Confidence            99988889999999999999999987777666555 88999999 996

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.78  E-value=7.2e-18  Score=166.18  Aligned_cols=200  Identities=17%  Similarity=0.244  Sum_probs=141.9

Q ss_pred             cccCCCCCceEEEEecCCCccccccCC--------ccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCcee
Q 005473          474 LQHNGASSKSLLMFGSDGMGSLTSAPN--------QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF  545 (695)
Q Consensus       474 l~~s~s~~~s~l~~~~dg~~~la~s~~--------~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~  545 (695)
                      .-+....++++..|+|.....+..-..        .+.....-+++|+.|.-|.+|++..+                   
T Consensus        31 Y~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG-------------------   91 (307)
T KOG0316|consen   31 YCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG-------------------   91 (307)
T ss_pred             EEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccC-------------------
Confidence            344567889999999876533222111        01112234566667777777755443                   


Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eEEEEeccc---------------------------
Q 005473          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLEEH---------------------------  596 (695)
Q Consensus       546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~--~~~~~l~~H---------------------------  596 (695)
                      +.++.+++|.+.|+.|.|+.+...+++|+.|.+|++||++..  +++.++..-                           
T Consensus        92 kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtyd  171 (307)
T KOG0316|consen   92 KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYD  171 (307)
T ss_pred             eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEE
Confidence            567788999999999999999999999999999999999752  333333222                           


Q ss_pred             -----------CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEE--EEecCCCeEEEEEeCCC
Q 005473          597 -----------TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL--DFHPSKEDLLCSCDNNS  663 (695)
Q Consensus       597 -----------~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl--~fspdg~~llaSgs~Dg  663 (695)
                                 ..+|+|++|++++..++.++.|++||+.|-.+++. +..+.||...-..+  ++.... ..+++|++||
T Consensus       172 iR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl-L~sYkGhkn~eykldc~l~qsd-thV~sgSEDG  249 (307)
T KOG0316|consen  172 IRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKL-LKSYKGHKNMEYKLDCCLNQSD-THVFSGSEDG  249 (307)
T ss_pred             eecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHH-HHHhcccccceeeeeeeecccc-eeEEeccCCc
Confidence                       34567777777777777777777777777766654 66677776544433  333333 3567999999


Q ss_pred             cEEEEECCCCeEEEEEecCCCc-EEEEEEeCCC
Q 005473          664 EIRYWSINNGSCAGVFKNFFES-FVSVRVVQPR  695 (695)
Q Consensus       664 ~IriWDl~tg~~v~~~~~h~~~-VtsVaf~sPd  695 (695)
                      .|++||+-....+..+..|... |++|+| ||.
T Consensus       250 ~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~-hp~  281 (307)
T KOG0316|consen  250 KVYFWDLVDETQISKLSVVSTVIVTDLSC-HPT  281 (307)
T ss_pred             eEEEEEeccceeeeeeccCCceeEEeeec-ccC
Confidence            9999999999999999999888 899999 984

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=1.3e-19  Score=200.41  Aligned_cols=170  Identities=23%  Similarity=0.390  Sum_probs=154.1

Q ss_pred             CCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005473          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (695)
Q Consensus       504 ~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWD  583 (695)
                      ...+++++|++|..+-+|.....                   ..+..+.+|..+|.||.|+.+..+|+.|+.||+|++||
T Consensus        38 ~s~r~~~~Gg~~~k~~L~~i~kp-------------------~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wD   98 (825)
T KOG0267|consen   38 KSSRSLVTGGEDEKVNLWAIGKP-------------------NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWD   98 (825)
T ss_pred             ccceeeccCCCceeeccccccCC-------------------chhheeeccCCcceeeecCcchhhhcccccCCceeeee
Confidence            33488999999999989944221                   23345889999999999999999999999999999999


Q ss_pred             CCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC
Q 005473          584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (695)
Q Consensus       584 l~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg  663 (695)
                      ++..+.++++.+|...+..|.|+|-+.++++|+.|+.+++||++..+ |...+.+|...|.++.|+|+|. ++++|++|.
T Consensus        99 leeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G-c~~~~~s~~~vv~~l~lsP~Gr-~v~~g~ed~  176 (825)
T KOG0267|consen   99 LEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG-CSHTYKSHTRVVDVLRLSPDGR-WVASGGEDN  176 (825)
T ss_pred             hhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC-ceeeecCCcceeEEEeecCCCc-eeeccCCcc
Confidence            99999999999999999999999999999999999999999999744 7999999999999999999998 677999999


Q ss_pred             cEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          664 EIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       664 ~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +|+|||+..|+.+..|+.|.+.|.++.| ||.
T Consensus       177 tvki~d~~agk~~~ef~~~e~~v~sle~-hp~  207 (825)
T KOG0267|consen  177 TVKIWDLTAGKLSKEFKSHEGKVQSLEF-HPL  207 (825)
T ss_pred             eeeeeccccccccccccccccccccccc-Cch
Confidence            9999999999999999999999999999 983

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.78  E-value=7.5e-18  Score=191.23  Aligned_cols=163  Identities=23%  Similarity=0.379  Sum_probs=146.0

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEE-ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL-IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~-l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl  584 (695)
                      +.++.+++.|.++++|+...+                   ..+.. +.+|.+.|.++.|..-+.+|++|+.|++++|||+
T Consensus       218 ~~~~~~~s~~~tl~~~~~~~~-------------------~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~  278 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLWDLNNG-------------------YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDC  278 (537)
T ss_pred             cCeEEecCCCceeEEeecccc-------------------eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEec
Confidence            478899999999999954322                   34445 8999999999999887889999999999999999


Q ss_pred             CCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc
Q 005473          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (695)
Q Consensus       585 ~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~  664 (695)
                      .+++|..++.+|.+.|.++...+  .++++|+.|.+|+||++.++. ++.++.+|.+.|.+|.++  ++ ++++|+.|++
T Consensus       279 ~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~-~l~l~~~h~~~V~~v~~~--~~-~lvsgs~d~~  352 (537)
T KOG0274|consen  279 STGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGA-CLNLLRGHTGPVNCVQLD--EP-LLVSGSYDGT  352 (537)
T ss_pred             CCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcc-eEEEeccccccEEEEEec--CC-EEEEEecCce
Confidence            99999999999999999998864  578889999999999999866 589999999999999998  33 7889999999


Q ss_pred             EEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          665 IRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       665 IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      |+|||+.+++|+.++.+|+..|+++.| .+
T Consensus       353 v~VW~~~~~~cl~sl~gH~~~V~sl~~-~~  381 (537)
T KOG0274|consen  353 VKVWDPRTGKCLKSLSGHTGRVYSLIV-DS  381 (537)
T ss_pred             EEEEEhhhceeeeeecCCcceEEEEEe-cC
Confidence            999999999999999999999999987 54

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.78  E-value=1.1e-17  Score=167.61  Aligned_cols=185  Identities=15%  Similarity=0.235  Sum_probs=161.3

Q ss_pred             ccccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEec
Q 005473          473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP  552 (695)
Q Consensus       473 ~l~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~  552 (695)
                      .+...+.++.+-+.|+.+|               .++.+++.|.++.+|.+.++                   ..+.++.
T Consensus         4 i~l~GHERplTqiKyN~eG---------------DLlFscaKD~~~~vw~s~nG-------------------erlGty~   49 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREG---------------DLLFSCAKDSTPTVWYSLNG-------------------ERLGTYD   49 (327)
T ss_pred             cccccCccccceEEecCCC---------------cEEEEecCCCCceEEEecCC-------------------ceeeeec
Confidence            3455678899999999888               78999999999999977555                   3567899


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec--------------------------------------
Q 005473          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--------------------------------------  594 (695)
Q Consensus       553 ~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~--------------------------------------  594 (695)
                      +|++.|.||..+.+.+++++|+.|.++++||+++|+++..++                                      
T Consensus        50 GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~  129 (327)
T KOG0643|consen   50 GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRD  129 (327)
T ss_pred             CCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccC
Confidence            999999999999999999999999999999999887665543                                      


Q ss_pred             ---------------ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEE
Q 005473          595 ---------------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC  659 (695)
Q Consensus       595 ---------------~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSg  659 (695)
                                     .+.+.++.+-|.|-+.+|++|..||.|.+||++++...+.....|...|+.+.|++|.. +++++
T Consensus       130 ~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T-~FiT~  208 (327)
T KOG0643|consen  130 DSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT-YFITG  208 (327)
T ss_pred             ChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc-eEEec
Confidence                           24456788889999999999999999999999998887888889999999999999987 56699


Q ss_pred             eCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          660 DNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       660 s~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      +.|.+-++||+++-++++++. ...||.+.++ +|
T Consensus       209 s~Dttakl~D~~tl~v~Kty~-te~PvN~aai-sP  241 (327)
T KOG0643|consen  209 SKDTTAKLVDVRTLEVLKTYT-TERPVNTAAI-SP  241 (327)
T ss_pred             ccCccceeeeccceeeEEEee-ecccccceec-cc
Confidence            999999999999999999996 4468899888 87

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.78  E-value=3.6e-18  Score=182.71  Aligned_cols=165  Identities=24%  Similarity=0.375  Sum_probs=137.0

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEE
Q 005473          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWC  583 (695)
Q Consensus       505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg-~~LaSgs~Dg~V~IWD  583 (695)
                      ..+++++|...|.|++|+...                   -..+..+.+|+.+|..+.|+|.+ ..|++|++|+.+++||
T Consensus        79 DG~LlaaGD~sG~V~vfD~k~-------------------r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d  139 (487)
T KOG0310|consen   79 DGRLLAAGDESGHVKVFDMKS-------------------RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWD  139 (487)
T ss_pred             CCeEEEccCCcCcEEEecccc-------------------HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEE
Confidence            348899999999999995211                   12346678999999999999965 4788889999999999


Q ss_pred             CCCCeEEEEecccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC
Q 005473          584 TESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (695)
Q Consensus       584 l~t~~~~~~l~~H~~~V~~v~~spd-g~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D  662 (695)
                      +.+......+.+|++.|.|.+|+|. +.+++|||.||+||+||++.....+.++. |..+|.++.|-|.|. +|++++ .
T Consensus       140 ~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs-~iasAg-G  216 (487)
T KOG0310|consen  140 LSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGS-LIASAG-G  216 (487)
T ss_pred             cCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCC-EEEEcC-C
Confidence            9998887789999999999999995 55889999999999999998755456665 889999999999988 666776 5


Q ss_pred             CcEEEEECCCC-eEEEEEecCCCcEEEEEE
Q 005473          663 SEIRYWSINNG-SCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       663 g~IriWDl~tg-~~v~~~~~h~~~VtsVaf  691 (695)
                      ..|+|||+.+| +.+..+..|...|||+++
T Consensus       217 n~vkVWDl~~G~qll~~~~~H~KtVTcL~l  246 (487)
T KOG0310|consen  217 NSVKVWDLTTGGQLLTSMFNHNKTVTCLRL  246 (487)
T ss_pred             CeEEEEEecCCceehhhhhcccceEEEEEe
Confidence            68999999965 445555559999999998

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.78  E-value=1.2e-18  Score=194.30  Aligned_cols=184  Identities=18%  Similarity=0.291  Sum_probs=152.7

Q ss_pred             cccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecC
Q 005473          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA  553 (695)
Q Consensus       474 l~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~  553 (695)
                      +...+.+.+..+.|++...              ++|++||.|++|++|+.....                   -+.++.+
T Consensus       128 ~f~EH~Rs~~~ldfh~tep--------------~iliSGSQDg~vK~~DlR~~~-------------------S~~t~~~  174 (839)
T KOG0269|consen  128 VFNEHERSANKLDFHSTEP--------------NILISGSQDGTVKCWDLRSKK-------------------SKSTFRS  174 (839)
T ss_pred             HhhhhccceeeeeeccCCc--------------cEEEecCCCceEEEEeeeccc-------------------ccccccc
Confidence            4556778888888887665              899999999999999775442                   1233455


Q ss_pred             CCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 005473          554 STSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (695)
Q Consensus       554 H~~~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~t-~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~  631 (695)
                      ....|..|.|+| .+.+|+++.+.|.|.+||++. .++...+.+|.++|.|+.|+|+..+|||||.|++|+|||+.+.+.
T Consensus       175 nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~  254 (839)
T KOG0269|consen  175 NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA  254 (839)
T ss_pred             cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc
Confidence            677899999999 577899999999999999975 456778899999999999999999999999999999999986553


Q ss_pred             -eEEEEecCCCCeEEEEEecCCCeEEEEEe--CCCcEEEEECCC-CeEEEEEecCCCcEEEEEE
Q 005473          632 -SLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINN-GSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       632 -~l~~~~gh~~~V~sl~fspdg~~llaSgs--~Dg~IriWDl~t-g~~v~~~~~h~~~VtsVaf  691 (695)
                       .+.++. ....|.+|.|.|...+.|++|+  .|..|+|||++. .-+..+|..|++.|+.|+|
T Consensus       255 ~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W  317 (839)
T KOG0269|consen  255 KPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAW  317 (839)
T ss_pred             cceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceec
Confidence             223332 3467999999999999998887  688999999975 4677889999999999999

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.78  E-value=4.9e-18  Score=188.68  Aligned_cols=183  Identities=20%  Similarity=0.320  Sum_probs=151.4

Q ss_pred             CCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005473          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (695)
Q Consensus       503 ~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IW  582 (695)
                      .+....+++||.|.+|++|+..--.+......+      -.......++ .-.+.|.|+.+||||++||.+--|.+|+||
T Consensus       463 ~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k------~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVy  535 (888)
T KOG0306|consen  463 SPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKK------VLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVY  535 (888)
T ss_pred             cCCCCceEEecCCcEEEEEeEEEEeccCcccce------eeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEE
Confidence            334467899999999999965321110000000      0111122222 234569999999999999999999999999


Q ss_pred             ECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC
Q 005473          583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (695)
Q Consensus       583 Dl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D  662 (695)
                      -+++.+....+.||.-+|.||..+||+.+++|||.|+.|++|-++-|. |-+.+.+|.+.|++|.|.|. .+++++|+.|
T Consensus       536 flDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD-CHKS~fAHdDSvm~V~F~P~-~~~FFt~gKD  613 (888)
T KOG0306|consen  536 FLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD-CHKSFFAHDDSVMSVQFLPK-THLFFTCGKD  613 (888)
T ss_pred             EecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccch-hhhhhhcccCceeEEEEccc-ceeEEEecCc
Confidence            999999999999999999999999999999999999999999999766 68899999999999999996 5688899999


Q ss_pred             CcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          663 SEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       663 g~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +.|+.||-.+.+++.++.+|...|+|++. .|+
T Consensus       614 ~kvKqWDg~kFe~iq~L~~H~~ev~cLav-~~~  645 (888)
T KOG0306|consen  614 GKVKQWDGEKFEEIQKLDGHHSEVWCLAV-SPN  645 (888)
T ss_pred             ceEEeechhhhhhheeeccchheeeeeEE-cCC
Confidence            99999999999999999999999999998 875

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.78  E-value=1.6e-17  Score=177.76  Aligned_cols=165  Identities=24%  Similarity=0.331  Sum_probs=139.9

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTE  585 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspd-g~~LaSgs~Dg~V~IWDl~  585 (695)
                      ..+++|+.|+.+++|+....                .   ....+.+|++.|.|.+|+|- +..++||++||+|++||++
T Consensus       124 t~l~s~sDd~v~k~~d~s~a----------------~---v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR  184 (487)
T KOG0310|consen  124 TMLVSGSDDKVVKYWDLSTA----------------Y---VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTR  184 (487)
T ss_pred             eEEEecCCCceEEEEEcCCc----------------E---EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEec
Confidence            67888988888999965332                2   35678899999999999995 4589999999999999999


Q ss_pred             CC-eEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc
Q 005473          586 SF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (695)
Q Consensus       586 t~-~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~  664 (695)
                      .. ..+.++. |..+|..|.+-|.|.++++++ ...|+|||+-++...+..+..|...|+|+++..++..|+ +|+-|+.
T Consensus       185 ~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLl-S~sLD~~  261 (487)
T KOG0310|consen  185 SLTSRVVELN-HGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLL-SGSLDRH  261 (487)
T ss_pred             cCCceeEEec-CCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEe-ecccccc
Confidence            87 5555554 899999999999999999987 457999999988776666666999999999999987655 9999999


Q ss_pred             EEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          665 IRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       665 IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      |++||+.+-+.+..++ ..++|.+|+. +|+
T Consensus       262 VKVfd~t~~Kvv~s~~-~~~pvLsiav-s~d  290 (487)
T KOG0310|consen  262 VKVFDTTNYKVVHSWK-YPGPVLSIAV-SPD  290 (487)
T ss_pred             eEEEEccceEEEEeee-cccceeeEEe-cCC
Confidence            9999999889998885 5589999998 874

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.77  E-value=1.6e-17  Score=168.66  Aligned_cols=218  Identities=17%  Similarity=0.241  Sum_probs=169.3

Q ss_pred             cccccCCCCCceEEEEecCCCc---------cccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCC------------
Q 005473          472 PTLQHNGASSKSLLMFGSDGMG---------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPR------------  530 (695)
Q Consensus       472 ~~l~~s~s~~~s~l~~~~dg~~---------~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~------------  530 (695)
                      -++..++..+..++.|...+..         .-++-.-.+....+.+.+++.|.+|+.|++..+...+            
T Consensus        59 gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~  138 (338)
T KOG0265|consen   59 GSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSL  138 (338)
T ss_pred             CCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeec
Confidence            3567778888888888865541         1111111234455788899999999999887664221            


Q ss_pred             ---------------CccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc
Q 005473          531 ---------------DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE  595 (695)
Q Consensus       531 ---------------~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~  595 (695)
                                     |...++||..+.   ..++++ ..+..++++.|..++..+++|+-|+.|++||++......++.|
T Consensus       139 ~p~rrg~~lv~SgsdD~t~kl~D~R~k---~~~~t~-~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsG  214 (338)
T KOG0265|consen  139 DPSRRGPQLVCSGSDDGTLKLWDIRKK---EAIKTF-ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSG  214 (338)
T ss_pred             CccccCCeEEEecCCCceEEEEeeccc---chhhcc-ccceeEEEEEecccccceeeccccCceeeeccccCcceEEeec
Confidence                           122233333221   111111 2355699999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC---CeeEEEEecCCC----CeEEEEEecCCCeEEEEEeCCCcEEEE
Q 005473          596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENP---DYSLRTFTGHST----TVMSLDFHPSKEDLLCSCDNNSEIRYW  668 (695)
Q Consensus       596 H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~---~~~l~~~~gh~~----~V~sl~fspdg~~llaSgs~Dg~IriW  668 (695)
                      |.+.|+.+..+|+|.++.+-+.|.+|++||++..   ..|+..+.+|..    ....++|+|++. .+.+|+.|..|++|
T Consensus       215 h~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~-~i~ags~dr~vyvw  293 (338)
T KOG0265|consen  215 HADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGT-KITAGSADRFVYVW  293 (338)
T ss_pred             ccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCC-ccccccccceEEEe
Confidence            9999999999999999999999999999999742   346888888753    346789999987 67799999999999


Q ss_pred             ECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          669 SINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       669 Dl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      |.....++..+.||.+.|.+++| ||.
T Consensus       294 d~~~r~~lyklpGh~gsvn~~~F-hp~  319 (338)
T KOG0265|consen  294 DTTSRRILYKLPGHYGSVNEVDF-HPT  319 (338)
T ss_pred             ecccccEEEEcCCcceeEEEeee-cCC
Confidence            99998999999999999999999 994

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.77  E-value=1.1e-17  Score=193.13  Aligned_cols=202  Identities=20%  Similarity=0.321  Sum_probs=164.3

Q ss_pred             cCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 005473          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (695)
Q Consensus       476 ~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~  555 (695)
                      ..+...+.|+.|++||               .++|+||.|+.|.+|.... ......++..-.......++.+..+++|.
T Consensus        66 ~~h~~sv~CVR~S~dG---------------~~lAsGSDD~~v~iW~~~~-~~~~~~fgs~g~~~~vE~wk~~~~l~~H~  129 (942)
T KOG0973|consen   66 DDHDGSVNCVRFSPDG---------------SYLASGSDDRLVMIWERAE-IGSGTVFGSTGGAKNVESWKVVSILRGHD  129 (942)
T ss_pred             ccccCceeEEEECCCC---------------CeEeeccCcceEEEeeecc-cCCcccccccccccccceeeEEEEEecCC
Confidence            3456788999999988               7899999999999996543 11111111111122335778999999999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE
Q 005473          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~  635 (695)
                      ..|..++|+|++.+|++++.|++|.|||..+.+++.++++|.+.|..+.|.|-|++|++-++|++|+||++.+... .+.
T Consensus       130 ~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i-~k~  208 (942)
T KOG0973|consen  130 SDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGI-EKS  208 (942)
T ss_pred             CccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEccccee-eEe
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999876443 555


Q ss_pred             EecCC------CCeEEEEEecCCCeEEEEEe---CCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          636 FTGHS------TTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       636 ~~gh~------~~V~sl~fspdg~~llaSgs---~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +.++.      ..+..+.|+|||.+|.+.-+   .-.+|.|.+-.+-++-..|-||..+|.+++| +|.
T Consensus       209 It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrF-nP~  276 (942)
T KOG0973|consen  209 ITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRF-NPK  276 (942)
T ss_pred             eccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEe-ChH
Confidence            55543      35788999999995543322   3457889998888888999999999999999 984

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.77  E-value=3.1e-18  Score=183.59  Aligned_cols=188  Identities=20%  Similarity=0.225  Sum_probs=148.7

Q ss_pred             CCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEE--EecCC
Q 005473          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQ--LIPAS  554 (695)
Q Consensus       477 s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~--~l~~H  554 (695)
                      .+....++-+|+|+..              .-+.+++.|+++++|++.....               ....++  ...+.
T Consensus       266 GHia~lt~g~whP~~k--------------~~FlT~s~DgtlRiWdv~~~k~---------------q~qVik~k~~~g~  316 (641)
T KOG0772|consen  266 GHIAELTCGCWHPDNK--------------EEFLTCSYDGTLRIWDVNNTKS---------------QLQVIKTKPAGGK  316 (641)
T ss_pred             CceeeeeccccccCcc--------------cceEEecCCCcEEEEecCCchh---------------heeEEeeccCCCc
Confidence            3445667777777665              5568889999999997754421               011111  12245


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE---EEEecccCC--CeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 005473          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTLEEHTQ--WITDVRFSPSLSRLATSSADRTVRVWDTENP  629 (695)
Q Consensus       555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~---~~~l~~H~~--~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~  629 (695)
                      .-+|+.|+|++||++||+|+.||.|-+|+......   .+.-.+|..  .|+||.|+++|++|++-+.|++++|||++..
T Consensus       317 Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~  396 (641)
T KOG0772|consen  317 RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF  396 (641)
T ss_pred             ccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence            56799999999999999999999999999854332   233367877  8999999999999999999999999999999


Q ss_pred             CeeEEEEecCCC--CeEEEEEecCCCeEEEEEe------CCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          630 DYSLRTFTGHST--TVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       630 ~~~l~~~~gh~~--~V~sl~fspdg~~llaSgs------~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +.|+.++.+...  .-+.++|+|+.+ ||++|.      ..|.+.+||..+-..+..+.-....|..+.| ||.
T Consensus       397 kkpL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~W-hpk  468 (641)
T KOG0772|consen  397 KKPLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLW-HPK  468 (641)
T ss_pred             ccchhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEee-cch
Confidence            988888776543  457899999987 666875      3578999999999999999888889999999 995

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.76  E-value=4e-19  Score=189.62  Aligned_cols=144  Identities=22%  Similarity=0.444  Sum_probs=133.5

Q ss_pred             eeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 005473          546 TEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV  623 (695)
Q Consensus       546 ~~v~~l~~H~~~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~t-~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrv  623 (695)
                      +.+.++.+|+..|+++.|.| .+.+|++|+.|+.|+||++.. ++|++++.+|..+|.+++|+.+|..|+|+|.|++|++
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl  284 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL  284 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence            56788999999999999999 899999999999999999976 8999999999999999999999999999999999999


Q ss_pred             EECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       624 WDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf  691 (695)
                      ||++++.. +..|. ....++|+.|+|++..+|++|+.|+.|+.||+|+++.+.++..|-++|.+|.|
T Consensus       285 wDtETG~~-~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F  350 (503)
T KOG0282|consen  285 WDTETGQV-LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITF  350 (503)
T ss_pred             eccccceE-EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEE
Confidence            99999874 66654 33568999999999889999999999999999999999999999999999998

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.76  E-value=1e-17  Score=167.25  Aligned_cols=180  Identities=22%  Similarity=0.304  Sum_probs=142.8

Q ss_pred             CCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeE
Q 005473          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE  559 (695)
Q Consensus       480 ~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~  559 (695)
                      ..+..+.|..+|               ..+++|+.|+++++|.+....                 +..-...++|.+.|.
T Consensus        21 ~~v~Sv~wn~~g---------------~~lasgs~dktv~v~n~e~~r-----------------~~~~~~~~gh~~svd   68 (313)
T KOG1407|consen   21 QKVHSVAWNCDG---------------TKLASGSFDKTVSVWNLERDR-----------------FRKELVYRGHTDSVD   68 (313)
T ss_pred             hcceEEEEcccC---------------ceeeecccCCceEEEEecchh-----------------hhhhhcccCCCcchh
Confidence            356678888877               568999999999999764431                 111123456776677


Q ss_pred             EEEEcCC-CCEEEEEeCCCcEEEEECCCCeEE------------------------------------------------
Q 005473          560 SCHFSPD-GKLLATGGHDKKAVLWCTESFTVK------------------------------------------------  590 (695)
Q Consensus       560 ~v~fspd-g~~LaSgs~Dg~V~IWDl~t~~~~------------------------------------------------  590 (695)
                      .++|+|. ..+|++++.|++|++||++.++++                                                
T Consensus        69 ql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~  148 (313)
T KOG1407|consen   69 QLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF  148 (313)
T ss_pred             hheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc
Confidence            7777663 346677777777777766543332                                                


Q ss_pred             ----------------------------------EEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 005473          591 ----------------------------------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (695)
Q Consensus       591 ----------------------------------~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~  636 (695)
                                                        ..+.+|...+.||.|+|+|++||+|+.|..+.+||+.. -.|++.+
T Consensus       149 e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E-LiC~R~i  227 (313)
T KOG1407|consen  149 EVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE-LICERCI  227 (313)
T ss_pred             eeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH-hhhheee
Confidence                                              22336888899999999999999999999999999996 5689999


Q ss_pred             ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       637 ~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ..+.=+|..|.|+.||+ +||+|++|..|-|=++.+|..+..++ +.++..+|+| ||.
T Consensus       228 sRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAW-HPk  283 (313)
T KOG1407|consen  228 SRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAW-HPK  283 (313)
T ss_pred             ccccCceEEEEeccCcc-eeeccCccceEEeEecccCCeEEEee-ccCCceeEEe-cCC
Confidence            99999999999999998 78899999999999999999999985 6678899999 995

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.76  E-value=1.7e-18  Score=193.02  Aligned_cols=173  Identities=18%  Similarity=0.361  Sum_probs=146.6

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEE
Q 005473          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWC  583 (695)
Q Consensus       505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspd-g~~LaSgs~Dg~V~IWD  583 (695)
                      .+++|++++..|.|.+|+.....                .-+.+..+..|+..|+++.|++. -.+|++|+.||+|++||
T Consensus        99 ~~NlIAT~s~nG~i~vWdlnk~~----------------rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~D  162 (839)
T KOG0269|consen   99 YSNLIATCSTNGVISVWDLNKSI----------------RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWD  162 (839)
T ss_pred             hhhhheeecCCCcEEEEecCccc----------------cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEe
Confidence            35899999999999999775421                11234566789999999999885 56899999999999999


Q ss_pred             CCCCeEEEEecccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC
Q 005473          584 TESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (695)
Q Consensus       584 l~t~~~~~~l~~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D  662 (695)
                      ++..+.+.++.+....|.+|.|+| .+..|+++.+.|.+.+||+|.+..|+..+.+|.+.|.|+.|+|++. +||+||.|
T Consensus       163 lR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~-~lATGGRD  241 (839)
T KOG0269|consen  163 LRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE-WLATGGRD  241 (839)
T ss_pred             eecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCc-eeeecCCC
Confidence            999888888988899999999999 4778999999999999999999999999999999999999999765 88899999


Q ss_pred             CcEEEEECCCCeEEEEEec-CCCcEEEEEEeCCC
Q 005473          663 SEIRYWSINNGSCAGVFKN-FFESFVSVRVVQPR  695 (695)
Q Consensus       663 g~IriWDl~tg~~v~~~~~-h~~~VtsVaf~sPd  695 (695)
                      +.|+|||+.+++.-..+.. ...+|..|+| =|.
T Consensus       242 K~vkiWd~t~~~~~~~~tInTiapv~rVkW-RP~  274 (839)
T KOG0269|consen  242 KMVKIWDMTDSRAKPKHTINTIAPVGRVKW-RPA  274 (839)
T ss_pred             ccEEEEeccCCCccceeEEeecceeeeeee-ccC
Confidence            9999999987654333332 3478899999 774

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.76  E-value=3.8e-17  Score=172.50  Aligned_cols=199  Identities=16%  Similarity=0.221  Sum_probs=155.7

Q ss_pred             cccCCCCCceEEEEecCCCccc--------cccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCcee
Q 005473          474 LQHNGASSKSLLMFGSDGMGSL--------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF  545 (695)
Q Consensus       474 l~~s~s~~~s~l~~~~dg~~~l--------a~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~  545 (695)
                      ....|..++..+.|.......|        .+..-.+......+++++.|..|++|.++..                   
T Consensus       233 ~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~-------------------  293 (506)
T KOG0289|consen  233 KILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS-------------------  293 (506)
T ss_pred             cceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc-------------------
Confidence            3444555666666654433111        1111123444577889999999999965443                   


Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc--cCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 005473          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRV  623 (695)
Q Consensus       546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~--H~~~V~~v~~spdg~~LaTgs~DgtIrv  623 (695)
                      .+...++.|..+|+.+..+|.|.||++++.||+..+.|++++.++.....  ..-.+++.+|+|||-+|.+|..|+.|+|
T Consensus       294 s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vki  373 (506)
T KOG0289|consen  294 SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKI  373 (506)
T ss_pred             cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEE
Confidence            23455678999999999999999999999999999999999998866643  2245899999999999999999999999


Q ss_pred             EECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecC-CCcEEEEEEeCC
Q 005473          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF-FESFVSVRVVQP  694 (695)
Q Consensus       624 WDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h-~~~VtsVaf~sP  694 (695)
                      ||+.+... +..|.+|.+.|..+.|+.+| ++++++.+|++|++||+|+-+...+|.-. ..+|.++.| .+
T Consensus       374 wdlks~~~-~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~f-D~  442 (506)
T KOG0289|consen  374 WDLKSQTN-VAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSF-DQ  442 (506)
T ss_pred             EEcCCccc-cccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccceeeccccccceeEEE-cC
Confidence            99998774 89999999999999999886 57789999999999999988877777633 236888888 64

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.76  E-value=1.5e-17  Score=191.92  Aligned_cols=179  Identities=22%  Similarity=0.375  Sum_probs=147.9

Q ss_pred             cEEEEee--CCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005473          507 RFVDDGS--LDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (695)
Q Consensus       507 ~~lasgS--~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl  584 (695)
                      ..+++|+  .|+.+++|....-.       +..........+++.+...|.+.|+|+.|++||++||+|++|+.|.||..
T Consensus        26 ~~~aTgGq~~d~~~~iW~~~~vl-------~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~   98 (942)
T KOG0973|consen   26 VKFATGGQVLDGGIVIWSQDPVL-------DEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWER   98 (942)
T ss_pred             eeEecCCccccccceeecccccc-------chhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeee
Confidence            4568888  99999999543211       00111111123567788899999999999999999999999999999987


Q ss_pred             CC------------------CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEE
Q 005473          585 ES------------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL  646 (695)
Q Consensus       585 ~t------------------~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl  646 (695)
                      ..                  .+++..+.+|.+.|.+++|+|++.+|++++.|++|.|||.++. .+++++.+|.+.|-.+
T Consensus        99 ~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~VKGv  177 (942)
T KOG0973|consen   99 AEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLVKGV  177 (942)
T ss_pred             cccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-eeeeeeecccccccce
Confidence            62                  3467889999999999999999999999999999999999998 5699999999999999


Q ss_pred             EEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCC------CcEEEEEEeCCC
Q 005473          647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFF------ESFVSVRVVQPR  695 (695)
Q Consensus       647 ~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~------~~VtsVaf~sPd  695 (695)
                      .|.|-|+ +||+=+.|++|+||.+.+-.+.+.+.++.      .-+..+.| +||
T Consensus       178 s~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSW-SPD  230 (942)
T KOG0973|consen  178 SWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSW-SPD  230 (942)
T ss_pred             EECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeeccc-CCC
Confidence            9999998 78899999999999988777777777553      35577888 886

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.75  E-value=9.1e-18  Score=177.82  Aligned_cols=190  Identities=21%  Similarity=0.295  Sum_probs=148.4

Q ss_pred             CCCCcEEEEeeCCCcEEEEeCC--CCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcE
Q 005473          503 TDMDRFVDDGSLDDNVESFLSP--DDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKA  579 (695)
Q Consensus       503 ~~~~~~lasgS~D~~V~lw~~~--~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg-~~LaSgs~Dg~V  579 (695)
                      ....+|+|.|+.|..|.+|+..  +...+....+......+...-+.-..-.+|++.|.++.|+..- +.||||+.|++|
T Consensus       189 ~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV  268 (463)
T KOG0270|consen  189 GGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTV  268 (463)
T ss_pred             CCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceE
Confidence            3445899999999999999652  2222222233222111111111112234799999999998864 489999999999


Q ss_pred             EEEECCCCeEEEEecccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEE
Q 005473          580 VLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS  658 (695)
Q Consensus       580 ~IWDl~t~~~~~~l~~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaS  658 (695)
                      ++||+.++++..++..|.+.|.++.|+| ....|++||.|++|.+.|+|.....-..+. ..+.|-.++|+|.....+++
T Consensus       269 ~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~  347 (463)
T KOG0270|consen  269 KLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFV  347 (463)
T ss_pred             EEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEE
Confidence            9999999999999999999999999999 477899999999999999996443222222 34679999999999999999


Q ss_pred             EeCCCcEEEEECCC-CeEEEEEecCCCcEEEEEEeCC
Q 005473          659 CDNNSEIRYWSINN-GSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       659 gs~Dg~IriWDl~t-g~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      +..||+|+-+|+|. ++++.++++|.++|.+|++ ++
T Consensus       348 ~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~-n~  383 (463)
T KOG0270|consen  348 STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSV-NI  383 (463)
T ss_pred             ecCCceEEeeecCCCCCceeEEEeccCCcceEEe-cC
Confidence            99999999999997 5999999999999999998 64

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.75  E-value=1.5e-17  Score=173.04  Aligned_cols=183  Identities=20%  Similarity=0.310  Sum_probs=144.5

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTE  585 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg-~~LaSgs~Dg~V~IWDl~  585 (695)
                      .++++=+..|.|.+|+...-...-....   -..+....+++.++.+|.+.=+.++|||-. ..|++|..-+.|++|-..
T Consensus       166 ~~~aswse~G~V~Vw~l~~~l~~l~~~~---~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~  242 (440)
T KOG0302|consen  166 VLCASWSENGRVQVWDLAPHLNALSEPG---LEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPS  242 (440)
T ss_pred             ceeeeecccCcEEEEEchhhhhhhcCcc---ccccccccCceEEecccCccceeeecccccccccccCccccceEeeeec
Confidence            5667777889999996643210000000   011124568899999999999999999932 247788888899999988


Q ss_pred             CCeEE---EEecccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCC--eeEEEEecCCCCeEEEEEecCCCeEEEEE
Q 005473          586 SFTVK---STLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSC  659 (695)
Q Consensus       586 t~~~~---~~l~~H~~~V~~v~~spd-g~~LaTgs~DgtIrvWDl~t~~--~~l~~~~gh~~~V~sl~fspdg~~llaSg  659 (695)
                      ++.-.   .-+.+|+..|.+++|+|. ...|++||.||+|+|||+|.+.  .|+.+ ..|.+.|..|.|+.+.+ +|++|
T Consensus       243 ~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~-lLasG  320 (440)
T KOG0302|consen  243 TGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREP-LLASG  320 (440)
T ss_pred             cCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcc-eeeec
Confidence            76543   345789999999999995 6789999999999999999873  23444 88999999999999887 89999


Q ss_pred             eCCCcEEEEECCC---CeEEEEEecCCCcEEEEEEeCCC
Q 005473          660 DNNSEIRYWSINN---GSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       660 s~Dg~IriWDl~t---g~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +.||+++|||+|.   +++|..|+-|..+|++|.| ||.
T Consensus       321 ~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW-~p~  358 (440)
T KOG0302|consen  321 GDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEW-HPH  358 (440)
T ss_pred             CCCceEEEEEhhhccCCCcceeEEeccCCeeEEEe-ccc
Confidence            9999999999985   6789999999999999999 984

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.75  E-value=1.3e-17  Score=169.65  Aligned_cols=198  Identities=15%  Similarity=0.239  Sum_probs=153.2

Q ss_pred             cCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 005473          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (695)
Q Consensus       476 ~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~  555 (695)
                      ..+..++.+-.|++||               .++++|+.|..|+++++..--... ....+...........++++..|.
T Consensus       109 t~HK~~cR~aafs~DG---------------~lvATGsaD~SIKildvermlaks-~~~em~~~~~qa~hPvIRTlYDH~  172 (430)
T KOG0640|consen  109 TSHKSPCRAAAFSPDG---------------SLVATGSADASIKILDVERMLAKS-KPKEMISGDTQARHPVIRTLYDHV  172 (430)
T ss_pred             eecccceeeeeeCCCC---------------cEEEccCCcceEEEeehhhhhhhc-chhhhccCCcccCCceEeehhhcc
Confidence            3455577778888887               799999999999999775321100 111111111222235688999999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe--cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE
Q 005473          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l--~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l  633 (695)
                      +.|+++.|+|....|++|+.|++|++||+......+.+  -....+|.++.|+|.|.+|+.|..-.++++||+.+-.. .
T Consensus       173 devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qc-f  251 (430)
T KOG0640|consen  173 DEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQC-F  251 (430)
T ss_pred             CcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeE-e
Confidence            99999999999999999999999999999654333222  22467899999999999999999999999999998542 3


Q ss_pred             EE---EecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe-cCC-CcEEEEEE
Q 005473          634 RT---FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-NFF-ESFVSVRV  691 (695)
Q Consensus       634 ~~---~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~-~h~-~~VtsVaf  691 (695)
                      ..   -..|.+.|++|.+++.++ ++++++.||.|++||--+++|+.+|. +|. ..|.+..|
T Consensus       252 vsanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~F  313 (430)
T KOG0640|consen  252 VSANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVF  313 (430)
T ss_pred             eecCcccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEE
Confidence            22   347899999999999998 77799999999999999999999998 564 46777777

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=2.7e-16  Score=161.13  Aligned_cols=195  Identities=21%  Similarity=0.301  Sum_probs=136.1

Q ss_pred             CCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCc---------------------------
Q 005473          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDR---------------------------  532 (695)
Q Consensus       480 ~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~---------------------------  532 (695)
                      ..+..+.|+.+|               .++++++.|.++++|++.++...+..                           
T Consensus        15 ~~i~sl~fs~~G---------------~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d   79 (311)
T KOG1446|consen   15 GKINSLDFSDDG---------------LLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKED   79 (311)
T ss_pred             CceeEEEecCCC---------------CEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCC
Confidence            356667777766               56677788888888887665322211                           


Q ss_pred             -cccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccc---------------
Q 005473          533 -VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH---------------  596 (695)
Q Consensus       533 -~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H---------------  596 (695)
                       ..+..+.   .+-+.++.+.||+..|++++.+|-+..++|++.|++|++||++..+|...+.--               
T Consensus        80 ~tIryLsl---~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA  156 (311)
T KOG1446|consen   80 DTIRYLSL---HDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFA  156 (311)
T ss_pred             CceEEEEe---ecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEE
Confidence             1111111   223567888999999999999999999999999999999999865554443211               


Q ss_pred             ------------------------------CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCe---
Q 005473          597 ------------------------------TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV---  643 (695)
Q Consensus       597 ------------------------------~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V---  643 (695)
                                                    ....+.|.|+|||+.++.+...+.+++.|.-+|.. +.++.++...-   
T Consensus       157 ~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~-~~tfs~~~~~~~~~  235 (311)
T KOG1446|consen  157 LANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV-KSTFSGYPNAGNLP  235 (311)
T ss_pred             EecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE-eeeEeeccCCCCcc
Confidence                                          22334455555555555554455555555544442 45555554332   


Q ss_pred             EEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec-CCCcEEEEEEeCCC
Q 005473          644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKN-FFESFVSVRVVQPR  695 (695)
Q Consensus       644 ~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~-h~~~VtsVaf~sPd  695 (695)
                      .+.+|.||+. ++++|+.||+|.+|++++|..+..+.+ +.+++.++.| +|.
T Consensus       236 ~~a~ftPds~-Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~f-nP~  286 (311)
T KOG1446|consen  236 LSATFTPDSK-FVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRF-NPR  286 (311)
T ss_pred             eeEEECCCCc-EEEEecCCCcEEEEEcCCCcEeeEecCCCCCCcccccc-CCc
Confidence            5778999998 555999999999999999999999998 7999999999 985

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.74  E-value=7.7e-17  Score=163.17  Aligned_cols=182  Identities=19%  Similarity=0.317  Sum_probs=141.9

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT  584 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl  584 (695)
                      .+++.+|+.|+.+.+|+.....+-+....-    .+..+.-....-.+|+..|.++.|-| |.-.+.+++.|++++|||+
T Consensus        56 grymlSGgadgsi~v~Dl~n~t~~e~s~li----~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDt  131 (397)
T KOG4283|consen   56 GRYMLSGGADGSIAVFDLQNATDYEASGLI----AKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDT  131 (397)
T ss_pred             ceEEeecCCCccEEEEEeccccchhhccce----eheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeec
Confidence            489999999999999988654322211110    01111011122347889999999998 5557889999999999999


Q ss_pred             CCCeEEEEecccCCCeEEEEEcCC---CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeC
Q 005473          585 ESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (695)
Q Consensus       585 ~t~~~~~~l~~H~~~V~~v~~spd---g~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~  661 (695)
                      .+.+....|+ ..+.|+.-+|+|-   ..++|+|..|-.|++-|+..+.. -.++.||.+.|.+|.|+|..+++|++|+.
T Consensus       132 nTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~-sH~LsGHr~~vlaV~Wsp~~e~vLatgsa  209 (397)
T KOG4283|consen  132 NTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF-SHTLSGHRDGVLAVEWSPSSEWVLATGSA  209 (397)
T ss_pred             ccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc-eeeeccccCceEEEEeccCceeEEEecCC
Confidence            9999888876 4678999999983   45788888899999999999774 89999999999999999999999999999


Q ss_pred             CCcEEEEECCCC-eEEEEEe--------------cCCCcEEEEEEeCC
Q 005473          662 NSEIRYWSINNG-SCAGVFK--------------NFFESFVSVRVVQP  694 (695)
Q Consensus       662 Dg~IriWDl~tg-~~v~~~~--------------~h~~~VtsVaf~sP  694 (695)
                      ||.||+||++.. .|..++.              +|.+.|..++| ..
T Consensus       210 Dg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~-tS  256 (397)
T KOG4283|consen  210 DGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAW-TS  256 (397)
T ss_pred             CceEEEEEeecccceeEEeecccCccCccccccccccceeeeeee-cc
Confidence            999999999864 3444332              66788888888 54

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.74  E-value=5.7e-18  Score=172.70  Aligned_cols=167  Identities=16%  Similarity=0.295  Sum_probs=140.5

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEe-cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l-~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~  585 (695)
                      .++++|+.||.|++|....+.                   +++.+ ++|+..|+|+.|+.|+..|++++.|.+|+|.-++
T Consensus       276 EMlAsGsqDGkIKvWri~tG~-------------------ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK  336 (508)
T KOG0275|consen  276 EMLASGSQDGKIKVWRIETGQ-------------------CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK  336 (508)
T ss_pred             HHhhccCcCCcEEEEEEecch-------------------HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc
Confidence            789999999999999665442                   22333 4799999999999999999999999999999999


Q ss_pred             CCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE------------------------------
Q 005473          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT------------------------------  635 (695)
Q Consensus       586 t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~------------------------------  635 (695)
                      .|++++.++||.+.|+...|.++|.++++++.||+|+||+.++.. |+.+                              
T Consensus       337 SGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktte-C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsn  415 (508)
T KOG0275|consen  337 SGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTE-CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSN  415 (508)
T ss_pred             cchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchh-hhhhccCCCCcccceeEEEcCCCCceEEEEcCCC
Confidence            999999999999999999999999999999999999999987643 2211                              


Q ss_pred             --------------Ee---cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          636 --------------FT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       636 --------------~~---gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                                    |.   ...+...+.+++|.|.+++ +.++|+.+++|.+-+|+..+++..|...|..++- ||.
T Consensus       416 tv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiY-cigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~H-HPH  490 (508)
T KOG0275|consen  416 TVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIY-CIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTH-HPH  490 (508)
T ss_pred             eEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEE-EEccCcEEEEEEeecCceeeeeeccccccccccc-Ccc
Confidence                          11   1123345667899998655 6677999999999999999999999999999988 883

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.74  E-value=4.4e-17  Score=166.00  Aligned_cols=201  Identities=21%  Similarity=0.379  Sum_probs=154.1

Q ss_pred             CCCCceEEEEecCCCccccc--------cCCccCCCCcEEEEeeCCCcEEEEe------CCCCCCCCCccc---------
Q 005473          478 GASSKSLLMFGSDGMGSLTS--------APNQLTDMDRFVDDGSLDDNVESFL------SPDDADPRDRVG---------  534 (695)
Q Consensus       478 ~s~~~s~l~~~~dg~~~la~--------s~~~l~~~~~~lasgS~D~~V~lw~------~~~~~~~~~~~~---------  534 (695)
                      .+.+.+...|+.....||..        .+..|.....+++++|.|.+..+|.      .+....+.+...         
T Consensus       166 ASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe  245 (481)
T KOG0300|consen  166 ASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDE  245 (481)
T ss_pred             cccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccc
Confidence            34455556666554433322        2223455568999999999999996      222111111111         


Q ss_pred             --cccc---cCCCce-eeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCC
Q 005473          535 --RSAE---VGKGFT-FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS  608 (695)
Q Consensus       535 --~~~d---~~~~~~-~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spd  608 (695)
                        +-.+   ..++.+ -.++..+.+|.+.|.|+.|-..|..+++++.|.+..+||+++++++..+.||....+.++-+|.
T Consensus       246 ~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt  325 (481)
T KOG0300|consen  246 HNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT  325 (481)
T ss_pred             cccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCc
Confidence              1111   112222 2456788999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-eEEEEEe
Q 005473          609 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFK  680 (695)
Q Consensus       609 g~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg-~~v~~~~  680 (695)
                      -++++|++.|.++|+||.+..-..+..|.||...|+++.|..+.+  +++|+.|.+|+|||+++- .++.++.
T Consensus       326 QrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~--vVSgSDDrTvKvWdLrNMRsplATIR  396 (481)
T KOG0300|consen  326 QRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR--VVSGSDDRTVKVWDLRNMRSPLATIR  396 (481)
T ss_pred             ceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc--eeecCCCceEEEeeeccccCcceeee
Confidence            999999999999999999976667899999999999999998865  669999999999999863 4555554

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.73  E-value=2.3e-17  Score=163.70  Aligned_cols=165  Identities=20%  Similarity=0.324  Sum_probs=142.5

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      +++.+|+.+..+++|+.....                  .+...+.+|++.|..+.|....+.|+++.+|++||+||+++
T Consensus       113 ~~lltgg~ekllrvfdln~p~------------------App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rT  174 (334)
T KOG0278|consen  113 NYLLTGGQEKLLRVFDLNRPK------------------APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRT  174 (334)
T ss_pred             hhhhccchHHHhhhhhccCCC------------------CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEecc
Confidence            778999999999999665432                  23455689999999999999999999999999999999999


Q ss_pred             CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEE
Q 005473          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (695)
Q Consensus       587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~Ir  666 (695)
                      ++.+.++.- ...|+++.++++|++|.++ ..+.|++||..+-+. ++.+.- .-.|.+..++|+.. ++++|++|..++
T Consensus       175 gt~v~sL~~-~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~-lKs~k~-P~nV~SASL~P~k~-~fVaGged~~~~  249 (334)
T KOG0278|consen  175 GTEVQSLEF-NSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGL-LKSYKM-PCNVESASLHPKKE-FFVAGGEDFKVY  249 (334)
T ss_pred             CcEEEEEec-CCCCcceeeccCCCEEEEe-cCceeEEeccccccc-eeeccC-ccccccccccCCCc-eEEecCcceEEE
Confidence            999999874 6789999999998877665 567899999998664 666553 35689999999984 788999999999


Q ss_pred             EEECCCCeEEEEE-ecCCCcEEEEEEeCCC
Q 005473          667 YWSINNGSCAGVF-KNFFESFVSVRVVQPR  695 (695)
Q Consensus       667 iWDl~tg~~v~~~-~~h~~~VtsVaf~sPd  695 (695)
                      .||+.+|+.+..+ ++|.++|.||+| +|+
T Consensus       250 kfDy~TgeEi~~~nkgh~gpVhcVrF-SPd  278 (334)
T KOG0278|consen  250 KFDYNTGEEIGSYNKGHFGPVHCVRF-SPD  278 (334)
T ss_pred             EEeccCCceeeecccCCCCceEEEEE-CCC
Confidence            9999999999997 899999999999 996

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.73  E-value=7e-17  Score=160.37  Aligned_cols=167  Identities=26%  Similarity=0.384  Sum_probs=142.5

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005473          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (695)
Q Consensus       505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl  584 (695)
                      ..-+++++++|-+|++|.+..+                   .+..++....+-|+.+.+.||++.||+|+.- .||+||+
T Consensus         9 ~~viLvsA~YDhTIRfWqa~tG-------------------~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~   68 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQALTG-------------------ICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDL   68 (311)
T ss_pred             CceEEEeccCcceeeeeehhcC-------------------eEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEc
Confidence            4468999999999999955433                   5777888888889999999999999999864 5999999


Q ss_pred             CCCe--EEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC
Q 005473          585 ESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (695)
Q Consensus       585 ~t~~--~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D  662 (695)
                      ++.+  ++.++++|+..|+.|.|..+|+.++|||+||++||||++... |-+.+ .|.+.|.+|..+|+...|| +|+.+
T Consensus        69 ~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~-~qR~~-~~~spVn~vvlhpnQteLi-s~dqs  145 (311)
T KOG0315|consen   69 NSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS-CQRNY-QHNSPVNTVVLHPNQTELI-SGDQS  145 (311)
T ss_pred             cCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc-cchhc-cCCCCcceEEecCCcceEE-eecCC
Confidence            8876  588999999999999999999999999999999999999843 33444 4789999999999988666 99999


Q ss_pred             CcEEEEECCCCeEEEEEe-cCCCcEEEEEEeCCC
Q 005473          663 SEIRYWSINNGSCAGVFK-NFFESFVSVRVVQPR  695 (695)
Q Consensus       663 g~IriWDl~tg~~v~~~~-~h~~~VtsVaf~sPd  695 (695)
                      |.|+|||+++..|...+. .....|.++.. +||
T Consensus       146 g~irvWDl~~~~c~~~liPe~~~~i~sl~v-~~d  178 (311)
T KOG0315|consen  146 GNIRVWDLGENSCTHELIPEDDTSIQSLTV-MPD  178 (311)
T ss_pred             CcEEEEEccCCccccccCCCCCcceeeEEE-cCC
Confidence            999999999988877665 34567888887 775

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.73  E-value=6.4e-17  Score=168.56  Aligned_cols=203  Identities=20%  Similarity=0.304  Sum_probs=156.7

Q ss_pred             ccccCCCCCceEEEEecCCCcccccc--CCc--------cCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCC
Q 005473          473 TLQHNGASSKSLLMFGSDGMGSLTSA--PNQ--------LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKG  542 (695)
Q Consensus       473 ~l~~s~s~~~s~l~~~~dg~~~la~s--~~~--------l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~  542 (695)
                      ...+.++.++....|...|...+...  .+.        .......+++++.|.++++|....+..              
T Consensus       116 ~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~--------------  181 (423)
T KOG0313|consen  116 KWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGEN--------------  181 (423)
T ss_pred             ceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchh--------------
Confidence            45566777888888887776221111  000        123334689999999999996654421              


Q ss_pred             ceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-------------------------CCeEEEEecccC
Q 005473          543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-------------------------SFTVKSTLEEHT  597 (695)
Q Consensus       543 ~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~-------------------------t~~~~~~l~~H~  597 (695)
                       ..+.+..-+||...|-||...++|..+++|+.|.+|+||+..                         ++.++.++.||+
T Consensus       182 -~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt  260 (423)
T KOG0313|consen  182 -KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHT  260 (423)
T ss_pred             -hhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccc
Confidence             112223334999999999999999999999999999999932                         234677889999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe---
Q 005473          598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---  674 (695)
Q Consensus       598 ~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~---  674 (695)
                      .+|.+|.|++ ...+++++.|.+|++||+.+++. +.++.+ ...+.|++.+|... +|++|+.|..||+||.|++.   
T Consensus       261 ~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~-~~~~~~-~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~gs~  336 (423)
T KOG0313|consen  261 EPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL-KSTLTT-NKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGDGSV  336 (423)
T ss_pred             cceeeEEEcC-CCceEeecccceEEEEEeecccc-eeeeec-CcceeEeecccccc-eeeecCCCCceeecCCCCCCCce
Confidence            9999999988 67899999999999999999875 555554 35689999999765 88899999999999999752   


Q ss_pred             EEEEEecCCCcEEEEEEeCCC
Q 005473          675 CAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       675 ~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ....|.+|.+.|.+|.| +|.
T Consensus       337 v~~s~~gH~nwVssvkw-sp~  356 (423)
T KOG0313|consen  337 VSQSLIGHKNWVSSVKW-SPT  356 (423)
T ss_pred             eEEeeecchhhhhheec-CCC
Confidence            45778899999999999 983

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.72  E-value=1.6e-16  Score=162.44  Aligned_cols=164  Identities=15%  Similarity=0.260  Sum_probs=134.1

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEEC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK--LLATGGHDKKAVLWCT  584 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~--~LaSgs~Dg~V~IWDl  584 (695)
                      .|+++||.|.+|++|+....                   ..+..+-.|.+.|+||.|.+.-.  .|++|+.||.|.||++
T Consensus        54 ~~~aSGssDetI~IYDm~k~-------------------~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~  114 (362)
T KOG0294|consen   54 PYVASGSSDETIHIYDMRKR-------------------KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV  114 (362)
T ss_pred             eeEeccCCCCcEEEEeccch-------------------hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEc
Confidence            89999999999999966443                   34566778999999999998765  8999999999999999


Q ss_pred             CCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecC-------------------------
Q 005473          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH-------------------------  639 (695)
Q Consensus       585 ~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh-------------------------  639 (695)
                      ...+++..+++|.+.|+.++.+|.+++.++.+.|+.+++||+-+++.....--.+                         
T Consensus       115 ~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~  194 (362)
T KOG0294|consen  115 GSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIY  194 (362)
T ss_pred             CCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEE
Confidence            9999999999999999999999999999999999999999997665311100000                         


Q ss_pred             -------------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473          640 -------------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       640 -------------~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf  691 (695)
                                   ...+.|+.|.. +. .+++|++|+.|++||.+.+.+...|.+|...|.+|.+
T Consensus       195 q~d~A~v~~~i~~~~r~l~~~~l~-~~-~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~  257 (362)
T KOG0294|consen  195 QLDNASVFREIENPKRILCATFLD-GS-ELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIAS  257 (362)
T ss_pred             ecccHhHhhhhhccccceeeeecC-Cc-eEEEecCCceEEEeccCCCccceeeecchhheeeeEE
Confidence                         11233444432 23 4568888999999999999999999999999999984

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=3.7e-17  Score=162.05  Aligned_cols=176  Identities=18%  Similarity=0.229  Sum_probs=144.6

Q ss_pred             CCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC--CCCEEEEEeCCCcEE
Q 005473          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAV  580 (695)
Q Consensus       503 ~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fsp--dg~~LaSgs~Dg~V~  580 (695)
                      .-....|++++.|++|++|......                ....+.+|++|.++|.-++|..  -|.+||++++||+|.
T Consensus        20 DyygkrlATcsSD~tVkIf~v~~n~----------------~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI   83 (299)
T KOG1332|consen   20 DYYGKRLATCSSDGTVKIFEVRNNG----------------QSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI   83 (299)
T ss_pred             hhhcceeeeecCCccEEEEEEcCCC----------------CceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence            3445789999999999999654332                1356788999999999999966  799999999999999


Q ss_pred             EEECCCCeE--EEEecccCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCC--eeEEEEecCCCCeEEEEEecC---
Q 005473          581 LWCTESFTV--KSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPS---  651 (695)
Q Consensus       581 IWDl~t~~~--~~~l~~H~~~V~~v~~spd--g~~LaTgs~DgtIrvWDl~t~~--~~l~~~~gh~~~V~sl~fspd---  651 (695)
                      ||.-.++.-  ......|...|++|+|.|.  |-.|++++.||.|.|.++++..  ...+...+|.-.|++++|.|-   
T Consensus        84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~  163 (299)
T KOG1332|consen   84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP  163 (299)
T ss_pred             EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence            999887743  3345679999999999995  6688999999999999998752  223566789999999999986   


Q ss_pred             C----------CeEEEEEeCCCcEEEEECCCCe--EEEEEecCCCcEEEEEEeCCC
Q 005473          652 K----------EDLLCSCDNNSEIRYWSINNGS--CAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       652 g----------~~llaSgs~Dg~IriWDl~tg~--~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      |          ..-|++|+.|..|+||+...++  ...++.+|++.|..|+| .|.
T Consensus       164 g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAw-aP~  218 (299)
T KOG1332|consen  164 GSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAW-APS  218 (299)
T ss_pred             ccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhh-ccc
Confidence            3          1247899999999999998864  34568899999999999 884

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.72  E-value=6.7e-17  Score=168.25  Aligned_cols=162  Identities=18%  Similarity=0.324  Sum_probs=130.2

Q ss_pred             CCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCe
Q 005473          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV  558 (695)
Q Consensus       479 s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V  558 (695)
                      .....-+.|+|...              ..+++|..-+.|++|....+.         |....       .-+.+|+..|
T Consensus       211 k~EGy~LdWSp~~~--------------g~LlsGDc~~~I~lw~~~~g~---------W~vd~-------~Pf~gH~~SV  260 (440)
T KOG0302|consen  211 KGEGYGLDWSPIKT--------------GRLLSGDCVKGIHLWEPSTGS---------WKVDQ-------RPFTGHTKSV  260 (440)
T ss_pred             Cccceeeecccccc--------------cccccCccccceEeeeeccCc---------eeecC-------ccccccccch
Confidence            35667777877444              235666677788888543321         21111       2245799999


Q ss_pred             EEEEEcCCC-CEEEEEeCCCcEEEEECCCC---eEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--ee
Q 005473          559 ESCHFSPDG-KLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YS  632 (695)
Q Consensus       559 ~~v~fspdg-~~LaSgs~Dg~V~IWDl~t~---~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~--~~  632 (695)
                      ..+.|||.. ..||||+.||+|+|||++.+   -++.+ +.|.+.|+.|.|+..-.+||+|++||+++|||+|.-+  .+
T Consensus       261 EDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~p  339 (440)
T KOG0302|consen  261 EDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQP  339 (440)
T ss_pred             hhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCc
Confidence            999999965 48999999999999999987   34433 8899999999999987799999999999999998643  46


Q ss_pred             EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 005473          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (695)
Q Consensus       633 l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~  671 (695)
                      +..|.-|..+|+||.|+|....+|++++.|..|.|||+.
T Consensus       340 VA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  340 VATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             ceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence            889999999999999999988899999999999999985

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.72  E-value=6e-17  Score=179.07  Aligned_cols=189  Identities=23%  Similarity=0.361  Sum_probs=151.3

Q ss_pred             cccCCCCCceEEEEecCCCcccccc-----C------CccCCCCc-EEEEeeCCCcEEEEeCCCCCCCCCccccccccCC
Q 005473          474 LQHNGASSKSLLMFGSDGMGSLTSA-----P------NQLTDMDR-FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGK  541 (695)
Q Consensus       474 l~~s~s~~~s~l~~~~dg~~~la~s-----~------~~l~~~~~-~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~  541 (695)
                      ...+++++.+...|.+.+..-+...     .      ..+...++ .+++|+.|.++.+|...                 
T Consensus        27 ~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~-----------------   89 (745)
T KOG0301|consen   27 CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLS-----------------   89 (745)
T ss_pred             EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecC-----------------
Confidence            4566777888888877554221110     0      11111222 25668888888877332                 


Q ss_pred             CceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeE
Q 005473          542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV  621 (695)
Q Consensus       542 ~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtI  621 (695)
                        ...++.++++|..-|.|++...++. |+||+.|.+++||-.  +++...+.+|...|+++.+-|++ .++|||.|++|
T Consensus        90 --~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtI  163 (745)
T KOG0301|consen   90 --QAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTI  163 (745)
T ss_pred             --CCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCccee
Confidence              2256788999999999999988888 999999999999986  56777799999999999999987 89999999999


Q ss_pred             EEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       622 rvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf  691 (695)
                      |+|.-.   .++++|.||.+.|+.+++-+++.  |++|+.||.|+.||+ +|+++..+.+|+.-|.+|..
T Consensus       164 klWk~~---~~l~tf~gHtD~VRgL~vl~~~~--flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~  227 (745)
T KOG0301|consen  164 KLWKGG---TLLKTFSGHTDCVRGLAVLDDSH--FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISM  227 (745)
T ss_pred             eeccCC---chhhhhccchhheeeeEEecCCC--eEeecCCceEEEEec-cCceeeeeeccceEEEEEEe
Confidence            999864   36899999999999999998865  459999999999999 79999999999999999984

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=1e-16  Score=176.92  Aligned_cols=166  Identities=22%  Similarity=0.360  Sum_probs=144.6

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA-STSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~-H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl  584 (695)
                      ..+|+.|..++.|.+|+....                   +.+..+.+ |...|-|++|+  +..+.+|+.|+.|.++|+
T Consensus       229 G~~LavG~~~g~v~iwD~~~~-------------------k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dv  287 (484)
T KOG0305|consen  229 GSHLAVGTSDGTVQIWDVKEQ-------------------KKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDV  287 (484)
T ss_pred             CCEEEEeecCCeEEEEehhhc-------------------cccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEE
Confidence            378999999999999965322                   34455566 99999999998  678999999999999999


Q ss_pred             CCCeEEEE-ecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEe--C
Q 005473          585 ESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--N  661 (695)
Q Consensus       585 ~t~~~~~~-l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs--~  661 (695)
                      +..+.... +.+|...|+.+.|++|+.+||+|+.|+.|.|||..... ++..+..|...|..++|||-...+||+|+  .
T Consensus       288 R~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~-p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~  366 (484)
T KOG0305|consen  288 RISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE-PKFTFTEHTAAVKALAWCPWQSGLLATGGGSA  366 (484)
T ss_pred             ecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc-ccEEEeccceeeeEeeeCCCccCceEEcCCCc
Confidence            98776555 88999999999999999999999999999999996644 58889999999999999999888999876  7


Q ss_pred             CCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          662 NSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       662 Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      |++|++||+.+|+++..+... .-|.+|.| +|.
T Consensus       367 D~~i~fwn~~~g~~i~~vdtg-sQVcsL~W-sk~  398 (484)
T KOG0305|consen  367 DRCIKFWNTNTGARIDSVDTG-SQVCSLIW-SKK  398 (484)
T ss_pred             ccEEEEEEcCCCcEecccccC-CceeeEEE-cCC
Confidence            999999999999999988644 67899999 763

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=3e-16  Score=167.25  Aligned_cols=189  Identities=17%  Similarity=0.267  Sum_probs=155.0

Q ss_pred             CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 005473          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (695)
Q Consensus       478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~  557 (695)
                      +-.+++++.|..|+               ..+.+||.|+.|.+|...+-.          +........+++.+..|+-+
T Consensus       122 HYQ~ITcL~fs~dg---------------s~iiTgskDg~V~vW~l~~lv----------~a~~~~~~~p~~~f~~Htls  176 (476)
T KOG0646|consen  122 HYQSITCLKFSDDG---------------SHIITGSKDGAVLVWLLTDLV----------SADNDHSVKPLHIFSDHTLS  176 (476)
T ss_pred             hccceeEEEEeCCC---------------cEEEecCCCccEEEEEEEeec----------ccccCCCccceeeeccCcce
Confidence            34455666655555               788999999999999764432          11122255778889999999


Q ss_pred             eEEEEEcCCC--CEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-----
Q 005473          558 VESCHFSPDG--KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-----  630 (695)
Q Consensus       558 V~~v~fspdg--~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~-----  630 (695)
                      |+++...+.|  .+|+|++.|.++++||+..+..+.++. ....+.+|+.+|.++.++.|+.+|.|.+.++....     
T Consensus       177 ITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~  255 (476)
T KOG0646|consen  177 ITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAG  255 (476)
T ss_pred             eEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccc
Confidence            9999998754  489999999999999999999888776 46789999999999999999999999999875322     


Q ss_pred             ----------eeEEEEecCCC--CeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          631 ----------YSLRTFTGHST--TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       631 ----------~~l~~~~gh~~--~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                                ..+..+.||.+  .|+|++++-||. +|++|+.||.|+|||+.+.+|++++..-.++|+-+.+ .|
T Consensus       256 v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i-~~  329 (476)
T KOG0646|consen  256 VNQKGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQI-NP  329 (476)
T ss_pred             ccccccccccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEe-ec
Confidence                      13567889988  999999999998 7779999999999999999999999877888888877 54

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.70  E-value=7.9e-17  Score=163.94  Aligned_cols=175  Identities=24%  Similarity=0.381  Sum_probs=140.7

Q ss_pred             cccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecC
Q 005473          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA  553 (695)
Q Consensus       474 l~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~  553 (695)
                      ..+.+.+++..+.|||..               .++++|+.|++|++|++.....           .     +.++.+ .
T Consensus       167 TlYDH~devn~l~FHPre---------------~ILiS~srD~tvKlFDfsK~sa-----------K-----rA~K~~-q  214 (430)
T KOG0640|consen  167 TLYDHVDEVNDLDFHPRE---------------TILISGSRDNTVKLFDFSKTSA-----------K-----RAFKVF-Q  214 (430)
T ss_pred             ehhhccCcccceeecchh---------------heEEeccCCCeEEEEecccHHH-----------H-----HHHHHh-h
Confidence            344566677777777654               7899999999999997743311           0     111111 2


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe---cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 005473          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL---EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (695)
Q Consensus       554 H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l---~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~  630 (695)
                      ...+|.|+.|+|.|.+|+.|..-.++++||+.+.+|...-   ..|++.|++|.+++.+++.+||+.||.|++||--+.+
T Consensus       215 d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r  294 (430)
T KOG0640|consen  215 DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR  294 (430)
T ss_pred             ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHH
Confidence            2456999999999999999999999999999998887654   4699999999999999999999999999999987755


Q ss_pred             eeEEEEe-cCC-CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecC
Q 005473          631 YSLRTFT-GHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF  682 (695)
Q Consensus       631 ~~l~~~~-gh~-~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h  682 (695)
                       |+.++. .|. +.|++..|..+|+++| +.+.|..|++|.+.+++++.++.|.
T Consensus       295 -Cv~t~~~AH~gsevcSa~Ftkn~kyiL-sSG~DS~vkLWEi~t~R~l~~YtGA  346 (430)
T KOG0640|consen  295 -CVRTIGNAHGGSEVCSAVFTKNGKYIL-SSGKDSTVKLWEISTGRMLKEYTGA  346 (430)
T ss_pred             -HHHHHHhhcCCceeeeEEEccCCeEEe-ecCCcceeeeeeecCCceEEEEecC
Confidence             576654 565 4699999999999655 8888999999999999999988854

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.70  E-value=3.5e-16  Score=173.12  Aligned_cols=187  Identities=22%  Similarity=0.323  Sum_probs=148.3

Q ss_pred             ccCCCCCceEEEEecCCCccccc------cCCccC-CCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeee
Q 005473          475 QHNGASSKSLLMFGSDGMGSLTS------APNQLT-DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTE  547 (695)
Q Consensus       475 ~~s~s~~~s~l~~~~dg~~~la~------s~~~l~-~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~  547 (695)
                      ...++.+..+..|..++..-+.+      ....+. ..+..+++||||.++++|...                     .+
T Consensus        74 l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~---------------------~l  132 (745)
T KOG0301|consen   74 LVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIG---------------------EL  132 (745)
T ss_pred             eEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecch---------------------hh
Confidence            44577788888888776511111      000111 222347999999999999332                     12


Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 005473          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (695)
Q Consensus       548 v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~  627 (695)
                      ...+.+|..+|.++++-|++ .++||+.|++|++|.-  ++++++|.+|++.|..+++-++ ..|++++.||.|++||+.
T Consensus       133 ~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~~  208 (745)
T KOG0301|consen  133 VYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDLD  208 (745)
T ss_pred             hcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecC-CCeEeecCCceEEEEecc
Confidence            33478999999999999998 7889999999999985  7889999999999999999886 467888999999999994


Q ss_pred             CCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       628 t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf  691 (695)
                       + .++..+.||...|++++...++. ++++|++|+++|||+..  +|+.++...+..|+++.+
T Consensus       209 -g-e~l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~  267 (745)
T KOG0301|consen  209 -G-EVLLEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKV  267 (745)
T ss_pred             -C-ceeeeeeccceEEEEEEecCCCC-eEEEecCCceEEEeecC--ceEEEEecCccceEEEEE
Confidence             3 46899999999999999655555 67799999999999986  899999888888888876

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=2.5e-15  Score=147.29  Aligned_cols=196  Identities=21%  Similarity=0.346  Sum_probs=152.4

Q ss_pred             CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCC---C------------CC-----------
Q 005473          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDAD---P------------RD-----------  531 (695)
Q Consensus       478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~---~------------~~-----------  531 (695)
                      +..++.+..|+++|               .++++|+.|.+|++..++.+..   +            ++           
T Consensus        88 hkgsiyc~~ws~~g---------------eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~  152 (350)
T KOG0641|consen   88 HKGSIYCTAWSPCG---------------ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGG  152 (350)
T ss_pred             cCccEEEEEecCcc---------------CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCc
Confidence            44578889999888               6889999999988875543310   0            00           


Q ss_pred             ----------ccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc--c---
Q 005473          532 ----------RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--H---  596 (695)
Q Consensus       532 ----------~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~--H---  596 (695)
                                ..+.+.+...+   ..+..+.+|++.|.++ ++-+|-.|++|+.|++|++||++-..++.++..  |   
T Consensus       153 ~il~s~gagdc~iy~tdc~~g---~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~g  228 (350)
T KOG0641|consen  153 AILASAGAGDCKIYITDCGRG---QGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGG  228 (350)
T ss_pred             eEEEecCCCcceEEEeecCCC---CcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCC
Confidence                      00111122222   3456778999988876 455688999999999999999998888887732  2   


Q ss_pred             --CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC--
Q 005473          597 --TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--  672 (695)
Q Consensus       597 --~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t--  672 (695)
                        .+.|.+|+..|.|++|++|-.|....+||++.++. +..|..|...|.||.|+|..- ++.+|+.|..|++-|+..  
T Consensus       229 lessavaav~vdpsgrll~sg~~dssc~lydirg~r~-iq~f~phsadir~vrfsp~a~-yllt~syd~~ikltdlqgdl  306 (350)
T KOG0641|consen  229 LESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM-IQRFHPHSADIRCVRFSPGAH-YLLTCSYDMKIKLTDLQGDL  306 (350)
T ss_pred             cccceeEEEEECCCcceeeeccCCCceEEEEeeCCce-eeeeCCCccceeEEEeCCCce-EEEEecccceEEEeecccch
Confidence              36799999999999999999999999999998764 899999999999999999855 666999999999999863  


Q ss_pred             --CeEEEEEecCCCcEEEEEEeCCC
Q 005473          673 --GSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       673 --g~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                        .-++.+...|.+.+..++| ||.
T Consensus       307 a~el~~~vv~ehkdk~i~~rw-h~~  330 (350)
T KOG0641|consen  307 AHELPIMVVAEHKDKAIQCRW-HPQ  330 (350)
T ss_pred             hhcCceEEEEeccCceEEEEe-cCc
Confidence              2345566689999999999 983

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.69  E-value=2.5e-16  Score=166.31  Aligned_cols=167  Identities=16%  Similarity=0.220  Sum_probs=147.3

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      .++.+|+.|.++.+++.+.+                   ..+.+++||...|+.+.|+++...+++++.|..|+||.+..
T Consensus       232 ~~ilTGG~d~~av~~d~~s~-------------------q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~  292 (506)
T KOG0289|consen  232 SKILTGGEDKTAVLFDKPSN-------------------QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL  292 (506)
T ss_pred             CcceecCCCCceEEEecchh-------------------hhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc
Confidence            77899999999999955433                   45678899999999999999999999999999999999988


Q ss_pred             CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe-cCCCCeEEEEEecCCCeEEEEEeCCCcE
Q 005473          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (695)
Q Consensus       587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~-gh~~~V~sl~fspdg~~llaSgs~Dg~I  665 (695)
                      ..+...+..|..+|+.+..+|.|.+|++++.|++..+.|++++........ ...-.+++.+|||||- +|++|..||.|
T Consensus       293 ~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~v  371 (506)
T KOG0289|consen  293 SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGVV  371 (506)
T ss_pred             ccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEeccCCCceE
Confidence            888888899999999999999999999999999999999999775222222 1223589999999986 89999999999


Q ss_pred             EEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          666 RYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       666 riWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      +|||+.++..+..|.+|+++|.+|+| +-
T Consensus       372 kiwdlks~~~~a~Fpght~~vk~i~F-sE  399 (506)
T KOG0289|consen  372 KIWDLKSQTNVAKFPGHTGPVKAISF-SE  399 (506)
T ss_pred             EEEEcCCccccccCCCCCCceeEEEe-cc
Confidence            99999999999999999999999999 63

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=4.6e-16  Score=171.82  Aligned_cols=168  Identities=22%  Similarity=0.353  Sum_probs=144.1

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      ..+.+|+.|+.|..++.....                  ..+.++.+|...|..+.|++|+++||+|+.|+.|.|||...
T Consensus       271 ~~lssGsr~~~I~~~dvR~~~------------------~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~  332 (484)
T KOG0305|consen  271 SVLSSGSRDGKILNHDVRISQ------------------HVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLS  332 (484)
T ss_pred             ceEEEecCCCcEEEEEEecch------------------hhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCC
Confidence            678899999999999664332                  01113789999999999999999999999999999999988


Q ss_pred             CeEEEEecccCCCeEEEEEcC-CCCEEEEEe--CCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEE-eCC
Q 005473          587 FTVKSTLEEHTQWITDVRFSP-SLSRLATSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC-DNN  662 (695)
Q Consensus       587 ~~~~~~l~~H~~~V~~v~~sp-dg~~LaTgs--~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSg-s~D  662 (695)
                      ..++..+.+|.+.|.+++|+| ...+||+|+  .|++|++||+.++.. +.... ..+-|++|.|++..+.++.+- ..+
T Consensus       333 ~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~-i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~  410 (484)
T KOG0305|consen  333 PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR-IDSVD-TGSQVCSLIWSKKYKELLSTHGYSE  410 (484)
T ss_pred             ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE-ecccc-cCCceeeEEEcCCCCEEEEecCCCC
Confidence            899999999999999999999 577999975  599999999998764 55544 346799999999987777554 467


Q ss_pred             CcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          663 SEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       663 g~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ..|.||++.+-+.+..+.+|...|..+++ +||
T Consensus       411 n~i~lw~~ps~~~~~~l~gH~~RVl~la~-SPd  442 (484)
T KOG0305|consen  411 NQITLWKYPSMKLVAELLGHTSRVLYLAL-SPD  442 (484)
T ss_pred             CcEEEEeccccceeeeecCCcceeEEEEE-CCC
Confidence            89999999999999999999999999999 997

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.69  E-value=3.4e-16  Score=174.22  Aligned_cols=148  Identities=24%  Similarity=0.432  Sum_probs=135.0

Q ss_pred             CCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005473          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (695)
Q Consensus       504 ~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWD  583 (695)
                      +..+|++.+=.|.+|++|...                   +++....+.||.-+|.|+.++||+++|+||+.|+.|+||-
T Consensus       518 pdgk~LaVsLLdnTVkVyflD-------------------tlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWG  578 (888)
T KOG0306|consen  518 PDGKLLAVSLLDNTVKVYFLD-------------------TLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWG  578 (888)
T ss_pred             CCCcEEEEEeccCeEEEEEec-------------------ceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEec
Confidence            344899999999999999552                   3356778999999999999999999999999999999999


Q ss_pred             CCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC
Q 005473          584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (695)
Q Consensus       584 l~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg  663 (695)
                      ++=|.|.+.+.+|.+.|.+|.|.|....++|+|.|+.|+-||-..-. ++..+.+|...|+|++..|+|. ++++++.|.
T Consensus       579 LdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe-~iq~L~~H~~ev~cLav~~~G~-~vvs~shD~  656 (888)
T KOG0306|consen  579 LDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE-EIQKLDGHHSEVWCLAVSPNGS-FVVSSSHDK  656 (888)
T ss_pred             cccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhh-hheeeccchheeeeeEEcCCCC-eEEeccCCc
Confidence            99999999999999999999999999999999999999999998765 4899999999999999999998 677999999


Q ss_pred             cEEEEECCC
Q 005473          664 EIRYWSINN  672 (695)
Q Consensus       664 ~IriWDl~t  672 (695)
                      +||+|....
T Consensus       657 sIRlwE~td  665 (888)
T KOG0306|consen  657 SIRLWERTD  665 (888)
T ss_pred             eeEeeeccC
Confidence            999999654

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.69  E-value=3.3e-17  Score=162.64  Aligned_cols=185  Identities=19%  Similarity=0.248  Sum_probs=156.0

Q ss_pred             ccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 005473          475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS  554 (695)
Q Consensus       475 ~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H  554 (695)
                      -+.+++++..+.|++            +.+..-|+++++.|+.--+-..                   .+-.-+.++.+|
T Consensus        10 c~ghtrpvvdl~~s~------------itp~g~flisa~kd~~pmlr~g-------------------~tgdwigtfegh   58 (334)
T KOG0278|consen   10 CHGHTRPVVDLAFSP------------ITPDGYFLISASKDGKPMLRNG-------------------DTGDWIGTFEGH   58 (334)
T ss_pred             EcCCCcceeEEeccC------------CCCCceEEEEeccCCCchhccC-------------------CCCCcEEeeecc
Confidence            345667888888876            3445589999998877555422                   222457889999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 005473          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (695)
Q Consensus       555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~  634 (695)
                      ++.|.++..+.+...-|+++.|-+.+|||.-++..+..+. |+..|.+++|+.|..+|+||+.++.+||||+...+.+..
T Consensus        59 kgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~  137 (334)
T KOG0278|consen   59 KGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPK  137 (334)
T ss_pred             CcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCch
Confidence            9999999999999999999999999999999999988886 899999999999999999999999999999999888889


Q ss_pred             EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       635 ~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      .+.+|.+.|..+.|+.....+| ++..|++||+||++++..+.++. ...+|+++.+ ++
T Consensus       138 E~~ghtg~Ir~v~wc~eD~~iL-SSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEv-s~  194 (334)
T KOG0278|consen  138 EISGHTGGIRTVLWCHEDKCIL-SSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEV-SQ  194 (334)
T ss_pred             hhcCCCCcceeEEEeccCceEE-eeccCCceEEEEeccCcEEEEEe-cCCCCcceee-cc
Confidence            9999999999999998877666 66889999999999999998886 2345566665 54

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.69  E-value=3.4e-16  Score=166.61  Aligned_cols=196  Identities=22%  Similarity=0.356  Sum_probs=155.5

Q ss_pred             CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCcccccc-ccCCCceeeeEEEecCCCC
Q 005473          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSA-EVGKGFTFTEFQLIPASTS  556 (695)
Q Consensus       478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~-d~~~~~~~~~v~~l~~H~~  556 (695)
                      +..++.++...+++               .++.+++.|++|.-|+...+...+....+-. ....+...++-.  ++|..
T Consensus       141 H~~s~~~vals~d~---------------~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r--~~h~k  203 (479)
T KOG0299|consen  141 HQLSVTSVALSPDD---------------KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR--KGHVK  203 (479)
T ss_pred             ccCcceEEEeeccc---------------cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc--ccccc
Confidence            44456666666555               7889999999999998866654332222210 000122222211  48999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 005473          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~  636 (695)
                      .|.|++.++||+||++|+.|..|.|||+++.+.+..+.+|.+.|.+++|......|++++.|++|++|+++.... +.++
T Consensus       204 eil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~-vetl  282 (479)
T KOG0299|consen  204 EILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY-VETL  282 (479)
T ss_pred             eeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH-HHHH
Confidence            999999999999999999999999999999999999999999999999998888999999999999999998665 7889


Q ss_pred             ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeC
Q 005473          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQ  693 (695)
Q Consensus       637 ~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~s  693 (695)
                      .||.+.|..|+....++ .++.|+.|+++++|++. .+.-..|.+|.+.+-|++|++
T Consensus       283 yGHqd~v~~IdaL~reR-~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In  337 (479)
T KOG0299|consen  283 YGHQDGVLGIDALSRER-CVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIN  337 (479)
T ss_pred             hCCccceeeechhcccc-eEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEec
Confidence            99999999999887765 77788899999999994 344455668888999999854

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.68  E-value=5.9e-16  Score=170.20  Aligned_cols=196  Identities=18%  Similarity=0.269  Sum_probs=153.5

Q ss_pred             cccCCCCCceEEEEecCCCccccccCCc-----------cCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCC
Q 005473          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQ-----------LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKG  542 (695)
Q Consensus       474 l~~s~s~~~s~l~~~~dg~~~la~s~~~-----------l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~  542 (695)
                      ..++.+.+.++..|++............           +.....++++|+.|+.|.+|+...+.....         ..
T Consensus        87 tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~---------~s  157 (735)
T KOG0308|consen   87 TLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLV---------AS  157 (735)
T ss_pred             ceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhh---------hh
Confidence            4455677888888877654211111100           133457889999999999998876643100         01


Q ss_pred             ceeeeEEEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeE
Q 005473          543 FTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV  621 (695)
Q Consensus       543 ~~~~~v~~l~-~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtI  621 (695)
                      +.......+. |+..+|++++.++.|..|++|+..+.+++||.++++.+..+.||+..|.++..++||+.++++|.||+|
T Consensus       158 ~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtI  237 (735)
T KOG0308|consen  158 FNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTI  237 (735)
T ss_pred             ccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceE
Confidence            1112222333 899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-CeEEEEEe
Q 005473          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFK  680 (695)
Q Consensus       622 rvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t-g~~v~~~~  680 (695)
                      ++||+... .|+.++..|+..|+++..+|+=. .+++|+.||.|+.=|+++ .+++..++
T Consensus       238 rlWdLgqQ-rCl~T~~vH~e~VWaL~~~~sf~-~vYsG~rd~~i~~Tdl~n~~~~tlick  295 (735)
T KOG0308|consen  238 RLWDLGQQ-RCLATYIVHKEGVWALQSSPSFT-HVYSGGRDGNIYRTDLRNPAKSTLICK  295 (735)
T ss_pred             Eeeecccc-ceeeeEEeccCceEEEeeCCCcc-eEEecCCCCcEEecccCCchhheEeec
Confidence            99999974 47999999999999999998765 566999999999999998 45555444

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.68  E-value=1.2e-15  Score=160.67  Aligned_cols=125  Identities=20%  Similarity=0.279  Sum_probs=102.7

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecC----CCC
Q 005473          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH----STT  642 (695)
Q Consensus       567 g~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh----~~~  642 (695)
                      ...+++|..|++|++||+++..++..+..+. .|+++..++++..|.+++.|.++.+.|+++... ..++...    ...
T Consensus       312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI-~~~~sA~g~k~asD  389 (459)
T KOG0288|consen  312 ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI-RQTFSAEGFKCASD  389 (459)
T ss_pred             ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccE-EEEeeccccccccc
Confidence            3456777778888888888888877777654 899999999999999999999999999998664 4444321    234


Q ss_pred             eEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCC--cEEEEEEeCCC
Q 005473          643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFE--SFVSVRVVQPR  695 (695)
Q Consensus       643 V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~--~VtsVaf~sPd  695 (695)
                      ++.+.|+|++. ++++|+.||.|+||++.++++...+...+.  .|++++| +|.
T Consensus       390 wtrvvfSpd~~-YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W-~~s  442 (459)
T KOG0288|consen  390 WTRVVFSPDGS-YVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSW-NPS  442 (459)
T ss_pred             cceeEECCCCc-eeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEE-cCC
Confidence            78999999988 777999999999999999999999985544  5999999 873

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.68  E-value=9e-16  Score=153.89  Aligned_cols=144  Identities=16%  Similarity=0.240  Sum_probs=126.2

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 005473          550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  629 (695)
Q Consensus       550 ~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~  629 (695)
                      .+.+|..+++-|.|+.+|.+|++|+.|.++.||-..+|+.+.++.||++.|+||+.+.+..+++||+.|.++++||+.++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999976


Q ss_pred             Cee----------------------------------------------------EEEEecCCCCeEEEEEecCCCeEEE
Q 005473          630 DYS----------------------------------------------------LRTFTGHSTTVMSLDFHPSKEDLLC  657 (695)
Q Consensus       630 ~~~----------------------------------------------------l~~~~gh~~~V~sl~fspdg~~lla  657 (695)
                      +..                                                    +..+..+.+.++++.|.|-+. .|+
T Consensus        85 k~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~-~ii  163 (327)
T KOG0643|consen   85 KQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE-TII  163 (327)
T ss_pred             cEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC-EEE
Confidence            531                                                    111224456788899999988 555


Q ss_pred             EEeCCCcEEEEECCCC-eEEEEEecCCCcEEEEEEeCCC
Q 005473          658 SCDNNSEIRYWSINNG-SCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       658 Sgs~Dg~IriWDl~tg-~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +|.+||.|.+||+++| +.+.....|...|+.|.| +|+
T Consensus       164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~-s~d  201 (327)
T KOG0643|consen  164 AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQF-SRD  201 (327)
T ss_pred             EecCCCcEEEEEcccCceeeechhhhccccccccc-cCC
Confidence            9999999999999998 556666789999999999 875

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.67  E-value=2.8e-16  Score=160.20  Aligned_cols=165  Identities=22%  Similarity=0.381  Sum_probs=145.6

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC--
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT--  584 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl--  584 (695)
                      ..+.++|.|.+.++|....+                   .++..+.||.+.|+||+|++.+.++++++.|++..||..  
T Consensus       161 pi~gtASADhTA~iWs~Esg-------------------~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av  221 (481)
T KOG0300|consen  161 PICGTASADHTARIWSLESG-------------------ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAV  221 (481)
T ss_pred             cceeecccccceeEEeeccc-------------------cceeeecccccceeeEEeccccceEEEccCCcchHHHHHhh
Confidence            57889999999999955433                   577889999999999999999999999999999999952  


Q ss_pred             ----CC----------------------------------CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 005473          585 ----ES----------------------------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (695)
Q Consensus       585 ----~t----------------------------------~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl  626 (695)
                          ..                                  ..++..+.+|.+.|.++.|-..|..++|++.|.+..+||+
T Consensus       222 ~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDV  301 (481)
T KOG0300|consen  222 NWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDV  301 (481)
T ss_pred             cCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeee
Confidence                00                                  1245678899999999999999999999999999999999


Q ss_pred             CCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-eEEEEEecCCCcEEEEEEeC
Q 005473          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKNFFESFVSVRVVQ  693 (695)
Q Consensus       627 ~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg-~~v~~~~~h~~~VtsVaf~s  693 (695)
                      +++.. +..+.||....+.++-||..+ |+++++.|.+.|+||++.. ..+.+|.||.+.|+++.| .
T Consensus       302 Etge~-v~~LtGHd~ELtHcstHptQr-LVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF-~  366 (481)
T KOG0300|consen  302 ETGEV-VNILTGHDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVF-N  366 (481)
T ss_pred             ccCce-eccccCcchhccccccCCcce-EEEEeccCceeEeccchhhcceeeeecccccceeEEEE-e
Confidence            99774 999999999999999999976 8889999999999999853 578899999999999998 5

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.67  E-value=1.4e-15  Score=158.01  Aligned_cols=146  Identities=21%  Similarity=0.294  Sum_probs=133.3

Q ss_pred             eEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 005473          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (695)
Q Consensus       547 ~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl  626 (695)
                      .+.++..|+++|.+|+.+|+.++++||+.|-...||++.++.....+.+|+..|+++.|+.+|.+||||+.+|.|+||+.
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~  135 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV  135 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence            45778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       627 ~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      .++.. ...+......+.=+.|||.+. +|++|+.||.|-+|.+.++.....+.||..++++=.| .|+
T Consensus       136 stg~~-~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f-~pd  201 (399)
T KOG0296|consen  136 STGGE-QWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEF-IPD  201 (399)
T ss_pred             ccCce-EEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccc-cCC
Confidence            99775 555555556788899999876 7779999999999999998889999999999999888 775

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.65  E-value=3.4e-15  Score=152.74  Aligned_cols=173  Identities=21%  Similarity=0.306  Sum_probs=139.7

Q ss_pred             EEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 005473          509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT  588 (695)
Q Consensus       509 lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~  588 (695)
                      ++.|++...|.-|.......+       ......+++.++..+..|.++|+||+.+  +.++|+|+.|-+|+|||++...
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~-------~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~   74 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKG-------CTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRK   74 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccc-------cccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchh
Confidence            466777777777755332211       1122335667778889999999999995  8999999999999999999998


Q ss_pred             EEEEecccCCCeEEEEEcCCCC--EEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEE
Q 005473          589 VKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (695)
Q Consensus       589 ~~~~l~~H~~~V~~v~~spdg~--~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~Ir  666 (695)
                      .+..+-.|.+.|+++.|.+...  .|++|+.||.|.+||+... .++.++.+|.+.|+.+++||.++ |..+.+.|+.++
T Consensus        75 qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr  152 (362)
T KOG0294|consen   75 QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLR  152 (362)
T ss_pred             hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-EEeeeecccccccceeEecCCCc-eEEEEcCCceee
Confidence            8889999999999999998654  8999999999999999986 57999999999999999999998 666888899999


Q ss_pred             EEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          667 YWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       667 iWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      .||+-+|+.-.+..--..+ +.|.| .|
T Consensus       153 ~WNLV~Gr~a~v~~L~~~a-t~v~w-~~  178 (362)
T KOG0294|consen  153 TWNLVRGRVAFVLNLKNKA-TLVSW-SP  178 (362)
T ss_pred             eehhhcCccceeeccCCcc-eeeEE-cC
Confidence            9999888766665522211 44777 66

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.64  E-value=4.1e-15  Score=159.91  Aligned_cols=186  Identities=20%  Similarity=0.274  Sum_probs=137.5

Q ss_pred             CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEe-cCCCC
Q 005473          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PASTS  556 (695)
Q Consensus       478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l-~~H~~  556 (695)
                      |+..++.+.+.+.|               .-+++||.|-+|++|++..-.. .              ++.++.| .....
T Consensus       166 gtk~Vsal~~Dp~G---------------aR~~sGs~Dy~v~~wDf~gMda-s--------------~~~fr~l~P~E~h  215 (641)
T KOG0772|consen  166 GTKIVSALAVDPSG---------------ARFVSGSLDYTVKFWDFQGMDA-S--------------MRSFRQLQPCETH  215 (641)
T ss_pred             CceEEEEeeecCCC---------------ceeeeccccceEEEEecccccc-c--------------chhhhccCccccc
Confidence            44555555555555               4579999999999998754321 1              1111222 12334


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe------------cccCCCeEEEEEcCC-CCEEEEEeCCCeEEE
Q 005473          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL------------EEHTQWITDVRFSPS-LSRLATSSADRTVRV  623 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l------------~~H~~~V~~v~~spd-g~~LaTgs~DgtIrv  623 (695)
                      .|.++.|++.|..|++.+..-.++|+|-...+.+...            +||...++|.+|+|. ...|+|++.||++|+
T Consensus       216 ~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRi  295 (641)
T KOG0772|consen  216 QINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRI  295 (641)
T ss_pred             ccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEE
Confidence            5899999999999888888889999997765554433            479999999999996 557899999999999


Q ss_pred             EECCCCCeeEEEEe-----cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC--eEEEE-EecCCC--cEEEEEEeC
Q 005473          624 WDTENPDYSLRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGV-FKNFFE--SFVSVRVVQ  693 (695)
Q Consensus       624 WDl~t~~~~l~~~~-----gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg--~~v~~-~~~h~~--~VtsVaf~s  693 (695)
                      ||+...+..+.++.     +..-.|++++|++||+ +||+|..||.|.+||.+..  .+... -++|..  .|+||+| +
T Consensus       296 Wdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~F-S  373 (641)
T KOG0772|consen  296 WDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISF-S  373 (641)
T ss_pred             EecCCchhheeEEeeccCCCcccCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEe-c
Confidence            99988765444443     3334689999999999 5888999999999998643  23333 338877  9999999 8


Q ss_pred             CC
Q 005473          694 PR  695 (695)
Q Consensus       694 Pd  695 (695)
                      ++
T Consensus       374 ~d  375 (641)
T KOG0772|consen  374 YD  375 (641)
T ss_pred             cc
Confidence            75

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.64  E-value=1.1e-15  Score=160.70  Aligned_cols=149  Identities=22%  Similarity=0.374  Sum_probs=121.7

Q ss_pred             eeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCe
Q 005473          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT  620 (695)
Q Consensus       544 ~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t---~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~Dgt  620 (695)
                      +......+..|++.|.-|.||++|+|||+|+.|.++.||++..   .+.++++.+|..+|..|.|+||.++|++++.|..
T Consensus       213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~  292 (519)
T KOG0293|consen  213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV  292 (519)
T ss_pred             CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh
Confidence            3455677889999999999999999999999999999998743   3557899999999999999999999999999999


Q ss_pred             EEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCC-CcEEEEEEeCCC
Q 005473          621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFF-ESFVSVRVVQPR  695 (695)
Q Consensus       621 IrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~-~~VtsVaf~sPd  695 (695)
                      +++||+.++......-.+|...+.+++|+|||.. +++|+.|+.|..||++ |..+...++-. ..|.+|+. ++|
T Consensus       293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlai-t~D  365 (519)
T KOG0293|consen  293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAI-TYD  365 (519)
T ss_pred             eeeccCCcchhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCC-cchhhcccccccceeEEEEE-cCC
Confidence            9999999987522233345688999999999986 5599999999999987 44455555432 45666665 543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.63  E-value=1.2e-14  Score=152.27  Aligned_cols=138  Identities=20%  Similarity=0.258  Sum_probs=114.0

Q ss_pred             cccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecC
Q 005473          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA  553 (695)
Q Consensus       474 l~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~  553 (695)
                      +...+..++-.+.|.|...              ..+|+||.|.+|.+|..+++...++            ...++..|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD--------------~vIASgSeD~~v~vW~IPe~~l~~~------------ltepvv~L~g  129 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFND--------------CVIASGSEDTKVMVWQIPENGLTRD------------LTEPVVELYG  129 (472)
T ss_pred             CccCccccccccccCccCC--------------ceeecCCCCceEEEEECCCcccccC------------cccceEEEee
Confidence            3344556677777777664              7899999999999998877643221            1256888999


Q ss_pred             CCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 005473          554 STSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (695)
Q Consensus       554 H~~~V~~v~fspdg-~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~  632 (695)
                      |...|-.|.|+|.. +.|++++.|.+|.|||+.+++.+.++. |.+.|++++|+.+|.+|+|++.|+.|||||.++++. 
T Consensus       130 H~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~-  207 (472)
T KOG0303|consen  130 HQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTV-  207 (472)
T ss_pred             cceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcE-
Confidence            99999999999964 589999999999999999999998888 999999999999999999999999999999998764 


Q ss_pred             EEEEecC
Q 005473          633 LRTFTGH  639 (695)
Q Consensus       633 l~~~~gh  639 (695)
                      +..-.+|
T Consensus       208 v~e~~~h  214 (472)
T KOG0303|consen  208 VSEGVAH  214 (472)
T ss_pred             eeecccc
Confidence            4433344

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.62  E-value=1.7e-15  Score=151.58  Aligned_cols=145  Identities=19%  Similarity=0.435  Sum_probs=125.6

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE--ecccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEE
Q 005473          549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD  625 (695)
Q Consensus       549 ~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~--l~~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWD  625 (695)
                      ..+.+|...|.+|+|+.+|+.|++|+.|+++.||+++.......  ..+|++.|-.++|+| ...+|++++.|++|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            44678999999999999999999999999999999987755443  478999999999988 467899999999999999


Q ss_pred             CCCCCee-------------------------------------------------------------------------
Q 005473          626 TENPDYS-------------------------------------------------------------------------  632 (695)
Q Consensus       626 l~t~~~~-------------------------------------------------------------------------  632 (695)
                      ++.++.+                                                                         
T Consensus        94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~I  173 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEI  173 (313)
T ss_pred             eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEE
Confidence            9854321                                                                         


Q ss_pred             --------EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          633 --------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       633 --------l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                              +..+..|...+.||.|+|+|+ +||+|+.|..|.+||+..--|++.|.-+.-+|..|.| +.|
T Consensus       174 LsypsLkpv~si~AH~snCicI~f~p~Gr-yfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSF-S~d  242 (313)
T KOG1407|consen  174 LSYPSLKPVQSIKAHPSNCICIEFDPDGR-YFATGSADALVSLWDVDELICERCISRLDWPVRTLSF-SHD  242 (313)
T ss_pred             EeccccccccccccCCcceEEEEECCCCc-eEeeccccceeeccChhHhhhheeeccccCceEEEEe-ccC
Confidence                    233558888899999999998 7889999999999999999999999999999999999 643

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.62  E-value=3.2e-15  Score=156.57  Aligned_cols=134  Identities=22%  Similarity=0.390  Sum_probs=117.9

Q ss_pred             EEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-------CeEEEEecccCCCeEEEEEcCC-CCEEEEEeCC
Q 005473          548 FQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPS-LSRLATSSAD  618 (695)
Q Consensus       548 v~~l~~H~~~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~t-------~~~~~~l~~H~~~V~~v~~spd-g~~LaTgs~D  618 (695)
                      +-.+.||+++|..++|+| +...||||++|.+|.||.+..       .+++..+.+|...|-.|.|+|. .+.|++++.|
T Consensus        74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D  153 (472)
T KOG0303|consen   74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD  153 (472)
T ss_pred             CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence            345679999999999999 566899999999999999864       2567889999999999999995 5688999999


Q ss_pred             CeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCC
Q 005473          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFE  684 (695)
Q Consensus       619 gtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~  684 (695)
                      .+|.+||+.++.. +.++. |.+.|+++.|+.||. ++|+.+.|..|||||.++++.+..-.+|.+
T Consensus       154 n~v~iWnv~tgea-li~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG  216 (472)
T KOG0303|consen  154 NTVSIWNVGTGEA-LITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEG  216 (472)
T ss_pred             ceEEEEeccCCce-eeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccC
Confidence            9999999999876 55555 999999999999998 788999999999999999999988887764

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=1.4e-14  Score=164.83  Aligned_cols=165  Identities=18%  Similarity=0.320  Sum_probs=133.4

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005473          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (695)
Q Consensus       505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl  584 (695)
                      ...+++.||.|-.|++....+.                   .....+++|+++|.+|.|+|.+++||+.+.||.|+|||+
T Consensus       107 ~g~~iaagsdD~~vK~~~~~D~-------------------s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~  167 (933)
T KOG1274|consen  107 SGKMIAAGSDDTAVKLLNLDDS-------------------SQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL  167 (933)
T ss_pred             CCcEEEeecCceeEEEEecccc-------------------chheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence            3478999999999999855433                   355778999999999999999999999999999999999


Q ss_pred             CCCeEEEEeccc--------CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe--cCCCCeEEEEEecCCCe
Q 005473          585 ESFTVKSTLEEH--------TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT--GHSTTVMSLDFHPSKED  654 (695)
Q Consensus       585 ~t~~~~~~l~~H--------~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~--gh~~~V~sl~fspdg~~  654 (695)
                      .++.+..++.+-        ...+..++|+|++..|+..+.|++|++|+...... ...+.  .|...++++.|+|+|. 
T Consensus       168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~-~f~Lr~~~~ss~~~~~~wsPnG~-  245 (933)
T KOG1274|consen  168 QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL-QFKLRDKLSSSKFSDLQWSPNGK-  245 (933)
T ss_pred             ccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee-heeecccccccceEEEEEcCCCc-
Confidence            998887766431        35567899999988888888999999999998664 33333  2334489999999998 


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          655 LLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       655 llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +||+++.||.|.|||+.+-..    ......|++++| +|+
T Consensus       246 YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw-~p~  281 (933)
T KOG1274|consen  246 YIAASTLDGQILVWNVDTHER----HEFKRAVCCEAW-KPN  281 (933)
T ss_pred             EEeeeccCCcEEEEecccchh----ccccceeEEEec-CCC
Confidence            677999999999999997211    234577888888 874

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.61  E-value=4.7e-15  Score=150.05  Aligned_cols=149  Identities=23%  Similarity=0.398  Sum_probs=123.2

Q ss_pred             ceeeeEEEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-EEEe-----cccCCCeEEEEEcC--CCCEEE
Q 005473          543 FTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTL-----EEHTQWITDVRFSP--SLSRLA  613 (695)
Q Consensus       543 ~~~~~v~~l~-~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~-~~~l-----~~H~~~V~~v~~sp--dg~~La  613 (695)
                      .++.++..+. .+-+.|.||.|.|++..|++-. |..|.+|++..+.. +..+     .+|....++-+|+|  ++..++
T Consensus       110 ~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~  188 (370)
T KOG1007|consen  110 STLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA  188 (370)
T ss_pred             chhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE
Confidence            3445555555 5667899999999999998876 88899999987654 3332     23566788889999  677887


Q ss_pred             EEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-CeEEEEEecCCCcEEEEEEe
Q 005473          614 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKNFFESFVSVRVV  692 (695)
Q Consensus       614 Tgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t-g~~v~~~~~h~~~VtsVaf~  692 (695)
                      +.+ |++++.||+|+.+.....-..|...|..++|+|+..++|++|+.||.|||||.|. ..++.++.+|+.+|++|+| 
T Consensus       189 tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRf-  266 (370)
T KOG1007|consen  189 TTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRF-  266 (370)
T ss_pred             EeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEe-
Confidence            765 8999999999877645556688889999999999999999999999999999986 5689999999999999999 


Q ss_pred             CC
Q 005473          693 QP  694 (695)
Q Consensus       693 sP  694 (695)
                      +|
T Consensus       267 n~  268 (370)
T KOG1007|consen  267 NP  268 (370)
T ss_pred             cC
Confidence            88

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.61  E-value=7.2e-15  Score=159.92  Aligned_cols=181  Identities=17%  Similarity=0.253  Sum_probs=146.3

Q ss_pred             cCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 005473          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL  581 (695)
Q Consensus       502 l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~I  581 (695)
                      +...+.-+++++.|+++++|+..+.           .......+.++.++++|.++|.|+++.+++..+++|+.||+|+.
T Consensus       302 ~~~sep~lit~sed~~lk~WnLqk~-----------~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~  370 (577)
T KOG0642|consen  302 FHPSEPVLITASEDGTLKLWNLQKA-----------KKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRC  370 (577)
T ss_pred             cCCCCCeEEEeccccchhhhhhccc-----------CCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeee
Confidence            4555688999999999999977332           13345677899999999999999999999999999999999999


Q ss_pred             EECCC----------CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE------------------
Q 005473          582 WCTES----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL------------------  633 (695)
Q Consensus       582 WDl~t----------~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l------------------  633 (695)
                      |++..          .....++.||++.|+.+++++...+|++++.||+||+|+......|+                  
T Consensus       371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss  450 (577)
T KOG0642|consen  371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSS  450 (577)
T ss_pred             eccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccc
Confidence            96531          13345788999999999999998899999999999999875432210                  


Q ss_pred             -------------------------EEEec-------CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec
Q 005473          634 -------------------------RTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKN  681 (695)
Q Consensus       634 -------------------------~~~~g-------h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~  681 (695)
                                               ..+..       -...+..+.++|..+ +.+++..|+.|+++|..+++.+....+
T Consensus       451 ~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~~~~~l~s~~a  529 (577)
T KOG0642|consen  451 RPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAHEDRSIRFFDNKTGKILHSMVA  529 (577)
T ss_pred             hhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC-eeEecccCCceecccccccccchheee
Confidence                                     00000       012355678899886 677999999999999999999999999


Q ss_pred             CCCcEEEEEEeCCC
Q 005473          682 FFESFVSVRVVQPR  695 (695)
Q Consensus       682 h~~~VtsVaf~sPd  695 (695)
                      |...|+++++ .|+
T Consensus       530 ~~~svtslai-~~n  542 (577)
T KOG0642|consen  530 HKDSVTSLAI-DPN  542 (577)
T ss_pred             ccceecceee-cCC
Confidence            9999999999 774

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=1.2e-14  Score=148.71  Aligned_cols=182  Identities=16%  Similarity=0.268  Sum_probs=132.8

Q ss_pred             ccccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCcc-------------------
Q 005473          473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRV-------------------  533 (695)
Q Consensus       473 ~l~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~-------------------  533 (695)
                      +....++..++++.|+.+|               ..+++++.|++|++|...+-..-.-+.                   
T Consensus        80 ~~LKgH~~~vt~~~FsSdG---------------K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc  144 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDG---------------KKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDC  144 (420)
T ss_pred             hhhhccCCceeeeEEcCCC---------------ceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCc
Confidence            3455677888899999888               678999999999999776532100000                   


Q ss_pred             -ccccccCCCceee-----------------eEE---EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 005473          534 -GRSAEVGKGFTFT-----------------EFQ---LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST  592 (695)
Q Consensus       534 -~~~~d~~~~~~~~-----------------~v~---~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~  592 (695)
                       .-+.....+..+.                 ++.   .-+-|.-.|..+-....+++|++++.|.+|+|||++ |+.+..
T Consensus       145 ~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~  223 (420)
T KOG2096|consen  145 KSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQS  223 (420)
T ss_pred             ceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeee
Confidence             0000001111111                 111   112344455666666788999999999999999998 888888


Q ss_pred             ecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC---CCC----eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcE
Q 005473          593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NPD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (695)
Q Consensus       593 l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~---t~~----~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~I  665 (695)
                      +......-+..+.+|+|++|+++++.--|+||.+-   .+.    ..+..+.||.+.|..++|+++... +++.+.||++
T Consensus       224 idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r-~vtvSkDG~w  302 (420)
T KOG2096|consen  224 IDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTR-AVTVSKDGKW  302 (420)
T ss_pred             eccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcce-eEEEecCCcE
Confidence            87777778899999999999999999999999873   222    135678899999999999999874 5599999999


Q ss_pred             EEEECC
Q 005473          666 RYWSIN  671 (695)
Q Consensus       666 riWDl~  671 (695)
                      ||||++
T Consensus       303 riwdtd  308 (420)
T KOG2096|consen  303 RIWDTD  308 (420)
T ss_pred             EEeecc
Confidence            999974

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.61  E-value=1.4e-14  Score=153.93  Aligned_cols=148  Identities=18%  Similarity=0.297  Sum_probs=126.2

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 005473          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWC  583 (695)
Q Consensus       505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fsp-dg~~LaSgs~Dg~V~IWD  583 (695)
                      ..+.|++||.|.+|++|+...+                   ++..++..|.+.|.++.|+| ...+|++|+.|++|++.|
T Consensus       255 ~~nVLaSgsaD~TV~lWD~~~g-------------------~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D  315 (463)
T KOG0270|consen  255 FRNVLASGSADKTVKLWDVDTG-------------------KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKD  315 (463)
T ss_pred             cceeEEecCCCceEEEEEcCCC-------------------CcceehhhcCCceeEEEecCCCceEEEeccccceEEeee
Confidence            3488999999999999977544                   45667788999999999998 467999999999999999


Q ss_pred             CCCCeEE-EEecccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeC
Q 005473          584 TESFTVK-STLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (695)
Q Consensus       584 l~t~~~~-~~l~~H~~~V~~v~~spd-g~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~  661 (695)
                      ++..... ..+. -.+.|..+.|.|. ...++++..||+|+-+|+|....++.++..|.+.|.+|+++..-+.++++++.
T Consensus       316 ~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~  394 (463)
T KOG0270|consen  316 CRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAST  394 (463)
T ss_pred             ccCccccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccc
Confidence            9843222 2222 3568999999985 45678888999999999999988999999999999999999998999999999


Q ss_pred             CCcEEEEECCC
Q 005473          662 NSEIRYWSINN  672 (695)
Q Consensus       662 Dg~IriWDl~t  672 (695)
                      |+.|++|++..
T Consensus       395 d~~Vklw~~~~  405 (463)
T KOG0270|consen  395 DKVVKLWKFDV  405 (463)
T ss_pred             cceEEEEeecC
Confidence            99999999864

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=6.1e-15  Score=146.42  Aligned_cols=171  Identities=21%  Similarity=0.352  Sum_probs=135.3

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEE
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKKAVLWC  583 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspd--g~~LaSgs~Dg~V~IWD  583 (695)
                      ..+|+++++|+.|-+|....                 -.+........|...|++|+|.|.  |-.|++|+.||+|.|.+
T Consensus        70 G~iLAScsYDgkVIiWke~~-----------------g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~  132 (299)
T KOG1332|consen   70 GTILASCSYDGKVIIWKEEN-----------------GRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLT  132 (299)
T ss_pred             CcEeeEeecCceEEEEecCC-----------------CchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEE
Confidence            48999999999999994432                 244556667789999999999985  45899999999999998


Q ss_pred             CCCC---eEEEEecccCCCeEEEEEcCC---C-----------CEEEEEeCCCeEEEEECCCCCee-EEEEecCCCCeEE
Q 005473          584 TESF---TVKSTLEEHTQWITDVRFSPS---L-----------SRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMS  645 (695)
Q Consensus       584 l~t~---~~~~~l~~H~~~V~~v~~spd---g-----------~~LaTgs~DgtIrvWDl~t~~~~-l~~~~gh~~~V~s  645 (695)
                      +++.   ...+....|.-.|++++|.|.   |           ..|++|+.|..|+||+..++... ..++.+|.+.|+.
T Consensus       133 ~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRD  212 (299)
T KOG1332|consen  133 YDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRD  212 (299)
T ss_pred             EcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhh
Confidence            8754   233456789999999999985   4           56999999999999999886542 3569999999999


Q ss_pred             EEEecCC---CeEEEEEeCCCcEEEEECCCC--e-EEEEEecCCCcEEEEEEeCC
Q 005473          646 LDFHPSK---EDLLCSCDNNSEIRYWSINNG--S-CAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       646 l~fspdg---~~llaSgs~Dg~IriWDl~tg--~-~v~~~~~h~~~VtsVaf~sP  694 (695)
                      ++|+|.-   ...+++|+.||+|.||-.+..  . ....++...+.|..+.| ++
T Consensus       213 VAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSW-S~  266 (299)
T KOG1332|consen  213 VAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSW-SL  266 (299)
T ss_pred             hhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEE-ec
Confidence            9999963   457899999999999988732  1 12233345677888888 65

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.60  E-value=3.2e-14  Score=145.42  Aligned_cols=141  Identities=19%  Similarity=0.301  Sum_probs=111.7

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005473          549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (695)
Q Consensus       549 ~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t  628 (695)
                      ..+-.|..+|.||.+++....+++|+.|++|++||.+...++.++.. ...|+|+...  +..|+.|+.|..|.+||+++
T Consensus        88 ~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn  164 (323)
T KOG1036|consen   88 DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRN  164 (323)
T ss_pred             eeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CCEEEEeecCceEEEEEccc
Confidence            44567999999999999888999999999999999987555555543 3478888775  66888888889999999875


Q ss_pred             CCee-----------------------------------------------EEEEecCCC---------CeEEEEEecCC
Q 005473          629 PDYS-----------------------------------------------LRTFTGHST---------TVMSLDFHPSK  652 (695)
Q Consensus       629 ~~~~-----------------------------------------------l~~~~gh~~---------~V~sl~fspdg  652 (695)
                      ....                                               ...|++|..         +|.+++|||-.
T Consensus       165 ~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~  244 (323)
T KOG1036|consen  165 LDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH  244 (323)
T ss_pred             ccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc
Confidence            3210                                               122445532         48899999986


Q ss_pred             CeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          653 EDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       653 ~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      . .|+||+.||.|.+||+.+.+.+..|......|.+++| +-
T Consensus       245 ~-tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsf-s~  284 (323)
T KOG1036|consen  245 G-TFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSF-SM  284 (323)
T ss_pred             c-eEEecCCCceEEEccCcchhhhhhccCCCCceEEEEe-cc
Confidence            5 6789999999999999999999988877788889988 53

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.60  E-value=1.4e-14  Score=147.02  Aligned_cols=160  Identities=26%  Similarity=0.357  Sum_probs=126.8

Q ss_pred             CCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeE
Q 005473          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE  559 (695)
Q Consensus       480 ~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~  559 (695)
                      -.++.+.|-|..+              .++.++|+|.++++|+...-                   .+...++ -.+.|+
T Consensus       102 y~iss~~WyP~Dt--------------GmFtssSFDhtlKVWDtnTl-------------------Q~a~~F~-me~~VY  147 (397)
T KOG4283|consen  102 YAISSAIWYPIDT--------------GMFTSSSFDHTLKVWDTNTL-------------------QEAVDFK-MEGKVY  147 (397)
T ss_pred             eeeeeeEEeeecC--------------ceeecccccceEEEeecccc-------------------eeeEEee-cCceee
Confidence            3566677777554              57889999999999966432                   1222221 234588


Q ss_pred             EEEEcC---CCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCE-EEEEeCCCeEEEEECCCCCeeEEE
Q 005473          560 SCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRT  635 (695)
Q Consensus       560 ~v~fsp---dg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~-LaTgs~DgtIrvWDl~t~~~~l~~  635 (695)
                      +-+|+|   .-.+||+|..|-.|+++|+..|.+.+++.||.+.|.+|.|+|...+ |+||+.||.||+||++...-|+.+
T Consensus       148 shamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~  227 (397)
T KOG4283|consen  148 SHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRV  227 (397)
T ss_pred             hhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEE
Confidence            888888   3458889999999999999999999999999999999999997665 699999999999999876445554


Q ss_pred             Ee--------------cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe
Q 005473          636 FT--------------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS  674 (695)
Q Consensus       636 ~~--------------gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~  674 (695)
                      +.              .|.+.|..++|..++.+ +++++.|..+++|+..+|+
T Consensus       228 lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~-l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  228 LDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY-LASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             eecccCccCccccccccccceeeeeeecccchh-hhhccCccceEEeecccCc
Confidence            43              56678999999999985 5588889999999998764

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.59  E-value=1.8e-14  Score=147.83  Aligned_cols=190  Identities=17%  Similarity=0.257  Sum_probs=146.5

Q ss_pred             CCCCcEEEEeeCCCcEEEEeCCCCCC------------------------------CCCccccccccCCCceeeeEEEec
Q 005473          503 TDMDRFVDDGSLDDNVESFLSPDDAD------------------------------PRDRVGRSAEVGKGFTFTEFQLIP  552 (695)
Q Consensus       503 ~~~~~~lasgS~D~~V~lw~~~~~~~------------------------------~~~~~~~~~d~~~~~~~~~v~~l~  552 (695)
                      .+...++++.+.|.-|++|++.++..                              +..+..++.+....-..-++....
T Consensus       120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~  199 (406)
T KOG2919|consen  120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTV  199 (406)
T ss_pred             CCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhh
Confidence            44557888899999999998876531                              111122333332111111111111


Q ss_pred             -----CCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEE
Q 005473          553 -----ASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWD  625 (695)
Q Consensus       553 -----~H~~~V~~v~fspd-g~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~-DgtIrvWD  625 (695)
                           +-.+-|.|++|+|- .+.++.|+....+-||.-....++..+.+|.+.|+.++|.++|+.|++|+. |-.|.+||
T Consensus       200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WD  279 (406)
T KOG2919|consen  200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWD  279 (406)
T ss_pred             hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEe
Confidence                 23667899999995 459999999999999999999999999999999999999999999999975 77899999


Q ss_pred             CCCCCeeEEEEecCCC-CeEEE--EEecCCCeEEEEEeCCCcEEEEECCC-CeEEEEEecCCCcEEEEEEeCC
Q 005473          626 TENPDYSLRTFTGHST-TVMSL--DFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       626 l~t~~~~l~~~~gh~~-~V~sl--~fspdg~~llaSgs~Dg~IriWDl~t-g~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      +|..+.++..+..|.+ .--.|  +..|++. +|++|+.||.|++||+++ |..+.++..|++.|..|++ ||
T Consensus       280 iR~~~~pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsl-nP  350 (406)
T KOG2919|consen  280 IRYSRDPVYALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSL-NP  350 (406)
T ss_pred             ehhccchhhhhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCCCCCcccccccccccccceec-Cc
Confidence            9988877888888876 22334  4467777 788999999999999998 8889999999999999999 98

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.58  E-value=2.3e-14  Score=152.78  Aligned_cols=162  Identities=19%  Similarity=0.277  Sum_probs=138.1

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      +|+++|+.|..|.+|+..+.                   .++.++++|.+.|.+++|-.....|++++.|.+|+||+++.
T Consensus       215 kylatgg~d~~v~Iw~~~t~-------------------ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~  275 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTL-------------------EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ  275 (479)
T ss_pred             cEEEecCCCceEEEecCccc-------------------chhhcccccccceeeeeeecCccceeeeecCCceEEEehhH
Confidence            89999999999999955332                   46677899999999999988888899999999999999999


Q ss_pred             CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEE
Q 005473          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (695)
Q Consensus       587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~Ir  666 (695)
                      ...+.++.+|.+.|..|....-.+.+-+|+.|+++++|++...  .--.|.+|.+.+-|++|-.+.  -|++|+.||.|.
T Consensus       276 ~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee--sqlifrg~~~sidcv~~In~~--HfvsGSdnG~Ia  351 (479)
T KOG0299|consen  276 LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE--SQLIFRGGEGSIDCVAFINDE--HFVSGSDNGSIA  351 (479)
T ss_pred             hHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc--ceeeeeCCCCCeeeEEEeccc--ceeeccCCceEE
Confidence            9999999999999999988776667777779999999999543  346788999999999998764  356999999999


Q ss_pred             EEECCCCeEEEEEe-cCC---C--------cEEEEEE
Q 005473          667 YWSINNGSCAGVFK-NFF---E--------SFVSVRV  691 (695)
Q Consensus       667 iWDl~tg~~v~~~~-~h~---~--------~VtsVaf  691 (695)
                      +|++-+.+++.+.. +|.   .        +|++|+.
T Consensus       352 LWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~  388 (479)
T KOG0299|consen  352 LWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAV  388 (479)
T ss_pred             EeeecccCceeEeeccccccCCccccccccceeeeEe
Confidence            99999999998877 342   2        6777775

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.58  E-value=1.8e-14  Score=146.83  Aligned_cols=134  Identities=17%  Similarity=0.365  Sum_probs=111.0

Q ss_pred             CCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeEE-EEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 005473          554 STSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (695)
Q Consensus       554 H~~~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~t-~~~~-~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~  630 (695)
                      -.+.|.+|+||| ...+|+.++.|++||+|++.. +..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.++.
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q  105 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ  105 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence            456799999999 556777999999999999976 3332 3456799999999999999999999999999999999874


Q ss_pred             eeEEEEecCCCCeEEEEEecCCC-eEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEE
Q 005473          631 YSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVR  690 (695)
Q Consensus       631 ~~l~~~~gh~~~V~sl~fspdg~-~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVa  690 (695)
                        +..+..|.+.|.++.|-+... .+|++|+.|.+|++||.|...++.++.-. +.|.++.
T Consensus       106 --~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eRvYa~D  163 (347)
T KOG0647|consen  106 --VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ERVYAAD  163 (347)
T ss_pred             --eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-ceeeehh
Confidence              577888999999999976543 37789999999999999998888877644 3444443

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=1.2e-13  Score=157.25  Aligned_cols=200  Identities=20%  Similarity=0.304  Sum_probs=148.8

Q ss_pred             CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCC-CCCCCcc--c----cccccCC----C--ce
Q 005473          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDD-ADPRDRV--G----RSAEVGK----G--FT  544 (695)
Q Consensus       478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~-~~~~~~~--~----~~~d~~~----~--~~  544 (695)
                      +..-.+.+.|.++|               .|+++++.|+.|+.|....+ .+++...  +    .+.....    +  ..
T Consensus        12 ht~G~t~i~~d~~g---------------efi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~   76 (933)
T KOG1274|consen   12 HTGGLTLICYDPDG---------------EFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQN   76 (933)
T ss_pred             ccCceEEEEEcCCC---------------CEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccc
Confidence            33446677777766               68999999999999977665 3332221  1    0000000    0  00


Q ss_pred             eeeE---------EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEE
Q 005473          545 FTEF---------QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS  615 (695)
Q Consensus       545 ~~~v---------~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTg  615 (695)
                      .-.+         ..+...+-++.+|+|+-+|+++|.|+.|-.|++-++.+...++++++|.++|.++.|+|.+.+||+.
T Consensus        77 tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvs  156 (933)
T KOG1274|consen   77 TVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVS  156 (933)
T ss_pred             eEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEE
Confidence            0011         1222335578999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEECCCCCeeEEEEecC--------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe--cCCCc
Q 005473          616 SADRTVRVWDTENPDYSLRTFTGH--------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--NFFES  685 (695)
Q Consensus       616 s~DgtIrvWDl~t~~~~l~~~~gh--------~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~--~h~~~  685 (695)
                      +.||.|+|||+.++.. ..++.+-        ...++.++|+|+|..+++.+ .|+.|++|+....+....+.  .|...
T Consensus       157 s~dG~v~iw~~~~~~~-~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~-~d~~Vkvy~r~~we~~f~Lr~~~~ss~  234 (933)
T KOG1274|consen  157 SCDGKVQIWDLQDGIL-SKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP-VDNTVKVYSRKGWELQFKLRDKLSSSK  234 (933)
T ss_pred             ecCceEEEEEcccchh-hhhcccCCccccccccceeeeeeecCCCCeEEeec-cCCeEEEEccCCceeheeecccccccc
Confidence            9999999999997653 4443321        34567889999987666554 58999999999999888877  34556


Q ss_pred             EEEEEEeCCC
Q 005473          686 FVSVRVVQPR  695 (695)
Q Consensus       686 VtsVaf~sPd  695 (695)
                      +..+.| +|.
T Consensus       235 ~~~~~w-sPn  243 (933)
T KOG1274|consen  235 FSDLQW-SPN  243 (933)
T ss_pred             eEEEEE-cCC
Confidence            999999 985

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=1.1e-14  Score=169.25  Aligned_cols=171  Identities=22%  Similarity=0.383  Sum_probs=141.5

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTE  585 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspd-g~~LaSgs~Dg~V~IWDl~  585 (695)
                      +++|+|+.||.|.+|+...-..+             +...    -....+.|.|++|+.. ...|++++.+|++.|||++
T Consensus       130 nlLASGa~~geI~iWDlnn~~tP-------------~~~~----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr  192 (1049)
T KOG0307|consen  130 NLLASGADDGEILIWDLNKPETP-------------FTPG----SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLR  192 (1049)
T ss_pred             ceeeccCCCCcEEEeccCCcCCC-------------CCCC----CCCCcccceEeccchhhhHHhhccCCCCCceecccc
Confidence            69999999999999977543211             0000    1123456999999874 4578999999999999999


Q ss_pred             CCeEEEEecccCC--CeEEEEEcCCC-CEEEEEeCCC---eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEE
Q 005473          586 SFTVKSTLEEHTQ--WITDVRFSPSL-SRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC  659 (695)
Q Consensus       586 t~~~~~~l~~H~~--~V~~v~~spdg-~~LaTgs~Dg---tIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSg  659 (695)
                      ..+.+..+..|.+  .+..+.|+|+. ..|++++.|.   .|.+||+|....+++++.+|...|.+|+|++.+..++++|
T Consensus       193 ~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSs  272 (1049)
T KOG0307|consen  193 KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSS  272 (1049)
T ss_pred             CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcc
Confidence            9888877766654  47789999974 4666666544   5999999998888999999999999999999998899999


Q ss_pred             eCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          660 DNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       660 s~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +.|+.|.+|+..+++.+..+....+++..|.| .|+
T Consensus       273 gkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w-~pr  307 (1049)
T KOG0307|consen  273 GKDNRIICWNPNTGEVLGELPAQGNWCFDVQW-CPR  307 (1049)
T ss_pred             cCCCCeeEecCCCceEeeecCCCCcceeeeee-cCC
Confidence            99999999999999999999998999999999 885

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.57  E-value=4.6e-14  Score=142.98  Aligned_cols=181  Identities=19%  Similarity=0.335  Sum_probs=141.7

Q ss_pred             CceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEE
Q 005473          481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES  560 (695)
Q Consensus       481 ~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~  560 (695)
                      .+.++.|.|++.               -+++- .|..|.+|.......   +...+....          -.+|....++
T Consensus       125 ~i~cvew~Pns~---------------klasm-~dn~i~l~~l~ess~---~vaev~ss~----------s~e~~~~fts  175 (370)
T KOG1007|consen  125 KINCVEWEPNSD---------------KLASM-DDNNIVLWSLDESSK---IVAEVLSSE----------SAEMRHSFTS  175 (370)
T ss_pred             ceeeEEEcCCCC---------------eeEEe-ccCceEEEEcccCcc---hheeecccc----------cccccceecc
Confidence            678999999664               23333 388899996644321   111111111          1125666888


Q ss_pred             EEEcC--CCCEEEEEeCCCcEEEEECCCCeEEEEe-cccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeEEEE
Q 005473          561 CHFSP--DGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTF  636 (695)
Q Consensus       561 v~fsp--dg~~LaSgs~Dg~V~IWDl~t~~~~~~l-~~H~~~V~~v~~spdg~-~LaTgs~DgtIrvWDl~t~~~~l~~~  636 (695)
                      -+|+|  +|+.+++.+ |+++..||+++.++...+ .+|...|.++.|+|+.. +|+|+++||.|||||+|..+.++..+
T Consensus       176 g~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el  254 (370)
T KOG1007|consen  176 GAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL  254 (370)
T ss_pred             cccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc
Confidence            99998  788887766 899999999998877666 57889999999999754 68999999999999999999999999


Q ss_pred             ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-----------------------------eEEEEEecCCCcEE
Q 005473          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-----------------------------SCAGVFKNFFESFV  687 (695)
Q Consensus       637 ~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg-----------------------------~~v~~~~~h~~~Vt  687 (695)
                      .+|..+|++|.|+|....|+.+|+.|..|.+|....-                             ..+.++..|.+.|.
T Consensus       255 ~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY  334 (370)
T KOG1007|consen  255 PGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVY  334 (370)
T ss_pred             CCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceE
Confidence            9999999999999998889999999999999975311                             12457888999999


Q ss_pred             EEEE
Q 005473          688 SVRV  691 (695)
Q Consensus       688 sVaf  691 (695)
                      +++|
T Consensus       335 ~~aW  338 (370)
T KOG1007|consen  335 ALAW  338 (370)
T ss_pred             EEee
Confidence            9999

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.56  E-value=5.4e-15  Score=155.64  Aligned_cols=178  Identities=20%  Similarity=0.306  Sum_probs=145.6

Q ss_pred             CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 005473          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (695)
Q Consensus       478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~  557 (695)
                      +...+..+.|.++.               ..+++|+.|..|++|.....                 ....+.++.+..+.
T Consensus       174 h~gev~~v~~l~~s---------------dtlatgg~Dr~Ik~W~v~~~-----------------k~~~~~tLaGs~g~  221 (459)
T KOG0288|consen  174 HEGEVHDVEFLRNS---------------DTLATGGSDRIIKLWNVLGE-----------------KSELISTLAGSLGN  221 (459)
T ss_pred             cccccceeEEccCc---------------chhhhcchhhhhhhhhcccc-----------------hhhhhhhhhccCCC
Confidence            44455666666543               45799999999999966433                 12456677888899


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 005473          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~  637 (695)
                      |+.+.|.++++.++++++|+.+++|++.......++.+|++.|+++.|.-....+++|+.|.+|++||+.. .+|.+++.
T Consensus       222 it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k-~~C~kt~l  300 (459)
T KOG0288|consen  222 ITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK-AYCSKTVL  300 (459)
T ss_pred             cceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhh-hheecccc
Confidence            99999999999999999999999999999999999999999999999988766699999999999999997 44566554


Q ss_pred             cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       638 gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      . .+.+..|+..   ...+++|-.|+.||+||+++..++.+...|. .|++|.. ++
T Consensus       301 ~-~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~l-s~  351 (459)
T KOG0288|consen  301 P-GSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDL-SM  351 (459)
T ss_pred             c-cccccceEec---ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEee-cc
Confidence            2 3455666655   2356799999999999999999999998885 8999887 55

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.56  E-value=2e-14  Score=149.32  Aligned_cols=216  Identities=14%  Similarity=0.219  Sum_probs=154.7

Q ss_pred             ccccCCCCCceEEEEecCCCccccccC------CccCCCCcEEEEeeCCCcEEEEeCCCCC-------------C-----
Q 005473          473 TLQHNGASSKSLLMFGSDGMGSLTSAP------NQLTDMDRFVDDGSLDDNVESFLSPDDA-------------D-----  528 (695)
Q Consensus       473 ~l~~s~s~~~s~l~~~~dg~~~la~s~------~~l~~~~~~lasgS~D~~V~lw~~~~~~-------------~-----  528 (695)
                      ...++|+.+..++.|+...-.++....      ..+.-....+.+++.|.+|+.|......             +     
T Consensus        80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~  159 (433)
T KOG0268|consen   80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKN  159 (433)
T ss_pred             hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccCCcceeeecccccccccccccc
Confidence            345667888888888876532211110      0111112556778899999999643210             0     


Q ss_pred             ----CCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEE
Q 005473          529 ----PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV  603 (695)
Q Consensus       529 ----~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~-~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v  603 (695)
                          .......+|+...   ..++..+.-..+.|.||.|+|... .|++|+.|+.|.|||++...++..+.- +..-+.|
T Consensus       160 ~~FaTcGe~i~IWD~~R---~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~I  235 (433)
T KOG0268|consen  160 SVFATCGEQIDIWDEQR---DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTI  235 (433)
T ss_pred             ccccccCceeeeccccc---CCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccce
Confidence                0011123444333   356666777778899999999655 678888999999999999998876642 4456789


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe-cC
Q 005473          604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-NF  682 (695)
Q Consensus       604 ~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~-~h  682 (695)
                      +|+|++-.+++|+.|..++.||++.-..++..+.+|.+.|++|+|+|.|..+ ++|+.|.+||||.++.+..-..+. .-
T Consensus       236 swnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Ef-vsgsyDksIRIf~~~~~~SRdiYhtkR  314 (433)
T KOG0268|consen  236 CWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEF-VSGSYDKSIRIFPVNHGHSRDIYHTKR  314 (433)
T ss_pred             ecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchh-ccccccceEEEeecCCCcchhhhhHhh
Confidence            9999877889999999999999999888899999999999999999999964 599999999999998765433331 11


Q ss_pred             CCcEEEEEEeCC
Q 005473          683 FESFVSVRVVQP  694 (695)
Q Consensus       683 ~~~VtsVaf~sP  694 (695)
                      -..|.+|.| +-
T Consensus       315 Mq~V~~Vk~-S~  325 (433)
T KOG0268|consen  315 MQHVFCVKY-SM  325 (433)
T ss_pred             hheeeEEEE-ec
Confidence            245677877 53

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=5.3e-13  Score=136.48  Aligned_cols=188  Identities=19%  Similarity=0.301  Sum_probs=141.4

Q ss_pred             CCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 005473          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (695)
Q Consensus       477 s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~  556 (695)
                      .+.+-+.++.|...|               +-+++||.|.+|++|++.++               ..++.+....+.|.+
T Consensus        11 ~h~DlihdVs~D~~G---------------RRmAtCSsDq~vkI~d~~~~---------------s~~W~~Ts~Wrah~~   60 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYG---------------RRMATCSSDQTVKIWDSTSD---------------SGTWSCTSSWRAHDG   60 (361)
T ss_pred             CCcceeeeeeecccC---------------ceeeeccCCCcEEEEeccCC---------------CCceEEeeeEEecCC
Confidence            334445666666655               77899999999999986433               235667778899999


Q ss_pred             CeEEEEEcC--CCCEEEEEeCCCcEEEEECC---------CCeEEEEecccCCCeEEEEEcCC--CCEEEEEeCCCeEEE
Q 005473          557 KVESCHFSP--DGKLLATGGHDKKAVLWCTE---------SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRV  623 (695)
Q Consensus       557 ~V~~v~fsp--dg~~LaSgs~Dg~V~IWDl~---------t~~~~~~l~~H~~~V~~v~~spd--g~~LaTgs~DgtIrv  623 (695)
                      .|..|.|.+  -|..+|+++.|++|.||.-.         ......++....+.|++|.|.|.  |-.||+++.||+|||
T Consensus        61 Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRI  140 (361)
T KOG2445|consen   61 SIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRI  140 (361)
T ss_pred             cEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEE
Confidence            999999965  48899999999999999641         12344566677899999999994  778999999999999


Q ss_pred             EECCCCCee-----EEEE-------ecCCCCeEEEEEecC--CCeEEEEEeCC-----CcEEEEECCCC--e--EEEEEe
Q 005473          624 WDTENPDYS-----LRTF-------TGHSTTVMSLDFHPS--KEDLLCSCDNN-----SEIRYWSINNG--S--CAGVFK  680 (695)
Q Consensus       624 WDl~t~~~~-----l~~~-------~gh~~~V~sl~fspd--g~~llaSgs~D-----g~IriWDl~tg--~--~v~~~~  680 (695)
                      |+.-.....     ...+       ..+.....||.|+|.  .+.+|+.|+.+     +.+.||....+  +  .+.++.
T Consensus       141 YEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~  220 (361)
T KOG2445|consen  141 YEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP  220 (361)
T ss_pred             EecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC
Confidence            998764321     1111       245667899999975  23467677644     48899987653  2  456677


Q ss_pred             cCCCcEEEEEEeCCC
Q 005473          681 NFFESFVSVRVVQPR  695 (695)
Q Consensus       681 ~h~~~VtsVaf~sPd  695 (695)
                      +|+++|+.|+| .|+
T Consensus       221 d~~dpI~di~w-APn  234 (361)
T KOG2445|consen  221 DHTDPIRDISW-APN  234 (361)
T ss_pred             CCCCcceeeee-ccc
Confidence            99999999999 985

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=1.4e-13  Score=147.14  Aligned_cols=165  Identities=20%  Similarity=0.334  Sum_probs=137.2

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~  585 (695)
                      ..|++.|+..+++.+|....+                   ..+..+.+|-..|+|+.|+.||.+|+||+.||.|.+|++-
T Consensus        93 G~~l~ag~i~g~lYlWelssG-------------------~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~  153 (476)
T KOG0646|consen   93 GYFLLAGTISGNLYLWELSSG-------------------ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT  153 (476)
T ss_pred             ceEEEeecccCcEEEEEeccc-------------------cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence            378888889999999966544                   2345567899999999999999999999999999999762


Q ss_pred             ---------CCeEEEEecccCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCe
Q 005473          586 ---------SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED  654 (695)
Q Consensus       586 ---------t~~~~~~l~~H~~~V~~v~~spd--g~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~  654 (695)
                               +.++++.|..|+-+|+++...+.  ..+|+|+|.|.++|+||+..+.. +.++. ....+.+++.+|-+. 
T Consensus       154 ~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L-Llti~-fp~si~av~lDpae~-  230 (476)
T KOG0646|consen  154 DLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL-LLTIT-FPSSIKAVALDPAER-  230 (476)
T ss_pred             eecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee-eEEEe-cCCcceeEEEccccc-
Confidence                     45678899999999999998764  46899999999999999998765 44444 356799999999977 


Q ss_pred             EEEEEeCCCcEEEEECCC----------------CeEEEEEecCCC--cEEEEEEeC
Q 005473          655 LLCSCDNNSEIRYWSINN----------------GSCAGVFKNFFE--SFVSVRVVQ  693 (695)
Q Consensus       655 llaSgs~Dg~IriWDl~t----------------g~~v~~~~~h~~--~VtsVaf~s  693 (695)
                      .++.|+.+|.|.+.++.+                +..+..+.||.+  .|+|+++ +
T Consensus       231 ~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLai-s  286 (476)
T KOG0646|consen  231 VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAI-S  286 (476)
T ss_pred             EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEE-e
Confidence            566999999999998753                235678889998  9999987 5

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=5e-14  Score=144.15  Aligned_cols=131  Identities=21%  Similarity=0.376  Sum_probs=109.2

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 005473          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~  637 (695)
                      ..||.|++-|.+||+|+.||.|.|||+.|...-+.+.+|..+|++++|+++|++|+|+|.|..|++||+..+. ++..+.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs-~l~rir  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS-PLKRIR  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-ceeEEE
Confidence            6899999999999999999999999999999989999999999999999999999999999999999998876 333322


Q ss_pred             cCCCCeEE-----------------------------------------------EEEecCCCeEEEEEeCCCcEEEEEC
Q 005473          638 GHSTTVMS-----------------------------------------------LDFHPSKEDLLCSCDNNSEIRYWSI  670 (695)
Q Consensus       638 gh~~~V~s-----------------------------------------------l~fspdg~~llaSgs~Dg~IriWDl  670 (695)
                       ..+.|+.                                               ..|++.|+ ++++|...|.+.|+|.
T Consensus       105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~-yIitGtsKGkllv~~a  182 (405)
T KOG1273|consen  105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK-YIITGTSKGKLLVYDA  182 (405)
T ss_pred             -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCC-EEEEecCcceEEEEec
Confidence             1122222                                               23555666 5569999999999999


Q ss_pred             CCCeEEEEEecCC-CcEEEEEE
Q 005473          671 NNGSCAGVFKNFF-ESFVSVRV  691 (695)
Q Consensus       671 ~tg~~v~~~~~h~-~~VtsVaf  691 (695)
                      .+-+|+..++-.+ ..|..|.|
T Consensus       183 ~t~e~vas~rits~~~IK~I~~  204 (405)
T KOG1273|consen  183 ETLECVASFRITSVQAIKQIIV  204 (405)
T ss_pred             chheeeeeeeechheeeeEEEE
Confidence            9999999998665 66776665

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.55  E-value=8.3e-14  Score=157.06  Aligned_cols=172  Identities=22%  Similarity=0.309  Sum_probs=145.4

Q ss_pred             CCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005473          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (695)
Q Consensus       503 ~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IW  582 (695)
                      ....+|+..|...|+|.+|+...+..                ...+..-..|.++|+.++...-++.+++++.||.+++|
T Consensus       457 s~CGNF~~IG~S~G~Id~fNmQSGi~----------------r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw  520 (910)
T KOG1539|consen  457 SFCGNFVFIGYSKGTIDRFNMQSGIH----------------RKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFW  520 (910)
T ss_pred             eccCceEEEeccCCeEEEEEcccCee----------------ecccccCccccCceeEEEecCCCceEEEccCcceEEEE
Confidence            44558888888999999997765521                01111225799999999999999999999999999999


Q ss_pred             ECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC
Q 005473          583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (695)
Q Consensus       583 Dl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D  662 (695)
                      |..+...+..+.- ...+.++.++.....++.+.+|-.|+|+|+.+.+. ++.|.||...|++++|+|||++++ +++.|
T Consensus       521 ~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv-vR~f~gh~nritd~~FS~DgrWli-sasmD  597 (910)
T KOG1539|consen  521 DFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV-VREFWGHGNRITDMTFSPDGRWLI-SASMD  597 (910)
T ss_pred             ecCCcceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhh-hHHhhccccceeeeEeCCCCcEEE-EeecC
Confidence            9998887777753 56788999998888999999999999999998665 899999999999999999999655 88889


Q ss_pred             CcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          663 SEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       663 g~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ++||+||+.++.++-.+. -..++++|.| +|+
T Consensus       598 ~tIr~wDlpt~~lID~~~-vd~~~~sls~-SPn  628 (910)
T KOG1539|consen  598 STIRTWDLPTGTLIDGLL-VDSPCTSLSF-SPN  628 (910)
T ss_pred             CcEEEEeccCcceeeeEe-cCCcceeeEE-CCC
Confidence            999999999999999885 4567899999 985

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.55  E-value=5.9e-14  Score=150.48  Aligned_cols=123  Identities=22%  Similarity=0.442  Sum_probs=105.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE--EEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 005473          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (695)
Q Consensus       555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~--~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~  632 (695)
                      ...|.+|...|||+.|++|++-.+|.|||+..-.+.  ..+..-.-.+++++.+||.++.++++.||.|.|||+++.. .
T Consensus       465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-~  543 (705)
T KOG0639|consen  465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-L  543 (705)
T ss_pred             ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-e
Confidence            456999999999999999999999999999765443  2333333567889999999999999999999999999855 5


Q ss_pred             EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEE
Q 005473          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF  679 (695)
Q Consensus       633 l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~  679 (695)
                      ++.|.||.+.+.||++++||..|+ +|+-|.+||.||+++++.+..+
T Consensus       544 VrqfqGhtDGascIdis~dGtklW-TGGlDntvRcWDlregrqlqqh  589 (705)
T KOG0639|consen  544 VRQFQGHTDGASCIDISKDGTKLW-TGGLDNTVRCWDLREGRQLQQH  589 (705)
T ss_pred             eecccCCCCCceeEEecCCCceee-cCCCccceeehhhhhhhhhhhh
Confidence            999999999999999999999776 9999999999999998765443

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.54  E-value=5.4e-14  Score=149.86  Aligned_cols=196  Identities=14%  Similarity=0.132  Sum_probs=156.3

Q ss_pred             ccccccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEE
Q 005473          471 RPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL  550 (695)
Q Consensus       471 ~~~l~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~  550 (695)
                      ..++.......++++.|||...             ..+|++|..-|.|-+|++....               ....-+..
T Consensus       178 ~~~v~kv~~~Rit~l~fHPt~~-------------~~lva~GdK~G~VG~Wn~~~~~---------------~d~d~v~~  229 (498)
T KOG4328|consen  178 ILNVAKVTDRRITSLAFHPTEN-------------RKLVAVGDKGGQVGLWNFGTQE---------------KDKDGVYL  229 (498)
T ss_pred             ecceeEecccceEEEEecccCc-------------ceEEEEccCCCcEEEEecCCCC---------------CccCceEE
Confidence            3355556677899999999553             2789999999999999874211               11234566


Q ss_pred             ecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEe--cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 005473          551 IPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (695)
Q Consensus       551 l~~H~~~V~~v~fspdg-~~LaSgs~Dg~V~IWDl~t~~~~~~l--~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~  627 (695)
                      +..|..+|.++.|+|.. ..|++.+.||+|++-|+++......+  ......+..+.|+.+...++++..=|.+.+||++
T Consensus       230 f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R  309 (498)
T KOG4328|consen  230 FTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLR  309 (498)
T ss_pred             eccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEee
Confidence            78899999999999954 47999999999999999876543333  3345667788898888888888777799999999


Q ss_pred             CCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC--e--EEEEEecCCCcEEEEEEeCCC
Q 005473          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--S--CAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       628 t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg--~--~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +++..+..+.-|+..|++|+++|..++++++|+.|++++|||+|.-  +  ++.....|+..|.+..| +|+
T Consensus       310 ~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyF-SPs  380 (498)
T KOG4328|consen  310 TDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYF-SPS  380 (498)
T ss_pred             cCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEE-cCC
Confidence            9876677778899999999999999999999999999999999852  2  33444489999999999 995

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.53  E-value=9.6e-14  Score=146.21  Aligned_cols=155  Identities=23%  Similarity=0.389  Sum_probs=131.1

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-  585 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~-  585 (695)
                      .++++|+.|..|++|....+..+.          ..........+..|...|++|.|+|+|.+||||+++|.|.+|-.. 
T Consensus        27 ~~laT~G~D~~iriW~v~r~~~~~----------~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~   96 (434)
T KOG1009|consen   27 NKLATAGGDKDIRIWKVNRSEPGG----------GDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGD   96 (434)
T ss_pred             cceecccCccceeeeeeeecCCCC----------CceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecC
Confidence            489999999999999776543221          113556778889999999999999999999999999999999544 


Q ss_pred             -------C--------CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEec
Q 005473          586 -------S--------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP  650 (695)
Q Consensus       586 -------t--------~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fsp  650 (695)
                             +        ....+++.+|...|++++|+|++.++++++.|.++++||+..+.. +..+.+|...|..++|.|
T Consensus        97 ~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l-~~~~~dh~~yvqgvawDp  175 (434)
T KOG1009|consen   97 VRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL-LAILDDHEHYVQGVAWDP  175 (434)
T ss_pred             cCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee-Eeeccccccccceeecch
Confidence                   3        334567789999999999999999999999999999999999775 899999999999999999


Q ss_pred             CCCeEEEEEeCCCcEEEEECCCC
Q 005473          651 SKEDLLCSCDNNSEIRYWSINNG  673 (695)
Q Consensus       651 dg~~llaSgs~Dg~IriWDl~tg  673 (695)
                      ... ++++-+.|...+++++...
T Consensus       176 l~q-yv~s~s~dr~~~~~~~~~~  197 (434)
T KOG1009|consen  176 LNQ-YVASKSSDRHPEGFSAKLK  197 (434)
T ss_pred             hhh-hhhhhccCcccceeeeeee
Confidence            987 5667777887888887643

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.53  E-value=2.8e-13  Score=145.21  Aligned_cols=168  Identities=20%  Similarity=0.293  Sum_probs=131.5

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEE
Q 005473          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWC  583 (695)
Q Consensus       505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~-~LaSgs~Dg~V~IWD  583 (695)
                      .+.++|+++..|.|-+.....+.             +.   +++.  .+....|.-+.|++..+ +|.+++++|.|.+||
T Consensus       132 ~DeyiAsvs~gGdiiih~~~t~~-------------~t---t~f~--~~sgqsvRll~ys~skr~lL~~asd~G~VtlwD  193 (673)
T KOG4378|consen  132 TDEYIASVSDGGDIIIHGTKTKQ-------------KT---TTFT--IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWD  193 (673)
T ss_pred             CcceeEEeccCCcEEEEecccCc-------------cc---ccee--cCCCCeEEEeecccccceeeEeeccCCeEEEEe
Confidence            34788888888877776443221             11   1111  12234577899999776 677889999999999


Q ss_pred             CCCCeEEEEe-cccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeC
Q 005473          584 TESFTVKSTL-EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (695)
Q Consensus       584 l~t~~~~~~l-~~H~~~V~~v~~spd-g~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~  661 (695)
                      +....++..+ +.|..+...|+|+|. ..+|++.+.|+.|.+||++.... ..++. ...+.++|+|.++|. +||.|..
T Consensus       194 v~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s-~~~l~-y~~Plstvaf~~~G~-~L~aG~s  270 (673)
T KOG4378|consen  194 VQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS-TDRLT-YSHPLSTVAFSECGT-YLCAGNS  270 (673)
T ss_pred             ccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc-cceee-ecCCcceeeecCCce-EEEeecC
Confidence            9888777665 789999999999995 55789999999999999996443 44443 345789999999987 7889999


Q ss_pred             CCcEEEEECCC-CeEEEEEecCCCcEEEEEEeCC
Q 005473          662 NSEIRYWSINN-GSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       662 Dg~IriWDl~t-g~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      .|.|..||++. ..++.++.+|...|++|+| .|
T Consensus       271 ~G~~i~YD~R~~k~Pv~v~sah~~sVt~vaf-q~  303 (673)
T KOG4378|consen  271 KGELIAYDMRSTKAPVAVRSAHDASVTRVAF-QP  303 (673)
T ss_pred             CceEEEEecccCCCCceEeeecccceeEEEe-ee
Confidence            99999999985 5789999999999999999 76

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.52  E-value=5.8e-14  Score=150.49  Aligned_cols=169  Identities=17%  Similarity=0.174  Sum_probs=131.4

Q ss_pred             CCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005473          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (695)
Q Consensus       504 ~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWD  583 (695)
                      ...+-+.+|+.-.+|.+|+.....                 .+....+....-.+++++.+||.++.++++.||.|.|||
T Consensus       475 pdgrtLivGGeastlsiWDLAapT-----------------prikaeltssapaCyALa~spDakvcFsccsdGnI~vwD  537 (705)
T KOG0639|consen  475 PDGRTLIVGGEASTLSIWDLAAPT-----------------PRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWD  537 (705)
T ss_pred             CCCceEEeccccceeeeeeccCCC-----------------cchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEE
Confidence            334566777777888888553221                 111122223333477899999999999999999999999


Q ss_pred             CCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC
Q 005473          584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (695)
Q Consensus       584 l~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg  663 (695)
                      +.+...++.|.||++.+.||.++++|..|.||+-|.+||.||+++++.. ... ...+-|+++..+|++.+ ++.|-+++
T Consensus       538 Lhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql-qqh-dF~SQIfSLg~cP~~dW-lavGMens  614 (705)
T KOG0639|consen  538 LHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL-QQH-DFSSQIFSLGYCPTGDW-LAVGMENS  614 (705)
T ss_pred             cccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh-hhh-hhhhhheecccCCCccc-eeeecccC
Confidence            9999999999999999999999999999999999999999999987652 221 13467999999999985 55888899


Q ss_pred             cEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          664 EIRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       664 ~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      .|.|-.... ..-.-+.-|...|.++.| .+
T Consensus       615 ~vevlh~sk-p~kyqlhlheScVLSlKF-a~  643 (705)
T KOG0639|consen  615 NVEVLHTSK-PEKYQLHLHESCVLSLKF-AY  643 (705)
T ss_pred             cEEEEecCC-ccceeecccccEEEEEEe-cc
Confidence            888877654 334445578999999999 65

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.52  E-value=4.2e-14  Score=146.96  Aligned_cols=184  Identities=20%  Similarity=0.279  Sum_probs=138.2

Q ss_pred             eEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEE
Q 005473          483 SLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCH  562 (695)
Q Consensus       483 s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~  562 (695)
                      ..+..|-||..+|+-.++.+    ..+++|+.||.|++|+...                   ..+..++.+|.+.|..|+
T Consensus        60 ~~L~gHrdGV~~lakhp~~l----s~~aSGs~DG~VkiWnlsq-------------------R~~~~~f~AH~G~V~Gi~  116 (433)
T KOG0268|consen   60 GSLDGHRDGVSCLAKHPNKL----STVASGSCDGEVKIWNLSQ-------------------RECIRTFKAHEGLVRGIC  116 (433)
T ss_pred             hhccccccccchhhcCcchh----hhhhccccCceEEEEehhh-------------------hhhhheeecccCceeeEE
Confidence            34466777776666666543    4569999999999996532                   245677889999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCC---------------------------Ce-----------EEEEecccCCCeEEEE
Q 005473          563 FSPDGKLLATGGHDKKAVLWCTES---------------------------FT-----------VKSTLEEHTQWITDVR  604 (695)
Q Consensus       563 fspdg~~LaSgs~Dg~V~IWDl~t---------------------------~~-----------~~~~l~~H~~~V~~v~  604 (695)
                      +..  ..+++++.|++|+.|-++.                           |+           ++..+.--.+.|.++.
T Consensus       117 v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svk  194 (433)
T KOG0268|consen  117 VTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVK  194 (433)
T ss_pred             ecc--cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEe
Confidence            976  6788888899999886421                           11           2222222345678899


Q ss_pred             EcCC-CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-CeEEEEEecC
Q 005473          605 FSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKNF  682 (695)
Q Consensus       605 ~spd-g~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t-g~~v~~~~~h  682 (695)
                      |+|. ...|++++.|+.|.|||++.....-+...  .-....|+|+|. ...|++|++|..++.||++. ..++.++++|
T Consensus       195 fNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~--~mRTN~IswnPe-afnF~~a~ED~nlY~~DmR~l~~p~~v~~dh  271 (433)
T KOG0268|consen  195 FNPVETSILASCASDRSIVLYDLRQASPLKKVIL--TMRTNTICWNPE-AFNFVAANEDHNLYTYDMRNLSRPLNVHKDH  271 (433)
T ss_pred             cCCCcchheeeeccCCceEEEecccCCccceeee--eccccceecCcc-ccceeeccccccceehhhhhhcccchhhccc
Confidence            9995 45778888999999999998775323332  234678999995 45778999999999999987 5789999999


Q ss_pred             CCcEEEEEEeCCC
Q 005473          683 FESFVSVRVVQPR  695 (695)
Q Consensus       683 ~~~VtsVaf~sPd  695 (695)
                      .+.|.+|+| +|.
T Consensus       272 vsAV~dVdf-spt  283 (433)
T KOG0268|consen  272 VSAVMDVDF-SPT  283 (433)
T ss_pred             ceeEEEecc-CCC
Confidence            999999999 984

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.49  E-value=9.8e-14  Score=151.87  Aligned_cols=153  Identities=18%  Similarity=0.228  Sum_probs=124.6

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE  585 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~  585 (695)
                      .-++.++.|+.|++|....+..            ......+.+.+.+|..+|+++.|+| -..+|+++++|.+|+|||+.
T Consensus       641 ~rLAVa~ddg~i~lWr~~a~gl------------~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~  708 (1012)
T KOG1445|consen  641 ERLAVATDDGQINLWRLTANGL------------PENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA  708 (1012)
T ss_pred             HHeeecccCceEEEEEeccCCC------------CcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence            5678899999999997765532            1233456678899999999999999 45689999999999999999


Q ss_pred             CCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC-CCeEEEEEecCCCeEEEEEe---C
Q 005473          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCD---N  661 (695)
Q Consensus       586 t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~-~~V~sl~fspdg~~llaSgs---~  661 (695)
                      +++....+.+|++.|..++|+|+|++++|.|.||+|+||+.+.+..++..-.+.. ...-.|.|.-||.+++|+|-   .
T Consensus       709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~S  788 (1012)
T KOG1445|consen  709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSS  788 (1012)
T ss_pred             hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccc
Confidence            9999999999999999999999999999999999999999998777666554433 23456788889998887764   2


Q ss_pred             CCcEEEEECC
Q 005473          662 NSEIRYWSIN  671 (695)
Q Consensus       662 Dg~IriWDl~  671 (695)
                      ...|.+||..
T Consensus       789 eRQv~~Y~Aq  798 (1012)
T KOG1445|consen  789 ERQVQMYDAQ  798 (1012)
T ss_pred             hhhhhhhhhh
Confidence            3456677654

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.49  E-value=3.6e-13  Score=144.41  Aligned_cols=197  Identities=17%  Similarity=0.231  Sum_probs=154.6

Q ss_pred             CCCCCceEEEEecCCCccccccCCc-----------cCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCcee
Q 005473          477 NGASSKSLLMFGSDGMGSLTSAPNQ-----------LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF  545 (695)
Q Consensus       477 s~s~~~s~l~~~~dg~~~la~s~~~-----------l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~  545 (695)
                      +...++.+..|..++. .-.++...           +...+.++++|+..+.|++|+....                   
T Consensus        52 s~~gdk~~~~~~K~g~-~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k-------------------  111 (673)
T KOG4378|consen   52 SMAGDKVMRIKEKDGK-TPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAK-------------------  111 (673)
T ss_pred             ecCCceeEEEecccCC-CCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHH-------------------
Confidence            3456777777777765 11111111           1233478999999999999965322                   


Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccc-CCCeEEEEEcCCCC-EEEEEeCCCeEEE
Q 005473          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLS-RLATSSADRTVRV  623 (695)
Q Consensus       546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H-~~~V~~v~~spdg~-~LaTgs~DgtIrv  623 (695)
                      .+.+.+++|.+.|+||.|+....|||+++..|.|.|..+.++.....|... ...|.-++|+|..+ +|.+++++|.|.+
T Consensus       112 l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtl  191 (673)
T KOG4378|consen  112 LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTL  191 (673)
T ss_pred             HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEE
Confidence            345677899999999999999999999999999999999988877777544 34566899999765 4678899999999


Q ss_pred             EECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       624 WDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ||+............|..+...|||+|..+.||++.+.|..|.+||++....+..+. ...+.++|+| .|+
T Consensus       192 wDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf-~~~  261 (673)
T KOG4378|consen  192 WDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAF-SEC  261 (673)
T ss_pred             EeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeee-cCC
Confidence            999876654566778999999999999999999999999999999999877777764 4467788998 764

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=6.9e-13  Score=136.31  Aligned_cols=144  Identities=24%  Similarity=0.369  Sum_probs=122.1

Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC--CCeEEE
Q 005473          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRV  623 (695)
Q Consensus       546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~--DgtIrv  623 (695)
                      ++.+.++.-.+.|+++.|+.+|.+|++++.|-+|+|||+.+++.++++..++..|..++|-.....++.++.  |.+||.
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry   84 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY   84 (311)
T ss_pred             ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence            344455556778999999999999999999999999999999999999988889999999776666666665  889999


Q ss_pred             EECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       624 WDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      .++.+.+. ++.|.||...|.+++.+|-++ .+++++.|++||+||++..+|...+.....+  .+|| +|
T Consensus        85 Lsl~dNky-lRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~Af-Dp  150 (311)
T KOG1446|consen   85 LSLHDNKY-LRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAF-DP  150 (311)
T ss_pred             EEeecCce-EEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEecCCCc--ceeE-CC
Confidence            99998775 999999999999999999986 5669999999999999988888777644333  3455 55

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.49  E-value=2.7e-13  Score=150.15  Aligned_cols=167  Identities=19%  Similarity=0.358  Sum_probs=134.4

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEE
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP---DGKLLATGGHDKKAVLWC  583 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fsp---dg~~LaSgs~Dg~V~IWD  583 (695)
                      ..+++|..-|++++++...                   ......+.+|...|.|+.|+.   ..++||+|+.|..|.|||
T Consensus       472 qhLAsGDr~GnlrVy~Lq~-------------------l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~D  532 (1080)
T KOG1408|consen  472 QHLASGDRGGNLRVYDLQE-------------------LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYD  532 (1080)
T ss_pred             ceecccCccCceEEEEehh-------------------hhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEe
Confidence            7889999999999995422                   234556789999999999987   457999999999999999


Q ss_pred             CCC-CeEEEEecccC-------------------------------------------------CCeEEEEEcCCCCEEE
Q 005473          584 TES-FTVKSTLEEHT-------------------------------------------------QWITDVRFSPSLSRLA  613 (695)
Q Consensus       584 l~t-~~~~~~l~~H~-------------------------------------------------~~V~~v~~spdg~~La  613 (695)
                      +.. ..++.++.+|.                                                 ..+++++..|..++++
T Consensus       533 v~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~  612 (1080)
T KOG1408|consen  533 VKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVV  612 (1080)
T ss_pred             cccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEE
Confidence            852 12222233332                                                 3466777777778999


Q ss_pred             EEeCCCeEEEEECCCCCeeEEEEec---CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEE
Q 005473          614 TSSADRTVRVWDTENPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVR  690 (695)
Q Consensus       614 Tgs~DgtIrvWDl~t~~~~l~~~~g---h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVa  690 (695)
                      +++.|+.|+|||+.+++. ++.|++   |.+....|...|.|- ++++...|.++.|+|+-+|+|+....||+..|+.|.
T Consensus       613 t~cQDrnirif~i~sgKq-~k~FKgs~~~eG~lIKv~lDPSgi-Y~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~k  690 (1080)
T KOG1408|consen  613 TVCQDRNIRIFDIESGKQ-VKSFKGSRDHEGDLIKVILDPSGI-YLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVK  690 (1080)
T ss_pred             EEecccceEEEeccccce-eeeecccccCCCceEEEEECCCcc-EEEEeecCCceEEEEeccchhhhhhcCcchheeeee
Confidence            999999999999999875 677764   667788899999987 555666699999999999999999999999999999


Q ss_pred             EeCCC
Q 005473          691 VVQPR  695 (695)
Q Consensus       691 f~sPd  695 (695)
                      | .+|
T Consensus       691 F-~nD  694 (1080)
T KOG1408|consen  691 F-LND  694 (1080)
T ss_pred             e-ccc
Confidence            9 775

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.49  E-value=2.8e-13  Score=143.61  Aligned_cols=167  Identities=19%  Similarity=0.207  Sum_probs=129.9

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      ..+++|+.|+++|+|.++..                   ..+.....|...|.+++|+|||++|++-+.| ..+||++++
T Consensus       157 s~latgg~dg~lRv~~~Ps~-------------------~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~  216 (398)
T KOG0771|consen  157 SKLATGGTDGTLRVWEWPSM-------------------LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNT  216 (398)
T ss_pred             CEeeeccccceEEEEecCcc-------------------hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEecc
Confidence            67899999999999976543                   2334456788899999999999999999999 899999999


Q ss_pred             CeEEEEec--ccCCCeEEEEEcCCC-----CEEEEEeCCCeEEEEECCCCCe----eEEEEecCCCCeEEEEEecCCCeE
Q 005473          587 FTVKSTLE--EHTQWITDVRFSPSL-----SRLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDFHPSKEDL  655 (695)
Q Consensus       587 ~~~~~~l~--~H~~~V~~v~~spdg-----~~LaTgs~DgtIrvWDl~t~~~----~l~~~~gh~~~V~sl~fspdg~~l  655 (695)
                      +.++....  +....+..|+|+-++     .+++.....+.|++||+...+.    ..+....-...|++++.+++|+ +
T Consensus       217 g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk-f  295 (398)
T KOG0771|consen  217 GAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK-F  295 (398)
T ss_pred             CchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCc-E
Confidence            97766554  234456778888776     2333344566788887754332    2222222334699999999998 8


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEEe-cCCCcEEEEEEeCCC
Q 005473          656 LCSCDNNSEIRYWSINNGSCAGVFK-NFFESFVSVRVVQPR  695 (695)
Q Consensus       656 laSgs~Dg~IriWDl~tg~~v~~~~-~h~~~VtsVaf~sPd  695 (695)
                      ++.|+.||.|-|++..+-+++..++ +|..-||.|.| .|+
T Consensus       296 ~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF-~Pd  335 (398)
T KOG0771|consen  296 LALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTF-SPD  335 (398)
T ss_pred             EEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEE-cCC
Confidence            8899999999999999988888887 89999999999 996

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.49  E-value=3.6e-13  Score=149.26  Aligned_cols=185  Identities=21%  Similarity=0.281  Sum_probs=136.0

Q ss_pred             EEEEeeCCCcEEEEeCCCCCCC----CCccc--------------cccccCCCceeeeEEEecCCCCCeEEEEEcCCCCE
Q 005473          508 FVDDGSLDDNVESFLSPDDADP----RDRVG--------------RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKL  569 (695)
Q Consensus       508 ~lasgS~D~~V~lw~~~~~~~~----~~~~~--------------~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~  569 (695)
                      .+.++|.|++|++|+.......    +..+.              -+.+...+.--+......+..-.|.|++++|+|.+
T Consensus       394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh  473 (1080)
T KOG1408|consen  394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH  473 (1080)
T ss_pred             ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence            4678999999999987652211    11110              01111111111112222344556999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcC---CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEE
Q 005473          570 LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP---SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL  646 (695)
Q Consensus       570 LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~sp---dg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl  646 (695)
                      ||+|...|+++|||+...+....+++|...|.|+.|+.   ..++|++++.|+-|+|||+...-.++.++.+|.+.|++|
T Consensus       474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsv  553 (1080)
T KOG1408|consen  474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSV  553 (1080)
T ss_pred             ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEE
Confidence            99999999999999999999999999999999999985   356899999999999999986555567777777777777


Q ss_pred             EEec-------------------------------------------------CCCeEEEEEeCCCcEEEEECCCCeEEE
Q 005473          647 DFHP-------------------------------------------------SKEDLLCSCDNNSEIRYWSINNGSCAG  677 (695)
Q Consensus       647 ~fsp-------------------------------------------------dg~~llaSgs~Dg~IriWDl~tg~~v~  677 (695)
                      .|.-                                                 ..+ ++++++.|..|||||+.+|+.++
T Consensus       554 KFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t~cQDrnirif~i~sgKq~k  632 (1080)
T KOG1408|consen  554 KFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK-LVVTVCQDRNIRIFDIESGKQVK  632 (1080)
T ss_pred             EEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcc-eEEEEecccceEEEeccccceee
Confidence            6643                                                 323 45788899999999999999999


Q ss_pred             EEec---CCCcEEEEEEeCC
Q 005473          678 VFKN---FFESFVSVRVVQP  694 (695)
Q Consensus       678 ~~~~---h~~~VtsVaf~sP  694 (695)
                      .|++   |.+....|.. .|
T Consensus       633 ~FKgs~~~eG~lIKv~l-DP  651 (1080)
T KOG1408|consen  633 SFKGSRDHEGDLIKVIL-DP  651 (1080)
T ss_pred             eecccccCCCceEEEEE-CC
Confidence            9994   5555666655 55

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=1.5e-12  Score=144.50  Aligned_cols=204  Identities=16%  Similarity=0.212  Sum_probs=150.1

Q ss_pred             CceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCC-------CCCcc--------------------
Q 005473          481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDAD-------PRDRV--------------------  533 (695)
Q Consensus       481 ~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~-------~~~~~--------------------  533 (695)
                      .+.-+.|.|.+..+++.+...     +-+|.+-.|++|++|+...+..       +.++.                    
T Consensus        17 rcrf~d~~Ps~I~slA~s~kS-----~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~   91 (691)
T KOG2048|consen   17 RCRFVDYKPSEIVSLAYSHKS-----NQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGS   91 (691)
T ss_pred             EEEEEeeeccceEEEEEeccC-----CceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCce
Confidence            344556666666666655543     5578888899999987654321       11111                    


Q ss_pred             ccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE--EEecccCCCeEEEEEcCCCCE
Q 005473          534 GRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSR  611 (695)
Q Consensus       534 ~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~--~~l~~H~~~V~~v~~spdg~~  611 (695)
                      ...||..+   .+....+....+.|.+++.+|.+..++.|++||.+.+++...++..  +.|...++.|.++.|+|++..
T Consensus        92 i~EwDl~~---lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~  168 (691)
T KOG2048|consen   92 ITEWDLHT---LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK  168 (691)
T ss_pred             EEEEeccc---CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccE
Confidence            12222222   2445556667788999999999999999999998888888776654  344455799999999999999


Q ss_pred             EEEEeCCCeEEEEECCCCCeeE-E---EEe---cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCC
Q 005473          612 LATSSADRTVRVWDTENPDYSL-R---TFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFE  684 (695)
Q Consensus       612 LaTgs~DgtIrvWDl~t~~~~l-~---~~~---gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~  684 (695)
                      |++|+.||.|++||+..+.... .   ...   +...-|++|.|-.++  .+++|+.-|+|.+||...|..+..++.|..
T Consensus       169 i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a  246 (691)
T KOG2048|consen  169 IAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTLIQSHSCHDA  246 (691)
T ss_pred             EEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcchhhhhhhhhc
Confidence            9999999999999999876522 1   111   122347889888665  577999999999999999999999999999


Q ss_pred             cEEEEEEeCCC
Q 005473          685 SFVSVRVVQPR  695 (695)
Q Consensus       685 ~VtsVaf~sPd  695 (695)
                      .|.+++. .++
T Consensus       247 dVl~Lav-~~~  256 (691)
T KOG2048|consen  247 DVLALAV-ADN  256 (691)
T ss_pred             ceeEEEE-cCC
Confidence            9999987 653

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.47  E-value=8.7e-13  Score=133.92  Aligned_cols=196  Identities=18%  Similarity=0.260  Sum_probs=144.1

Q ss_pred             CCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 005473          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (695)
Q Consensus       477 s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~  556 (695)
                      .+.-+.+.+.|.|+..+.          ..+++|+.  +..+++|...++. .......+....+         -..+..
T Consensus        94 d~~YP~tK~~wiPd~~g~----------~pdlLATs--~D~LRlWri~~ee-~~~~~~~~L~~~k---------ns~~~a  151 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGV----------YPDLLATS--SDFLRLWRIGDEE-SRVELQSVLNNNK---------NSEFCA  151 (364)
T ss_pred             CCCCCccceEecCCcccc----------Ccchhhcc--cCeEEEEeccCcC-CceehhhhhccCc---------ccccCC
Confidence            344577788888877521          11556654  4689999775431 1111111111111         134567


Q ss_pred             CeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCe---EEEEecccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCe
Q 005473          557 KVESCHFSP-DGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDY  631 (695)
Q Consensus       557 ~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~t~~---~~~~l~~H~~~V~~v~~spdg-~~LaTgs~DgtIrvWDl~t~~~  631 (695)
                      ++++..|+. |-++|.+++-|.++.|||++++.   ....+.+|...|++|+|...+ ..||+.+.||.||+||+|....
T Consensus       152 PlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH  231 (364)
T KOG0290|consen  152 PLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH  231 (364)
T ss_pred             cccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc
Confidence            899999987 67799999999999999999863   466788999999999999854 4689999999999999998665


Q ss_pred             eEEEEecC--CCCeEEEEEecCCCeEEEEEeCC-CcEEEEECCC-CeEEEEEecCCCcEEEEEEeCCC
Q 005473          632 SLRTFTGH--STTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINN-GSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       632 ~l~~~~gh--~~~V~sl~fspdg~~llaSgs~D-g~IriWDl~t-g~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ..-.+...  ......++|++...+++|+-..| ..|.|-|+|. ..++..+.+|.+.|..|+| +|.
T Consensus       232 STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaW-aPh  298 (364)
T KOG0290|consen  232 STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAW-APH  298 (364)
T ss_pred             ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEe-cCC
Confidence            33344432  35678899999888888776544 5699999996 5788999999999999999 983

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.47  E-value=8.3e-12  Score=130.07  Aligned_cols=134  Identities=15%  Similarity=0.100  Sum_probs=104.2

Q ss_pred             CeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEecccC-------CCeEEEEEcCCCCEEEE-EeCCCeEEEEECC
Q 005473          557 KVESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHT-------QWITDVRFSPSLSRLAT-SSADRTVRVWDTE  627 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSg-s~Dg~V~IWDl~t~~~~~~l~~H~-------~~V~~v~~spdg~~LaT-gs~DgtIrvWDl~  627 (695)
                      .+.++.|++++++|+.+ ..|+.|++||+++++++..+..+.       .....++|+|+++++++ .+.++.|.+||++
T Consensus       158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~  237 (300)
T TIGR03866       158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK  237 (300)
T ss_pred             CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence            35789999999988554 469999999999988877664321       12356889999998655 4557789999998


Q ss_pred             CCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       628 t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      +.+. +..+. +...+.+++|+|+|..++++++.++.|++||+++++++..++.+. ..+.|+| +|
T Consensus       238 ~~~~-~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~-~~  300 (300)
T TIGR03866       238 TYEV-LDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGR-LPWGVVV-RP  300 (300)
T ss_pred             CCcE-EEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccc-ccceeEe-CC
Confidence            7654 44332 445799999999999776566679999999999999999998764 4499998 76

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=1.3e-12  Score=139.59  Aligned_cols=202  Identities=15%  Similarity=0.204  Sum_probs=149.4

Q ss_pred             cccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCC--------------------------
Q 005473          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA--------------------------  527 (695)
Q Consensus       474 l~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~--------------------------  527 (695)
                      ..+.....++++.|||..               .++.+++.|+++++|-+....                          
T Consensus       208 a~~ps~~~I~sv~FHp~~---------------plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~  272 (514)
T KOG2055|consen  208 AAHPSHGGITSVQFHPTA---------------PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSV  272 (514)
T ss_pred             cCCcCcCCceEEEecCCC---------------ceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceE
Confidence            333344566677777654               456667777777777543321                          


Q ss_pred             ---CCCCccccccccCCCceeeeEEEecCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEE
Q 005473          528 ---DPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV  603 (695)
Q Consensus       528 ---~~~~~~~~~~d~~~~~~~~~v~~l~~H~-~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v  603 (695)
                         .++.++...|+..++ .+..++.+.++. ..+....+++++++|+.+|..|.|.|....+++.+.+++- .+.|.++
T Consensus       273 i~~s~rrky~ysyDle~a-k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~  350 (514)
T KOG2055|consen  273 IFTSGRRKYLYSYDLETA-KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDF  350 (514)
T ss_pred             EEecccceEEEEeecccc-ccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeE
Confidence               122233344554443 223344444544 3467888999999999999999999999999999888874 6889999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC-CCeEEEEEecCCCeEEEEEeCCCcEEEEECC------CCeEE
Q 005473          604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN------NGSCA  676 (695)
Q Consensus       604 ~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~-~~V~sl~fspdg~~llaSgs~Dg~IriWDl~------tg~~v  676 (695)
                      +|+.+++.|+.++.+|.|++||++... |+..+.... -.-+++|.++++. +||+|+..|.|.|||..      +.+++
T Consensus       351 ~fsSdsk~l~~~~~~GeV~v~nl~~~~-~~~rf~D~G~v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~~~s~~PkPi  428 (514)
T KOG2055|consen  351 TFSSDSKELLASGGTGEVYVWNLRQNS-CLHRFVDDGSVHGTSLCISLNGS-YLATGSDSGIVNIYDGNSCFASTNPKPI  428 (514)
T ss_pred             EEecCCcEEEEEcCCceEEEEecCCcc-eEEEEeecCccceeeeeecCCCc-eEEeccCcceEEEeccchhhccCCCCch
Confidence            999999999999999999999999864 577776432 2346777788988 88899999999999965      35788


Q ss_pred             EEEecCCCcEEEEEEeCCC
Q 005473          677 GVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       677 ~~~~~h~~~VtsVaf~sPd  695 (695)
                      ..+..-+..|++|.| +||
T Consensus       429 k~~dNLtt~Itsl~F-n~d  446 (514)
T KOG2055|consen  429 KTVDNLTTAITSLQF-NHD  446 (514)
T ss_pred             hhhhhhheeeeeeee-Ccc
Confidence            888888899999999 886

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.46  E-value=7.5e-13  Score=134.42  Aligned_cols=170  Identities=13%  Similarity=0.207  Sum_probs=135.8

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTE  585 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~-~LaSgs~Dg~V~IWDl~  585 (695)
                      +++.+.|.|.+..+|+...+.                .......+.+|...|..|+|..++. .||+.|.||.||+||++
T Consensus       164 ~~igtSSiDTTCTiWdie~~~----------------~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR  227 (364)
T KOG0290|consen  164 NLIGTSSIDTTCTIWDIETGV----------------SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR  227 (364)
T ss_pred             ceeEeecccCeEEEEEEeecc----------------ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence            788999999999999765431                1123455779999999999998665 89999999999999999


Q ss_pred             CCeEEEEeccc---CCCeEEEEEcC-CCCEEEEEeCC-CeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEe
Q 005473          586 SFTVKSTLEEH---TQWITDVRFSP-SLSRLATSSAD-RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (695)
Q Consensus       586 t~~~~~~l~~H---~~~V~~v~~sp-dg~~LaTgs~D-gtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs  660 (695)
                      ..+.-..+.+.   ..+...++|++ |-+++||-..| ..|.|.|+|.+..++..+.+|.+.|..++|.|.....||+|+
T Consensus       228 ~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG  307 (364)
T KOG0290|consen  228 SLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG  307 (364)
T ss_pred             ccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC
Confidence            87766555332   45778889988 45677876555 569999999998899999999999999999999999999999


Q ss_pred             CCCcEEEEECCCC------eEEEEEecCCCcEEEEEEeCC
Q 005473          661 NNSEIRYWSINNG------SCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       661 ~Dg~IriWDl~tg------~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      .|..+.|||+..-      .++..+. ..+.|..|.| +|
T Consensus       308 DD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~W-s~  345 (364)
T KOG0290|consen  308 DDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQW-SS  345 (364)
T ss_pred             CcceEEEEecccccccCCCCchhhhh-ccceeeeeee-cc
Confidence            9999999999642      2344444 4467788888 64

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.46  E-value=1.9e-13  Score=151.66  Aligned_cols=147  Identities=20%  Similarity=0.340  Sum_probs=126.4

Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCe
Q 005473          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT  620 (695)
Q Consensus       546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs~D-----g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~Dgt  620 (695)
                      .+++.+.||...|+||+.+|++++|||++..     -.|+||+..+...+..+.+|.-.|+.++|+||+++|++.|.|++
T Consensus       516 PEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt  595 (764)
T KOG1063|consen  516 PEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRT  595 (764)
T ss_pred             hhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCce
Confidence            4567778999999999999999999999864     35899999998888899999999999999999999999999999


Q ss_pred             EEEEECCCCCee---EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC--eEEEE--EecCCCcEEEEEEeC
Q 005473          621 VRVWDTENPDYS---LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGV--FKNFFESFVSVRVVQ  693 (695)
Q Consensus       621 IrvWDl~t~~~~---l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg--~~v~~--~~~h~~~VtsVaf~s  693 (695)
                      +.+|........   ......|+.-|++++|+|++. .|++++.|.+|.||.....  +++..  ...++.+|++|+| .
T Consensus       596 ~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~-~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~-~  673 (764)
T KOG1063|consen  596 VSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEK-YFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAY-L  673 (764)
T ss_pred             EEeeeeecccchhhhhccccccceEEEEcccCcccc-eeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEe-e
Confidence            999988654322   234678999999999999987 5889999999999999877  55544  3378899999999 7


Q ss_pred             C
Q 005473          694 P  694 (695)
Q Consensus       694 P  694 (695)
                      |
T Consensus       674 ~  674 (764)
T KOG1063|consen  674 P  674 (764)
T ss_pred             c
Confidence            6

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.45  E-value=9.6e-13  Score=142.60  Aligned_cols=179  Identities=17%  Similarity=0.180  Sum_probs=131.9

Q ss_pred             CCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCC---CCCC--------ccccccccCCCceeeeE
Q 005473          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA---DPRD--------RVGRSAEVGKGFTFTEF  548 (695)
Q Consensus       480 ~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~---~~~~--------~~~~~~d~~~~~~~~~v  548 (695)
                      ..++++.|-+.+.              ..+...=+++++.+++.....   .+..        .....+...  ..-.++
T Consensus       220 tsvT~ikWvpg~~--------------~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk--~~rNPv  283 (636)
T KOG2394|consen  220 SSVTCIKWVPGSD--------------SLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSK--KTRNPV  283 (636)
T ss_pred             cceEEEEEEeCCC--------------ceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeecc--ccCCcc
Confidence            6788888888654              333444477888887442111   0000        000111111  111334


Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005473          549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (695)
Q Consensus       549 ~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t  628 (695)
                      ..+.-..+.|..++|+|||++||+.+.||.+||||..+.+++..++..-+...||+|+|||++|+||+.|--|.||.+..
T Consensus       284 ~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e  363 (636)
T KOG2394|consen  284 ARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE  363 (636)
T ss_pred             ceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc
Confidence            44444556899999999999999999999999999999888888877778899999999999999999999999999998


Q ss_pred             CCeeEEEEecCCCCeEEEEEec-----------------------------------C------------CCeEEEEEeC
Q 005473          629 PDYSLRTFTGHSTTVMSLDFHP-----------------------------------S------------KEDLLCSCDN  661 (695)
Q Consensus       629 ~~~~l~~~~gh~~~V~sl~fsp-----------------------------------d------------g~~llaSgs~  661 (695)
                      .+. +..-.||+++|..|+|+|                                   +            -.+-|.+.+.
T Consensus       364 rRV-VARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGq  442 (636)
T KOG2394|consen  364 RRV-VARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQ  442 (636)
T ss_pred             ceE-EEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccc
Confidence            664 888899999999999984                                   0            1234667788


Q ss_pred             CCcEEEEECCCCeE
Q 005473          662 NSEIRYWSINNGSC  675 (695)
Q Consensus       662 Dg~IriWDl~tg~~  675 (695)
                      |..+.+||+.....
T Consensus       443 DTqlcLWDlteD~L  456 (636)
T KOG2394|consen  443 DTQLCLWDLTEDVL  456 (636)
T ss_pred             cceEEEEecchhhc
Confidence            99999999976433

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=2.2e-12  Score=132.25  Aligned_cols=166  Identities=17%  Similarity=0.245  Sum_probs=122.4

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      .++|.|+.||.|.+|+...                   ++..+.+.+|..+|.|++||+||++|++++.|..|.+||+..
T Consensus        36 ~~lAvGc~nG~vvI~D~~T-------------------~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~   96 (405)
T KOG1273|consen   36 DYLAVGCANGRVVIYDFDT-------------------FRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK   96 (405)
T ss_pred             ceeeeeccCCcEEEEEccc-------------------cchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccC
Confidence            7899999999999996632                   234456789999999999999999999999999999999987


Q ss_pred             CeEEEEecccCCCe-----------------------------------------------EEEEEcCCCCEEEEEeCCC
Q 005473          587 FTVKSTLEEHTQWI-----------------------------------------------TDVRFSPSLSRLATSSADR  619 (695)
Q Consensus       587 ~~~~~~l~~H~~~V-----------------------------------------------~~v~~spdg~~LaTgs~Dg  619 (695)
                      +.++..++- .++|                                               .+..|.+.|+++++|...|
T Consensus        97 gs~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKG  175 (405)
T KOG1273|consen   97 GSPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKG  175 (405)
T ss_pred             CCceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcc
Confidence            766554431 1111                                               1122555678889998889


Q ss_pred             eEEEEECCCCCeeEEEEe---------------------------------------cCCCCe---------------EE
Q 005473          620 TVRVWDTENPDYSLRTFT---------------------------------------GHSTTV---------------MS  645 (695)
Q Consensus       620 tIrvWDl~t~~~~l~~~~---------------------------------------gh~~~V---------------~s  645 (695)
                      .+.|+|..+-+ |+..++                                       +..+.+               .+
T Consensus       176 kllv~~a~t~e-~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~  254 (405)
T KOG1273|consen  176 KLLVYDAETLE-CVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK  254 (405)
T ss_pred             eEEEEecchhe-eeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence            99999887643 222111                                       011111               26


Q ss_pred             EEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCC-CcEEEEEEeCC
Q 005473          646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFF-ESFVSVRVVQP  694 (695)
Q Consensus       646 l~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~-~~VtsVaf~sP  694 (695)
                      ++|+.+|.+++++...-..++||.-..|..++.+.|.. .....|.| ||
T Consensus       255 ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~w-hp  303 (405)
T KOG1273|consen  255 CCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNW-HP  303 (405)
T ss_pred             eeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccc-cc
Confidence            78888988777666677889999999999999998877 56677888 76

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.45  E-value=7.6e-14  Score=156.90  Aligned_cols=165  Identities=25%  Similarity=0.363  Sum_probs=136.9

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      ++|.+|+.|..|++|...+.                   .+....+||.+.|+.++.+.+..++++++.|+.|++|.+.+
T Consensus       203 ~~Iitgsdd~lvKiwS~et~-------------------~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~  263 (1113)
T KOG0644|consen  203 RYIITGSDDRLVKIWSMETA-------------------RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD  263 (1113)
T ss_pred             ceEeecCccceeeeeeccch-------------------hhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence            89999999999999954332                   45677789999999999999999999999999999999999


Q ss_pred             CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-CCC--------------e--------------------
Q 005473          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE-NPD--------------Y--------------------  631 (695)
Q Consensus       587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~-t~~--------------~--------------------  631 (695)
                      +.++..+.+|++.|++|+|+|-    .+.+.||++++||.+ ...              .                    
T Consensus       264 ~~pvsvLrghtgavtaiafsP~----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~e  339 (1113)
T KOG0644|consen  264 GAPVSVLRGHTGAVTAIAFSPR----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGE  339 (1113)
T ss_pred             CchHHHHhccccceeeeccCcc----ccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcc
Confidence            9999999999999999999984    377889999999987 000              0                    


Q ss_pred             --------------------------------------e---------EEEEecCCCCeEEEEEecCCCeEEEEEeCCCc
Q 005473          632 --------------------------------------S---------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (695)
Q Consensus       632 --------------------------------------~---------l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~  664 (695)
                                                            |         +..+.+|...+..+.+||-.+.+..+++.||.
T Consensus       340 a~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgs  419 (1113)
T KOG0644|consen  340 ARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGS  419 (1113)
T ss_pred             cccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCc
Confidence                                                  0         01123677889999999999988899999999


Q ss_pred             EEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          665 IRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       665 IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +.|||+-.|.+++.+....+.+..-+| +++
T Consensus       420 t~iwdi~eg~pik~y~~gh~kl~d~kF-Sqd  449 (1113)
T KOG0644|consen  420 TIIWDIWEGIPIKHYFIGHGKLVDGKF-SQD  449 (1113)
T ss_pred             eEeeecccCCcceeeecccceeecccc-CCC
Confidence            999999999888776644456666777 654

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.44  E-value=1.5e-11  Score=128.20  Aligned_cols=163  Identities=12%  Similarity=0.070  Sum_probs=119.2

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE  585 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~L-aSgs~Dg~V~IWDl~  585 (695)
                      .++++++.|+.|++|+...+                   ..+..+..+.. +.+++|+|+++.+ ++++.|+.|++||+.
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~-------------------~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~   61 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATL-------------------EVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLA   61 (300)
T ss_pred             cEEEEecCCCEEEEEECCCC-------------------ceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECC
Confidence            56788899999999965322                   23344444443 6789999999976 566788999999999


Q ss_pred             CCeEEEEecccCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC-C
Q 005473          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-S  663 (695)
Q Consensus       586 t~~~~~~l~~H~~~V~~v~~spdg~~LaTg-s~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D-g  663 (695)
                      +++.+..+..+.. +..++|+|+++.++++ +.|+.|++||+++.. .+..+.. ...+.+++|+|++..++ +++.+ .
T Consensus        62 ~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~-~~~~~~~-~~~~~~~~~~~dg~~l~-~~~~~~~  137 (300)
T TIGR03866        62 TGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRK-VLAEIPV-GVEPEGMAVSPDGKIVV-NTSETTN  137 (300)
T ss_pred             CCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCe-EEeEeeC-CCCcceEEECCCCCEEE-EEecCCC
Confidence            9888877765544 5688999999877654 568999999999755 3555542 34578899999998555 55544 4


Q ss_pred             cEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          664 EIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       664 ~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      .+++||.++++++..+... ..+.+++| +|+
T Consensus       138 ~~~~~d~~~~~~~~~~~~~-~~~~~~~~-s~d  167 (300)
T TIGR03866       138 MAHFIDTKTYEIVDNVLVD-QRPRFAEF-TAD  167 (300)
T ss_pred             eEEEEeCCCCeEEEEEEcC-CCccEEEE-CCC
Confidence            6788899988887665433 33467888 764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=2.3e-12  Score=128.04  Aligned_cols=164  Identities=15%  Similarity=0.176  Sum_probs=121.6

Q ss_pred             CCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005473          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (695)
Q Consensus       503 ~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IW  582 (695)
                      .+..+|++.|+.+|.|.++....-..+..         .......+...++|.++|+.++|.  ..+|++|+ ||.|+-|
T Consensus        19 sp~~~~l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw   86 (325)
T KOG0649|consen   19 SPSKQYLFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGW   86 (325)
T ss_pred             CCcceEEEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEe
Confidence            34458999999999999985543211110         111223455568999999999998  45777777 6999998


Q ss_pred             ECCCCeE------EE--EecccC-----CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEe
Q 005473          583 CTESFTV------KS--TLEEHT-----QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH  649 (695)
Q Consensus       583 Dl~t~~~------~~--~l~~H~-----~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fs  649 (695)
                      -.+....      +.  ....|.     -.|+++-..|..+-+++++.|+.++.||+++++. .++++||++.|-++.-.
T Consensus        87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i-~r~~rGHtDYvH~vv~R  165 (325)
T KOG0649|consen   87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRI-QREYRGHTDYVHSVVGR  165 (325)
T ss_pred             eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEE-EEEEcCCcceeeeeeec
Confidence            7643221      11  111232     3588999999877777777899999999999886 79999999999999984


Q ss_pred             cCCCeEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473          650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  680 (695)
Q Consensus       650 pdg~~llaSgs~Dg~IriWDl~tg~~v~~~~  680 (695)
                      .....+| +|++||++||||+++++++..+.
T Consensus       166 ~~~~qil-sG~EDGtvRvWd~kt~k~v~~ie  195 (325)
T KOG0649|consen  166 NANGQIL-SGAEDGTVRVWDTKTQKHVSMIE  195 (325)
T ss_pred             ccCccee-ecCCCccEEEEeccccceeEEec
Confidence            4444355 99999999999999999998887

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.44  E-value=3e-11  Score=127.50  Aligned_cols=166  Identities=29%  Similarity=0.484  Sum_probs=134.7

Q ss_pred             cEEEEeeC-CCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEC
Q 005473          507 RFVDDGSL-DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCT  584 (695)
Q Consensus       507 ~~lasgS~-D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~-~LaSgs~Dg~V~IWDl  584 (695)
                      .+++.++. |+.+++|....                   ...+..+.+|...|.+++|+|++. ++++++.|+.|++||.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~  228 (466)
T COG2319         168 KLLASGSSLDGTIKLWDLRT-------------------GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL  228 (466)
T ss_pred             CEEEecCCCCCceEEEEcCC-------------------CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEEC
Confidence            46666664 99999996543                   235566677999999999999998 5666699999999999


Q ss_pred             CCCeEEE-EecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC
Q 005473          585 ESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (695)
Q Consensus       585 ~t~~~~~-~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg  663 (695)
                      ..+..+. .+.+|...+ ...|+|++.++++++.|+.+++||++.....+..+.+|...|.++.|+|++..+++ ++.|+
T Consensus       229 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~d~  306 (466)
T COG2319         229 STGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS-GSSDG  306 (466)
T ss_pred             CCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE-eeCCC
Confidence            9888887 688888876 44899998889999999999999999766434555788899999999998775664 88889


Q ss_pred             cEEEEECCCCeEEEEEe--cCCCcEEEEEEeCC
Q 005473          664 EIRYWSINNGSCAGVFK--NFFESFVSVRVVQP  694 (695)
Q Consensus       664 ~IriWDl~tg~~v~~~~--~h~~~VtsVaf~sP  694 (695)
                      .+++||+.+........  .|...|..+.| .|
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  338 (466)
T COG2319         307 TVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SP  338 (466)
T ss_pred             cEEEEEcCCCceEEEeeecccCCceEEEEE-CC
Confidence            99999999887777766  88888888887 54

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=3.5e-13  Score=156.84  Aligned_cols=189  Identities=17%  Similarity=0.234  Sum_probs=143.6

Q ss_pred             CCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeE
Q 005473          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE  559 (695)
Q Consensus       480 ~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~  559 (695)
                      ..-..+.|.+.+.+           ...+++.|..||+|.+|+...-             .++.....+.+...|++.|.
T Consensus        65 ~rF~kL~W~~~g~~-----------~~GlIaGG~edG~I~ly~p~~~-------------~~~~~~~~la~~~~h~G~V~  120 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSH-----------SHGLIAGGLEDGNIVLYDPASI-------------IANASEEVLATKSKHTGPVL  120 (1049)
T ss_pred             ccceeeeecccCCC-----------ccceeeccccCCceEEecchhh-------------ccCcchHHHhhhcccCCcee
Confidence            45567778776641           1157899999999999965321             12223345667788999999


Q ss_pred             EEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEec--ccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEE
Q 005473          560 SCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRT  635 (695)
Q Consensus       560 ~v~fspdg~-~LaSgs~Dg~V~IWDl~t~~~~~~l~--~H~~~V~~v~~spd-g~~LaTgs~DgtIrvWDl~t~~~~l~~  635 (695)
                      .+.|++... +||+|+.||.|+|||+...+.-.++.  ...+.|.+++|+.. ...|++++.+|++-|||++..+. +-.
T Consensus       121 gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p-ii~  199 (1049)
T KOG0307|consen  121 GLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP-IIK  199 (1049)
T ss_pred             eeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc-ccc
Confidence            999999765 99999999999999998754433332  23578999999874 55789999999999999998654 555


Q ss_pred             EecCCC--CeEEEEEecCCCeEEEEEeCC---CcEEEEECCC-CeEEEEEecCCCcEEEEEEeCC
Q 005473          636 FTGHST--TVMSLDFHPSKEDLLCSCDNN---SEIRYWSINN-GSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       636 ~~gh~~--~V~sl~fspdg~~llaSgs~D---g~IriWDl~t-g~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      +..|.+  .+..|.|||++..-+++++.|   -.|.+||+|. ..+++++.+|..+|.+|.| .|
T Consensus       200 ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsW-c~  263 (1049)
T KOG0307|consen  200 LSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSW-CP  263 (1049)
T ss_pred             cccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeecc-CC
Confidence            554543  478899999987666666544   4799999986 4688999999999999999 65

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.42  E-value=9.8e-13  Score=142.53  Aligned_cols=137  Identities=17%  Similarity=0.228  Sum_probs=111.9

Q ss_pred             CCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCC--------------C--------------eEEEEecccCCCeEEEEE
Q 005473          555 TSKVESCHFSPDGK-LLATGGHDKKAVLWCTES--------------F--------------TVKSTLEEHTQWITDVRF  605 (695)
Q Consensus       555 ~~~V~~v~fspdg~-~LaSgs~Dg~V~IWDl~t--------------~--------------~~~~~l~~H~~~V~~v~~  605 (695)
                      +..|+|+.|-|.+. .++.+-.+|.+++||..-              +              .++..+.--.+.|..++|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            36799999988554 666677899999997631              0              111112122457899999


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCc
Q 005473          606 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFES  685 (695)
Q Consensus       606 spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~  685 (695)
                      +|||.+||+.+.||.+||||..+.+. +..++..-+...||+|+|||+ +|++|++|-.|.||.+..++.|..-.+|..+
T Consensus       299 S~DG~~LA~VSqDGfLRvF~fdt~eL-lg~mkSYFGGLLCvcWSPDGK-yIvtGGEDDLVtVwSf~erRVVARGqGHkSW  376 (636)
T KOG2394|consen  299 SPDGKYLATVSQDGFLRIFDFDTQEL-LGVMKSYFGGLLCVCWSPDGK-YIVTGGEDDLVTVWSFEERRVVARGQGHKSW  376 (636)
T ss_pred             cCCCceEEEEecCceEEEeeccHHHH-HHHHHhhccceEEEEEcCCcc-EEEecCCcceEEEEEeccceEEEeccccccc
Confidence            99999999999999999999998553 555665667899999999999 6779999999999999999999999999999


Q ss_pred             EEEEEEeCC
Q 005473          686 FVSVRVVQP  694 (695)
Q Consensus       686 VtsVaf~sP  694 (695)
                      |+.|+| .|
T Consensus       377 Vs~VaF-Dp  384 (636)
T KOG2394|consen  377 VSVVAF-DP  384 (636)
T ss_pred             eeeEee-cc
Confidence            999999 76

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=1.3e-11  Score=126.53  Aligned_cols=175  Identities=17%  Similarity=0.272  Sum_probs=132.4

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEE
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKKAVLWC  583 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspd--g~~LaSgs~Dg~V~IWD  583 (695)
                      ...+|++|.|+++++|.-...          -....+..+....++....+.|++|.|.|.  |-.||+++.||+||||+
T Consensus        73 GqvvA~cS~Drtv~iWEE~~~----------~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYE  142 (361)
T KOG2445|consen   73 GQVVATCSYDRTVSIWEEQEK----------SEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYE  142 (361)
T ss_pred             cceEEEEecCCceeeeeeccc----------ccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEe
Confidence            478999999999999943211          012234567778888999999999999995  66899999999999998


Q ss_pred             CCCC------eEEEEec-------ccCCCeEEEEEcCC---CCEEEEEeCC-----CeEEEEECCCCC---eeEEEEecC
Q 005473          584 TESF------TVKSTLE-------EHTQWITDVRFSPS---LSRLATSSAD-----RTVRVWDTENPD---YSLRTFTGH  639 (695)
Q Consensus       584 l~t~------~~~~~l~-------~H~~~V~~v~~spd---g~~LaTgs~D-----gtIrvWDl~t~~---~~l~~~~gh  639 (695)
                      ...-      .+...+.       .+.....||.|+|.   ..+||.|+.+     +.++||......   ..+.++.+|
T Consensus       143 A~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~  222 (361)
T KOG2445|consen  143 APDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDH  222 (361)
T ss_pred             cCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCC
Confidence            7432      1222222       46678899999984   4578888765     478899876544   235677899


Q ss_pred             CCCeEEEEEecCC---CeEEEEEeCCCcEEEEECCC--------------------CeEEEEEecCCCcEEEEEE
Q 005473          640 STTVMSLDFHPSK---EDLLCSCDNNSEIRYWSINN--------------------GSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       640 ~~~V~sl~fspdg---~~llaSgs~Dg~IriWDl~t--------------------g~~v~~~~~h~~~VtsVaf  691 (695)
                      ...|+.|+|.|+-   -++||+++.|| |+||.++.                    -+.+..+..|.+.|..|.|
T Consensus       223 ~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~w  296 (361)
T KOG2445|consen  223 TDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRW  296 (361)
T ss_pred             CCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEE
Confidence            9999999999973   24789999999 99999973                    1345667799999999998

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.42  E-value=1.9e-11  Score=129.06  Aligned_cols=145  Identities=34%  Similarity=0.553  Sum_probs=123.9

Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCC-EEEEEeCCCeEEE
Q 005473          546 TEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRV  623 (695)
Q Consensus       546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs~-Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~-~LaTgs~DgtIrv  623 (695)
                      .....+..|...|.+++|+++++++++++. |+.+++|++..+..+..+.+|...|.+++|+|++. .+++++.|+.|++
T Consensus       146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~  225 (466)
T COG2319         146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL  225 (466)
T ss_pred             eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence            456777899999999999999999999886 99999999999889999999999999999999987 5555589999999


Q ss_pred             EECCCCCeeEE-EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeE-EEEEecCCCcEEEEEEeCC
Q 005473          624 WDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       624 WDl~t~~~~l~-~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~-v~~~~~h~~~VtsVaf~sP  694 (695)
                      ||...+.. +. .+.+|...+ ...|+|++. ++++++.|+.+++||++.... +..+.+|...|.++.| +|
T Consensus       226 wd~~~~~~-~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~  294 (466)
T COG2319         226 WDLSTGKL-LRSTLSGHSDSV-VSSFSPDGS-LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAF-SP  294 (466)
T ss_pred             EECCCCcE-EeeecCCCCcce-eEeECCCCC-EEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEE-CC
Confidence            99986554 55 688888876 448999984 666999999999999987654 5555788999999999 87

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.42  E-value=3.7e-13  Score=145.80  Aligned_cols=125  Identities=21%  Similarity=0.421  Sum_probs=112.8

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cccCCCeEEEEEcC--CCCEEEEEeCCCeEEEE
Q 005473          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTVRVW  624 (695)
Q Consensus       548 v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l-~~H~~~V~~v~~sp--dg~~LaTgs~DgtIrvW  624 (695)
                      ...+.||++-|+|+.|+.+|.+|++|++|-.+.|||.-..++++.+ .+|...|.++.|-|  +.++++||..|+.|+||
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            3567899999999999999999999999999999999888888777 78999999999999  46788999999999999


Q ss_pred             ECCC---------CCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473          625 DTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (695)
Q Consensus       625 Dl~t---------~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t  672 (695)
                      |+..         .....+.+.+|...|..++-.|++++.|.++++||+||-+|++.
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE  179 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE  179 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence            9985         23345678899999999999999999999999999999999986

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.42  E-value=1.1e-12  Score=138.29  Aligned_cols=138  Identities=25%  Similarity=0.412  Sum_probs=119.2

Q ss_pred             CCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCC---------eEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 005473          555 TSKVESCHFSPDGK-LLATGGHDKKAVLWCTESF---------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (695)
Q Consensus       555 ~~~V~~v~fspdg~-~LaSgs~Dg~V~IWDl~t~---------~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvW  624 (695)
                      ..+|..+.|.++.. .|+||+.|..|+||-+...         +....+..|...|++|+|+|+|.+|++|+++|.|.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            45699999988776 9999999999999977532         2345668899999999999999999999999999999


Q ss_pred             ECC--------C-----C--CeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEE
Q 005473          625 DTE--------N-----P--DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSV  689 (695)
Q Consensus       625 Dl~--------t-----~--~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsV  689 (695)
                      -..        +     .  ....+.+.+|...|..++|+|++. ++++++.|..+++||+..|..+..+..|..-|..+
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv  171 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV  171 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc-eeeeeeccceEEEEEeccceeEeecccccccccee
Confidence            765        2     1  123467788999999999999987 67799999999999999999999999999999999


Q ss_pred             EEeCC
Q 005473          690 RVVQP  694 (695)
Q Consensus       690 af~sP  694 (695)
                      +| .|
T Consensus       172 aw-Dp  175 (434)
T KOG1009|consen  172 AW-DP  175 (434)
T ss_pred             ec-ch
Confidence            99 77

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.41  E-value=2e-12  Score=143.59  Aligned_cols=186  Identities=20%  Similarity=0.286  Sum_probs=139.9

Q ss_pred             cccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCC-----cEEEEeCCCCCCCCCccccccccCCCceeeeE
Q 005473          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDD-----NVESFLSPDDADPRDRVGRSAEVGKGFTFTEF  548 (695)
Q Consensus       474 l~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~-----~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v  548 (695)
                      -.+.+..++.++..++++               +++++++...     .|++|.                   ...+..+
T Consensus       520 KLYGHGyEv~~l~~s~~g---------------nliASaCKS~~~ehAvI~lw~-------------------t~~W~~~  565 (764)
T KOG1063|consen  520 KLYGHGYEVYALAISPTG---------------NLIASACKSSLKEHAVIRLWN-------------------TANWLQV  565 (764)
T ss_pred             HhccCceeEEEEEecCCC---------------CEEeehhhhCCccceEEEEEe-------------------ccchhhh
Confidence            345677788888888777               6677666433     344552                   2244566


Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe----EEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 005473          549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (695)
Q Consensus       549 ~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~----~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvW  624 (695)
                      ..+.+|.-.|+.++|||||++|++++.|.++.+|......    ....++.|+..|.++.|+|++.+|+|+|+|++|+||
T Consensus       566 ~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW  645 (764)
T KOG1063|consen  566 QELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVW  645 (764)
T ss_pred             heecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEE
Confidence            7889999999999999999999999999999999864321    123367899999999999999999999999999999


Q ss_pred             ECCCC--CeeEE-EEecCCCCeEEEEEecC----CCeEEEEEeCCCcEEEEECC------C-Ce-----EEEEEecCCCc
Q 005473          625 DTENP--DYSLR-TFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSIN------N-GS-----CAGVFKNFFES  685 (695)
Q Consensus       625 Dl~t~--~~~l~-~~~gh~~~V~sl~fspd----g~~llaSgs~Dg~IriWDl~------t-g~-----~v~~~~~h~~~  685 (695)
                      .....  +...+ ....+...|+.++|.|-    ...+++.|-..|.|.+|...      + +.     ......+|.+.
T Consensus       646 ~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a  725 (764)
T KOG1063|consen  646 EEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSA  725 (764)
T ss_pred             eccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHh
Confidence            98765  32122 34457889999998763    33488899999999999965      1 11     11223377888


Q ss_pred             EEEEEEeCC
Q 005473          686 FVSVRVVQP  694 (695)
Q Consensus       686 VtsVaf~sP  694 (695)
                      |+.++| .|
T Consensus       726 V~rl~w-~p  733 (764)
T KOG1063|consen  726 VNRLLW-RP  733 (764)
T ss_pred             hheeEe-cc
Confidence            999998 76

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.40  E-value=2.5e-12  Score=133.17  Aligned_cols=166  Identities=16%  Similarity=0.205  Sum_probs=126.4

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEEC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCT  584 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fsp--dg~~LaSgs~Dg~V~IWDl  584 (695)
                      ..++++-..+.|++|+...+                   ..+..+++|...++.+.|..  ....+.+|+.||+|++||+
T Consensus        41 ~~vav~lSngsv~lyd~~tg-------------------~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~  101 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTG-------------------QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDI  101 (376)
T ss_pred             eeEEEEecCCeEEEEeccch-------------------hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEe
Confidence            56788888899999955332                   23455677778888899976  4678999999999999999


Q ss_pred             CCCeEE--EEecccC-CCeEEEEEcCCCCEEEEEe----CCCeEEEEECCCCCeeEE-EEecCCCCeEEEEEecCCCeEE
Q 005473          585 ESFTVK--STLEEHT-QWITDVRFSPSLSRLATSS----ADRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLL  656 (695)
Q Consensus       585 ~t~~~~--~~l~~H~-~~V~~v~~spdg~~LaTgs----~DgtIrvWDl~t~~~~l~-~~~gh~~~V~sl~fspdg~~ll  656 (695)
                      +.....  ..+..|. .+..|++..-.++.+++|.    .|-.|.+||+|.....++ ....|...|++|.|||..+.+|
T Consensus       102 Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlL  181 (376)
T KOG1188|consen  102 RSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLL  181 (376)
T ss_pred             ecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeE
Confidence            876544  3445555 4566777766677888875    377899999998776444 4567999999999999999999


Q ss_pred             EEEeCCCcEEEEECCCCe----EEEEEecCCCcEEEEEEe
Q 005473          657 CSCDNNSEIRYWSINNGS----CAGVFKNFFESFVSVRVV  692 (695)
Q Consensus       657 aSgs~Dg~IriWDl~tg~----~v~~~~~h~~~VtsVaf~  692 (695)
                      ++|+.||.|.+||++...    .+.++ .|...|.++.|+
T Consensus       182 lSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~  220 (376)
T KOG1188|consen  182 LSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWL  220 (376)
T ss_pred             EeecccceEEeeecCCCcchhhHHHhh-cccceeeeeeee
Confidence            999999999999997542    22333 455667777773

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.39  E-value=2e-11  Score=121.57  Aligned_cols=172  Identities=17%  Similarity=0.227  Sum_probs=119.8

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      +++.+|+ ||.|+-|........ ....+.|+.....     ..-...--.|+++...|..+-|+.++.|+.++-||+++
T Consensus        73 ~~Lls~g-dG~V~gw~W~E~~es-~~~K~lwe~~~P~-----~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~  145 (325)
T KOG0649|consen   73 DFLLSGG-DGLVYGWEWNEEEES-LATKRLWEVKIPM-----QVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED  145 (325)
T ss_pred             hheeecc-CceEEEeeehhhhhh-ccchhhhhhcCcc-----ccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecC
Confidence            6777775 599999977544321 1222333222111     00001112488999998877777777899999999999


Q ss_pred             CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec---------C-CCCeEEEEEecCCCeEE
Q 005473          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG---------H-STTVMSLDFHPSKEDLL  656 (695)
Q Consensus       587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~g---------h-~~~V~sl~fspdg~~ll  656 (695)
                      ++..+++++|++.|.++.-......+++|+.||++||||+++.+. +.++..         | ..+|.+++-+.|  +++
T Consensus       146 G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~-v~~ie~yk~~~~lRp~~g~wigala~~ed--Wlv  222 (325)
T KOG0649|consen  146 GRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKH-VSMIEPYKNPNLLRPDWGKWIGALAVNED--WLV  222 (325)
T ss_pred             CEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccce-eEEeccccChhhcCcccCceeEEEeccCc--eEE
Confidence            999999999999999999877678999999999999999999774 555432         2 245777776544  444


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473          657 CSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       657 aSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf  691 (695)
                       +|+ ...+.+|.++..+++.+|. ...+|..+.|
T Consensus       223 -CGg-Gp~lslwhLrsse~t~vfp-ipa~v~~v~F  254 (325)
T KOG0649|consen  223 -CGG-GPKLSLWHLRSSESTCVFP-IPARVHLVDF  254 (325)
T ss_pred             -ecC-CCceeEEeccCCCceEEEe-cccceeEeee
Confidence             443 5689999999887776664 2233455555

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.38  E-value=4e-11  Score=120.03  Aligned_cols=119  Identities=18%  Similarity=0.297  Sum_probs=92.5

Q ss_pred             CCCeEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCC
Q 005473          555 TSKVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENP  629 (695)
Q Consensus       555 ~~~V~~v~fspdg~~LaSg--s~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~D---gtIrvWDl~t~  629 (695)
                      .++|.+++|+|+|+.||+.  ..++.|.|||++ ++.+..+.  ...+..|.|+|+|++|++++.+   |.|.+||+++.
T Consensus        59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~  135 (194)
T PF08662_consen   59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK  135 (194)
T ss_pred             CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            4569999999999986554  457899999997 56666664  5678899999999999998754   66999999964


Q ss_pred             CeeEEEEecCCCCeEEEEEecCCCeEEEEEeC-----CCcEEEEECCCCeEEEEEe
Q 005473          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----NSEIRYWSINNGSCAGVFK  680 (695)
Q Consensus       630 ~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~-----Dg~IriWDl~tg~~v~~~~  680 (695)
                      + ++..+. | ..++.++|+|||++++++.+.     |..++||++. |+.+....
T Consensus       136 ~-~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~  187 (194)
T PF08662_consen  136 K-KISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP  187 (194)
T ss_pred             E-Eeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence            4 355544 3 357899999999977766553     8999999985 77665543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.37  E-value=2.3e-12  Score=139.39  Aligned_cols=163  Identities=18%  Similarity=0.243  Sum_probs=127.1

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      ..++.++.||.+.+..-.                 +   +....+.+|.+.|.|-.|+|||.-|+++++||.|+||.- +
T Consensus        76 d~~~i~s~DGkf~il~k~-----------------~---rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-s  134 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKS-----------------A---RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-S  134 (737)
T ss_pred             ceEEEEcCCceEEEeccc-----------------c---hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-c
Confidence            445566677877776211                 1   223446789999999999999999999999999999984 3


Q ss_pred             CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEE
Q 005473          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (695)
Q Consensus       587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~Ir  666 (695)
                      |-...++.....+|+|++|.|+...++.+. .+.+.|=-+..... +-.++.|.+-|.+++|++..+ ++++|++|-..+
T Consensus       135 GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k-~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfK  211 (737)
T KOG1524|consen  135 GMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSK-IIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFK  211 (737)
T ss_pred             chHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeecccccc-eeEEeccCcEEEEeecCcccc-ceeecCCceeEE
Confidence            444445555678999999999866655543 34566656654333 566788999999999999976 888999999999


Q ss_pred             EEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          667 YWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       667 iWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      |||- -|..+.....|..+|++|+| .|+
T Consensus       212 vWD~-~G~~Lf~S~~~ey~ITSva~-npd  238 (737)
T KOG1524|consen  212 IWDA-QGANLFTSAAEEYAITSVAF-NPE  238 (737)
T ss_pred             eecc-cCcccccCChhccceeeeee-ccc
Confidence            9995 48889999999999999999 986

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.37  E-value=2.6e-11  Score=125.18  Aligned_cols=118  Identities=24%  Similarity=0.455  Sum_probs=103.9

Q ss_pred             CCCCCeEEEEEcCCC----CEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECC
Q 005473          553 ASTSKVESCHFSPDG----KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTE  627 (695)
Q Consensus       553 ~H~~~V~~v~fspdg----~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spd-g~~LaTgs~DgtIrvWDl~  627 (695)
                      .|....+.|+|+-|-    -++|.|+.-|.|+|.|+.++++...+.+|...|..|.++|+ ..+|+++|.|.+||+|+++
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~  166 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ  166 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence            466678889997642    37899999999999999999999999999999999999996 4688999999999999999


Q ss_pred             CCCeeEEEE---ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473          628 NPDYSLRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (695)
Q Consensus       628 t~~~~l~~~---~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t  672 (695)
                      +.. |+..|   .||.+.|.+++|+++|. .|++|+.|..|++|++..
T Consensus       167 ~~~-Cv~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~  212 (385)
T KOG1034|consen  167 TDV-CVAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNV  212 (385)
T ss_pred             CCe-EEEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecCh
Confidence            854 67665   47999999999999998 677999999999999983

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.37  E-value=2.9e-12  Score=141.20  Aligned_cols=159  Identities=17%  Similarity=0.273  Sum_probs=117.1

Q ss_pred             CCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005473          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (695)
Q Consensus       504 ~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWD  583 (695)
                      ..++.++.+-.||.|.+++.....      .+       .....++....|...|..+.|.|....|++++.|.++++||
T Consensus        62 n~eHiLavadE~G~i~l~dt~~~~------fr-------~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wd  128 (720)
T KOG0321|consen   62 NKEHILAVADEDGGIILFDTKSIV------FR-------LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWD  128 (720)
T ss_pred             CccceEEEecCCCceeeecchhhh------cc-------hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeee
Confidence            345889999999999999653221      11       11122455678999999999999667899999999999999


Q ss_pred             CCCCeEEEE--ecccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCe------e--------------------EE
Q 005473          584 TESFTVKST--LEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY------S--------------------LR  634 (695)
Q Consensus       584 l~t~~~~~~--l~~H~~~V~~v~~spd-g~~LaTgs~DgtIrvWDl~t~~~------~--------------------l~  634 (695)
                      +++.+++..  +.||.+.|.+++|+|. ...|++|+.||.|.|||++....      +                    +.
T Consensus       129 vk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~  208 (720)
T KOG0321|consen  129 VKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIR  208 (720)
T ss_pred             eccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccc
Confidence            999998877  8999999999999995 56789999999999999974331      0                    11


Q ss_pred             EEecCCCCeEE---EEEecCCCeEEEEEeC-CCcEEEEECCCCeEE
Q 005473          635 TFTGHSTTVMS---LDFHPSKEDLLCSCDN-NSEIRYWSINNGSCA  676 (695)
Q Consensus       635 ~~~gh~~~V~s---l~fspdg~~llaSgs~-Dg~IriWDl~tg~~v  676 (695)
                      ....|...|.+   +.+.-|.. .|++++. |+.|+|||+++..+.
T Consensus       209 k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~~  253 (720)
T KOG0321|consen  209 KWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYTA  253 (720)
T ss_pred             ccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeecccccc
Confidence            12233333444   44445555 4556665 999999999975443

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.35  E-value=5.3e-12  Score=130.14  Aligned_cols=143  Identities=17%  Similarity=0.293  Sum_probs=113.8

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEC
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCT  584 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg-~~LaSgs~Dg~V~IWDl  584 (695)
                      +.|++.|+.-|.|++.+....                   .....+.+|...|+.+.|.|+. .+|++|+.|..||+||+
T Consensus       105 ~p~la~~G~~GvIrVid~~~~-------------------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI  165 (385)
T KOG1034|consen  105 NPFLAAGGYLGVIRVIDVVSG-------------------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNI  165 (385)
T ss_pred             CeeEEeecceeEEEEEecchh-------------------hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEec
Confidence            456666666677776644322                   4557788999999999999975 59999999999999999


Q ss_pred             CCCeEEEEe---cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe--------------------------eE-E
Q 005473          585 ESFTVKSTL---EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--------------------------SL-R  634 (695)
Q Consensus       585 ~t~~~~~~l---~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~--------------------------~l-~  634 (695)
                      .+..|+..+   ++|.+.|.++.|++++.+|++++.|..|++|++..+..                          +. .
T Consensus       166 ~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fs  245 (385)
T KOG1034|consen  166 QTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFS  245 (385)
T ss_pred             cCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccc
Confidence            999999887   68999999999999999999999999999999984221                          00 1


Q ss_pred             EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 005473          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI  670 (695)
Q Consensus       635 ~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl  670 (695)
                      +-.-|...|-|+.|--  + ++++-+.++.|.+|..
T Consensus       246 t~diHrnyVDCvrw~g--d-~ilSkscenaI~~w~p  278 (385)
T KOG1034|consen  246 TTDIHRNYVDCVRWFG--D-FILSKSCENAIVCWKP  278 (385)
T ss_pred             ccccccchHHHHHHHh--h-heeecccCceEEEEec
Confidence            2234666677777763  3 6668888999999987

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.35  E-value=6.5e-12  Score=134.17  Aligned_cols=147  Identities=22%  Similarity=0.217  Sum_probs=113.2

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      ..+.+.|.||+|++-++...                 .+.++..+......+..+.|+.+...++.+..=|...+||.++
T Consensus       248 s~i~ssSyDGtiR~~D~~~~-----------------i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~  310 (498)
T KOG4328|consen  248 SQIYSSSYDGTIRLQDFEGN-----------------ISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRT  310 (498)
T ss_pred             hheeeeccCceeeeeeecch-----------------hhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeec
Confidence            56788899999999866433                 1223333333344578899988888787887777999999998


Q ss_pred             CeE-EEEecccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCC--e-eEEEEecCCCCeEEEEEecCCCeEEEEEeC
Q 005473          587 FTV-KSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD--Y-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (695)
Q Consensus       587 ~~~-~~~l~~H~~~V~~v~~spd-g~~LaTgs~DgtIrvWDl~t~~--~-~l~~~~gh~~~V~sl~fspdg~~llaSgs~  661 (695)
                      .+. ...++-|...|+.|+++|- ..+|+|+|.|++++|||++.-.  . ++-....|...|.++.|+|++..|+ +.+.
T Consensus       311 ~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~-TT~~  389 (498)
T KOG4328|consen  311 DGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLL-TTCQ  389 (498)
T ss_pred             CCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceE-eecc
Confidence            665 5667789899999999995 5578999999999999998532  2 2334456999999999999988755 6667


Q ss_pred             CCcEEEEECC
Q 005473          662 NSEIRYWSIN  671 (695)
Q Consensus       662 Dg~IriWDl~  671 (695)
                      |..|||||..
T Consensus       390 D~~IRv~dss  399 (498)
T KOG4328|consen  390 DNEIRVFDSS  399 (498)
T ss_pred             CCceEEeecc
Confidence            9999999983

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.34  E-value=1.3e-11  Score=134.91  Aligned_cols=166  Identities=20%  Similarity=0.296  Sum_probs=132.8

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      ..+.+|+.|++|+.|..+...++.+.+-         ......++.||++.|..+++|.....|++|+.||+|++|+...
T Consensus       357 ~~~ysgg~Dg~I~~w~~p~n~dp~ds~d---------p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~  427 (577)
T KOG0642|consen  357 EHCYSGGIDGTIRCWNLPPNQDPDDSYD---------PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTE  427 (577)
T ss_pred             eEEEeeccCceeeeeccCCCCCcccccC---------cchhccceeccccceeeeeecccccceeeecCCceEEeeccCC
Confidence            7889999999999998875444332221         1123356789999999999999999999999999999997643


Q ss_pred             CeEEEEec-----------------------------------------------c-----cCCCeEEEEEcCCCCEEEE
Q 005473          587 FTVKSTLE-----------------------------------------------E-----HTQWITDVRFSPSLSRLAT  614 (695)
Q Consensus       587 ~~~~~~l~-----------------------------------------------~-----H~~~V~~v~~spdg~~LaT  614 (695)
                      ..+ +++.                                               .     ....+.-|.++|...+.++
T Consensus       428 ~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~  506 (577)
T KOG0642|consen  428 ESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFT  506 (577)
T ss_pred             cCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEe
Confidence            222 1110                                               0     0123567788899999999


Q ss_pred             EeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCC
Q 005473          615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFE  684 (695)
Q Consensus       615 gs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~  684 (695)
                      +..|+.|+++|..+++. +.....|...|+++++.|+|. +|++|+.|+.|++|.+....|+..+..|..
T Consensus       507 ~hed~~Ir~~dn~~~~~-l~s~~a~~~svtslai~~ng~-~l~s~s~d~sv~l~kld~k~~~~es~~~r~  574 (577)
T KOG0642|consen  507 AHEDRSIRFFDNKTGKI-LHSMVAHKDSVTSLAIDPNGP-YLMSGSHDGSVRLWKLDVKTCVLESTAHRK  574 (577)
T ss_pred             cccCCceeccccccccc-chheeeccceecceeecCCCc-eEEeecCCceeehhhccchheeeccccccc
Confidence            99999999999999775 888899999999999999998 556999999999999999999998888863

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.34  E-value=1.1e-11  Score=127.62  Aligned_cols=184  Identities=19%  Similarity=0.209  Sum_probs=141.5

Q ss_pred             CCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCe
Q 005473          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV  558 (695)
Q Consensus       479 s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V  558 (695)
                      -.++++..|+.|..               .++.+.....|.+|....                ...+...+++..|...|
T Consensus        10 ~~pitchAwn~drt---------------~iAv~~~~~evhiy~~~~----------------~~~w~~~htls~Hd~~v   58 (361)
T KOG1523|consen   10 LEPITCHAWNSDRT---------------QIAVSPNNHEVHIYSMLG----------------ADLWEPAHTLSEHDKIV   58 (361)
T ss_pred             cCceeeeeecCCCc---------------eEEeccCCceEEEEEecC----------------CCCceeceehhhhCcce
Confidence            35788888888874               456666667777773321                22357789999999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEC-CCC--eEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC---ee
Q 005473          559 ESCHFSPDGKLLATGGHDKKAVLWCT-ESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---YS  632 (695)
Q Consensus       559 ~~v~fspdg~~LaSgs~Dg~V~IWDl-~t~--~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~---~~  632 (695)
                      ++|+|+|..+.|++|+.|...+||.. ..+  ++...+..|...+++|.|+|.++.|++||..+.|.||-++...   .+
T Consensus        59 tgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVs  138 (361)
T KOG1523|consen   59 TGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVS  138 (361)
T ss_pred             eEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehh
Confidence            99999999999999999999999988 333  4555667789999999999999999999999999999876432   11


Q ss_pred             EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC------------------CCeEEEEEecCCCcEEEEEEeCC
Q 005473          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN------------------NGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       633 l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~------------------tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      ...-..+.+.|++++|||++ .++++|+.|+.+|||..-                  -|+.+..+....+.|..+.| +|
T Consensus       139 KhikkPirStv~sldWhpnn-VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~f-s~  216 (361)
T KOG1523|consen  139 KHIKKPIRSTVTSLDWHPNN-VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLF-SP  216 (361)
T ss_pred             hhhCCccccceeeeeccCCc-ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEe-CC
Confidence            22334567889999999995 489999999999999741                  12344555455677888888 76


Q ss_pred             C
Q 005473          695 R  695 (695)
Q Consensus       695 d  695 (695)
                      +
T Consensus       217 s  217 (361)
T KOG1523|consen  217 S  217 (361)
T ss_pred             C
Confidence            4

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.33  E-value=1.6e-11  Score=126.03  Aligned_cols=183  Identities=17%  Similarity=0.172  Sum_probs=132.2

Q ss_pred             ccccCCCCCceEEEEecCCCccccccCCc-------cCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCcee
Q 005473          473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQ-------LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF  545 (695)
Q Consensus       473 ~l~~s~s~~~s~l~~~~dg~~~la~s~~~-------l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~  545 (695)
                      .+..+.+.+..++.|+..|...-.+..+.       +.+..+|++++++...|++|......++           .-...
T Consensus       200 k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG-----------~fqev  268 (420)
T KOG2096|consen  200 KYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDG-----------TFQEV  268 (420)
T ss_pred             eEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCc-----------chhhh
Confidence            34556677888888988765332233332       4556699999999999999965433322           11233


Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------eEEEEe----cccCCCeEEEEEcCCCCEEEE
Q 005473          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-------TVKSTL----EEHTQWITDVRFSPSLSRLAT  614 (695)
Q Consensus       546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~-------~~~~~l----~~H~~~V~~v~~spdg~~LaT  614 (695)
                      ..+..++||...|..++|+++.+.+++.+.||+++|||++-.       +.+++.    ..-.+.-..+.++|+|..|+.
T Consensus       269 ~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~  348 (420)
T KOG2096|consen  269 KRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAV  348 (420)
T ss_pred             hhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEe
Confidence            455678999999999999999999999999999999998521       111111    122344458999999988877


Q ss_pred             EeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEE
Q 005473          615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS  669 (695)
Q Consensus       615 gs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWD  669 (695)
                      +. ..++++|..++++..-..-..|...|.+++|+++|+ ++++|+ |..++++-
T Consensus       349 s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~-~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  349 SF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGK-YIATCG-DRYVRVIR  400 (420)
T ss_pred             ec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCc-EEeeec-ceeeeeec
Confidence            54 567999999987652233456889999999999998 566887 78888876

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.32  E-value=3.3e-13  Score=151.88  Aligned_cols=120  Identities=23%  Similarity=0.464  Sum_probs=111.8

Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 005473          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (695)
Q Consensus       546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWD  625 (695)
                      +.++.+.+|...|+|+.|...|++|++|++|..|+||.+++..|+..+.||.+.|++++.+.+..+++++|.|..|+||.
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR  260 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence            34566789999999999999999999999999999999999999999999999999999999888999999999999999


Q ss_pred             CCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 005473          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (695)
Q Consensus       626 l~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~  671 (695)
                      +.++. ++..+.||++.|++++|+|.-     +.+.||+++|||.+
T Consensus       261 l~~~~-pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  261 LPDGA-PVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             cCCCc-hHHHHhccccceeeeccCccc-----cCCCCCceEecccc
Confidence            99865 589999999999999999863     67789999999988

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.30  E-value=3.1e-11  Score=123.83  Aligned_cols=130  Identities=18%  Similarity=0.278  Sum_probs=107.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 005473          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (695)
Q Consensus       555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~  634 (695)
                      .+.|.+|.|+|.+..|++++.||++++||+........+. |..++.+++|.+ ...+++|+.||.|+++|+.++..  .
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~--~   88 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE--D   88 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcc--e
Confidence            4569999999999999999999999999998875555554 899999999987 46899999999999999998664  6


Q ss_pred             EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEE
Q 005473          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVR  690 (695)
Q Consensus       635 ~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVa  690 (695)
                      .+..|...|.||.+++... .+++|+.|++|++||.+...++.++.... .|.++.
T Consensus        89 ~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~  142 (323)
T KOG1036|consen   89 QIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMD  142 (323)
T ss_pred             eeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccccccccccCc-eEEEEe
Confidence            6777999999999998765 56699999999999999765655554332 555554

>KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only]

Probab=99.29  E-value=2.1e-12  Score=130.09  Aligned_cols=77  Identities=32%  Similarity=0.735  Sum_probs=62.6

Q ss_pred             CcchHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCCccHHHHHHHHHHhhhhhcc----cccccchhhhh
Q 005473            4 NNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTN----EKHSESAASYI   79 (695)
Q Consensus         4 ~~~~~~~~L~~yIydyl~k~~~~~tA~af~~e~~~~~~~~~id~~~~fL~EWW~iFwDif~A~t~----~~~s~~a~~yi   79 (695)
                      ++-.|+++|..||||||++-+..++|+.|+.|..+..+ +.+-.+-+||.+||++|||+|+|...    ..++..++.+.
T Consensus        12 Sd~qArekLa~YvYEYLlhvgaqksaqtflseirwekn-itlge~p~FLhsWWcvFwDLYcAAPeRRd~c~HSsEAKaFh   90 (354)
T KOG4594|consen   12 SDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKN-ITLGEPPGFLHSWWCVFWDLYCAAPERRDTCEHSSEAKAFH   90 (354)
T ss_pred             cchhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhh-hhccCCcchhhhhHHHHHHHhhcCccccCcccccHhhhhhh
Confidence            56679999999999999999999999999999886654 44556679999999999999999443    35555565554


Q ss_pred             HH
Q 005473           80 ES   81 (695)
Q Consensus        80 q~   81 (695)
                      +.
T Consensus        91 dy   92 (354)
T KOG4594|consen   91 DY   92 (354)
T ss_pred             hh
Confidence            43

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.28  E-value=2.4e-11  Score=133.40  Aligned_cols=162  Identities=18%  Similarity=0.231  Sum_probs=121.9

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~  585 (695)
                      +.++++||.|..|++|..+.+....            .. .+...+-+..-.|.|+.|+|...-|+..+..|+|+|||+.
T Consensus        92 D~LLAT~S~D~~VKiW~lp~g~~q~------------LS-ape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~s  158 (1012)
T KOG1445|consen   92 DELLATCSRDEPVKIWKLPRGHSQK------------LS-APEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITDIS  158 (1012)
T ss_pred             hhhhhcccCCCeeEEEecCCCcccc------------cC-CcceeecCCceEEEEeecccCcCceEEeccCceEEEEEcc
Confidence            4789999999999999776442110            00 0111222334468999999976645555557899999999


Q ss_pred             CCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCC-eEEEEEecCCCeEEEEEeC---
Q 005473          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT-VMSLDFHPSKEDLLCSCDN---  661 (695)
Q Consensus       586 t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~-V~sl~fspdg~~llaSgs~---  661 (695)
                      +.+.+..+.+|...|-+..|+.||.+|++++.|+.|+|||.+....++.+..+|.+. -..|.|.-+-..|+.+|-.   
T Consensus       159 tqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~~~R  238 (1012)
T KOG1445|consen  159 TQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERLISTGFTTKR  238 (1012)
T ss_pred             cCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhhhhcccchhh
Confidence            999999999999999999999999999999999999999999988888888999753 2456776555556655542   


Q ss_pred             CCcEEEEECCC-CeEEEEEe
Q 005473          662 NSEIRYWSINN-GSCAGVFK  680 (695)
Q Consensus       662 Dg~IriWDl~t-g~~v~~~~  680 (695)
                      -..|++||.+. +.++.++.
T Consensus       239 ~reV~~~Dtr~f~~p~~tle  258 (1012)
T KOG1445|consen  239 IREVRAYDTRKFGAPVHTLE  258 (1012)
T ss_pred             heeeeeeeccccCCcceeEE
Confidence            35799999986 44555444

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.28  E-value=2.8e-11  Score=133.63  Aligned_cols=187  Identities=14%  Similarity=0.178  Sum_probs=126.5

Q ss_pred             cEEEEeeCCCcEEEEeCCCCC-CCCCccc-cccccCCC------ceeeeEEEecCCCCCeEE---EEEcCCCCEEEEEeC
Q 005473          507 RFVDDGSLDDNVESFLSPDDA-DPRDRVG-RSAEVGKG------FTFTEFQLIPASTSKVES---CHFSPDGKLLATGGH  575 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~-~~~~~~~-~~~d~~~~------~~~~~v~~l~~H~~~V~~---v~fspdg~~LaSgs~  575 (695)
                      ..+++|+.|+.|.+|+..-.. +....+. ++....++      ...+.+...++|...|..   +.+..|...||+++.
T Consensus       158 ~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga  237 (720)
T KOG0321|consen  158 AVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGA  237 (720)
T ss_pred             cceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccC
Confidence            678999999999999875432 1000000 11111111      111223334456666666   777789999999998


Q ss_pred             -CCcEEEEECCCCeEEEE--------eccc---CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-eEEEEecCCCC
Q 005473          576 -DKKAVLWCTESFTVKST--------LEEH---TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTT  642 (695)
Q Consensus       576 -Dg~V~IWDl~t~~~~~~--------l~~H---~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~-~l~~~~gh~~~  642 (695)
                       |+.|+|||++...+...        +..|   ...++++.....|.+|+..|.|+.|++||+..-.. ++..+.++-..
T Consensus       238 ~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~  317 (720)
T KOG0321|consen  238 ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNS  317 (720)
T ss_pred             CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccc
Confidence             99999999986543222        2223   34577888888889998888999999999986442 34455554322


Q ss_pred             e--EEEEEecCCCeEEEEEeCCCcEEEEECCCCe-EEEEEecCCCcEEEEEEeCCC
Q 005473          643 V--MSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       643 V--~sl~fspdg~~llaSgs~Dg~IriWDl~tg~-~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      -  ..-..+||+. .+++|+.|...++|.+.+.+ ....+.+|+-.|++|+| .|.
T Consensus       318 sf~vks~lSpd~~-~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w-~pS  371 (720)
T KOG0321|consen  318 SFYVKSELSPDDC-SLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRW-LPS  371 (720)
T ss_pred             eeeeeeecCCCCc-eEeccCCCcceeeeeecCccCChhhhhCcceEEEEEee-ccc
Confidence            1  1224688887 56699999999999998754 56667799999999999 763

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.27  E-value=2.5e-10  Score=127.12  Aligned_cols=159  Identities=16%  Similarity=0.258  Sum_probs=123.7

Q ss_pred             CccccccccCCCceeeeEEEecCC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCC
Q 005473          531 DRVGRSAEVGKGFTFTEFQLIPAS-TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL  609 (695)
Q Consensus       531 ~~~~~~~d~~~~~~~~~v~~l~~H-~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg  609 (695)
                      +...++|....++....  .+.++ ...|.+++|++ +..|++.+.+|+|.-||+.+++.+..+....+.|++++.+|.+
T Consensus        46 ~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~  122 (691)
T KOG2048|consen   46 DGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPEN  122 (691)
T ss_pred             CCcEEEEccCCCceeeE--EEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCcc
Confidence            34557777776654443  34444 45799999995 4457788899999999999999999999899999999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCCeeE-EEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe--------
Q 005473          610 SRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--------  680 (695)
Q Consensus       610 ~~LaTgs~DgtIrvWDl~t~~~~l-~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~--------  680 (695)
                      ..++.||+||.++.++...++... +.+..-++.|.+|+|+|++.. +++|+.||.|++||+.++..+..+.        
T Consensus       123 ~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~-i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k  201 (691)
T KOG2048|consen  123 TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK-IAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSK  201 (691)
T ss_pred             ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccE-EEecccCceEEEEEcCCCceEEEeeeccccccc
Confidence            999999999988888888765422 334445689999999999874 5599999999999999987776322        


Q ss_pred             cCCCcEEEEEEeC
Q 005473          681 NFFESFVSVRVVQ  693 (695)
Q Consensus       681 ~h~~~VtsVaf~s  693 (695)
                      .-..-|++|.|+.
T Consensus       202 ~~~~iVWSv~~Lr  214 (691)
T KOG2048|consen  202 REPTIVWSVLFLR  214 (691)
T ss_pred             CCceEEEEEEEee
Confidence            1223567776643

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.26  E-value=9.3e-11  Score=133.12  Aligned_cols=193  Identities=17%  Similarity=0.206  Sum_probs=140.4

Q ss_pred             cccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecC
Q 005473          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA  553 (695)
Q Consensus       474 l~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~  553 (695)
                      ..+.....+.++.|++...              .+++.|+.+|.|.+|+.....+..         ..    ..-.....
T Consensus       237 ~~~~~~s~v~~~~f~p~~p--------------~ll~gG~y~GqV~lWD~~~~~~~~---------~s----~ls~~~~s  289 (555)
T KOG1587|consen  237 LVLESPSEVTCLKFCPFDP--------------NLLAGGCYNGQVVLWDLRKGSDTP---------PS----GLSALEVS  289 (555)
T ss_pred             EEEecCCceeEEEeccCCc--------------ceEEeeccCceEEEEEccCCCCCC---------Cc----cccccccc
Confidence            3444556777777777554              889999999999999876553211         00    11122346


Q ss_pred             CCCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCC---------------------------------------------
Q 005473          554 STSKVESCHFSPDG--KLLATGGHDKKAVLWCTES---------------------------------------------  586 (695)
Q Consensus       554 H~~~V~~v~fspdg--~~LaSgs~Dg~V~IWDl~t---------------------------------------------  586 (695)
                      |..+|+.+.|..+-  .-|++++.||.|+.|+++.                                             
T Consensus       290 h~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~  369 (555)
T KOG1587|consen  290 HSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEE  369 (555)
T ss_pred             CCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCC
Confidence            89999999996644  4499999999999998742                                             


Q ss_pred             CeE------------------EEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEE
Q 005473          587 FTV------------------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF  648 (695)
Q Consensus       587 ~~~------------------~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~f  648 (695)
                      |..                  ...+..|.+.|+++.++|=+..++..+.|.+|+||.......++..+..+...|++++|
T Consensus       370 G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaW  449 (555)
T KOG1587|consen  370 GKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAW  449 (555)
T ss_pred             cEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEE
Confidence            110                  01122467889999999976666555559999999988445568888888888999999


Q ss_pred             ecCCCeEEEEEeCCCcEEEEECCC--CeEEEEEecCCCcEEEEEEeCC
Q 005473          649 HPSKEDLLCSCDNNSEIRYWSINN--GSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       649 spdg~~llaSgs~Dg~IriWDl~t--g~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      +|..+.+|+++..||.|.|||+..  ..++.+.+.+....+.+.| ++
T Consensus       450 SptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~-s~  496 (555)
T KOG1587|consen  450 SPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRW-SP  496 (555)
T ss_pred             cCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeec-CC
Confidence            999999999999999999999964  4566666656555555655 54

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.25  E-value=1.9e-10  Score=130.45  Aligned_cols=165  Identities=14%  Similarity=0.212  Sum_probs=141.6

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      +-++.|+.+|.+.+|++..+                   +.++++.++.+.|++|.-+|--..+|.|..+|+|.|++++.
T Consensus       173 NKIvvGs~~G~lql~Nvrt~-------------------K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~  233 (910)
T KOG1539|consen  173 NKIVVGSSQGRLQLWNVRTG-------------------KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKF  233 (910)
T ss_pred             eeEEEeecCCcEEEEEeccC-------------------cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEccc
Confidence            56788999999999976544                   57889999999999999999999999999999999999999


Q ss_pred             CeEEEEecccCCCeEEEEEcCCCCE-EEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcE
Q 005473          587 FTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (695)
Q Consensus       587 ~~~~~~l~~H~~~V~~v~~spdg~~-LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~I  665 (695)
                      .+.+.+++...+.|+.++|..||.. +++|+..|.+.+||++..+..-.+...|.+.|..+.|.|..+ ++++.+.|..+
T Consensus       234 dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSl  312 (910)
T KOG1539|consen  234 DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP-VLVTAGADNSL  312 (910)
T ss_pred             CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc-eEeeccCCCce
Confidence            9999999855699999999999875 577777899999999987664456668999999999999876 77799999999


Q ss_pred             EEEECCCC----eEEEEEecCCCcEEEEEE
Q 005473          666 RYWSINNG----SCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       666 riWDl~tg----~~v~~~~~h~~~VtsVaf  691 (695)
                      ++|=.+++    +.++.-.||+.|..+|+|
T Consensus       313 k~~vfD~~dg~pR~LR~R~GHs~Pp~~irf  342 (910)
T KOG1539|consen  313 KVWVFDSGDGVPRLLRSRGGHSAPPSCIRF  342 (910)
T ss_pred             eEEEeeCCCCcchheeeccCCCCCchheee
Confidence            98866643    456666699999999998

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.25  E-value=3.7e-11  Score=130.47  Aligned_cols=162  Identities=19%  Similarity=0.264  Sum_probs=128.8

Q ss_pred             cCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEe-cCC
Q 005473          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PAS  554 (695)
Q Consensus       476 ~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l-~~H  554 (695)
                      ..+..-+.++.|..+|               .|+++||.|-.+-+|+..                   ..+.++.+ .+|
T Consensus        47 ~GH~GCVN~LeWn~dG---------------~lL~SGSDD~r~ivWd~~-------------------~~KllhsI~TgH   92 (758)
T KOG1310|consen   47 TGHTGCVNCLEWNADG---------------ELLASGSDDTRLIVWDPF-------------------EYKLLHSISTGH   92 (758)
T ss_pred             ccccceecceeecCCC---------------CEEeecCCcceEEeecch-------------------hcceeeeeeccc
Confidence            3455677889999888               799999999999999542                   22333333 589


Q ss_pred             CCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCC----------CeEEEEecccCCCeEEEEEcCCC-CEEEEEeCCCeE
Q 005473          555 TSKVESCHFSP--DGKLLATGGHDKKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTV  621 (695)
Q Consensus       555 ~~~V~~v~fsp--dg~~LaSgs~Dg~V~IWDl~t----------~~~~~~l~~H~~~V~~v~~spdg-~~LaTgs~DgtI  621 (695)
                      +.-|.|+.|-|  +.+.+++|..|+.|+|||+..          .+..+.+..|...|..|+..|++ ..+.+++.||+|
T Consensus        93 taNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGti  172 (758)
T KOG1310|consen   93 TANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTI  172 (758)
T ss_pred             ccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcce
Confidence            99999999988  466899999999999999974          23345566799999999999987 678999999999


Q ss_pred             EEEECCCCCeeEEEEecC---------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 005473          622 RVWDTENPDYSLRTFTGH---------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (695)
Q Consensus       622 rvWDl~t~~~~l~~~~gh---------~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~  671 (695)
                      +-+|++.+..|-.....|         --...|+.++|..+++|+.|+.|-..++||.+
T Consensus       173 rQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  173 RQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             eeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence            999999865543222222         13467899999999999999999999999953

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.24  E-value=4.3e-11  Score=132.10  Aligned_cols=174  Identities=19%  Similarity=0.296  Sum_probs=132.7

Q ss_pred             CCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 005473          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (695)
Q Consensus       477 s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~  556 (695)
                      .++..+..+.|.|||.              .++..  .+..+.+|+..++                   ..+.++++|++
T Consensus        10 ~~~hci~d~afkPDGs--------------qL~lA--Ag~rlliyD~ndG-------------------~llqtLKgHKD   54 (1081)
T KOG1538|consen   10 KAEHCINDIAFKPDGT--------------QLILA--AGSRLLVYDTSDG-------------------TLLQPLKGHKD   54 (1081)
T ss_pred             ccccchheeEECCCCc--------------eEEEe--cCCEEEEEeCCCc-------------------ccccccccccc
Confidence            3455788899999996              44443  3467788876655                   35678899999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE
Q 005473          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l-~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~  635 (695)
                      .|+||+|+.||+.+|||+.|+.|.||.-.-   ...+ ..|++.|-|+.|+|-...|+|++-. ..-+|..+....  ..
T Consensus        55 tVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V--~K  128 (1081)
T KOG1538|consen   55 TVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSV--SK  128 (1081)
T ss_pred             eEEEEEEccCCceeccCCCceeEEEecccc---cceeeeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhH--Hh
Confidence            999999999999999999999999998542   2223 3599999999999998899998754 467898875332  21


Q ss_pred             EecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe---cCCCcEEEEEEeCCC
Q 005473          636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---NFFESFVSVRVVQPR  695 (695)
Q Consensus       636 ~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~---~h~~~VtsVaf~sPd  695 (695)
                      .. ....|.+++|..||. +++.|-.||+|.|-+-. |+.-..+.   |..++|++|+| +|+
T Consensus       129 ~k-ss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~-~p~  187 (1081)
T KOG1538|consen  129 HK-SSSRIICCSWTNDGQ-YLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICW-NPS  187 (1081)
T ss_pred             hh-hheeEEEeeecCCCc-EEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEe-cCC
Confidence            11 235789999999998 67799999999999744 44443343   56789999999 884

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=4.1e-11  Score=131.40  Aligned_cols=140  Identities=16%  Similarity=0.240  Sum_probs=121.3

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 005473          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (695)
Q Consensus       553 ~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~  632 (695)
                      -..+.|.++.|+|...+|++++. ..|+|||+...+.++.+......|..++.+|.|..|+.|+.|+.+.+||++-...+
T Consensus       564 kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskP  642 (733)
T KOG0650|consen  564 KSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKP  642 (733)
T ss_pred             hcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcch
Confidence            34556999999999999998884 67999999888888888777889999999999999999999999999999987778


Q ss_pred             EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC------C---CeEEEEEecCCCc----EEEEEEeCCC
Q 005473          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN------N---GSCAGVFKNFFES----FVSVRVVQPR  695 (695)
Q Consensus       633 l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~------t---g~~v~~~~~h~~~----VtsVaf~sPd  695 (695)
                      .+++..|...|++|+||+.-+ |||+|+.||+|.||.-+      .   --++..+.+|.-.    |..+.| ||.
T Consensus       643 yk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~w-HP~  716 (733)
T KOG0650|consen  643 YKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIW-HPR  716 (733)
T ss_pred             hHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecc-cCC
Confidence            899999999999999999877 89999999999999643      1   2456778888755    899999 995

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.20  E-value=5.6e-10  Score=119.64  Aligned_cols=137  Identities=19%  Similarity=0.277  Sum_probs=110.0

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCe--EEEEEcCCCCEEEEEeCCCeEEEEECCC-----
Q 005473          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI--TDVRFSPSLSRLATSSADRTVRVWDTEN-----  628 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V--~~v~~spdg~~LaTgs~DgtIrvWDl~t-----  628 (695)
                      +.|..++|+.|++.|++++.+|.|++||++...+++.+.. .+.|  +++|.++++.+||+|+..|.|-|||..+     
T Consensus       345 G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~  423 (514)
T KOG2055|consen  345 GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAST  423 (514)
T ss_pred             cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccC
Confidence            4578899999999999999999999999999999988864 3333  4667778999999999999999999653     


Q ss_pred             CCeeEEEEecCCCCeEEEEEecCCCeEEEEEe--CCCcEEEEECCCCeEEEEEe---cCCCcEEEEEEeCCC
Q 005473          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFK---NFFESFVSVRVVQPR  695 (695)
Q Consensus       629 ~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs--~Dg~IriWDl~tg~~v~~~~---~h~~~VtsVaf~sPd  695 (695)
                      ...+++++......|+++.|++|.. |+|-|+  .+..+|+-.+.+-..-..|.   ..-+.|+||+| +|+
T Consensus       424 ~PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aF-SP~  493 (514)
T KOG2055|consen  424 NPKPIKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAF-SPN  493 (514)
T ss_pred             CCCchhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEe-cCC
Confidence            2235777777788999999999987 665555  56789999988766656565   33467899999 994

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.19  E-value=2.8e-10  Score=114.66  Aligned_cols=141  Identities=19%  Similarity=0.261  Sum_probs=110.6

Q ss_pred             CCCCCeEEEEEcCC-CC--EEEEEeCCCcEEEEECCCC----------eEEEEecccCCCeEEEEEcCCCCEEEEEeCCC
Q 005473          553 ASTSKVESCHFSPD-GK--LLATGGHDKKAVLWCTESF----------TVKSTLEEHTQWITDVRFSPSLSRLATSSADR  619 (695)
Q Consensus       553 ~H~~~V~~v~fspd-g~--~LaSgs~Dg~V~IWDl~t~----------~~~~~l~~H~~~V~~v~~spdg~~LaTgs~Dg  619 (695)
                      +..+.|.|..|..+ ++  +++.|-++|.|.+||+.++          +.+.....|..+|.++.|.+....=++|+.+.
T Consensus       148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~d  227 (323)
T KOG0322|consen  148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADD  227 (323)
T ss_pred             cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccc
Confidence            45677888887543 33  4566667999999999987          33334457999999999988656668888888


Q ss_pred             eEEEEECCCCC--eeEE-EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          620 TVRVWDTENPD--YSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       620 tIrvWDl~t~~--~~l~-~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      .+..|++....  ..+. +..-..-.|..+.+.||++ ++|+++.|+.||||..++..++.+++-|++.|.+|+| +|+
T Consensus       228 kl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAf-spd  304 (323)
T KOG0322|consen  228 KLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAF-SPD  304 (323)
T ss_pred             cceeeeeccccCcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEe-CCC
Confidence            99999986532  2221 1121224588899999988 8999999999999999999999999999999999999 996

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.19  E-value=7.3e-10  Score=116.22  Aligned_cols=119  Identities=22%  Similarity=0.324  Sum_probs=99.3

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCe-EEEEECCCC
Q 005473          553 ASTSKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT-VRVWDTENP  629 (695)
Q Consensus       553 ~H~~~V~~v~fspdg~~LaSgs--~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~Dgt-IrvWDl~t~  629 (695)
                      .+...+.++.+++.+.+||.-+  ..|.|.|||+.+.+.+..+..|++.|-|++|+++|.+|||+|+.|+ ||||++.++
T Consensus       127 ~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G  206 (391)
T KOG2110|consen  127 PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG  206 (391)
T ss_pred             CCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc
Confidence            4455577777777888888643  3589999999999999999999999999999999999999999887 899999987


Q ss_pred             CeeEEEEecCC--CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 005473          630 DYSLRTFTGHS--TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG  673 (695)
Q Consensus       630 ~~~l~~~~gh~--~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg  673 (695)
                      .. +..|+.-.  ..|.+++|+|++. +|++.+..++|+||.+.+-
T Consensus       207 ~k-l~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  207 QK-LYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             cE-eeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEeccc
Confidence            75 66665332  3578999999998 6667777899999998753

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.18  E-value=9.1e-11  Score=118.13  Aligned_cols=153  Identities=19%  Similarity=0.282  Sum_probs=118.8

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      -+++.|-.++.|.+|+...+    +.+.....     .++.+..+..|..+|.++.|.+....=++|+.+..+..|.+..
T Consensus       166 ~lllaGyEsghvv~wd~S~~----~~~~~~~~-----~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~  236 (323)
T KOG0322|consen  166 FLLLAGYESGHVVIWDLSTG----DKIIQLPQ-----SSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNH  236 (323)
T ss_pred             EEEEEeccCCeEEEEEccCC----ceeecccc-----ccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecc
Confidence            45667778999999988655    22222111     2234455678999999999988666667888888899998753


Q ss_pred             C--eE--EEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC
Q 005473          587 F--TV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (695)
Q Consensus       587 ~--~~--~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D  662 (695)
                      .  .+  ...++-..-.|..++..||++.+||++.|+.||||..++.. ++..+.-|.+.|.+++|+|+.+ ++|+++.|
T Consensus       237 s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~-pLAVLkyHsagvn~vAfspd~~-lmAaaskD  314 (323)
T KOG0322|consen  237 STGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN-PLAVLKYHSAGVNAVAFSPDCE-LMAAASKD  314 (323)
T ss_pred             ccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC-chhhhhhhhcceeEEEeCCCCc-hhhhccCC
Confidence            2  21  12222234568899999999999999999999999999976 5899999999999999999965 89999999


Q ss_pred             CcEEEEEC
Q 005473          663 SEIRYWSI  670 (695)
Q Consensus       663 g~IriWDl  670 (695)
                      +.|.+|++
T Consensus       315 ~rISLWkL  322 (323)
T KOG0322|consen  315 ARISLWKL  322 (323)
T ss_pred             ceEEeeec
Confidence            99999986

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.16  E-value=1.9e-09  Score=112.70  Aligned_cols=168  Identities=15%  Similarity=0.219  Sum_probs=118.0

Q ss_pred             CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 005473          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (695)
Q Consensus       478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~  557 (695)
                      ..+.++++.|.|-+.              .-++.|+. .-|++|....... ..+..+..    +.-...+....+| .+
T Consensus       139 sQrnvtclawRPlsa--------------selavgCr-~gIciW~~s~tln-~~r~~~~~----s~~~~qvl~~pgh-~p  197 (445)
T KOG2139|consen  139 SQRNVTCLAWRPLSA--------------SELAVGCR-AGICIWSDSRTLN-ANRNIRMM----STHHLQVLQDPGH-NP  197 (445)
T ss_pred             hhcceeEEEeccCCc--------------ceeeeeec-ceeEEEEcCcccc-cccccccc----cccchhheeCCCC-ce
Confidence            446888999998765              23344433 5678884422110 00111111    1111223344566 67


Q ss_pred             eEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 005473          558 VESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~-Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~  636 (695)
                      |+++.|++||..+++++. |..|.|||.+++.++....--.+.+.-+.|+||+.+|+.+..|+..+||.......+.+..
T Consensus       198 Vtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~  277 (445)
T KOG2139|consen  198 VTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI  277 (445)
T ss_pred             eeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceeccee
Confidence            999999999999999886 6889999999988776654446789999999999999999999999999766555545555


Q ss_pred             ecCCCCeEEEEEecCCCeEEEEEeCCCcEEE
Q 005473          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY  667 (695)
Q Consensus       637 ~gh~~~V~sl~fspdg~~llaSgs~Dg~Iri  667 (695)
                      .+ .+.|...+|+|+|..+|++++....|+-
T Consensus       278 lg-sgrvqtacWspcGsfLLf~~sgsp~lys  307 (445)
T KOG2139|consen  278 LG-SGRVQTACWSPCGSFLLFACSGSPRLYS  307 (445)
T ss_pred             cc-CCceeeeeecCCCCEEEEEEcCCceEEE
Confidence            54 3589999999999999988876554443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.15  E-value=5.1e-10  Score=125.41  Aligned_cols=137  Identities=10%  Similarity=0.051  Sum_probs=98.6

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCC-eEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 005473          550 LIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (695)
Q Consensus       550 ~l~~H~~~V~~v~fspdg~~LaSgs-~Dg~V~IWDl~t~-~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~  627 (695)
                      .+..|...+.++.|+|||+.|+.++ .++.+.||+++.. .....+ ++.+  .++.|+|+|+.|+.++.++ +.+||+.
T Consensus       286 ~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~  361 (429)
T PRK01742        286 QLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLT  361 (429)
T ss_pred             eeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECC
Confidence            3455666788999999999776555 5788888877532 222233 4444  5678999999998887765 5569998


Q ss_pred             CCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC--CCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI--NNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       628 t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl--~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ++...  .+..+ ....++.|+|+|..++ +++.++.+++|++  .+|.++..+.+|.+.|..++| +|.
T Consensus       362 ~g~~~--~lt~~-~~~~~~~~sPdG~~i~-~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~w-sp~  426 (429)
T PRK01742        362 SGSTE--VLSST-FLDESPSISPNGIMII-YSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAW-SPY  426 (429)
T ss_pred             CCCeE--EecCC-CCCCCceECCCCCEEE-EEEcCCCceEEEEEECCCCceEEccCCCCCCCCccc-CCC
Confidence            87642  22222 1346788999998555 5566888888876  368899999999988999999 983

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.15  E-value=2.6e-09  Score=115.50  Aligned_cols=137  Identities=19%  Similarity=0.197  Sum_probs=111.7

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 005473          551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (695)
Q Consensus       551 l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~  630 (695)
                      ..+|.+....++.+|+...+++++.|+.|+||+  ..+++.+.. -..++.|+.|+|.| .++.|...|...|.|+.+..
T Consensus       364 v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~  439 (626)
T KOG2106|consen  364 VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD  439 (626)
T ss_pred             EEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccce
Confidence            457888999999999999999999999999999  455555443 35688999999998 99999999999999999844


Q ss_pred             eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-CeEE-EEEecCCCcEEEEEEeCCC
Q 005473          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCA-GVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       631 ~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t-g~~v-~~~~~h~~~VtsVaf~sPd  695 (695)
                       .+..-.. ...+++|.|+|+|. +||.|+.|+.|+||-+.. |... +.-+.|..+|+.+.| ++|
T Consensus       440 -lv~~~~d-~~~ls~v~ysp~G~-~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDw-S~D  502 (626)
T KOG2106|consen  440 -LVTIHTD-NEQLSVVRYSPDGA-FLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDW-SSD  502 (626)
T ss_pred             -eEEEEec-CCceEEEEEcCCCC-EEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeee-cCC
Confidence             3444444 78899999999998 788999999999999864 3333 333344489999999 875

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.15  E-value=3.9e-10  Score=118.32  Aligned_cols=144  Identities=18%  Similarity=0.238  Sum_probs=112.2

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC------CeEEEEec-ccCCCeEEEEEcCCCCEEEEEeCCCe
Q 005473          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------FTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRT  620 (695)
Q Consensus       548 v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t------~~~~~~l~-~H~~~V~~v~~spdg~~LaTgs~Dgt  620 (695)
                      .+.+.+|.+-|+++.|+.++++|++|+.|..++||+++.      .+++.... .|.+.|.|++|....++|++|..+++
T Consensus        49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~  128 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT  128 (609)
T ss_pred             hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence            345679999999999999999999999999999999853      35555443 35589999999999999999999999


Q ss_pred             EEEEECCCCCeeEEEEec--CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe-EEE--EEecCCCcEEEEEEeCC
Q 005473          621 VRVWDTENPDYSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAG--VFKNFFESFVSVRVVQP  694 (695)
Q Consensus       621 IrvWDl~t~~~~l~~~~g--h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~-~v~--~~~~h~~~VtsVaf~sP  694 (695)
                      |.+-|+.+... +.++..  ..+.|+.+..+|... +|++.+.++.|.|||++... .+.  ..-.......++.| ||
T Consensus       129 VI~HDiEt~qs-i~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F-~P  204 (609)
T KOG4227|consen  129 VIKHDIETKQS-IYVANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEF-HP  204 (609)
T ss_pred             eEeeeccccee-eeeecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeee-cC
Confidence            99999998553 555542  235899999999955 77788999999999998643 221  11122344567777 77

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.15  E-value=9e-10  Score=121.09  Aligned_cols=151  Identities=17%  Similarity=0.216  Sum_probs=115.0

Q ss_pred             CceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCC--EEEEEeCCC
Q 005473          542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADR  619 (695)
Q Consensus       542 ~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~--~LaTgs~Dg  619 (695)
                      .+...+...+++|++.|.||...|.|.+|++|+.||+|+||.+.++.|++++.- .+.|.||+|+|.+.  .||++- +.
T Consensus       387 PFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~-~~  464 (733)
T KOG0650|consen  387 PFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAV-GE  464 (733)
T ss_pred             CCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEe-cC
Confidence            355566777899999999999999999999999999999999999999998863 66899999999654  344443 33


Q ss_pred             eEEEEECCCC------------------------------------CeeEEEEecCCCCeEEEEEecCCCeEEEEEeC--
Q 005473          620 TVRVWDTENP------------------------------------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN--  661 (695)
Q Consensus       620 tIrvWDl~t~------------------------------------~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~--  661 (695)
                      ++.|-+..-+                                    ..-+.....|...|..|.||..|.+|.+++..  
T Consensus       465 ~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~  544 (733)
T KOG0650|consen  465 CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG  544 (733)
T ss_pred             ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence            3544443211                                    01123444678889999999999966554443  


Q ss_pred             CCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          662 NSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       662 Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ...|.|.++.......-|..-.+.|.++.| ||.
T Consensus       545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~F-HPs  577 (733)
T KOG0650|consen  545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKF-HPS  577 (733)
T ss_pred             cceEEEEecccccccCchhhcCCceeEEEe-cCC
Confidence            356999999887777777666778899999 984

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.15  E-value=1.7e-09  Score=116.87  Aligned_cols=158  Identities=23%  Similarity=0.313  Sum_probs=121.1

Q ss_pred             EEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 005473          509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT  588 (695)
Q Consensus       509 lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~  588 (695)
                      +++|..+|+|.+|...                ..   +..+....|.+.|.|++.-.+|.+|- |+.|.+|..||-. .+
T Consensus       260 viTgDS~G~i~Iw~~~----------------~~---~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~-y~  318 (626)
T KOG2106|consen  260 VITGDSGGNILIWSKG----------------TN---RISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDN-YR  318 (626)
T ss_pred             EEeecCCceEEEEeCC----------------Cc---eEEeEeeecCCceEEEEEecCccEee-cCccceEEecccc-cc
Confidence            5788888999999431                11   22333449999999999999998665 9999999999831 00


Q ss_pred             E------------E-----------------------------EEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 005473          589 V------------K-----------------------------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (695)
Q Consensus       589 ~------------~-----------------------------~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~  627 (695)
                      .            +                             .+..+|....+.++.+|+...++|++.|+.|++|+ +
T Consensus       319 k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~  397 (626)
T KOG2106|consen  319 KLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D  397 (626)
T ss_pred             ccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-C
Confidence            0            0                             11236888889999999999999999999999999 2


Q ss_pred             CCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       628 t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                        ..++.+.. ...++.|++|+|.|  .++.|...|...+.|+.+...+...+. ..++++|+| +|+
T Consensus       398 --~k~~wt~~-~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~y-sp~  458 (626)
T KOG2106|consen  398 --HKLEWTKI-IEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRY-SPD  458 (626)
T ss_pred             --CceeEEEE-ecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEec-CCceEEEEE-cCC
Confidence              22233322 34679999999998  677999999999999999666666555 899999999 986

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.13  E-value=2.1e-09  Score=109.88  Aligned_cols=136  Identities=17%  Similarity=0.158  Sum_probs=113.0

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE--EecccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeE
Q 005473          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSL  633 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~--~l~~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWDl~t~~~~l  633 (695)
                      ...++.|++.+..++++..+|.+.+-+........  .+++|...++...|+. +.+++++|++|+.+..||+|.++.++
T Consensus       123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i  202 (339)
T KOG0280|consen  123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI  202 (339)
T ss_pred             eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence            35688999999999999999999966655554444  7899999999999976 45789999999999999999665545


Q ss_pred             EE-EecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-CeEEEEEecCCCcEEEEEEeCC
Q 005473          634 RT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       634 ~~-~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t-g~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      .. ...|...|+++.-+|..+.++++|+.|..|++||.|+ ++++..-+. .+.|+.|.+ ||
T Consensus       203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GGVWRi~~-~p  263 (339)
T KOG0280|consen  203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-GGGVWRIKH-HP  263 (339)
T ss_pred             eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc-ccceEEEEe-cc
Confidence            44 6678899999999998888999999999999999995 677766543 388999999 88

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.13  E-value=6.8e-10  Score=116.55  Aligned_cols=155  Identities=14%  Similarity=0.135  Sum_probs=122.8

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~-~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl  584 (695)
                      ++|+++|+.|..+++|.......             ..+.+++.... .|...|.|++|....++|++|+.+++|.+.|+
T Consensus        68 ~~~L~SGGDD~~~~~W~~de~~~-------------~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDi  134 (609)
T KOG4227|consen   68 DRFLASGGDDMHGRVWNVDELMV-------------RKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDI  134 (609)
T ss_pred             CeEEeecCCcceeeeechHHHHh-------------hcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeec
Confidence            49999999999999995532210             11113333333 35688999999999999999999999999999


Q ss_pred             CCCeEEEEecc--cCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE--EEEecCCCCeEEEEEecCCCeEEEEEe
Q 005473          585 ESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL--RTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (695)
Q Consensus       585 ~t~~~~~~l~~--H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l--~~~~gh~~~V~sl~fspdg~~llaSgs  660 (695)
                      ++.+.+.++..  ..+.|+.+..+|..+.|++.+.+|.|.+||.+....++  ...........++.|+|..+.||++.+
T Consensus       135 Et~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~  214 (609)
T KOG4227|consen  135 ETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNS  214 (609)
T ss_pred             ccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEecc
Confidence            99888877642  34699999999999999999999999999998754222  233334456788999999999999999


Q ss_pred             CCCcEEEEECCCC
Q 005473          661 NNSEIRYWSINNG  673 (695)
Q Consensus       661 ~Dg~IriWDl~tg  673 (695)
                      ..+-+-+||++..
T Consensus       215 ~~~G~~~~D~R~~  227 (609)
T KOG4227|consen  215 ETGGPNVFDRRMQ  227 (609)
T ss_pred             ccCCCCceeeccc
Confidence            9999999999853

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.13  E-value=9.1e-10  Score=127.31  Aligned_cols=136  Identities=17%  Similarity=0.250  Sum_probs=103.3

Q ss_pred             CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCe---EEEEecccCCC--eEEEEEcCCCC-EEEEEeCCCeEEEEECC
Q 005473          555 TSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQW--ITDVRFSPSLS-RLATSSADRTVRVWDTE  627 (695)
Q Consensus       555 ~~~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~t~~---~~~~l~~H~~~--V~~v~~spdg~-~LaTgs~DgtIrvWDl~  627 (695)
                      ...|+++.-+. .|+.|+.|..||.|++||.+.-.   .+...+.|...  |..+.+.+.|- .|++|+.||.|++||++
T Consensus      1208 ~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1208 STLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLR 1287 (1387)
T ss_pred             CccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecc
Confidence            34466665543 46899999999999999987533   56778889888  99999988543 59999999999999999


Q ss_pred             CC-CeeEEEEecCC--C-CeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecC-------CCcEEEEEEeCC
Q 005473          628 NP-DYSLRTFTGHS--T-TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF-------FESFVSVRVVQP  694 (695)
Q Consensus       628 t~-~~~l~~~~gh~--~-~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h-------~~~VtsVaf~sP  694 (695)
                      .. +....+...|-  + .++++..|++.+ ++|+|+. +.|.||++. |+.+..++.+       .+.+.|++| ||
T Consensus      1288 ~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~F-HP 1361 (1387)
T KOG1517|consen 1288 MSSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAF-HP 1361 (1387)
T ss_pred             cCcccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeee-cc
Confidence            73 33233344443  3 589999999977 8888887 999999986 5555554422       467799999 98

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.12  E-value=2.5e-09  Score=107.12  Aligned_cols=130  Identities=18%  Similarity=0.327  Sum_probs=91.0

Q ss_pred             EEEEEcCCCCEEEEEeC---C-------CcEEEEECCC-CeEEEEec-ccCCCeEEEEEcCCCCEEEEE--eCCCeEEEE
Q 005473          559 ESCHFSPDGKLLATGGH---D-------KKAVLWCTES-FTVKSTLE-EHTQWITDVRFSPSLSRLATS--SADRTVRVW  624 (695)
Q Consensus       559 ~~v~fspdg~~LaSgs~---D-------g~V~IWDl~t-~~~~~~l~-~H~~~V~~v~~spdg~~LaTg--s~DgtIrvW  624 (695)
                      ..+.|+++|++|+.-..   |       +...||.++. ...+..+. ...++|.+++|+|++..|++.  ..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46889999987654332   2       3355555532 23333443 235679999999999886544  457899999


Q ss_pred             ECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEe--CCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       625 Dl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs--~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      |++. + .+..+.  ...+..|.|+|+|+.++++|.  ..|.|.+||+++.+++..+..  ..++.++| +||
T Consensus        89 d~~~-~-~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~W-sPd  154 (194)
T PF08662_consen   89 DVKG-K-KIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEW-SPD  154 (194)
T ss_pred             cCcc-c-EeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEE-cCC
Confidence            9972 3 355553  467889999999996665442  357899999999999888753  34789999 996

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.11  E-value=8.1e-10  Score=114.81  Aligned_cols=157  Identities=19%  Similarity=0.248  Sum_probs=115.6

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCC-CCeEEEEEcCCCCEEEEEeC----CCcEE
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGH----DKKAV  580 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~-~~V~~v~fspdg~~LaSgs~----Dg~V~  580 (695)
                      .+.|.+|+.||+|++|+......                 ........|. .+..|++.+-.++.|++|..    |-.|.
T Consensus        84 ~h~v~s~ssDG~Vr~wD~Rs~~e-----------------~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~  146 (376)
T KOG1188|consen   84 PHGVISCSSDGTVRLWDIRSQAE-----------------SARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVV  146 (376)
T ss_pred             CCeeEEeccCCeEEEEEeecchh-----------------hhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEE
Confidence            37889999999999997754321                 1111223333 45677777767778887754    67799


Q ss_pred             EEECCCCeE-EEEe-cccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCe--eEEEEecCCCCeEEEEEecCCCeE
Q 005473          581 LWCTESFTV-KSTL-EEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDL  655 (695)
Q Consensus       581 IWDl~t~~~-~~~l-~~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWDl~t~~~--~l~~~~gh~~~V~sl~fspdg~~l  655 (695)
                      +||++..+. +..+ +.|.+.|++++|+| +.++|+|||.||.|.|||+.....  .+.....|.+.|.++.|+.++-.-
T Consensus       147 lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykr  226 (376)
T KOG1188|consen  147 LWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKR  226 (376)
T ss_pred             EEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcce
Confidence            999998765 5554 77999999999999 577999999999999999976432  222333477889999999887223


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEE
Q 005473          656 LCSCDNNSEIRYWSINNGSCAGVF  679 (695)
Q Consensus       656 laSgs~Dg~IriWDl~tg~~v~~~  679 (695)
                      |.+-+..++..+|++..+.++..+
T Consensus       227 I~clTH~Etf~~~ele~~~~~~~~  250 (376)
T KOG1188|consen  227 IMCLTHMETFAIYELEDGSEETWL  250 (376)
T ss_pred             EEEEEccCceeEEEccCCChhhcc
Confidence            556778999999999987765443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.10  E-value=1.1e-09  Score=122.61  Aligned_cols=138  Identities=20%  Similarity=0.238  Sum_probs=98.2

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEE--EEecccCCCeEEEEEcCCCCEEEEEe-CCCeEE
Q 005473          549 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRLATSS-ADRTVR  622 (695)
Q Consensus       549 ~~l~~H~~~V~~v~fspdg~~LaSgs~D---g~V~IWDl~t~~~~--~~l~~H~~~V~~v~~spdg~~LaTgs-~DgtIr  622 (695)
                      ..+..|...|.+.+|+|||+.|+.++.+   ..|++||+.+++..  ..+.+|   ..+++|+|||+.|+.++ .+|.+.
T Consensus       197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~  273 (429)
T PRK01742        197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLN  273 (429)
T ss_pred             eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEE
Confidence            3456778889999999999999887754   36999999887643  333333   45789999999887764 677655


Q ss_pred             E--EECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-eEEEEEecCCCcEEEEEEeCCC
Q 005473          623 V--WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       623 v--WDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg-~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      |  ||+.++.  +..+..+...+.++.|+|||+.++++++.+|.++||+++.. .....+ .+..  ..++| +||
T Consensus       274 Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~-SpD  343 (429)
T PRK01742        274 IYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQI-SAD  343 (429)
T ss_pred             EEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccC-CCC
Confidence            5  4666543  45566677778999999999988877777888999987532 222333 3332  34667 765

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.10  E-value=1.2e-09  Score=112.82  Aligned_cols=140  Identities=15%  Similarity=0.228  Sum_probs=117.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC---eEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 005473          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (695)
Q Consensus       554 H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~---~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~  630 (695)
                      -..+|+|.+|++|+..+|.+...+.|.||.....   +..+++..|...|+.|+|+|..+.|++++.|+..+||....+.
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence            3567999999999999999999999999988654   4678899999999999999999999999999999999994433


Q ss_pred             --eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeE--E--EEEecCCCcEEEEEEeCCC
Q 005473          631 --YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--A--GVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       631 --~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~--v--~~~~~h~~~VtsVaf~sPd  695 (695)
                        .+.-++..|...+++|.|+|.+. .|++|+.-..|.||-+....-  +  ..-+.+...|++++| ||+
T Consensus        89 ~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldW-hpn  157 (361)
T KOG1523|consen   89 TWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDW-HPN  157 (361)
T ss_pred             eeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeec-cCC
Confidence              23455667889999999999976 777999899999999875332  1  223367889999999 985

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.06  E-value=6.4e-09  Score=107.51  Aligned_cols=188  Identities=16%  Similarity=0.208  Sum_probs=138.1

Q ss_pred             EEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEec-CCCCCeEEEE
Q 005473          484 LLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCH  562 (695)
Q Consensus       484 ~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~-~H~~~V~~v~  562 (695)
                      -..|+|||.               .+.+-+.|..+.+|..+.+....+.-..       ..+.....++ .....|+..+
T Consensus        54 gckWSPDGS---------------ciL~~sedn~l~~~nlP~dlys~~~~~~-------~~~~~~~~~r~~eg~tvydy~  111 (406)
T KOG2919|consen   54 GCKWSPDGS---------------CILSLSEDNCLNCWNLPFDLYSKKADGP-------LNFSKHLSYRYQEGETVYDYC  111 (406)
T ss_pred             cceeCCCCc---------------eEEeecccCeeeEEecChhhcccCCCCc-------cccccceeEEeccCCEEEEEE
Confidence            347999884               4567778999999988765432221111       1111111111 1234478888


Q ss_pred             Ec-------CCCCEEEEEeCCCcEEEEECCCCeEEEEecc--cC---CCeEEEEEcCCCCEEEEEeCCCeEEEEEC-CCC
Q 005473          563 FS-------PDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HT---QWITDVRFSPSLSRLATSSADRTVRVWDT-ENP  629 (695)
Q Consensus       563 fs-------pdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~--H~---~~V~~v~~spdg~~LaTgs~DgtIrvWDl-~t~  629 (695)
                      |-       |+.+++++.+.|.-|++||.-+++....+.+  |-   ..-.+++|+|||..|+.| ...+|||||+ |.+
T Consensus       112 wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpG  190 (406)
T KOG2919|consen  112 WYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPG  190 (406)
T ss_pred             eeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCC
Confidence            85       5778999999999999999999998877754  32   234689999999999887 5789999999 554


Q ss_pred             Cee-EEE-----EecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          630 DYS-LRT-----FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       630 ~~~-l~~-----~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ..| +..     ..+..+-|.+++|+|.....++.|+....+-||.-..+.++..+.+|.+.||.++| +|+
T Consensus       191 r~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~-~ed  261 (406)
T KOG2919|consen  191 RDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQW-CED  261 (406)
T ss_pred             CCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEe-ccC
Confidence            432 111     12336778999999998878999998888888888888999999999999999999 875

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.06  E-value=2.7e-09  Score=112.63  Aligned_cols=166  Identities=13%  Similarity=0.116  Sum_probs=128.1

Q ss_pred             CCCCcEEEEeeCC--CcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC--CCEEEEEeCCCc
Q 005473          503 TDMDRFVDDGSLD--DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKK  578 (695)
Q Consensus       503 ~~~~~~lasgS~D--~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspd--g~~LaSgs~Dg~  578 (695)
                      .....++++|+..  ..+++|+.....       .+|....-.. ..+ .+ .-.-.++++.|-+.  ...||+++.-+.
T Consensus       158 ~~~p~Iva~GGke~~n~lkiwdle~~~-------qiw~aKNvpn-D~L-~L-rVPvW~tdi~Fl~g~~~~~fat~T~~hq  227 (412)
T KOG3881|consen  158 DTDPYIVATGGKENINELKIWDLEQSK-------QIWSAKNVPN-DRL-GL-RVPVWITDIRFLEGSPNYKFATITRYHQ  227 (412)
T ss_pred             CCCCceEecCchhcccceeeeecccce-------eeeeccCCCC-ccc-cc-eeeeeeccceecCCCCCceEEEEeccee
Confidence            3455788899988  889999765431       2221111000 000 00 00123678899887  789999999999


Q ss_pred             EEEEECCCC-eEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEE
Q 005473          579 AVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC  657 (695)
Q Consensus       579 V~IWDl~t~-~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~lla  657 (695)
                      |++||.+.+ +++..+.--..+|+++...|++++|++|..-|.+..||++.++.....+.+..+.|++|..||.++ +++
T Consensus       228 vR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~-~la  306 (412)
T KOG3881|consen  228 VRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHP-VLA  306 (412)
T ss_pred             EEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCc-eEE
Confidence            999999864 467777777889999999999999999999999999999998876666899999999999999988 888


Q ss_pred             EEeCCCcEEEEECCCCeEEEEE
Q 005473          658 SCDNNSEIRYWSINNGSCAGVF  679 (695)
Q Consensus       658 Sgs~Dg~IriWDl~tg~~v~~~  679 (695)
                      +|+-|..|||+|+.+.+.+...
T Consensus       307 s~GLDRyvRIhD~ktrkll~kv  328 (412)
T KOG3881|consen  307 SCGLDRYVRIHDIKTRKLLHKV  328 (412)
T ss_pred             eeccceeEEEeecccchhhhhh
Confidence            9999999999999997666443

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.06  E-value=8.4e-09  Score=113.92  Aligned_cols=122  Identities=16%  Similarity=0.208  Sum_probs=108.7

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEec--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCe
Q 005473          566 DGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV  643 (695)
Q Consensus       566 dg~~LaSgs~Dg~V~IWDl~t~~~~~~l~--~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V  643 (695)
                      |-..|+-|...|.|.+|++..++....+.  .|.+.|.++.++.+-..|.+++.|+.|.+|+...... ++.+.+-...+
T Consensus        69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~-~~~~~~~~~~~  147 (541)
T KOG4547|consen   69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI-IRIWKEQKPLV  147 (541)
T ss_pred             CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee-eeeeccCCCcc
Confidence            44568888889999999999999888885  6899999999999889999999999999999998654 77888888889


Q ss_pred             EEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473          644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       644 ~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf  691 (695)
                      .+++++|||. ++++++  +.|++||+.+++.+.+|.||.++|.++.|
T Consensus       148 ~sl~is~D~~-~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f  192 (541)
T KOG4547|consen  148 SSLCISPDGK-ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSF  192 (541)
T ss_pred             ceEEEcCCCC-EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEE
Confidence            9999999988 555664  68999999999999999999999999998

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.06  E-value=1.1e-09  Score=127.07  Aligned_cols=143  Identities=22%  Similarity=0.369  Sum_probs=119.5

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~  585 (695)
                      +-++++|+.-+-|-+|....+.                  .++ .+.+|.+.|..+.|+.||++++++++|.++|+|+++
T Consensus       145 ~~~i~~gsv~~~iivW~~~~dn------------------~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~  205 (967)
T KOG0974|consen  145 ELYIASGSVFGEIIVWKPHEDN------------------KPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPID  205 (967)
T ss_pred             EEEEEeccccccEEEEeccccC------------------Ccc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecc
Confidence            3577888888888888554211                  111 578999999999999999999999999999999999


Q ss_pred             CCeEEE-EecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC-CCeEEEEEecCCCeEEEEEeCCC
Q 005473          586 SFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNS  663 (695)
Q Consensus       586 t~~~~~-~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~-~~V~sl~fspdg~~llaSgs~Dg  663 (695)
                      +.+... +.-+|+..|+.++|.|+  .++|++.|.+.++|+.....  +.++.+|. ..+..++..++.. ++++++.||
T Consensus       206 s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~--l~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds  280 (967)
T KOG0974|consen  206 SREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ--LEVYDEHSGKGIWKIAVPIGVI-IKVTGGNDS  280 (967)
T ss_pred             cccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccce--ehhhhhhhhcceeEEEEcCCce-EEEeeccCc
Confidence            988765 67789999999999998  99999999999999876432  55788886 4689999887754 788999999


Q ss_pred             cEEEEECCC
Q 005473          664 EIRYWSINN  672 (695)
Q Consensus       664 ~IriWDl~t  672 (695)
                      .|++||+..
T Consensus       281 ~lk~~~l~~  289 (967)
T KOG0974|consen  281 TLKLWDLNG  289 (967)
T ss_pred             chhhhhhhc
Confidence            999999864

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.05  E-value=3.4e-09  Score=122.66  Aligned_cols=181  Identities=13%  Similarity=0.157  Sum_probs=122.4

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~  585 (695)
                      ..++.+|+.||.|++|.--............|..-.+       .+.+-.+.-.-+.|.....+|+++|+-..|+|||+.
T Consensus      1123 ~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~-------~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~ 1195 (1387)
T KOG1517|consen 1123 DALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSD-------QLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAH 1195 (1387)
T ss_pred             hhheeeeccCceEEEecccccccCCceeEEeeccccc-------cCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecc
Confidence            3678899999999999432221111112222211111       111222222456787766667777778999999999


Q ss_pred             CCeEEEEec-ccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCe--eEEEEecCCCC--eEEEEEecCCCeEEEEE
Q 005473          586 SFTVKSTLE-EHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTT--VMSLDFHPSKEDLLCSC  659 (695)
Q Consensus       586 t~~~~~~l~-~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWDl~t~~~--~l~~~~gh~~~--V~sl~fspdg~~llaSg  659 (695)
                      ...++..+. +....|+++.-+- .|+.|+.|..||.||+||.+....  .+..++.|...  |..+.+-+.|-.-+++|
T Consensus      1196 ~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSg 1275 (1387)
T KOG1517|consen 1196 KEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSG 1275 (1387)
T ss_pred             cceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeee
Confidence            888777663 3445566665543 478999999999999999986543  57788889888  99999998776667799


Q ss_pred             eCCCcEEEEECCCCeE--EEEEecCC--C-cEEEEEEeCC
Q 005473          660 DNNSEIRYWSINNGSC--AGVFKNFF--E-SFVSVRVVQP  694 (695)
Q Consensus       660 s~Dg~IriWDl~tg~~--v~~~~~h~--~-~VtsVaf~sP  694 (695)
                      +.||.|++||+|....  ...+..|.  + .++++.. |+
T Consensus      1276 s~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~V-H~ 1314 (1387)
T KOG1517|consen 1276 SQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTV-HE 1314 (1387)
T ss_pred             ccCCeEEEEecccCcccccceeeeccccCccceeeee-cc
Confidence            9999999999997422  22333443  3 4788877 75

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.04  E-value=4.6e-09  Score=109.91  Aligned_cols=177  Identities=14%  Similarity=0.132  Sum_probs=119.5

Q ss_pred             CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEec-CCCC
Q 005473          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTS  556 (695)
Q Consensus       478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~-~H~~  556 (695)
                      .+.+...+.||..-               ..++.+..|.+|++|+..+.                    +...++ ....
T Consensus        97 s~~dlr~~aWhqH~---------------~~fava~nddvVriy~ksst--------------------~pt~Lks~sQr  141 (445)
T KOG2139|consen   97 SEIDLRGVAWHQHI---------------IAFAVATNDDVVRIYDKSST--------------------CPTKLKSVSQR  141 (445)
T ss_pred             hhcceeeEeechhh---------------hhhhhhccCcEEEEeccCCC--------------------CCceecchhhc
Confidence            44577788888733               33577889999999954321                    111121 1234


Q ss_pred             CeEEEEEcCC-CCEEEEEeCCCcEEEEECCCC----eE----------EEEecccCCCeEEEEEcCCCCEEEEEeC-CCe
Q 005473          557 KVESCHFSPD-GKLLATGGHDKKAVLWCTESF----TV----------KSTLEEHTQWITDVRFSPSLSRLATSSA-DRT  620 (695)
Q Consensus       557 ~V~~v~fspd-g~~LaSgs~Dg~V~IWDl~t~----~~----------~~~l~~H~~~V~~v~~spdg~~LaTgs~-Dgt  620 (695)
                      .|+|++|-|- ++.|+.|+..| |+||.....    ..          +..-.+| .+|++++|.+||..+++++. |..
T Consensus       142 nvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsss  219 (445)
T KOG2139|consen  142 NVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSS  219 (445)
T ss_pred             ceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcce
Confidence            5999999995 45788888766 999976421    11          1112344 68999999999999999986 567


Q ss_pred             EEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-CeEEEEEecCCCcEEEEEEeCCC
Q 005473          621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       621 IrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t-g~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      |.|||++++.. +....-..+.++-+.|+||+.++| ++..|+..++|.... -.+.+-. -..+.|.+-.| +|.
T Consensus       220 i~iWdpdtg~~-~pL~~~glgg~slLkwSPdgd~lf-aAt~davfrlw~e~q~wt~erw~-lgsgrvqtacW-spc  291 (445)
T KOG2139|consen  220 IMIWDPDTGQK-IPLIPKGLGGFSLLKWSPDGDVLF-AATCDAVFRLWQENQSWTKERWI-LGSGRVQTACW-SPC  291 (445)
T ss_pred             EEEEcCCCCCc-ccccccCCCceeeEEEcCCCCEEE-Eecccceeeeehhcccceeccee-ccCCceeeeee-cCC
Confidence            99999998764 322222346788999999999665 667799999996543 3333333 33347777777 763

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.03  E-value=1.1e-08  Score=107.43  Aligned_cols=134  Identities=19%  Similarity=0.271  Sum_probs=107.8

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc---cCCCeEEEEEcCCCCEEEEE-e-CCCeEEEEECCCCC
Q 005473          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE---HTQWITDVRFSPSLSRLATS-S-ADRTVRVWDTENPD  630 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~---H~~~V~~v~~spdg~~LaTg-s-~DgtIrvWDl~t~~  630 (695)
                      .+|.+|.++.  +.|+++-.+. |+|||+++.+.++++..   +...+.++.+++.+.+|+.- + ..|.|.|||+.+-.
T Consensus        88 t~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~  164 (391)
T KOG2110|consen   88 TSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ  164 (391)
T ss_pred             CceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccce
Confidence            4578888864  4566666554 99999999999988853   45557777777777788764 3 36889999999855


Q ss_pred             eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc-EEEEECCCCeEEEEEecCC--CcEEEEEEeCCC
Q 005473          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-IRYWSINNGSCAGVFKNFF--ESFVSVRVVQPR  695 (695)
Q Consensus       631 ~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~-IriWDl~tg~~v~~~~~h~--~~VtsVaf~sPd  695 (695)
                       ++.++..|++.+-+++|+++|. ++|++++.|+ ||||++.+|..+..|+-..  -.|.+|+| ||+
T Consensus       165 -~v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~F-s~d  229 (391)
T KOG2110|consen  165 -PVNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSF-SPD  229 (391)
T ss_pred             -eeeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEE-CCC
Confidence             5889999999999999999998 8889998886 8999999999999999554  45688999 986

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.01  E-value=2.4e-09  Score=116.36  Aligned_cols=134  Identities=11%  Similarity=0.170  Sum_probs=99.8

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      .-+.+.+.||.|++|.-                 .+.   .-.++.....+|+|++|.|+.+.++-|-. +.+.|=-+..
T Consensus       117 tgLlt~GEDG~iKiWSr-----------------sGM---LRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~  175 (737)
T KOG1524|consen  117 AGLLTAGEDGVIKIWSR-----------------SGM---LRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAA  175 (737)
T ss_pred             ceeeeecCCceEEEEec-----------------cch---HHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeeccc
Confidence            45678889999999922                 110   01122334567999999998876555443 4566666666


Q ss_pred             CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEE
Q 005473          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (695)
Q Consensus       587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~Ir  666 (695)
                      ...+..++.|.+-|.++.|++...++++|+.|...+|||.-. . .+.+...|.-+|++++|.|+ + +++.++. .+.|
T Consensus       176 n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~-~Lf~S~~~ey~ITSva~npd-~-~~~v~S~-nt~R  250 (737)
T KOG1524|consen  176 NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-A-NLFTSAAEEYAITSVAFNPE-K-DYLLWSY-NTAR  250 (737)
T ss_pred             ccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-c-ccccCChhccceeeeeeccc-c-ceeeeee-eeee
Confidence            566678899999999999999999999999999999999874 3 46777789999999999999 3 4555553 3444

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.00  E-value=9.5e-09  Score=117.72  Aligned_cols=169  Identities=20%  Similarity=0.260  Sum_probs=129.2

Q ss_pred             CCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCC---CEEEEEeCCCcEE
Q 005473          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG---KLLATGGHDKKAV  580 (695)
Q Consensus       504 ~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg---~~LaSgs~Dg~V~  580 (695)
                      ...+++... .+..|++|....+                   .++..+.+|..+++.+.+.|..   .++++++.||+|+
T Consensus        26 nD~k~l~~~-~~~~V~VyS~~Tg-------------------~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~   85 (792)
T KOG1963|consen   26 NDAKFLFLC-TGNFVKVYSTATG-------------------ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIR   85 (792)
T ss_pred             cCCcEEEEe-eCCEEEEEecchH-------------------hhhhhcccccCccceeeecCCCccceEEEEEecCccEE
Confidence            333555544 4578888844332                   3556788999999999998854   4788999999999


Q ss_pred             EEECCCCeEEEEec------------------------------------------------------------------
Q 005473          581 LWCTESFTVKSTLE------------------------------------------------------------------  594 (695)
Q Consensus       581 IWDl~t~~~~~~l~------------------------------------------------------------------  594 (695)
                      +||...+..++++.                                                                  
T Consensus        86 vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~  165 (792)
T KOG1963|consen   86 VWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKS  165 (792)
T ss_pred             EecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCcc
Confidence            99876544333221                                                                  


Q ss_pred             -------------------------------------ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC---CCCeeEE
Q 005473          595 -------------------------------------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NPDYSLR  634 (695)
Q Consensus       595 -------------------------------------~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~---t~~~~l~  634 (695)
                                                           .|...++|++++|+++++++|..||.|.+|.--   ..+....
T Consensus       166 I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t  245 (792)
T KOG1963|consen  166 IVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCT  245 (792)
T ss_pred             EEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccce
Confidence                                                 145557899999999999999999999999542   2234457


Q ss_pred             EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       635 ~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      .+.-|...|+++.|+++|.+++ +|+..|.+.+|-+.+++ -.-+.--.++|..+.+ +||
T Consensus       246 ~lHWH~~~V~~L~fS~~G~~Ll-SGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~v-S~d  303 (792)
T KOG1963|consen  246 LLHWHHDEVNSLSFSSDGAYLL-SGGREGVLVLWQLETGK-KQFLPRLGSPILHIVV-SPD  303 (792)
T ss_pred             EEEecccccceeEEecCCceEe-ecccceEEEEEeecCCC-cccccccCCeeEEEEE-cCC
Confidence            8888999999999999999555 99999999999999987 4445556788899998 876

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.99  E-value=2.9e-08  Score=111.42  Aligned_cols=142  Identities=13%  Similarity=0.138  Sum_probs=104.9

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEE-EEeCCCe--EE
Q 005473          549 QLIPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRT--VR  622 (695)
Q Consensus       549 ~~l~~H~~~V~~v~fspdg~~LaSgs~---Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~La-Tgs~Dgt--Ir  622 (695)
                      ..+..|...|.+.+|+|||+.|+..+.   +..|++||+.+++.. .+..+.+.+.+.+|+|||+.|+ +.+.++.  |+
T Consensus       195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy  273 (435)
T PRK05137        195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY  273 (435)
T ss_pred             EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence            345577888999999999998887764   468999999887654 4555677788999999998775 5555655  88


Q ss_pred             EEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       623 vWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg--~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +||++++.  +..+..+.+.+.+..|+|||+.++++...+|  .|++||+..++.. .+..+...+...+| +||
T Consensus       274 ~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~-Spd  344 (435)
T PRK05137        274 TMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVW-SPR  344 (435)
T ss_pred             EEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEE-CCC
Confidence            88988754  3556666667788999999998776665544  5888888766543 34334455667788 885

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.98  E-value=1.2e-09  Score=117.13  Aligned_cols=142  Identities=12%  Similarity=0.185  Sum_probs=120.8

Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 005473          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (695)
Q Consensus       546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWD  625 (695)
                      .++++++.|.. |..+.|-|.--+|++++..|.++.-|+.+|+.+..+..-.+.+..++-+|-...+-+|...|+|.+|.
T Consensus       201 tElHClk~~~~-v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWS  279 (545)
T KOG1272|consen  201 TELHCLKRHIR-VARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWS  279 (545)
T ss_pred             cEEeehhhcCc-hhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecC
Confidence            57788887765 89999999998999999999999999999999999988889999999999888999999999999999


Q ss_pred             CCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       626 l~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf  691 (695)
                      ..... ++..+.+|.+.|.+|+++++|. ++++.+.|..|+|||++....+.++.. ..+...++|
T Consensus       280 P~ske-PLvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~  342 (545)
T KOG1272|consen  280 PNSKE-PLVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSL  342 (545)
T ss_pred             CCCcc-hHHHHHhcCCCcceEEECCCCc-EEeecccccceeEeeeccccccceeec-CCCcccccc
Confidence            98755 4667778999999999999998 677999999999999998776665543 223344444

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.98  E-value=5.2e-09  Score=111.05  Aligned_cols=161  Identities=17%  Similarity=0.213  Sum_probs=110.3

Q ss_pred             CCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005473          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (695)
Q Consensus       504 ~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWD  583 (695)
                      +..++++++..+....++++.....             +..+....++......+..+..+......-.+++++.+.+|.
T Consensus        72 ~~~~llAv~~~~K~~~~f~~~~~~~-------------~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s  138 (390)
T KOG3914|consen   72 DSGRLVAVATSSKQRAVFDYRENPK-------------GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILS  138 (390)
T ss_pred             CCceEEEEEeCCCceEEEEEecCCC-------------cceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeec
Confidence            3447888887777766665543321             111111122222222333444333333333445566677777


Q ss_pred             CCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC
Q 005473          584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (695)
Q Consensus       584 l~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg  663 (695)
                      ...+.+. -+-||-+.+++|+|+||+.+|+|+..|..|||-.+.........+-||+..|..++.-++.  .|.+|+.|+
T Consensus       139 ~~~~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~--~LlS~sGD~  215 (390)
T KOG3914|consen  139 ADSGRCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY--LLLSGSGDK  215 (390)
T ss_pred             ccccCcc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc--eeeecCCCC
Confidence            6664444 4558999999999999999999999999999998876554334566899999999998773  467999999


Q ss_pred             cEEEEECCCCeEEEEEe
Q 005473          664 EIRYWSINNGSCAGVFK  680 (695)
Q Consensus       664 ~IriWDl~tg~~v~~~~  680 (695)
                      +|++||+++|+++.++.
T Consensus       216 tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  216 TLRLWDITSGKLLDTCD  232 (390)
T ss_pred             cEEEEecccCCcccccc
Confidence            99999999999997765

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.97  E-value=2.5e-08  Score=111.85  Aligned_cols=135  Identities=15%  Similarity=0.155  Sum_probs=88.4

Q ss_pred             CCCeEEEEEcCCCCEEE-EEeCCCcEEEEEC--CCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEC--CC
Q 005473          555 TSKVESCHFSPDGKLLA-TGGHDKKAVLWCT--ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDT--EN  628 (695)
Q Consensus       555 ~~~V~~v~fspdg~~La-Sgs~Dg~V~IWDl--~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~-DgtIrvWDl--~t  628 (695)
                      .+.+.+.+|+|||+.|+ +.+.|+...||.+  .++. ...+..+.+.+..+.|+|||+.|+..+. ++...||.+  .+
T Consensus       239 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~  317 (427)
T PRK02889        239 KGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG  317 (427)
T ss_pred             CCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC
Confidence            34467899999999776 5677887676654  4443 4556656666778899999998876554 466666654  44


Q ss_pred             CCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       629 ~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg--~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +..  ..+..+.......+|+|||+.+++++..++  .|.+||+.+++... +..+ .....+.| +||
T Consensus       318 g~~--~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~-spd  381 (427)
T PRK02889        318 GAA--QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSF-APN  381 (427)
T ss_pred             Cce--EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceE-CCC
Confidence            332  222222334557899999997765554433  69999998876543 3222 23366788 875

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.96  E-value=3.9e-08  Score=105.98  Aligned_cols=136  Identities=14%  Similarity=0.183  Sum_probs=90.9

Q ss_pred             CeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEE-------EecccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECC
Q 005473          557 KVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKS-------TLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTE  627 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs-~Dg~V~IWDl~t~~~~~-------~l~~H~~~V~~v~~spdg~~LaTgs~-DgtIrvWDl~  627 (695)
                      ...+++|+|+++++++++ .++.|+|||+.+...+.       .+. .......+.|+|++++|++++. +++|.+||++
T Consensus       127 ~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~  205 (330)
T PRK11028        127 GCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK  205 (330)
T ss_pred             cccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence            367889999999886655 56999999997633221       111 1344678999999999988876 8999999997


Q ss_pred             CC--Ce-eEEEEecC------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe----EEEEEecCCCcEEEEEEeCC
Q 005473          628 NP--DY-SLRTFTGH------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS----CAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       628 t~--~~-~l~~~~gh------~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~----~v~~~~~h~~~VtsVaf~sP  694 (695)
                      ..  .. .+..+..+      ......+.|+|++++++++...++.|.+|++....    .+..+... .....++| +|
T Consensus       206 ~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~-~~  283 (330)
T PRK11028        206 DPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNI-DH  283 (330)
T ss_pred             CCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEE-CC
Confidence            42  21 22333221      12344688999999777766668999999996532    23333222 23356777 77


Q ss_pred             C
Q 005473          695 R  695 (695)
Q Consensus       695 d  695 (695)
                      +
T Consensus       284 d  284 (330)
T PRK11028        284 S  284 (330)
T ss_pred             C
Confidence            5

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.96  E-value=2.1e-08  Score=112.41  Aligned_cols=142  Identities=18%  Similarity=0.177  Sum_probs=95.9

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEE-EEeCCCeEEEEEC
Q 005473          551 IPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDT  626 (695)
Q Consensus       551 l~~H~~~V~~v~fspdg~~LaSgs~D---g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~La-Tgs~DgtIrvWDl  626 (695)
                      +..+...|.+.+|+|||+.|+.++.+   ..|++||+.+++... +....+.+.+++|+|||+.|+ +.+.++...||.+
T Consensus       191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  269 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV  269 (427)
T ss_pred             eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence            44567789999999999998877653   359999999887653 333445677899999998876 5677887666654


Q ss_pred             CCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC--CCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI--NNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       627 ~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl--~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +.....+..+..+.+.+.+..|+|||+.+++++..+|...||.+  .+++... +..+.......+| +||
T Consensus       270 d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~~~~-SpD  338 (427)
T PRK02889        270 NADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTSPRI-SPD  338 (427)
T ss_pred             ECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCceEE-CCC
Confidence            32222245566566667788999999988877666677777755  4444322 2222223345677 775

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.95  E-value=5e-08  Score=105.09  Aligned_cols=166  Identities=12%  Similarity=0.128  Sum_probs=110.6

Q ss_pred             EEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECC-C
Q 005473          509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTE-S  586 (695)
Q Consensus       509 lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs-~Dg~V~IWDl~-t  586 (695)
                      .++...|+.|.+|+.....                ....+..+.. .+....++++|++++|++++ .++.|.+|+++ +
T Consensus         5 y~~~~~~~~I~~~~~~~~g----------------~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~   67 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEG----------------ALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADD   67 (330)
T ss_pred             EEEcCCCCCEEEEEECCCC----------------ceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCC
Confidence            3444678999999663211                1233344432 34467899999999887765 47889999996 3


Q ss_pred             CeE--EEEecccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCe---eEEEEecCCCCeEEEEEecCCCeEEEEEe
Q 005473          587 FTV--KSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (695)
Q Consensus       587 ~~~--~~~l~~H~~~V~~v~~spdg~~LaTgs~-DgtIrvWDl~t~~~---~l~~~~gh~~~V~sl~fspdg~~llaSgs  660 (695)
                      +..  +.... ..+....+.|+|++++|++++. ++.|.+||+++...   .+..+. +...+.+++|+|+++.+++++.
T Consensus        68 g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~  145 (330)
T PRK11028         68 GALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCL  145 (330)
T ss_pred             CceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeC
Confidence            332  22222 3345678999999999888764 88999999975332   223332 2345678899999998888888


Q ss_pred             CCCcEEEEECCCCeEEE-------EEecCCCcEEEEEEeCCC
Q 005473          661 NNSEIRYWSINNGSCAG-------VFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       661 ~Dg~IriWDl~tg~~v~-------~~~~h~~~VtsVaf~sPd  695 (695)
                      .++.|++||+++...+.       .+... .....++| +|+
T Consensus       146 ~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-~~p~~~~~-~pd  185 (330)
T PRK11028        146 KEDRIRLFTLSDDGHLVAQEPAEVTTVEG-AGPRHMVF-HPN  185 (330)
T ss_pred             CCCEEEEEEECCCCcccccCCCceecCCC-CCCceEEE-CCC
Confidence            89999999998632221       12222 33467888 885

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.95  E-value=5.9e-08  Score=108.97  Aligned_cols=138  Identities=13%  Similarity=0.087  Sum_probs=94.7

Q ss_pred             cCCCCCeEEEEEcCCCCEEE-EEeCCCc--EEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEE
Q 005473          552 PASTSKVESCHFSPDGKLLA-TGGHDKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWD  625 (695)
Q Consensus       552 ~~H~~~V~~v~fspdg~~La-Sgs~Dg~--V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~-Dg--tIrvWD  625 (695)
                      ..+.+.+.+.+|+|||+.|+ +.+.++.  |++||+.++.. ..+..+.+.+...+|+|||+.|+..+. ++  .|++||
T Consensus       242 ~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d  320 (435)
T PRK05137        242 GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMN  320 (435)
T ss_pred             ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEE
Confidence            34555678899999999765 5555655  77779887765 456666677788999999998877663 33  588889


Q ss_pred             CCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC--CcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       626 l~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D--g~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +..+..  ..+..+.+.+....|+|||+.++++....  ..|.+||+..+. ...+.. ...+..+.| +||
T Consensus       321 ~~g~~~--~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~-~~~~~~p~~-spD  387 (435)
T PRK05137        321 ADGSNP--RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTS-GFLVEGPTW-APN  387 (435)
T ss_pred             CCCCCe--EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccC-CCCCCCCeE-CCC
Confidence            876543  44443455677889999999777665433  368888876543 344432 224566778 775

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.94  E-value=3.7e-08  Score=110.54  Aligned_cols=137  Identities=11%  Similarity=0.029  Sum_probs=95.5

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCC-Cc--EEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCC---CeEEEEE
Q 005473          552 PASTSKVESCHFSPDGKLLATGGHD-KK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWD  625 (695)
Q Consensus       552 ~~H~~~V~~v~fspdg~~LaSgs~D-g~--V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~D---gtIrvWD  625 (695)
                      ..+...+....|+|||+.|+.++.+ +.  |+++|+.+++.. .+..+...+.+.+|+|+|++|+..+.+   ..|++||
T Consensus       283 t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~d  361 (429)
T PRK03629        283 TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQD  361 (429)
T ss_pred             cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEE
Confidence            3344567889999999988776654 44  444577666543 444445556789999999998776543   3588999


Q ss_pred             CCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       626 l~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg--~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      +.++..  ..+... ....+..|+|||..+++++...+  .+++|++ +|.....+.+|.+.+...+| +|
T Consensus       362 l~~g~~--~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~W-sp  427 (429)
T PRK03629        362 LATGGV--QVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAW-SP  427 (429)
T ss_pred             CCCCCe--EEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCccc-CC
Confidence            987653  333322 23457889999997776655332  3777787 46677778888889999999 88

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.93  E-value=4e-08  Score=115.73  Aligned_cols=177  Identities=15%  Similarity=0.145  Sum_probs=125.7

Q ss_pred             CCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005473          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (695)
Q Consensus       503 ~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IW  582 (695)
                      .++..|+++||.||+|++|+...-.            ..+...+...++.--...|.++.+.+.+..+|.++.||.|.+.
T Consensus      1058 ~~~~s~FvsgS~DGtVKvW~~~k~~------------~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~ 1125 (1431)
T KOG1240|consen 1058 SEHTSLFVSGSDDGTVKVWNLRKLE------------GEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVL 1125 (1431)
T ss_pred             CCCCceEEEecCCceEEEeeehhhh------------cCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEE
Confidence            4455899999999999999764321            1112334444554456679999999999999999999999999


Q ss_pred             ECCCC-------eEEEEeccc-CCCeEEE-EEcC-CCC-EEEEEeCCCeEEEEECCCCCeeEEEE--ecCCCCeEEEEEe
Q 005473          583 CTESF-------TVKSTLEEH-TQWITDV-RFSP-SLS-RLATSSADRTVRVWDTENPDYSLRTF--TGHSTTVMSLDFH  649 (695)
Q Consensus       583 Dl~t~-------~~~~~l~~H-~~~V~~v-~~sp-dg~-~LaTgs~DgtIrvWDl~t~~~~l~~~--~gh~~~V~sl~fs  649 (695)
                      +++-.       .+.+....+ .+.|.++ +|.. ... .|+.+..-+.|..||++.... +.++  .-..+.|++++.+
T Consensus      1126 ~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~-~w~lk~~~~hG~vTSi~id 1204 (1431)
T KOG1240|consen 1126 RIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD-AWRLKNQLRHGLVTSIVID 1204 (1431)
T ss_pred             EccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh-HHhhhcCccccceeEEEec
Confidence            98652       122222222 2333333 4433 233 677788889999999987442 2222  2223789999999


Q ss_pred             cCCCeEEEEEeCCCcEEEEECCCCeEEEEEe-cCCCcEEEEEEeCC
Q 005473          650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-NFFESFVSVRVVQP  694 (695)
Q Consensus       650 pdg~~llaSgs~Dg~IriWDl~tg~~v~~~~-~h~~~VtsVaf~sP  694 (695)
                      |.+. +++.|+..|.+.+||+|-+.++..+. ++..+|..|.. +|
T Consensus      1205 p~~~-WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~-~~ 1248 (1431)
T KOG1240|consen 1205 PWCN-WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWL-CP 1248 (1431)
T ss_pred             CCce-EEEEecCCceEEEEEeecCceeecccCcccCCcceEEe-ec
Confidence            9988 66699999999999999999988877 55678888776 65

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.91  E-value=4.3e-08  Score=108.39  Aligned_cols=146  Identities=21%  Similarity=0.247  Sum_probs=122.4

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      ..++-|...|.|.++....+.                 .+..-.-..|.+.|.++.|+.+-..|+|++.|+.|..|+...
T Consensus        71 ~~lvlgt~~g~v~~ys~~~g~-----------------it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~  133 (541)
T KOG4547|consen   71 SMLVLGTPQGSVLLYSVAGGE-----------------ITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE  133 (541)
T ss_pred             eEEEeecCCccEEEEEecCCe-----------------EEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc
Confidence            466777777777777443321                 122222246999999999999999999999999999999999


Q ss_pred             CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecC-----CCeEEEEEeC
Q 005473          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS-----KEDLLCSCDN  661 (695)
Q Consensus       587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspd-----g~~llaSgs~  661 (695)
                      ...++.+.+....+.+++++||+..+++++  +.|++||+.+++. +.+|.||.+.|.++.|--+     |.++|.+...
T Consensus       134 ~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kev-v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~  210 (541)
T KOG4547|consen  134 KVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEV-VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAA  210 (541)
T ss_pred             ceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceE-EEEecCCCcceEEEEEEEeccccccceeeecccc
Confidence            999999999999999999999999999997  7899999999665 9999999999999999877     7888878788


Q ss_pred             CCcEEEEECCC
Q 005473          662 NSEIRYWSINN  672 (695)
Q Consensus       662 Dg~IriWDl~t  672 (695)
                      +..|.+|-+..
T Consensus       211 ~r~i~~w~v~~  221 (541)
T KOG4547|consen  211 ERGITVWVVEK  221 (541)
T ss_pred             ccceeEEEEEc
Confidence            88899998754

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.91  E-value=6.4e-08  Score=108.68  Aligned_cols=135  Identities=16%  Similarity=0.117  Sum_probs=92.0

Q ss_pred             CCCeEEEEEcCCCCEEE-EEeCCC--cEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC-CCe--EEEEECCC
Q 005473          555 TSKVESCHFSPDGKLLA-TGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRT--VRVWDTEN  628 (695)
Q Consensus       555 ~~~V~~v~fspdg~~La-Sgs~Dg--~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~-Dgt--IrvWDl~t  628 (695)
                      .+.+.+++|+|||+.|+ +.+.++  .|++||+.+++.. .+..+......++|+||++.|+.++. ++.  |+++|+.+
T Consensus       247 ~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~  325 (433)
T PRK04922        247 RGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG  325 (433)
T ss_pred             CCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence            34456889999999765 455555  5999999887654 45556666678999999998877663 444  77777776


Q ss_pred             CCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       629 ~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg--~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +..  ..+..+......++|+|||+.++++...++  .|.+||+.+++.. .+. +...+..+.| +||
T Consensus       326 g~~--~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~-spd  389 (433)
T PRK04922        326 GSA--ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSF-APN  389 (433)
T ss_pred             CCe--EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceE-CCC
Confidence            553  223223345567899999997776654443  6999999887655 333 2223456677 775

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.90  E-value=5.3e-08  Score=109.35  Aligned_cols=142  Identities=23%  Similarity=0.189  Sum_probs=100.8

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEE-EEeCCC--eEE
Q 005473          549 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADR--TVR  622 (695)
Q Consensus       549 ~~l~~H~~~V~~v~fspdg~~LaSgs~D---g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~La-Tgs~Dg--tIr  622 (695)
                      ..+..|...|.+.+|+|||+.|+.++.+   ..|++||+.+++... +..+.+.+.+++|+|+|+.|+ +.+.++  .|+
T Consensus       197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy  275 (433)
T PRK04922        197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIY  275 (433)
T ss_pred             eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEE
Confidence            3445667789999999999998887743   469999998876543 334455566899999998775 455555  599


Q ss_pred             EEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc--EEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       623 vWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~--IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +||+.++.  +..+..+......++|+|||+.+++++..+|.  |+++|+.+++.... ..+......++| +||
T Consensus       276 ~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l-t~~g~~~~~~~~-SpD  346 (433)
T PRK04922        276 VMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL-TFQGNYNARASV-SPD  346 (433)
T ss_pred             EEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-ecCCCCccCEEE-CCC
Confidence            99998765  34555566666789999999988777666665  66677777654332 223233456788 875

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.89  E-value=1.4e-07  Score=105.82  Aligned_cols=132  Identities=16%  Similarity=0.137  Sum_probs=89.2

Q ss_pred             eEEEEEcCCCCEEEEE-eCCC--cEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCC-Ce--EEEEECCCCCe
Q 005473          558 VESCHFSPDGKLLATG-GHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RT--VRVWDTENPDY  631 (695)
Q Consensus       558 V~~v~fspdg~~LaSg-s~Dg--~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~D-gt--IrvWDl~t~~~  631 (695)
                      +.+++|+|||+.|+.. +.+|  .|++||+++++... +..+...+....|+|||+.|+.++.+ +.  |+++|+.++..
T Consensus       245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~  323 (429)
T PRK03629        245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP  323 (429)
T ss_pred             cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence            4568999999987754 4444  58899998877654 44445677899999999988776653 44  55557766543


Q ss_pred             eEEEEecCCCCeEEEEEecCCCeEEEEEeCC--CcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       632 ~l~~~~gh~~~V~sl~fspdg~~llaSgs~D--g~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                        ..+..+...+.+..|+|||+.+++++..+  ..|++||+.+++.. .+... .......| +||
T Consensus       324 --~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~-SpD  384 (429)
T PRK03629        324 --QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSI-APN  384 (429)
T ss_pred             --EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceE-CCC
Confidence              34444445567899999999777666544  35888999887644 33321 12245677 775

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.89  E-value=4.3e-08  Score=114.13  Aligned_cols=130  Identities=21%  Similarity=0.287  Sum_probs=107.9

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecC
Q 005473          560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH  639 (695)
Q Consensus       560 ~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh  639 (695)
                      -+-++++.-++++|+.-+.|.+|+...-+.-..+.+|.+.|.++.|+-+|+++++.|+|+++|+|++++.+....+..+|
T Consensus       138 ~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgH  217 (967)
T KOG0974|consen  138 IIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGH  217 (967)
T ss_pred             EEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccc
Confidence            34456677789999999999999987433333688999999999999999999999999999999999987755577899


Q ss_pred             CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCC-CcEEEEEEeCC
Q 005473          640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFF-ESFVSVRVVQP  694 (695)
Q Consensus       640 ~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~-~~VtsVaf~sP  694 (695)
                      +..|+.++|+|+   .+++++.|-+.++|+.. ++.+.++.+|. ..|..++. ++
T Consensus       218 saRvw~~~~~~n---~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~-~~  268 (967)
T KOG0974|consen  218 SARVWACCFLPN---RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAV-PI  268 (967)
T ss_pred             cceeEEEEeccc---eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEE-cC
Confidence            999999999998   56799999999999765 55566888775 46677776 54

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=98.88  E-value=2.6e-08  Score=113.47  Aligned_cols=124  Identities=18%  Similarity=0.249  Sum_probs=99.7

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeEEEEecccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEE
Q 005473          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWD  625 (695)
Q Consensus       548 v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~-t~~~~~~l~~H~~~V~~v~~spd-g~~LaTgs~DgtIrvWD  625 (695)
                      ......|.++|+++.++|-+..++..+.|-+|+||... ...++..+..+...|++++|||. ...|+++..||.|.+||
T Consensus       391 ~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWD  470 (555)
T KOG1587|consen  391 HSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWD  470 (555)
T ss_pred             cccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhh
Confidence            34556788999999999988766666669999999987 66778788888889999999996 45778888899999999


Q ss_pred             CCCCC-eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473          626 TENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (695)
Q Consensus       626 l~t~~-~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t  672 (695)
                      +.... .++....-+....+.+.|++.|+ +++.|+..|.|++|++..
T Consensus       471 Ll~~~~~Pv~s~~~~~~~l~~~~~s~~g~-~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  471 LLQDDEEPVLSQKVCSPALTRVRWSPNGK-LLAVGDANGTTHILKLSE  517 (555)
T ss_pred             hhccccCCcccccccccccceeecCCCCc-EEEEecCCCcEEEEEcCc
Confidence            96432 34444444456667788888887 788999999999999964

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.87  E-value=1.2e-07  Score=98.18  Aligned_cols=105  Identities=21%  Similarity=0.315  Sum_probs=85.7

Q ss_pred             CCCEEEEEe-CCCcEEEEECCCCeE--EEEecccCCCeEEEEEcCCCCEEEEEeCCCe-EEEEECCCCCeeEEEEecC--
Q 005473          566 DGKLLATGG-HDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRT-VRVWDTENPDYSLRTFTGH--  639 (695)
Q Consensus       566 dg~~LaSgs-~Dg~V~IWDl~t~~~--~~~l~~H~~~V~~v~~spdg~~LaTgs~Dgt-IrvWDl~t~~~~l~~~~gh--  639 (695)
                      +..+||.-| .-|.|.|-|+...+.  ...+.+|.+.|.||+.+-+|.+|||+|..|+ |||||..++.. +..++.-  
T Consensus       147 ~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~-l~E~RRG~d  225 (346)
T KOG2111|consen  147 NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTL-LQELRRGVD  225 (346)
T ss_pred             CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcE-eeeeecCCc
Confidence            344555544 468999999976554  4678999999999999999999999999998 89999999876 5555432  


Q ss_pred             CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473          640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (695)
Q Consensus       640 ~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t  672 (695)
                      ...|.+++|+|+.. +||++++.|+|+||.++.
T Consensus       226 ~A~iy~iaFSp~~s-~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  226 RADIYCIAFSPNSS-WLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             hheEEEEEeCCCcc-EEEEEcCCCeEEEEEeec
Confidence            25699999999988 677888899999999875

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.86  E-value=8.8e-08  Score=101.42  Aligned_cols=176  Identities=18%  Similarity=0.281  Sum_probs=133.8

Q ss_pred             cCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC-EEEEEeCC--Cc
Q 005473          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHD--KK  578 (695)
Q Consensus       502 l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~-~LaSgs~D--g~  578 (695)
                      +.-.+.++.+|-.+|.+.+|....+...            .   .+...+..+ ..+..+.-++... .+++||..  ..
T Consensus       111 l~~~dg~Litc~~sG~l~~~~~k~~d~h------------s---s~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~  174 (412)
T KOG3881|consen  111 LKLADGTLITCVSSGNLQVRHDKSGDLH------------S---SKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINE  174 (412)
T ss_pred             hhhcCCEEEEEecCCcEEEEeccCCccc------------c---ccceeeecC-CceeeeccCCCCCceEecCchhcccc
Confidence            4455678888899999999955332100            1   111222222 3366666666555 45558877  88


Q ss_pred             EEEEECCCCeEEEEecc---------cCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEE
Q 005473          579 AVLWCTESFTVKSTLEE---------HTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD  647 (695)
Q Consensus       579 V~IWDl~t~~~~~~l~~---------H~~~V~~v~~spd--g~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~  647 (695)
                      +.|||+...+.+..-+.         -.-+++++.|-+.  ...|||+..-+.||+||++..+.++..|.-.+..|+++.
T Consensus       175 lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~  254 (412)
T KOG3881|consen  175 LKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTG  254 (412)
T ss_pred             eeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeee
Confidence            99999998755443221         1245778999886  788999999999999999999999999988888999999


Q ss_pred             EecCCCeEEEEEeCCCcEEEEECCCCeEEEE-EecCCCcEEEEEEeCCC
Q 005473          648 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FKNFFESFVSVRVVQPR  695 (695)
Q Consensus       648 fspdg~~llaSgs~Dg~IriWDl~tg~~v~~-~~~h~~~VtsVaf~sPd  695 (695)
                      ..|++. ++++|..-|.+..||++.++.+.. +++.++.|++|.. ||.
T Consensus       255 l~p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~-hp~  301 (412)
T KOG3881|consen  255 LTPSGN-FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHC-HPT  301 (412)
T ss_pred             ecCCCc-EEEEecccchhheecccCceeeccccCCccCCcceEEE-cCC
Confidence            999998 566999999999999999998877 8899999999998 884

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=98.84  E-value=1.9e-07  Score=103.90  Aligned_cols=198  Identities=15%  Similarity=0.202  Sum_probs=134.0

Q ss_pred             CCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCC---CccccccccC---------CCce
Q 005473          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPR---DRVGRSAEVG---------KGFT  544 (695)
Q Consensus       477 s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~---~~~~~~~d~~---------~~~~  544 (695)
                      .+.+.+.++.|+.+|               ..+++|+.|..|-+|...-.+-.+   .....+....         .-..
T Consensus        51 gHKDtVycVAys~dG---------------krFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsd  115 (1081)
T KOG1538|consen   51 GHKDTVYCVAYAKDG---------------KRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSD  115 (1081)
T ss_pred             cccceEEEEEEccCC---------------ceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhh
Confidence            455667777777777               567999999999999653322110   0001000000         0000


Q ss_pred             ---e-eeEEEecC--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe---cccCCCeEEEEEcCCC-----C
Q 005473          545 ---F-TEFQLIPA--STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL---EEHTQWITDVRFSPSL-----S  610 (695)
Q Consensus       545 ---~-~~v~~l~~--H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l---~~H~~~V~~v~~spdg-----~  610 (695)
                         | ..-+.+..  ....|.||+|..||.+|+.|-.||+|.|-+-. ++....+   .|...+|++|+|+|..     .
T Consensus       116 FglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~d  194 (1081)
T KOG1538|consen  116 FGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRND  194 (1081)
T ss_pred             ccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccc
Confidence               0 00011111  23458899999999999999999999998754 4443344   3467899999999953     3


Q ss_pred             EEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEE
Q 005473          611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVR  690 (695)
Q Consensus       611 ~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVa  690 (695)
                      .+++.....++.+|.+.. .. +..-....-...|+.+.++|.+++ .|+.|+.+++|- +.|-.+.++.....+|++|+
T Consensus       195 i~aV~DW~qTLSFy~LsG-~~-Igk~r~L~FdP~CisYf~NGEy~L-iGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~  270 (1081)
T KOG1538|consen  195 ILAVADWGQTLSFYQLSG-KQ-IGKDRALNFDPCCISYFTNGEYIL-LGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQ  270 (1081)
T ss_pred             eEEEEeccceeEEEEecc-ee-ecccccCCCCchhheeccCCcEEE-EccCCCceEEEe-ecCeEEeeccccceeEEEEE
Confidence            678888888999988874 32 222223334567899999999655 777799999997 66888888888889999999


Q ss_pred             EeCCC
Q 005473          691 VVQPR  695 (695)
Q Consensus       691 f~sPd  695 (695)
                      . +|+
T Consensus       271 ~-~PN  274 (1081)
T KOG1538|consen  271 A-KPN  274 (1081)
T ss_pred             E-ccC
Confidence            8 986

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.82  E-value=3.1e-07  Score=95.16  Aligned_cols=80  Identities=26%  Similarity=0.323  Sum_probs=72.7

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeCCCc-EEEEECCCCeEEEEecc--cCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 005473          549 QLIPASTSKVESCHFSPDGKLLATGGHDKK-AVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (695)
Q Consensus       549 ~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~-V~IWDl~t~~~~~~l~~--H~~~V~~v~~spdg~~LaTgs~DgtIrvWD  625 (695)
                      ..+.+|.+.|.|++.+.+|.+||||+..|+ |||||..+++.+..++.  ....|+||+|+|+..+|+++|+.|+|+||.
T Consensus       175 ~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~  254 (346)
T KOG2111|consen  175 SIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS  254 (346)
T ss_pred             eEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence            567899999999999999999999999887 78999999999988853  246799999999999999999999999998


Q ss_pred             CCC
Q 005473          626 TEN  628 (695)
Q Consensus       626 l~t  628 (695)
                      ++.
T Consensus       255 l~~  257 (346)
T KOG2111|consen  255 LRD  257 (346)
T ss_pred             eec
Confidence            875

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.81  E-value=1.2e-08  Score=109.75  Aligned_cols=165  Identities=16%  Similarity=0.241  Sum_probs=118.4

Q ss_pred             CceEEEEecCCC--cccc----ccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 005473          481 SKSLLMFGSDGM--GSLT----SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS  554 (695)
Q Consensus       481 ~~s~l~~~~dg~--~~la----~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H  554 (695)
                      -+.+..|...|+  .|+.    +..-.|.+..-++++++..|.++.-++..+                   ..+..+...
T Consensus       190 K~y~yvYD~~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G-------------------klVa~~~t~  250 (545)
T KOG1272|consen  190 KKYVYVYDNNGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTG-------------------KLVASIRTG  250 (545)
T ss_pred             hceEEEecCCCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechh-------------------hhhHHHHcc
Confidence            445566666665  2221    111123444455666766666666544333                   233444555


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 005473          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (695)
Q Consensus       555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~  634 (695)
                      .+.+..++-+|-+-.+-+|...|+|.+|.-...+++..+-.|.++|.+|++.++|.+++|++.|..|+|||++.... +.
T Consensus       251 ~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q-l~  329 (545)
T KOG1272|consen  251 AGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ-LH  329 (545)
T ss_pred             CCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccc-cc
Confidence            66788888999888999999999999999998888888888999999999999999999999999999999998664 44


Q ss_pred             EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEE
Q 005473          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS  669 (695)
Q Consensus       635 ~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWD  669 (695)
                      ++.. ...+..++|+..|  +| +++....|.||.
T Consensus       330 t~~t-p~~a~~ls~Sqkg--lL-A~~~G~~v~iw~  360 (545)
T KOG1272|consen  330 TYRT-PHPASNLSLSQKG--LL-ALSYGDHVQIWK  360 (545)
T ss_pred             eeec-CCCcccccccccc--ce-eeecCCeeeeeh
Confidence            4333 3457788888765  45 344456799995

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.78  E-value=1.7e-08  Score=107.70  Aligned_cols=134  Identities=27%  Similarity=0.274  Sum_probs=96.9

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec
Q 005473          559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG  638 (695)
Q Consensus       559 ~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~g  638 (695)
                      .+++|+.+|..|++|+.||++|||+......+.....|...|.++.|+|||.+|++-+.| ..+|||++++. ++.....
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~-~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA-ALARKTP  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc-hhhhcCC
Confidence            789999999999999999999999998888888888899999999999999999999999 89999999874 3544431


Q ss_pred             --CCCCeEEEEEecCC---Ce-EEEEEeCCCcEEEEECCCCe---EEE--EEecCCCcEEEEEEeCCC
Q 005473          639 --HSTTVMSLDFHPSK---ED-LLCSCDNNSEIRYWSINNGS---CAG--VFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       639 --h~~~V~sl~fspdg---~~-llaSgs~Dg~IriWDl~tg~---~v~--~~~~h~~~VtsVaf~sPd  695 (695)
                        -......+.|..|+   .. +++.-..-+.|+.||+..-.   .++  ....-...|++++. +++
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~V-S~d  292 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAV-SDD  292 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEE-cCC
Confidence              22234566677664   22 23333345667777764321   111  11122346777877 654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.78  E-value=3.4e-07  Score=101.67  Aligned_cols=141  Identities=19%  Similarity=0.171  Sum_probs=100.5

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEE-EeCCC--eEEE
Q 005473          550 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADR--TVRV  623 (695)
Q Consensus       550 ~l~~H~~~V~~v~fspdg~~LaSgs~D---g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaT-gs~Dg--tIrv  623 (695)
                      .+..+...+.+.+|+|||++|+.++.+   ..|++||+.+++... +..+.+.+.+++|+|+++.|+. .+.++  .|++
T Consensus       184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~  262 (417)
T TIGR02800       184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYV  262 (417)
T ss_pred             EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEE
Confidence            344566678999999999999887654   479999998876543 3345667778999999987754 44444  5999


Q ss_pred             EECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       624 WDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg--~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ||+.++.  ...+..+...+....|+|||+.+++++..++  .|++||+.+++.. .+..+...+..++| +|+
T Consensus       263 ~d~~~~~--~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~-spd  332 (417)
T TIGR02800       263 MDLDGKQ--LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSW-SPD  332 (417)
T ss_pred             EECCCCC--EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEE-CCC
Confidence            9998754  3445555555667899999998776665544  5888888776643 34444455677788 775

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.77  E-value=5e-07  Score=101.40  Aligned_cols=137  Identities=20%  Similarity=0.127  Sum_probs=88.4

Q ss_pred             CeEEEEEcCCCCEEEEEeC-----CCcEEEEECCCC---eEEEEecccCCCeEEEEEcCCCCEEEEEe-CCCeEEEE--E
Q 005473          557 KVESCHFSPDGKLLATGGH-----DKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVW--D  625 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~-----Dg~V~IWDl~t~---~~~~~l~~H~~~V~~v~~spdg~~LaTgs-~DgtIrvW--D  625 (695)
                      .....+|+|||+.|+..+.     |..+.+||+.++   .......++.+.+...+|+|||+.|+..+ .+|...||  +
T Consensus       232 ~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~  311 (428)
T PRK01029        232 NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQ  311 (428)
T ss_pred             CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEE
Confidence            3456899999998876553     233445777652   33333333334556789999999877665 46655555  5


Q ss_pred             CCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC--CcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       626 l~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D--g~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +.........+..+...+....|+|||+.+++++..+  ..|.+||+.++++.... .....+..+.| +||
T Consensus       312 ~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~w-SpD  381 (428)
T PRK01029        312 IDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSW-AID  381 (428)
T ss_pred             CcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEE-CCC
Confidence            5422222444555556778899999999877766544  36999999988765433 23345567888 875

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.77  E-value=3.7e-07  Score=102.41  Aligned_cols=134  Identities=17%  Similarity=0.105  Sum_probs=93.7

Q ss_pred             CeEEEEEcCCCCEEEEEe-CCCcEEEEE--CCC-CeEEEEecccCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCC
Q 005473          557 KVESCHFSPDGKLLATGG-HDKKAVLWC--TES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENP  629 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs-~Dg~V~IWD--l~t-~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~D---gtIrvWDl~t~  629 (695)
                      .+...+|+|||+.|+..+ .+|...||.  +.. +.....+..+...+....|+|||+.|+..+.+   ..|++||+.++
T Consensus       282 ~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g  361 (428)
T PRK01029        282 TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG  361 (428)
T ss_pred             CcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence            346789999999777665 467655654  432 23344555555677899999999988776543   36999999887


Q ss_pred             CeeEEEEecCCCCeEEEEEecCCCeEEEEEeC--CCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       630 ~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~--Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      +.  ..+......+.+..|+|||+.+++++..  +..|++||+..++...... ..+.+...+| +|
T Consensus       362 ~~--~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~g~~~~p~W-s~  424 (428)
T PRK01029        362 RD--YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-GSGEKRFPSW-GA  424 (428)
T ss_pred             Ce--EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCcccCcee-cC
Confidence            64  3444334467889999999988776654  3578899998877655443 4455677888 77

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.76  E-value=7.6e-08  Score=105.87  Aligned_cols=139  Identities=17%  Similarity=0.271  Sum_probs=108.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec------ccCCC-----eEEEEEcCCCCEEEEEeCCCeE
Q 005473          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE------EHTQW-----ITDVRFSPSLSRLATSSADRTV  621 (695)
Q Consensus       553 ~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~------~H~~~-----V~~v~~spdg~~LaTgs~DgtI  621 (695)
                      ...+.|++|..++...+|++|+.||.|-.||.++...+.++.      .|.+.     |+++.|+.+|-.+++|..+|.|
T Consensus       173 ~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v  252 (703)
T KOG2321|consen  173 TDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSV  252 (703)
T ss_pred             cccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcE
Confidence            345779999999999999999999999999998876665553      23333     9999999999999999999999


Q ss_pred             EEEECCCCCeeEEEEecCCCCeEEEEEecCC-CeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       622 rvWDl~t~~~~l~~~~gh~~~V~sl~fspdg-~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      .|||+++.+..+..-.+..-.|..++|.+.+ ...+++++ ...++|||-.+|+....+.... .|..++| -|
T Consensus       253 ~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt~-~lND~C~-~p  323 (703)
T KOG2321|consen  253 LIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIEPTS-DLNDFCF-VP  323 (703)
T ss_pred             EEEEcccCCceeecccCCccceeeecccccCCCceEEecc-hHHhhhcccccCCceeeccccC-CcCceee-ec
Confidence            9999999776444444445678999997652 23555655 6899999999999988886544 3677776 44

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.71  E-value=4.2e-07  Score=100.12  Aligned_cols=132  Identities=14%  Similarity=0.140  Sum_probs=102.1

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe--
Q 005473          560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT--  637 (695)
Q Consensus       560 ~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~--  637 (695)
                      .++++.-..-|++++....|+-++++.|..+.-+....+.+++|..++...+|++|+.||.|-+||.++... +.++.  
T Consensus       138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr-v~~l~~~  216 (703)
T KOG2321|consen  138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR-VGTLDAA  216 (703)
T ss_pred             cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhh-heeeecc
Confidence            455554444456666667788889999999999988889999999999999999999999999999998654 33322  


Q ss_pred             ----cCCC-----CeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe-cCCCcEEEEEEeCC
Q 005473          638 ----GHST-----TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-NFFESFVSVRVVQP  694 (695)
Q Consensus       638 ----gh~~-----~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~-~h~~~VtsVaf~sP  694 (695)
                          .|.+     .|+++.|+.+|= -++.|+.+|.|.|||+++.+++..-. +..-+|..+.| .+
T Consensus       217 ~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~-~~  281 (703)
T KOG2321|consen  217 SSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDW-QD  281 (703)
T ss_pred             cccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEcccCCceeecccCCccceeeecc-cc
Confidence                2333     399999998864 67799999999999999988776543 34557777777 44

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.70  E-value=9.8e-07  Score=98.83  Aligned_cols=141  Identities=19%  Similarity=0.171  Sum_probs=97.1

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEE-EEeCCC--eEEE
Q 005473          550 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADR--TVRV  623 (695)
Q Consensus       550 ~l~~H~~~V~~v~fspdg~~LaSgs~D---g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~La-Tgs~Dg--tIrv  623 (695)
                      .+..+...+....|+|||+.|+..+.+   ..|++||+.+++... +....+.+...+|+|+|+.|+ +.+.++  .|++
T Consensus       193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~  271 (430)
T PRK00178        193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYV  271 (430)
T ss_pred             EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEE
Confidence            344566778999999999988776643   368999998876543 333345566799999999876 444455  5888


Q ss_pred             EECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       624 WDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg--~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ||++++.  +..+..+...+....|+|||+.+++++..+|  .|++||+.+++....... .......+| +||
T Consensus       272 ~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~-~~~~~~~~~-Spd  341 (430)
T PRK00178        272 MDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV-GNYNARPRL-SAD  341 (430)
T ss_pred             EECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC-CCCccceEE-CCC
Confidence            8998765  3445556666778899999998887766554  577778877765433221 122234566 664

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.68  E-value=1.5e-06  Score=97.34  Aligned_cols=134  Identities=16%  Similarity=0.106  Sum_probs=87.9

Q ss_pred             CCeEEEEEcCCCCEEE-EEeCCC--cEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEECCCC
Q 005473          556 SKVESCHFSPDGKLLA-TGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWDTENP  629 (695)
Q Consensus       556 ~~V~~v~fspdg~~La-Sgs~Dg--~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~-Dg--tIrvWDl~t~  629 (695)
                      +.+.+..|+|||+.|+ +...++  .|++||+.+++.. .+..+...+....|+|+++.|+..+. ++  .|++||+.++
T Consensus       243 g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g  321 (430)
T PRK00178        243 GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG  321 (430)
T ss_pred             CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            3455789999999776 444455  5888899887654 45556666778899999998766553 33  5888888776


Q ss_pred             CeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       630 ~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg--~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      .....++.+  .......|+|+|+.++++...++  .|.+||+.+++.......  .......| +||
T Consensus       322 ~~~~lt~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~-spd  384 (430)
T PRK00178        322 RAERVTFVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSV-APN  384 (430)
T ss_pred             CEEEeecCC--CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceE-CCC
Confidence            532222222  33456789999998777665454  588899988764332222  12234567 765

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.67  E-value=1.5e-06  Score=96.55  Aligned_cols=137  Identities=18%  Similarity=0.172  Sum_probs=89.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEE-EeCCC--cEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEEC
Q 005473          553 ASTSKVESCHFSPDGKLLAT-GGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWDT  626 (695)
Q Consensus       553 ~H~~~V~~v~fspdg~~LaS-gs~Dg--~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~-Dg--tIrvWDl  626 (695)
                      .+.+.+.+++|+|||+.|+. .+.++  .|++||+.++... .+..+...+....|+|+++.|+.++. ++  .|++||+
T Consensus       231 ~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~  309 (417)
T TIGR02800       231 SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDA  309 (417)
T ss_pred             cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence            34455778999999997654 44444  5888999876543 44445555667899999998876654 33  5888888


Q ss_pred             CCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       627 ~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg--~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      .+++.  ..+..+...+..+.|+|+|+.++++...++  .|.+||+.++... .+..+ ..+...+| +|+
T Consensus       310 ~~~~~--~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~-spd  375 (417)
T TIGR02800       310 DGGEV--RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSF-APN  375 (417)
T ss_pred             CCCCE--EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceE-CCC
Confidence            86553  344445567788999999986665544322  7889998876443 23222 12234456 654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.65  E-value=8.2e-08  Score=103.95  Aligned_cols=149  Identities=23%  Similarity=0.330  Sum_probs=121.9

Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cccCCCeEEEEEcC--CCCEEEEEeCCCeEE
Q 005473          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTVR  622 (695)
Q Consensus       546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l-~~H~~~V~~v~~sp--dg~~LaTgs~DgtIr  622 (695)
                      .....|..|.+.|..|.|+..|..|++|+.|..|.+||...+..+..+ .+|...|..-.|.|  +...+++++.||.|+
T Consensus       133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr  212 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR  212 (559)
T ss_pred             hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence            344567889999999999999999999999999999999888877666 67998999889988  356799999999999


Q ss_pred             EEECCCCCeeE--EEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe---cCCC---cEEEEEEeCC
Q 005473          623 VWDTENPDYSL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---NFFE---SFVSVRVVQP  694 (695)
Q Consensus       623 vWDl~t~~~~l--~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~---~h~~---~VtsVaf~sP  694 (695)
                      +=.+...+.+.  +.+..|.+.|..++..|+.++-|.+|+.|+.|.-+|++.+.+...+.   .+..   ...+|+. +|
T Consensus       213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~-~P  291 (559)
T KOG1334|consen  213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAV-DP  291 (559)
T ss_pred             eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEec-CC
Confidence            99887655543  45667999999999999999999999999999999999875543333   3333   4466776 66


Q ss_pred             C
Q 005473          695 R  695 (695)
Q Consensus       695 d  695 (695)
                      .
T Consensus       292 ~  292 (559)
T KOG1334|consen  292 R  292 (559)
T ss_pred             C
Confidence            3

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.65  E-value=4.5e-08  Score=102.11  Aligned_cols=135  Identities=17%  Similarity=0.226  Sum_probs=105.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----eEEEEecccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCC
Q 005473          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-----TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN  628 (695)
Q Consensus       555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~-----~~~~~l~~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWDl~t  628 (695)
                      ++.|.++.|...+.+++.|+..|.|.++|+++.     .+...+ .|.+.|+++..-. ++.+|++++.+|+|++||++.
T Consensus       252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~  330 (425)
T KOG2695|consen  252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA  330 (425)
T ss_pred             chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence            455889999988999999999999999999864     344444 4899999998766 678999999999999999986


Q ss_pred             CCe--eEEEEecCCCCeEEEEE--ecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe----cCCCcEEEEEE
Q 005473          629 PDY--SLRTFTGHSTTVMSLDF--HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----NFFESFVSVRV  691 (695)
Q Consensus       629 ~~~--~l~~~~gh~~~V~sl~f--spdg~~llaSgs~Dg~IriWDl~tg~~v~~~~----~h~~~VtsVaf  691 (695)
                      .+.  .+..+.||...-.-+-+  ++... ++++++.|...|||.++.|..+.+++    .....+.+++|
T Consensus       331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~  400 (425)
T KOG2695|consen  331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAF  400 (425)
T ss_pred             hhcccceeeeecccccccccccccccccc-eEEEccCeeEEEEEecccCceeeccCCCCccccccccceeh
Confidence            441  27888998765444444  34444 67789999999999999999888877    33446677777

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.64  E-value=7.7e-07  Score=102.41  Aligned_cols=158  Identities=16%  Similarity=0.279  Sum_probs=119.6

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~  585 (695)
                      ++++++|..||.|.+|.-....            .+.   .....+.=|.++|++++|+++|.+|+|||..|.+.+|.+.
T Consensus       217 ~~~~Aa~d~dGrI~vw~d~~~~------------~~~---~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~  281 (792)
T KOG1963|consen  217 ERYLAAGDSDGRILVWRDFGSS------------DDS---ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE  281 (792)
T ss_pred             cceEEEeccCCcEEEEeccccc------------ccc---ccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence            3899999999999999443210            011   1235567799999999999999999999999999999999


Q ss_pred             CCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe--eEEEEe--------cCCCCeEEEEEecCCCeE
Q 005473          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFT--------GHSTTVMSLDFHPSKEDL  655 (695)
Q Consensus       586 t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~--~l~~~~--------gh~~~V~sl~fspdg~~l  655 (695)
                      +++ ..-+..-.++|..+.++||+.+.+....|..|.+....+...  .+..+.        ...+-.+.++++|.-+ .
T Consensus       282 T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~-~  359 (792)
T KOG1963|consen  282 TGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN-S  359 (792)
T ss_pred             CCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC-c
Confidence            988 444555678999999999999999999999999988754321  111111        1234567888999533 5


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEEe
Q 005473          656 LCSCDNNSEIRYWSINNGSCAGVFK  680 (695)
Q Consensus       656 laSgs~Dg~IriWDl~tg~~v~~~~  680 (695)
                      ++-++..|.|.+||+-+.+.+..+.
T Consensus       360 ~vln~~~g~vQ~ydl~td~~i~~~~  384 (792)
T KOG1963|consen  360 LVLNGHPGHVQFYDLYTDSTIYKLQ  384 (792)
T ss_pred             eeecCCCceEEEEeccccceeeeEE
Confidence            6678889999999998877665554

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.61  E-value=1.8e-06  Score=97.52  Aligned_cols=138  Identities=14%  Similarity=0.061  Sum_probs=92.3

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC-CC--eEEEE
Q 005473          551 IPASTSKVESCHFSPDGKLLATGGH-DK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVW  624 (695)
Q Consensus       551 l~~H~~~V~~v~fspdg~~LaSgs~-Dg--~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~-Dg--tIrvW  624 (695)
                      +..+...+...+|+|||+.|+..+. ++  .|+++|+.+++.... ..+.......+|+|+|++|+..+. ++  .|.++
T Consensus       301 lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~  379 (448)
T PRK04792        301 ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQ  379 (448)
T ss_pred             CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcCeeECCCCCEEEEEEecCCceEEEEE
Confidence            3444455678899999998766553 44  466667777765432 222233456789999998877654 34  46667


Q ss_pred             ECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc--EEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       625 Dl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~--IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      |+.++..  ..+... .......|+|||+.++++...++.  |+++|. +|.....+..+.+.+...+| +|
T Consensus       380 dl~~g~~--~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~W-sp  446 (448)
T PRK04792        380 DLETGAM--QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAW-SP  446 (448)
T ss_pred             ECCCCCe--EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCcc-CC
Confidence            8877653  333322 123356899999988887776654  777786 57777777777777888999 87

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.60  E-value=3.4e-07  Score=93.99  Aligned_cols=126  Identities=25%  Similarity=0.292  Sum_probs=96.1

Q ss_pred             eeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC-CCeEEEE-ecccCCCeEEEEEcC-CCCEEEEEeCCCe
Q 005473          545 FTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE-SFTVKST-LEEHTQWITDVRFSP-SLSRLATSSADRT  620 (695)
Q Consensus       545 ~~~v~~l~~H~~~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~-t~~~~~~-l~~H~~~V~~v~~sp-dg~~LaTgs~Dgt  620 (695)
                      ...+..+++|.-++..++|+. +.+++++|++|+.+.-||++ ..+.+.. .+-|+..|.+|.-+| .+.+|+||+.|-+
T Consensus       155 le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~  234 (339)
T KOG0280|consen  155 LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC  234 (339)
T ss_pred             eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccc
Confidence            344557889999999999976 45699999999999999998 4455544 567899999999887 4779999999999


Q ss_pred             EEEEECCCCCeeEEEEecCCCCeEEEEEecCCCe-EEEEEeCCCcEEEEECCC
Q 005473          621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-LLCSCDNNSEIRYWSINN  672 (695)
Q Consensus       621 IrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~-llaSgs~Dg~IriWDl~t  672 (695)
                      |++||+|+...++..-. -.+.|+.+.++|.-.. ++++|-..| .+|-++..
T Consensus       235 i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~  285 (339)
T KOG0280|consen  235 IRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSD  285 (339)
T ss_pred             eeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecc
Confidence            99999998776665433 2378999999996432 344444444 56666654

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.60  E-value=1.2e-06  Score=96.63  Aligned_cols=118  Identities=17%  Similarity=0.258  Sum_probs=90.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCC
Q 005473          554 STSKVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTEN  628 (695)
Q Consensus       554 H~~~V~~v~fspdg~~LaSg--s~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~D---gtIrvWDl~t  628 (695)
                      ..++|.++.|+++++-++++  -.--+|.|||++ +.++..+  -.++-.++-|+|.|++|+.++++   |.|-|||+.+
T Consensus       269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n  345 (566)
T KOG2315|consen  269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN  345 (566)
T ss_pred             CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence            36899999999999866554  346789999986 4566555  35677899999999999998875   6799999998


Q ss_pred             CCeeEEEEecCCCCeEEEEEecCCCeEEEEEeC-----CCcEEEEECCCCeEEEE
Q 005473          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----NSEIRYWSINNGSCAGV  678 (695)
Q Consensus       629 ~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~-----Dg~IriWDl~tg~~v~~  678 (695)
                      .+ ++..+...  ..+-++|+|||.+++.+.+.     |..|+||++. |..+..
T Consensus       346 ~K-~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~  396 (566)
T KOG2315|consen  346 RK-LIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHE  396 (566)
T ss_pred             hh-hccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Cceeeh
Confidence            44 57776653  45668999999977754443     7899999986 555543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.59  E-value=1.2e-06  Score=98.88  Aligned_cols=140  Identities=20%  Similarity=0.228  Sum_probs=94.6

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEE-EeCCCe--EEEE
Q 005473          551 IPASTSKVESCHFSPDGKLLATGGHD-K--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADRT--VRVW  624 (695)
Q Consensus       551 l~~H~~~V~~v~fspdg~~LaSgs~D-g--~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaT-gs~Dgt--IrvW  624 (695)
                      +..+...+.+..|+|||+.|+..+.+ +  .|++||+.+++... +....+.....+|+|||+.|+. .+.++.  |++|
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~  291 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVV  291 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence            34556678999999999988776543 3  58888998876533 2222334557899999997764 566664  8888


Q ss_pred             ECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc--EEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       625 Dl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~--IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      |+.++.  +..+..+...+...+|+|||+.+++++..++.  |+++|+.+++..... .+.......+| +||
T Consensus       292 dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~~~~-SpD  360 (448)
T PRK04792        292 DIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLGGSI-TPD  360 (448)
T ss_pred             ECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcCeeE-CCC
Confidence            988754  34555565667889999999988877765554  666677777644322 12222344677 775

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.59  E-value=6.5e-06  Score=90.59  Aligned_cols=165  Identities=16%  Similarity=0.140  Sum_probs=107.7

Q ss_pred             EEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 005473          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF  587 (695)
Q Consensus       508 ~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~  587 (695)
                      ++++-..++.|.+.+...                   .+.+..+......-..+.|++||+++++++.||.|.++|+.+.
T Consensus         8 ~~V~~~~~~~v~viD~~t-------------------~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~   68 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGAT-------------------NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG   68 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT--------------------SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS
T ss_pred             EEEEecCCCEEEEEECCC-------------------CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc
Confidence            345566678888885432                   2345555554443345789999999999999999999999999


Q ss_pred             eEEEEecccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCeeEEEEec-------CCCCeEEEEEecCCCeEEEEE
Q 005473          588 TVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTG-------HSTTVMSLDFHPSKEDLLCSC  659 (695)
Q Consensus       588 ~~~~~l~~H~~~V~~v~~spdg~~LaTgs-~DgtIrvWDl~t~~~~l~~~~g-------h~~~V~sl~fspdg~~llaSg  659 (695)
                      +.+.++.. .....++++++||+++++++ .++.|.++|.++.+. ++.+..       ..+.+..+..+|.++.++++-
T Consensus        69 ~~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~-v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l  146 (369)
T PF02239_consen   69 KVVATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP-VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL  146 (369)
T ss_dssp             SEEEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--E-EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE
T ss_pred             cEEEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccc-eeecccccccccccCCCceeEEecCCCCEEEEEE
Confidence            99998875 34567899999999998776 589999999998664 555432       235688888888888777676


Q ss_pred             eCCCcEEEEECCCCeEE--EEEecCCCcEEEEEEeCCC
Q 005473          660 DNNSEIRYWSINNGSCA--GVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       660 s~Dg~IriWDl~tg~~v--~~~~~h~~~VtsVaf~sPd  695 (695)
                      -+.+.|.+-|+...+.+  ..+.. ........| +|+
T Consensus       147 kd~~~I~vVdy~d~~~~~~~~i~~-g~~~~D~~~-dpd  182 (369)
T PF02239_consen  147 KDTGEIWVVDYSDPKNLKVTTIKV-GRFPHDGGF-DPD  182 (369)
T ss_dssp             TTTTEEEEEETTTSSCEEEEEEE---TTEEEEEE--TT
T ss_pred             ccCCeEEEEEeccccccceeeecc-ccccccccc-Ccc
Confidence            66688888898765433  33332 223345555 553

...

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.56  E-value=3e-07  Score=111.61  Aligned_cols=153  Identities=25%  Similarity=0.363  Sum_probs=119.5

Q ss_pred             CCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005473          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (695)
Q Consensus       504 ~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWD  583 (695)
                      +...+-.+|+.|+.|++|....+.                ...+.++  +....|+.+.|+..|+.+..+..||.+.+|-
T Consensus      2218 p~~~~Yltgs~dgsv~~~~w~~~~----------------~v~~~rt--~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2218 PSDPYYLTGSQDGSVRMFEWGHGQ----------------QVVCFRT--AGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred             CCCceEEecCCCceEEEEeccCCC----------------eEEEeec--cCcchhhhhhhcccCCceeeeccCCceeecc
Confidence            345788999999999999654331                1111122  2237799999999999999999999999999


Q ss_pred             CCCCeEEEEecccCCCeEEEEEcCCCCEEEEEe---CCCeEEEEECCCCC--eeEEEEecCCCCeEEEEEecCCCeEEEE
Q 005473          584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSS---ADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCS  658 (695)
Q Consensus       584 l~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs---~DgtIrvWDl~t~~--~~l~~~~gh~~~V~sl~fspdg~~llaS  658 (695)
                      +. .++......|.....+++|-.  ..+++++   .++.+.+||.--..  .++.  .+|.+.++++++-|... +|++
T Consensus      2280 ~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~q-llis 2353 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQ-LLIS 2353 (2439)
T ss_pred             cC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcce-EEEe
Confidence            87 566777788999999999974  6777764   47889999985433  2333  88999999999999977 7779


Q ss_pred             EeCCCcEEEEECCCCeEEEEEe
Q 005473          659 CDNNSEIRYWSINNGSCAGVFK  680 (695)
Q Consensus       659 gs~Dg~IriWDl~tg~~v~~~~  680 (695)
                      |+.+|.|++||++..+.++.+.
T Consensus      2354 ggr~G~v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2354 GGRKGEVCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred             cCCcCcEEEeehHHHHHHHHhh
Confidence            9999999999999777666554

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.56  E-value=1.5e-05  Score=87.80  Aligned_cols=154  Identities=14%  Similarity=0.161  Sum_probs=108.1

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTE  585 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs-~Dg~V~IWDl~  585 (695)
                      +++..++.|+.|.+++....                   +.+..++.... ..++++++||+++++++ .++.|.|+|.+
T Consensus        49 r~~yv~~rdg~vsviD~~~~-------------------~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~  108 (369)
T PF02239_consen   49 RYLYVANRDGTVSVIDLATG-------------------KVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAE  108 (369)
T ss_dssp             SEEEEEETTSEEEEEETTSS-------------------SEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETT
T ss_pred             CEEEEEcCCCeEEEEECCcc-------------------cEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEeccc
Confidence            67777788999999966433                   24445554443 58899999999998876 58999999999


Q ss_pred             CCeEEEEeccc-------CCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEE
Q 005473          586 SFTVKSTLEEH-------TQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC  657 (695)
Q Consensus       586 t~~~~~~l~~H-------~~~V~~v~~spdg~~LaTgs~-DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~lla  657 (695)
                      +.+.+..+...       ...+..|..+|....++..-. .+.|.+.|....+.................|+|+++++++
T Consensus       109 tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~v  188 (369)
T PF02239_consen  109 TLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLV  188 (369)
T ss_dssp             T--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEE
T ss_pred             cccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeee
Confidence            99999887532       346778888888776665555 4788888987765434344444566788999999998888


Q ss_pred             EEeCCCcEEEEECCCCeEEEEEe
Q 005473          658 SCDNNSEIRYWSINNGSCAGVFK  680 (695)
Q Consensus       658 Sgs~Dg~IriWDl~tg~~v~~~~  680 (695)
                      +...+..|-++|..+++.+..+.
T Consensus       189 a~~~sn~i~viD~~~~k~v~~i~  211 (369)
T PF02239_consen  189 AANGSNKIAVIDTKTGKLVALID  211 (369)
T ss_dssp             EEGGGTEEEEEETTTTEEEEEEE
T ss_pred             cccccceeEEEeeccceEEEEee
Confidence            88888899999999998887665

...

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.54  E-value=3.2e-07  Score=95.23  Aligned_cols=131  Identities=17%  Similarity=0.304  Sum_probs=103.1

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCCeeEEEEec
Q 005473          560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTG  638 (695)
Q Consensus       560 ~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTg-s~DgtIrvWDl~t~~~~l~~~~g  638 (695)
                      -|+|||+|++||+++.- .+.|-|..+.+....+.- -..|.-|.|..|..+++++ ..|+.|.+|++..++. ...+..
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-~ckIde   89 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-YCKIDE   89 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeeccee-EEEecc
Confidence            58899999999999855 788999887665433322 4567788999888777665 6788999999998776 444555


Q ss_pred             CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       639 h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ....+.+++|+|||++++.+..-|-.|.||.+.+.++.. ++..+..+..++| |||
T Consensus        90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f-~~d  144 (447)
T KOG4497|consen   90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAF-HPD  144 (447)
T ss_pred             CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEE-CCC
Confidence            567799999999999999999999999999999876554 3344455688888 886

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.53  E-value=5.9e-07  Score=95.69  Aligned_cols=85  Identities=22%  Similarity=0.350  Sum_probs=72.8

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005473          550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (695)
Q Consensus       550 ~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l-~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t  628 (695)
                      .+-||-..|+.|+|+||+++|+++..|..|||-.......+..+ -||+..|..+++-++ ..|++||.|++|++||+++
T Consensus       146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~s  224 (390)
T KOG3914|consen  146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITS  224 (390)
T ss_pred             hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEeccc
Confidence            34689999999999999999999999999999888766666665 579999999999765 5689999999999999999


Q ss_pred             CCeeEEEE
Q 005473          629 PDYSLRTF  636 (695)
Q Consensus       629 ~~~~l~~~  636 (695)
                      ++. +.++
T Consensus       225 gk~-L~t~  231 (390)
T KOG3914|consen  225 GKL-LDTC  231 (390)
T ss_pred             CCc-cccc
Confidence            875 4443

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.52  E-value=7e-07  Score=93.37  Aligned_cols=83  Identities=17%  Similarity=0.381  Sum_probs=74.0

Q ss_pred             eeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 005473          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV  623 (695)
Q Consensus       545 ~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~-~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrv  623 (695)
                      ...+.++.+|.+.|+|++|.+..++|++|..|..|.+||+...+ ....+.+|...|..+.+.+.-..+++++.||.|-+
T Consensus       187 ~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~  266 (404)
T KOG1409|consen  187 CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVV  266 (404)
T ss_pred             CceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEE
Confidence            35678899999999999999999999999999999999996544 34567899999999999888889999999999999


Q ss_pred             EECC
Q 005473          624 WDTE  627 (695)
Q Consensus       624 WDl~  627 (695)
                      ||++
T Consensus       267 w~mn  270 (404)
T KOG1409|consen  267 WNMN  270 (404)
T ss_pred             Eecc
Confidence            9986

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.47  E-value=1.4e-06  Score=103.07  Aligned_cols=148  Identities=18%  Similarity=0.219  Sum_probs=105.4

Q ss_pred             eeEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-------eEEEEecccCCCeEEEEEcCCCCEEEEEeC
Q 005473          546 TEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPSLSRLATSSA  617 (695)
Q Consensus       546 ~~v~~l~~H~~~V~~v~fspdg-~~LaSgs~Dg~V~IWDl~t~-------~~~~~l~~H~~~V~~v~~spdg~~LaTgs~  617 (695)
                      ..+..+..|...|..++.+++. .+++||+.||+|+|||++..       +...++....+.+.++.+.+.+..+|+++.
T Consensus      1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred             eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence            5677788899999999987765 89999999999999998642       233344434688999999999999999999


Q ss_pred             CCeEEEEECCCC--Ce----eEEEEecCC-CCeEEE-EEecC-CCeEEEEEeCCCcEEEEECCCCeEEEEEe--cCCCcE
Q 005473          618 DRTVRVWDTENP--DY----SLRTFTGHS-TTVMSL-DFHPS-KEDLLCSCDNNSEIRYWSINNGSCAGVFK--NFFESF  686 (695)
Q Consensus       618 DgtIrvWDl~t~--~~----~l~~~~gh~-~~V~sl-~fspd-g~~llaSgs~Dg~IriWDl~tg~~v~~~~--~h~~~V  686 (695)
                      ||.|++.+++.-  ..    +.+....+. +.|.++ +|... +..+++.+..-+.|..||++...-+..++  .-.+-|
T Consensus      1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred             CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence            999999999752  11    112222222 233333 34332 33477788889999999999766554444  334677


Q ss_pred             EEEEEeCC
Q 005473          687 VSVRVVQP  694 (695)
Q Consensus       687 tsVaf~sP  694 (695)
                      ++++. +|
T Consensus      1199 TSi~i-dp 1205 (1431)
T KOG1240|consen 1199 TSIVI-DP 1205 (1431)
T ss_pred             eEEEe-cC
Confidence            88876 65

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.41  E-value=6.2e-07  Score=90.73  Aligned_cols=149  Identities=17%  Similarity=0.330  Sum_probs=97.8

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecC-CCCCeEEEEEcCCCCEEEEEeC-----CCc
Q 005473          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA-STSKVESCHFSPDGKLLATGGH-----DKK  578 (695)
Q Consensus       505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~-H~~~V~~v~fspdg~~LaSgs~-----Dg~  578 (695)
                      ...-++++..|+.+.++......       ..           ...+.. |.+ -.+.++...+++|.++..     -+.
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~-------~~-----------~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~  160 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDL-------AL-----------MSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDN  160 (319)
T ss_pred             cCCceEecCCCceEEEEechHHH-------hh-----------hhhccccccc-ccccceeecccEEecCCcceEeeccc
Confidence            34567888899999888543210       00           000111 111 122223334444444331     133


Q ss_pred             EEEEECCCCeEEEEecccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEE
Q 005473          579 AVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC  657 (695)
Q Consensus       579 V~IWDl~t~~~~~~l~~H~~~V~~v~~spd-g~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~lla  657 (695)
                      .++|+++..+.+..-.--...|++++-+|. ..++++|+.||.|-+||.+....++..+..|+..++-|-|||..+.-|+
T Consensus       161 ~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lf  240 (319)
T KOG4714|consen  161 FYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLF  240 (319)
T ss_pred             eeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhee
Confidence            556666543322211112344999999995 5577888999999999999988888889999999999999998777777


Q ss_pred             EEeCCCcEEEEECCC
Q 005473          658 SCDNNSEIRYWSINN  672 (695)
Q Consensus       658 Sgs~Dg~IriWDl~t  672 (695)
                      +|++||.+..||..+
T Consensus       241 t~sedGslw~wdas~  255 (319)
T KOG4714|consen  241 TCSEDGSLWHWDAST  255 (319)
T ss_pred             EecCCCcEEEEcCCC
Confidence            999999999999764

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.40  E-value=1.9e-05  Score=80.52  Aligned_cols=180  Identities=11%  Similarity=0.061  Sum_probs=117.6

Q ss_pred             ccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC-CCEEEEE
Q 005473          495 LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATG  573 (695)
Q Consensus       495 la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspd-g~~LaSg  573 (695)
                      +.+.+..+-....+++.|+..+...+|.......                  ....-..|...|+-+.=.-| .--+..+
T Consensus        73 ~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~------------------h~~~cd~snn~v~~~~r~cd~~~~~~i~  134 (344)
T KOG4532|consen   73 MTFTPGSFINKCVTLADGGASGQFDLFACNTNDG------------------HLYQCDVSNNDVTLVKRYCDLKFPLNIA  134 (344)
T ss_pred             ccccchHhhccccEEEeccccceeeeecccCccc------------------ceeeecccccchhhhhhhcccccceeec
Confidence            4444555556667899999999999995543210                  11111112221221111111 1246677


Q ss_pred             eCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-eEE-EEecCCCCeEEEEEecC
Q 005473          574 GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLR-TFTGHSTTVMSLDFHPS  651 (695)
Q Consensus       574 s~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~-~l~-~~~gh~~~V~sl~fspd  651 (695)
                      +.|.++++.+++.+.....+.-..-.+.+++++++++++++.++...|..|.++...+ .++ .....++.-.+..|+..
T Consensus       135 sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~  214 (344)
T KOG4532|consen  135 SNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEN  214 (344)
T ss_pred             cCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccC
Confidence            8899999988865444333321112388999999999999999999999999976543 334 33344566788999987


Q ss_pred             CCeEEEEEeCCCcEEEEECCCC-eEEEEE----ecCCCcEEEEEEeCC
Q 005473          652 KEDLLCSCDNNSEIRYWSINNG-SCAGVF----KNFFESFVSVRVVQP  694 (695)
Q Consensus       652 g~~llaSgs~Dg~IriWDl~tg-~~v~~~----~~h~~~VtsVaf~sP  694 (695)
                      .. .+|++..||++.|||++.- .+....    ..|.+.|..+.| +|
T Consensus       215 ~~-~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~F-sl  260 (344)
T KOG4532|consen  215 DL-QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRF-SL  260 (344)
T ss_pred             cc-eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEe-cC
Confidence            55 8889999999999999863 333322    268899999999 75

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.39  E-value=5.5e-06  Score=86.81  Aligned_cols=150  Identities=23%  Similarity=0.370  Sum_probs=107.2

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC--
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT--  584 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl--  584 (695)
                      +.+.+|=..+++.-+....+               .......+....|...|..+.|+..-+++++++.|+.+.-...  
T Consensus        81 ~~L~vg~~ngtvtefs~sed---------------fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~  145 (404)
T KOG1409|consen   81 RRLYVGQDNGTVTEFALSED---------------FNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTES  145 (404)
T ss_pred             eEEEEEEecceEEEEEhhhh---------------hhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeecc
Confidence            45566666666666633211               1222344555567777777777766666666666654432211  


Q ss_pred             ---------------------------------------CCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 005473          585 ---------------------------------------ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (695)
Q Consensus       585 ---------------------------------------~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWD  625 (695)
                                                             ....++.++.+|.+.|++++|.+...+|++|..|..|.+||
T Consensus       146 ~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wd  225 (404)
T KOG1409|consen  146 GNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWD  225 (404)
T ss_pred             CCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEe
Confidence                                                   12334567789999999999999999999999999999999


Q ss_pred             CCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (695)
Q Consensus       626 l~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t  672 (695)
                      +.-.+.......+|...|..+...+.-. .+++++.||.|.+||++.
T Consensus       226 igg~~g~~~el~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  226 IGGRKGTAYELQGHNDKVQALSYAQHTR-QLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             ccCCcceeeeeccchhhhhhhhhhhhhe-eeeeccCCCeEEEEeccc
Confidence            9876665678889999999988776655 566999999999999974

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.39  E-value=9.2e-07  Score=64.21  Aligned_cols=39  Identities=36%  Similarity=0.548  Sum_probs=37.1

Q ss_pred             CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 005473          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (695)
Q Consensus       587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWD  625 (695)
                      ++++.++.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467889999999999999999999999999999999998

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=98.38  E-value=4.1e-07  Score=61.20  Aligned_cols=27  Identities=41%  Similarity=0.685  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHhcChHHHHHHHHhhc
Q 005473           10 KMLDVYIYDYLLKRKLHASAKAFQTEG   36 (695)
Q Consensus        10 ~~L~~yIydyl~k~~~~~tA~af~~e~   36 (695)
                      +.||.+|||||+++||.+||++|.+|+
T Consensus         1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    1 EELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            479999999999999999999999985

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.37  E-value=0.00019  Score=78.26  Aligned_cols=135  Identities=16%  Similarity=0.198  Sum_probs=92.9

Q ss_pred             CeEEEEEcCCCCEEEEEeC-CCcEEEEECC--CCeE--EEEecc----c--CCCeEEEEEcCCCCEEEEEeC-CCeEEEE
Q 005473          557 KVESCHFSPDGKLLATGGH-DKKAVLWCTE--SFTV--KSTLEE----H--TQWITDVRFSPSLSRLATSSA-DRTVRVW  624 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~-Dg~V~IWDl~--t~~~--~~~l~~----H--~~~V~~v~~spdg~~LaTgs~-DgtIrvW  624 (695)
                      .-..++|+|+++++++..+ +++|.+|++.  ++..  +..+..    .  ......|+++||+++|+++.. +.+|.+|
T Consensus       193 GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf  272 (345)
T PF10282_consen  193 GPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVF  272 (345)
T ss_dssp             SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEE
T ss_pred             CCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEE
Confidence            4688999999998877664 7889999987  4432  222211    1  125789999999999877764 6789999


Q ss_pred             ECCC--CCe-eEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC--CCCeEEEEEe-cCCCcEEEEEE
Q 005473          625 DTEN--PDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI--NNGSCAGVFK-NFFESFVSVRV  691 (695)
Q Consensus       625 Dl~t--~~~-~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl--~tg~~v~~~~-~h~~~VtsVaf  691 (695)
                      +++.  +.. .+..+.........+.|+|+|+++++++-.++.|.+|++  .+|.....-. ......+||.|
T Consensus       273 ~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  273 DLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             EECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             EEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence            9943  232 223333334558999999999999988888999999977  4676555443 33455678877

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.35  E-value=3.4e-06  Score=88.32  Aligned_cols=128  Identities=20%  Similarity=0.288  Sum_probs=94.3

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEeccc-----CCCeEEEEEcCC-CCEEEEEeCCCeEEE
Q 005473          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEH-----TQWITDVRFSPS-LSRLATSSADRTVRV  623 (695)
Q Consensus       553 ~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~---~~~~l~~H-----~~~V~~v~~spd-g~~LaTgs~DgtIrv  623 (695)
                      +|+.-|+++.++.|+..++++. |-.|.+|+++-..   .+..++.+     +..|++..|+|. ...++-++..|+||+
T Consensus       162 aHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL  240 (433)
T KOG1354|consen  162 AHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL  240 (433)
T ss_pred             cceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence            6888999999999999998876 8889999985322   22233333     456899999995 557788888999999


Q ss_pred             EECCCCCeeEE---------------EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC-CCCeEEEEEecCC
Q 005473          624 WDTENPDYSLR---------------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI-NNGSCAGVFKNFF  683 (695)
Q Consensus       624 WDl~t~~~~l~---------------~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl-~tg~~v~~~~~h~  683 (695)
                      -|++....|..               .|.+--+.|..+.|+++|++++ +-+ =-+|++||+ ...+++.++..|.
T Consensus       241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryil-sRD-yltvk~wD~nme~~pv~t~~vh~  314 (433)
T KOG1354|consen  241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYIL-SRD-YLTVKLWDLNMEAKPVETYPVHE  314 (433)
T ss_pred             eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEE-Eec-cceeEEEeccccCCcceEEeehH
Confidence            99995443321               1222235688999999999555 554 268999999 5677888887774

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.34  E-value=2e-06  Score=94.10  Aligned_cols=159  Identities=16%  Similarity=0.165  Sum_probs=112.6

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      +-+++++.|.+|++|......++..            +..+-.++..|+.+|.++.|-.+.++++++  ||.|.+||---
T Consensus       748 NSFiSASkDKTVKLWSik~EgD~~~------------tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFi  813 (1034)
T KOG4190|consen  748 NSFISASKDKTVKLWSIKPEGDEIG------------TSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFI  813 (1034)
T ss_pred             cceeeccCCceEEEEEeccccCccc------------cceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccc
Confidence            5568899999999997765544321            223556788999999999999999888876  78899999866


Q ss_pred             CeEEEEec--ccCCCeEEEEEcCC--CCEEEEE-eCCCeEEEEECCCCCeeE--EEE--ecCCCCeEEEEEecCCCeEEE
Q 005473          587 FTVKSTLE--EHTQWITDVRFSPS--LSRLATS-SADRTVRVWDTENPDYSL--RTF--TGHSTTVMSLDFHPSKEDLLC  657 (695)
Q Consensus       587 ~~~~~~l~--~H~~~V~~v~~spd--g~~LaTg-s~DgtIrvWDl~t~~~~l--~~~--~gh~~~V~sl~fspdg~~lla  657 (695)
                      ++++..+.  ...+.+..|..-++  ..+++.| +...+|+++|.+..++..  ++.  .+..+.+.+++..+.|++ ++
T Consensus       814 gr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~-lA  892 (1034)
T KOG4190|consen  814 GRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNK-LA  892 (1034)
T ss_pred             cchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcch-hh
Confidence            66654321  12333444444443  3344444 668899999999876421  222  344567899999999885 55


Q ss_pred             EEeCCCcEEEEECCCCeEEEEEe
Q 005473          658 SCDNNSEIRYWSINNGSCAGVFK  680 (695)
Q Consensus       658 Sgs~Dg~IriWDl~tg~~v~~~~  680 (695)
                      .+-.+|+|-+.|.++|+.+..+.
T Consensus       893 a~LSnGci~~LDaR~G~vINswr  915 (1034)
T KOG4190|consen  893 AALSNGCIAILDARNGKVINSWR  915 (1034)
T ss_pred             HHhcCCcEEEEecCCCceeccCC
Confidence            77779999999999999877543

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.34  E-value=1.6e-06  Score=94.08  Aligned_cols=145  Identities=19%  Similarity=0.259  Sum_probs=98.3

Q ss_pred             EEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEe---ccc---------------------------
Q 005473          548 FQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTL---EEH---------------------------  596 (695)
Q Consensus       548 v~~l~~H~~~V~~v~fspdg~-~LaSgs~Dg~V~IWDl~t~~~~~~l---~~H---------------------------  596 (695)
                      .+.+..|.++|.-++.-|+.. .|.+++.|+.|.-+|++...+...+   +.+                           
T Consensus       225 t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dq  304 (559)
T KOG1334|consen  225 TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQ  304 (559)
T ss_pred             ceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhh
Confidence            455667999999999998654 6889999999998888654321111   000                           


Q ss_pred             -------------------------------CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC--C----------CeeE
Q 005473          597 -------------------------------TQWITDVRFSPSLSRLATSSADRTVRVWDTEN--P----------DYSL  633 (695)
Q Consensus       597 -------------------------------~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t--~----------~~~l  633 (695)
                                                     .-.|+|++|+.++.-|+++-.|-.|++|.-.-  +          ....
T Consensus       305 f~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k  384 (559)
T KOG1334|consen  305 FARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVK  384 (559)
T ss_pred             hhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccc
Confidence                                           12366777776555555555566677763321  1          1111


Q ss_pred             EEEecCCC--CeEEEEE-ecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          634 RTFTGHST--TVMSLDF-HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       634 ~~~~gh~~--~V~sl~f-spdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      .+++||..  .|..|-| -|... ++++|+.-|.|.|||-.+++.|..+++-...|.||.= ||
T Consensus       385 ~vYKGHrN~~TVKgVNFfGPrsE-yVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEp-HP  446 (559)
T KOG1334|consen  385 RVYKGHRNSRTVKGVNFFGPRSE-YVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEP-HP  446 (559)
T ss_pred             hhhcccccccccceeeeccCccc-eEEecCccceEEEEecchhHHHHHhhcccceEeccCC-CC
Confidence            33777763  3666655 56554 7889999999999999999999998887778888876 66

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.34  E-value=1.3e-06  Score=95.57  Aligned_cols=143  Identities=14%  Similarity=0.213  Sum_probs=103.0

Q ss_pred             eEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCC
Q 005473          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR  619 (695)
Q Consensus       547 ~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t-------~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~Dg  619 (695)
                      .+..+.||..+|..+.--.+.+-+++++.|++|++|.++.       ..|..++..|+.+|.++.|-.+-+.++++  ||
T Consensus       727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~  804 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG  804 (1034)
T ss_pred             eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence            3466789999999998877888899999999999998853       34778889999999999999887777665  89


Q ss_pred             eEEEEECCCCCeeEEEEe-cCCCCeEEEEEec--CCCeEEEEEeCCCcEEEEECCCCeEEEEEe-----cCCCcEEEEEE
Q 005473          620 TVRVWDTENPDYSLRTFT-GHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----NFFESFVSVRV  691 (695)
Q Consensus       620 tIrvWDl~t~~~~l~~~~-gh~~~V~sl~fsp--dg~~llaSgs~Dg~IriWDl~tg~~v~~~~-----~h~~~VtsVaf  691 (695)
                      .|++||.--++....... ...+.+..+..-+  +...+++.|+...+|+++|.+.++.+..++     +....+.+++.
T Consensus       805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV  884 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV  884 (1034)
T ss_pred             cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence            999999865553211111 1122333333323  344455556889999999999988776666     33345667765

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.33  E-value=1.7e-06  Score=62.74  Aligned_cols=38  Identities=29%  Similarity=0.543  Sum_probs=36.1

Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005473          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (695)
Q Consensus       546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWD  583 (695)
                      +++.++.+|.+.|++|+|+|++.+|++|+.|+.|+|||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            46788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.29  E-value=1.5e-06  Score=98.07  Aligned_cols=125  Identities=20%  Similarity=0.341  Sum_probs=102.2

Q ss_pred             EEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCC-eEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 005473          549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (695)
Q Consensus       549 ~~l~~H~~~V~~v~fspdg~-~LaSgs~Dg~V~IWDl~t~-~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl  626 (695)
                      ..+.+|+..|+.+.|++... .+++++.|..|..||++.- .++..+..-...-..|+|+.....+...+..+.|+|||+
T Consensus       108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~  187 (1081)
T KOG0309|consen  108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDL  187 (1081)
T ss_pred             EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEec
Confidence            45679999999999998654 8999999999999999864 345555544566778999886555666667788999999


Q ss_pred             CCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 005473          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG  673 (695)
Q Consensus       627 ~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg  673 (695)
                      +.+..++..+++|...|.+++|..-....+.+++.||+|++||..+.
T Consensus       188 r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS  234 (1081)
T KOG0309|consen  188 RKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS  234 (1081)
T ss_pred             cCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence            99998899999999999999997654445679999999999999754

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.25  E-value=0.00041  Score=75.65  Aligned_cols=150  Identities=15%  Similarity=0.209  Sum_probs=99.5

Q ss_pred             eeeEEEecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCC-CeEEEE--ecc-----------cCCCeEEEEEcCCC
Q 005473          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTES-FTVKST--LEE-----------HTQWITDVRFSPSL  609 (695)
Q Consensus       545 ~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~-Dg~V~IWDl~t-~~~~~~--l~~-----------H~~~V~~v~~spdg  609 (695)
                      +..+............+++++++++|+++.. +|.|.++++.. +.....  +..           .....+++.|+|++
T Consensus        76 L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg  155 (345)
T PF10282_consen   76 LTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG  155 (345)
T ss_dssp             EEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS
T ss_pred             eEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC
Confidence            3444444433344567999999999999985 89999999976 443322  111           13457899999999


Q ss_pred             CEEEEEeC-CCeEEEEECCCCCeeE---EEEe-cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC--CCe--EEEEEe
Q 005473          610 SRLATSSA-DRTVRVWDTENPDYSL---RTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--NGS--CAGVFK  680 (695)
Q Consensus       610 ~~LaTgs~-DgtIrvWDl~t~~~~l---~~~~-gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~--tg~--~v~~~~  680 (695)
                      ++|++... ...|++|+++.....+   ..+. .....-..+.|+|+++.+++.+..++.|.+|++.  ++.  .+..+.
T Consensus       156 ~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~  235 (345)
T PF10282_consen  156 RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS  235 (345)
T ss_dssp             SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE
T ss_pred             CEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEee
Confidence            98877643 4579999998755212   2222 3345678999999999999999999999999998  453  233333


Q ss_pred             c----C--CCcEEEEEEeCCC
Q 005473          681 N----F--FESFVSVRVVQPR  695 (695)
Q Consensus       681 ~----h--~~~VtsVaf~sPd  695 (695)
                      .    .  ......|++ +||
T Consensus       236 ~~~~~~~~~~~~~~i~i-spd  255 (345)
T PF10282_consen  236 TLPEGFTGENAPAEIAI-SPD  255 (345)
T ss_dssp             SCETTSCSSSSEEEEEE--TT
T ss_pred             eccccccccCCceeEEE-ecC
Confidence            1    1  124678888 876

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.25  E-value=8.4e-06  Score=85.44  Aligned_cols=176  Identities=16%  Similarity=0.243  Sum_probs=113.3

Q ss_pred             CCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCe
Q 005473          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV  558 (695)
Q Consensus       479 s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V  558 (695)
                      .+-++.+.|..+|               .++++|..+|.|.+|--.....+...+.... ......+..++.+. -..+|
T Consensus        25 adiis~vef~~~G---------------e~LatGdkgGRVv~f~r~~~~~~ey~~~t~f-qshepEFDYLkSle-ieEKi   87 (433)
T KOG1354|consen   25 ADIISAVEFDHYG---------------ERLATGDKGGRVVLFEREKLYKGEYNFQTEF-QSHEPEFDYLKSLE-IEEKI   87 (433)
T ss_pred             hcceeeEEeeccc---------------ceEeecCCCCeEEEeecccccccceeeeeee-eccCcccchhhhhh-hhhhh
Confidence            3455666666655               7899999999999993322211100000000 00011111111111 13468


Q ss_pred             EEEEEcCCCC--EEEEEeCCCcEEEEECCCCe-----------------------------------EEEEe-cccCCCe
Q 005473          559 ESCHFSPDGK--LLATGGHDKKAVLWCTESFT-----------------------------------VKSTL-EEHTQWI  600 (695)
Q Consensus       559 ~~v~fspdg~--~LaSgs~Dg~V~IWDl~t~~-----------------------------------~~~~l-~~H~~~V  600 (695)
                      ..+.|.+++.  .++..+.|++|++|-+....                                   |.+++ .+|+--|
T Consensus        88 nkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhi  167 (433)
T KOG1354|consen   88 NKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHI  167 (433)
T ss_pred             hhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEe
Confidence            8999998765  56677889999999764211                                   11111 3578889


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE--EEEecC-----CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473          601 TDVRFSPSLSRLATSSADRTVRVWDTENPDYSL--RTFTGH-----STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (695)
Q Consensus       601 ~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l--~~~~gh-----~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t  672 (695)
                      .+|.++.|...++++ +|=.|-+|++.-...+.  ..+..+     ..-|++..|||....+++..+..|+||+.|+|.
T Consensus       168 NSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~  245 (433)
T KOG1354|consen  168 NSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ  245 (433)
T ss_pred             eeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence            999999998888887 58889999987544332  222222     245899999999988999999999999999984

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.20  E-value=2.1e-06  Score=96.98  Aligned_cols=166  Identities=14%  Similarity=0.199  Sum_probs=108.9

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~  585 (695)
                      ...+++++.|..|..|+.....                  .++.....-......|+|+-..-.+.+.++.+.|+|||.+
T Consensus       127 pdVlatcsvdt~vh~wd~rSp~------------------~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r  188 (1081)
T KOG0309|consen  127 PDVLATCSVDTYVHAWDMRSPH------------------RPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLR  188 (1081)
T ss_pred             CcceeeccccccceeeeccCCC------------------cceeeeecccccCceeeecccCcchhhhccCCceEEEecc
Confidence            3788999999999999664321                  2233333333346789998755555556778889999997


Q ss_pred             CC-eEEEEecccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEe-CC
Q 005473          586 SF-TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NN  662 (695)
Q Consensus       586 t~-~~~~~l~~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs-~D  662 (695)
                      .+ .++..+++|...|+.++|.. ....+.+++.|++|++||......--.........|+.-.|-|-|+.++.--. .+
T Consensus       189 ~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~  268 (1081)
T KOG0309|consen  189 KGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGG  268 (1081)
T ss_pred             CCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCC
Confidence            54 57788999999999999976 35678899999999999997543211111223345666666665543321111 11


Q ss_pred             CcEEE---------EECCC-CeEEEEEecCCCcEEEE
Q 005473          663 SEIRY---------WSINN-GSCAGVFKNFFESFVSV  689 (695)
Q Consensus       663 g~Iri---------WDl~t-g~~v~~~~~h~~~VtsV  689 (695)
                      ..|.+         |++.+ ..+|.+|.||++.|...
T Consensus       269 n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eF  305 (1081)
T KOG0309|consen  269 NMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEF  305 (1081)
T ss_pred             eeeeeccccchhhhhccccCCcceeeecCcchHHHHH
Confidence            23444         44333 46899999999877543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.20  E-value=7.8e-05  Score=76.13  Aligned_cols=123  Identities=17%  Similarity=0.139  Sum_probs=94.9

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEE-EecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 005473          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~--~~~-~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~  634 (695)
                      +.++++++|++++++.+....|..|.++...  .+. .+...++.=.+..|+.....+|++..||++.|||++....+..
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~  240 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA  240 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence            7899999999999999999999999886432  233 2233345557889999889999999999999999997654432


Q ss_pred             ----EEecCCCCeEEEEEecCCC-eEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473          635 ----TFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFK  680 (695)
Q Consensus       635 ----~~~gh~~~V~sl~fspdg~-~llaSgs~Dg~IriWDl~tg~~v~~~~  680 (695)
                          +...|.+.+..+.|++-|. .||+..-.-+.+++.|+++++-...+.
T Consensus       241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~  291 (344)
T KOG4532|consen  241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV  291 (344)
T ss_pred             hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence                3346889999999998654 255556667899999999986554443

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.17  E-value=7e-05  Score=81.42  Aligned_cols=125  Identities=18%  Similarity=0.221  Sum_probs=100.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 005473          553 ASTSKVESCHFSPDGKLLATGGHDK-KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (695)
Q Consensus       553 ~H~~~V~~v~fspdg~~LaSgs~Dg-~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~  631 (695)
                      +|.+.|.-..+.-+++-++.|..|| .+-|||.++++.. .+++.-+.|.++..+++|++++.+.....|.+.|++++..
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv  435 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV  435 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence            6777799999988999999999999 8999999987765 4555678999999999999999999888999999999875


Q ss_pred             eEEEEecCCCCeEEEEEecCCCeEEEEEeCCC----cEEEEECCCCeEEEEEe
Q 005473          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNGSCAGVFK  680 (695)
Q Consensus       632 ~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg----~IriWDl~tg~~v~~~~  680 (695)
                      .+ .-....+-|+..+|||++++ +|-+--+|    .|+++|+..++....-.
T Consensus       436 ~~-idkS~~~lItdf~~~~nsr~-iAYafP~gy~tq~Iklydm~~~Kiy~vTT  486 (668)
T COG4946         436 RL-IDKSEYGLITDFDWHPNSRW-IAYAFPEGYYTQSIKLYDMDGGKIYDVTT  486 (668)
T ss_pred             eE-ecccccceeEEEEEcCCcee-EEEecCcceeeeeEEEEecCCCeEEEecC
Confidence            22 22334577999999999884 44544444    69999999887665544

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.15  E-value=0.00022  Score=79.87  Aligned_cols=134  Identities=13%  Similarity=0.054  Sum_probs=85.1

Q ss_pred             CCCCeEEEEEcCCCCEEEE-EeCC--CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEECC
Q 005473          554 STSKVESCHFSPDGKLLAT-GGHD--KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWDTE  627 (695)
Q Consensus       554 H~~~V~~v~fspdg~~LaS-gs~D--g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~-Dg--tIrvWDl~  627 (695)
                      ..+.+.+..|+|||+.|+. .+.+  ..|.++|+.++... .+..+.+......|+|||+.|+..+. .+  .|+++|+.
T Consensus       231 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~  309 (419)
T PRK04043        231 SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN  309 (419)
T ss_pred             CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECC
Confidence            3445667889999986654 3333  56888898877644 44444444456789999987766553 33  58888888


Q ss_pred             CCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC--------CcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       628 t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D--------g~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ++.....++.+.  .  ...|+|||+.+++++..+        ..|.+.|+.++.. ..+..+ .......| +||
T Consensus       310 ~g~~~rlt~~g~--~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~-SPD  378 (419)
T PRK04043        310 SGSVEQVVFHGK--N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRF-SSD  378 (419)
T ss_pred             CCCeEeCccCCC--c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEE-CCC
Confidence            765422222222  1  348999999888777643        3688889887754 333322 12235778 775

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.14  E-value=2.9e-06  Score=85.99  Aligned_cols=180  Identities=12%  Similarity=0.152  Sum_probs=108.0

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      ..++++..++.+.++.     .++......|....+  ....+++.-|.++-.+-..+-.++-++++..||.+.+++.+.
T Consensus        48 ~~lf~~e~~~~~ss~g-----~~r~~~~~~~~rt~~--i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~  120 (319)
T KOG4714|consen   48 YILFTGETSSQIISLG-----KGRGRCISLWERDDG--IDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDK  120 (319)
T ss_pred             heeecccchhheeeec-----cceEEEechhhcccC--cCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechH
Confidence            3445555555555552     222222333332222  233444555555555555555677899999999999999875


Q ss_pred             CeEE-EEecccCCCeEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEe
Q 005473          587 FTVK-STLEEHTQWITDVRFSPSLSRLATSSA-----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (695)
Q Consensus       587 ~~~~-~~l~~H~~~V~~v~~spdg~~LaTgs~-----DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs  660 (695)
                      ...+ +.+..-...-.+.++...+.+|.++..     -+..+.|+++..+..+..... ...|++++-+|....++++|+
T Consensus       121 ~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~qq~~v~cgt  199 (319)
T KOG4714|consen  121 DLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA-LDAVTALCSHPAQQHLVCCGT  199 (319)
T ss_pred             HHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccc-cccchhhhCCcccccEEEEec
Confidence            2111 111111111223333333444444421     234677777653321212222 234999999999999999999


Q ss_pred             CCCcEEEEECCCC-eEEEEEecCCCcEEEEEEeCCC
Q 005473          661 NNSEIRYWSINNG-SCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       661 ~Dg~IriWDl~tg-~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      .||.|.+||.+.. .++..+++|+.+|+.|-| ||.
T Consensus       200 ~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~F-Hpk  234 (319)
T KOG4714|consen  200 DDGIVGLWDARNVAMPVSLLKAHKAEIWEVHF-HPK  234 (319)
T ss_pred             CCCeEEEEEcccccchHHHHHHhhhhhhheec-cCC
Confidence            9999999999986 456778899999999999 984

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.13  E-value=0.00019  Score=80.51  Aligned_cols=109  Identities=13%  Similarity=0.163  Sum_probs=77.8

Q ss_pred             EEEEEcC-CCCEEEEE----eCCCcE----EEEECCCCeEEE---EecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 005473          559 ESCHFSP-DGKLLATG----GHDKKA----VLWCTESFTVKS---TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (695)
Q Consensus       559 ~~v~fsp-dg~~LaSg----s~Dg~V----~IWDl~t~~~~~---~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl  626 (695)
                      .++.|+. +...|.+.    +.+|.+    ++|++...+..+   +-....+.|.|++++|+...|+.|+.||+|.+||.
T Consensus       209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~  288 (545)
T PF11768_consen  209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDT  288 (545)
T ss_pred             EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEc
Confidence            6677766 33334432    334443    456654433221   11346788999999999999999999999999999


Q ss_pred             CCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 005473          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (695)
Q Consensus       627 ~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~  671 (695)
                      ..+.   ..+..+.-.++.++|||+|. +++.|+..|.|.+||+.
T Consensus       289 ~~~~---t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  289 TRGV---TLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMA  329 (545)
T ss_pred             CCCe---eeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEee
Confidence            8642   33334445678999999998 77799989999999986

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.13  E-value=0.00021  Score=88.53  Aligned_cols=116  Identities=19%  Similarity=0.177  Sum_probs=84.5

Q ss_pred             CeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEecc-------------c--------CCCeEEEEEcCCCCEEEE
Q 005473          557 KVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEE-------------H--------TQWITDVRFSPSLSRLAT  614 (695)
Q Consensus       557 ~V~~v~fspdg~~La-Sgs~Dg~V~IWDl~t~~~~~~l~~-------------H--------~~~V~~v~~spdg~~LaT  614 (695)
                      ....|+|+|+++.|+ +-+.++.|++||+.++.......+             +        -.....|+|+++|.++++
T Consensus       741 ~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVA  820 (1057)
T PLN02919        741 QPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVA  820 (1057)
T ss_pred             CccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEE
Confidence            356799999998555 445579999999987653221110             0        012358899999998888


Q ss_pred             EeCCCeEEEEECCCCCeeEEEEecC--------------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeE
Q 005473          615 SSADRTVRVWDTENPDYSLRTFTGH--------------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC  675 (695)
Q Consensus       615 gs~DgtIrvWDl~t~~~~l~~~~gh--------------~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~  675 (695)
                      -..+++|++||..++..  .++.+.              -.....|+++++|. ++++.+.++.|++||+.+++.
T Consensus       821 Ds~N~rIrviD~~tg~v--~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        821 DSYNHKIKKLDPATKRV--TTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             ECCCCEEEEEECCCCeE--EEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEECCCCEEEEEECCCCcc
Confidence            88899999999987543  333221              12467899999997 777888899999999998765

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.11  E-value=5.4e-06  Score=101.21  Aligned_cols=119  Identities=17%  Similarity=0.319  Sum_probs=93.5

Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCC--Ce-EEEEecccCCCeEEEEEcCCCCEEEEEeCCC
Q 005473          546 TEFQLIPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTES--FT-VKSTLEEHTQWITDVRFSPSLSRLATSSADR  619 (695)
Q Consensus       546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs~---Dg~V~IWDl~t--~~-~~~~l~~H~~~V~~v~~spdg~~LaTgs~Dg  619 (695)
                      +++...+.|......+.|-.  .++++++.   ++.|++||.--  .. ++.  ..|.+.++++++.|...+|++|+.+|
T Consensus      2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred             cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcC
Confidence            45666778888888888875  67777764   68999999632  22 333  78999999999999999999999999


Q ss_pred             eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473          620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  680 (695)
Q Consensus       620 tIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~  680 (695)
                      .|+|||++.... +.++..         ++  .+.+|++|+..|.|+||++.....+.++.
T Consensus      2359 ~v~l~D~rqrql-~h~~~~---------~~--~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQL-RHTFQA---------LD--TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             cEEEeehHHHHH-HHHhhh---------hh--hhheeeccCcccceEEEEccccchhhcCc
Confidence            999999997543 444442         34  34578899999999999999887777766

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.09  E-value=1.2e-05  Score=83.33  Aligned_cols=128  Identities=20%  Similarity=0.290  Sum_probs=92.3

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC---eEEEEeccc-----CCCeEEEEEcCC-CCEEEEEeCCCeEE
Q 005473          552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEH-----TQWITDVRFSPS-LSRLATSSADRTVR  622 (695)
Q Consensus       552 ~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~---~~~~~l~~H-----~~~V~~v~~spd-g~~LaTgs~DgtIr  622 (695)
                      ..|..-|.++.|+.|...++++. |-.|.+|+++-.   -.+..++.|     +..|++..|+|. ...+.-++..|.|+
T Consensus       169 NaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik  247 (460)
T COG5170         169 NAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK  247 (460)
T ss_pred             ccceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence            46888899999999999888865 788999987532   223344555     356889999996 44666777899999


Q ss_pred             EEECCCCCeeE---------------EEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-CeEEEEEecC
Q 005473          623 VWDTENPDYSL---------------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKNF  682 (695)
Q Consensus       623 vWDl~t~~~~l---------------~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t-g~~v~~~~~h  682 (695)
                      +-|++....|.               ..+.+-.+.|..+.|+++|++++ +-+ =-+|+|||++. ..|+.++.-|
T Consensus       248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIl-sRd-yltvkiwDvnm~k~pikTi~~h  321 (460)
T COG5170         248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYIL-SRD-YLTVKIWDVNMAKNPIKTIPMH  321 (460)
T ss_pred             ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEE-Eec-cceEEEEecccccCCceeechH
Confidence            99998543332               11223345688899999998444 555 35899999985 4688887655

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.06  E-value=0.00039  Score=77.29  Aligned_cols=129  Identities=20%  Similarity=0.234  Sum_probs=92.5

Q ss_pred             EEEEEcCCCC-E--EEEEeCCC---------cEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEE--eCCCeEEEE
Q 005473          559 ESCHFSPDGK-L--LATGGHDK---------KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS--SADRTVRVW  624 (695)
Q Consensus       559 ~~v~fspdg~-~--LaSgs~Dg---------~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTg--s~DgtIrvW  624 (695)
                      ..+.|++-|. +  |++...|+         ++++.++.+..++..+. ..++|+++.|+|+++.++++  -.-.+|.||
T Consensus       221 vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtif  299 (566)
T KOG2315|consen  221 VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIF  299 (566)
T ss_pred             eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEE
Confidence            3577877766 2  33444454         57788887555555554 47999999999999876554  346689999


Q ss_pred             ECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEe--CCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       625 Dl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs--~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      |++. . ++..+  ..+.=.++-|+|.|..++++|-  --|.|-|||+.+.+++..+++...  +-+.| +||
T Consensus       300 nlr~-~-~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW-~Pd  365 (566)
T KOG2315|consen  300 NLRG-K-PVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEW-SPD  365 (566)
T ss_pred             cCCC-C-EeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEE-cCC
Confidence            9984 3 34444  3466688999999996665553  348999999999999999986542  55788 886

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.04  E-value=5.3e-05  Score=87.00  Aligned_cols=148  Identities=10%  Similarity=0.094  Sum_probs=105.8

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005473          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (695)
Q Consensus       505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl  584 (695)
                      +++|++-|+.+|.|+++......                     ++...|...      ..+|++++||+.||+|.|-.+
T Consensus        48 ~~~~~~~GtH~g~v~~~~~~~~~---------------------~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl  100 (846)
T KOG2066|consen   48 HDKFFALGTHRGAVYLTTCQGNP---------------------KTNFDHSSS------ILEGEYVASCSDDGKVVIGSL  100 (846)
T ss_pred             hcceeeeccccceEEEEecCCcc---------------------ccccccccc------ccCCceEEEecCCCcEEEeec
Confidence            44899999999999998553221                     122233332      668999999999999999998


Q ss_pred             CCCeEEEEecccCCCeEEEEEcCC-----CCEEEEEeCCCeEEEEECCCCCeeE-EEEecCCCCeEEEEEecCCCeEEEE
Q 005473          585 ESFTVKSTLEEHTQWITDVRFSPS-----LSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCS  658 (695)
Q Consensus       585 ~t~~~~~~l~~H~~~V~~v~~spd-----g~~LaTgs~DgtIrvWDl~t~~~~l-~~~~gh~~~V~sl~fspdg~~llaS  658 (695)
                      -+.+...++.- ..++..|+++|+     .+.+++|+.-| +.++.-+--+... ..+..-.+.|.++.|.-+   ++|=
T Consensus       101 ~~~~~~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~---lIAW  175 (846)
T KOG2066|consen  101 FTDDEITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN---LIAW  175 (846)
T ss_pred             cCCccceeEec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc---EEEE
Confidence            88777766653 568999999997     56899999888 7777543222111 134455689999999843   7766


Q ss_pred             EeCCCcEEEEECCCCeEEEEEecCCCc
Q 005473          659 CDNNSEIRYWSINNGSCAGVFKNFFES  685 (695)
Q Consensus       659 gs~Dg~IriWDl~tg~~v~~~~~h~~~  685 (695)
                      ++.+ -|+|||+.+++.+..++.....
T Consensus       176 and~-Gv~vyd~~~~~~l~~i~~p~~~  201 (846)
T KOG2066|consen  176 ANDD-GVKVYDTPTRQRLTNIPPPSQS  201 (846)
T ss_pred             ecCC-CcEEEeccccceeeccCCCCCC
Confidence            6645 5999999988887777644333

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.02  E-value=0.00058  Score=76.55  Aligned_cols=132  Identities=11%  Similarity=0.024  Sum_probs=89.2

Q ss_pred             CeEEEEEcCCCCE-EEEEeCC---CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEE-EeCC--CeEEEEECCCC
Q 005473          557 KVESCHFSPDGKL-LATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSAD--RTVRVWDTENP  629 (695)
Q Consensus       557 ~V~~v~fspdg~~-LaSgs~D---g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaT-gs~D--gtIrvWDl~t~  629 (695)
                      .+..-.|+|||+. ++..+.+   ..|+++|+.+++...... ..+.+...+|+|||+.|+. .+.+  ..|+++|+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            6789999999984 6654443   568889998887654443 4566778899999987654 4333  46888898775


Q ss_pred             CeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       630 ~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg--~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      .  .+.+..+.+......|+|||+.++++.+..+  .|+++|+.+++..+......   ....| +||
T Consensus       268 ~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~---~~~~~-SPD  329 (419)
T PRK04043        268 T--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK---NNSSV-STY  329 (419)
T ss_pred             c--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC---cCceE-CCC
Confidence            4  3444444444456789999998888876555  58888888776644332211   12367 775

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.99  E-value=0.00018  Score=78.24  Aligned_cols=111  Identities=18%  Similarity=0.237  Sum_probs=89.0

Q ss_pred             eEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCC----eEE
Q 005473          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR----TVR  622 (695)
Q Consensus       547 ~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~Dg----tIr  622 (695)
                      +++.+...-+.|.++..+++|++++.+-+...+.+.|+++++....-+...+-|+.+.|+|+++++|-+--+|    .|+
T Consensus       393 e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Ik  472 (668)
T COG4946         393 EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIK  472 (668)
T ss_pred             eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEE
Confidence            4455666777899999999999999999899999999999988766666778999999999999999886555    599


Q ss_pred             EEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEE
Q 005473          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC  659 (695)
Q Consensus       623 vWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSg  659 (695)
                      ++|+..++.  ...+...+.=.+-+|.||+++|.+.+
T Consensus       473 lydm~~~Ki--y~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         473 LYDMDGGKI--YDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             EEecCCCeE--EEecCCcccccCcccCCCCcEEEEEe
Confidence            999998663  33333445556788999998766544

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.99  E-value=2.5e-05  Score=88.10  Aligned_cols=158  Identities=11%  Similarity=0.156  Sum_probs=116.2

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      .|+++|+.||.+++.....+.......+    .....+...-.++.||++.|.-+.|+.....|.+...+|.|.||-+-.
T Consensus        27 gyIAcgG~dGlLKVlKl~t~t~d~~~~g----laa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlyk  102 (1189)
T KOG2041|consen   27 GYIACGGADGLLKVLKLGTDTTDLNKSG----LAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYK  102 (1189)
T ss_pred             CeEEeccccceeEEEEccccCCcccccc----cccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeec
Confidence            7999999999999997654432221111    112234455678899999999999999999999999999999998866


Q ss_pred             CeEEEEe--cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc
Q 005473          587 FTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (695)
Q Consensus       587 ~~~~~~l--~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~  664 (695)
                      +.-....  ...++.|.+++|..+|..+...-.||.|.|=.++..+.--+.+.+  .....+.|++|.+.++ .+-..|.
T Consensus       103 gsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~L-f~~ange  179 (1189)
T KOG2041|consen  103 GSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQAL-FKKANGE  179 (1189)
T ss_pred             ccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHHHH-hhhcCCc
Confidence            5433222  334678999999999999999999999988887754321122332  2345788999987444 6777899


Q ss_pred             EEEEECC
Q 005473          665 IRYWSIN  671 (695)
Q Consensus       665 IriWDl~  671 (695)
                      +++||..
T Consensus       180 ~hlydnq  186 (1189)
T KOG2041|consen  180 THLYDNQ  186 (1189)
T ss_pred             EEEeccc
Confidence            9999964

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=97.98  E-value=2.9e-05  Score=81.58  Aligned_cols=132  Identities=16%  Similarity=0.163  Sum_probs=94.1

Q ss_pred             cCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEE
Q 005473          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAV  580 (695)
Q Consensus       502 l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fsp-dg~~LaSgs~Dg~V~  580 (695)
                      +...++++.+|+..+.|.+++.....           ...++.   ... --|.+.|+|+..-. ++.+|.+.+.+|+|+
T Consensus       260 f~~s~nLv~~GcRngeI~~iDLR~rn-----------qG~~~~---a~r-lyh~Ssvtslq~Lq~s~q~LmaS~M~gkik  324 (425)
T KOG2695|consen  260 FAGSDNLVFNGCRNGEIFVIDLRCRN-----------QGNGWC---AQR-LYHDSSVTSLQILQFSQQKLMASDMTGKIK  324 (425)
T ss_pred             hcccCCeeEecccCCcEEEEEeeecc-----------cCCCcc---eEE-EEcCcchhhhhhhccccceEeeccCcCcee
Confidence            56667899999999999999664331           112221   111 24788899998877 778898999999999


Q ss_pred             EEECCCCeE---EEEecccCCCeE--EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecC----CCCeEEEEEe
Q 005473          581 LWCTESFTV---KSTLEEHTQWIT--DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH----STTVMSLDFH  649 (695)
Q Consensus       581 IWDl~t~~~---~~~l~~H~~~V~--~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh----~~~V~sl~fs  649 (695)
                      +||++..++   +..++||...-.  -+...+..+.+++++.|...|||.++.+.. +.++.-.    +..+.+++|.
T Consensus       325 LyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL-l~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  325 LYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL-LCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             EeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCce-eeccCCCCccccccccceehh
Confidence            999998888   888899864333  334456778899999999999999998764 4444322    2234555554

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=7.8e-06  Score=88.21  Aligned_cols=159  Identities=17%  Similarity=0.229  Sum_probs=115.1

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEE
Q 005473          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWC  583 (695)
Q Consensus       505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~-Dg~V~IWD  583 (695)
                      ..+|+.+++.|+.++.|--..                ..-...++.++.|-+.|.+++.+-++.+++|.+. |+.++++|
T Consensus        19 ka~fiiqASlDGh~KFWkKs~----------------isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfD   82 (558)
T KOG0882|consen   19 KAKFIIQASLDGHKKFWKKSR----------------ISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFD   82 (558)
T ss_pred             hhheEEeeecchhhhhcCCCC----------------ccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEE
Confidence            348999999999999992211                0122345666778888888888888888888777 88888887


Q ss_pred             CCCCeE------------------------------------------------EEEecccCCCeEEEEEcCCCCEEEEE
Q 005473          584 TESFTV------------------------------------------------KSTLEEHTQWITDVRFSPSLSRLATS  615 (695)
Q Consensus       584 l~t~~~------------------------------------------------~~~l~~H~~~V~~v~~spdg~~LaTg  615 (695)
                      +++...                                                ...-.-|..+|.++.+.+.+..+++.
T Consensus        83 vEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi  162 (558)
T KOG0882|consen   83 VENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI  162 (558)
T ss_pred             eeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeec
Confidence            743110                                                01112378899999999999999999


Q ss_pred             eCCCeEEEEECCC----CCe-e---------EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473          616 SADRTVRVWDTEN----PDY-S---------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  680 (695)
Q Consensus       616 s~DgtIrvWDl~t----~~~-~---------l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~  680 (695)
                      ...|.|..|....    ++. .         +..+..-+...+++.|+|++. .+.+-+.|..||++++++|+.+..+.
T Consensus       163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~-qistl~~DrkVR~F~~KtGklvqeiD  240 (558)
T KOG0882|consen  163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA-QISTLNPDRKVRGFVFKTGKLVQEID  240 (558)
T ss_pred             cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccC-cccccCcccEEEEEEeccchhhhhhh
Confidence            8899999999873    110 0         111222345678999999998 45566789999999999999887765

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=2.1e-05  Score=83.97  Aligned_cols=114  Identities=14%  Similarity=0.189  Sum_probs=89.8

Q ss_pred             EEEEECCCCeEEEEecccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEE
Q 005473          579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC  657 (695)
Q Consensus       579 V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~-~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~lla  657 (695)
                      |++.+..+.+....+.+|...|.+++|+|..+ ++..++.+.+|+|.|+++.. ++..+..| ..+++++|+-|..++|+
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-~vssy~a~-~~~wSC~wDlde~h~IY  252 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-VVSSYIAY-NQIWSCCWDLDERHVIY  252 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce-eeeheecc-CCceeeeeccCCcceeE
Confidence            77777777676667788999999999999655 78899999999999999854 57778877 78999999999999999


Q ss_pred             EEeCCCcEEEEECCCCeE-EEEEe--cCCCcEEEEEEeCC
Q 005473          658 SCDNNSEIRYWSINNGSC-AGVFK--NFFESFVSVRVVQP  694 (695)
Q Consensus       658 Sgs~Dg~IriWDl~tg~~-v~~~~--~h~~~VtsVaf~sP  694 (695)
                      +|...|.|.|||++..+- +..+.  ....+|..|+.+.|
T Consensus       253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~  292 (463)
T KOG1645|consen  253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQP  292 (463)
T ss_pred             EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCc
Confidence            999999999999986542 22222  23456666655333

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.91  E-value=0.00018  Score=80.79  Aligned_cols=74  Identities=20%  Similarity=0.220  Sum_probs=63.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005473          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (695)
Q Consensus       553 ~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t  628 (695)
                      .....|.||+++|+...|+.|+.||.|++||...+...  +....-.++.++|+|+|..|++|+.-|.+.+||+.-
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            45678999999999999999999999999998765433  323456788999999999999999999999999864

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.90  E-value=6.7e-05  Score=85.63  Aligned_cols=133  Identities=21%  Similarity=0.350  Sum_probs=108.3

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCC------------CEEEEEeCCCeEEEEE
Q 005473          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL------------SRLATSSADRTVRVWD  625 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg------------~~LaTgs~DgtIrvWD  625 (695)
                      -.++.|+|.| +||-|+. ..|.|-|.++.+.+..++-|...|+.|+|.|..            -+|+++...|.|.+||
T Consensus        18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d   95 (1062)
T KOG1912|consen   18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD   95 (1062)
T ss_pred             ccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence            5788999876 6777775 458888999999999999999999999998731            2467778889999999


Q ss_pred             CCCCCeeEEEEecCCCCeEEEEEec---CCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          626 TENPDYSLRTFTGHSTTVMSLDFHP---SKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       626 l~t~~~~l~~~~gh~~~V~sl~fsp---dg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      ...... +..+..|.+.|-.++|-+   +.++++++-....+|.+|+..+|+.+-.+........++.| .|
T Consensus        96 ~~~~s~-~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~-DP  165 (1062)
T KOG1912|consen   96 FVLASV-INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRV-DP  165 (1062)
T ss_pred             ehhhhh-hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeee-CC
Confidence            998654 667788889999999865   34456766666789999999999999888877677777887 76

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=97.88  E-value=2.9e-05  Score=81.01  Aligned_cols=97  Identities=20%  Similarity=0.266  Sum_probs=76.5

Q ss_pred             CCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCE-EEEEeCCCeEEEEECCCCCeeE
Q 005473          556 SKVESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSL  633 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSg-s~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~-LaTgs~DgtIrvWDl~t~~~~l  633 (695)
                      +.|.-+.|..|..+++++ ..|+.|.+|++...+-...+......+..++|+|||+. |.+...|-.|.||.+.+.+.  
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~--  126 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG--  126 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee--
Confidence            457778898888876655 45789999999988888888877889999999999965 56677899999999998553  


Q ss_pred             EEEecCCCCeEEEEEecCCCe
Q 005473          634 RTFTGHSTTVMSLDFHPSKED  654 (695)
Q Consensus       634 ~~~~gh~~~V~sl~fspdg~~  654 (695)
                      ..+...+..+..++|+|||+.
T Consensus       127 ~~~~~pK~~~kg~~f~~dg~f  147 (447)
T KOG4497|consen  127 YLLPHPKTNVKGYAFHPDGQF  147 (447)
T ss_pred             EEecccccCceeEEECCCCce
Confidence            223333445788999999983

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.87  E-value=0.00012  Score=85.03  Aligned_cols=140  Identities=20%  Similarity=0.266  Sum_probs=106.8

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeC---------CC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH---------DK  577 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~---------Dg  577 (695)
                      +++.+|...|+|.+-+.                   ..++.++++.+|++.|.++..  .|++|++||.         |.
T Consensus       188 r~lf~G~t~G~V~LrD~-------------------~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~  246 (1118)
T KOG1275|consen  188 RNLFCGDTRGTVFLRDP-------------------NSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDP  246 (1118)
T ss_pred             cEEEeecccceEEeecC-------------------CcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccc
Confidence            77888888888877633                   345778999999999887766  5889999886         45


Q ss_pred             cEEEEECCCCeEEEEecccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEC---CCCCeeEEEEecCCCCeEEEEEecCCC
Q 005473          578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVMSLDFHPSKE  653 (695)
Q Consensus       578 ~V~IWDl~t~~~~~~l~~H~~~V~~v~~spd-g~~LaTgs~DgtIrvWDl---~t~~~~l~~~~gh~~~V~sl~fspdg~  653 (695)
                      .|+|||++..+.+.-+.-|.++ .-++|+|. ...+++++..|.+.+-|.   .++...+..+..-...+.+++++++|.
T Consensus       247 FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~  325 (1118)
T KOG1275|consen  247 FVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGD  325 (1118)
T ss_pred             hhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCc
Confidence            6899999988776666555554 56788885 457778888899999994   443332344444445699999999987


Q ss_pred             eEEEEEeCCCcEEEEE
Q 005473          654 DLLCSCDNNSEIRYWS  669 (695)
Q Consensus       654 ~llaSgs~Dg~IriWD  669 (695)
                       .++.|..+|.|.+|-
T Consensus       326 -alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  326 -ALAFGDHEGHVNLWA  340 (1118)
T ss_pred             -eEEEecccCcEeeec
Confidence             788999999999997

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.85  E-value=8.1e-05  Score=84.11  Aligned_cols=117  Identities=17%  Similarity=0.284  Sum_probs=92.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---------------EEEEecccCCCeEEEEEcCCCCEEEEEeCCC
Q 005473          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---------------VKSTLEEHTQWITDVRFSPSLSRLATSSADR  619 (695)
Q Consensus       555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~---------------~~~~l~~H~~~V~~v~~spdg~~LaTgs~Dg  619 (695)
                      .....|+.|+.+..+||+|+.||.++|.-+.+..               .-.+++||.+.|.-+.|+.....|.|+..+|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            3458899999999999999999999999664321               1246789999999999999889999999999


Q ss_pred             eEEEEECCCCCeeEEEEe-cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473          620 TVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (695)
Q Consensus       620 tIrvWDl~t~~~~l~~~~-gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t  672 (695)
                      .|.||-+-.+..+..... ..++-|.+++|..||.. +|..-.||.|.|=.++.
T Consensus        94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~k-IcIvYeDGavIVGsvdG  146 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTK-ICIVYEDGAVIVGSVDG  146 (1189)
T ss_pred             eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcE-EEEEEccCCEEEEeecc
Confidence            999999987766433332 23466899999999984 55667788887766653

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.81  E-value=0.0023  Score=66.39  Aligned_cols=124  Identities=15%  Similarity=0.233  Sum_probs=86.0

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-----------------------------------EE--------E--
Q 005473          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTV-----------------------------------KS--------T--  592 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~-----------------------------------~~--------~--  592 (695)
                      -.-++||||+.+||.+...|+|+|||+....+                                   +.        .  
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~  125 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL  125 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence            56799999999999999999999999852110                                   00        0  


Q ss_pred             ----------------ec-ccCCCeEEEEEcCCCCEEEEEeC----C-------CeEEEEECCCCCe-------------
Q 005473          593 ----------------LE-EHTQWITDVRFSPSLSRLATSSA----D-------RTVRVWDTENPDY-------------  631 (695)
Q Consensus       593 ----------------l~-~H~~~V~~v~~spdg~~LaTgs~----D-------gtIrvWDl~t~~~-------------  631 (695)
                                      +. .+...|.++.|+|..++|+.|+.    |       .-+..|.+-++..             
T Consensus       126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~  205 (282)
T PF15492_consen  126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDIT  205 (282)
T ss_pred             EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccc
Confidence                            00 12457899999999888877753    1       1366676532210             


Q ss_pred             ------e------EEEEe---cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecC
Q 005473          632 ------S------LRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF  682 (695)
Q Consensus       632 ------~------l~~~~---gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h  682 (695)
                            .      ++.+.   .....|..|.++|||. +||+...+|.|.+|++.+-++.+.++-+
T Consensus       206 ~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  206 ASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             ccccccceeeccceeeeeccccCCCceEEEEECCCCC-EEEEEEcCCeEEEEecCcchhhcccchh
Confidence                  0      01111   1346799999999998 7778899999999999987777776643

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.78  E-value=0.002  Score=66.55  Aligned_cols=133  Identities=14%  Similarity=0.122  Sum_probs=93.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEE-EEeCCCeEEEEE
Q 005473          555 TSKVESCHFSPDGKLLATGGHD--------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWD  625 (695)
Q Consensus       555 ~~~V~~v~fspdg~~LaSgs~D--------g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~La-Tgs~DgtIrvWD  625 (695)
                      ....+.+++.++|++.++....        |.|..++.. ++...... .-.....|+|+|+++.|+ +-+..+.|..||
T Consensus        85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~  162 (246)
T PF08450_consen   85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFD  162 (246)
T ss_dssp             TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEE
T ss_pred             cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEe
Confidence            3457899999999977776654        456777766 55444433 356678999999998765 556788899999


Q ss_pred             CCCCCee---EEEE---ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473          626 TENPDYS---LRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       626 l~t~~~~---l~~~---~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf  691 (695)
                      +......   ...+   ....+..-.+++..+|. |+++....+.|.++|.+ |+.+..+......+++++|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f  232 (246)
T PF08450_consen  163 LDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF  232 (246)
T ss_dssp             EETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred             ccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence            9643321   1222   22223477899999987 66677778999999987 9999988877668899998

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.77  E-value=0.0032  Score=78.29  Aligned_cols=119  Identities=13%  Similarity=0.158  Sum_probs=81.8

Q ss_pred             eEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEeccc---------------CCCeEEEEEcCCCCEE-EEEeCCCe
Q 005473          558 VESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEH---------------TQWITDVRFSPSLSRL-ATSSADRT  620 (695)
Q Consensus       558 V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H---------------~~~V~~v~~spdg~~L-aTgs~Dgt  620 (695)
                      -.+|+|++ ++.++++...++.|++||..++... .+.+.               -.....|+|+|++..| ++-+.++.
T Consensus       685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~  763 (1057)
T PLN02919        685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS  763 (1057)
T ss_pred             CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence            35899999 5566667677899999999876543 22111               1234579999998855 55566789


Q ss_pred             EEEEECCCCCeeEEE------------EecC--------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEE
Q 005473          621 VRVWDTENPDYSLRT------------FTGH--------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV  678 (695)
Q Consensus       621 IrvWDl~t~~~~l~~------------~~gh--------~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~  678 (695)
                      |++||++++...+..            +..+        -.....++|+++|. ++++...++.|++||..++.+...
T Consensus       764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~ti  840 (1057)
T PLN02919        764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTL  840 (1057)
T ss_pred             EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEE
Confidence            999999876532111            0000        11246889999987 777888899999999988766543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=97.75  E-value=0.0028  Score=67.49  Aligned_cols=141  Identities=12%  Similarity=0.070  Sum_probs=97.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCC--CeEEE--EecccCCCeEEEEEcCCCCEEEEEeC-CCeEEEE
Q 005473          553 ASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTES--FTVKS--TLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVW  624 (695)
Q Consensus       553 ~H~~~V~~v~fspdg~~LaSgs~D---g~V~IWDl~t--~~~~~--~l~~H~~~V~~v~~spdg~~LaTgs~-DgtIrvW  624 (695)
                      .+.+.++-++|+++.++|+++..+   |.|..|.++.  |+...  .......+-+.|++++++++|+++.. .|.|.++
T Consensus        37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~  116 (346)
T COG2706          37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY  116 (346)
T ss_pred             cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence            345567889999999999888654   7788877764  44322  22222334488999999999999875 5789999


Q ss_pred             ECCCCCee--EEEEecCCCC----------eEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEE----EEecCCCcEEE
Q 005473          625 DTENPDYS--LRTFTGHSTT----------VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG----VFKNFFESFVS  688 (695)
Q Consensus       625 Dl~t~~~~--l~~~~gh~~~----------V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~----~~~~h~~~Vts  688 (695)
                      -+++....  +.....|.+.          +-+..|.|++++++++.-.--.|.+|++..|....    .++...++ ..
T Consensus       117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GP-RH  195 (346)
T COG2706         117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGP-RH  195 (346)
T ss_pred             EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCc-ce
Confidence            99764321  1223335544          88899999999666555455579999999876432    23344444 88


Q ss_pred             EEEeCCC
Q 005473          689 VRVVQPR  695 (695)
Q Consensus       689 Vaf~sPd  695 (695)
                      |+| ||+
T Consensus       196 i~F-Hpn  201 (346)
T COG2706         196 IVF-HPN  201 (346)
T ss_pred             EEE-cCC
Confidence            999 996

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.70  E-value=8e-05  Score=79.73  Aligned_cols=120  Identities=19%  Similarity=0.212  Sum_probs=88.1

Q ss_pred             EEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEE
Q 005473          548 FQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWD  625 (695)
Q Consensus       548 v~~l~~H~~~V~~v~fspdg~-~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~-~LaTgs~DgtIrvWD  625 (695)
                      ...+.+|...|..++|+|..+ ++..++.+.+|+|.|+++..++..+..| ..+++++|.-+.. +|..|...|.|.|||
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD  264 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYD  264 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEE
Confidence            446778888999999999888 8999999999999999999999888887 7899999988654 567777799999999


Q ss_pred             CCCCCeeEEEEecC--CCCeEEEE------EecCCCeEEEEEeCCCcEEEEECC
Q 005473          626 TENPDYSLRTFTGH--STTVMSLD------FHPSKEDLLCSCDNNSEIRYWSIN  671 (695)
Q Consensus       626 l~t~~~~l~~~~gh--~~~V~sl~------fspdg~~llaSgs~Dg~IriWDl~  671 (695)
                      ++..+.++..+.+.  ..+|..++      ..+.|. +++....  ...+|++.
T Consensus       265 ~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt--~l~f~ei~  315 (463)
T KOG1645|consen  265 MRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALT--VLQFYEIV  315 (463)
T ss_pred             ccCCCchHhhhhhhhccCcceeecccCccccccccc-eEEeeeh--hhhhhhhh
Confidence            99876544444431  12333332      223344 4434433  35677764

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.68  E-value=2.3e-05  Score=90.16  Aligned_cols=130  Identities=18%  Similarity=0.202  Sum_probs=102.9

Q ss_pred             eeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCC--eE
Q 005473          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TV  621 (695)
Q Consensus       544 ~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~Dg--tI  621 (695)
                      .++..++++.|+...+||+|+-+.+.|+.|+..|.|++|++.+|........|.++|+.|.-+-+|..+++.+.-.  -.
T Consensus      1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence            4566778889999999999999999999999999999999999999999999999999999888988877765432  47


Q ss_pred             EEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEE
Q 005473          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV  678 (695)
Q Consensus       622 rvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~  678 (695)
                      -+|++....-...+|.    ...++.|+..-. .-+.|.....+.+||+.++.++.+
T Consensus      1170 aLW~~~s~~~~~Hsf~----ed~~vkFsn~~q-~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD----EDKAVKFSNSLQ-FRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred             HHhccccccCcccccc----ccceeehhhhHH-HHHhcccccceEEEecccCcHHHH
Confidence            8999986444455554    356788876533 223344445789999998876655

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=97.68  E-value=0.0091  Score=63.70  Aligned_cols=114  Identities=12%  Similarity=0.171  Sum_probs=86.7

Q ss_pred             EEEEEcCCCCEEEEEeC-CCcEEEEECCC-CeEE--EEecccCCC----------eEEEEEcCCCCEEEEEeC-CCeEEE
Q 005473          559 ESCHFSPDGKLLATGGH-DKKAVLWCTES-FTVK--STLEEHTQW----------ITDVRFSPSLSRLATSSA-DRTVRV  623 (695)
Q Consensus       559 ~~v~fspdg~~LaSgs~-Dg~V~IWDl~t-~~~~--~~l~~H~~~----------V~~v~~spdg~~LaTgs~-DgtIrv  623 (695)
                      +-++++++|++|+++.. -|.|.++-+.+ |.+.  ..+..|.+.          +.+..+.|++++|++.+- --.|.+
T Consensus        92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~  171 (346)
T COG2706          92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFL  171 (346)
T ss_pred             eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEE
Confidence            77999999999999986 58899998865 3322  223346555          889999999999988753 236999


Q ss_pred             EECCCCCeeEE--EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473          624 WDTENPDYSLR--TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (695)
Q Consensus       624 WDl~t~~~~l~--~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t  672 (695)
                      |++..++....  ........-+.|.|||+++...+.+--+++|.+|.+..
T Consensus       172 y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~  222 (346)
T COG2706         172 YDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP  222 (346)
T ss_pred             EEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence            99997664221  11133456789999999998888888999999999987

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.66  E-value=0.0027  Score=77.71  Aligned_cols=137  Identities=17%  Similarity=0.174  Sum_probs=92.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeC---C---CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC---CCeEEEE
Q 005473          554 STSKVESCHFSPDGKLLATGGH---D---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVW  624 (695)
Q Consensus       554 H~~~V~~v~fspdg~~LaSgs~---D---g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~---DgtIrvW  624 (695)
                      +.+.-..|+|-.||.|+|+.+.   +   ..+|||+-+ |....+.+.-.+--.+++|.|.|.+||+...   ...|.+|
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf  286 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF  286 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence            4556678999999999998875   2   579999965 6665555544555668999999999999864   3446666


Q ss_pred             ECCCCCeeEEEEe--cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe---cCCCcEEEEEEeCC
Q 005473          625 DTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---NFFESFVSVRVVQP  694 (695)
Q Consensus       625 Dl~t~~~~l~~~~--gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~---~h~~~VtsVaf~sP  694 (695)
                      .-..-+.-...+.  .....|..+.|++|+. +||..-.|. |.+|-+.+.....+..   .....+..+.| ||
T Consensus       287 ErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~W-dp  358 (928)
T PF04762_consen  287 ERNGLRHGEFTLRFDPEEEKVIELAWNSDSE-ILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKW-DP  358 (928)
T ss_pred             ecCCcEeeeEecCCCCCCceeeEEEECCCCC-EEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEE-CC
Confidence            6543221112222  3456799999999988 565555454 9999998765432222   22334455889 87

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.59  E-value=0.00044  Score=71.95  Aligned_cols=163  Identities=16%  Similarity=0.254  Sum_probs=100.6

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEEC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK--LLATGGHDKKAVLWCT  584 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~--~LaSgs~Dg~V~IWDl  584 (695)
                      .++++|...|.|.+|.-.....-..++...... ....+..++.+. -..+|..+.|..++.  .++..+.|++|++|-+
T Consensus        39 ~YlatGDkgGRVvlfer~~s~~ceykf~teFQs-he~EFDYLkSle-ieEKin~I~w~~~t~r~hFLlstNdktiKlWKi  116 (460)
T COG5170          39 LYLATGDKGGRVVLFEREKSYGCEYKFFTEFQS-HELEFDYLKSLE-IEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKI  116 (460)
T ss_pred             ceEeecCCCceEEEeecccccccchhhhhhhcc-cccchhhhhhcc-HHHHhhheeeecCCCcceEEEecCCceeeeeee
Confidence            789999888999988322111000000000000 001111111111 123588899976543  4666678999999976


Q ss_pred             CCCe------------------------------------------EEEEe-cccCCCeEEEEEcCCCCEEEEEeCCCeE
Q 005473          585 ESFT------------------------------------------VKSTL-EEHTQWITDVRFSPSLSRLATSSADRTV  621 (695)
Q Consensus       585 ~t~~------------------------------------------~~~~l-~~H~~~V~~v~~spdg~~LaTgs~DgtI  621 (695)
                      ....                                          +.+.. ..|.--|.++.|..|...++++ +|=.|
T Consensus       117 yeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrI  195 (460)
T COG5170         117 YEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSA-DDLRI  195 (460)
T ss_pred             ecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeec-cceee
Confidence            4210                                          01111 3567778899998887777776 57889


Q ss_pred             EEEECCCCCee--EEEEecCC-----CCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473          622 RVWDTENPDYS--LRTFTGHS-----TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (695)
Q Consensus       622 rvWDl~t~~~~--l~~~~gh~-----~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t  672 (695)
                      .+|++.-...+  +..+..|.     .-|++..|||....++...+..|.|++-|+|.
T Consensus       196 NLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq  253 (460)
T COG5170         196 NLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQ  253 (460)
T ss_pred             eeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhh
Confidence            99998755433  23333332     34789999999888888888899999999983

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.58  E-value=0.0078  Score=65.71  Aligned_cols=121  Identities=14%  Similarity=0.109  Sum_probs=86.3

Q ss_pred             EEcC-CCCEEEEEeCCCcEEEEECCC-----CeEEEEecc-------cCCCeEEEEEcCCCCEEEEEe----------CC
Q 005473          562 HFSP-DGKLLATGGHDKKAVLWCTES-----FTVKSTLEE-------HTQWITDVRFSPSLSRLATSS----------AD  618 (695)
Q Consensus       562 ~fsp-dg~~LaSgs~Dg~V~IWDl~t-----~~~~~~l~~-------H~~~V~~v~~spdg~~LaTgs----------~D  618 (695)
                      .|.+ +|++++...+ |+|.+-|+..     .+.+..+..       ..+.+.-+++++++++++...          ..
T Consensus       200 ~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~  278 (352)
T TIGR02658       200 AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTAS  278 (352)
T ss_pred             ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCC
Confidence            3455 8888888776 9999999543     233332211       223344599999999887742          12


Q ss_pred             CeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCC-eEEEEEeCCCcEEEEECCCCeEEEEE-ecCCCc
Q 005473          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVF-KNFFES  685 (695)
Q Consensus       619 gtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~-~llaSgs~Dg~IriWDl~tg~~v~~~-~~h~~~  685 (695)
                      +.|.++|+.+.+. +..+.. ...+..++|+||++ .++++...++.|.++|+.+++.++.+ .....+
T Consensus       279 ~~V~ViD~~t~kv-i~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~vg~~P  345 (352)
T TIGR02658       279 RFLFVVDAKTGKR-LRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQLGRGP  345 (352)
T ss_pred             CEEEEEECCCCeE-EEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeeccCCCCC
Confidence            5799999998775 554442 34789999999999 77767767899999999999999998 444333

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.49  E-value=0.0026  Score=67.51  Aligned_cols=120  Identities=15%  Similarity=0.213  Sum_probs=87.5

Q ss_pred             EEEcCCCCEEEEEeCC-----CcEEEEECC-CCeEEEEecccCCCeEEEEEcCCCCEEEEEeC-------CC--------
Q 005473          561 CHFSPDGKLLATGGHD-----KKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-------DR--------  619 (695)
Q Consensus       561 v~fspdg~~LaSgs~D-----g~V~IWDl~-t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~-------Dg--------  619 (695)
                      -+|++||++|++.-.|     |.|-|||+. +...+..+..|.-.-..+.+.||+..|+++..       .|        
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t  135 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT  135 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence            5799999999997654     889999998 77788888888777788899999977776631       12        


Q ss_pred             ---eEEEEECCCCCee-------------EE----------------------------EE----------------ecC
Q 005473          620 ---TVRVWDTENPDYS-------------LR----------------------------TF----------------TGH  639 (695)
Q Consensus       620 ---tIrvWDl~t~~~~-------------l~----------------------------~~----------------~gh  639 (695)
                         .+-+.|..++...             ++                            .+                ...
T Consensus       136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l  215 (305)
T PF07433_consen  136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRL  215 (305)
T ss_pred             cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhh
Confidence               2333343333210             00                            00                012


Q ss_pred             CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473          640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  680 (695)
Q Consensus       640 ~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~  680 (695)
                      ...|-+|+++.++..+++|+-..+.+.+||..+++++....
T Consensus       216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~  256 (305)
T PF07433_consen  216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP  256 (305)
T ss_pred             CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc
Confidence            35688999999999888899999999999999998887665

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.43  E-value=0.003  Score=69.73  Aligned_cols=115  Identities=13%  Similarity=0.176  Sum_probs=86.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECC
Q 005473          553 ASTSKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTE  627 (695)
Q Consensus       553 ~H~~~V~~v~fspdg~~LaSgs--~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~D---gtIrvWDl~  627 (695)
                      +-.++|..++|.|.++.+++.+  .+-++.++|+++. .+..+  ....=..+.|+|.++++++++.|   |.|-+||..
T Consensus       272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~  348 (561)
T COG5354         272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPA  348 (561)
T ss_pred             cccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecCCccccceEEeccC
Confidence            4578899999999988766554  6888999999865 44333  33445678899999999998876   469999999


Q ss_pred             CCCeeEEEEecCCCCeEEEEEecCCCeEEEEEe-----CCCcEEEEECCC
Q 005473          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-----NNSEIRYWSINN  672 (695)
Q Consensus       628 t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs-----~Dg~IriWDl~t  672 (695)
                      ....++..+.+.  ...-++|+||+..+...-.     .|..|.|||+..
T Consensus       349 ~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g  396 (561)
T COG5354         349 GRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG  396 (561)
T ss_pred             CceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence            766666567654  3456789999986654332     478899999863

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.41  E-value=0.00059  Score=76.92  Aligned_cols=94  Identities=16%  Similarity=0.168  Sum_probs=78.2

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeE-EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 005473          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~-~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~  634 (695)
                      -.|.-+.|+|.-.+||.+..+|.|.++.+. ...+.++..|...|+ +++|.|||+.||.|-.||+|++-|+.++.....
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            347889999999999999999999999998 888889987777777 999999999999999999999999998775333


Q ss_pred             EEecCCCCeEEEEEec
Q 005473          635 TFTGHSTTVMSLDFHP  650 (695)
Q Consensus       635 ~~~gh~~~V~sl~fsp  650 (695)
                      ....-...|.++.|.+
T Consensus       100 ~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen  100 FLFSVETDISKGIWDR  115 (665)
T ss_pred             cccccccchheeeccc
Confidence            2223345677777753

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.41  E-value=0.0019  Score=75.48  Aligned_cols=107  Identities=21%  Similarity=0.247  Sum_probs=81.7

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC---------CCeEEEEECC
Q 005473          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---------DRTVRVWDTE  627 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~---------DgtIrvWDl~  627 (695)
                      .|+-++.  +++++++|...|+|.+-|.++.+.++++..|.+.|.++...  |++|+|+|.         |..|+|||+|
T Consensus       179 ~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLR  254 (1118)
T KOG1275|consen  179 GVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLR  254 (1118)
T ss_pred             ceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeecc--CCeEEEeecccccccccccchhhhhhhh
Confidence            3444444  68899999999999999999999999999999999888775  788988874         7779999999


Q ss_pred             CCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEE
Q 005473          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS  669 (695)
Q Consensus       628 t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWD  669 (695)
                      ..+. +.-+.-+.+. .-+.|+|.-...+|.++..|.+.+-|
T Consensus       255 mmra-l~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd  294 (1118)
T KOG1275|consen  255 MMRA-LSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVD  294 (1118)
T ss_pred             hhhc-cCCcccccCc-hhhhhcccccceEEEEecccceeecc
Confidence            7553 3333323332 44667777666667777778888777

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.39  E-value=0.0034  Score=72.23  Aligned_cols=124  Identities=15%  Similarity=0.196  Sum_probs=94.1

Q ss_pred             eeEEEecCCCCCeEEEEEcCC------C------CEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcC---CC-
Q 005473          546 TEFQLIPASTSKVESCHFSPD------G------KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP---SL-  609 (695)
Q Consensus       546 ~~v~~l~~H~~~V~~v~fspd------g------~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~sp---dg-  609 (695)
                      ..+..+..|...|+.|.|.|.      +      -+||++...|.|.|||...+..+..+..|.++|.+++|-+   +. 
T Consensus        46 q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Sr  125 (1062)
T KOG1912|consen   46 QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSR  125 (1062)
T ss_pred             hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcch
Confidence            456677889999999999882      1      2578888889999999999888888999999999999976   33 


Q ss_pred             CEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 005473          610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI  670 (695)
Q Consensus       610 ~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl  670 (695)
                      .+|+.-....+|.+|+..+|.. +..+........|+.+.|-...-++.-+..|.|-+-+.
T Consensus       126 d~LlaIh~ss~lvLwntdtG~k-~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~  185 (1062)
T KOG1912|consen  126 DVLLAIHGSSTLVLWNTDTGEK-FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKD  185 (1062)
T ss_pred             heeEEecCCcEEEEEEccCCce-eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence            3555556678999999999875 55554444556778888855444545555777777765

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.38  E-value=0.078  Score=54.59  Aligned_cols=110  Identities=16%  Similarity=0.184  Sum_probs=75.8

Q ss_pred             eEEEEEc-CCCCEEEEEeCCCcEEEEECCCCeEEEEecc-----cCCCeEEEEEcCCCCEEEEEeCC--------CeEEE
Q 005473          558 VESCHFS-PDGKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPSLSRLATSSAD--------RTVRV  623 (695)
Q Consensus       558 V~~v~fs-pdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~-----H~~~V~~v~~spdg~~LaTgs~D--------gtIrv  623 (695)
                      ...+++. ++++ |+.+..++ +.++|..+++....+..     .....+++++.|+|++.++....        |.|..
T Consensus        42 ~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~  119 (246)
T PF08450_consen   42 PNGMAFDRPDGR-LYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR  119 (246)
T ss_dssp             EEEEEEECTTSE-EEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred             CceEEEEccCCE-EEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence            6677777 5655 45555544 56669988866544432     34668899999999988877643        55777


Q ss_pred             EECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (695)
Q Consensus       624 WDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t  672 (695)
                      ++.. ++  +..+...-.....|+|+|+++.|+++-+..+.|..||+..
T Consensus       120 ~~~~-~~--~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~  165 (246)
T PF08450_consen  120 IDPD-GK--VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDA  165 (246)
T ss_dssp             EETT-SE--EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEET
T ss_pred             ECCC-Ce--EEEEecCcccccceEECCcchheeecccccceeEEEeccc
Confidence            7777 33  2323323456789999999998888888899999999963

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.35  E-value=0.007  Score=70.13  Aligned_cols=141  Identities=21%  Similarity=0.168  Sum_probs=93.5

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC-----CCEEEEEeCCCcE
Q 005473          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-----GKLLATGGHDKKA  579 (695)
Q Consensus       505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspd-----g~~LaSgs~Dg~V  579 (695)
                      .+.++++||.||+|.+....++.                   .... ..-..++.+|+++|+     .+.+++||.-| +
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~-------------------~~~~-~df~rpiksial~Pd~~~~~sk~fv~GG~ag-l  140 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDD-------------------EITQ-YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-L  140 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCc-------------------ccee-EecCCcceeEEeccchhhhhhhheeecCcce-E
Confidence            46899999999999988443221                   1111 122456899999997     56789999888 7


Q ss_pred             EEEECCC--CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCC------CeEEEEEecC
Q 005473          580 VLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST------TVMSLDFHPS  651 (695)
Q Consensus       580 ~IWDl~t--~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~------~V~sl~fspd  651 (695)
                      .++.-+=  .+.-..+....++|.+|.|.  |.++|-++.+| |+|||+.+... +..+.-...      .-..+.|.++
T Consensus       141 vL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~-l~~i~~p~~~~R~e~fpphl~W~~~  216 (846)
T KOG2066|consen  141 VLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQR-LTNIPPPSQSVRPELFPPHLHWQDE  216 (846)
T ss_pred             EEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccce-eeccCCCCCCCCcccCCCceEecCC
Confidence            7764221  11112455568999999997  67999998776 89999988654 333332222      2356888877


Q ss_pred             CCeEEEEEeCCCcEEEEECCCC
Q 005473          652 KEDLLCSCDNNSEIRYWSINNG  673 (695)
Q Consensus       652 g~~llaSgs~Dg~IriWDl~tg  673 (695)
                      ..  ++-|- ..+|+|..++.+
T Consensus       217 ~~--LVIGW-~d~v~i~~I~~~  235 (846)
T KOG2066|consen  217 DR--LVIGW-GDSVKICSIKKR  235 (846)
T ss_pred             Ce--EEEec-CCeEEEEEEecc
Confidence            54  33444 457999998843

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.29  E-value=0.014  Score=71.56  Aligned_cols=136  Identities=19%  Similarity=0.246  Sum_probs=89.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECC---------------C--------CeEEEEecc----------------
Q 005473          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE---------------S--------FTVKSTLEE----------------  595 (695)
Q Consensus       555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~---------------t--------~~~~~~l~~----------------  595 (695)
                      ...|.|++||||+.+|+.++.+++|.+.+..               .        |+....|.|                
T Consensus       120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~  199 (928)
T PF04762_consen  120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP  199 (928)
T ss_pred             cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence            4469999999999999999999988887431               0        000001100                


Q ss_pred             --------cCCCeEEEEEcCCCCEEEEEeC---C---CeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeC
Q 005473          596 --------HTQWITDVRFSPSLSRLATSSA---D---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (695)
Q Consensus       596 --------H~~~V~~v~~spdg~~LaTgs~---D---gtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~  661 (695)
                              +.+.-..|+|..||.++|+.+.   +   +.||||+-. +. ...+...-.+--.+++|.|.|. +||+.-.
T Consensus       200 ~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~-L~stSE~v~gLe~~l~WrPsG~-lIA~~q~  276 (928)
T PF04762_consen  200 KVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GE-LQSTSEPVDGLEGALSWRPSGN-LIASSQR  276 (928)
T ss_pred             ccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ce-EEeccccCCCccCCccCCCCCC-EEEEEEE
Confidence                    2234567899999999998864   2   579999977 33 2333332333346789999998 6655543


Q ss_pred             ---CCcEEEEECCCCeEEEEEe----cCCCcEEEEEEeCCC
Q 005473          662 ---NSEIRYWSINNGSCAGVFK----NFFESFVSVRVVQPR  695 (695)
Q Consensus       662 ---Dg~IriWDl~tg~~v~~~~----~h~~~VtsVaf~sPd  695 (695)
                         ...|.+|. ++|-....|.    .....|..|+| ++|
T Consensus       277 ~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~W-n~d  315 (928)
T PF04762_consen  277 LPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAW-NSD  315 (928)
T ss_pred             cCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEE-CCC
Confidence               45677777 5565555554    34578899999 875

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.29  E-value=0.0019  Score=74.69  Aligned_cols=70  Identities=20%  Similarity=0.239  Sum_probs=63.9

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 005473          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~  627 (695)
                      +++++|+|..-+|++|=.-|.+.+|...+.+.-.....|..+|.-+.|+++|..++|+..-|.|.+|.++
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            5679999999899999889999999998877777778899999999999999999999999999999876

>smart00320 WD40 WD40 repeats

Probab=97.29  E-value=0.00077  Score=45.80  Aligned_cols=39  Identities=41%  Similarity=0.578  Sum_probs=34.7

Q ss_pred             CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 005473          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (695)
Q Consensus       587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWD  625 (695)
                      ++++..+..|...|.+++|.+.+.++++++.|+.|++||
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            356667778999999999999989999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.23  E-value=0.0018  Score=71.99  Aligned_cols=129  Identities=18%  Similarity=0.209  Sum_probs=86.5

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC-----------CCeEEEEECC
Q 005473          559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-----------DRTVRVWDTE  627 (695)
Q Consensus       559 ~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~-----------DgtIrvWDl~  627 (695)
                      +-+.|||-|.||+|-..-| |.+|--.....+..+. |. .|.-+.|||+.++|+|=+.           ...++|||++
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~  290 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA  290 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence            5689999999999988666 8899766655555554 54 4788999999999998653           2469999999


Q ss_pred             CCCeeEEEEecCC--CCeE-EEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          628 NPDYSLRTFTGHS--TTVM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       628 t~~~~l~~~~gh~--~~V~-sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      +|.. .+.|....  ..++ -+.|+.|+++ +|.-. ...|.||+..+-.++..-.---..|....| +|
T Consensus       291 tG~l-krsF~~~~~~~~~WP~frWS~DdKy-~Arm~-~~sisIyEtpsf~lld~Kslki~gIr~Fsw-sP  356 (698)
T KOG2314|consen  291 TGLL-KRSFPVIKSPYLKWPIFRWSHDDKY-FARMT-GNSISIYETPSFMLLDKKSLKISGIRDFSW-SP  356 (698)
T ss_pred             ccch-hcceeccCCCccccceEEeccCCce-eEEec-cceEEEEecCceeeecccccCCccccCccc-CC
Confidence            9875 55555422  2233 3579999884 43333 357999998764433222222234444555 54

>smart00320 WD40 WD40 repeats

Probab=97.22  E-value=0.00083  Score=45.62  Aligned_cols=38  Identities=37%  Similarity=0.575  Sum_probs=33.7

Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005473          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (695)
Q Consensus       546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWD  583 (695)
                      .++..+..|...|.++.|++++.++++++.|+.|++||
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34566678899999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.20  E-value=0.0099  Score=64.90  Aligned_cols=102  Identities=13%  Similarity=-0.000  Sum_probs=77.9

Q ss_pred             CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCCeeEEEEecCC------
Q 005473          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFTGHS------  640 (695)
Q Consensus       577 g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~----------DgtIrvWDl~t~~~~l~~~~gh~------  640 (695)
                      ++|.|.|..+.+.+.++..-..+- .+ ++||++.|++++.          +..|.+||+.+.+. +..+.-..      
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~-~~~i~~p~~p~~~~  103 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP-IADIELPEGPRFLV  103 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE-EeEEccCCCchhhc
Confidence            889999999999988886433333 24 9999998877654          78999999999775 55554211      


Q ss_pred             -CCeEEEEEecCCCeEEEEEeC-CCcEEEEECCCCeEEEEEec
Q 005473          641 -TTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKN  681 (695)
Q Consensus       641 -~~V~sl~fspdg~~llaSgs~-Dg~IriWDl~tg~~v~~~~~  681 (695)
                       .....++++|||++++++--. +..|.+.|+.+++.+..+..
T Consensus       104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v  146 (352)
T TIGR02658       104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV  146 (352)
T ss_pred             cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence             223478899999987766634 89999999999998888774

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.16  E-value=0.016  Score=58.77  Aligned_cols=114  Identities=11%  Similarity=0.008  Sum_probs=76.5

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE-EecCC---C
Q 005473          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT-FTGHS---T  641 (695)
Q Consensus       566 dg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~-~~gh~---~  641 (695)
                      ++..+++++.++.|..||..+++.+..+.. .+.+...- ...+..++.++.|+.|+.+|+.+++. +.. .....   .
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~-~W~~~~~~~~~~~  111 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKV-LWSIYLTSSPPAG  111 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCE-EEEEEE-SSCTCS
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcce-eeeeccccccccc
Confidence            566788888999999999999999887764 22222111 12356777777888999999999886 444 23221   1


Q ss_pred             CeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCC
Q 005473          642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFF  683 (695)
Q Consensus       642 ~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~  683 (695)
                      .........++. .++.+..++.|+.+|+++|+.+..+..+.
T Consensus       112 ~~~~~~~~~~~~-~~~~~~~~g~l~~~d~~tG~~~w~~~~~~  152 (238)
T PF13360_consen  112 VRSSSSPAVDGD-RLYVGTSSGKLVALDPKTGKLLWKYPVGE  152 (238)
T ss_dssp             TB--SEEEEETT-EEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred             cccccCceEecC-EEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence            112222332355 44466669999999999999988887644

...

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.16  E-value=0.00016  Score=83.49  Aligned_cols=152  Identities=18%  Similarity=0.218  Sum_probs=105.4

Q ss_pred             cCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeC-CC-cE
Q 005473          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DK-KA  579 (695)
Q Consensus       502 l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~-Dg-~V  579 (695)
                      |...+++++.|+..|.|++|.+..+.                   ......+|..+|+-|.-+.||..+++.+. .. ..
T Consensus      1109 fs~~~~hL~vG~~~Geik~~nv~sG~-------------------~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1109 FSGGTNHLAVGSHAGEIKIFNVSSGS-------------------MEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             eecCCceEEeeeccceEEEEEccCcc-------------------ccccccccccccccccccCCcceeeeeccccCchH
Confidence            34445899999999999999775552                   22345689999999999999997665543 32 57


Q ss_pred             EEEECCC-CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC---CCeEEEEEecCCCeE
Q 005473          580 VLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS---TTVMSLDFHPSKEDL  655 (695)
Q Consensus       580 ~IWDl~t-~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~---~~V~sl~fspdg~~l  655 (695)
                      -+|++.. +..++++.+    -.++.|+.....-+.|+....+.|||+.+...+...+.+..   -.-.++.|+|+...+
T Consensus      1170 aLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred             HHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence            7999853 455556654    45888887644445666667799999999876444344321   223678899998744


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEEecC
Q 005473          656 LCSCDNNSEIRYWSINNGSCAGVFKNF  682 (695)
Q Consensus       656 laSgs~Dg~IriWDl~tg~~v~~~~~h  682 (695)
                      |    .||  .+||++..+.|+.|...
T Consensus      1246 l----ndG--vLWDvR~~~aIh~FD~f 1266 (1516)
T KOG1832|consen 1246 L----NDG--VLWDVRIPEAIHRFDQF 1266 (1516)
T ss_pred             e----eCc--eeeeeccHHHHhhhhhh
Confidence            4    366  56999988777766543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.09  E-value=0.017  Score=67.50  Aligned_cols=166  Identities=13%  Similarity=0.112  Sum_probs=108.7

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCC-eEEEEEcCCCCEEEEEeCCC-----cEE
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK-VESCHFSPDGKLLATGGHDK-----KAV  580 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~-V~~v~fspdg~~LaSgs~Dg-----~V~  580 (695)
                      ..++.|+.||.|...+.                    .+..+..+.++... |..+....+..+|++-+.|+     .|+
T Consensus        36 ~~vvigt~~G~V~~Ln~--------------------s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llk   95 (933)
T KOG2114|consen   36 GSVVIGTADGRVVILNS--------------------SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLK   95 (933)
T ss_pred             ceEEEeeccccEEEecc--------------------cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEE
Confidence            56788888888877732                    22333455566655 44444444446888877765     489


Q ss_pred             EEECCCC------eEE--EEecc-----cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC---CCCCeeEEEEecCCCCeE
Q 005473          581 LWCTESF------TVK--STLEE-----HTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVM  644 (695)
Q Consensus       581 IWDl~t~------~~~--~~l~~-----H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl---~t~~~~l~~~~gh~~~V~  644 (695)
                      |||++..      .++  ..+.+     ...++.+++.+.+-..+|+|-.||.|.++.=   |.............++|+
T Consensus        96 iw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pIT  175 (933)
T KOG2114|consen   96 IWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPIT  175 (933)
T ss_pred             EecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCce
Confidence            9998643      233  12222     2467889999999889999999999999843   221111223333457899


Q ss_pred             EEEEecCCCeEEEEEeCCCcEEEEECCCCeE-EEEEecCCCcEEEEEEeCC
Q 005473          645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       645 sl~fspdg~~llaSgs~Dg~IriWDl~tg~~-v~~~~~h~~~VtsVaf~sP  694 (695)
                      .+.|..++..+++.+. -..|.+|.+....+ +.++..|..++.|..| ++
T Consensus       176 gL~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~-~~  224 (933)
T KOG2114|consen  176 GLALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSF-SD  224 (933)
T ss_pred             eeEEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeec-CC
Confidence            9999999887443443 45799999884332 4557788888888877 54

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.09  E-value=0.00011  Score=82.47  Aligned_cols=168  Identities=15%  Similarity=0.223  Sum_probs=108.3

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEe----CCCcEEE
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGG----HDKKAVL  581 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fsp-dg~~LaSgs----~Dg~V~I  581 (695)
                      .+++.|..+|.|.+.......+.                 -.....+|...++|++|++ |.+.||.|-    .|..+.|
T Consensus        71 cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I  133 (783)
T KOG1008|consen   71 CILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI  133 (783)
T ss_pred             hhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHHHHhhhhhhcccCCccc
Confidence            57788999999988865443221                 1123457788899999988 455666653    2567999


Q ss_pred             EECCCC--eEEE--Eec-ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEE
Q 005473          582 WCTESF--TVKS--TLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL  656 (695)
Q Consensus       582 WDl~t~--~~~~--~l~-~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~ll  656 (695)
                      ||+.++  .+..  .+. +.......++|-.+.++|.+|...+.|+++|++...  .....--+..|..+...|-...++
T Consensus       134 wdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~--~~~~svnTk~vqG~tVdp~~~nY~  211 (783)
T KOG1008|consen  134 WDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL--DSVSSVNTKYVQGITVDPFSPNYF  211 (783)
T ss_pred             eecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh--hhhhhhhhhhcccceecCCCCCce
Confidence            999876  2221  122 234556688998888899999999999999998422  222221233566677777334467


Q ss_pred             EEEeCCCcEEEEE-CCCCe-EEEEEecCCC----cEEEEEEeCCC
Q 005473          657 CSCDNNSEIRYWS-INNGS-CAGVFKNFFE----SFVSVRVVQPR  695 (695)
Q Consensus       657 aSgs~Dg~IriWD-l~tg~-~v~~~~~h~~----~VtsVaf~sPd  695 (695)
                      |+-. ||.|-+|| .++-+ ++..+.....    .+..++| .|.
T Consensus       212 cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ay-cPt  254 (783)
T KOG1008|consen  212 CSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAY-CPT  254 (783)
T ss_pred             eccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEe-ccC
Confidence            5544 99999999 44432 3333322222    3788888 773

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.08  E-value=0.016  Score=52.41  Aligned_cols=102  Identities=21%  Similarity=0.207  Sum_probs=68.5

Q ss_pred             eEEEEEc---CCC-CEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE
Q 005473          558 VESCHFS---PDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (695)
Q Consensus       558 V~~v~fs---pdg-~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l  633 (695)
                      |+++++.   .|| +.|++|+.|..||||+-+  +.+..+.. .+.|++++-... ..++.+-.+|+|-+|+-....   
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl---   74 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL---   74 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCccee---
Confidence            4555554   344 479999999999999854  56666665 456777776665 679999999999999875432   


Q ss_pred             EEEecCCCCeEEEEEec---CCCeEEEEEeCCCcEEE
Q 005473          634 RTFTGHSTTVMSLDFHP---SKEDLLCSCDNNSEIRY  667 (695)
Q Consensus       634 ~~~~gh~~~V~sl~fsp---dg~~llaSgs~Dg~Iri  667 (695)
                      .... .+..++++++..   ||..-|++|-.+|.|-+
T Consensus        75 WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   75 WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            2222 223466666543   34445668877887753

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.07  E-value=0.0044  Score=70.89  Aligned_cols=135  Identities=15%  Similarity=0.124  Sum_probs=95.5

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee--
Q 005473          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--  632 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l-~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~--  632 (695)
                      ..|.--+++..+++|+.|+.-|.|++|+-.+++....- .+-.+.+..+..+++..++|.|+..|.|.|+-+......  
T Consensus        34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~  113 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL  113 (726)
T ss_pred             ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence            33555556667899999999999999998776654332 334566667778888888899999999999987653321  


Q ss_pred             --EEEE-ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC----eEEEEEecCCCcEEEEEE
Q 005473          633 --LRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       633 --l~~~-~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg----~~v~~~~~h~~~VtsVaf  691 (695)
                        +..+ ..|...|++++|++++..+ ++|+..|.|.+-.++..    ..+..+-.-.+.|..|.+
T Consensus       114 ~~~t~~d~~~~~rVTal~Ws~~~~k~-ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~  178 (726)
T KOG3621|consen  114 DYVTPCDKSHKCRVTALEWSKNGMKL-YSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDY  178 (726)
T ss_pred             eeeccccccCCceEEEEEecccccEE-eecCCCceEEEEEechhhhhccccceeeccCcceEEeec
Confidence              1111 2367889999999999854 59999999999988772    223333344556665554

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.07  E-value=0.0022  Score=72.42  Aligned_cols=92  Identities=17%  Similarity=0.191  Sum_probs=74.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeE-EEEEecCCCeEEEEEeCCCcEEEEECCCCeE
Q 005473          597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSC  675 (695)
Q Consensus       597 ~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~-sl~fspdg~~llaSgs~Dg~IriWDl~tg~~  675 (695)
                      .-.|.-+.|+|...++|++..+|.|-+..+.- . .+.++.-|...|+ +++|.|||+ +++.|-.||+|++-|+.++..
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~-q-Rlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNW-Q-RLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEecc-c-eeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCc
Confidence            34578899999999999999999998888873 2 3677776666676 999999988 888999999999999999887


Q ss_pred             EEEEe-cCCCcEEEEEE
Q 005473          676 AGVFK-NFFESFVSVRV  691 (695)
Q Consensus       676 v~~~~-~h~~~VtsVaf  691 (695)
                      +..+. .-..+|+++-|
T Consensus        97 l~~~~~s~e~~is~~~w  113 (665)
T KOG4640|consen   97 LVSFLFSVETDISKGIW  113 (665)
T ss_pred             eeccccccccchheeec
Confidence            77632 34467777777

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.04  E-value=0.016  Score=69.96  Aligned_cols=113  Identities=19%  Similarity=0.262  Sum_probs=76.2

Q ss_pred             EEEEEcCCCCEEEEEe----CC-CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEe---CCCeEEEEECCCCC
Q 005473          559 ESCHFSPDGKLLATGG----HD-KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS---ADRTVRVWDTENPD  630 (695)
Q Consensus       559 ~~v~fspdg~~LaSgs----~D-g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs---~DgtIrvWDl~t~~  630 (695)
                      +.|+|--||.++|+..    .+ ++|+|||-+ +..-.+-+...+.=.+++|-|.|.++++-.   .|..|.+|.-..-.
T Consensus       199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~  277 (1265)
T KOG1920|consen  199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR  277 (1265)
T ss_pred             ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc
Confidence            5699999999998832    24 899999987 444333333445556899999999988863   36678888765321


Q ss_pred             ee--EEEEecCCCCeEEEEEecCCCeEEEE---EeCCCcEEEEECCCC
Q 005473          631 YS--LRTFTGHSTTVMSLDFHPSKEDLLCS---CDNNSEIRYWSINNG  673 (695)
Q Consensus       631 ~~--l~~~~gh~~~V~sl~fspdg~~llaS---gs~Dg~IriWDl~tg  673 (695)
                      .-  +..+..-...|..++|+.++. +|+.   +.....|++|-+.+.
T Consensus       278 hg~f~l~~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  278 HGEFVLPFPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             ccccccCCcccccchheeeecCCCC-ceeeeecccccceEEEEEecCe
Confidence            10  111222233489999999987 5554   455556999998765

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.01  E-value=0.012  Score=64.69  Aligned_cols=111  Identities=14%  Similarity=0.026  Sum_probs=77.0

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC-CCeEE
Q 005473          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMS  645 (695)
Q Consensus       567 g~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~-~~V~s  645 (695)
                      +..++.++.+|.++.||..+++.+..... . .......  .+..|+.++.||.|+.+|..+++. +....... ..+.+
T Consensus       241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~-~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~-~W~~~~~~~~~~ss  315 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLRSGRVLWKRDA-S-SYQGPAV--DDNRLYVTDADGVVVALDRRSGSE-LWKNDELKYRQLTA  315 (377)
T ss_pred             CCEEEEEEcCCEEEEEECCCCcEEEeecc-C-CccCceE--eCCEEEEECCCCeEEEEECCCCcE-EEccccccCCcccc
Confidence            45788888899999999999988776642 1 1112222  467888888999999999998764 43332211 12233


Q ss_pred             EEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCc
Q 005473          646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFES  685 (695)
Q Consensus       646 l~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~  685 (695)
                      ....  +. .++.++.||.|++||..+|+.+..++.+...
T Consensus       316 p~i~--g~-~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~  352 (377)
T TIGR03300       316 PAVV--GG-YLVVGDFEGYLHWLSREDGSFVARLKTDGSG  352 (377)
T ss_pred             CEEE--CC-EEEEEeCCCEEEEEECCCCCEEEEEEcCCCc
Confidence            3332  34 4557888999999999999999988866543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.01  E-value=0.046  Score=64.08  Aligned_cols=130  Identities=11%  Similarity=0.121  Sum_probs=92.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC----CCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 005473          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  629 (695)
Q Consensus       554 H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~----t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~  629 (695)
                      ...++.+++.+.+-+.+|+|-.||.|..+.-+    .+........-..+|+.+.+.-++..++.......|.+|.+...
T Consensus       124 ~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr  203 (933)
T KOG2114|consen  124 NPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGR  203 (933)
T ss_pred             CCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCC
Confidence            35678999999999999999999999988421    11111122223688999999888776434444567999999854


Q ss_pred             CeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe-cCCCc
Q 005473          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-NFFES  685 (695)
Q Consensus       630 ~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~-~h~~~  685 (695)
                      ...+..+..|...+.|..|++....++|++  +..|.+||......-..|. +|+.-
T Consensus       204 ~p~~~~ld~~G~~lnCss~~~~t~qfIca~--~e~l~fY~sd~~~~cfaf~~g~kk~  258 (933)
T KOG2114|consen  204 TPSLKVLDNNGISLNCSSFSDGTYQFICAG--SEFLYFYDSDGRGPCFAFEVGEKKE  258 (933)
T ss_pred             CcceeeeccCCccceeeecCCCCccEEEec--CceEEEEcCCCcceeeeecCCCeEE
Confidence            434566788888899999997655466555  4579999988666666666 66543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.98  E-value=0.14  Score=51.88  Aligned_cols=106  Identities=18%  Similarity=0.116  Sum_probs=70.3

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEecccCCC----------eEEEEEcCCCCEEEEEeCCCe-EEEEECCCCCeeEE
Q 005473          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----------ITDVRFSPSLSRLATSSADRT-VRVWDTENPDYSLR  634 (695)
Q Consensus       566 dg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~----------V~~v~~spdg~~LaTgs~Dgt-IrvWDl~t~~~~l~  634 (695)
                      ++..++.+..++.|..+|+++|+.+.....+...          +..-....++ .++.++.++. +.+ |+.+++. +.
T Consensus       121 ~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~-~w  197 (238)
T PF13360_consen  121 DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEK-LW  197 (238)
T ss_dssp             ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEE-EE
T ss_pred             ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCE-EE
Confidence            3778888888999999999999998887654422          1122222234 7777777775 555 9999774 33


Q ss_pred             EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEE
Q 005473          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV  678 (695)
Q Consensus       635 ~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~  678 (695)
                      ...  ...+..+ ...++..++ .++.++.|.+||+++|+.+-.
T Consensus       198 ~~~--~~~~~~~-~~~~~~~l~-~~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  198 SKP--ISGIYSL-PSVDGGTLY-VTSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             EEC--SS-ECEC-EECCCTEEE-EEETTTEEEEEETTTTEEEEE
T ss_pred             Eec--CCCccCC-ceeeCCEEE-EEeCCCEEEEEECCCCCEEeE
Confidence            222  2333332 345566455 455899999999999987643

...

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=96.97  E-value=0.0012  Score=46.09  Aligned_cols=31  Identities=29%  Similarity=0.476  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHhcChHHHHHHHHhhcCCC
Q 005473            9 DKMLDVYIYDYLLKRKLHASAKAFQTEGKVS   39 (695)
Q Consensus         9 ~~~L~~yIydyl~k~~~~~tA~af~~e~~~~   39 (695)
                      +..|+..|++||.++|+.++|++|.+|.++.
T Consensus         3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~   33 (34)
T smart00667        3 RSELNRLILEYLLRNGYEETAETLQKESGLS   33 (34)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence            4578999999999999999999999998864

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.93  E-value=0.048  Score=58.02  Aligned_cols=136  Identities=15%  Similarity=0.137  Sum_probs=97.2

Q ss_pred             EEEEEcC-CCCEEEEEeCCCc-EEEEECCCCeEEEEecccCCCe--EEEEEcCCCCEEEEE-----eCCCeEEEEECCCC
Q 005473          559 ESCHFSP-DGKLLATGGHDKK-AVLWCTESFTVKSTLEEHTQWI--TDVRFSPSLSRLATS-----SADRTVRVWDTENP  629 (695)
Q Consensus       559 ~~v~fsp-dg~~LaSgs~Dg~-V~IWDl~t~~~~~~l~~H~~~V--~~v~~spdg~~LaTg-----s~DgtIrvWDl~t~  629 (695)
                      ..++.+| ....++.+-.-|+ ..+||+.+++....+....+.-  =.-+|++||++|+|.     ...|.|-|||+...
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~   87 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG   87 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence            4577888 5556677766654 6689999998887775433322  256799999999886     34678999999955


Q ss_pred             CeeEEEEecCCCCeEEEEEecCCCeEEEEEe-----------------CCCcEEEEECCCCeEEEEEe----cCCCcEEE
Q 005473          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-----------------NNSEIRYWSINNGSCAGVFK----NFFESFVS  688 (695)
Q Consensus       630 ~~~l~~~~gh~~~V~sl~fspdg~~llaSgs-----------------~Dg~IriWDl~tg~~v~~~~----~h~~~Vts  688 (695)
                      -..+..|..|.-.--.+.+.|||+.|++.-+                 .+..+.+-|..+|+.+....    -|.-.|..
T Consensus        88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH  167 (305)
T PF07433_consen   88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH  167 (305)
T ss_pred             cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence            5567788877666677889999976664422                 23467777888898887744    37778888


Q ss_pred             EEEeCCC
Q 005473          689 VRVVQPR  695 (695)
Q Consensus       689 Vaf~sPd  695 (695)
                      +++ .++
T Consensus       168 La~-~~~  173 (305)
T PF07433_consen  168 LAV-DGD  173 (305)
T ss_pred             EEe-cCC
Confidence            887 654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.88  E-value=0.053  Score=59.53  Aligned_cols=146  Identities=11%  Similarity=0.016  Sum_probs=87.9

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~  585 (695)
                      +..+..++.++.|..++..++.       .+|.....          .  ........  ++..++.++.|+.|..+|..
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~-------~~W~~~~~----------~--~~~~~p~v--~~~~v~v~~~~g~l~ald~~  123 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGK-------RLWRVDLD----------E--RLSGGVGA--DGGLVFVGTEKGEVIALDAE  123 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCc-------EeeeecCC----------C--CcccceEE--cCCEEEEEcCCCEEEEEECC
Confidence            3566777788888888654442       12211111          0  00011222  46678888899999999999


Q ss_pred             CCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCe-----EEEEEecCCCeEEEEEe
Q 005473          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-----MSLDFHPSKEDLLCSCD  660 (695)
Q Consensus       586 t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V-----~sl~fspdg~~llaSgs  660 (695)
                      +++.+...... +.+.+.-.. .+..++.++.|+.|+.||.++++. +..+......+     .+..+. + . .++.+.
T Consensus       124 tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~-~W~~~~~~~~~~~~~~~sp~~~-~-~-~v~~~~  197 (377)
T TIGR03300       124 DGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGER-LWTYSRVTPALTLRGSASPVIA-D-G-GVLVGF  197 (377)
T ss_pred             CCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCce-eeEEccCCCceeecCCCCCEEE-C-C-EEEEEC
Confidence            99988766532 222211111 245777788899999999998774 44443222111     112222 2 2 455777


Q ss_pred             CCCcEEEEECCCCeEEEE
Q 005473          661 NNSEIRYWSINNGSCAGV  678 (695)
Q Consensus       661 ~Dg~IriWDl~tg~~v~~  678 (695)
                      .++.|..+|.++|+.+..
T Consensus       198 ~~g~v~ald~~tG~~~W~  215 (377)
T TIGR03300       198 AGGKLVALDLQTGQPLWE  215 (377)
T ss_pred             CCCEEEEEEccCCCEeee
Confidence            889999999999876644

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.77  E-value=0.016  Score=69.11  Aligned_cols=99  Identities=10%  Similarity=0.114  Sum_probs=72.7

Q ss_pred             CEEEEEeCCCcEEEEECCCCe--EEEE-e--cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCC
Q 005473          568 KLLATGGHDKKAVLWCTESFT--VKST-L--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT  642 (695)
Q Consensus       568 ~~LaSgs~Dg~V~IWDl~t~~--~~~~-l--~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~  642 (695)
                      .-.+.|-.+..++.||.+-..  ++.. .  ........|++-..+ .+||+|+.+|.||+||- .++.+...+.+...+
T Consensus       543 e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~p  620 (794)
T PF08553_consen  543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTED-GYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDP  620 (794)
T ss_pred             CceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCC-ceEEEEeCCCcEEeecc-cchhhhhcCCCCCCC
Confidence            345677778899999987532  2211 1  112344667766554 69999999999999994 344445667788899


Q ss_pred             eEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 005473          643 VMSLDFHPSKEDLLCSCDNNSEIRYWSI  670 (695)
Q Consensus       643 V~sl~fspdg~~llaSgs~Dg~IriWDl  670 (695)
                      |.+|+.+.||+++||||  +..|.++|.
T Consensus       621 I~~iDvt~DGkwilaTc--~tyLlLi~t  646 (794)
T PF08553_consen  621 IIGIDVTADGKWILATC--KTYLLLIDT  646 (794)
T ss_pred             eeEEEecCCCcEEEEee--cceEEEEEE
Confidence            99999999999999887  568888886

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=96.61  E-value=0.0079  Score=66.53  Aligned_cols=111  Identities=22%  Similarity=0.190  Sum_probs=83.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCC--------------
Q 005473          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--------------  619 (695)
Q Consensus       554 H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~Dg--------------  619 (695)
                      -.-+|..++|||.|++|++...-+ |.+|+......+..+.  ...|..+.|+|.+.+|+|=+...              
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~  107 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK  107 (561)
T ss_pred             cCcchhheeecCcchheehhhccc-eEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence            344688999999999999987665 9999987766554443  35689999999999999876533              


Q ss_pred             -eEEEEECCCCCeeEEEEecCCCC--eE-EEEEecCCCeEEEEEeCCCcEEEEEC
Q 005473          620 -TVRVWDTENPDYSLRTFTGHSTT--VM-SLDFHPSKEDLLCSCDNNSEIRYWSI  670 (695)
Q Consensus       620 -tIrvWDl~t~~~~l~~~~gh~~~--V~-sl~fspdg~~llaSgs~Dg~IriWDl  670 (695)
                       .+.|||+.++.. +..+.+....  .+ -+.|+-+..+.+-.  ....|+|+++
T Consensus       108 n~~~vwd~~sg~i-v~sf~~~~q~~~~Wp~~k~s~~D~y~ARv--v~~sl~i~e~  159 (561)
T COG5354         108 NNVFVWDIASGMI-VFSFNGISQPYLGWPVLKFSIDDKYVARV--VGSSLYIHEI  159 (561)
T ss_pred             CceeEEeccCcee-EeeccccCCcccccceeeeeecchhhhhh--ccCeEEEEec
Confidence             499999998765 7888776655  55 67788776633222  3457999997

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=96.55  E-value=0.07  Score=59.82  Aligned_cols=159  Identities=18%  Similarity=0.179  Sum_probs=94.8

Q ss_pred             cccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEE
Q 005473          533 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL  612 (695)
Q Consensus       533 ~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~L  612 (695)
                      ...+||..+|...+.+.++++....-.-+.||.|++++|.-..| .|.||+.....++..-.-.-..|....|+|.+.+|
T Consensus       283 ~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~ll  361 (698)
T KOG2314|consen  283 QLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLL  361 (698)
T ss_pred             eEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceE
Confidence            34567777776666666665555555678999999999987765 59999987755443322334678899999998887


Q ss_pred             EEEeC-----CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEe---------CCCcEEEEECCCCeEEEE
Q 005473          613 ATSSA-----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD---------NNSEIRYWSINNGSCAGV  678 (695)
Q Consensus       613 aTgs~-----DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs---------~Dg~IriWDl~tg~~v~~  678 (695)
                      |-=..     -..+-+-.+.++.. +++..-|.-.=+.+-|-..|.+|.+-..         .=..+-||.++....-..
T Consensus       362 AYwtpe~~~~parvtL~evPs~~~-iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve  440 (698)
T KOG2314|consen  362 AYWTPETNNIPARVTLMEVPSKRE-IRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVE  440 (698)
T ss_pred             EEEcccccCCcceEEEEecCccce-eeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCce
Confidence            65321     23466666665443 5555544444455667777774443221         112345565554332211


Q ss_pred             EecCCCcEEEEEEeCC
Q 005473          679 FKNFFESFVSVRVVQP  694 (695)
Q Consensus       679 ~~~h~~~VtsVaf~sP  694 (695)
                      .-.-++.|...+| -|
T Consensus       441 ~velke~vi~FaW-EP  455 (698)
T KOG2314|consen  441 VVELKESVIAFAW-EP  455 (698)
T ss_pred             eeecchheeeeee-cc
Confidence            1234455566666 55

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.51  E-value=0.064  Score=55.24  Aligned_cols=109  Identities=10%  Similarity=-0.023  Sum_probs=79.1

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCe-EE
Q 005473          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-MS  645 (695)
Q Consensus       567 g~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V-~s  645 (695)
                      ..+++.|++.+.+.--|..+++.+..-. -...|.+-+.- -|.+++.|+..|.+++.+..++.. +..+.... .| ..
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~-~w~f~~~~-~vk~~   98 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQ-IWNFVILE-TVKVR   98 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhh-eeeeeehh-hhccc
Confidence            4578889999999999999988775432 12333332222 367899999999999999999865 44444322 23 22


Q ss_pred             EEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473          646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  680 (695)
Q Consensus       646 l~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~  680 (695)
                      ....+++. ++..|+.|+..+..|.++..|+.+.+
T Consensus        99 a~~d~~~g-lIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen   99 AQCDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             eEEcCCCc-eEEEecCCCcEEEecccccceEEecc
Confidence            33466666 77899999999999999999998877

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.50  E-value=0.044  Score=63.41  Aligned_cols=64  Identities=8%  Similarity=0.020  Sum_probs=47.9

Q ss_pred             CCCEEEEEeCCCeEEEEECCC----CCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe
Q 005473          608 SLSRLATSSADRTVRVWDTEN----PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS  674 (695)
Q Consensus       608 dg~~LaTgs~DgtIrvWDl~t----~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~  674 (695)
                      +|++...  .+++|.|.|.++    +...+..+. -......|+++|||+++++++..+.+|.|.|+.+.+
T Consensus       287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k  354 (635)
T PRK02888        287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD  354 (635)
T ss_pred             CCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence            5555544  257899999987    333233333 345678899999999999999999999999998754

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.49  E-value=0.24  Score=55.10  Aligned_cols=115  Identities=17%  Similarity=0.186  Sum_probs=75.1

Q ss_pred             eEEEEEcCCCCEEEEE-eCC----CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCC-----------eE
Q 005473          558 VESCHFSPDGKLLATG-GHD----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-----------TV  621 (695)
Q Consensus       558 V~~v~fspdg~~LaSg-s~D----g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~Dg-----------tI  621 (695)
                      +..+.++|||++||.+ +..    ..|+|+|+++++.+........ ...+.|.+++..|+....|.           .|
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            4468899999988755 333    4599999999987653321111 22399999988776654333           38


Q ss_pred             EEEECCCCCee-EEEEecCCCC--eEEEEEecCCCeEEEEEeCCC---cEEEEECCCC
Q 005473          622 RVWDTENPDYS-LRTFTGHSTT--VMSLDFHPSKEDLLCSCDNNS---EIRYWSINNG  673 (695)
Q Consensus       622 rvWDl~t~~~~-l~~~~gh~~~--V~sl~fspdg~~llaSgs~Dg---~IriWDl~tg  673 (695)
                      ++|.+.++... ...+.+....  ...+.+++|++++++......   .|++.|+..+
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence            88898876432 3444443332  578889999998887665444   4888888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.39  E-value=0.0055  Score=66.84  Aligned_cols=139  Identities=14%  Similarity=0.124  Sum_probs=93.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---CeEEEEecccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCC
Q 005473          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTEN  628 (695)
Q Consensus       553 ~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t---~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~-DgtIrvWDl~t  628 (695)
                      -|.+.|+.|... -.+++.+|+.||.++.|--..   .+.+..+..|-+.|.+++.+-++.++.|++. |..++++|+.+
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn   85 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN   85 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence            477767766554 567999999999999996432   3455667789999999999999999999888 99999999986


Q ss_pred             CCee-EEEEecCCCCeEEEEEecCCC--eEEEEEeCCCcEEEEECCCCe-EEEEEe-cCCCcEEEEEEeCC
Q 005473          629 PDYS-LRTFTGHSTTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNGS-CAGVFK-NFFESFVSVRVVQP  694 (695)
Q Consensus       629 ~~~~-l~~~~gh~~~V~sl~fspdg~--~llaSgs~Dg~IriWDl~tg~-~v~~~~-~h~~~VtsVaf~sP  694 (695)
                      -... ...+.-..+.+..+ .++...  .+.++.-.++.|.|+|-+..- .+..++ -|..+|..+.+ .|
T Consensus        86 ~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y-~q  154 (558)
T KOG0882|consen   86 FDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRY-NQ  154 (558)
T ss_pred             cchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEe-ec
Confidence            5431 11111112222211 122211  244445578999999987654 333333 68999999887 54

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.37  E-value=0.022  Score=63.90  Aligned_cols=116  Identities=22%  Similarity=0.209  Sum_probs=79.3

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe---CC-CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEE-EeCCCe--EEEEE
Q 005473          553 ASTSKVESCHFSPDGKLLATGG---HD-KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADRT--VRVWD  625 (695)
Q Consensus       553 ~H~~~V~~v~fspdg~~LaSgs---~D-g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaT-gs~Dgt--IrvWD  625 (695)
                      .....+..-+|++++..++...   .. ..+.++|+.+++....+. ..+.-...+|+|||+.|+. ...||.  |++.|
T Consensus       190 ~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~d  268 (425)
T COG0823         190 DSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMD  268 (425)
T ss_pred             ccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEc
Confidence            3445577889999998655442   22 358999999887665554 2344457889999987754 456665  67778


Q ss_pred             CCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 005473          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (695)
Q Consensus       626 l~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~  671 (695)
                      +....  +..+..-.+.-+.-.|+|||+.++++.+..|.-.||-++
T Consensus       269 l~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~  312 (425)
T COG0823         269 LDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYD  312 (425)
T ss_pred             CCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEEC
Confidence            77654  333444444445778999999999999888876666543

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.35  E-value=0.034  Score=62.11  Aligned_cols=116  Identities=10%  Similarity=0.126  Sum_probs=79.0

Q ss_pred             ecCCCCCeEEEEEcCCCCE-------EEEEeCCCcEEEEECCCCe--EEEEecccC----CCeEEEEEcCCCCEEEEEeC
Q 005473          551 IPASTSKVESCHFSPDGKL-------LATGGHDKKAVLWCTESFT--VKSTLEEHT----QWITDVRFSPSLSRLATSSA  617 (695)
Q Consensus       551 l~~H~~~V~~v~fspdg~~-------LaSgs~Dg~V~IWDl~t~~--~~~~l~~H~----~~V~~v~~spdg~~LaTgs~  617 (695)
                      ++-|.+ |+-+.+.|+.+.       -+.|-.|..|+-||.+-..  .+....+|.    ....|++-- ...+||.||.
T Consensus       372 Wk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT-~sG~IvvgS~  449 (644)
T KOG2395|consen  372 WKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT-ESGYIVVGSL  449 (644)
T ss_pred             eeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeec-CCceEEEeec
Confidence            333444 666777775442       2456668889999987322  222223331    223344433 3569999999


Q ss_pred             CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 005473          618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (695)
Q Consensus       618 DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~  671 (695)
                      +|.||+||- .+......+.+...+|..|+.+.+|+++|++|  +.++.+.|+.
T Consensus       450 ~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t~  500 (644)
T KOG2395|consen  450 KGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDTL  500 (644)
T ss_pred             CCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEEe
Confidence            999999998 44544567888889999999999999998777  5678877764

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.34  E-value=0.0089  Score=69.40  Aligned_cols=110  Identities=15%  Similarity=0.229  Sum_probs=85.5

Q ss_pred             EEEEEcCCCCEEEEEeC----CCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 005473          559 ESCHFSPDGKLLATGGH----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (695)
Q Consensus       559 ~~v~fspdg~~LaSgs~----Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~  634 (695)
                      +-..|+|...++++++.    .|.|.||- ++|++-+.++. .-.+++++|+|..-.|+.|-.-|.+.||...+.+. -.
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-ht   95 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-HT   95 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCcee-ee
Confidence            44678888888888764    58888874 56665544432 23456799999888889998899999999987554 34


Q ss_pred             EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (695)
Q Consensus       635 ~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t  672 (695)
                      ....|...|..+.|+++|. .++++..-|.|.+|.+.-
T Consensus        96 v~~th~a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   96 VVETHPAPIQGLDWSHDGT-VLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             eccCCCCCceeEEecCCCC-eEEEcCCCceeEEEEeee
Confidence            4556999999999999998 455999999999998763

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.32  E-value=0.74  Score=51.34  Aligned_cols=135  Identities=18%  Similarity=0.178  Sum_probs=78.0

Q ss_pred             eeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe--cc------cCCCeEEEEEcC-----CC-
Q 005473          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EE------HTQWITDVRFSP-----SL-  609 (695)
Q Consensus       544 ~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l--~~------H~~~V~~v~~sp-----dg-  609 (695)
                      .+.+...+....++|++|+.| |=-++|.|..||.+.|.|++.-..+..-  ..      ....|+++.|.-     |+ 
T Consensus        75 gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y  153 (395)
T PF08596_consen   75 GFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY  153 (395)
T ss_dssp             EEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred             ccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence            467777788889999999998 4458999999999999999887776542  22      235688888862     22 


Q ss_pred             --CEEEEEeCCCeEEEEECCC---CCeeE---EEEecCCCCeEEEE-EecC--------------------CCeEEEEEe
Q 005473          610 --SRLATSSADRTVRVWDTEN---PDYSL---RTFTGHSTTVMSLD-FHPS--------------------KEDLLCSCD  660 (695)
Q Consensus       610 --~~LaTgs~DgtIrvWDl~t---~~~~l---~~~~gh~~~V~sl~-fspd--------------------g~~llaSgs  660 (695)
                        -+|++|...|.+.+|.+.-   +...+   .....+.+.|..+. |+.+                    -+.+++.++
T Consensus       154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS  233 (395)
T PF08596_consen  154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS  233 (395)
T ss_dssp             EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred             cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence              3688999999999997741   22221   11224556666665 3221                    122444554


Q ss_pred             CCCcEEEEECCCCeEEEEEe
Q 005473          661 NNSEIRYWSINNGSCAGVFK  680 (695)
Q Consensus       661 ~Dg~IriWDl~tg~~v~~~~  680 (695)
                       +..|||+...+.++..+..
T Consensus       234 -e~~irv~~~~~~k~~~K~~  252 (395)
T PF08596_consen  234 -ESDIRVFKPPKSKGAHKSF  252 (395)
T ss_dssp             -SSEEEEE-TT---EEEEE-
T ss_pred             -ccceEEEeCCCCcccceee
Confidence             6789999998887766554

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.26  E-value=0.08  Score=56.92  Aligned_cols=134  Identities=12%  Similarity=0.131  Sum_probs=90.5

Q ss_pred             CeEEEEEcCCCCEEEEEeC---------CCcEEEEECC-CCeEEEEecccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEE
Q 005473          557 KVESCHFSPDGKLLATGGH---------DKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWD  625 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~---------Dg~V~IWDl~-t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~-DgtIrvWD  625 (695)
                      ..+.+...|+|++.++...         -..-.||.+. .+..++.+..|-..-+.|+|+||++.|+.+.. .+.|+-|+
T Consensus       112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~  191 (307)
T COG3386         112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYD  191 (307)
T ss_pred             CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence            3567888899987776544         1122466655 56666666666666788999999988777654 57888887


Q ss_pred             CCC--C----CeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC-CcEEEEECCCCeEEEEEecCCCcEEEEEEe
Q 005473          626 TEN--P----DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAGVFKNFFESFVSVRVV  692 (695)
Q Consensus       626 l~t--~----~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D-g~IriWDl~tg~~v~~~~~h~~~VtsVaf~  692 (695)
                      +..  +    ......+..+.+..=.++...+|. +++++..+ +.|.+|+.. |+.+..++.+...+++++|-
T Consensus       192 ~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~Fg  263 (307)
T COG3386         192 LDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFG  263 (307)
T ss_pred             cCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEe
Confidence            762  1    111122223345555677777877 44344434 399999988 99999999887788888883

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.25  E-value=0.33  Score=52.23  Aligned_cols=112  Identities=12%  Similarity=0.119  Sum_probs=72.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEec-ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-
Q 005473          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-  630 (695)
Q Consensus       554 H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~-~~~~l~-~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~-  630 (695)
                      ..++|++|+-- .++ |+.|. ++.|++|++...+ .+..-. .....|+++...  +.+++.|...+.|.++..+... 
T Consensus        87 ~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~  161 (321)
T PF03178_consen   87 VKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENN  161 (321)
T ss_dssp             ESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE
T ss_pred             ecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCC
Confidence            46789998877 444 44444 5889999998777 443322 123466666665  5699999888888877544322 


Q ss_pred             -eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 005473          631 -YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (695)
Q Consensus       631 -~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~  671 (695)
                       ..+........+|++++|-++++ .++.++.+|.|.++...
T Consensus       162 ~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  162 KLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             -EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-
T ss_pred             EEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEEC
Confidence             22222233456789999997775 67799999999999886

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.15  E-value=0.1  Score=58.59  Aligned_cols=164  Identities=14%  Similarity=0.108  Sum_probs=96.2

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeC-CCc--EEEEE
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKK--AVLWC  583 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~-Dg~--V~IWD  583 (695)
                      .++.+...|++..+|.......               ....   +..-.+.-..=.|+|||++|+-.+. .|.  |.++|
T Consensus       251 ~l~f~~~rdg~~~iy~~dl~~~---------------~~~~---Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~  312 (425)
T COG0823         251 KLAFSSSRDGSPDIYLMDLDGK---------------NLPR---LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYD  312 (425)
T ss_pred             EEEEEECCCCCccEEEEcCCCC---------------ccee---cccCCccccCccCCCCCCEEEEEeCCCCCcceEEEC
Confidence            6777777888888885533211               0111   2222222235678999998776654 454  55556


Q ss_pred             CCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCC-Ce--EEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEe
Q 005473          584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RT--VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (695)
Q Consensus       584 l~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~D-gt--IrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs  660 (695)
                      ++..... .+....+.-.+-.|+|+|++|+..+.. |.  |.+.|+.++.. ++.+. +......-+|.+++..++.+++
T Consensus       313 ~~g~~~~-riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt-~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         313 LEGSQVT-RLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILT-STYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             CCCCcee-EeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEcc-ccccCCCCCcCCCCceEEEecc
Confidence            6665543 333333333388899999998777643 43  77777766553 34443 3344556788999998877766


Q ss_pred             CCCcEEEEEC-CCCeEEEEEecCCCcEEEEEE
Q 005473          661 NNSEIRYWSI-NNGSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       661 ~Dg~IriWDl-~tg~~v~~~~~h~~~VtsVaf  691 (695)
                      .-+.=.++.+ .+++....+..-.+.+...+|
T Consensus       390 ~~~~~~l~~~s~~g~~~~~~~~~~~~~~~p~w  421 (425)
T COG0823         390 QGGGSVLSLVSLDGRVSRPLPLADGDVRVPAW  421 (425)
T ss_pred             CCCCceEEEeeccceeEEEEeccCcceecccc
Confidence            5433333333 345555555544455555555

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.12  E-value=0.2  Score=51.68  Aligned_cols=84  Identities=11%  Similarity=0.012  Sum_probs=59.5

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEE
Q 005473          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS  645 (695)
Q Consensus       566 dg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~s  645 (695)
                      -|.+++.|+..|.+++.+++++.....+..-...-......+++.++..|+.|++++..|.++.. |+.......+.-.+
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~-cVykskcgG~~f~s  140 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG-CVYKSKCGGGTFVS  140 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccc-eEEecccCCceecc
Confidence            46789999999999999999997776665432222234456789999999999999999999854 45554433332333


Q ss_pred             EEEec
Q 005473          646 LDFHP  650 (695)
Q Consensus       646 l~fsp  650 (695)
                      -++.|
T Consensus       141 P~i~~  145 (354)
T KOG4649|consen  141 PVIAP  145 (354)
T ss_pred             ceecC
Confidence            44455

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=96.10  E-value=0.43  Score=49.93  Aligned_cols=131  Identities=20%  Similarity=0.222  Sum_probs=82.3

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCC--eEEEEeccc---CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE
Q 005473          561 CHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLEEH---TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (695)
Q Consensus       561 v~fspdg~~LaSgs~Dg~V~IWDl~t~--~~~~~l~~H---~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~  635 (695)
                      ++.+.+|++||.-- |..|-|-..+..  .++.+..-.   .-.=..++|+||+.+||.+...|+|+|||+-...  +..
T Consensus         3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~--lf~   79 (282)
T PF15492_consen    3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE--LFV   79 (282)
T ss_pred             eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce--eEE
Confidence            45678898887755 667777765432  122222112   2234679999999999999999999999997532  222


Q ss_pred             Eec-------CCCCeEEEEEecCC-----CeEEEEEeCCCcEEEEECCC-----CeEEEEEe---cCCCcEEEEEEeCCC
Q 005473          636 FTG-------HSTTVMSLDFHPSK-----EDLLCSCDNNSEIRYWSINN-----GSCAGVFK---NFFESFVSVRVVQPR  695 (695)
Q Consensus       636 ~~g-------h~~~V~sl~fspdg-----~~llaSgs~Dg~IriWDl~t-----g~~v~~~~---~h~~~VtsVaf~sPd  695 (695)
                      +..       -...|..+.|..-.     ...|..-..+|.++-|-+..     .+...+|.   .+...|+++.| ||.
T Consensus        80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy-~p~  158 (282)
T PF15492_consen   80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVY-HPK  158 (282)
T ss_pred             cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEE-cCC
Confidence            221       12456777775432     22333555688888887632     23444444   34679999999 884

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.08  E-value=1.4  Score=45.94  Aligned_cols=123  Identities=12%  Similarity=0.262  Sum_probs=75.7

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe----E--EEEe-----cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 005473          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT----V--KSTL-----EEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~----~--~~~l-----~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWD  625 (695)
                      -...|++..++.++++.-.++.+.++++....    .  ...+     ..+...+..++|+|.+..|+.+-...-.+||.
T Consensus        66 D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~  145 (248)
T PF06977_consen   66 DYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYE  145 (248)
T ss_dssp             SEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEE
T ss_pred             CceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEE
Confidence            37889998888888777678999999883311    1  1111     12456689999999888887777666666666


Q ss_pred             CCC--CCeeE--EEEe------cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473          626 TEN--PDYSL--RTFT------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  680 (695)
Q Consensus       626 l~t--~~~~l--~~~~------gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~  680 (695)
                      ++.  ....+  ....      .....+.++.++|....+++.++.+..|.++| .+|+.+..+.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~  209 (248)
T PF06977_consen  146 VNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLS  209 (248)
T ss_dssp             EESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE
T ss_pred             EccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEE
Confidence            653  11111  1111      23345789999999888999999999999999 6788777666

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.06  E-value=0.11  Score=60.36  Aligned_cols=103  Identities=17%  Similarity=0.117  Sum_probs=73.9

Q ss_pred             CCCCEEEEEeCCCcEEEEECCC-----CeEEEEecccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCe-------
Q 005473          565 PDGKLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDY-------  631 (695)
Q Consensus       565 pdg~~LaSgs~Dg~V~IWDl~t-----~~~~~~l~~H~~~V~~v~~spdg~~LaTgs-~DgtIrvWDl~t~~~-------  631 (695)
                      ++|++...+  +++|.|.|..+     .+.+..+. -....+.|.++|||+++++++ .+.+|.|.|+.+.+.       
T Consensus       286 kdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~  362 (635)
T PRK02888        286 KAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK  362 (635)
T ss_pred             hCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence            367776663  67899999987     34444443 356678999999999886665 589999999987442       


Q ss_pred             ----eEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473          632 ----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (695)
Q Consensus       632 ----~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t  672 (695)
                          .+....- ...-...+|.++|. .+.|.--|..|-.||+.+
T Consensus       363 ~~~~vvaevev-GlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        363 PRDAVVAEPEL-GLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ccceEEEeecc-CCCcceEEECCCCC-EEEeEeecceeEEEehHH
Confidence                1122221 22345788998886 777888899999999875

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.88  E-value=0.033  Score=64.01  Aligned_cols=105  Identities=12%  Similarity=0.082  Sum_probs=76.6

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~  585 (695)
                      +.+++-|+.-|.|.+|.-+.+.-.                  .....+-.+.+..+..+++..++|.|+..|.|.|+-+.
T Consensus        45 ~~~l~~GsS~G~lyl~~R~~~~~~------------------~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~  106 (726)
T KOG3621|consen   45 EEYLAMGSSAGSVYLYNRHTGEMR------------------KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLN  106 (726)
T ss_pred             CceEEEecccceEEEEecCchhhh------------------cccccCccceEEEEEecchhHhhhhhcCCceEEeehhh
Confidence            489999999999999855433210                  00111234446677788888899999999999999775


Q ss_pred             CCeE-----EEEe-cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005473          586 SFTV-----KSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (695)
Q Consensus       586 t~~~-----~~~l-~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t  628 (695)
                      ...+     +..+ ..|...|+|++|++++..|++|..-|+|.+-.++.
T Consensus       107 ~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  107 KELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            5322     1111 34788999999999999999999999998887776

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.86  E-value=0.3  Score=57.12  Aligned_cols=124  Identities=11%  Similarity=0.128  Sum_probs=80.4

Q ss_pred             eeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec-ccCCCeEEEEEc--CCCCEEEEEeCCCe
Q 005473          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFS--PSLSRLATSSADRT  620 (695)
Q Consensus       544 ~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~-~H~~~V~~v~~s--pdg~~LaTgs~Dgt  620 (695)
                      .+....++......+..+.-+.-++..++-+....+.|||++.+.....-. ...+.|.++.|.  |++..+++.|....
T Consensus        18 ~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~   97 (631)
T PF12234_consen   18 EWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHH   97 (631)
T ss_pred             EEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcE
Confidence            334444444444455666666666655555556789999999877543322 347889999995  57889999999999


Q ss_pred             EEEEECC-----CCC---eeEEE--EecCC-CCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 005473          621 VRVWDTE-----NPD---YSLRT--FTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSI  670 (695)
Q Consensus       621 IrvWDl~-----t~~---~~l~~--~~gh~-~~V~sl~fspdg~~llaSgs~Dg~IriWDl  670 (695)
                      |.+|--.     ...   .+++.  +..|+ ..|.+..|.++|. +++.+  +..+.|+|-
T Consensus        98 v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen   98 VLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGS--GNQLFVFDK  155 (631)
T ss_pred             EEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe-EEEEe--CCEEEEECC
Confidence            9998542     111   12222  23444 5799999999987 33333  356888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.83  E-value=0.094  Score=59.22  Aligned_cols=124  Identities=14%  Similarity=0.141  Sum_probs=68.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEE-ECCCCCee
Q 005473          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW-DTENPDYS  632 (695)
Q Consensus       554 H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvW-Dl~t~~~~  632 (695)
                      ..-....+.++|+|+++++++ ||...|+.....+....     +.-..++|.+. ..+|+-....+|.|+ +.....  
T Consensus        31 ~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~--  101 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----GSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEV--  101 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----EE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-T--
T ss_pred             CCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccccc-----CceeEEEEecC-ccEEEEECCCeEEEEEcCcccc--
Confidence            344478999999999999855 88888888555444322     23357788884 456666668889996 443221  


Q ss_pred             EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       633 l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      .+.+.-. ..+..+..   |. +|+..+ ++.|.+||+.+++.++.+...  +|..|.| +++
T Consensus       102 ~k~i~~~-~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~W-s~~  155 (443)
T PF04053_consen  102 VKSIKLP-FSVEKIFG---GN-LLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIW-SDD  155 (443)
T ss_dssp             T-----S-S-EEEEE----SS-SEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE--TT
T ss_pred             ceEEcCC-cccceEEc---Cc-EEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEE-ECC
Confidence            1222211 12333332   66 444444 448999999999999999744  3788888 764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=95.81  E-value=0.44  Score=58.16  Aligned_cols=135  Identities=19%  Similarity=0.222  Sum_probs=82.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECC----C-------------------CeEEEEeccc---------------
Q 005473          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE----S-------------------FTVKSTLEEH---------------  596 (695)
Q Consensus       555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~----t-------------------~~~~~~l~~H---------------  596 (695)
                      .+.|.+++|+||+.+++..+.+.++.+-+-.    .                   |+....|.|.               
T Consensus       109 d~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~  188 (1265)
T KOG1920|consen  109 DNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKA  188 (1265)
T ss_pred             cCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccccc
Confidence            4459999999999999999988888765320    0                   1111112211               


Q ss_pred             ------CCCeEEEEEcCCCCEEEEEe----CC-CeEEEEECCCCCeeEEEE-ecCCCCeEEEEEecCCCeEEEEE--eCC
Q 005473          597 ------TQWITDVRFSPSLSRLATSS----AD-RTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSC--DNN  662 (695)
Q Consensus       597 ------~~~V~~v~~spdg~~LaTgs----~D-gtIrvWDl~t~~~~l~~~-~gh~~~V~sl~fspdg~~llaSg--s~D  662 (695)
                            .+.-+.|+|.-||.++++..    .+ +.|+|||.. +.  +... ..-.+.-.+++|-|.|..+.+..  ++|
T Consensus       189 ~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~--Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd  265 (1265)
T KOG1920|consen  189 LEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GA--LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSD  265 (1265)
T ss_pred             ccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-ch--hhcccCcccccccceeecCCCCeEeeeeecCCC
Confidence                  11123599999999998842    24 889999987 22  1111 11123346799999887443322  356


Q ss_pred             CcEEEEECCCCeEEEE----EecCCCcEEEEEEeCC
Q 005473          663 SEIRYWSINNGSCAGV----FKNFFESFVSVRVVQP  694 (695)
Q Consensus       663 g~IriWDl~tg~~v~~----~~~h~~~VtsVaf~sP  694 (695)
                      +.|.+|.- +|-....    +......|..++| +-
T Consensus       266 ~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~W-ns  299 (1265)
T KOG1920|consen  266 SDIVFFER-NGLRHGEFVLPFPLDEKEVEELAW-NS  299 (1265)
T ss_pred             CcEEEEec-CCccccccccCCcccccchheeee-cC
Confidence            78999984 3433332    3333444788888 53

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=95.75  E-value=0.0038  Score=70.70  Aligned_cols=113  Identities=19%  Similarity=0.351  Sum_probs=79.6

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEE-CCCCCeeEE
Q 005473          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD-TENPDYSLR  634 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWD-l~t~~~~l~  634 (695)
                      .+.+++|-.+.+++.+|...+.|.++|++-.... .-.-.+..|..+.+.| .+.++++-. |+.|-+|| .++-+.++.
T Consensus       156 gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~-~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~  233 (783)
T KOG1008|consen  156 GQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS-VSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQ  233 (783)
T ss_pred             CccccccccCcchhhcccccchhhhhhhhhhhhh-hhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHH
Confidence            3568889889999999999999999999732221 1111234556667777 566776655 99999999 554443333


Q ss_pred             EEecCC----CCeEEEEEecCCCeEEEEEeCC-CcEEEEECC
Q 005473          635 TFTGHS----TTVMSLDFHPSKEDLLCSCDNN-SEIRYWSIN  671 (695)
Q Consensus       635 ~~~gh~----~~V~sl~fspdg~~llaSgs~D-g~IriWDl~  671 (695)
                      .+...+    ..+..++|+|..+.+++++..| ++|+.+|+.
T Consensus       234 ~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  234 IILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             HHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            333222    3489999999988888888755 689999985

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.52  E-value=0.042  Score=65.84  Aligned_cols=100  Identities=20%  Similarity=0.262  Sum_probs=71.7

Q ss_pred             CCEEEEEeCCCcEEEEECCCC-eEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEE
Q 005473          567 GKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS  645 (695)
Q Consensus       567 g~~LaSgs~Dg~V~IWDl~t~-~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~s  645 (695)
                      +-+++.|+..|.|-..|+... +....=+.-.++|++++|+.+|.+++.|-.+|.|.+||+..++. ++.+..|..+++.
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~-l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI-LKVITEHGAPVTG  177 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc-eeeeeecCCccce
Confidence            446888888888998888653 21111123368999999999999999999999999999998664 7777766655555


Q ss_pred             E---EEecCCCeEEEEEeCCCcEEEEEC
Q 005473          646 L---DFHPSKEDLLCSCDNNSEIRYWSI  670 (695)
Q Consensus       646 l---~fspdg~~llaSgs~Dg~IriWDl  670 (695)
                      +   .+..++. .+.+++..|.  +|.+
T Consensus       178 vi~v~~t~~nS-~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  178 VIFVGRTSQNS-KLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence            4   3444444 5668777775  5654

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.50  E-value=1.1  Score=48.39  Aligned_cols=110  Identities=12%  Similarity=0.103  Sum_probs=72.5

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEECCC--C----eE-EEEecccCCCeEEEEEcCCCCEEEEEeCCC-eE
Q 005473          551 IPASTSKVESCHFSPDGKLLATGGHD-KKAVLWCTES--F----TV-KSTLEEHTQWITDVRFSPSLSRLATSSADR-TV  621 (695)
Q Consensus       551 l~~H~~~V~~v~fspdg~~LaSgs~D-g~V~IWDl~t--~----~~-~~~l~~H~~~V~~v~~spdg~~LaTgs~Dg-tI  621 (695)
                      +..|-..-+.|+||||++.|+.+... +.|.-|++..  +    .. ...+..+.+..-.++...+|.+.+++-.+| .|
T Consensus       158 ~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v  237 (307)
T COG3386         158 LDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRV  237 (307)
T ss_pred             ecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceE
Confidence            33444445789999999988877664 7788777752  1    11 112223345555677777777776554444 89


Q ss_pred             EEEECCCCCeeEEEEecCCCCeEEEEEe-cCCCeEEEEEeCC
Q 005473          622 RVWDTENPDYSLRTFTGHSTTVMSLDFH-PSKEDLLCSCDNN  662 (695)
Q Consensus       622 rvWDl~t~~~~l~~~~gh~~~V~sl~fs-pdg~~llaSgs~D  662 (695)
                      .+|+.+ ++. +..+.-....+++++|- |+.+.|++++...
T Consensus       238 ~~~~pd-G~l-~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         238 VRFNPD-GKL-LGEIKLPVKRPTNPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             EEECCC-CcE-EEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence            999999 554 67777666788899884 5566677776644

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=95.47  E-value=0.39  Score=53.54  Aligned_cols=133  Identities=20%  Similarity=0.215  Sum_probs=81.0

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------------------------------------------eEEEEe
Q 005473          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESF-------------------------------------------TVKSTL  593 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~-------------------------------------------~~~~~l  593 (695)
                      .|+++.|+++..-|++|...|.|.||.....                                           .+...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            4889999999888999999999999844210                                           111222


Q ss_pred             cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE-EEec------CCCCeEEEEEec-----CC--CeEEEEE
Q 005473          594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR-TFTG------HSTTVMSLDFHP-----SK--EDLLCSC  659 (695)
Q Consensus       594 ~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~-~~~g------h~~~V~sl~fsp-----dg--~~llaSg  659 (695)
                      ....+.|++++.+ |-.+++.|..+|++.|.|+|.+..... .+..      ....|+++.|..     |+  ..++++|
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            3346889999997 567999999999999999987664222 1222      234688888862     21  1356688


Q ss_pred             eCCCcEEEEECCC---C----eEEEEEecCCCcEEEEE
Q 005473          660 DNNSEIRYWSINN---G----SCAGVFKNFFESFVSVR  690 (695)
Q Consensus       660 s~Dg~IriWDl~t---g----~~v~~~~~h~~~VtsVa  690 (695)
                      ...|.+.+|.+.-   +    +.+.....+.++|..|.
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~  199 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSII  199 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEE
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEE
Confidence            8899999998751   2    22223335667777665

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=95.44  E-value=0.14  Score=61.35  Aligned_cols=126  Identities=10%  Similarity=0.097  Sum_probs=83.3

Q ss_pred             CCCEEEEE-eCCCcEEEEECCCCeEEEEecccCCC-eEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCCeeEEEEec
Q 005473          566 DGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSP-----SLSRLATSSADRTVRVWDTENPDYSLRTFTG  638 (695)
Q Consensus       566 dg~~LaSg-s~Dg~V~IWDl~t~~~~~~l~~H~~~-V~~v~~sp-----dg~~LaTgs~DgtIrvWDl~t~~~~l~~~~g  638 (695)
                      +.++|+.- .....|+-.|++.|+.+..+..|... |.+++-..     +....+.|-.+..|..||.|-....+..-..
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~  571 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS  571 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence            44444443 45688999999999999999887654 55554321     2345677878899999999975422222112


Q ss_pred             ----CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          639 ----HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       639 ----h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                          .....+|++-..+|  .||.|+.+|.||+||--....-..|.+-..+|+.|.. +.
T Consensus       572 k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDv-t~  628 (794)
T PF08553_consen  572 KQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDV-TA  628 (794)
T ss_pred             cccccCCCceEEEecCCc--eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEe-cC
Confidence                22345666655555  5779999999999994332333445577789999887 54

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.44  E-value=0.048  Score=55.21  Aligned_cols=105  Identities=19%  Similarity=0.179  Sum_probs=72.3

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEE-EcCCCCEEEEEeCCCcEEEEEC
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCH-FSPDGKLLATGGHDKKAVLWCT  584 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~-fspdg~~LaSgs~Dg~V~IWDl  584 (695)
                      ..-+.+|+.++.|.+|..+......+++.                  .-...|.|.. --.++.+.++++.||.|+.|++
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~------------------s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~  131 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVC------------------SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNI  131 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhh------------------cccccceeccccccccceeEEeccCCceeeecc
Confidence            36689999999999997653221111111                  1111222222 2335568889999999999999


Q ss_pred             CCCeEEEEecccC-CCeEEEEEcCCCCEEEEE--eCCCeEEEEECCC
Q 005473          585 ESFTVKSTLEEHT-QWITDVRFSPSLSRLATS--SADRTVRVWDTEN  628 (695)
Q Consensus       585 ~t~~~~~~l~~H~-~~V~~v~~spdg~~LaTg--s~DgtIrvWDl~t  628 (695)
                      ...+.+.....|+ ..+.....+..+++|+++  |.|..++.|++..
T Consensus       132 ~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  132 KPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            9999888888887 666666666667788777  8888888888864

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.38  E-value=2  Score=47.58  Aligned_cols=133  Identities=13%  Similarity=0.088  Sum_probs=90.7

Q ss_pred             EEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEE-E---ecccCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCC
Q 005473          559 ESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKS-T---LEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPD  630 (695)
Q Consensus       559 ~~v~fspdg~~LaSgs-~Dg~V~IWDl~t~~~~~-~---l~~H~~~V~~v~~spdg~~LaTgs~D---gtIrvWDl~t~~  630 (695)
                      ..++++|+|..++.+. .++.|.+.|..+....+ .   ...-...-..+.++|++.++......   +.+.+.|..++.
T Consensus       163 ~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~  242 (381)
T COG3391         163 TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN  242 (381)
T ss_pred             ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce
Confidence            8899999999776665 68999999987665553 1   01112334578899999977665443   589999998865


Q ss_pred             eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCC---cEEEEEE
Q 005473          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFE---SFVSVRV  691 (695)
Q Consensus       631 ~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~---~VtsVaf  691 (695)
                      .....+..-......+.++|+|..+.+.-+..+.|.+.|..+...+..+..+..   .+..+++
T Consensus       243 v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~  306 (381)
T COG3391         243 VTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAI  306 (381)
T ss_pred             EEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccc
Confidence            422212221114677899999997776656678999999998887777664433   3445554

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=95.36  E-value=0.26  Score=54.63  Aligned_cols=108  Identities=13%  Similarity=0.020  Sum_probs=71.9

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC-CCeEE
Q 005473          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMS  645 (695)
Q Consensus       567 g~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~-~~V~s  645 (695)
                      +..++.++.+|.+..+|..+++.+.....  +....+..  .+..|+.++.|+.|..+|..+++. +....... ....+
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~-~W~~~~~~~~~~~s  330 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVE-LWSQSDLLHRLLTA  330 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcE-EEcccccCCCcccC
Confidence            45677777899999999999988765532  11112222  356788888999999999998764 33222111 11222


Q ss_pred             EEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecC
Q 005473          646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF  682 (695)
Q Consensus       646 l~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h  682 (695)
                      ..+. + . .++.++.||.|+++|..+|+.+..++.+
T Consensus       331 p~v~-~-g-~l~v~~~~G~l~~ld~~tG~~~~~~~~~  364 (394)
T PRK11138        331 PVLY-N-G-YLVVGDSEGYLHWINREDGRFVAQQKVD  364 (394)
T ss_pred             CEEE-C-C-EEEEEeCCCEEEEEECCCCCEEEEEEcC
Confidence            3332 2 3 4557888999999999999988877643

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.32  E-value=0.27  Score=57.56  Aligned_cols=126  Identities=11%  Similarity=0.027  Sum_probs=73.9

Q ss_pred             CeEEEEEcCCCCEEEEEe------CCC--cEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCC-C--------
Q 005473          557 KVESCHFSPDGKLLATGG------HDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R--------  619 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs------~Dg--~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~D-g--------  619 (695)
                      .+...+++|||+.++..-      .|+  .|.+++.. +.......+.  ..++-.|+|+|..|++.+.. .        
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccC
Confidence            578899999999877655      244  44444542 2232223332  37889999998887776532 2        


Q ss_pred             ---eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEE---EECCCCe-EE---EEEe-cCCCcEEE
Q 005473          620 ---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY---WSINNGS-CA---GVFK-NFFESFVS  688 (695)
Q Consensus       620 ---tIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~Iri---WDl~tg~-~v---~~~~-~h~~~Vts  688 (695)
                         .+.+.+++.+.. ..   ...+.|.++.|+|||..+++..  +|.|++   -....|+ .+   ..+. .-.+.+.+
T Consensus       428 ~~gql~~~~vd~ge~-~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~  501 (591)
T PRK13616        428 ATGQLARTPVDASAV-AS---RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS  501 (591)
T ss_pred             CCceEEEEeccCchh-hh---ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence               233334433221 11   2345799999999999887665  467776   3333443 11   1122 23334577


Q ss_pred             EEE
Q 005473          689 VRV  691 (695)
Q Consensus       689 Vaf  691 (695)
                      +.|
T Consensus       502 l~W  504 (591)
T PRK13616        502 LDW  504 (591)
T ss_pred             ceE
Confidence            878

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.30  E-value=0.58  Score=54.87  Aligned_cols=129  Identities=19%  Similarity=0.220  Sum_probs=71.4

Q ss_pred             eEEEEEcCCCCEEEEEeCC-CcEEEE-----------ECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEE--
Q 005473          558 VESCHFSPDGKLLATGGHD-KKAVLW-----------CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV--  623 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~D-g~V~IW-----------Dl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrv--  623 (695)
                      .++-.|+|||+.|++.... ..+++.           +++.++...   ...+.|..++|+|||.+|+... ++.|+|  
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~  474 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAV  474 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEE
Confidence            7789999998877776532 223333           343333222   2356799999999999887765 577777  


Q ss_pred             -EECCCCCeeE---EEE-ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec--CCCcEEEEEE
Q 005473          624 -WDTENPDYSL---RTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKN--FFESFVSVRV  691 (695)
Q Consensus       624 -WDl~t~~~~l---~~~-~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~--h~~~VtsVaf  691 (695)
                       -....+...+   ..+ .+....+.+++|..++..++.+.+.+..|+..++. |.....+.+  ...+|.+|+=
T Consensus       475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vD-G~~~~~~~~~n~~~~v~~vaa  548 (591)
T PRK13616        475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLD-GSNSDALPSRNLSAPVVAVAA  548 (591)
T ss_pred             EEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecC-CccccccCCCCccCceEEEec
Confidence             4433333222   112 22334468899999987333322233334444444 322222222  2455665553

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.25  E-value=0.67  Score=51.38  Aligned_cols=116  Identities=14%  Similarity=0.178  Sum_probs=85.4

Q ss_pred             eEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC---CCeEEEEECCCCCeeE
Q 005473          558 VESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSL  633 (695)
Q Consensus       558 V~~v~fspdg~~LaSg-s~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~---DgtIrvWDl~t~~~~l  633 (695)
                      -.+++++++++.++.. ..+..|.+.|..+.+++....- ......++++|++..+..+..   +++|.+.|..+.+...
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~  154 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA  154 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence            4578888888855544 4468999999887776655532 225678999999887766654   6889999998877644


Q ss_pred             EEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEE
Q 005473          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA  676 (695)
Q Consensus       634 ~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v  676 (695)
                      ....+- .. ..+++.|+|..++++-..++.|.+.|.......
T Consensus       155 ~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~  195 (381)
T COG3391         155 TIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV  195 (381)
T ss_pred             EEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence            433332 23 889999999988877778999999997765554

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.24  E-value=0.33  Score=55.33  Aligned_cols=117  Identities=10%  Similarity=0.098  Sum_probs=78.3

Q ss_pred             CCCeEEEEEcCC----CCEEEEEeCCCcEEEEECC-----CCeEEEEeccc---CCCe--EEEEEcCCCCEEEEEeCCCe
Q 005473          555 TSKVESCHFSPD----GKLLATGGHDKKAVLWCTE-----SFTVKSTLEEH---TQWI--TDVRFSPSLSRLATSSADRT  620 (695)
Q Consensus       555 ~~~V~~v~fspd----g~~LaSgs~Dg~V~IWDl~-----t~~~~~~l~~H---~~~V--~~v~~spdg~~LaTgs~Dgt  620 (695)
                      -..|..+.|.|-    .-.|+..-+.+.|.||-+.     ..+.+..-..+   ..+|  -.+.|+|....|+.-.....
T Consensus        56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv  135 (671)
T PF15390_consen   56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV  135 (671)
T ss_pred             cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence            345899999984    3245555678889999764     22322221111   1122  35679998888876655555


Q ss_pred             EEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 005473          621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (695)
Q Consensus       621 IrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~  671 (695)
                      -.+++++.....++.-..-.+.|.|.+|..||..++++-+..=.-+|||-.
T Consensus       136 SV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  136 SVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             eEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            566777665544554445568899999999999999888776678899854

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.24  E-value=0.051  Score=59.44  Aligned_cols=105  Identities=16%  Similarity=0.181  Sum_probs=68.8

Q ss_pred             cCCCCEEEEEe---------CCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 005473          564 SPDGKLLATGG---------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (695)
Q Consensus       564 spdg~~LaSgs---------~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~  634 (695)
                      |||+++++...         ..+.+.|||+++++....... ...+....|+|+|..++... ++.|++++..++....-
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence            56777666532         236789999999776544433 67788999999999998885 67899999877643222


Q ss_pred             EEec-------C---------CCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 005473          635 TFTG-------H---------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSI  670 (695)
Q Consensus       635 ~~~g-------h---------~~~V~sl~fspdg~~llaSgs~Dg~IriWDl  670 (695)
                      +..|       -         -+.-..+-|+||++.|++.--.+..|+.+.+
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~  130 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPL  130 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEe
Confidence            2222       1         1123568899999988888777877777765

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=95.13  E-value=0.91  Score=47.35  Aligned_cols=144  Identities=12%  Similarity=0.197  Sum_probs=80.1

Q ss_pred             EEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEeccc-CCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 005473          549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (695)
Q Consensus       549 ~~l~~H~~~V~~v~fspdg~-~LaSgs~Dg~V~IWDl~t~~~~~~l~~H-~~~V~~v~~spdg~~LaTgs~DgtIrvWDl  626 (695)
                      +.+.+-...|..++|+|+.+ ++++....+.|..++.. ++.++.+.-. .+-...|++.-++.++++.-.++.+.++++
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence            44556566699999999755 66666677888888874 6777766433 356889999877766666656899999998


Q ss_pred             CCCC--eeE---EEEe-----cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC---CeEEEE--Ee------cCCCc
Q 005473          627 ENPD--YSL---RTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---GSCAGV--FK------NFFES  685 (695)
Q Consensus       627 ~t~~--~~l---~~~~-----gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t---g~~v~~--~~------~h~~~  685 (695)
                      ....  ...   ..+.     .+...+-.|+|++.+..++++.- ..-.+||.++.   ...+..  ..      .+...
T Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE-~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  172 (248)
T PF06977_consen   94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE-RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD  172 (248)
T ss_dssp             ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE-SSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred             eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC-CCChhhEEEccccCccceeeccccccccccceecc
Confidence            4322  111   1111     24456899999999887886654 44455555542   222211  11      23445


Q ss_pred             EEEEEEeCCC
Q 005473          686 FVSVRVVQPR  695 (695)
Q Consensus       686 VtsVaf~sPd  695 (695)
                      +.+++| ||.
T Consensus       173 ~S~l~~-~p~  181 (248)
T PF06977_consen  173 LSGLSY-DPR  181 (248)
T ss_dssp             --EEEE-ETT
T ss_pred             ccceEE-cCC
Confidence            677887 773

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.09  E-value=0.89  Score=49.74  Aligned_cols=141  Identities=19%  Similarity=0.206  Sum_probs=81.2

Q ss_pred             CCCCeEEEEEcCCCCEEEE--EeCC---CcEEEEECCCCeEEEEecc-cCCCe---EEEEEc-CCC-CEEEEEeCCCeEE
Q 005473          554 STSKVESCHFSPDGKLLAT--GGHD---KKAVLWCTESFTVKSTLEE-HTQWI---TDVRFS-PSL-SRLATSSADRTVR  622 (695)
Q Consensus       554 H~~~V~~v~fspdg~~LaS--gs~D---g~V~IWDl~t~~~~~~l~~-H~~~V---~~v~~s-pdg-~~LaTgs~DgtIr  622 (695)
                      -...+..+.|.++++.|+.  ...+   ..+.++|..++++...++. ..+.|   ..+.|. +++ .+|.....||.-+
T Consensus       182 ~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~h  261 (353)
T PF00930_consen  182 QDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRH  261 (353)
T ss_dssp             SSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEE
T ss_pred             CccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcE
Confidence            3445889999999983333  3333   3466778877766544432 23333   355554 554 4555566777655


Q ss_pred             EEECCCCCeeEEEEecCCCCeEE-EEEecCCCeEEEEEeCCC----cEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          623 VWDTENPDYSLRTFTGHSTTVMS-LDFHPSKEDLLCSCDNNS----EIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       623 vWDl~t~~~~l~~~~gh~~~V~s-l~fspdg~~llaSgs~Dg----~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ||-++......+.+....-.|.. +.|++++..+++++..++    .|+.-+++.+..+..+.........+.| +|+
T Consensus       262 ly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~-Spd  338 (353)
T PF00930_consen  262 LYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASF-SPD  338 (353)
T ss_dssp             EEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE--TT
T ss_pred             EEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEE-CCC
Confidence            54443323334566655566755 678899888888888643    5666666633455555544333357888 875

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.07  E-value=0.44  Score=48.67  Aligned_cols=135  Identities=10%  Similarity=0.097  Sum_probs=81.4

Q ss_pred             CeEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEE-EEEeCCCeEEEEEC
Q 005473          557 KVESCHFSPDGKLLATGGHD---------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDT  626 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~D---------g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~L-aTgs~DgtIrvWDl  626 (695)
                      ..+.-..+|+|++++-.-.|         |.++.|-..  ..+..+...-+.-..++|+.+.+.+ ++-+.+-+|.-||.
T Consensus       110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy  187 (310)
T KOG4499|consen  110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY  187 (310)
T ss_pred             ccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence            45666778999984433333         233333221  1111222223344568888776554 55677888988884


Q ss_pred             --CCCCe----eEEEEecC---CC-CeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          627 --ENPDY----SLRTFTGH---ST-TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       627 --~t~~~----~l~~~~gh---~~-~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                        .++..    .+..++..   .. .--.+++..+|. |++++-..++|..+|..+|+.+.+++-.+..|+|++|.-|
T Consensus       188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-LYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-EEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence              33321    12222210   00 112234455666 7778888999999999999999999999999999999433

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.97  E-value=0.041  Score=65.91  Aligned_cols=82  Identities=13%  Similarity=0.150  Sum_probs=63.5

Q ss_pred             CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEE
Q 005473          609 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVS  688 (695)
Q Consensus       609 g~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~Vts  688 (695)
                      +..++.|+..|.|-..|+...-.+...-..-.++|++++|+.+|. +++.|-.+|.|.+||+..++.++.+..|..++++
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            457888888899999988753211122222347899999999988 6778999999999999999999999988777776


Q ss_pred             EEE
Q 005473          689 VRV  691 (695)
Q Consensus       689 Vaf  691 (695)
                      |-+
T Consensus       178 vi~  180 (1206)
T KOG2079|consen  178 VIF  180 (1206)
T ss_pred             EEE
Confidence            654

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.74  E-value=0.46  Score=49.80  Aligned_cols=55  Identities=20%  Similarity=0.210  Sum_probs=45.0

Q ss_pred             EEcCCCCEEEEEeCC-----CcEEEEECCCC-eEEEEecccCCCeEEEEEcCCCCEEEEEe
Q 005473          562 HFSPDGKLLATGGHD-----KKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSS  616 (695)
Q Consensus       562 ~fspdg~~LaSgs~D-----g~V~IWDl~t~-~~~~~l~~H~~~V~~v~~spdg~~LaTgs  616 (695)
                      .||+||++|+..-+|     |.|-|||.+.+ ..+..+..|.-.-..+.|.+||+.++.+.
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence            589999999987665     78999999743 35567778887888999999999988774

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=94.67  E-value=0.32  Score=53.92  Aligned_cols=109  Identities=7%  Similarity=0.002  Sum_probs=70.6

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEecccC--CCeE-----EEEEcC--CCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 005473          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT--QWIT-----DVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (695)
Q Consensus       567 g~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~--~~V~-----~v~~sp--dg~~LaTgs~DgtIrvWDl~t~~~~l~~~~  637 (695)
                      +..+++++.++.|.-+|.++++.+.......  ..+.     .+.-.|  ++..++.++.++.|+.+|.++++. +....
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~-~W~~~  147 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEV-AWQTK  147 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCC-ccccc
Confidence            5577778888999999999999887764322  0000     011111  356777888899999999998875 44433


Q ss_pred             cCCCCeEE-EEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473          638 GHSTTVMS-LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  680 (695)
Q Consensus       638 gh~~~V~s-l~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~  680 (695)
                      .. +.+.+ ..+. + . .++.++.++.|+.+|..+|+.+-.+.
T Consensus       148 ~~-~~~~ssP~v~-~-~-~v~v~~~~g~l~ald~~tG~~~W~~~  187 (394)
T PRK11138        148 VA-GEALSRPVVS-D-G-LVLVHTSNGMLQALNESDGAVKWTVN  187 (394)
T ss_pred             CC-CceecCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeec
Confidence            22 22222 2222 3 3 34456778999999999999887665

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.66  E-value=1.2  Score=49.08  Aligned_cols=135  Identities=13%  Similarity=0.166  Sum_probs=74.4

Q ss_pred             CeEEEEEcCCCCEEEEEe-----------CCC-cEEEEECCC--CeE--EEEecccCCCeEEEEEcCCCCEEEEEeCCCe
Q 005473          557 KVESCHFSPDGKLLATGG-----------HDK-KAVLWCTES--FTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRT  620 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs-----------~Dg-~V~IWDl~t--~~~--~~~l~~H~~~V~~v~~spdg~~LaTgs~Dgt  620 (695)
                      ....|+|.++|+++++-.           ..+ .|.+++-.+  ++.  ...+.......+.|++.+++ +++ ++.+..
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i   92 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI   92 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence            367899999999777653           223 676665432  332  23443334456889998887 444 444544


Q ss_pred             EEEEECCCC-----C--eeEEEEec----CCCCeEEEEEecCCCeEEEEEeC------------------CCcEEEEECC
Q 005473          621 VRVWDTENP-----D--YSLRTFTG----HSTTVMSLDFHPSKEDLLCSCDN------------------NSEIRYWSIN  671 (695)
Q Consensus       621 IrvWDl~t~-----~--~~l~~~~g----h~~~V~sl~fspdg~~llaSgs~------------------Dg~IriWDl~  671 (695)
                      +++.|....     +  ..+..+..    +...+..++|.|||..+++.|+.                  .|.|.-+|.+
T Consensus        93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd  172 (367)
T TIGR02604        93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD  172 (367)
T ss_pred             EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence            445565421     1  11222322    12347789999999755544421                  1456666666


Q ss_pred             CCeEEEEEecCCCcEEEEEEeCCC
Q 005473          672 NGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       672 tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +++......++..+ ..++| +|+
T Consensus       173 g~~~e~~a~G~rnp-~Gl~~-d~~  194 (367)
T TIGR02604       173 GGKLRVVAHGFQNP-YGHSV-DSW  194 (367)
T ss_pred             CCeEEEEecCcCCC-ccceE-CCC
Confidence            55443333344433 56777 663

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.65  E-value=0.097  Score=53.10  Aligned_cols=104  Identities=13%  Similarity=0.100  Sum_probs=63.3

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEE-EEecccCCCeEEE-EEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC-CCe
Q 005473          567 GKLLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDV-RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTV  643 (695)
Q Consensus       567 g~~LaSgs~Dg~V~IWDl~t~~~~-~~l~~H~~~V~~v-~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~-~~V  643 (695)
                      +..+++|+.||.|.+|...-.... ..+..-...|.++ .--.++.+..+++.|+.||.|++.-.+. +-....|. ..+
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~-~g~~g~h~~~~~  148 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV-LGYVGQHNFESG  148 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCce-eeeeccccCCCc
Confidence            456889999999999987622111 1111112223222 2222455788999999999999986554 55555565 344


Q ss_pred             EEEEEecCCCeEEEEE--eCCCcEEEEECCC
Q 005473          644 MSLDFHPSKEDLLCSC--DNNSEIRYWSINN  672 (695)
Q Consensus       644 ~sl~fspdg~~llaSg--s~Dg~IriWDl~t  672 (695)
                      ..+.....++ +++..  +.|..++.|++..
T Consensus       149 e~~ivv~sd~-~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  149 EELIVVGSDE-FLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ceeEEecCCc-eEEeeccccchhhhhcchhh
Confidence            4444444444 45555  6778888888764

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.56  E-value=0.31  Score=59.08  Aligned_cols=135  Identities=13%  Similarity=0.084  Sum_probs=85.7

Q ss_pred             CeEEEEEcCCCCEEEE--EeCCCcEEEEECCCCeEEE-----------EecccCCCeEEEEEcCCCC-EEEEEeCCCeEE
Q 005473          557 KVESCHFSPDGKLLAT--GGHDKKAVLWCTESFTVKS-----------TLEEHTQWITDVRFSPSLS-RLATSSADRTVR  622 (695)
Q Consensus       557 ~V~~v~fspdg~~LaS--gs~Dg~V~IWDl~t~~~~~-----------~l~~H~~~V~~v~~spdg~-~LaTgs~DgtIr  622 (695)
                      +|..+...+|+++.++  .+++-.|..||+++.....           +.......+.|+.|.|.-. ..+.+..|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            3455555667665433  3445578899997543211           1222345677899998633 356667899999


Q ss_pred             EEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecC----CCcEEEEEEeCC
Q 005473          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF----FESFVSVRVVQP  694 (695)
Q Consensus       623 vWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h----~~~VtsVaf~sP  694 (695)
                      |.-+......+..+. ....++|++|+|.|+- ++.|...|+|.-|... .+....+.+.    -..|.+|+|+.+
T Consensus       182 V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQ-l~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t  254 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQ-LFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLST  254 (1405)
T ss_pred             hhhhhhhhhhhcccC-cccceeeEEeccccce-eeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecc
Confidence            988765433233322 3456899999999984 5588889999888754 4444444321    357888888543

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.50  E-value=0.23  Score=55.71  Aligned_cols=127  Identities=14%  Similarity=0.142  Sum_probs=82.1

Q ss_pred             cCCCCEEE-EEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCC-------EEEEEeCCCeEEEEECCCCCe-eEE
Q 005473          564 SPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-------RLATSSADRTVRVWDTENPDY-SLR  634 (695)
Q Consensus       564 spdg~~La-Sgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~-------~LaTgs~DgtIrvWDl~t~~~-~l~  634 (695)
                      ..+.++|+ ++..-..++-.|++.|+.+..+.-|.. |.-+.+.|+..       .-+.|-.|..|.-||.|-... .+.
T Consensus       342 ~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~  420 (644)
T KOG2395|consen  342 RADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA  420 (644)
T ss_pred             ccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceee
Confidence            33555444 455556788889999999999988776 77888888643       234566788999999985443 333


Q ss_pred             EEecCCC--CeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473          635 TFTGHST--TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       635 ~~~gh~~--~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf  691 (695)
                      ...+|.-  .-.--||...+.-.||.|+.+|.||+||--....-..|.+...+|+.|..
T Consensus       421 ~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdv  479 (644)
T KOG2395|consen  421 VVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDV  479 (644)
T ss_pred             eeeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEe
Confidence            4444421  11112233344457889999999999996322333445566677766654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=94.25  E-value=0.11  Score=39.78  Aligned_cols=34  Identities=21%  Similarity=0.406  Sum_probs=29.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE
Q 005473          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV  589 (695)
Q Consensus       555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~  589 (695)
                      ...|.+++|+|...+||.|..||.|.||.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            345999999999999999999999999998 4443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=94.19  E-value=1.1  Score=46.68  Aligned_cols=121  Identities=17%  Similarity=0.112  Sum_probs=73.9

Q ss_pred             CCCCEEEEEeCCCcEEEEECC-CCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE--------
Q 005473          565 PDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT--------  635 (695)
Q Consensus       565 pdg~~LaSgs~Dg~V~IWDl~-t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~--------  635 (695)
                      ..++.|+.|+.+| |.++++. ........  +...|..+...++-+.|++-+ |+.++++|+..-......        
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence            3577899999888 9999983 33333333  233499999999877776665 599999998764321100        


Q ss_pred             -----EecCCCCeEEEE--EecCCCeEEEEEeCCCcEEEEECCCC-----eEEEEEecCCCcEEEEEE
Q 005473          636 -----FTGHSTTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINNG-----SCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       636 -----~~gh~~~V~sl~--fspdg~~llaSgs~Dg~IriWDl~tg-----~~v~~~~~h~~~VtsVaf  691 (695)
                           .......|...+  -...+...++.+- ...|.+|.....     +.++.+... +.+.+|+|
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~  146 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAF  146 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcC-CCcEEEEE
Confidence                 111223344443  1233444454443 558888887653     455666544 66788888

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.12  E-value=1.1  Score=50.78  Aligned_cols=103  Identities=14%  Similarity=0.053  Sum_probs=51.4

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEE-ECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 005473          558 VESCHFSPDGKLLATGGHDKKAVLW-CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~Dg~V~IW-Dl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~  636 (695)
                      -...+|...++ +|+-....+|.|+ +++ .+....+.. ...+..|-.   |.+|...+.+ .|.+||..+++. ++.+
T Consensus        71 g~~~vw~~~n~-yAv~~~~~~I~I~kn~~-~~~~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~-i~~i  142 (443)
T PF04053_consen   71 GLSFVWSSRNR-YAVLESSSTIKIYKNFK-NEVVKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKL-IRRI  142 (443)
T ss_dssp             -SEEEE-TSSE-EEEE-TTS-EEEEETTE-E-TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--E-EEEE
T ss_pred             eeEEEEecCcc-EEEEECCCeEEEEEcCc-cccceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcce-eeEE
Confidence            45678887544 6666667888886 332 222123321 122333322   6666666544 799999988664 6666


Q ss_pred             ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (695)
Q Consensus       637 ~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t  672 (695)
                      ...  .|..|.|+++|..+. ..+ +..|.|++.+.
T Consensus       143 ~v~--~vk~V~Ws~~g~~va-l~t-~~~i~il~~~~  174 (443)
T PF04053_consen  143 DVS--AVKYVIWSDDGELVA-LVT-KDSIYILKYNL  174 (443)
T ss_dssp             SS---E-EEEEE-TTSSEEE-EE--S-SEEEEEE-H
T ss_pred             ecC--CCcEEEEECCCCEEE-EEe-CCeEEEEEecc
Confidence            532  388899999887444 444 44677777553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.78  E-value=0.026  Score=66.26  Aligned_cols=129  Identities=11%  Similarity=0.125  Sum_probs=82.6

Q ss_pred             EecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC--CCeEEE-----EecccCCCeEEEEEcC---CCCEEEEEeCC
Q 005473          550 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE--SFTVKS-----TLEEHTQWITDVRFSP---SLSRLATSSAD  618 (695)
Q Consensus       550 ~l~~H~~~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~--t~~~~~-----~l~~H~~~V~~v~~sp---dg~~LaTgs~D  618 (695)
                      .+++..+.|-.++|.. +...++  -.-|.+.|||++  .|+...     ........+.-|.|+|   +..++..+-.+
T Consensus       127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~  204 (1283)
T KOG1916|consen  127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG  204 (1283)
T ss_pred             HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence            3566777888888854 222232  334678899875  233222     2222345556677776   45566667778


Q ss_pred             CeEEEEECCCCCeeEEEEecCCCCeEEEE-----------EecCCCeEEEEEeCCCcEEEEEC-----CCCeEEEEEecC
Q 005473          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLD-----------FHPSKEDLLCSCDNNSEIRYWSI-----NNGSCAGVFKNF  682 (695)
Q Consensus       619 gtIrvWDl~t~~~~l~~~~gh~~~V~sl~-----------fspdg~~llaSgs~Dg~IriWDl-----~tg~~v~~~~~h  682 (695)
                      ++|++....+..  ...+.+|..+++.++           ++|||. +|+....||.+++|-+     +.-.|+...+.|
T Consensus       205 ~~i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi~g~~~~rclhewkph  281 (1283)
T KOG1916|consen  205 GEIRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIYITGKIVHRCLHEWKPH  281 (1283)
T ss_pred             CceeEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeeeeeccccHhhhhccCCC
Confidence            888887776533  244566776665543           589998 6678888999888865     344678888888


Q ss_pred             C
Q 005473          683 F  683 (695)
Q Consensus       683 ~  683 (695)
                      +
T Consensus       282 d  282 (1283)
T KOG1916|consen  282 D  282 (1283)
T ss_pred             C
Confidence            7

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=93.73  E-value=2.6  Score=44.04  Aligned_cols=136  Identities=14%  Similarity=0.090  Sum_probs=81.1

Q ss_pred             CeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE-CCCCCeeEE
Q 005473          557 KVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD-TENPDYSLR  634 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs-~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWD-l~t~~~~l~  634 (695)
                      .+.+.+++++++.++... .++.-.||-...+.....+. ....+..-.|++++...+....+..++++. ...+.....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~  103 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV  103 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence            588999999999776655 23333344333333333321 223788889999977766666666777773 333332122


Q ss_pred             EEecC--CCCeEEEEEecCCCeEEEEE--eCCCcEEEEECC---CC------eEEEEEecCCCcEEEEEEeCC
Q 005473          635 TFTGH--STTVMSLDFHPSKEDLLCSC--DNNSEIRYWSIN---NG------SCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       635 ~~~gh--~~~V~sl~fspdg~~llaSg--s~Dg~IriWDl~---tg------~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      .....  .+.|.++.++|||..+.+..  ..++.|.|--+.   .+      ..+.........|++++| .+
T Consensus       104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W-~~  175 (253)
T PF10647_consen  104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAW-SD  175 (253)
T ss_pred             EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeee-cC
Confidence            22211  12799999999999877665  335667766553   23      122222233568889999 54

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=93.66  E-value=6.5  Score=42.75  Aligned_cols=119  Identities=12%  Similarity=0.097  Sum_probs=70.3

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCeEE--EEeccc----------CCCeEEEEEcCCCCEEEEE---eCCC------
Q 005473          561 CHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEH----------TQWITDVRFSPSLSRLATS---SADR------  619 (695)
Q Consensus       561 v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~--~~l~~H----------~~~V~~v~~spdg~~LaTg---s~Dg------  619 (695)
                      -.+...+..++--+.+|.|+--|+......  ..+.--          .+.---+++++..++|++-   +.++      
T Consensus       189 ~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpg  268 (342)
T PF06433_consen  189 PAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPG  268 (342)
T ss_dssp             -EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-E
T ss_pred             cceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCc
Confidence            344444444444678888888888655432  122100          1222346777755555443   1222      


Q ss_pred             -eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEE-EeCCCcEEEEECCCCeEEEEEec
Q 005473          620 -TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS-CDNNSEIRYWSINNGSCAGVFKN  681 (695)
Q Consensus       620 -tIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaS-gs~Dg~IriWDl~tg~~v~~~~~  681 (695)
                       .|.+||+.+.+. +..+.. ...+.+|..+.+...+|++ ...++.|.|||..+|+.+++++.
T Consensus       269 teVWv~D~~t~kr-v~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  269 TEVWVYDLKTHKR-VARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EEEEEEETTTTEE-EEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             eEEEEEECCCCeE-EEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence             488999998765 655552 2357799999887766655 45689999999999999999984

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=93.65  E-value=3.1  Score=37.88  Aligned_cols=90  Identities=16%  Similarity=0.032  Sum_probs=59.8

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      +-|..||.|..|++|.-.                     ..+..+.. ++.|++++-... ..++.|..+|+|-||+-  
T Consensus        16 ~eLlvGs~D~~IRvf~~~---------------------e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--   70 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKGD---------------------EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--   70 (111)
T ss_pred             ceEEEecCCcEEEEEeCC---------------------cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--
Confidence            678899999999999321                     12222222 345777777665 56888899999999985  


Q ss_pred             CeEEEEecccCCCeEEEEEcC-C--C-CEEEEEeCCCeEE
Q 005473          587 FTVKSTLEEHTQWITDVRFSP-S--L-SRLATSSADRTVR  622 (695)
Q Consensus       587 ~~~~~~l~~H~~~V~~v~~sp-d--g-~~LaTgs~DgtIr  622 (695)
                      ...+..++.. ..++++++.. +  | ..|++|-.+|.|-
T Consensus        71 ~~RlWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   71 SQRLWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             cceeeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            3444455443 3366666544 2  2 3689998888874

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.53  E-value=0.13  Score=60.74  Aligned_cols=119  Identities=20%  Similarity=0.272  Sum_probs=75.1

Q ss_pred             CCeEEEEEcC---CCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEE-----------EcCCCCEEEEEeCCCeE
Q 005473          556 SKVESCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR-----------FSPSLSRLATSSADRTV  621 (695)
Q Consensus       556 ~~V~~v~fsp---dg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~-----------~spdg~~LaTgs~DgtI  621 (695)
                      ..+.-|.|+|   +.-++..+..+++|++.++.+... ..+++|...+++++           ++|||..|++++.||.+
T Consensus       181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v  259 (1283)
T KOG1916|consen  181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSV  259 (1283)
T ss_pred             CCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcc
Confidence            3345555554   566788888889999877654332 34556776655543           58999999999999999


Q ss_pred             EEEECCCCC----eeEEEEecCCCC--eEEEEEecC-------CC--eEEEEEeCCCcEEEEECCCCeEE
Q 005473          622 RVWDTENPD----YSLRTFTGHSTT--VMSLDFHPS-------KE--DLLCSCDNNSEIRYWSINNGSCA  676 (695)
Q Consensus       622 rvWDl~t~~----~~l~~~~gh~~~--V~sl~fspd-------g~--~llaSgs~Dg~IriWDl~tg~~v  676 (695)
                      ++|-+--.+    .|+..+..|.+.  |+.+ |+..       +.  .+|.+...+..+++|....-+|+
T Consensus       260 ~f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  260 GFYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             ceeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            888653111    245566666532  3333 3221       11  23444556778999998777776

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=93.23  E-value=5.6  Score=41.78  Aligned_cols=130  Identities=13%  Similarity=0.053  Sum_probs=79.0

Q ss_pred             eeEEEecCCC-CCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeEEEEecc-cCCCeEEEEEcCCCCEEEEEeCCCeE
Q 005473          546 TEFQLIPAST-SKVESCHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTV  621 (695)
Q Consensus       546 ~~v~~l~~H~-~~V~~v~fspdg~~LaSgs~Dg--~V~IWDl~t~~~~~~l~~-H~~~V~~v~~spdg~~LaTgs~DgtI  621 (695)
                      ..+..+.... ...-.+.|..+|.++-+.+.-|  .|+.+|+.+++......- ....=..|+... +++..-.-.++.+
T Consensus        34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~  112 (264)
T PF05096_consen   34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTG  112 (264)
T ss_dssp             EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEE
T ss_pred             EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeE
Confidence            3444444322 2345788877888888888766  788999999987655432 122223444443 3444555678999


Q ss_pred             EEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec
Q 005473          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKN  681 (695)
Q Consensus       622 rvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~  681 (695)
                      .+||..+-+. +.++.- .+.-+.++  .|+..+++|-+ ...|+++|..+.+.++.+..
T Consensus       113 f~yd~~tl~~-~~~~~y-~~EGWGLt--~dg~~Li~SDG-S~~L~~~dP~~f~~~~~i~V  167 (264)
T PF05096_consen  113 FVYDPNTLKK-IGTFPY-PGEGWGLT--SDGKRLIMSDG-SSRLYFLDPETFKEVRTIQV  167 (264)
T ss_dssp             EEEETTTTEE-EEEEE--SSS--EEE--ECSSCEEEE-S-SSEEEEE-TTT-SEEEEEE-
T ss_pred             EEEccccceE-EEEEec-CCcceEEE--cCCCEEEEECC-ccceEEECCcccceEEEEEE
Confidence            9999998654 666653 35566776  45676775655 56899999888777766653

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=93.07  E-value=3.1  Score=47.70  Aligned_cols=111  Identities=17%  Similarity=0.170  Sum_probs=68.7

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEecccCCC--eEEEEEcC--CCCEEEEEe---------CCCeEEEEECCCCCeeEE
Q 005473          568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--ITDVRFSP--SLSRLATSS---------ADRTVRVWDTENPDYSLR  634 (695)
Q Consensus       568 ~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~--V~~v~~sp--dg~~LaTgs---------~DgtIrvWDl~t~~~~l~  634 (695)
                      ..++.++.|+.|+-+|.++++.+..+......  -..+.-+|  .+.+++.++         .++.|..+|..+++. +.
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~-~W  189 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKL-LW  189 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCce-ee
Confidence            57778888999999999999998877543221  11122222  134555553         368899999998875 44


Q ss_pred             EEecC-C-------------------CCe-EEEEEecCCCeEEEEEeCCC------------------cEEEEECCCCeE
Q 005473          635 TFTGH-S-------------------TTV-MSLDFHPSKEDLLCSCDNNS------------------EIRYWSINNGSC  675 (695)
Q Consensus       635 ~~~gh-~-------------------~~V-~sl~fspdg~~llaSgs~Dg------------------~IriWDl~tg~~  675 (695)
                      .+... .                   ..| .+..+.+.+. +++.++.++                  .|..+|+.+|+.
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~  268 (488)
T cd00216         190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV  268 (488)
T ss_pred             EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence            33221 1                   011 1234444444 344555454                  799999999998


Q ss_pred             EEEEe
Q 005473          676 AGVFK  680 (695)
Q Consensus       676 v~~~~  680 (695)
                      +-.+.
T Consensus       269 ~W~~~  273 (488)
T cd00216         269 KWFYQ  273 (488)
T ss_pred             EEEee
Confidence            87765

The alignment model contains an 8-bladed beta-propeller.

>PHA02713 hypothetical protein; Provisional

Probab=93.06  E-value=0.87  Score=53.17  Aligned_cols=74  Identities=4%  Similarity=0.020  Sum_probs=47.3

Q ss_pred             CCCEEEEEeCC------CeEEEEECCC-CCe-eEEEEecCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCeEEE
Q 005473          608 SLSRLATSSAD------RTVRVWDTEN-PDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAG  677 (695)
Q Consensus       608 dg~~LaTgs~D------gtIrvWDl~t-~~~-~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg--~IriWDl~tg~~v~  677 (695)
                      ++.+.+.|+.+      ..|..||..+ ... .+..+......+..+.+  + ..|++.|+.||  .|..||..+.+...
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~-~~iyv~Gg~~~~~~~e~yd~~~~~W~~  539 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--D-NTIMMLHCYESYMLQDTFNVYTYEWNH  539 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--C-CEEEEEeeecceeehhhcCcccccccc
Confidence            45667777754      2467899987 443 23333333233333333  3 35888999888  89999999988777


Q ss_pred             EEecCCC
Q 005473          678 VFKNFFE  684 (695)
Q Consensus       678 ~~~~h~~  684 (695)
                      ....|+.
T Consensus       540 ~~~~~~~  546 (557)
T PHA02713        540 ICHQHSN  546 (557)
T ss_pred             hhhhcCC
Confidence            6666654

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=93.03  E-value=6.1  Score=42.41  Aligned_cols=120  Identities=11%  Similarity=0.094  Sum_probs=71.8

Q ss_pred             CCEEEEEeC----------CCcEEEEECCCC-----eEEEE-ecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 005473          567 GKLLATGGH----------DKKAVLWCTESF-----TVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (695)
Q Consensus       567 g~~LaSgs~----------Dg~V~IWDl~t~-----~~~~~-l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~  630 (695)
                      ..+|+.|..          .|.|.++++...     +.... -....++|++|+-. .+ +|+.+. ++.|++|++...+
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~  118 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSK  118 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTS
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcc
Confidence            457776653          288999999874     22211 13457899999877 33 454443 5889999998877


Q ss_pred             -eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-CeEEEEEe--cCCCcEEEEEEe
Q 005473          631 -YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFK--NFFESFVSVRVV  692 (695)
Q Consensus       631 -~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t-g~~v~~~~--~h~~~VtsVaf~  692 (695)
                       .....+......|+++....  + +++.|+.-..|.++.++. +..+..+.  ....+|+++.|+
T Consensus       119 ~l~~~~~~~~~~~i~sl~~~~--~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l  181 (321)
T PF03178_consen  119 TLLKKAFYDSPFYITSLSVFK--N-YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFL  181 (321)
T ss_dssp             SEEEEEEE-BSSSEEEEEEET--T-EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE
T ss_pred             cchhhheecceEEEEEEeccc--c-EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEe
Confidence             42333333334677777763  3 666888888888875543 33233322  334567777763

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.85  E-value=1.5  Score=52.63  Aligned_cols=78  Identities=26%  Similarity=0.357  Sum_probs=55.0

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCC----------CeE--E-EEe--------cccCCCeEEEEEcCC---CCEE
Q 005473          557 KVESCHFSPDGKLLATGGHDKKAVLWCTES----------FTV--K-STL--------EEHTQWITDVRFSPS---LSRL  612 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t----------~~~--~-~~l--------~~H~~~V~~v~~spd---g~~L  612 (695)
                      .|..|.++++|++|+..|..| |.|-.+..          ++.  . +++        ..+...|..+.|+|.   +..|
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            588999999999999998766 44444421          111  1 111        134567999999995   5788


Q ss_pred             EEEeCCCeEEEEECCCCCeeEEE
Q 005473          613 ATSSADRTVRVWDTENPDYSLRT  635 (695)
Q Consensus       613 aTgs~DgtIrvWDl~t~~~~l~~  635 (695)
                      +.-..|+++|+||+.....+..+
T Consensus       165 ~vLtsdn~lR~y~~~~~~~p~~v  187 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISDPQHPWQV  187 (717)
T ss_pred             EEEecCCEEEEEecCCCCCCeEE
Confidence            88889999999999866544433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=92.80  E-value=2.2  Score=45.77  Aligned_cols=135  Identities=15%  Similarity=0.238  Sum_probs=68.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 005473          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (695)
Q Consensus       553 ~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~  632 (695)
                      .-.+.+..+..++||++++++.....+.-||--...-...-+.-...|..|.|.|++.+.+.+ ..|.|++=|....   
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~---  217 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDD---  217 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTE---
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCC---
Confidence            444678999999999999998766666678754322222233346789999999997776655 8888988872221   


Q ss_pred             EEEEec-------CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe---cCCCcEEEEEEeCC
Q 005473          633 LRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---NFFESFVSVRVVQP  694 (695)
Q Consensus       633 l~~~~g-------h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~---~h~~~VtsVaf~sP  694 (695)
                      ..++..       -.-.+..++|.+++. ++++|+ .|.+ +...+.|+.=..-+   .-..-+..|.|++|
T Consensus       218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~  286 (302)
T PF14870_consen  218 GETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNP  286 (302)
T ss_dssp             EEEE---B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEET
T ss_pred             ccccccccCCcccCceeeEEEEecCCCC-EEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCC
Confidence            122211       112378999998865 666666 4433 33444444322222   22334566666444

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=92.46  E-value=1.4  Score=49.34  Aligned_cols=94  Identities=15%  Similarity=0.099  Sum_probs=65.8

Q ss_pred             EEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEE--EEecC----------------
Q 005473          590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL--DFHPS----------------  651 (695)
Q Consensus       590 ~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl--~fspd----------------  651 (695)
                      ...+......+.+|+.+|++.+.++...=|.|.++|+.++.. ++.++|..+.=+.-  .....                
T Consensus       300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v-vrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~  378 (415)
T PF14655_consen  300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV-VRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF  378 (415)
T ss_pred             EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh-hhhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence            344555566688999999999988887789999999998653 66666654431111  01111                


Q ss_pred             CCeEEEEEeCCCcEEEEECCCCeEEEEEecCCC
Q 005473          652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFE  684 (695)
Q Consensus       652 g~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~  684 (695)
                      .-.|++-...-|.|.||++++|..+..+....+
T Consensus       379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v~k~  411 (415)
T PF14655_consen  379 ALFLVIYAPRRGILEVWSMRQGPRVAAFNVGKG  411 (415)
T ss_pred             eEEEEEEeccCCeEEEEecCCCCEEEEEEeCCC
Confidence            123556677899999999999999999876543

>PRK10350 hypothetical protein; Provisional

Probab=92.33  E-value=0.84  Score=41.82  Aligned_cols=30  Identities=33%  Similarity=0.313  Sum_probs=15.7

Q ss_pred             ccccccchhhh-hHHHHHHHHHHHHHHHHhh
Q 005473           68 NEKHSESAASY-IESQVIKAREQQQQQQQQH   97 (695)
Q Consensus        68 ~~~~s~~a~~y-iq~q~~qqqqqqqqq~~~~   97 (695)
                      +..++.....| +.+++..+.+.+.+|++|+
T Consensus        21 N~~NNPnqpGY~ipSQQRmQtqMQ~QQ~qQq   51 (145)
T PRK10350         21 NTLNNPNQPGYQIPSQQRMQTQMQTQQIQQK   51 (145)
T ss_pred             hccCCCCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence            44455555677 6665555555544444333

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=92.29  E-value=4.9  Score=47.75  Aligned_cols=112  Identities=15%  Similarity=0.140  Sum_probs=73.8

Q ss_pred             eEEEEEcC--CCCEEEEEeCCCcEEEEECCC-------C-------------eEEEEecccCCCeEEEEEc--CCCCEEE
Q 005473          558 VESCHFSP--DGKLLATGGHDKKAVLWCTES-------F-------------TVKSTLEEHTQWITDVRFS--PSLSRLA  613 (695)
Q Consensus       558 V~~v~fsp--dg~~LaSgs~Dg~V~IWDl~t-------~-------------~~~~~l~~H~~~V~~v~~s--pdg~~La  613 (695)
                      |+-+....  +...|+.|.+||.|.+|.+++       .             ++...+. ....++.++++  ...++||
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA  181 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA  181 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence            55554433  455889999999999997631       0             0112222 24578889998  6778888


Q ss_pred             EEeCCCeEEEEECCC--CCeeEEEEecCCCCeEEEEEecCC--C---eEEEEEeCCCcEEEEEC
Q 005473          614 TSSADRTVRVWDTEN--PDYSLRTFTGHSTTVMSLDFHPSK--E---DLLCSCDNNSEIRYWSI  670 (695)
Q Consensus       614 Tgs~DgtIrvWDl~t--~~~~l~~~~gh~~~V~sl~fspdg--~---~llaSgs~Dg~IriWDl  670 (695)
                      +++....|.||-...  .+.....-..|...|-+|+|-++.  .   ..+++++-.|.+.+|++
T Consensus       182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            888777777775543  221111122355678999997754  2   37778899999999988

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=92.18  E-value=0.39  Score=36.75  Aligned_cols=31  Identities=16%  Similarity=0.354  Sum_probs=28.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 005473          597 TQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (695)
Q Consensus       597 ~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~  627 (695)
                      ...|.+++|+|...+||.|..||.|.||.+.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4569999999999999999999999999984

>PRK10115 protease 2; Provisional

Probab=91.84  E-value=7.2  Score=46.79  Aligned_cols=111  Identities=13%  Similarity=0.087  Sum_probs=67.3

Q ss_pred             eEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC-C-----CeEEEEEC
Q 005473          558 VESCHFSPDGKLLATGGH-----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-D-----RTVRVWDT  626 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~-----Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~-D-----gtIrvWDl  626 (695)
                      +..+.|+|||++|+.+..     ...|+|.|+.++..+........  ..++|.+|+..|+.+.. +     ..|+++++
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l  206 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI  206 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence            677889999998876543     24588889988764322221222  46999998876655433 2     36888899


Q ss_pred             CCCC-eeEEEEecCCCCeE-EEEEecCCCeEEEEEe--CCCcEEEEEC
Q 005473          627 ENPD-YSLRTFTGHSTTVM-SLDFHPSKEDLLCSCD--NNSEIRYWSI  670 (695)
Q Consensus       627 ~t~~-~~l~~~~gh~~~V~-sl~fspdg~~llaSgs--~Dg~IriWDl  670 (695)
                      .++. .-...+.+...... .+..+.++..+++.+.  .++.+.+|+.
T Consensus       207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            8762 11233433333333 2333337776665444  3467999985

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=91.76  E-value=7.9  Score=43.44  Aligned_cols=81  Identities=7%  Similarity=0.043  Sum_probs=49.3

Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecC-C
Q 005473          605 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF-F  683 (695)
Q Consensus       605 ~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h-~  683 (695)
                      ++.+....+....++.+.+.+.....    .+. ..+.+..++++|+++ ++|.-..+|.+.|.+.+-.+++..+... .
T Consensus       186 l~~~~~~~i~~~~g~~i~~i~~~~~~----~i~-~~~~i~~iavSpng~-~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~  259 (410)
T PF04841_consen  186 LSSDRVVEILLANGETIYIIDENSFK----QID-SDGPIIKIAVSPNGK-FIALFTDSGNLWVVSSDFSEKLCEFDTDSK  259 (410)
T ss_pred             eecCcceEEEEecCCEEEEEEccccc----ccc-CCCCeEEEEECCCCC-EEEEEECCCCEEEEECcccceeEEeecCcC
Confidence            33344444444555556644433211    111 235799999999998 5667777899999987766676666643 2


Q ss_pred             CcEEEEEE
Q 005473          684 ESFVSVRV  691 (695)
Q Consensus       684 ~~VtsVaf  691 (695)
                      .....|.|
T Consensus       260 ~~p~~~~W  267 (410)
T PF04841_consen  260 SPPKQMAW  267 (410)
T ss_pred             CCCcEEEE
Confidence            34455555

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=91.52  E-value=16  Score=37.82  Aligned_cols=116  Identities=16%  Similarity=0.187  Sum_probs=71.1

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE--------------ecccCCCeEEEE--EcCCCCEEEEEeCCCeE
Q 005473          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--------------LEEHTQWITDVR--FSPSLSRLATSSADRTV  621 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~--------------l~~H~~~V~~v~--~spdg~~LaTgs~DgtI  621 (695)
                      |..+...++-+.|++-+ |+.|+++++........              .......|..++  -...+...+.....++|
T Consensus        38 I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i  116 (275)
T PF00780_consen   38 ITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKI  116 (275)
T ss_pred             EEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEE
Confidence            88999988877766655 59999999876443331              111223444444  12233444444455688


Q ss_pred             EEEECCCC--C--eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEE
Q 005473          622 RVWDTENP--D--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF  679 (695)
Q Consensus       622 rvWDl~t~--~--~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~  679 (695)
                      .+|.....  .  ..++.+. ....+.+++|..+   .++.|. .....+.|+.++.....+
T Consensus       117 ~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~---~i~v~~-~~~f~~idl~~~~~~~l~  173 (275)
T PF00780_consen  117 LIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGN---KICVGT-SKGFYLIDLNTGSPSELL  173 (275)
T ss_pred             EEEEEECCcccccceeEEEE-cCCCcEEEEEeCC---EEEEEe-CCceEEEecCCCCceEEe
Confidence            88887653  1  2344544 3477899999943   454555 445888999877654444

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C

Probab=91.46  E-value=0.056  Score=57.26  Aligned_cols=7  Identities=43%  Similarity=0.354  Sum_probs=0.0

Q ss_pred             CCccHHH
Q 005473           48 PGGFLFE   54 (695)
Q Consensus        48 ~~~fL~E   54 (695)
                      =+.||.|
T Consensus       275 YD~~L~e  281 (468)
T PF11498_consen  275 YDTFLNE  281 (468)
T ss_dssp             -------
T ss_pred             hHHHHhh
Confidence            3566666

elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.33  E-value=5.1  Score=42.48  Aligned_cols=120  Identities=15%  Similarity=0.200  Sum_probs=82.4

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccc-CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 005473          551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENP  629 (695)
Q Consensus       551 l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H-~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~  629 (695)
                      +.+-+..|.++.|+|+.+.|++..+...-.||=...|..++++.-. -.....|.|.-++.++++-=.++.+.++.++..
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            3454555999999999999999998888888877788888877421 223446777777777777667888888877654


Q ss_pred             Ce---------eEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 005473          630 DY---------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (695)
Q Consensus       630 ~~---------~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~  671 (695)
                      ..         ++............++|.|....++++ -+..=|+||.+.
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~a-KEr~P~~I~~~~  210 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVA-KERNPIGIFEVT  210 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEE-EccCCcEEEEEe
Confidence            32         111222224556789999998877754 444556666654

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=91.09  E-value=2.6  Score=47.26  Aligned_cols=96  Identities=15%  Similarity=0.113  Sum_probs=67.0

Q ss_pred             CCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEE-EEEcCC-C---------
Q 005473          541 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-VRFSPS-L---------  609 (695)
Q Consensus       541 ~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~-v~~spd-g---------  609 (695)
                      .+........+......+.+|..+|++++.|+...=|.|.|+|+.++..++.++|..+.=.. +..... .         
T Consensus       293 ~~~~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~  372 (415)
T PF14655_consen  293 PAAPLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSP  372 (415)
T ss_pred             CCcccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeeccccccccccccc
Confidence            33445566677778888999999999999988877799999999999999888876543221 111111 1         


Q ss_pred             -------C-EEEEEeCCCeEEEEECCCCCeeEEEEe
Q 005473          610 -------S-RLATSSADRTVRVWDTENPDYSLRTFT  637 (695)
Q Consensus       610 -------~-~LaTgs~DgtIrvWDl~t~~~~l~~~~  637 (695)
                             . +++-+-.-|.|-||+++.+.. +..+.
T Consensus       373 ~~~~~~~l~LvIyaprRg~lEvW~~~~g~R-v~a~~  407 (415)
T PF14655_consen  373 KSSSRFALFLVIYAPRRGILEVWSMRQGPR-VAAFN  407 (415)
T ss_pred             CCCCcceEEEEEEeccCCeEEEEecCCCCE-EEEEE
Confidence                   1 234456678899999988664 54444

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=90.42  E-value=2.3  Score=48.73  Aligned_cols=110  Identities=8%  Similarity=0.029  Sum_probs=69.2

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEecccCC------CeE--EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec
Q 005473          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ------WIT--DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG  638 (695)
Q Consensus       567 g~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~------~V~--~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~g  638 (695)
                      +..++.++.|+.|.-.|..+++.+..+.....      .+.  .+.+. ++..++.++.|+.|+.+|.++++. +..+..
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~-~W~~~~  138 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQ-VWKFGN  138 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCE-eeeecC
Confidence            34566777789999999999998877654322      010  01111 226888888999999999999875 444432


Q ss_pred             CCCC-----e-EEEEEecCCCeEEEEEe---------CCCcEEEEECCCCeEEEEEec
Q 005473          639 HSTT-----V-MSLDFHPSKEDLLCSCD---------NNSEIRYWSINNGSCAGVFKN  681 (695)
Q Consensus       639 h~~~-----V-~sl~fspdg~~llaSgs---------~Dg~IriWDl~tg~~v~~~~~  681 (695)
                      ....     + .+..+..  ..++ .++         .+|.|+.+|..+|+.+-.+..
T Consensus       139 ~~~~~~~~~i~ssP~v~~--~~v~-vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~  193 (488)
T cd00216         139 NDQVPPGYTMTGAPTIVK--KLVI-IGSSGAEFFACGVRGALRAYDVETGKLLWRFYT  193 (488)
T ss_pred             CCCcCcceEecCCCEEEC--CEEE-EeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence            2110     1 1222332  2233 332         468899999999998877653

The alignment model contains an 8-bladed beta-propeller.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.21  E-value=6.1  Score=44.13  Aligned_cols=117  Identities=16%  Similarity=0.183  Sum_probs=79.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE----EEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 005473          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  629 (695)
Q Consensus       554 H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~----~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~  629 (695)
                      ..++|.++.||+|.+.||+--.|++|-+++....+..    .+.+..+..|...+|..+ +-+|..... .+-+|-+...
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~-G~e~y~v~pe  142 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQ-GIEFYQVLPE  142 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecC-CeEEEEEchh
Confidence            3558999999999999999999999999987432222    122333456889999866 555555433 4777777665


Q ss_pred             CeeEEEEecCCCCeEEEEEecCCCeEEEEEe-CCCcEEEEECCC
Q 005473          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINN  672 (695)
Q Consensus       630 ~~~l~~~~gh~~~V~sl~fspdg~~llaSgs-~Dg~IriWDl~t  672 (695)
                      +..++....|+-.|.=..|+++-..++.+.+ ...++.-+-+++
T Consensus       143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~  186 (657)
T KOG2377|consen  143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA  186 (657)
T ss_pred             hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence            5556777778888888888888765544444 344444444444

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=90.16  E-value=0.97  Score=33.94  Aligned_cols=31  Identities=35%  Similarity=0.535  Sum_probs=26.5

Q ss_pred             CCeEEEEEcCCC---CEEEEEeCCCcEEEEECCC
Q 005473          556 SKVESCHFSPDG---KLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       556 ~~V~~v~fspdg---~~LaSgs~Dg~V~IWDl~t  586 (695)
                      +.|.+|+|+|+.   .+|+.+-.-+.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468999999854   4888888889999999985

It contains a characteristic DLL sequence motif.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=90.09  E-value=17  Score=40.79  Aligned_cols=32  Identities=9%  Similarity=0.073  Sum_probs=25.2

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 005473          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT  588 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~  588 (695)
                      +.|.++.|+.+.+++ +-..||+|++||+....
T Consensus        81 ~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~G~~  112 (410)
T PF04841_consen   81 GRIVGMGWTDDEELV-VVQSDGTVRVYDLFGEF  112 (410)
T ss_pred             CCEEEEEECCCCeEE-EEEcCCEEEEEeCCCce
Confidence            779999999866655 55679999999986433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=89.81  E-value=1.5  Score=31.77  Aligned_cols=41  Identities=10%  Similarity=0.053  Sum_probs=33.2

Q ss_pred             cCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473          650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       650 pdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf  691 (695)
                      |+++.++++.-.++.|.++|..+++.+..+.....+ ..|+|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P-~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYP-FGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCC-ceEEe
Confidence            577888888888999999999999999988875444 55665

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=89.67  E-value=0.88  Score=34.16  Aligned_cols=32  Identities=19%  Similarity=0.322  Sum_probs=27.3

Q ss_pred             CCeEEEEEecCCC--eEEEEEeCCCcEEEEECCC
Q 005473          641 TTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINN  672 (695)
Q Consensus       641 ~~V~sl~fspdg~--~llaSgs~Dg~IriWDl~t  672 (695)
                      +.|.++.|+|...  .||+-.-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4689999998654  6888888889999999995

It contains a characteristic DLL sequence motif.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=89.50  E-value=7.4  Score=46.81  Aligned_cols=74  Identities=18%  Similarity=0.280  Sum_probs=48.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC----------CCe--eEEEE--------ecCCCCeEEEEEecCC---C
Q 005473          597 TQWITDVRFSPSLSRLATSSADRTVRVWDTEN----------PDY--SLRTF--------TGHSTTVMSLDFHPSK---E  653 (695)
Q Consensus       597 ~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t----------~~~--~l~~~--------~gh~~~V~sl~fspdg---~  653 (695)
                      ...|..|.++|+|.+|+..|..|. .|-.+..          ++.  ..+++        ..+...|..+.|||.+   .
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            356889999999999988887654 3333321          111  11221        1334578999999974   5


Q ss_pred             eEEEEEeCCCcEEEEECCC
Q 005473          654 DLLCSCDNNSEIRYWSINN  672 (695)
Q Consensus       654 ~llaSgs~Dg~IriWDl~t  672 (695)
                      +++ .=..|++||+||+..
T Consensus       163 ~l~-vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  163 HLV-VLTSDNTLRLYDISD  180 (717)
T ss_pred             eEE-EEecCCEEEEEecCC
Confidence            555 445599999999975

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=89.50  E-value=11  Score=45.55  Aligned_cols=109  Identities=15%  Similarity=0.167  Sum_probs=69.1

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEecccCCC--------eEEEEEc----------------CCCCEEEEEeCCCeEE
Q 005473          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--------ITDVRFS----------------PSLSRLATSSADRTVR  622 (695)
Q Consensus       567 g~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~--------V~~v~~s----------------pdg~~LaTgs~DgtIr  622 (695)
                      +..|+.++.++.|.-.|.++++.+..+......        +..+.+.                .++.+|+.++.|+.|.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            456777777888998999999988877533211        1122221                1345888888999999


Q ss_pred             EEECCCCCeeEEEEecCCCCe----------------EE-EEEecCCCeEEEEEe----------CCCcEEEEECCCCeE
Q 005473          623 VWDTENPDYSLRTFTGHSTTV----------------MS-LDFHPSKEDLLCSCD----------NNSEIRYWSINNGSC  675 (695)
Q Consensus       623 vWDl~t~~~~l~~~~gh~~~V----------------~s-l~fspdg~~llaSgs----------~Dg~IriWDl~tg~~  675 (695)
                      -.|.++++.| ..|. ..+.|                ++ -.+. + ..++ .|+          .+|.|+-+|+++|+.
T Consensus       274 ALDA~TGk~~-W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~-~-g~VI-vG~~v~d~~~~~~~~G~I~A~Da~TGkl  348 (764)
T TIGR03074       274 ALDADTGKLC-EDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVA-G-TTVV-IGGRVADNYSTDEPSGVIRAFDVNTGAL  348 (764)
T ss_pred             EEECCCCCEE-EEec-CCCceeeecccCcCCCcccccccCCEEE-C-CEEE-EEecccccccccCCCcEEEEEECCCCcE
Confidence            9999998874 3332 11111                11 1111 2 2234 443          268999999999999


Q ss_pred             EEEEe
Q 005473          676 AGVFK  680 (695)
Q Consensus       676 v~~~~  680 (695)
                      +-.+.
T Consensus       349 ~W~~~  353 (764)
T TIGR03074       349 VWAWD  353 (764)
T ss_pred             eeEEe
Confidence            87775

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.49  E-value=1.6  Score=53.23  Aligned_cols=104  Identities=15%  Similarity=0.021  Sum_probs=70.5

Q ss_pred             CCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 005473          556 SKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (695)
Q Consensus       556 ~~V~~v~fspdg~-~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~  634 (695)
                      ..+.|+.|+|.-. ..+.+..|+.|+|.-+.-......--.-...++||+|+|.|..++.|-..|++.-|...-..  ..
T Consensus       156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~lei--k~  233 (1405)
T KOG3630|consen  156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEI--KS  233 (1405)
T ss_pred             cccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccce--ee
Confidence            3467899998543 35666778999988765333222222245678999999999999999999999988765321  12


Q ss_pred             EEec----CCCCeEEEEEecCCCeEEEEEeC
Q 005473          635 TFTG----HSTTVMSLDFHPSKEDLLCSCDN  661 (695)
Q Consensus       635 ~~~g----h~~~V~sl~fspdg~~llaSgs~  661 (695)
                      .+.+    ....|.||+|--.-.++++.+..
T Consensus       234 ~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~n~  264 (1405)
T KOG3630|consen  234 EIPEPPVEENYRVLSVTWLSTQEFLVVYGNV  264 (1405)
T ss_pred             cccCCCcCCCcceeEEEEecceeEEEEeccc
Confidence            2221    13679999998776666655543

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=89.48  E-value=6.3  Score=44.59  Aligned_cols=118  Identities=14%  Similarity=0.207  Sum_probs=73.4

Q ss_pred             EEEecCCCCCeEEEEEcCCC--------CEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcC----CCCEEEEE
Q 005473          548 FQLIPASTSKVESCHFSPDG--------KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP----SLSRLATS  615 (695)
Q Consensus       548 v~~l~~H~~~V~~v~fspdg--------~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~sp----dg~~LaTg  615 (695)
                      +..+.-|.+ | -|.|.|+.        ..|+--+ |..|.--|-+-.............++.-.|+.    ...++|.+
T Consensus       503 veeW~~~dd-v-vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTesGyIa~a  579 (776)
T COG5167         503 VEEWDLKDD-V-VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTTESGYIAAA  579 (776)
T ss_pred             eeEeecCCc-c-eeecCCchhHHhcCccceEEeec-ccceEEecccccCCceeeeeehhccccccccccccccCceEEEe
Confidence            334444544 3 56777743        2344434 44444445443221112222334444444443    45799999


Q ss_pred             eCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 005473          616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (695)
Q Consensus       616 s~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~  671 (695)
                      |..|-||+||--..+ ....+.+....|..++...+|+++||+|  ...|.+-|++
T Consensus       580 s~kGDirLyDRig~r-AKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~  632 (776)
T COG5167         580 SRKGDIRLYDRIGKR-AKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVP  632 (776)
T ss_pred             cCCCceeeehhhcch-hhhcCcccccceeeeEeecCCcEEEEee--cceEEEEecc
Confidence            999999999975422 2455677778899999999999999888  4688888875

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=89.47  E-value=2.3  Score=43.49  Aligned_cols=73  Identities=15%  Similarity=0.179  Sum_probs=51.9

Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCCeeEEE------Ee-------cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473          606 SPSLSRLATSSADRTVRVWDTENPDYSLRT------FT-------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (695)
Q Consensus       606 spdg~~LaTgs~DgtIrvWDl~t~~~~l~~------~~-------gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t  672 (695)
                      ...+.+|++...+|.+++||+.+.+..+..      +.       .....|.++.+..+|..++ +-+ +|..+.||.+-
T Consensus        19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV-~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIV-TLS-NGDSYSYSPDL   96 (219)
T ss_pred             EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEE-EEe-CCCEEEecccc
Confidence            345778988899999999999986642222      21       3456788999998887554 444 67889999887


Q ss_pred             CeEEEEEe
Q 005473          673 GSCAGVFK  680 (695)
Q Consensus       673 g~~v~~~~  680 (695)
                      +..+....
T Consensus        97 ~~W~~vsd  104 (219)
T PF07569_consen   97 GCWIRVSD  104 (219)
T ss_pred             ceeEEecc
Confidence            76665443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=89.36  E-value=8.6  Score=44.65  Aligned_cols=61  Identities=10%  Similarity=0.090  Sum_probs=37.5

Q ss_pred             CeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecC
Q 005473          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF  682 (695)
Q Consensus       619 gtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h  682 (695)
                      +.|.-||+.+++. +-.+........+. +.-.+. +++.++.||.++++|.++|+.+..++..
T Consensus       441 g~l~AiD~~tGk~-~W~~~~~~p~~~~~-l~t~g~-lvf~g~~~G~l~a~D~~TGe~lw~~~~g  501 (527)
T TIGR03075       441 GSLIAWDPITGKI-VWEHKEDFPLWGGV-LATAGD-LVFYGTLEGYFKAFDAKTGEELWKFKTG  501 (527)
T ss_pred             eeEEEEeCCCCce-eeEecCCCCCCCcc-eEECCc-EEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence            3567777777654 33222111111121 112333 6667888999999999999999888744

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=89.32  E-value=23  Score=43.03  Aligned_cols=104  Identities=8%  Similarity=-0.009  Sum_probs=62.3

Q ss_pred             CCcEEEEECCCCeEEEEeccc---------CCC--------e-EEEEEcCCCCEEEEEe------------------CCC
Q 005473          576 DKKAVLWCTESFTVKSTLEEH---------TQW--------I-TDVRFSPSLSRLATSS------------------ADR  619 (695)
Q Consensus       576 Dg~V~IWDl~t~~~~~~l~~H---------~~~--------V-~~v~~spdg~~LaTgs------------------~Dg  619 (695)
                      +|.|+-+|+++++.+..+..-         .+.        + ..+++.++..+++.+.                  ..+
T Consensus       335 ~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~  414 (764)
T TIGR03074       335 SGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSS  414 (764)
T ss_pred             CcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccc
Confidence            688999999999998776420         011        1 2334555444443321                  234


Q ss_pred             eEEEEECCCCCeeEEEEec--CCC-------CeEEEEEec-CCC--eEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473          620 TVRVWDTENPDYSLRTFTG--HST-------TVMSLDFHP-SKE--DLLCSCDNNSEIRYWSINNGSCAGVFK  680 (695)
Q Consensus       620 tIrvWDl~t~~~~l~~~~g--h~~-------~V~sl~fsp-dg~--~llaSgs~Dg~IriWDl~tg~~v~~~~  680 (695)
                      .|.-.|+++++. +-.+..  |.-       ...-+++.. +|+  .+++.++.+|.++++|.++|+.+..++
T Consensus       415 slvALD~~TGk~-~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       415 SLVALDATTGKE-RWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             eEEEEeCCCCce-EEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence            566677777764 433332  211       111223332 442  377899999999999999999887654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=89.16  E-value=2.1  Score=43.83  Aligned_cols=66  Identities=11%  Similarity=0.070  Sum_probs=50.2

Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-------c-------ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005473          563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------E-------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (695)
Q Consensus       563 fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l-------~-------~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t  628 (695)
                      +...+++|++-+.+|.+++||+.+.+++..-       .       .....|..+.+..+|.-|++-+ +|..+.||.+-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            4457888999999999999999988765332       1       2456788888888887777765 57889998775


Q ss_pred             C
Q 005473          629 P  629 (695)
Q Consensus       629 ~  629 (695)
                      +
T Consensus        97 ~   97 (219)
T PF07569_consen   97 G   97 (219)
T ss_pred             c
Confidence            3

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=89.07  E-value=24  Score=42.96  Aligned_cols=120  Identities=18%  Similarity=0.242  Sum_probs=72.5

Q ss_pred             CCCCCeEEEEEc---C----CCCEEEEEeCCCcEEEEE------CCC---------CeEEEEeccc---CCCeEEEEEcC
Q 005473          553 ASTSKVESCHFS---P----DGKLLATGGHDKKAVLWC------TES---------FTVKSTLEEH---TQWITDVRFSP  607 (695)
Q Consensus       553 ~H~~~V~~v~fs---p----dg~~LaSgs~Dg~V~IWD------l~t---------~~~~~~l~~H---~~~V~~v~~sp  607 (695)
                      .-..+|..|+|.   .    ..++|++=. ...+.|+.      +..         ..++..+..+   ..+..+|+|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            345678888887   2    223555544 45566665      111         1233444322   35678999999


Q ss_pred             -CCCEEEEEeCCCeEEEEECCCC----CeeEEEEecCCCCe----------EEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473          608 -SLSRLATSSADRTVRVWDTENP----DYSLRTFTGHSTTV----------MSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (695)
Q Consensus       608 -dg~~LaTgs~DgtIrvWDl~t~----~~~l~~~~gh~~~V----------~sl~fspdg~~llaSgs~Dg~IriWDl~t  672 (695)
                       +...||+....|...|||+...    ...+.....+.+.+          ..+.|.++...+| .|+ ...+.++|+++
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lL-v~~-r~~l~~~d~~~  233 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLL-VCN-RSKLMLIDFES  233 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEE-EEc-CCceEEEECCC
Confidence             4668999999999999999211    11122222222222          3678988766566 444 56789999987


Q ss_pred             CeE
Q 005473          673 GSC  675 (695)
Q Consensus       673 g~~  675 (695)
                      ...
T Consensus       234 ~~~  236 (765)
T PF10214_consen  234 NWQ  236 (765)
T ss_pred             CCc
Confidence            654

These proteins are found in fungi.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.02  E-value=3.8  Score=46.40  Aligned_cols=79  Identities=24%  Similarity=0.264  Sum_probs=48.6

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEEC---------CCCCeeE--EE-------Eec-CCCCeEEEEEecCC--CeEE
Q 005473          598 QWITDVRFSPSLSRLATSSADRTVRVWDT---------ENPDYSL--RT-------FTG-HSTTVMSLDFHPSK--EDLL  656 (695)
Q Consensus       598 ~~V~~v~~spdg~~LaTgs~DgtIrvWDl---------~t~~~~l--~~-------~~g-h~~~V~sl~fspdg--~~ll  656 (695)
                      ..|..|..++.|..++-.+.+|.+.++=.         +.++..+  ++       |.. ..-.+.-++|||+.  +.-+
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            45778888999999988888886554431         2222111  11       111 11235667899986  3334


Q ss_pred             EEEeCCCcEEEEECCCCeEE
Q 005473          657 CSCDNNSEIRYWSINNGSCA  676 (695)
Q Consensus       657 aSgs~Dg~IriWDl~tg~~v  676 (695)
                      ..-+.|.+||+||+.....+
T Consensus       184 ~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             EEEecCcEEEEEecCCcchh
Confidence            45566999999998754433

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=88.91  E-value=12  Score=41.14  Aligned_cols=98  Identities=8%  Similarity=0.034  Sum_probs=55.1

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----eE--E-EEecc----cCCCeEEEEEcCCCCEEEEEeCC-----
Q 005473          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESF-----TV--K-STLEE----HTQWITDVRFSPSLSRLATSSAD-----  618 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~-----~~--~-~~l~~----H~~~V~~v~~spdg~~LaTgs~D-----  618 (695)
                      .....++|.++|  |++++.+...++.|....     +.  + ..+..    +...+..++|.|||.+.++-+..     
T Consensus        72 ~~p~Gi~~~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~  149 (367)
T TIGR02604        72 SMVTGLAVAVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKV  149 (367)
T ss_pred             CCccceeEecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCcee
Confidence            346789998888  444455544445455321     21  1 12222    23457789999999876655421     


Q ss_pred             --------------CeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEE
Q 005473          619 --------------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS  658 (695)
Q Consensus       619 --------------gtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaS  658 (695)
                                    +.|.-+|.+....  ..+...-.....++|+++|. ++++
T Consensus       150 ~~~~~~~~~~~~~~g~i~r~~pdg~~~--e~~a~G~rnp~Gl~~d~~G~-l~~t  200 (367)
T TIGR02604       150 TRPGTSDESRQGLGGGLFRYNPDGGKL--RVVAHGFQNPYGHSVDSWGD-VFFC  200 (367)
T ss_pred             ccCCCccCcccccCceEEEEecCCCeE--EEEecCcCCCccceECCCCC-EEEE
Confidence                          4455666665332  22222223457899999987 4444

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=88.61  E-value=34  Score=35.68  Aligned_cols=111  Identities=14%  Similarity=0.088  Sum_probs=68.5

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCeEE-EEe--cccCCCeEEEEEcCCCCEEEEEe---CCCeEEEEECCC-
Q 005473          557 KVESCHFSPDGKLLATGGHDKKAVLWC-TESFTVK-STL--EEHTQWITDVRFSPSLSRLATSS---ADRTVRVWDTEN-  628 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~Dg~V~IWD-l~t~~~~-~~l--~~H~~~V~~v~~spdg~~LaTgs---~DgtIrvWDl~t-  628 (695)
                      .+..-.|++++.+.+....+..++++. ..++... ..+  ..-.+.|..++++|||.+++...   .++.|.|=-+.. 
T Consensus        67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~  146 (253)
T PF10647_consen   67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD  146 (253)
T ss_pred             ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence            477889999988777777677777773 3333222 122  11122899999999999876654   356676665421 


Q ss_pred             --C--Ce---eEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEE
Q 005473          629 --P--DY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY  667 (695)
Q Consensus       629 --~--~~---~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~Iri  667 (695)
                        +  ..   ++.........|+.++|.+++..+++....++.+..
T Consensus       147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~  192 (253)
T PF10647_consen  147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR  192 (253)
T ss_pred             CCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence              1  11   122222334678999999998855555555554544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=88.30  E-value=9.5  Score=38.79  Aligned_cols=102  Identities=17%  Similarity=0.304  Sum_probs=63.9

Q ss_pred             CEEEEEeCCCcEEEEECC--CCeEEEEecccCCCeEEEEEcCCCCEEEEEeC---CC---eEEEE---ECC-CCCeeEE-
Q 005473          568 KLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DR---TVRVW---DTE-NPDYSLR-  634 (695)
Q Consensus       568 ~~LaSgs~Dg~V~IWDl~--t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~---Dg---tIrvW---Dl~-t~~~~l~-  634 (695)
                      ..|+.+...++|.+|++.  ....+.++.. -+.|..+.++..|++|+|-=.   ..   .+|+|   +.. ....+++ 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            445454557889999987  3445566654 488999999999999998622   22   56665   222 1111222 


Q ss_pred             EEecC---------------------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473          635 TFTGH---------------------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (695)
Q Consensus       635 ~~~gh---------------------~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t  672 (695)
                      .+.||                     ...+.+++-+|-..++++++  ++++.+|.+..
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~  164 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKY  164 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEE
Confidence            23332                     23467788888655576444  56899998764

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=88.26  E-value=6.6  Score=40.40  Aligned_cols=102  Identities=11%  Similarity=0.015  Sum_probs=65.2

Q ss_pred             EEEEEcCCCCEE-EEEeCCCcEEEEE--CCCCe-----EEEEecc---cC-CCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 005473          559 ESCHFSPDGKLL-ATGGHDKKAVLWC--TESFT-----VKSTLEE---HT-QWITDVRFSPSLSRLATSSADRTVRVWDT  626 (695)
Q Consensus       559 ~~v~fspdg~~L-aSgs~Dg~V~IWD--l~t~~-----~~~~l~~---H~-~~V~~v~~spdg~~LaTgs~DgtIrvWDl  626 (695)
                      +.++|+.+.+.+ ++-+.+.+|.-||  +.++.     .+..++-   .. -.--.++...+|.+.++.-..++|...|.
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp  240 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP  240 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence            468888877755 4456678887787  55543     2222221   00 11112344556777777777889999999


Q ss_pred             CCCCeeEEEEecCCCCeEEEEEec-CCCeEEEEEeC
Q 005473          627 ENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDN  661 (695)
Q Consensus       627 ~t~~~~l~~~~gh~~~V~sl~fsp-dg~~llaSgs~  661 (695)
                      .+++. +.++.-....|+|+||-- +-..+++++..
T Consensus       241 ~tGK~-L~eiklPt~qitsccFgGkn~d~~yvT~aa  275 (310)
T KOG4499|consen  241 TTGKI-LLEIKLPTPQITSCCFGGKNLDILYVTTAA  275 (310)
T ss_pred             CCCcE-EEEEEcCCCceEEEEecCCCccEEEEEehh
Confidence            99886 677776788999999963 22335555543

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=88.20  E-value=45  Score=38.02  Aligned_cols=55  Identities=20%  Similarity=0.181  Sum_probs=37.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE--EEEec-----ccCCCeEEEEEcCCC
Q 005473          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLE-----EHTQWITDVRFSPSL  609 (695)
Q Consensus       555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~--~~~l~-----~H~~~V~~v~~spdg  609 (695)
                      -..-..|+|.|||++|++--..|.|++++-.++..  +..+.     .-.+....|+++|+.
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            34468999999998777765569999998655432  21111     124668899999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=88.04  E-value=12  Score=41.54  Aligned_cols=130  Identities=15%  Similarity=0.074  Sum_probs=67.0

Q ss_pred             EEEcCCCCE-EEEEeCCCc--EEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 005473          561 CHFSPDGKL-LATGGHDKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (695)
Q Consensus       561 v~fspdg~~-LaSgs~Dg~--V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~  637 (695)
                      =+|..||+. |+++..||.  +.+.|+.+++....-.+-........++|+++.++-...+..|+-.|+++.+. ...+.
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~-~~vy~  119 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE-RVVYE  119 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E-EEEEE
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE-EEEEE
Confidence            356778875 555555654  55668888776543333222233566778888887666677899999998765 45555


Q ss_pred             cCCCCeEEEEEe--cCCCeEEEEEe----------------------CCCcEEEEECCCCeEEEEEecCCCcEEEEEEeC
Q 005473          638 GHSTTVMSLDFH--PSKEDLLCSCD----------------------NNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQ  693 (695)
Q Consensus       638 gh~~~V~sl~fs--pdg~~llaSgs----------------------~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~s  693 (695)
                      .....+-...|.  .|+. .++..-                      -...|..-|+.+|+....+. -..++..+-| +
T Consensus       120 ~p~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~f-s  196 (386)
T PF14583_consen  120 VPDDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQF-S  196 (386)
T ss_dssp             --TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEE-E
T ss_pred             CCcccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCccc-C
Confidence            566667656664  3344 332221                      12356666778776554444 3456666777 6


Q ss_pred             C
Q 005473          694 P  694 (695)
Q Consensus       694 P  694 (695)
                      |
T Consensus       197 P  197 (386)
T PF14583_consen  197 P  197 (386)
T ss_dssp             T
T ss_pred             C
Confidence            6

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=87.95  E-value=40  Score=36.28  Aligned_cols=106  Identities=18%  Similarity=0.204  Sum_probs=54.8

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-EEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 005473          559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (695)
Q Consensus       559 ~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~-~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~  637 (695)
                      ..+....++..++ ++..|.|+. ..+.++. .....+-.+.+..+..+++|.++++++....+.-||--....... -.
T Consensus       107 ~~i~~l~~~~~~l-~~~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~-~r  183 (302)
T PF14870_consen  107 FGITALGDGSAEL-AGDRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPH-NR  183 (302)
T ss_dssp             EEEEEEETTEEEE-EETT--EEE-ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEE-E-
T ss_pred             eEEEEcCCCcEEE-EcCCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEE-cc
Confidence            3444433443333 344444332 2233332 223344567899999999999999998777788898764333222 22


Q ss_pred             cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEE
Q 005473          638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS  669 (695)
Q Consensus       638 gh~~~V~sl~fspdg~~llaSgs~Dg~IriWD  669 (695)
                      .-...|.++.|.|++. +++. ...|.|++=|
T Consensus       184 ~~~~riq~~gf~~~~~-lw~~-~~Gg~~~~s~  213 (302)
T PF14870_consen  184 NSSRRIQSMGFSPDGN-LWML-ARGGQIQFSD  213 (302)
T ss_dssp             -SSS-EEEEEE-TTS--EEEE-ETTTEEEEEE
T ss_pred             CccceehhceecCCCC-EEEE-eCCcEEEEcc
Confidence            3457899999999977 4433 3788888877

>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C

Probab=87.82  E-value=0.16  Score=53.94  Aligned_cols=7  Identities=14%  Similarity=0.444  Sum_probs=0.0

Q ss_pred             ccCCCCC
Q 005473          128 STQHLND  134 (695)
Q Consensus       128 ~~~~~~~  134 (695)
                      +.++.||
T Consensus       378 Qq~qmng  384 (468)
T PF11498_consen  378 QQHQMNG  384 (468)
T ss_dssp             -------
T ss_pred             hhhhccc
Confidence            3444564

elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=87.72  E-value=43  Score=39.76  Aligned_cols=124  Identities=16%  Similarity=0.171  Sum_probs=71.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE--Eec-ccC------CCeEEEEEcCCCCEEEEEeC-C---CeE
Q 005473          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLE-EHT------QWITDVRFSPSLSRLATSSA-D---RTV  621 (695)
Q Consensus       555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~--~l~-~H~------~~V~~v~~spdg~~LaTgs~-D---gtI  621 (695)
                      .+.|..|.|..+++.+++.-.+|.|.+||........  .+. .+.      ..|..........++++.+. +   -++
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y  208 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY  208 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence            5679999999999999999999999999993322111  121 111      22222222122345555444 2   247


Q ss_pred             EEEECCCCCeeEEEEe---cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473          622 RVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  680 (695)
Q Consensus       622 rvWDl~t~~~~l~~~~---gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~  680 (695)
                      |++.+......+..+.   -+........|+-....++.-  .+++|.+|++..-+...++.
T Consensus       209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~  268 (670)
T PF10395_consen  209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTIS  268 (670)
T ss_pred             EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEE
Confidence            8888822222233332   222233344444433334433  68899999998877666655

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=87.36  E-value=56  Score=36.85  Aligned_cols=126  Identities=13%  Similarity=0.159  Sum_probs=65.2

Q ss_pred             CCCEEEEEe-CCCcEEEEECCC----CeEEEEecc---cC----CCeEEEEEcCCCCEEEEE--eCC----CeEEEEECC
Q 005473          566 DGKLLATGG-HDKKAVLWCTES----FTVKSTLEE---HT----QWITDVRFSPSLSRLATS--SAD----RTVRVWDTE  627 (695)
Q Consensus       566 dg~~LaSgs-~Dg~V~IWDl~t----~~~~~~l~~---H~----~~V~~v~~spdg~~LaTg--s~D----gtIrvWDl~  627 (695)
                      +.++|+..+ ..+.|+|.|+.+    -+..++++.   +.    ..-..+..-|+|++++|+  ..+    |.+.+.|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            566777766 678999999873    345556653   11    334456666888888885  222    357888887


Q ss_pred             CCCeeEEEEecC---CCCeEEEEEecCCCeEEEEEe--------------------CCCcEEEEECCCCeEEEEEecCCC
Q 005473          628 NPDYSLRTFTGH---STTVMSLDFHPSKEDLLCSCD--------------------NNSEIRYWSINNGSCAGVFKNFFE  684 (695)
Q Consensus       628 t~~~~l~~~~gh---~~~V~sl~fspdg~~llaSgs--------------------~Dg~IriWDl~tg~~v~~~~~h~~  684 (695)
                      +... +......   ......+-|.|..+ +++|..                    ...++++||+.+.+.+.++.-..+
T Consensus       166 tf~v-~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~  243 (461)
T PF05694_consen  166 TFEV-KGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE  243 (461)
T ss_dssp             T--E-EEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred             cccc-cceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence            6553 3444322   23346677788766 444542                    246899999999999999985432


Q ss_pred             --cEEEEEEeC
Q 005473          685 --SFVSVRVVQ  693 (695)
Q Consensus       685 --~VtsVaf~s  693 (695)
                        .+..|+|+|
T Consensus       244 g~~pLEvRflH  254 (461)
T PF05694_consen  244 GQMPLEVRFLH  254 (461)
T ss_dssp             EEEEEEEEE-S
T ss_pred             CCceEEEEecC
Confidence              356777744

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=86.97  E-value=4.7  Score=45.09  Aligned_cols=115  Identities=10%  Similarity=0.136  Sum_probs=62.9

Q ss_pred             eEEEEEcCCCCEEEEEe--------------------CCCcEEEEECCCCeEEEEeccc--CCCeEEEEEcCC--CCEEE
Q 005473          558 VESCHFSPDGKLLATGG--------------------HDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPS--LSRLA  613 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs--------------------~Dg~V~IWDl~t~~~~~~l~~H--~~~V~~v~~spd--g~~La  613 (695)
                      -+.+-|.|..+.++|..                    ...++.+||+.+.+.+.++.--  ...+..|+|..+  ..+-+
T Consensus       183 gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gF  262 (461)
T PF05694_consen  183 GYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGF  262 (461)
T ss_dssp             ---EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEE
T ss_pred             CCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceE
Confidence            35666777667777643                    3467999999999999888432  235678888653  44433


Q ss_pred             EEe-CCCeEEEEEC-CCCCee---EEEEec-----------------CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 005473          614 TSS-ADRTVRVWDT-ENPDYS---LRTFTG-----------------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (695)
Q Consensus       614 Tgs-~DgtIrvWDl-~t~~~~---l~~~~g-----------------h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~  671 (695)
                      +|+ -..+|..|-- +.+...   +..+..                 -..-|+.+.++.|.++|++++-.+|.||-||+.
T Consensus       263 vg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS  342 (461)
T PF05694_consen  263 VGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDIS  342 (461)
T ss_dssp             EEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred             EEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence            332 3444544433 333321   111111                 024579999999999999999999999999997


Q ss_pred             C
Q 005473          672 N  672 (695)
Q Consensus       672 t  672 (695)
                      .
T Consensus       343 D  343 (461)
T PF05694_consen  343 D  343 (461)
T ss_dssp             S
T ss_pred             C
Confidence            5

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=86.94  E-value=7.1  Score=45.33  Aligned_cols=109  Identities=5%  Similarity=-0.057  Sum_probs=67.6

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEecccC-CCeE---E-------EEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE
Q 005473          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWIT---D-------VRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (695)
Q Consensus       567 g~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~-~~V~---~-------v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~  635 (695)
                      +..|+.++.++.|+-.|..+++.+..+.... ..+.   +       +.+  .+..++.++.|+.|...|.++++. +..
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~-~W~  145 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKV-VWS  145 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCE-Eee
Confidence            4467777778889999999999887764321 1111   1       112  235677888899999999999886 333


Q ss_pred             Ee--cCC--CCeEE-EEEecCCCeEEEEEe-----CCCcEEEEECCCCeEEEEEe
Q 005473          636 FT--GHS--TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFK  680 (695)
Q Consensus       636 ~~--gh~--~~V~s-l~fspdg~~llaSgs-----~Dg~IriWDl~tg~~v~~~~  680 (695)
                      +.  .+.  ..+++ ..+. ++. +++..+     .+|.|+.+|.++|+.+-.+.
T Consensus       146 ~~~~~~~~~~~~tssP~v~-~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       146 KKNGDYKAGYTITAAPLVV-KGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             cccccccccccccCCcEEE-CCE-EEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            22  111  11221 1122 333 443322     36899999999999887654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=86.59  E-value=3  Score=40.86  Aligned_cols=31  Identities=23%  Similarity=0.341  Sum_probs=26.7

Q ss_pred             CCeEEEEEecC-----CCeEEEEEeCCCcEEEEECC
Q 005473          641 TTVMSLDFHPS-----KEDLLCSCDNNSEIRYWSIN  671 (695)
Q Consensus       641 ~~V~sl~fspd-----g~~llaSgs~Dg~IriWDl~  671 (695)
                      ..|.+++|+|-     ++.+|++.+.++.|.||.-.
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            47899999984     46799999999999999866

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PRK13684 Ycf48-like protein; Provisional

Probab=86.30  E-value=26  Score=38.13  Aligned_cols=113  Identities=16%  Similarity=0.216  Sum_probs=63.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEE-EECCCCe-EEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 005473          555 TSKVESCHFSPDGKLLATGGHDKKAVL-WCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (695)
Q Consensus       555 ~~~V~~v~fspdg~~LaSgs~Dg~V~I-WDl~t~~-~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~  632 (695)
                      ...+.++.+.+++.+++++. .|.+.. +|- .++ -......-...++++.+.++++.++.+ ..|.+++=+.+.+.. 
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s-  247 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES-  247 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc-
Confidence            45689999999987776655 454432 222 222 222222335678999999998877765 457665333333321 


Q ss_pred             EEEEec----CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe
Q 005473          633 LRTFTG----HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS  674 (695)
Q Consensus       633 l~~~~g----h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~  674 (695)
                      -.....    -...+.++.|.+++. ++++| .+|.|. ...+.|+
T Consensus       248 W~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G-~~G~v~-~S~d~G~  290 (334)
T PRK13684        248 WSKPIIPEITNGYGYLDLAYRTPGE-IWAGG-GNGTLL-VSKDGGK  290 (334)
T ss_pred             cccccCCccccccceeeEEEcCCCC-EEEEc-CCCeEE-EeCCCCC
Confidence            111111    123478899998776 55444 466554 3444443

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=86.18  E-value=6.8  Score=46.10  Aligned_cols=72  Identities=18%  Similarity=0.301  Sum_probs=50.8

Q ss_pred             CCCCCeEEEEE--cCCCCEEEEEeCCCcEEEEECC---------CCeEEEEe--cccC-CCeEEEEEcCCCCEEEEEeCC
Q 005473          553 ASTSKVESCHF--SPDGKLLATGGHDKKAVLWCTE---------SFTVKSTL--EEHT-QWITDVRFSPSLSRLATSSAD  618 (695)
Q Consensus       553 ~H~~~V~~v~f--spdg~~LaSgs~Dg~V~IWDl~---------t~~~~~~l--~~H~-~~V~~v~~spdg~~LaTgs~D  618 (695)
                      ...+.|.++.|  .|++..|++.|..+.|.||.-.         +...++.+  ..|+ .+|.+..|.++|.+++.+  +
T Consensus        70 ~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--G  147 (631)
T PF12234_consen   70 SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--G  147 (631)
T ss_pred             cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--C
Confidence            45677999999  4588899999999999998531         12233333  4454 689999999987666554  3


Q ss_pred             CeEEEEEC
Q 005473          619 RTVRVWDT  626 (695)
Q Consensus       619 gtIrvWDl  626 (695)
                      ..+.|+|-
T Consensus       148 Nqlfv~dk  155 (631)
T PF12234_consen  148 NQLFVFDK  155 (631)
T ss_pred             CEEEEECC
Confidence            56777764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=86.13  E-value=20  Score=41.47  Aligned_cols=69  Identities=19%  Similarity=0.312  Sum_probs=48.2

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECC--CCeEEEEecccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCC
Q 005473          559 ESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTEN  628 (695)
Q Consensus       559 ~~v~fspdg~~LaSgs~Dg~V~IWDl~--t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs-~DgtIrvWDl~t  628 (695)
                      ..|.|+|....|++-.....-.+++++  +......+. ..+.|+|.+|..||.+|+.+- ..=.-++||-..
T Consensus       116 QGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  116 QGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             CcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            368999998887776655544556654  334444454 468899999999999887663 344578998754

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=85.80  E-value=20  Score=38.41  Aligned_cols=114  Identities=14%  Similarity=0.139  Sum_probs=72.0

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECC------CC-eEEEEecc-----cCCCeEEEEEcCCCC------------EEE
Q 005473          558 VESCHFSPDGKLLATGGHDKKAVLWCTE------SF-TVKSTLEE-----HTQWITDVRFSPSLS------------RLA  613 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~------t~-~~~~~l~~-----H~~~V~~v~~spdg~------------~La  613 (695)
                      -..|+|+|.+-+.++...-++..+||..      .. .++.++..     .....+.+.|+....            .++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            3679999999888888888999999986      11 22334332     134567777764322            367


Q ss_pred             EEeCCCeEEEEECCCCCe----eEEEEe-cCCCCe-EEEEEecC--CCeEEEEEeCCCcEEEEECC
Q 005473          614 TSSADRTVRVWDTENPDY----SLRTFT-GHSTTV-MSLDFHPS--KEDLLCSCDNNSEIRYWSIN  671 (695)
Q Consensus       614 Tgs~DgtIrvWDl~t~~~----~l~~~~-gh~~~V-~sl~fspd--g~~llaSgs~Dg~IriWDl~  671 (695)
                      .+++||+|.-|...-...    .+..+. +..+.| ..+++...  +..|+++--..++|.|||-.
T Consensus       105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~  170 (336)
T TIGR03118       105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS  170 (336)
T ss_pred             EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence            778999999998533221    122222 223445 34566543  56666666678999999854

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=85.61  E-value=11  Score=40.06  Aligned_cols=114  Identities=14%  Similarity=0.158  Sum_probs=69.3

Q ss_pred             CCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEe------CCCeEEEEECCCCCeeEEEEec-----CCCCeE
Q 005473          576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS------ADRTVRVWDTENPDYSLRTFTG-----HSTTVM  644 (695)
Q Consensus       576 Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs------~DgtIrvWDl~t~~~~l~~~~g-----h~~~V~  644 (695)
                      ...||+||..+.+-..--.+-.+.|+++.|..+..+++.|.      ....+..||..+...  ..+.+     -.+.|.
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w--~~~~~~~s~~ipgpv~   92 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW--SSLGGGSSNSIPGPVT   92 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee--eecCCcccccCCCcEE
Confidence            45699999987665544445568899999986666777764      345689999987543  33333     246788


Q ss_pred             EEEEec-CCCeEEEEEe-CC--CcEEEEECCCCeEEEE-EecCCCcEEEEEE
Q 005473          645 SLDFHP-SKEDLLCSCD-NN--SEIRYWSINNGSCAGV-FKNFFESFVSVRV  691 (695)
Q Consensus       645 sl~fsp-dg~~llaSgs-~D--g~IriWDl~tg~~v~~-~~~h~~~VtsVaf  691 (695)
                      .+.+.. |+..++++|. .+  ..|..||-.+-..+.. .......|..+.+
T Consensus        93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~  144 (281)
T PF12768_consen   93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV  144 (281)
T ss_pred             EEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence            887743 4444665554 33  3566776543333333 2222345555544

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.74  E-value=60  Score=34.71  Aligned_cols=122  Identities=13%  Similarity=0.247  Sum_probs=80.0

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-------Ee--ccc-CCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 005473          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-------TL--EEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~-------~l--~~H-~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~  627 (695)
                      ...|.|..+|.++++--.+..+.++.+.....+.       .+  ..+ ......++|.|....|+.+-.-.=+.||.+.
T Consensus       131 pE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~  210 (316)
T COG3204         131 PETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT  210 (316)
T ss_pred             hhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence            3567888788888887788888888775442221       11  112 4567789999988888887666656666654


Q ss_pred             CCC--eeEEEEecCC-------CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473          628 NPD--YSLRTFTGHS-------TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  680 (695)
Q Consensus       628 t~~--~~l~~~~gh~-------~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~  680 (695)
                      ...  ..+.....+.       ..|.++.|++....+++-+.+++.|.-.|.. |+.+..+.
T Consensus       211 ~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~ls  271 (316)
T COG3204         211 QSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLS  271 (316)
T ss_pred             cCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEE
Confidence            322  1111111221       3478889998878899999999999888865 44454444

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=84.62  E-value=4.4  Score=47.04  Aligned_cols=75  Identities=19%  Similarity=0.307  Sum_probs=44.5

Q ss_pred             CCCCEEEEEeCCCeEEEEECCC----CCeeE-EEEec--------------------CCCCeEEEEEec---CCCeEEEE
Q 005473          607 PSLSRLATSSADRTVRVWDTEN----PDYSL-RTFTG--------------------HSTTVMSLDFHP---SKEDLLCS  658 (695)
Q Consensus       607 pdg~~LaTgs~DgtIrvWDl~t----~~~~l-~~~~g--------------------h~~~V~sl~fsp---dg~~llaS  658 (695)
                      ++...|+.+..||.+...+...    +.... ..+..                    ..+.+.+++++.   ++..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3566778888888888777654    11111 11110                    113355666665   24457779


Q ss_pred             EeCCCcEEEEECCCCeEEEEEec
Q 005473          659 CDNNSEIRYWSINNGSCAGVFKN  681 (695)
Q Consensus       659 gs~Dg~IriWDl~tg~~v~~~~~  681 (695)
                      -+.|+.||+||+.+++|+.++..
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~~  258 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATIDL  258 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEET
T ss_pred             EeCCCeEEEEECCCCeEEEEecc
Confidence            99999999999999999877643

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.20  E-value=19  Score=38.24  Aligned_cols=101  Identities=15%  Similarity=0.172  Sum_probs=66.0

Q ss_pred             EEEEcCCCC-EEEEEeCCCc-EEEEECCCCeEEEEecccC--CCeEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCC
Q 005473          560 SCHFSPDGK-LLATGGHDKK-AVLWCTESFTVKSTLEEHT--QWITDVRFSPSLSRLATSS-----ADRTVRVWDTENPD  630 (695)
Q Consensus       560 ~v~fspdg~-~LaSgs~Dg~-V~IWDl~t~~~~~~l~~H~--~~V~~v~~spdg~~LaTgs-----~DgtIrvWDl~t~~  630 (695)
                      .++|+|.-. -++.+-.-|+ ..|+|..+.....++...+  ...-.=.|+|||.+|...=     .-|.|-|||.+.+-
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f  151 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF  151 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence            466777433 4555555444 4578887766554443221  1122346899999986542     23679999999766


Q ss_pred             eeEEEEecCCCCeEEEEEecCCCeEEEEEe
Q 005473          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (695)
Q Consensus       631 ~~l~~~~gh~~~V~sl~fspdg~~llaSgs  660 (695)
                      ..+..+..|.-.--.|.|.+||+.+++..+
T Consensus       152 qrvgE~~t~GiGpHev~lm~DGrtlvvanG  181 (366)
T COG3490         152 QRVGEFSTHGIGPHEVTLMADGRTLVVANG  181 (366)
T ss_pred             ceecccccCCcCcceeEEecCCcEEEEeCC
Confidence            567778888777788999999996665543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=84.19  E-value=19  Score=39.29  Aligned_cols=113  Identities=15%  Similarity=0.181  Sum_probs=68.2

Q ss_pred             EEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccc---CC----CeEEEEEcCCCCEEEEEeC--CC
Q 005473          559 ESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH---TQ----WITDVRFSPSLSRLATSSA--DR  619 (695)
Q Consensus       559 ~~v~fspdg~~LaSgs----------~Dg~V~IWDl~t~~~~~~l~~H---~~----~V~~v~~spdg~~LaTgs~--Dg  619 (695)
                      -.+..+||++.+++++          ..-.|.+||..+..+...+.-.   ..    ....+.++.|+++++....  --
T Consensus        39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~  118 (342)
T PF06433_consen   39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT  118 (342)
T ss_dssp             EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred             CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence            4467899999888754          2346899999999887755322   11    2234677888888777643  45


Q ss_pred             eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC-CCeEE
Q 005473          620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCA  676 (695)
Q Consensus       620 tIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~-tg~~v  676 (695)
                      .|.|-|+...+. +.++.- . .|..  ..|.++.=|.+-+.||.+-...+. .|+..
T Consensus       119 SVtVVDl~~~kv-v~ei~~-P-GC~~--iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~  171 (342)
T PF06433_consen  119 SVTVVDLAAKKV-VGEIDT-P-GCWL--IYPSGNRGFSMLCGDGSLLTVTLDADGKEA  171 (342)
T ss_dssp             EEEEEETTTTEE-EEEEEG-T-SEEE--EEEEETTEEEEEETTSCEEEEEETSTSSEE
T ss_pred             eEEEEECCCCce-eeeecC-C-CEEE--EEecCCCceEEEecCCceEEEEECCCCCEe
Confidence            688888887664 555442 1 1222  234332234455568888888877 45544

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PHA03098 kelch-like protein; Provisional

Probab=83.51  E-value=21  Score=41.12  Aligned_cols=105  Identities=7%  Similarity=0.035  Sum_probs=53.8

Q ss_pred             CCCEEEEEeCC------CcEEEEECCCCeEEEEe--cccCCCeEEEEEcCCCCEEEEEeCC--------CeEEEEECCCC
Q 005473          566 DGKLLATGGHD------KKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSAD--------RTVRVWDTENP  629 (695)
Q Consensus       566 dg~~LaSgs~D------g~V~IWDl~t~~~~~~l--~~H~~~V~~v~~spdg~~LaTgs~D--------gtIrvWDl~t~  629 (695)
                      ++++++.||.+      ..|.+||..+.+-...-  ....... ++.. .++.+++.|+.+        ..+.+||..+.
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  466 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTN  466 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEE-ECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence            56666667632      35788898765432211  1111111 2222 245666777643        23889998876


Q ss_pred             CeeE-EEEecCCCCeEEEEEecCCCeEEEEEeCC-----CcEEEEECCCCeE
Q 005473          630 DYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSC  675 (695)
Q Consensus       630 ~~~l-~~~~gh~~~V~sl~fspdg~~llaSgs~D-----g~IriWDl~tg~~  675 (695)
                      +... ..+.........+.+  ++ .+++.|+.+     ..|.+||..+.+.
T Consensus       467 ~W~~~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W  515 (534)
T PHA03098        467 KWTELSSLNFPRINASLCIF--NN-KIYVVGGDKYEYYINEIEVYDDKTNTW  515 (534)
T ss_pred             ceeeCCCCCcccccceEEEE--CC-EEEEEcCCcCCcccceeEEEeCCCCEE
Confidence            5421 111111111122222  44 466677654     4789999987754

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=83.41  E-value=21  Score=38.78  Aligned_cols=100  Identities=17%  Similarity=0.222  Sum_probs=54.5

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE---EEEe----cccCCCeEEEEEcCC---CCEEE-EEeCC--------
Q 005473          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTL----EEHTQWITDVRFSPS---LSRLA-TSSAD--------  618 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~---~~~l----~~H~~~V~~v~~spd---g~~La-Tgs~D--------  618 (695)
                      -+.|+|.|||++|++ ...|.|++++ ..+..   +..+    .........++++|+   ..+|. +.+..        
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            578999999987665 5599999999 33433   2222    123456789999994   23443 33311        


Q ss_pred             CeEEEEECCCC-------CeeEEEEec---CCCCeEEEEEecCCCeEEEEEe
Q 005473          619 RTVRVWDTENP-------DYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCD  660 (695)
Q Consensus       619 gtIrvWDl~t~-------~~~l~~~~g---h~~~V~sl~fspdg~~llaSgs  660 (695)
                      ..|.-|.+...       +..+..+..   .......|.|.|||. |+++.+
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G  132 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVG  132 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeC
Confidence            13444444332       111222222   223457799999996 554544

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=83.29  E-value=59  Score=36.13  Aligned_cols=154  Identities=14%  Similarity=0.212  Sum_probs=80.7

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCC-CeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS-KVESCHFSPDGKLLATGGHDKKAVLWCT  584 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~-~V~~v~fspdg~~LaSgs~Dg~V~IWDl  584 (695)
                      +++|..+..|+.-.+|...-.              +    ..+..|..+.+ ......++++.+.|+-...+..|+-.|+
T Consensus        48 ~kllF~s~~dg~~nly~lDL~--------------t----~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL  109 (386)
T PF14583_consen   48 RKLLFASDFDGNRNLYLLDLA--------------T----GEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDL  109 (386)
T ss_dssp             -EEEEEE-TTSS-EEEEEETT--------------T-----EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEET
T ss_pred             CEEEEEeccCCCcceEEEEcc--------------c----CEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEEC
Confidence            367777777777777744211              1    12333333221 1224566788888776666778998999


Q ss_pred             CCCeEEEEecccCCCeEEEEEc--CCCCEEEEEe---C-------------------CCeEEEEECCCCCeeEEEEecCC
Q 005473          585 ESFTVKSTLEEHTQWITDVRFS--PSLSRLATSS---A-------------------DRTVRVWDTENPDYSLRTFTGHS  640 (695)
Q Consensus       585 ~t~~~~~~l~~H~~~V~~v~~s--pdg~~LaTgs---~-------------------DgtIrvWDl~t~~~~l~~~~gh~  640 (695)
                      ++.+....++.....+-...|.  .++..++-.-   .                   .+.|..-|++++..  +++..-.
T Consensus       110 ~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~--~~v~~~~  187 (386)
T PF14583_consen  110 DTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER--KVVFEDT  187 (386)
T ss_dssp             TT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E--EEEEEES
T ss_pred             CcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce--eEEEecC
Confidence            9988776776666666556664  3455543221   0                   22455557776553  4444456


Q ss_pred             CCeEEEEEecCCCeEEEEEeC---CCc-EEEEECCC-CeEEEEE
Q 005473          641 TTVMSLDFHPSKEDLLCSCDN---NSE-IRYWSINN-GSCAGVF  679 (695)
Q Consensus       641 ~~V~sl~fspdg~~llaSgs~---Dg~-IriWDl~t-g~~v~~~  679 (695)
                      .++..+-|+|..+.+|+.|-+   |.. -|||-+++ |.-+..+
T Consensus       188 ~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v  231 (386)
T PF14583_consen  188 DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKV  231 (386)
T ss_dssp             S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EES
T ss_pred             ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceee
Confidence            788999999998888887753   322 37776653 3333333

>PHA03098 kelch-like protein; Provisional

Probab=83.14  E-value=19  Score=41.65  Aligned_cols=105  Identities=9%  Similarity=0.033  Sum_probs=52.5

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCeEEEE--ecccCCCeEEEEEcCCCCEEEEEeCC------CeEEEEECCCCCee
Q 005473          566 DGKLLATGGHD-----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENPDYS  632 (695)
Q Consensus       566 dg~~LaSgs~D-----g~V~IWDl~t~~~~~~--l~~H~~~V~~v~~spdg~~LaTgs~D------gtIrvWDl~t~~~~  632 (695)
                      ++++++.||.+     ..|.+||..+.+-...  +...... .+++. -++.+++.||.+      ..+.+||+.+....
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~  419 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWS  419 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence            57777777765     3477788776543221  1111111 11222 245667777632      45889998875432


Q ss_pred             E-EEEecCCCCeEEEEEecCCCeEEEEEeCC--------CcEEEEECCCCeE
Q 005473          633 L-RTFTGHSTTVMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSC  675 (695)
Q Consensus       633 l-~~~~gh~~~V~sl~fspdg~~llaSgs~D--------g~IriWDl~tg~~  675 (695)
                      . ..+...... .+++.. ++ .+++.|+.+        ..+.+||..+++.
T Consensus       420 ~~~~~p~~r~~-~~~~~~-~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W  468 (534)
T PHA03098        420 KGSPLPISHYG-GCAIYH-DG-KIYVIGGISYIDNIKVYNIVESYNPVTNKW  468 (534)
T ss_pred             ecCCCCccccC-ceEEEE-CC-EEEEECCccCCCCCcccceEEEecCCCCce
Confidence            1 111111111 122222 33 466666643        2388899877654

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=82.67  E-value=0.18  Score=56.13  Aligned_cols=132  Identities=14%  Similarity=0.113  Sum_probs=90.6

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCeeEEEE
Q 005473          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTF  636 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~L-aTgs~DgtIrvWDl~t~~~~l~~~  636 (695)
                      -....|-+++.-++.++.+..|..||-. ++....+. .++...+++|.-++..+ +.+-..+.+.+||+.+....--.+
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~  114 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES  114 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence            3456677877778889989999999954 34333333 34566788898877665 445567899999998643211112


Q ss_pred             ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       637 ~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      .+. ..-.-+.|++..+ .++.|...|.|+|++..+.+.+.+...|...+++++| .+
T Consensus       115 gg~-~s~sll~wsKg~~-el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av-~l  169 (615)
T KOG2247|consen  115 GGT-SSKSLLAWSKGTP-ELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAV-TL  169 (615)
T ss_pred             cCc-chHHHHhhccCCc-cccccccccceEEEeccchhhhhhhcccccceeEEEe-cc
Confidence            211 1112267888776 4447778999999999887777777668889999988 65

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=82.66  E-value=53  Score=36.78  Aligned_cols=129  Identities=11%  Similarity=0.113  Sum_probs=69.5

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-e---eE
Q 005473          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-Y---SL  633 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~-~---~l  633 (695)
                      ...+..++|+.+++.+.....++-||--...-...-......+..+.|.+++.+++++ .+|.+.+ ....+. .   ..
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f  318 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDF  318 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccce
Confidence            5566778888887776644433445532111111222335668899999998888776 4555443 333332 1   11


Q ss_pred             EEEec--CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEE---ecCCCcEEEEEE
Q 005473          634 RTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KNFFESFVSVRV  691 (695)
Q Consensus       634 ~~~~g--h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~---~~h~~~VtsVaf  691 (695)
                      .....  -...+.++.|.+++. ++++ +.+|.|.... ..|+.=...   ..-...+..|.|
T Consensus       319 ~~~~~~~~~~~l~~v~~~~d~~-~~a~-G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f  378 (398)
T PLN00033        319 EEADIKSRGFGILDVGYRSKKE-AWAA-GGSGILLRST-DGGKSWKRDKGADNIAANLYSVKF  378 (398)
T ss_pred             eecccCCCCcceEEEEEcCCCc-EEEE-ECCCcEEEeC-CCCcceeEccccCCCCcceeEEEE
Confidence            21111  113488999998866 5544 4577776654 334332221   222345667776

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=82.62  E-value=1.3e+02  Score=36.83  Aligned_cols=125  Identities=10%  Similarity=0.101  Sum_probs=74.3

Q ss_pred             eeEEEecC---CCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC----e-EEEEecccCC----------CeEEEEEc
Q 005473          546 TEFQLIPA---STSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF----T-VKSTLEEHTQ----------WITDVRFS  606 (695)
Q Consensus       546 ~~v~~l~~---H~~~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~t~----~-~~~~l~~H~~----------~V~~v~~s  606 (695)
                      .++..+..   ...+...|+|+| +.+.||.....|...|||+...    . .+.....+.+          .-..|.|.
T Consensus       133 ~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~  212 (765)
T PF10214_consen  133 NPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWV  212 (765)
T ss_pred             ceeEEechhhcCCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEec
Confidence            44444442   234578899998 4558999999999999999211    1 1111111222          23478898


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCCeeE-EEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473          607 PSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (695)
Q Consensus       607 pdg~~LaTgs~DgtIrvWDl~t~~~~l-~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t  672 (695)
                      ++...|+.++ -..+.++|+++..... -.......+|..+.-+|+....++.-. ...|...|+..
T Consensus       213 ~~~~~lLv~~-r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~  277 (765)
T PF10214_consen  213 SDSNRLLVCN-RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS  277 (765)
T ss_pred             CCCCEEEEEc-CCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence            8877777765 4568999998765411 112223456777777776332222222 24666667665

These proteins are found in fungi.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=81.90  E-value=23  Score=41.58  Aligned_cols=111  Identities=11%  Similarity=0.082  Sum_probs=59.3

Q ss_pred             EEEEEcCCCCEEEEEeCC------CcEEEEECCCCeEEE--EecccCCCeEEEEEcCCCCEEEEEeCCCe-----EEEEE
Q 005473          559 ESCHFSPDGKLLATGGHD------KKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSADRT-----VRVWD  625 (695)
Q Consensus       559 ~~v~fspdg~~LaSgs~D------g~V~IWDl~t~~~~~--~l~~H~~~V~~v~~spdg~~LaTgs~Dgt-----IrvWD  625 (695)
                      .++++. ++.+.++||.|      .+|..||.++.+-..  .+...........+  +|.+.|+|+.||.     |-.||
T Consensus       326 ~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YD  402 (571)
T KOG4441|consen  326 VGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYD  402 (571)
T ss_pred             ccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEec
Confidence            334443 55778888888      357778877655322  11111111111111  4677899998874     78888


Q ss_pred             CCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC------CcEEEEECCCCe
Q 005473          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGS  674 (695)
Q Consensus       626 l~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D------g~IriWDl~tg~  674 (695)
                      ..+.+.....  .+...........-+..+++.||.|      .+|..||..+++
T Consensus       403 p~~~~W~~va--~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~  455 (571)
T KOG4441|consen  403 PVTNKWTPVA--PMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT  455 (571)
T ss_pred             CCCCcccccC--CCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc
Confidence            8875542111  1111222222222224477777744      356788877654

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=81.88  E-value=47  Score=31.38  Aligned_cols=112  Identities=15%  Similarity=0.075  Sum_probs=67.8

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCC--------eEEEEecccCCCeEEEEEcC-----CCCEEEEEeCCCeEEEEEC
Q 005473          560 SCHFSPDGKLLATGGHDKKAVLWCTESF--------TVKSTLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDT  626 (695)
Q Consensus       560 ~v~fspdg~~LaSgs~Dg~V~IWDl~t~--------~~~~~l~~H~~~V~~v~~sp-----dg~~LaTgs~DgtIrvWDl  626 (695)
                      .-.|......|++++.-++|.|++....        ..+..+. -...|++++-.+     +...|+.|+ ...|..||+
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV   80 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV   80 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence            3455555557888888999999986532        2333343 245677775433     244667765 567999999


Q ss_pred             CCCCeeEEEEecCCCCeEEEEEec---CCCeEEEEEeCCCcEEEEECCCCeEE
Q 005473          627 ENPDYSLRTFTGHSTTVMSLDFHP---SKEDLLCSCDNNSEIRYWSINNGSCA  676 (695)
Q Consensus       627 ~t~~~~l~~~~gh~~~V~sl~fsp---dg~~llaSgs~Dg~IriWDl~tg~~v  676 (695)
                      .....  ..++.-.+.|.++.+-.   ....+++.|+ +..|.-||..-.+..
T Consensus        81 ~~N~d--~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~f  130 (136)
T PF14781_consen   81 ENNSD--LFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIF  130 (136)
T ss_pred             ccCch--hhhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEE
Confidence            87543  22333346677777632   1223555555 678888886644433

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.46  E-value=12  Score=42.65  Aligned_cols=74  Identities=19%  Similarity=0.244  Sum_probs=50.6

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEE---------CCCCeEEEEec-----------ccCCCeEEEEEcCCC---CEEE
Q 005473          557 KVESCHFSPDGKLLATGGHDKKAVLWC---------TESFTVKSTLE-----------EHTQWITDVRFSPSL---SRLA  613 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~Dg~V~IWD---------l~t~~~~~~l~-----------~H~~~V~~v~~spdg---~~La  613 (695)
                      .|.-|..++.|..++-+|-||.+.++=         ++.++.+.+.+           ...-.+..++|+|+.   ..|+
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            477888999999999999999665542         12333221111           011235678999964   6777


Q ss_pred             EEeCCCeEEEEECCCCC
Q 005473          614 TSSADRTVRVWDTENPD  630 (695)
Q Consensus       614 Tgs~DgtIrvWDl~t~~  630 (695)
                      .-+.|.+|||||+....
T Consensus       185 iL~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPT  201 (741)
T ss_pred             EEecCcEEEEEecCCcc
Confidence            77889999999997654

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=80.78  E-value=69  Score=39.36  Aligned_cols=170  Identities=15%  Similarity=0.032  Sum_probs=89.5

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE--
Q 005473          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW--  582 (695)
Q Consensus       505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IW--  582 (695)
                      .+++++.|.|+..+.+.....+...    . +         ........-...|.-..|--|..+|.++..||.+.-|  
T Consensus       547 ~s~~~aVG~Ws~~~~~l~~~pd~~~----~-~---------~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~  612 (1096)
T KOG1897|consen  547 KSRLLAVGLWSDISMILTFLPDLIL----I-T---------HEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVL  612 (1096)
T ss_pred             cceEEEEEeecceEEEEEECCCcce----e-e---------eeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEE
Confidence            3469999999988887754333110    0 0         0000001112336666676678899999999998865  


Q ss_pred             ECCCCeEEEEec--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEE-Ee-cCCCeEEEE
Q 005473          583 CTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD-FH-PSKEDLLCS  658 (695)
Q Consensus       583 Dl~t~~~~~~l~--~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~-fs-pdg~~llaS  658 (695)
                      |..++..-..-+  --+.++.--.|+..++.-+.++.|+-.-+|.-+. +.++..+..  ..|..+| |+ +..+.-+++
T Consensus       613 d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~-kLv~spls~--kev~~~c~f~s~a~~d~l~~  689 (1096)
T KOG1897|consen  613 DINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNG-KLVYSPLSL--KEVNHMCPFNSDAYPDSLAS  689 (1096)
T ss_pred             EcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCC-cEEEeccch--HHhhhhcccccccCCceEEE
Confidence            555554332221  1245666667776555555555677666776553 433332221  1122221 22 223334545


Q ss_pred             EeCCCcEEEEECCCCe--EEEEEecCCCcEEEEEEeCC
Q 005473          659 CDNNSEIRYWSINNGS--CAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       659 gs~Dg~IriWDl~tg~--~v~~~~~h~~~VtsVaf~sP  694 (695)
                      +. .+.+++.-++.-.  -++++.-| .....|+| ++
T Consensus       690 ~~-~~~l~i~tid~iqkl~irtvpl~-~~prrI~~-q~  724 (1096)
T KOG1897|consen  690 AN-GGALTIGTIDEIQKLHIRTVPLG-ESPRRICY-QE  724 (1096)
T ss_pred             ec-CCceEEEEecchhhcceeeecCC-CChhheEe-cc
Confidence            55 5678888776532  23444333 33356666 54

>PHA02713 hypothetical protein; Provisional

Probab=80.59  E-value=28  Score=40.68  Aligned_cols=102  Identities=17%  Similarity=0.154  Sum_probs=52.7

Q ss_pred             CCCEEEEEeCCC-----cEEEEECCCCeEEE--EecccCCCeEEEEEcCCCCEEEEEeCCC-------------------
Q 005473          566 DGKLLATGGHDK-----KAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSADR-------------------  619 (695)
Q Consensus       566 dg~~LaSgs~Dg-----~V~IWDl~t~~~~~--~l~~H~~~V~~v~~spdg~~LaTgs~Dg-------------------  619 (695)
                      +|++.+.||.++     .|..||..+.+-..  .+.........+.+  ++.+.+.|+.++                   
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccc
Confidence            677777888764     47789987654321  11111111112222  567777777652                   


Q ss_pred             ----eEEEEECCCCCee-EEEEecCCCCeEEEEEecCCCeEEEEEeCC------CcEEEEECCC
Q 005473          620 ----TVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINN  672 (695)
Q Consensus       620 ----tIrvWDl~t~~~~-l~~~~gh~~~V~sl~fspdg~~llaSgs~D------g~IriWDl~t  672 (695)
                          +|..||..+.... +..+...... .+++.. ++ .|++.|+.+      ..|..||..+
T Consensus       429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~~~-~~-~IYv~GG~~~~~~~~~~ve~Ydp~~  489 (557)
T PHA02713        429 HSSNKVIRYDTVNNIWETLPNFWTGTIR-PGVVSH-KD-DIYVVCDIKDEKNVKTCIFRYNTNT  489 (557)
T ss_pred             cccceEEEECCCCCeEeecCCCCccccc-CcEEEE-CC-EEEEEeCCCCCCccceeEEEecCCC
Confidence                4778888775431 1111111111 122222 33 366677654      2467899887

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=80.14  E-value=6.5  Score=28.10  Aligned_cols=32  Identities=13%  Similarity=0.196  Sum_probs=24.4

Q ss_pred             ecCCCCeEEEEEecCCCeEEEEEeCC--CcEEEE
Q 005473          637 TGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYW  668 (695)
Q Consensus       637 ~gh~~~V~sl~fspdg~~llaSgs~D--g~IriW  668 (695)
                      ......-....|+|||+.|++++..+  |...||
T Consensus         5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            33455678899999999999998888  777776

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	695
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-12
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-12
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		2e-12
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-12
2h9l_A	329	Wdr5delta23 Length = 329		2e-11
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-11
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-11
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-11
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-11
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-11
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-11
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-11
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-11
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-11
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-11
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-11
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-11
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-11
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		8e-11
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		8e-11
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-10
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		6e-10
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		2e-09
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		1e-08
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-08
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		1e-08
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		2e-07
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-07
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		4e-07
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		5e-07
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		5e-07
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		5e-07
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		5e-07
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		5e-07
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-06
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-06
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-06
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-06
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		2e-06
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		2e-06
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		9e-06
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-05
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-05
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		6e-05
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		3e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		3e-05
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		4e-05
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		5e-05
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		4e-05
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		4e-05
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		4e-05
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		5e-05
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		5e-05
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		7e-05
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		7e-05
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		8e-05
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		8e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		1e-04
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		4e-04
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		4e-04
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		8e-04
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		9e-04

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 3/144 (2%)
Query: 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 591
           ++GR +E  K     +F L    T  V S  FSP+G+ LA+   DK   +W       + 
Sbjct: 4   QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 62
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
           T+  H   I+DV +S   + L ++S D+T+++WD  +    L+T  GHS  V   +F+P 
Sbjct: 63  TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP- 120
Query: 652 KEDLLCSCDNNSEIRYWSINNGSC 675
           + +L+ S   +  +R W +  G C
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKC 144

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 3/144 (2%)
Query: 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 591
           ++GR +E  K     +F L    T  V S  FSP+G+ LA+   DK   +W       + 
Sbjct: 4   QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 62
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
           T+  H   I+DV +S   + L ++S D+T+++WD  +    L+T  GHS  V   +F+P 
Sbjct: 63  TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP- 120
Query: 652 KEDLLCSCDNNSEIRYWSINNGSC 675
           + +L+ S   +  +R W +  G C
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKC 144

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 512 GSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLA 571
           GS D  V  +   + AD            + F      +I    ++V+   +S DG  LA
Sbjct: 76  GSFDSTVSIWAKEESAD------------RTFEMDLLAIIEGHENEVKGVAWSNDGYYLA 123
Query: 572 TGGHDKKAVLWCT----ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627
           T   DK   +W T    E +   S L+EH+Q +  V + PS + LA+SS D TVR+W   
Sbjct: 124 TCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDY 183
Query: 628 NPDY-SLRTFTGHSTTVMSLDFHPSKEDL-LCSCDNNSEIRYW 668
           + D+  +    GH  TV S DF  ++    LCS  ++S +R W
Sbjct: 184 DDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 3/144 (2%)
Query: 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 591
           ++GR +E  K     +F L    T  V S  FSP+G+ LA    DK   +W       + 
Sbjct: 4   QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEK 62
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
           T+  H   I+DV +S   + L ++S D+T+++WD  +    L+T  GHS  V   +F+P 
Sbjct: 63  TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP- 120
Query: 652 KEDLLCSCDNNSEIRYWSINNGSC 675
           + +L+ S   +  +R W +  G C
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKC 144

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 2/125 (1%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
           +   T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   +
Sbjct: 36  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
            L ++S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +
Sbjct: 96  LLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDV 153
Query: 671 NNGSC 675
             G C
Sbjct: 154 KTGKC 158

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 29  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 89  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 675 C 675
           C
Sbjct: 147 C 147

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 28  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 87
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 88  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 145
Query: 675 C 675
           C
Sbjct: 146 C 146

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 22  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 81
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 82  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 139
Query: 675 C 675
           C
Sbjct: 140 C 140

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 47  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 106
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 107 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 164
Query: 675 C 675
           C
Sbjct: 165 C 165

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 29  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 89  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 675 C 675
           C
Sbjct: 147 C 147

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 29  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 89  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 675 C 675
           C
Sbjct: 147 C 147

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 45  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 105 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162
Query: 675 C 675
           C
Sbjct: 163 C 163

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 23  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 82
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 83  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 140
Query: 675 C 675
           C
Sbjct: 141 C 141

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 23  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 82
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 83  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 140
Query: 675 C 675
           C
Sbjct: 141 C 141

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 24  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 83
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 84  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 141
Query: 675 C 675
           C
Sbjct: 142 C 142

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 19  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 78
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 79  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 136
Query: 675 C 675
           C
Sbjct: 137 C 137

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 26  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 86  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGM 143
Query: 675 C 675
           C
Sbjct: 144 C 144

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 26  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 86  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGM 143
Query: 675 C 675
           C
Sbjct: 144 C 144

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 66/125 (52%), Gaps = 4/125 (3%)
Query: 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
             Q +   +S V    FSPDG+ +A+   DK   LW      ++ TL  H+  +  V FS
Sbjct: 336 HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFS 394
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
           P    +A++S D+TV++W+       L+T TGHS++V  + F P  + +  + D+ + ++
Sbjct: 395 PDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT-VK 451
Query: 667 YWSIN 671
            W+ N
Sbjct: 452 LWNRN 456

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 62/116 (53%), Gaps = 5/116 (4%)
Query: 557 KVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLA 613
           +V+S  ++P G LLAT   DK   +W  +    +   S L  HTQ +  V + PS   LA
Sbjct: 107 EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLA 166
Query: 614 TSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
           ++S D TV+++  E  D+    T  GH +TV SL F PS + L  SC ++  +R W
Sbjct: 167 SASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLA-SCSDDRTVRIW 221

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 611
           P+S   + S  FSPDGK LATG  D+   +W  E+  +   L+ H Q I  + + PS  +
Sbjct: 120 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK 179
Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
           L + S DRTVR+WD      SL        T +++   P     + +   +  +R W   
Sbjct: 180 LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS--PGDGKYIAAGSLDRAVRVWDSE 237
Query: 672 NG 673
            G
Sbjct: 238 TG 239

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 71/179 (39%), Gaps = 26/179 (14%)
Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV 589
           RD+  +  EV  G+    F         V     + DG L+A+  +D+   +W   +   
Sbjct: 212 RDKTIKMWEVQTGYCVKTF---TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC 268
Query: 590 KSTLEEHTQWITDVRFSPSLSR--------------------LATSSADRTVRVWDTENP 629
           K+ L EH   +  + ++P  S                     L + S D+T+++WD  + 
Sbjct: 269 KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV-ST 327
Query: 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVS 688
              L T  GH   V  + FH   + +L SC ++  +R W   N  C     N  E FV+
Sbjct: 328 GMCLMTLVGHDNWVRGVLFHSGGKFIL-SCADDKTLRVWDYKNKRCMKTL-NAHEHFVT 384

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 17/183 (9%)
Query: 522 LSPDDADPRDRVGRSAEVGK-----GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 576
           L  D    + R+  S++ GK      FT  +   +    + V +C ++P G  +A GG D
Sbjct: 68  LCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLD 127
Query: 577 KKAVLW-----CTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630
            K  ++       E+   K  ++  HT +++   F+ S  ++ T+S D T  +WD E+  
Sbjct: 128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ 187
Query: 631 YSLRTFTGHSTTVMSLDFHPSKED---LLCSCDNNSEIRYWSINNGSCAGVFKNFFESFV 687
             L++F GH   V+ LD  PS+     +   CD  + +  W + +G C   F+       
Sbjct: 188 L-LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMV--WDMRSGQCVQAFETHESDVN 244
Query: 688 SVR 690
           SVR
Sbjct: 245 SVR 247

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 4/142 (2%)
Query: 535 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594
           ++ +V K  T  +   I A   +V  C FS D   +AT   DKK  +W + +  +  T +
Sbjct: 644 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD 703
Query: 595 EHTQWITDVRFSPSLSR--LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
           EH++ +    F+   +   LAT S D  +++WD  N      T  GH+ +V    F P  
Sbjct: 704 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNHCRFSPDD 762
Query: 653 EDLLCSCDNNSEIRYWSINNGS 674
           E LL SC  +  +R W + + +
Sbjct: 763 E-LLASCSADGTLRLWDVRSAN 783

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 4/142 (2%)
Query: 535 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594
           ++ +V K  T  +   I A   +V  C FS D   +AT   DKK  +W + +  +  T +
Sbjct: 637 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD 696
Query: 595 EHTQWITDVRFSPSLSR--LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
           EH++ +    F+   +   LAT S D  +++WD  N      T  GH+ +V    F P  
Sbjct: 697 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNHCRFSPDD 755
Query: 653 EDLLCSCDNNSEIRYWSINNGS 674
           E LL SC  +  +R W + + +
Sbjct: 756 E-LLASCSADGTLRLWDVRSAN 776

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
           FSPD + LATG H  K  ++  ES   + +L+   ++I  + +SP    LA+ + D  + 
Sbjct: 130 FSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 189
Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
           ++D       L T  GH+  + SL F P  + LL +  ++  I+ + + + + AG  
Sbjct: 190 IFDIATGKL-LHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQHANLAGTL 244

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625
           DG+ + +G +D    +W  E+ T   TL+ HT  +  ++F      + + S D ++RVWD
Sbjct: 248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG--IHVVSGSLDTSIRVWD 305
Query: 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675
            E  +  + T TGH +    ++    K+++L S + +S ++ W I  G C
Sbjct: 306 VETGN-CIHTLTGHQSLTSGMEL---KDNILVSGNADSTVKIWDIKTGQC 351

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 9/142 (6%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
           +T  +   IP  +S V +C ++P G  +A GG D    ++  ++      V   L  HT 
Sbjct: 96  YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 155
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC- 657
           +++  RF    +++ TSS D T  +WD E       TFTGH+  VMSL   P     +  
Sbjct: 156 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTRLFVSG 213
Query: 658 SCDNNSEIRYWSINNGSCAGVF 679
           +CD ++++  W +  G C   F
Sbjct: 214 ACDASAKL--WDVREGMCRQTF 233

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 9/142 (6%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
           +T  +   IP  +S V +C ++P G  +A GG D    ++  ++      V   L  HT 
Sbjct: 85  YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC- 657
           +++  RF    +++ TSS D T  +WD E       TFTGH+  VMSL   P     +  
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTRLFVSG 202
Query: 658 SCDNNSEIRYWSINNGSCAGVF 679
           +CD ++++  W +  G C   F
Sbjct: 203 ACDASAKL--WDVREGMCRQTF 222

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 9/142 (6%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
           +T  +   IP  +S V +C ++P G  +A GG D    ++  ++      V   L  HT 
Sbjct: 85  YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC- 657
           +++  RF    +++ TSS D T  +WD E       TFTGH+  VMSL   P     +  
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTRLFVSG 202
Query: 658 SCDNNSEIRYWSINNGSCAGVF 679
           +CD ++++  W +  G C   F
Sbjct: 203 ACDASAKL--WDVREGMCRQTF 222

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 9/142 (6%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
           +T  +   IP  +S V +C ++P G  +A GG D    ++  ++      V   L  HT 
Sbjct: 85  YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC- 657
           +++  RF    +++ TSS D T  +WD E       TFTGH+  VMSL   P     +  
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTRLFVSG 202
Query: 658 SCDNNSEIRYWSINNGSCAGVF 679
           +CD ++++  W +  G C   F
Sbjct: 203 ACDASAKL--WDVREGMCRQTF 222

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 9/142 (6%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
           +T  +   IP  +S V +C ++P G  +A GG D    ++  ++      V   L  HT 
Sbjct: 85  YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC- 657
           +++  RF    +++ TSS D T  +WD E       TFTGH+  VMSL   P     +  
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTRLFVSG 202
Query: 658 SCDNNSEIRYWSINNGSCAGVF 679
           +CD ++++  W +  G C   F
Sbjct: 203 ACDASAKL--WDVREGMCRQTF 222

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 16/138 (11%)
Query: 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFS 606
            L+ A T++V    F+P  + +LATG  DK   LW   +  +K  T E H   I  V +S
Sbjct: 269 HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS 328
Query: 607 P-SLSRLATSSADRTVRVWD-------------TENPDYSLRTFTGHSTTVMSLDFHPSK 652
           P + + LA+S  DR + VWD              + P   L    GH+  +    ++P++
Sbjct: 329 PHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNE 388
Query: 653 EDLLCSCDNNSEIRYWSI 670
             ++CS   ++ ++ W +
Sbjct: 389 PWVICSVSEDNIMQIWQM 406

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 9/132 (6%)
Query: 562 HFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 618
           H   +  ++ T   D+   +W   S    T++  L  H   +  V F      + ++S D
Sbjct: 218 HLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY--IVSASGD 275
Query: 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV 678
           RT++VW+T   ++ +RT  GH   +  L +   ++ L+ S  +++ IR W I  G+C  V
Sbjct: 276 RTIKVWNTSTCEF-VRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRV 331
Query: 679 FKNFFESFVSVR 690
            +   E    +R
Sbjct: 332 LEGHEELVRCIR 343

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 16/136 (11%)
Query: 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFS 606
            L+ A T++V    F+P  + +LATG  DK   LW   +  +K  T E H   I  V +S
Sbjct: 269 HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS 328
Query: 607 P-SLSRLATSSADRTVRVWD-------------TENPDYSLRTFTGHSTTVMSLDFHPSK 652
           P + + LA+S  DR + VWD              + P   L    GH+  +    ++P++
Sbjct: 329 PHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNE 388
Query: 653 EDLLCSCDNNSEIRYW 668
             ++CS   ++  + W
Sbjct: 389 PWVICSVSEDNIXQIW 404

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
           + A T++V    F+P  + +LATG  DK   LW   +  +K  + E H   I  V++SP 
Sbjct: 277 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 336
Query: 608 SLSRLATSSADRTVRVWD---------TEN----PDYSLRTFTGHSTTVMSLDFHPSKED 654
           + + LA+S  DR + VWD         TE+    P   L    GH+  +    ++P++  
Sbjct: 337 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 396
Query: 655 LLCSCDNNSEIRYWSI 670
           ++CS   ++ ++ W +
Sbjct: 397 IICSVSEDNIMQVWQM 412

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
           + A T++V    F+P  + +LATG  DK   LW   +  +K  + E H   I  V++SP 
Sbjct: 275 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 334
Query: 608 SLSRLATSSADRTVRVWD---------TEN----PDYSLRTFTGHSTTVMSLDFHPSKED 654
           + + LA+S  DR + VWD         TE+    P   L    GH+  +    ++P++  
Sbjct: 335 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 394
Query: 655 LLCSCDNNSEIRYWSI 670
           ++CS   ++ ++ W +
Sbjct: 395 IICSVSEDNIMQVWQM 410

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
           + A T++V    F+P  + +LATG  DK   LW   +  +K  + E H   I  V++SP 
Sbjct: 273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 332
Query: 608 SLSRLATSSADRTVRVWD---------TEN----PDYSLRTFTGHSTTVMSLDFHPSKED 654
           + + LA+S  DR + VWD         TE+    P   L    GH+  +    ++P++  
Sbjct: 333 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 392
Query: 655 LLCSCDNNSEIRYWSI 670
           ++CS   ++ ++ W +
Sbjct: 393 IICSVSEDNIMQVWQM 408

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
           + A T++V    F+P  + +LATG  DK   LW   +  +K  + E H   I  V++SP 
Sbjct: 269 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 328
Query: 608 SLSRLATSSADRTVRVWD-------------TENPDYSLRTFTGHSTTVMSLDFHPSKED 654
           + + LA+S  DR + VWD              + P   L    GH+  +    ++P++  
Sbjct: 329 NETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 388
Query: 655 LLCSCDNNSEIRYWSI 670
           ++CS   ++ ++ W +
Sbjct: 389 VICSVSEDNIMQVWQM 404

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 11/125 (8%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCT---ESFTVKSTLEEHTQWITDVRFSPSLSR 611
           T  V S  FS D + + +G  DK   LW T     +TV+   E H++W++ VRFSP+ S 
Sbjct: 128 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSCVRFSPNSSN 185
Query: 612 --LATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
             + +   D+ V+VW+  N    L+T   GH+  + ++   P    L  S   + +   W
Sbjct: 186 PIIVSCGWDKLVKVWNLANC--KLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLW 242
Query: 669 SINNG 673
            +N G
Sbjct: 243 DLNEG 247

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 11/125 (8%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCT---ESFTVKSTLEEHTQWITDVRFSPSLSR 611
           T  V S  FS D + + +G  DK   LW T     +TV+   E H++W++ VRFSP+ S 
Sbjct: 105 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSCVRFSPNSSN 162
Query: 612 --LATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
             + +   D+ V+VW+  N    L+T   GH+  + ++   P    L  S   + +   W
Sbjct: 163 PIIVSCGWDKLVKVWNLAN--CKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLW 219
Query: 669 SINNG 673
            +N G
Sbjct: 220 DLNEG 224

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 83/188 (44%), Gaps = 32/188 (17%)
Query: 502 LTDMDRFVDDGSL-DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560
           LT  + FV D +L  +N  +  S       D+  R  ++  G T+  F       S+V S
Sbjct: 72  LTGHNHFVSDLALSQENCFAISSS-----WDKTLRLWDLRTGTTYKRF---VGHQSEVYS 123
Query: 561 CHFSPDGKLLATGGHDKKAVLW-----CTESFTVKSTLEEHTQWITDVRFSPSLS----- 610
             FSPD + + + G +++  LW     C  S   K   E H+ W++ VR+SP +      
Sbjct: 124 VAFSPDNRQILSAGAEREIKLWNILGECKFSSAEK---ENHSDWVSCVRYSPIMKSANKV 180
Query: 611 -----RLATSSADRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664
                  A+   D  ++VW+T   ++ +R TF  H + V  L   P+ +  + +   + +
Sbjct: 181 QPFAPYFASVGWDGRLKVWNT---NFQIRYTFKAHESNVNHLSISPNGK-YIATGGKDKK 236
Query: 665 IRYWSINN 672
           +  W I N
Sbjct: 237 LLIWDILN 244

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 10/117 (8%)
Query: 566 DGKLLATGGHDKKAVLWCTES------FTV-KSTLEEHTQWITDVRFSPSLSRLATSSAD 618
           D  +L +G  DK  ++W          F +    L  H  +++D+  S       +SS D
Sbjct: 38  DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675
           +T+R+WD      + + F GH + V S+ F P    +L S     EI+ W+I  G C
Sbjct: 98  KTLRLWDLRTGT-TYKRFVGHQSEVYSVAFSPDNRQIL-SAGAEREIKLWNI-LGEC 151

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 8/142 (5%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPS-LSRLATS 615
           + S    P    + +G  D    LW  E+ + ++ T E H  ++  V F+P   S  A+ 
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 616 SADRTVRVWDT--ENPDYSLRTFTGHSTTVMSLDFHPSKED-LLCSCDNNSEIRYWSINN 672
             DRTV+VW      P+++L   TG    V  +D++P  +   + +  ++  I+ W    
Sbjct: 160 CLDRTVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217
Query: 673 GSCAGVFKNFFESFVSVRVVQP 694
            SC    +    S VS  V  P
Sbjct: 218 KSCVATLEGHM-SNVSFAVFHP 238

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
Query: 564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623
           S  G ++ +G +D   ++W          L  HT  I    +     R  ++S D T+R+
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 336
Query: 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           WD EN +  + T  GH+  V  L      +  L S   +  IR W  N+ S
Sbjct: 337 WDLENGEL-MYTLQGHTALVGLLRL---SDKFLVSAAADGSIRGWDANDYS 383

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 564 SPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSPSL---SRLATSS 616
           + + +   TGG D    +W      +++ ++STLE H+ W+ DV +SP++   S LA+ S
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226
Query: 617 ADRTVRVWDTEN 628
            DRT  +W  +N
Sbjct: 227 QDRTCIIWTQDN 238

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
           H + I D        RLAT S+D+T+++++ E   + L  T TGH   V  +D+ HP   
Sbjct: 8   HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNG 673
            +L SC  + ++  W   NG
Sbjct: 68  TILASCSYDGKVLIWKEENG 87

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVMSLD 647
           +TL  H+Q +  +R++P    LA+   D  V VW +   E     L+TFT H   V ++ 
Sbjct: 235 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 294
Query: 648 FHPSKEDLLCSCDNNSE--IRYWSINNGSC 675
           + P + ++L +    S+  IR W++ +G+C
Sbjct: 295 WCPWQSNVLATGGGTSDRHIRIWNVCSGAC 324

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 8/142 (5%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPS-LSRLATS 615
           + S    P    + +G  D    LW  E+ + ++ T E H  ++  V F+P   S  A+ 
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 616 SADRTVRVWDT--ENPDYSLRTFTGHSTTVMSLDFHPSKED-LLCSCDNNSEIRYWSINN 672
             DRTV+VW      P+++L   TG    V  +D++P  +   + +  ++  I+ W    
Sbjct: 160 CLDRTVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217
Query: 673 GSCAGVFKNFFESFVSVRVVQP 694
            SC    +    + VS  V  P
Sbjct: 218 KSCVATLEGHMSN-VSFAVFHP 238

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
           H + I D        RLAT S+D+T+++++ E   + L  T TGH   V  +D+ HP   
Sbjct: 10  HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 69
Query: 654 DLLCSCDNNSEIRYWSINNG 673
            +L SC  + ++  W   NG
Sbjct: 70  TILASCSYDGKVLIWKEENG 89

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
           H + I D        RLAT S+D+T+++++ E   + L  T TGH   V  +D+ HP   
Sbjct: 8   HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQ 693
            +L SC  + ++  W   NG  + +  +   S  SV  VQ
Sbjct: 68  TILASCSYDGKVLIWKEENGRWSQIAVHAVHS-ASVNSVQ 106

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVMSLD 647
           +TL  H+Q +  +R++P    LA+   D  V VW +   E     L+TFT H   V ++ 
Sbjct: 224 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 283
Query: 648 FHPSKEDLLCSCDNNSE--IRYWSINNGSC 675
           + P + ++L +    S+  IR W++ +G+C
Sbjct: 284 WCPWQSNVLATGGGTSDRHIRIWNVCSGAC 313

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
           H + I D        R+AT S+D+T+++++ E   + L  T TGH   V  +D+ HP   
Sbjct: 8   HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQ 693
            +L SC  + ++  W   NG  + +  +   S  SV  VQ
Sbjct: 68  TILASCSYDGKVMIWKEENGRWSQIAVHAVHS-ASVNSVQ 106

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVMSLD 647
           +TL  H+Q +  +R++P    LA+   D  V VW +   E     L+TFT H   V ++ 
Sbjct: 144 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 203
Query: 648 FHPSKEDLLCSCDNNSE--IRYWSINNGSC 675
           + P + ++L +    S+  IR W++ +G+C
Sbjct: 204 WCPWQSNVLATGGGTSDRHIRIWNVCSGAC 233

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 8/142 (5%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPS-LSRLATS 615
           + S    P    + +G  D    LW  E+ + ++ T E H  ++  V F+P   S  A+ 
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 616 SADRTVRVWDT--ENPDYSLRTFTGHSTTVMSLDFHPSKED-LLCSCDNNSEIRYWSINN 672
             DRTV+VW      P+++L   TG    V  +D++P  +   + +  ++  I+ W    
Sbjct: 160 CLDRTVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217
Query: 673 GSCAGVFKNFFESFVSVRVVQP 694
            SC    +    + VS  V  P
Sbjct: 218 KSCVATLEGHMSN-VSFAVFHP 238

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 8/142 (5%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPS-LSRLATS 615
           + S    P    + +G  D    LW  E+ + ++ T E H  ++  V F+P   S  A+ 
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 616 SADRTVRVWDT--ENPDYSLRTFTGHSTTVMSLDFHPSKED-LLCSCDNNSEIRYWSINN 672
             DRTV+VW      P+++L   TG    V  +D++P  +   + +  ++  I+ W    
Sbjct: 160 CLDRTVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217
Query: 673 GSCAGVFKNFFESFVSVRVVQP 694
            SC    +    + VS  V  P
Sbjct: 218 KSCVATLEGHMSN-VSFAVFHP 238

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Query: 564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623
           S  G ++ +G +D   ++W          L  HT  I    +     R  ++S D T+R+
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRI 336
Query: 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           WD EN +    T  GH+  V  L      +  L S   +  IR W  N+ S
Sbjct: 337 WDLENGELXY-TLQGHTALVGLLRL---SDKFLVSAAADGSIRGWDANDYS 383

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 564 SPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSPSL---SRLATSS 616
           + + +   TGG D    +W      +++ ++STLE H+ W+ DV +SP++   S  A+ S
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVS 226
Query: 617 ADRTVRVWDTEN 628
            DRT  +W  +N
Sbjct: 227 QDRTCIIWTQDN 238

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
           H + I D        R AT S+D+T+++++ E   + L  T TGH   V  +D+ HP   
Sbjct: 8   HNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQ 693
            +L SC  + ++  W   NG  + +  +   S  SV  VQ
Sbjct: 68  TILASCSYDGKVXIWKEENGRWSQIAVHAVHS-ASVNSVQ 106

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 14/126 (11%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSL- 609
           V  C F+P+G+ +A GG D    ++   S         V   L  H  + +  ++ P   
Sbjct: 111 VMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE 170
Query: 610 SRLATSSADRTVRVWDTENPDYSLRTF-----TGHSTTVMSLDFHPSKEDLLCSCDNNSE 664
           +RL T S D+T  +WD       +  F     +GH+  V+SL  +    ++  S   ++ 
Sbjct: 171 TRLITGSGDQTCVLWDVTTGQ-RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTT 229
Query: 665 IRYWSI 670
           +R W +
Sbjct: 230 VRLWDL 235

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSP 607
           T  V S  ++PDG L A+ G D   VL+     T     E+       H+  +  + +SP
Sbjct: 190 TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 249
Query: 608 SLSRLATSSADRTVRVWD 625
             +++A++SAD+T+++W+
Sbjct: 250 DGTKIASASADKTIKIWN 267

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	695
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.94
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.94
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.94
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.94
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.94
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.94
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.94
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.94
2pm7_B	297	Protein transport protein SEC13, protein transport	99.93
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.93
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.93
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.93
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.93
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.93
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.93
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.93
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.93
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.93
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.93
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.92
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.92
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.92
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.92
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.92
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.91
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.91
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.91
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.91
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.91
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.91
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.91
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.91
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.91
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.91
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.91
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.91
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.91
2pm7_B	297	Protein transport protein SEC13, protein transport	99.91
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.9
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.9
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.9
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.9
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.9
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.9
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.89
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.89
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.89
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.89
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.89
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.89
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.89
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.89
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.89
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.89
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.88
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.88
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.88
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.88
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.88
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.88
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.88
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.88
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.88
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.88
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.88
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.87
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.87
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.87
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.87
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.87
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.87
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.87
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.87
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.87
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.87
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.87
3jro_A	753	Fusion protein of protein transport protein SEC13	99.86
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.86
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.86
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.86
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.86
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.86
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.86
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.86
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.86
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.86
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.86
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.86
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.85
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.85
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.85
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.85
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.85
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.85
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.85
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.85
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.85
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.85
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.84
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.84
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.84
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.84
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.84
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.83
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.83
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.83
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.83
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.83
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.83
3jro_A	753	Fusion protein of protein transport protein SEC13	99.83
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.83
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.83
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.82
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.82
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.82
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.82
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.81
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.81
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.79
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.79
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.78
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.78
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.77
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.75
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.75
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.74
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.71
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.71
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.67
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.65
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.62
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.58
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.57
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.56
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.54
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.52
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.52
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.52
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.51
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.5
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.49
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.46
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.45
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.45
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.44
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.43
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.42
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.42
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.42
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.42
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.42
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.41
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.4
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.39
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.34
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.34
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.33
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.32
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.31
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.31
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.27
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.26
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.23
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.2
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.19
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.19
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.18
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.15
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.12
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.1
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.09
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.07
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.05
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.02
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.01
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.0
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.98
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.96
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.93
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.93
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.9
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.9
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.89
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.87
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.87
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.87
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.85
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.83
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.81
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.79
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.78
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.75
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.74
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.73
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.73
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.72
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.72
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.71
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.67
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.63
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.59
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.57
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.56
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.56
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.54
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.53
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.51
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.5
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.48
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.48
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.44
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.44
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.33
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.33
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.31
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.3
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.23
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.22
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.2
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.18
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.17
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.11
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.06
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.04
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.9
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.88
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.87
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.83
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.83
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.83
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.79
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.74
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.73
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.73
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.72
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.67
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.61
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.61
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.57
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.53
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.47
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.43
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.4
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.4
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.38
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.26
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.24
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.19
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.19
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.15
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.15
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.09
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.04
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.01
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.98
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.98
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.96
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.93
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	96.92
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.91
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.9
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.9
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.88
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.84
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.83
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.76
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.76
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.75
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.75
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.73
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.69
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.66
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.66
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.53
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.53
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.42
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.35
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.27
3iot_A	449	Maltose-binding protein, huntingtin fusion protei;	96.22
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.18
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.18
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.18
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.13
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.03
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.03
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.01
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	95.96
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	95.95
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.84
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.78
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.73
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.68
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	95.68
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.47
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	95.45
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	95.39
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.34
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	95.31
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.29
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.15
3v9f_A	781	Two-component system sensor histidine kinase/RESP	95.0
3kya_A	496	Putative phosphatase; structural genomics, joint c	94.99
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	94.94
3v9f_A	781	Two-component system sensor histidine kinase/RESP	94.85
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	94.74
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.6
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	94.13
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	93.81
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	93.61
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	93.41
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	93.25
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	92.38
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	92.33
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	91.96
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	91.8
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	91.54
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	91.49
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	91.4
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	91.38
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	91.35
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	90.83
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	90.7
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	90.28
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	89.6
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	89.48
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	88.54
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	87.88
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	87.83
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	87.77
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	87.61
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	87.36
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	86.76
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	86.6
1uuj_A	88	Platelet-activating factor acetylhydrolase IB ALP	86.07
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	85.86
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	85.3
2xtc_A	90	F-box-like/WD repeat-containing protein TBL1X; tra	84.89
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	84.14
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	83.72
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	82.07
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	81.78
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	80.24

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.94  E-value=9e-26  Score=242.44  Aligned_cols=168  Identities=16%  Similarity=0.168  Sum_probs=147.1

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEC
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCT  584 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~-~LaSgs~Dg~V~IWDl  584 (695)
                      .+++++|+.|++|++|+...+                   ..+..+.+|.+.|++++|++++. +|++|+.|++|+|||+
T Consensus       139 g~~l~sgs~d~~i~iwd~~~~-------------------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~  199 (344)
T 4gqb_B          139 GTQAVSGSKDICIKVWDLAQQ-------------------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT  199 (344)
T ss_dssp             SSEEEEEETTSCEEEEETTTT-------------------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred             CCEEEEEeCCCeEEEEECCCC-------------------cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccc
Confidence            378999999999999976432                   46678899999999999999885 7899999999999999


Q ss_pred             CCCeEEEEec--ccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeC
Q 005473          585 ESFTVKSTLE--EHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (695)
Q Consensus       585 ~t~~~~~~l~--~H~~~V~~v~~spd-g~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~  661 (695)
                      ++++++..+.  .|...|++++|+|+ +.+|++|+.|++|+|||+++++ ++..+.+|...|++|+|+|++..+|++|+.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~-~~~~~~~h~~~v~~v~fsp~g~~~lasgs~  278 (344)
T 4gqb_B          200 RCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS-CVLSSAVHSQCVTGLVFSPHSVPFLASLSE  278 (344)
T ss_dssp             TSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---CCEEEECCSSCEEEEEECSSSSCCEEEEET
T ss_pred             cccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc-EEEEEcCCCCCEEEEEEccCCCeEEEEEeC
Confidence            9999888774  45678999999995 6788999999999999999866 589999999999999999999778899999


Q ss_pred             CCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          662 NSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       662 Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      |++|+|||+++++++ .+.+|.+.|++|+| +|+
T Consensus       279 D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~-sp~  310 (344)
T 4gqb_B          279 DCSLAVLDSSLSELF-RSQAHRDFVRDATW-SPL  310 (344)
T ss_dssp             TSCEEEECTTCCEEE-EECCCSSCEEEEEE-CSS
T ss_pred             CCeEEEEECCCCcEE-EEcCCCCCEEEEEE-eCC
Confidence            999999999998765 46799999999999 985

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.94  E-value=1.3e-25  Score=237.90  Aligned_cols=199  Identities=19%  Similarity=0.332  Sum_probs=168.3

Q ss_pred             ccCCCCCceEEEEecCCCcccc--------ccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceee
Q 005473          475 QHNGASSKSLLMFGSDGMGSLT--------SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFT  546 (695)
Q Consensus       475 ~~s~s~~~s~l~~~~dg~~~la--------~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~  546 (695)
                      ..+++.+..+..|.......+.        +..-.+.+...++++|+.|+.|++|+...+                   .
T Consensus        95 l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~-------------------~  155 (321)
T 3ow8_A           95 AASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG-------------------K  155 (321)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC-------------------S
T ss_pred             EEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC-------------------c
Confidence            3445566777777654431110        011113344589999999999999976433                   2


Q ss_pred             eEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 005473          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (695)
Q Consensus       547 ~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl  626 (695)
                      ....+..|...|.+++|+|++++|++|+.|+.|+|||+++++++..+.+|...|.+++|+|++.+|++|+.|++|+|||+
T Consensus       156 ~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~  235 (321)
T 3ow8_A          156 KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV  235 (321)
T ss_dssp             EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEET
T ss_pred             eeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEEC
Confidence            34556788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       627 ~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +++. ++..+.+|...|.+++|+|++. +|++|+.|++|+|||+++++++.++.+|.+.|++|+| +|+
T Consensus       236 ~~~~-~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~-s~~  301 (321)
T 3ow8_A          236 QHAN-LAGTLSGHASWVLNVAFCPDDT-HFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKY-NGN  301 (321)
T ss_dssp             TTCC-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE-CTT
T ss_pred             CCcc-eeEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEE-CCC
Confidence            9866 4789999999999999999988 6779999999999999999999999999999999999 985

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.94  E-value=1.5e-25  Score=240.79  Aligned_cols=172  Identities=19%  Similarity=0.218  Sum_probs=147.2

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      ..+++|+.|++|++|+...+..               .......+.+|.+.|++|+|+|+|++|++|+.|++|+|||+++
T Consensus        94 ~~l~~~s~dg~v~lWd~~~~~~---------------~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~  158 (344)
T 4gqb_B           94 RGILVASDSGAVELWELDENET---------------LIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ  158 (344)
T ss_dssp             TEEEEEETTSEEEEEEECTTSS---------------CEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             CeEEEEECCCEEEEEeccCCCc---------------eeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            4578999999999997754421               1122234568999999999999999999999999999999999


Q ss_pred             CeEEEEecccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCeeEEEE--ecCCCCeEEEEEecCCCeEEEEEeCCC
Q 005473          587 FTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTF--TGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (695)
Q Consensus       587 ~~~~~~l~~H~~~V~~v~~spdg-~~LaTgs~DgtIrvWDl~t~~~~l~~~--~gh~~~V~sl~fspdg~~llaSgs~Dg  663 (695)
                      ++++..+.+|.+.|++++|+|++ .+|++++.|++|+|||+++++. +..+  ..|...+++++|+|++..+|++|+.||
T Consensus       159 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg  237 (344)
T 4gqb_B          159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP-ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG  237 (344)
T ss_dssp             TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC-EEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred             CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccce-eeeeecceeeccceeeeecCCCCcceEEeccCC
Confidence            99999999999999999999987 5789999999999999998764 5554  345667999999998888999999999


Q ss_pred             cEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          664 EIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       664 ~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      .|+|||+++++++.++.+|...|++|+| +|+
T Consensus       238 ~v~~wd~~~~~~~~~~~~h~~~v~~v~f-sp~  268 (344)
T 4gqb_B          238 TVSLVDTKSTSCVLSSAVHSQCVTGLVF-SPH  268 (344)
T ss_dssp             EEEEEESCC--CCEEEECCSSCEEEEEE-CSS
T ss_pred             cEEEEECCCCcEEEEEcCCCCCEEEEEE-ccC
Confidence            9999999999999999999999999999 985

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.94  E-value=1.2e-25  Score=246.02  Aligned_cols=183  Identities=21%  Similarity=0.377  Sum_probs=167.5

Q ss_pred             cCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 005473          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (695)
Q Consensus       476 ~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~  555 (695)
                      ..+..++..+.|+|++               .++++|+.|++|++|+...+                   ..+..+.+|.
T Consensus       105 ~gh~~~V~~~~~~p~~---------------~~l~s~s~Dg~i~vwd~~~~-------------------~~~~~l~~h~  150 (410)
T 1vyh_C          105 SGHRSPVTRVIFHPVF---------------SVMVSASEDATIKVWDYETG-------------------DFERTLKGHT  150 (410)
T ss_dssp             ECCSSCEEEEEECSSS---------------SEEEEEESSSCEEEEETTTC-------------------CCCEEECCCS
T ss_pred             cccCCcEEEEEEcCCC---------------CEEEEEeCCCeEEEEECCCC-------------------cEEEEEeccC
Confidence            3456788899999876               68999999999999976443                   2346778999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE
Q 005473          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~  635 (695)
                      +.|.+|+|+|++++|++|+.|++|+|||+.+++++.++.+|...|.+++|+|++.+|++|+.|++|++||++++. ++.+
T Consensus       151 ~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~-~~~~  229 (410)
T 1vyh_C          151 DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-CVKT  229 (410)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEE
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-EEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999866 5899


Q ss_pred             EecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       636 ~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +.+|...|.++.|+|++. +|++|+.|+.|++||+++++++..+.+|...|.+++| +|+
T Consensus       230 ~~~h~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~-~~~  287 (410)
T 1vyh_C          230 FTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREHRHVVECISW-APE  287 (410)
T ss_dssp             EECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE-CCS
T ss_pred             EeCCCccEEEEEECCCCC-EEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEE-cCc
Confidence            999999999999999987 7779999999999999999999999999999999999 884

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.94  E-value=2.5e-25  Score=233.05  Aligned_cols=183  Identities=19%  Similarity=0.267  Sum_probs=162.8

Q ss_pred             CCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 005473          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (695)
Q Consensus       477 s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~  556 (695)
                      .+...+..+.|+|++               .++++|+.|++|++|+...+                   ..+..+..|..
T Consensus        11 ~h~~~V~~~~fsp~~---------------~~l~s~~~dg~v~lWd~~~~-------------------~~~~~~~~~~~   56 (304)
T 2ynn_A           11 NRSDRVKGIDFHPTE---------------PWVLTTLYSGRVELWNYETQ-------------------VEVRSIQVTET   56 (304)
T ss_dssp             EECSCEEEEEECSSS---------------SEEEEEETTSEEEEEETTTT-------------------EEEEEEECCSS
T ss_pred             CCCCceEEEEECCCC---------------CEEEEEcCCCcEEEEECCCC-------------------ceeEEeeccCC
Confidence            345677888888876               78999999999999976432                   35677889999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 005473          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~  636 (695)
                      +|.+++|++++++|++|+.|++|+|||+.+++++..+.+|.+.|++++|+|++.+|++|+.|++|++||++++..+...+
T Consensus        57 ~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~  136 (304)
T 2ynn_A           57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF  136 (304)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEE
T ss_pred             cEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999876667889


Q ss_pred             ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe-cCCCcEEEEEEeCC
Q 005473          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-NFFESFVSVRVVQP  694 (695)
Q Consensus       637 ~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~-~h~~~VtsVaf~sP  694 (695)
                      .+|...|.+++|+|++..+|++|+.|++|++||++++.+...+. +|...|..++| +|
T Consensus       137 ~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~-~~  194 (304)
T 2ynn_A          137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDY-YP  194 (304)
T ss_dssp             CCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEE-CC
T ss_pred             cccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEE-EE
Confidence            99999999999999655688899999999999999887776665 56688999998 76

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.94  E-value=4.9e-25  Score=232.65  Aligned_cols=189  Identities=17%  Similarity=0.259  Sum_probs=165.7

Q ss_pred             cCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 005473          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (695)
Q Consensus       476 ~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~  555 (695)
                      ..+...+..+.|++++.              +++++|+.|++|++|+.....              .....++..+.+|.
T Consensus        14 ~gH~~~V~~l~~~~~~~--------------~~l~s~s~D~~v~~W~~~~~~--------------~~~~~~~~~~~~h~   65 (319)
T 3frx_A           14 EGHNGWVTSLATSAGQP--------------NLLLSASRDKTLISWKLTGDD--------------QKFGVPVRSFKGHS   65 (319)
T ss_dssp             CCCSSCEEEEEECSSCT--------------TEEEEEETTSEEEEEEEEEET--------------TEEEEEEEEEECCS
T ss_pred             ccccceEEEEEccCCCc--------------cEEEEecCCccEEEecCCCCC--------------ccccccceEEeCCc
Confidence            44666788888887654              789999999999999653221              11224567889999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE
Q 005473          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~  635 (695)
                      ..|.+|+|++++++|++|+.|++|+|||+++++++..+.+|...|.+++|+|++.+|++|+.|++|++||++.  .++..
T Consensus        66 ~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~--~~~~~  143 (319)
T 3frx_A           66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--QCLAT  143 (319)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS--CEEEE
T ss_pred             ccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999974  35788


Q ss_pred             EecCCCCeEEEEEecCCC-----eEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          636 FTGHSTTVMSLDFHPSKE-----DLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       636 ~~gh~~~V~sl~fspdg~-----~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +.+|...|.++.|+|.+.     .++++|+.|+.|++||+++++++..+.+|...|++++| +|+
T Consensus       144 ~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~-sp~  207 (319)
T 3frx_A          144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA-SPD  207 (319)
T ss_dssp             ECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEE-CTT
T ss_pred             EeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEE-cCC
Confidence            999999999999998632     37889999999999999999999999999999999999 986

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.94  E-value=6.9e-25  Score=229.67  Aligned_cols=170  Identities=22%  Similarity=0.382  Sum_probs=150.4

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005473          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (695)
Q Consensus       505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl  584 (695)
                      ..+++++|+.|++|++|+...+                   ..+..+.+|.+.|.+|+|+|++++|++|+.|++|+|||+
T Consensus        66 ~~~~l~s~s~d~~i~vwd~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~  126 (304)
T 2ynn_A           66 RKNWIIVGSDDFRIRVFNYNTG-------------------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW  126 (304)
T ss_dssp             GGTEEEEEETTSEEEEEETTTC-------------------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEG
T ss_pred             CCCEEEEECCCCEEEEEECCCC-------------------cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEEC
Confidence            3478999999999999976433                   356678899999999999999999999999999999999


Q ss_pred             CCC-eEEEEecccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEec--CCCeEEEEEe
Q 005473          585 ESF-TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP--SKEDLLCSCD  660 (695)
Q Consensus       585 ~t~-~~~~~l~~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fsp--dg~~llaSgs  660 (695)
                      +++ .+...+.+|...|.+++|+| ++.+|++|+.|++|++||++..........+|...|..++|+|  ++. +|++|+
T Consensus       127 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s  205 (304)
T 2ynn_A          127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP-YMITAS  205 (304)
T ss_dssp             GGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCC-EEEEEE
T ss_pred             CCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCC-EEEEEc
Confidence            877 56678899999999999999 6789999999999999999887654555567778899999987  444 788999


Q ss_pred             CCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          661 NNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       661 ~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      .|++|++||+++++++.++.+|...|++++| +|+
T Consensus       206 ~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~-~p~  239 (304)
T 2ynn_A          206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVF-HPT  239 (304)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEE-CSS
T ss_pred             CCCeEEEEeCCCCccceeeCCCCCCEEEEEE-CCC
Confidence            9999999999999999999999999999999 985

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.94  E-value=1.2e-24  Score=231.56  Aligned_cols=185  Identities=22%  Similarity=0.304  Sum_probs=155.2

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCCC-----------------------------CCCccccccccCCCceeeeEEEecCCC
Q 005473          505 MDRFVDDGSLDDNVESFLSPDDAD-----------------------------PRDRVGRSAEVGKGFTFTEFQLIPAST  555 (695)
Q Consensus       505 ~~~~lasgS~D~~V~lw~~~~~~~-----------------------------~~~~~~~~~d~~~~~~~~~v~~l~~H~  555 (695)
                      ...++++|+.|+.|++|+......                             ..+...++|+..++   ..+..+.+|.
T Consensus       108 ~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~---~~~~~~~~h~  184 (340)
T 1got_B          108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG---QQTTTFTGHT  184 (340)
T ss_dssp             TSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTT---EEEEEECCCS
T ss_pred             CCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCC---cEEEEEcCCC
Confidence            346788888888888887643210                             01222344544443   4567788999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE
Q 005473          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~  635 (695)
                      +.|.+++|+|++++|++|+.|++|+|||++++.++..+.+|...|++++|+|++.+|++|+.|++|++||++++.. +..
T Consensus       185 ~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~-~~~  263 (340)
T 1got_B          185 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE-LMT  263 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEE
T ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE-EEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998654 555


Q ss_pred             Eec--CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          636 FTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       636 ~~g--h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +..  +...|++++|+|++. +|++|+.|+.|++||+.+++++..+.+|.++|++|+| +|+
T Consensus       264 ~~~~~~~~~v~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~-s~d  323 (340)
T 1got_B          264 YSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV-TDD  323 (340)
T ss_dssp             ECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE-CTT
T ss_pred             EccCCcccceEEEEECCCCC-EEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEE-cCC
Confidence            542  335799999999998 6779999999999999999999999999999999999 986

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.93  E-value=9.1e-25  Score=228.03  Aligned_cols=187  Identities=16%  Similarity=0.224  Sum_probs=159.3

Q ss_pred             cCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 005473          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (695)
Q Consensus       476 ~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~  555 (695)
                      ..+...+..+.|++++               +++++|+.|++|++|+....                 ....+.++.+|.
T Consensus         6 ~~h~~~V~~~~~s~~g---------------~~las~s~D~~v~iw~~~~~-----------------~~~~~~~l~gH~   53 (297)
T 2pm7_B            6 NAHNEMIHDAVMDYYG---------------KRMATCSSDKTIKIFEVEGE-----------------THKLIDTLTGHE   53 (297)
T ss_dssp             CSCSSCEEEEEECTTS---------------SEEEEEETTSCEEEEEBCSS-----------------CBCCCEEECCCS
T ss_pred             cCCcCceEEEEECCCC---------------CEEEEEeCCCEEEEEecCCC-----------------CcEEEEEEcccc
Confidence            3456678888888877               78999999999999976422                 113456788999


Q ss_pred             CCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCe--EEEEecccCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCC
Q 005473          556 SKVESCHFSPD--GKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENP  629 (695)
Q Consensus       556 ~~V~~v~fspd--g~~LaSgs~Dg~V~IWDl~t~~--~~~~l~~H~~~V~~v~~spd--g~~LaTgs~DgtIrvWDl~t~  629 (695)
                      +.|.+|+|+++  +++|++|+.|++|+|||+++++  .+..+.+|...|.+++|+|+  +.+|++++.|++|++||+++.
T Consensus        54 ~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~  133 (297)
T 2pm7_B           54 GPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN  133 (297)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSS
T ss_pred             CCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCC
Confidence            99999999864  8999999999999999998774  56678899999999999997  889999999999999999876


Q ss_pred             Ce-eEEEEecCCCCeEEEEEecCC------------CeEEEEEeCCCcEEEEECCCCe----EEEEEecCCCcEEEEEEe
Q 005473          630 DY-SLRTFTGHSTTVMSLDFHPSK------------EDLLCSCDNNSEIRYWSINNGS----CAGVFKNFFESFVSVRVV  692 (695)
Q Consensus       630 ~~-~l~~~~gh~~~V~sl~fspdg------------~~llaSgs~Dg~IriWDl~tg~----~v~~~~~h~~~VtsVaf~  692 (695)
                      .. ....+.+|...|.+++|+|++            ..+|++|+.|+.|++||+++++    ++..+.+|.+.|.+|+| 
T Consensus       134 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~-  212 (297)
T 2pm7_B          134 GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW-  212 (297)
T ss_dssp             SCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE-
T ss_pred             CceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEE-
Confidence            42 246788999999999999973            2478899999999999998765    67788999999999999 


Q ss_pred             CCC
Q 005473          693 QPR  695 (695)
Q Consensus       693 sPd  695 (695)
                      +|+
T Consensus       213 sp~  215 (297)
T 2pm7_B          213 SPT  215 (297)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            985

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.93  E-value=9.2e-25  Score=239.09  Aligned_cols=180  Identities=20%  Similarity=0.367  Sum_probs=163.3

Q ss_pred             CCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCe
Q 005473          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV  558 (695)
Q Consensus       479 s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V  558 (695)
                      ...+..+.|++++               .++++|+.|++|++|+...+                   .++..+.+|...|
T Consensus       192 ~~~V~~v~~~p~~---------------~~l~s~s~D~~i~~wd~~~~-------------------~~~~~~~~h~~~v  237 (410)
T 1vyh_C          192 DHNVSSVSIMPNG---------------DHIVSASRDKTIKMWEVQTG-------------------YCVKTFTGHREWV  237 (410)
T ss_dssp             SSCEEEEEECSSS---------------SEEEEEETTSEEEEEETTTC-------------------CEEEEEECCSSCE
T ss_pred             CCCEEEEEEeCCC---------------CEEEEEeCCCeEEEEECCCC-------------------cEEEEEeCCCccE
Confidence            3467788888866               67899999999999976433                   3456778999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCC--------------------CCEEEEEeCC
Q 005473          559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS--------------------LSRLATSSAD  618 (695)
Q Consensus       559 ~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spd--------------------g~~LaTgs~D  618 (695)
                      .++.|++++++|++|+.|++|+|||+++++++..+.+|...|.+++|+|+                    +.+|++|+.|
T Consensus       238 ~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D  317 (410)
T 1vyh_C          238 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD  317 (410)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCC
Confidence            99999999999999999999999999999999999999999999999996                    6789999999


Q ss_pred             CeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       619 gtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ++|++||++++. ++..+.+|...|++++|+|++. +|++|+.||.|+|||+++++++..+.+|...|++|+| +|+
T Consensus       318 ~~i~iwd~~~~~-~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~-~~~  391 (410)
T 1vyh_C          318 KTIKMWDVSTGM-CLMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF-HKT  391 (410)
T ss_dssp             SEEEEEETTTTE-EEEEEECCSSCEEEEEECSSSS-CEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEE-CSS
T ss_pred             CeEEEEECCCCc-eEEEEECCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEE-cCC
Confidence            999999999865 5889999999999999999998 5569999999999999999999999999999999999 985

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.93  E-value=1.4e-24  Score=231.83  Aligned_cols=182  Identities=23%  Similarity=0.399  Sum_probs=157.0

Q ss_pred             CceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEE
Q 005473          481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES  560 (695)
Q Consensus       481 ~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~  560 (695)
                      .+..+.|+|++               .++++|+.|++|++|+...+.                .........+|...|.+
T Consensus        18 ~v~~l~~sp~g---------------~~las~~~D~~i~iw~~~~~~----------------~~~~~~~~~~h~~~v~~   66 (345)
T 3fm0_A           18 RCWFLAWNPAG---------------TLLASCGGDRRIRIWGTEGDS----------------WICKSVLSEGHQRTVRK   66 (345)
T ss_dssp             CEEEEEECTTS---------------SCEEEEETTSCEEEEEEETTE----------------EEEEEEECSSCSSCEEE
T ss_pred             cEEEEEECCCC---------------CEEEEEcCCCeEEEEEcCCCc----------------ceeeeeeccccCCcEEE
Confidence            67788888877               678999999999999653220                01112234689999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCC--eEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--eeEEEE
Q 005473          561 CHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTF  636 (695)
Q Consensus       561 v~fspdg~~LaSgs~Dg~V~IWDl~t~--~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~--~~l~~~  636 (695)
                      |+|+|++++|++|+.|++|+|||+.+.  +++..+.+|...|.+++|+|++.+|++|+.|++|++||+++..  .++..+
T Consensus        67 ~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  146 (345)
T 3fm0_A           67 VAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL  146 (345)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEE
T ss_pred             EEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEe
Confidence            999999999999999999999999876  4678899999999999999999999999999999999998754  356788


Q ss_pred             ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe--EEEEEecCCCcEEEEEEeCCC
Q 005473          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       637 ~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~--~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      .+|...|.+++|+|++. +|++|+.|+.|++||+++++  ++..+.+|...|++|+| +|+
T Consensus       147 ~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~-sp~  205 (345)
T 3fm0_A          147 NSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAF-DPS  205 (345)
T ss_dssp             CCCCSCEEEEEECSSSS-CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE-CTT
T ss_pred             cCcCCCeEEEEECCCCC-EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEE-CCC
Confidence            89999999999999988 67799999999999998875  56788999999999999 985

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.6e-24  Score=229.74  Aligned_cols=190  Identities=27%  Similarity=0.450  Sum_probs=151.3

Q ss_pred             CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 005473          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (695)
Q Consensus       478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~  557 (695)
                      +...+..+.|+|++               .++++|+.|++|++|+......            .......+..+.+|.+.
T Consensus        57 h~~~v~~v~~sp~~---------------~~las~s~D~~v~iw~~~~~~~------------~~~~~~~~~~~~~h~~~  109 (330)
T 2hes_X           57 HKKAIRSVAWRPHT---------------SLLAAGSFDSTVSIWAKEESAD------------RTFEMDLLAIIEGHENE  109 (330)
T ss_dssp             CCSCEEEEEECTTS---------------SEEEEEETTSCEEEEEC-------------------CCCEEEEEEC----C
T ss_pred             ccCCEEEEEECCCC---------------CEEEEEeCCCcEEEEEcccCcC------------ccccceeEEEEcCCCCc
Confidence            33455566666654               7899999999999997643210            11223566778999999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCC----CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-ee
Q 005473          558 VESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YS  632 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t----~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~-~~  632 (695)
                      |.+|+|+|++++|++|+.|++|+|||++.    .+++..+.+|...|.+++|+|++.+|++|+.|++|++||+.++. .+
T Consensus       110 V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~  189 (330)
T 2hes_X          110 VKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWEC  189 (330)
T ss_dssp             EEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeE
Confidence            99999999999999999999999999943    35778899999999999999999999999999999999997653 46


Q ss_pred             EEEEecCCCCeEEEEEecCC-CeEEEEEeCCCcEEEEECCCC--------eEEEEEec-CCCcEEEEEEeCCC
Q 005473          633 LRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNG--------SCAGVFKN-FFESFVSVRVVQPR  695 (695)
Q Consensus       633 l~~~~gh~~~V~sl~fspdg-~~llaSgs~Dg~IriWDl~tg--------~~v~~~~~-h~~~VtsVaf~sPd  695 (695)
                      +..+.+|.+.|.+++|+|++ ..+|++|+.|++|++||++++        .++..+.+ |...|++|+| +|+
T Consensus       190 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~-s~~  261 (330)
T 2hes_X          190 VAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAW-GFN  261 (330)
T ss_dssp             EEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEE-CTT
T ss_pred             EEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEE-cCC
Confidence            88999999999999999984 236789999999999999765        56666665 9999999999 763

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.93  E-value=6.1e-24  Score=221.65  Aligned_cols=183  Identities=22%  Similarity=0.392  Sum_probs=163.5

Q ss_pred             cCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 005473          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (695)
Q Consensus       476 ~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~  555 (695)
                      ..+...+..+.|++++               +++++|+.|+.|++|+..++                   .....+.+|.
T Consensus        20 ~gh~~~v~~~~~s~~~---------------~~l~s~~~dg~i~iw~~~~~-------------------~~~~~~~~h~   65 (312)
T 4ery_A           20 AGHTKAVSSVKFSPNG---------------EWLASSSADKLIKIWGAYDG-------------------KFEKTISGHK   65 (312)
T ss_dssp             CCCSSCEEEEEECTTS---------------SEEEEEETTSCEEEEETTTC-------------------CEEEEECCCS
T ss_pred             cccCCcEEEEEECCCC---------------CEEEEeeCCCeEEEEeCCCc-------------------ccchhhccCC
Confidence            3456778888898876               78999999999999965432                   2445678999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE
Q 005473          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~  635 (695)
                      ..|.+++|+|++++|++|+.|+.|+|||+++++++..+.+|...|.+++|+|++.+|++|+.|++|++||+++++ ++..
T Consensus        66 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~  144 (312)
T 4ery_A           66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKT  144 (312)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-EEEE
T ss_pred             CceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-EEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999876 4888


Q ss_pred             EecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe-cCCCcEEEEEEeCCC
Q 005473          636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-NFFESFVSVRVVQPR  695 (695)
Q Consensus       636 ~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~-~h~~~VtsVaf~sPd  695 (695)
                      +.+|...|.+++|+|++. +|++|+.||.|++||+++++++..+. .|..+|..++| +|+
T Consensus       145 ~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~~  203 (312)
T 4ery_A          145 LPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF-SPN  203 (312)
T ss_dssp             ECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEE-CTT
T ss_pred             ecCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEE-CCC
Confidence            999999999999999988 67799999999999999999888775 56678999999 885

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.93  E-value=3.8e-24  Score=226.95  Aligned_cols=170  Identities=24%  Similarity=0.436  Sum_probs=142.5

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEe-cC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PA-STSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l-~~-H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl  584 (695)
                      .++++|+.|++|++|+...+.                 ...+..+ .+ |...|.+|+|+|++++|++|+.|++|+|||+
T Consensus        25 ~~las~~~D~~i~lw~~~~~~-----------------~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~   87 (330)
T 2hes_X           25 GILATGSTDRKIKLVSVKYDD-----------------FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAK   87 (330)
T ss_dssp             TEEEEEESSSCEEEEECSSSC-----------------CEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred             CEEEEEcCCCEEEEEEecCCC-----------------eEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEc
Confidence            378999999999999764321                 1233344 34 9999999999999999999999999999998


Q ss_pred             CC-------CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC---eeEEEEecCCCCeEEEEEecCCCe
Q 005473          585 ES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---YSLRTFTGHSTTVMSLDFHPSKED  654 (695)
Q Consensus       585 ~t-------~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~---~~l~~~~gh~~~V~sl~fspdg~~  654 (695)
                      +.       .+++..+.+|...|++++|+|++.+|++|+.|++|++||++...   .++..+.+|...|.+++|+|++. 
T Consensus        88 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-  166 (330)
T 2hes_X           88 EESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-  166 (330)
T ss_dssp             -------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS-
T ss_pred             ccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC-
Confidence            53       45677889999999999999999999999999999999995432   45788999999999999999987 


Q ss_pred             EEEEEeCCCcEEEEECCCC--eEEEEEecCCCcEEEEEEeCCC
Q 005473          655 LLCSCDNNSEIRYWSINNG--SCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       655 llaSgs~Dg~IriWDl~tg--~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +|++|+.|++|++||+.++  +++..+.+|.+.|.+++| +|+
T Consensus       167 ~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~-~~~  208 (330)
T 2hes_X          167 LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDF-DKT  208 (330)
T ss_dssp             EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE-CCS
T ss_pred             EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEe-cCC
Confidence            6779999999999999876  789999999999999999 885

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.93  E-value=2.5e-24  Score=228.16  Aligned_cols=170  Identities=24%  Similarity=0.389  Sum_probs=156.0

Q ss_pred             CCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005473          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (695)
Q Consensus       504 ~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWD  583 (695)
                      ....++++++.|++|++|+...+                   ..+..+..|...|.+++|+|++++|++|+.|+.|+|||
T Consensus        90 ~~~~~l~s~s~D~~i~lWd~~~~-------------------~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~  150 (321)
T 3ow8_A           90 HTLPIAASSSLDAHIRLWDLENG-------------------KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG  150 (321)
T ss_dssp             SSSSEEEEEETTSEEEEEETTTT-------------------EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEE
T ss_pred             CCCCEEEEEeCCCcEEEEECCCC-------------------CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence            33478999999999999976433                   35566778888999999999999999999999999999


Q ss_pred             CCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC
Q 005473          584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (695)
Q Consensus       584 l~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg  663 (695)
                      +++++....+..|...|.+++|+|++++|++|+.|++|++||+++++ ++..+.+|...|.+++|+|++. +|++|+.|+
T Consensus       151 ~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~spd~~-~l~s~s~dg  228 (321)
T 3ow8_A          151 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK-LLHTLEGHAMPIRSLTFSPDSQ-LLVTASDDG  228 (321)
T ss_dssp             TTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCCCEEEECTTSC-EEEEECTTS
T ss_pred             cCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-EEEEEcccCCceeEEEEcCCCC-EEEEEcCCC
Confidence            99999999999999999999999999999999999999999999865 5889999999999999999988 677999999


Q ss_pred             cEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          664 EIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       664 ~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      .|+|||+++++++..+.+|...|++|+| +|+
T Consensus       229 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~-sp~  259 (321)
T 3ow8_A          229 YIKIYDVQHANLAGTLSGHASWVLNVAF-CPD  259 (321)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEE-CTT
T ss_pred             eEEEEECCCcceeEEEcCCCCceEEEEE-CCC
Confidence            9999999999999999999999999999 985

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.93  E-value=4.4e-24  Score=227.13  Aligned_cols=182  Identities=26%  Similarity=0.473  Sum_probs=161.6

Q ss_pred             cCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 005473          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (695)
Q Consensus       476 ~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~  555 (695)
                      ..+...+..+.|++++               +++++|+.|++|++|+....                   ..+..+..|.
T Consensus        52 ~gH~~~v~~~~~s~d~---------------~~l~s~s~Dg~v~iWd~~~~-------------------~~~~~~~~~~   97 (340)
T 1got_B           52 RGHLAKIYAMHWGTDS---------------RLLLSASQDGKLIIWDSYTT-------------------NKVHAIPLRS   97 (340)
T ss_dssp             CCCSSCEEEEEECTTS---------------SEEEEEETTTEEEEEETTTC-------------------CEEEEEECSS
T ss_pred             cCCCCceEEEEECCCC---------------CEEEEEeCCCcEEEEECCCC-------------------CcceEeecCC
Confidence            3456688889998876               78999999999999965432                   3456678899


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 005473          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~----~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~  631 (695)
                      ..|.+|+|+|++++|++|+.|+.|+|||+.+.    .....+.+|.+.|.++.|++++ .|++++.|++|++||++++. 
T Consensus        98 ~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~-  175 (340)
T 1got_B           98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQ-  175 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTE-
T ss_pred             ccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCc-
Confidence            99999999999999999999999999999765    4567788999999999999875 58999999999999999865 


Q ss_pred             eEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       632 ~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ++..+.+|.+.|++++|+|++. ++++|+.|+.|++||+++++++..+.+|...|++|+| +|+
T Consensus       176 ~~~~~~~h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~-~p~  237 (340)
T 1got_B          176 QTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF-FPN  237 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEE-CTT
T ss_pred             EEEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEE-cCC
Confidence            5889999999999999999987 7779999999999999999999999999999999999 985

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.93  E-value=7.8e-24  Score=227.16  Aligned_cols=167  Identities=24%  Similarity=0.338  Sum_probs=149.2

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEEC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCT  584 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fsp--dg~~LaSgs~Dg~V~IWDl  584 (695)
                      ..+++++.|++|++|+...+                   ..+..+.+|...|.+++|+|  ++++|++|+.||+|++||+
T Consensus       167 ~~l~t~s~D~~v~lwd~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~  227 (354)
T 2pbi_B          167 MQILTASGDGTCALWDVESG-------------------QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM  227 (354)
T ss_dssp             SEEEEEETTSEEEEEETTTC-------------------CEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEET
T ss_pred             CEEEEEeCCCcEEEEeCCCC-------------------eEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEEC
Confidence            67899999999999976433                   35667889999999999987  5789999999999999999


Q ss_pred             CCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecC--CCCeEEEEEecCCCeEEEEEeCC
Q 005473          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH--STTVMSLDFHPSKEDLLCSCDNN  662 (695)
Q Consensus       585 ~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh--~~~V~sl~fspdg~~llaSgs~D  662 (695)
                      ++++++..+.+|...|++++|+|++.+|++|+.|++|++||++.... +..+..+  ...+.+++|+|++. +|++|+.|
T Consensus       228 ~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~-~l~~g~~d  305 (354)
T 2pbi_B          228 RSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE-VAIYSKESIIFGASSVDFSLSGR-LLFAGYND  305 (354)
T ss_dssp             TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCTTCCSCEEEEEECTTSS-EEEEEETT
T ss_pred             CCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-EEEEcCCCcccceeEEEEeCCCC-EEEEEECC
Confidence            99999999999999999999999999999999999999999998653 5555433  34789999999988 67799999


Q ss_pred             CcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          663 SEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       663 g~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +.|++||+.+++++..+.+|.+.|++|+| +|+
T Consensus       306 ~~i~vwd~~~~~~~~~l~~h~~~v~~l~~-spd  337 (354)
T 2pbi_B          306 YTINVWDVLKGSRVSILFGHENRVSTLRV-SPD  337 (354)
T ss_dssp             SCEEEEETTTCSEEEEECCCSSCEEEEEE-CTT
T ss_pred             CcEEEEECCCCceEEEEECCCCcEEEEEE-CCC
Confidence            99999999999999999999999999999 986

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.93  E-value=1.3e-23  Score=221.80  Aligned_cols=169  Identities=20%  Similarity=0.390  Sum_probs=150.0

Q ss_pred             CCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005473          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (695)
Q Consensus       503 ~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IW  582 (695)
                      .....++++|+.|++|++|+...+                   ..+..+.+|...|.+++|++++.+|++|+.|++|+||
T Consensus        74 s~dg~~l~s~s~D~~v~~wd~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vw  134 (319)
T 3frx_A           74 TADGAYALSASWDKTLRLWDVATG-------------------ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW  134 (319)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTT-------------------EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred             CCCCCEEEEEeCCCEEEEEECCCC-------------------CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            334489999999999999976433                   3566788999999999999999999999999999999


Q ss_pred             ECCCCeEEEEecccCCCeEEEEEcCC------CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEE
Q 005473          583 CTESFTVKSTLEEHTQWITDVRFSPS------LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL  656 (695)
Q Consensus       583 Dl~t~~~~~~l~~H~~~V~~v~~spd------g~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~ll  656 (695)
                      |++ +.++..+.+|...|.+++|+|.      +.+|++++.|++|++||+++.. +...+.+|...|.+++|+|++. +|
T Consensus       135 d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~sp~g~-~l  211 (319)
T 3frx_A          135 TIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ-IEADFIGHNSNINTLTASPDGT-LI  211 (319)
T ss_dssp             ETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE-EEEEECCCCSCEEEEEECTTSS-EE
T ss_pred             ECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch-hheeecCCCCcEEEEEEcCCCC-EE
Confidence            996 5677888999999999999985      4489999999999999999865 4788999999999999999988 67


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          657 CSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       657 aSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ++|+.||.|+|||+++++++..+..+ ..|.+++| +|+
T Consensus       212 ~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~-sp~  248 (319)
T 3frx_A          212 ASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAF-SPN  248 (319)
T ss_dssp             EEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEE-CSS
T ss_pred             EEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEE-cCC
Confidence            79999999999999999999999865 68999999 986

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.93  E-value=1.1e-23  Score=218.20  Aligned_cols=191  Identities=19%  Similarity=0.285  Sum_probs=163.5

Q ss_pred             cccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecC
Q 005473          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA  553 (695)
Q Consensus       474 l~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~  553 (695)
                      +...+...+..+.|++++               .++++|+.|+.|++|+...+.               .....+..+.+
T Consensus         6 ~~~gH~~~v~~~~~~~~~---------------~~l~~~~~dg~i~iw~~~~~~---------------~~~~~~~~~~~   55 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYG---------------RHVATCSSDQHIKVFKLDKDT---------------SNWELSDSWRA   55 (351)
T ss_dssp             EECCCSSCEEEEEECSSS---------------SEEEEEETTSEEEEEEECSSS---------------CCEEEEEEEEC
T ss_pred             cCcccccceeEEEEcCCC---------------CEEEEeeCCCeEEEEECCCCC---------------Ccceecceecc
Confidence            334566788999999876               789999999999999765331               12355677889


Q ss_pred             CCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCC---------eEEEEecccCCCeEEEEEcCC--CCEEEEEeCCCe
Q 005473          554 STSKVESCHFSP--DGKLLATGGHDKKAVLWCTESF---------TVKSTLEEHTQWITDVRFSPS--LSRLATSSADRT  620 (695)
Q Consensus       554 H~~~V~~v~fsp--dg~~LaSgs~Dg~V~IWDl~t~---------~~~~~l~~H~~~V~~v~~spd--g~~LaTgs~Dgt  620 (695)
                      |...|++++|+|  ++++|++|+.||.|+|||++++         +++..+.+|...|.+++|+|+  +.+|++++.|++
T Consensus        56 ~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~  135 (351)
T 3f3f_A           56 HDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGI  135 (351)
T ss_dssp             CSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCE
T ss_pred             CCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCc
Confidence            999999999999  6999999999999999999887         668888999999999999999  999999999999


Q ss_pred             EEEEECCCCCe-----------------------------------------------------------eEEEEecCCC
Q 005473          621 VRVWDTENPDY-----------------------------------------------------------SLRTFTGHST  641 (695)
Q Consensus       621 IrvWDl~t~~~-----------------------------------------------------------~l~~~~gh~~  641 (695)
                      |++||++++..                                                           ++..+.+|..
T Consensus       136 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  215 (351)
T 3f3f_A          136 LRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKS  215 (351)
T ss_dssp             EEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCS
T ss_pred             EEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCc
Confidence            99999875431                                                           1455668999


Q ss_pred             CeEEEEEecCCC---eEEEEEeCCCcEEEEECCCC---------------------------------------------
Q 005473          642 TVMSLDFHPSKE---DLLCSCDNNSEIRYWSINNG---------------------------------------------  673 (695)
Q Consensus       642 ~V~sl~fspdg~---~llaSgs~Dg~IriWDl~tg---------------------------------------------  673 (695)
                      .|++++|+|++.   .+|++|+.||.|++||++++                                             
T Consensus       216 ~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (351)
T 3f3f_A          216 LIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ  295 (351)
T ss_dssp             CEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEE
T ss_pred             ceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeeccccc
Confidence            999999999983   58889999999999999875                                             


Q ss_pred             -eEEEEEecCCCcEEEEEEeCCC
Q 005473          674 -SCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       674 -~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                       +++..+.+|...|++|+| +|+
T Consensus       296 ~~~~~~~~~h~~~v~~~~~-s~~  317 (351)
T 3f3f_A          296 VELLSEHDDHNGEVWSVSW-NLT  317 (351)
T ss_dssp             EEEEEEECTTSSCEEEEEE-CSS
T ss_pred             ccEEEEEecccccEEEEEE-cCC
Confidence             678888999999999999 985

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.92  E-value=1.8e-23  Score=222.39  Aligned_cols=194  Identities=16%  Similarity=0.252  Sum_probs=159.1

Q ss_pred             CCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 005473          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (695)
Q Consensus       477 s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~  556 (695)
                      .+...+..+.|.....     .    .....++++|+.|++|++|+......            ......+...+.+|..
T Consensus        19 gH~~~V~~~~~~~s~~-----~----~~d~~~l~sgs~D~~v~iWd~~~~~~------------~~~~~~~~~~l~~h~~   77 (343)
T 2xzm_R           19 GHSDWVTSIVAGFSQK-----E----NEDSPVLISGSRDKTVMIWKLYEEEQ------------NGYFGIPHKALTGHNH   77 (343)
T ss_dssp             CCSSCEEEEEECCCSS-----T----TCCCCEEEEEETTSCEEEEEECSSCC------------SSBSEEEEEEECCCSS
T ss_pred             cchhhhhheeeEEEee-----c----CCCCCEEEEEcCCCEEEEEECCcCCc------------ccccccccchhccCCC
Confidence            4556667777632111     0    11237899999999999997654321            1112245677899999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 005473          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~  636 (695)
                      .|.+++|+|++.+|++|+.|++|+|||+++++++..+.+|...|++++|+|++.+|++++.|++|++||+.. .. ....
T Consensus        78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~-~~~~  155 (343)
T 2xzm_R           78 FVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-EC-KFSS  155 (343)
T ss_dssp             CEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CE-EEEC
T ss_pred             ceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-Cc-eeee
Confidence            999999999999999999999999999999999999999999999999999999999999999999999984 32 3333


Q ss_pred             e---cCCCCeEEEEEecCCC---------eEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          637 T---GHSTTVMSLDFHPSKE---------DLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       637 ~---gh~~~V~sl~fspdg~---------~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      .   +|...|.+++|+|++.         .+|++|+.|+.|++|| .++.++..+.+|...|++|+| +|+
T Consensus       156 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~-s~~  224 (343)
T 2xzm_R          156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSI-SPN  224 (343)
T ss_dssp             CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEE-CTT
T ss_pred             ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEE-CCC
Confidence            3   7889999999999872         4788999999999999 457888899999999999999 986

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.92  E-value=9.5e-24  Score=225.25  Aligned_cols=170  Identities=28%  Similarity=0.442  Sum_probs=147.3

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      +++++|+.|++|++|+...+                 ....+..+.+|...|.+|+|+|++++|++|+.|++|+|||+++
T Consensus        74 ~~l~s~s~D~~v~iw~~~~~-----------------~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~  136 (345)
T 3fm0_A           74 NYLASASFDATTCIWKKNQD-----------------DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE  136 (345)
T ss_dssp             SEEEEEETTSCEEEEEECCC------------------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECT
T ss_pred             CEEEEEECCCcEEEEEccCC-----------------CeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCC
Confidence            78999999999999965322                 2345678899999999999999999999999999999999976


Q ss_pred             C---eEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-eeEEEEecCCCCeEEEEEecCCCeEEEEEeCC
Q 005473          587 F---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (695)
Q Consensus       587 ~---~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~-~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D  662 (695)
                      .   .++..+.+|...|.+++|+|++.+|++|+.|++|++||++++. .++.++.+|...|++++|+|++. +|++|+.|
T Consensus       137 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~-~l~s~s~D  215 (345)
T 3fm0_A          137 EDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ-RLASCSDD  215 (345)
T ss_dssp             TSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSS-EEEEEETT
T ss_pred             CCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCC-EEEEEeCC
Confidence            5   4567788999999999999999999999999999999998765 35678999999999999999987 67799999


Q ss_pred             CcEEEEECCC---------------CeEEEEEec-CCCcEEEEEEeCCC
Q 005473          663 SEIRYWSINN---------------GSCAGVFKN-FFESFVSVRVVQPR  695 (695)
Q Consensus       663 g~IriWDl~t---------------g~~v~~~~~-h~~~VtsVaf~sPd  695 (695)
                      ++|+|||+..               .+|+..+.+ |...|.+|+| +|+
T Consensus       216 ~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~-~~~  263 (345)
T 3fm0_A          216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAW-CQL  263 (345)
T ss_dssp             SCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEE-CTT
T ss_pred             CeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEE-ecC
Confidence            9999999632               245666665 8899999999 874

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.92  E-value=6.9e-24  Score=228.04  Aligned_cols=180  Identities=18%  Similarity=0.219  Sum_probs=156.0

Q ss_pred             CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 005473          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (695)
Q Consensus       478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~  557 (695)
                      +...+..+.|++++               +++++|+.|++|++|+...+                   ..+..+.+|...
T Consensus       138 h~~~V~~v~~spdg---------------~~l~sgs~dg~v~iwd~~~~-------------------~~~~~~~~h~~~  183 (357)
T 4g56_B          138 HDDIVKTLSVFSDG---------------TQAVSGGKDFSVKVWDLSQK-------------------AVLKSYNAHSSE  183 (357)
T ss_dssp             CSSCEEEEEECSSS---------------SEEEEEETTSCEEEEETTTT-------------------EEEEEECCCSSC
T ss_pred             CCCCEEEEEECCCC---------------CEEEEEeCCCeEEEEECCCC-------------------cEEEEEcCCCCC
Confidence            34456666776655               78999999999999965432                   456778899999


Q ss_pred             eEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEe--cccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeE
Q 005473          558 VESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSL  633 (695)
Q Consensus       558 V~~v~fspdg~-~LaSgs~Dg~V~IWDl~t~~~~~~l--~~H~~~V~~v~~spd-g~~LaTgs~DgtIrvWDl~t~~~~l  633 (695)
                      |++++|++++. +|++++.|++|+|||+++++++..+  ..|...|++++|+|+ +.+|++|+.|+.|++||+++++ ++
T Consensus       184 v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~-~~  262 (357)
T 4g56_B          184 VNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD-SA  262 (357)
T ss_dssp             EEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG-GC
T ss_pred             EEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCc-Ee
Confidence            99999999875 7899999999999999998877654  457788999999997 5689999999999999999876 48


Q ss_pred             EEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       634 ~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      ..+.+|...|++++|+|++..+|++|+.|++|+|||+++++++..+ +|.+.|++|+| +|
T Consensus       263 ~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vaf-sP  321 (357)
T 4g56_B          263 QTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAW-SP  321 (357)
T ss_dssp             EEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEE-CS
T ss_pred             EEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEE-eC
Confidence            8999999999999999998878999999999999999999888765 89999999999 98

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.92  E-value=2.3e-23  Score=223.54  Aligned_cols=184  Identities=24%  Similarity=0.410  Sum_probs=161.2

Q ss_pred             cCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 005473          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (695)
Q Consensus       476 ~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~  555 (695)
                      ..+...+.++.|++++               .++++|+.|++|++|+....                   .....+..|.
T Consensus        61 ~gH~~~V~~~~~s~d~---------------~~l~s~s~Dg~v~vWd~~~~-------------------~~~~~~~~~~  106 (354)
T 2pbi_B           61 KGHGNKVLCMDWCKDK---------------RRIVSSSQDGKVIVWDSFTT-------------------NKEHAVTMPC  106 (354)
T ss_dssp             ECCSSCEEEEEECTTS---------------SEEEEEETTSEEEEEETTTC-------------------CEEEEEECSS
T ss_pred             cCCCCeEEEEEECCCC---------------CEEEEEeCCCeEEEEECCCC-------------------CcceEEecCC
Confidence            4566788889998876               78999999999999965332                   2345667788


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC------eEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 005473          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESF------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  629 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~------~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~  629 (695)
                      ..|.+|+|+|+|.+|++|+.|+.|+||++...      .....+.+|...|.+++|+|++..|++++.|++|++||++++
T Consensus       107 ~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~  186 (354)
T 2pbi_B          107 TWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG  186 (354)
T ss_dssp             SCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC
T ss_pred             CCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Confidence            89999999999999999999999999998643      345677889999999999999999999999999999999987


Q ss_pred             CeeEEEEecCCCCeEEEEEecCC-CeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          630 DYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       630 ~~~l~~~~gh~~~V~sl~fspdg-~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      + ++..+.+|...|.+++|+|+. ..+|++|+.||.|++||+++++++..+.+|...|++|+| +|+
T Consensus       187 ~-~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~-~p~  251 (354)
T 2pbi_B          187 Q-LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRY-YPS  251 (354)
T ss_dssp             C-EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE-CTT
T ss_pred             e-EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEE-eCC
Confidence            6 488999999999999999853 247889999999999999999999999999999999999 985

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.92  E-value=3e-23  Score=238.88  Aligned_cols=195  Identities=17%  Similarity=0.315  Sum_probs=158.5

Q ss_pred             CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCC--------------------------
Q 005473          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRD--------------------------  531 (695)
Q Consensus       478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~--------------------------  531 (695)
                      +...+.++.|+|++               +++++|+.|++|++|+.........                          
T Consensus        58 h~~~v~~~~~spdg---------------~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~  122 (611)
T 1nr0_A           58 HSHQTTVAKTSPSG---------------YYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVG  122 (611)
T ss_dssp             CSSCEEEEEECTTS---------------SEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEE
T ss_pred             CCCceEEEEECCCC---------------cEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEE
Confidence            44455666666655               8999999999999998743211000                          


Q ss_pred             ------ccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEE
Q 005473          532 ------RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR  604 (695)
Q Consensus       532 ------~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~-~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~  604 (695)
                            ....+|+.  +   .....+.+|...|++|+|+|++. +|++|+.|++|+|||..+++++.++.+|...|++++
T Consensus       123 ~~~~~~~~v~~wd~--~---~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~  197 (611)
T 1nr0_A          123 EGRERFGHVFLFDT--G---TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVR  197 (611)
T ss_dssp             CCSSCSEEEEETTT--C---CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEE
T ss_pred             CCCCceeEEEEeeC--C---CCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEE
Confidence                  01112221  1   23345789999999999999987 699999999999999999999999999999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe-------cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEE
Q 005473          605 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG  677 (695)
Q Consensus       605 ~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~-------gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~  677 (695)
                      |+|++.+|++|+.|++|+|||+.++.. +..+.       +|.+.|++++|+|++. +|++|+.|++|++||+++++++.
T Consensus       198 fspdg~~las~s~D~~i~lwd~~~g~~-~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~  275 (611)
T 1nr0_A          198 YNPDGSLFASTGGDGTIVLYNGVDGTK-TGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEK  275 (611)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCE-EEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEE
T ss_pred             ECCCCCEEEEEECCCcEEEEECCCCcE-eeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceee
Confidence            999999999999999999999998764 66663       7999999999999988 67799999999999999887654


Q ss_pred             E-------------------------------------------EecCCCcEEEEEEeCCC
Q 005473          678 V-------------------------------------------FKNFFESFVSVRVVQPR  695 (695)
Q Consensus       678 ~-------------------------------------------~~~h~~~VtsVaf~sPd  695 (695)
                      +                                           +.+|...|++|+| +|+
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~-spd  335 (611)
T 1nr0_A          276 TIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSS-SAD  335 (611)
T ss_dssp             EEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEE-CTT
T ss_pred             eecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEE-eCC
Confidence            3                                           3479999999999 986

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.91  E-value=1.3e-23  Score=225.79  Aligned_cols=144  Identities=19%  Similarity=0.288  Sum_probs=131.7

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCC
Q 005473          550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTEN  628 (695)
Q Consensus       550 ~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~-~LaTgs~DgtIrvWDl~t  628 (695)
                      ...+|.+.|++|+|+|++++|++|+.|++|+|||+++++++..+.+|...|++++|+|++. +|++++.|++|+|||+++
T Consensus       134 ~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~  213 (357)
T 4g56_B          134 AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK  213 (357)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS
T ss_pred             ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCC
Confidence            3458999999999999999999999999999999999999999999999999999999864 789999999999999998


Q ss_pred             CCeeEE--EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          629 PDYSLR--TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       629 ~~~~l~--~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ++. +.  .+..|...|++++|+|++..+|++|+.|+.|++||+++++++..+.+|...|++|+| +|+
T Consensus       214 ~~~-~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~-sp~  280 (357)
T 4g56_B          214 PKP-ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAY-SYH  280 (357)
T ss_dssp             SSC-BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEE-CSS
T ss_pred             Cce-eeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEE-cCC
Confidence            764 33  344577789999999998889999999999999999999999999999999999999 985

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.91  E-value=3.1e-23  Score=241.76  Aligned_cols=188  Identities=19%  Similarity=0.274  Sum_probs=161.1

Q ss_pred             CCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 005473          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (695)
Q Consensus       477 s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~  556 (695)
                      .|...+.++.|++++.              +++++|+.|++|++|+......              ........+.+|..
T Consensus       380 ~H~~~V~~v~~~~~~~--------------~~l~s~s~D~~i~~W~~~~~~~--------------~~~~~~~~~~~h~~  431 (694)
T 3dm0_A          380 AHTDMVTAIATPIDNA--------------DIIVSASRDKSIILWKLTKDDK--------------AYGVAQRRLTGHSH  431 (694)
T ss_dssp             CCSSCEEEEECCTTCC--------------SEEEEEETTSEEEEEECCCSTT--------------CSCEEEEEEECCSS
T ss_pred             cCCceeEEEEecCCCC--------------CEEEEEeCCCcEEEEEccCCCc--------------ccccccceecCCCC
Confidence            4555666777666543              7899999999999997754321              01134567889999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 005473          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~  636 (695)
                      .|.+|+|+|++++|++|+.|++|+|||+.++.++..+.+|...|++++|+|++.+|+||+.|++|+|||+....  ...+
T Consensus       432 ~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~--~~~~  509 (694)
T 3dm0_A          432 FVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC--KYTI  509 (694)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE--EEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc--ceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999987532  2222


Q ss_pred             ----ecCCCCeEEEEEecCCC-eEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          637 ----TGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       637 ----~gh~~~V~sl~fspdg~-~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                          .+|...|.+++|+|++. .++++|+.|++|+|||+++++++..+.+|.+.|++|+| +|+
T Consensus       510 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~-spd  572 (694)
T 3dm0_A          510 SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAV-SPD  572 (694)
T ss_dssp             CSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE-CTT
T ss_pred             ccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEE-eCC
Confidence                46888999999999873 47889999999999999999999999999999999999 985

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.91  E-value=3.4e-24  Score=225.86  Aligned_cols=187  Identities=14%  Similarity=0.155  Sum_probs=155.8

Q ss_pred             cCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 005473          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (695)
Q Consensus       476 ~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~  555 (695)
                      ..+...+..+.|++++               +++++|+.|++|++|+...+                 ....+..+.+|.
T Consensus        10 ~~H~~~V~~v~~s~~g---------------~~lasgs~D~~v~lwd~~~~-----------------~~~~~~~l~gH~   57 (316)
T 3bg1_A           10 TSHEDMIHDAQMDYYG---------------TRLATCSSDRSVKIFDVRNG-----------------GQILIADLRGHE   57 (316)
T ss_dssp             ----CCEEEEEECGGG---------------CEEEEEETTTEEEEEEEETT-----------------EEEEEEEEECCS
T ss_pred             ccccCeEEEeeEcCCC---------------CEEEEEeCCCeEEEEEecCC-----------------CcEEEEEEcCCC
Confidence            3456788888998876               68999999999999965322                 123456788999


Q ss_pred             CCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCC--eEEEEecccCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCC
Q 005473          556 SKVESCHFSP--DGKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENP  629 (695)
Q Consensus       556 ~~V~~v~fsp--dg~~LaSgs~Dg~V~IWDl~t~--~~~~~l~~H~~~V~~v~~spd--g~~LaTgs~DgtIrvWDl~t~  629 (695)
                      +.|.+|+|++  ++++|++|+.|++|+|||++++  ..+..+.+|...|.+++|+|+  +.+|++|+.|++|++||++..
T Consensus        58 ~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~  137 (316)
T 3bg1_A           58 GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE  137 (316)
T ss_dssp             SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred             ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence            9999999986  4899999999999999999886  466778899999999999997  789999999999999999875


Q ss_pred             Ce--eEEEEecCCCCeEEEEEecCC----------------CeEEEEEeCCCcEEEEECCCC---eEEEEEecCCCcEEE
Q 005473          630 DY--SLRTFTGHSTTVMSLDFHPSK----------------EDLLCSCDNNSEIRYWSINNG---SCAGVFKNFFESFVS  688 (695)
Q Consensus       630 ~~--~l~~~~gh~~~V~sl~fspdg----------------~~llaSgs~Dg~IriWDl~tg---~~v~~~~~h~~~Vts  688 (695)
                      ..  ....+.+|...|.+++|+|+.                ..+|++|+.|+.|++||++.+   +++..+.+|.+.|.+
T Consensus       138 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~  217 (316)
T 3bg1_A          138 GQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRD  217 (316)
T ss_dssp             SCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEE
T ss_pred             CCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEE
Confidence            42  235567899999999999973                136789999999999999865   578889999999999


Q ss_pred             EEEeCCC
Q 005473          689 VRVVQPR  695 (695)
Q Consensus       689 Vaf~sPd  695 (695)
                      |+| +|+
T Consensus       218 v~~-sp~  223 (316)
T 3bg1_A          218 VAW-APS  223 (316)
T ss_dssp             EEC-CCC
T ss_pred             EEe-cCC
Confidence            999 985

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.91  E-value=1.4e-22  Score=211.43  Aligned_cols=155  Identities=19%  Similarity=0.401  Sum_probs=121.0

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~  585 (695)
                      .+++++|+.|+.|++|+...+                   ..+..+.+|...|.+++|+|++++|++|+.|+.|+|||++
T Consensus        77 ~~~l~s~~~d~~i~vwd~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~  137 (312)
T 4ery_A           77 SNLLVSASDDKTLKIWDVSSG-------------------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK  137 (312)
T ss_dssp             SSEEEEEETTSEEEEEETTTC-------------------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred             CCEEEEECCCCEEEEEECCCC-------------------cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence            478999999999999976432                   3456778999999999999999999999999999999999


Q ss_pred             CCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcE
Q 005473          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (695)
Q Consensus       586 t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~I  665 (695)
                      +++++..+..|...|.+++|+|++.+|++++.|+.|++||++++.........+...|.+++|+|++. +|++++.|+.|
T Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i  216 (312)
T 4ery_A          138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTL  216 (312)
T ss_dssp             TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSS-EEEEEETTTEE
T ss_pred             CCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCC-EEEEEcCCCeE
Confidence            99999999999999999999999999999999999999999986642223344556677777777654 23344444444


Q ss_pred             EEEECCCCeEEEEEe
Q 005473          666 RYWSINNGSCAGVFK  680 (695)
Q Consensus       666 riWDl~tg~~v~~~~  680 (695)
                      ++||+++++++..+.
T Consensus       217 ~iwd~~~~~~~~~~~  231 (312)
T 4ery_A          217 KLWDYSKGKCLKTYT  231 (312)
T ss_dssp             EEEETTTTEEEEEEC
T ss_pred             EEEECCCCcEEEEEE
Confidence            444444444333333

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.91  E-value=3.7e-23  Score=223.66  Aligned_cols=203  Identities=18%  Similarity=0.294  Sum_probs=165.7

Q ss_pred             cCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCC--------------------------C
Q 005473          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDAD--------------------------P  529 (695)
Q Consensus       476 ~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~--------------------------~  529 (695)
                      ..+...+..+.|+|++               +++++|+.|++|++|+...+..                          +
T Consensus        63 ~gH~~~V~~~~~sp~~---------------~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~  127 (380)
T 3iz6_a           63 QGHSGKVYSLDWTPEK---------------NWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGG  127 (380)
T ss_dssp             CCCSSCEEEEEECTTS---------------SCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECC
T ss_pred             cccccEEEEEEEcCCC---------------CEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEee
Confidence            3456788999999877               6789999999999998754321                          1


Q ss_pred             CCccccccccCCC----ceeeeEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEe-----cccCCC
Q 005473          530 RDRVGRSAEVGKG----FTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTL-----EEHTQW  599 (695)
Q Consensus       530 ~~~~~~~~d~~~~----~~~~~v~~l~~H~~~V~~v~fspdg-~~LaSgs~Dg~V~IWDl~t~~~~~~l-----~~H~~~  599 (695)
                      .+...++|+....    ........+.+|.+.|.+|.|+|++ ..|++|+.|++|+|||+++++++..+     .+|...
T Consensus       128 ~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~  207 (380)
T 3iz6_a          128 LDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTAD  207 (380)
T ss_dssp             SSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSC
T ss_pred             CCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccC
Confidence            1222334433221    1112345578999999999999974 57999999999999999999998887     689999


Q ss_pred             eEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEE
Q 005473          600 ITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV  678 (695)
Q Consensus       600 V~~v~~sp-dg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~  678 (695)
                      |.+++|++ ++.+|++|+.|++|++||++....++..+.+|.+.|.+++|+|++. +|++|+.||+|++||+++++++..
T Consensus       208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~lwd~~~~~~~~~  286 (380)
T 3iz6_a          208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRTGHQLQV  286 (380)
T ss_dssp             EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS-EEEEECSSSCEEEEETTTTEEEEE
T ss_pred             eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC-eEEEEcCCCeEEEEECCCCcEEEE
Confidence            99999987 7899999999999999999866667899999999999999999988 677999999999999999999998


Q ss_pred             EecCCC-------cEEEEEEeCCC
Q 005473          679 FKNFFE-------SFVSVRVVQPR  695 (695)
Q Consensus       679 ~~~h~~-------~VtsVaf~sPd  695 (695)
                      +..+..       .|++++| +|+
T Consensus       287 ~~~~~~~~~~~~~~v~~~~~-s~~  309 (380)
T 3iz6_a          287 YNREPDRNDNELPIVTSVAF-SIS  309 (380)
T ss_dssp             ECCCCSSSCCSSCSCSEEEE-CSS
T ss_pred             ecccccccccccCceEEEEE-CCC
Confidence            876533       4899999 985

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.91  E-value=6.3e-23  Score=221.84  Aligned_cols=216  Identities=19%  Similarity=0.235  Sum_probs=165.4

Q ss_pred             cccCCCCCceEEEEecCCCccc--------cccCCccCCCCcEEEEeeCCCcEEEEeCCCCCC-----------------
Q 005473          474 LQHNGASSKSLLMFGSDGMGSL--------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDAD-----------------  528 (695)
Q Consensus       474 l~~s~s~~~s~l~~~~dg~~~l--------a~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~-----------------  528 (695)
                      ..++++.+.++..|.......+        .+....+.+...++++|+.|+.|++|+......                 
T Consensus        80 ~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~  159 (380)
T 3iz6_a           80 WIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGY  159 (380)
T ss_dssp             CEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSC
T ss_pred             EEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcc
Confidence            4455667777777776443111        111112344557888888888888887542110                 


Q ss_pred             -----------------CCCccccccccCCCceeeeEEEe-----cCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 005473          529 -----------------PRDRVGRSAEVGKGFTFTEFQLI-----PASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE  585 (695)
Q Consensus       529 -----------------~~~~~~~~~d~~~~~~~~~v~~l-----~~H~~~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~  585 (695)
                                       ..+...++|+...+.   .+..+     .+|...|.+++|++ ++++|++|+.|++|+|||++
T Consensus       160 v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~  236 (380)
T 3iz6_a          160 ASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ---RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLR  236 (380)
T ss_dssp             CCCCBCCSSSSSCEEEECTTSCEEEECTTTCC---EEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETT
T ss_pred             eEEEEEecCCCCEEEEECCCCcEEEEEcCCCc---EEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECC
Confidence                             112233455555443   23333     67999999999987 88999999999999999998


Q ss_pred             -CCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC-------CCeEEEEEecCCCeEEE
Q 005473          586 -SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-------TTVMSLDFHPSKEDLLC  657 (695)
Q Consensus       586 -t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~-------~~V~sl~fspdg~~lla  657 (695)
                       ...++..+.+|.+.|++++|+|++.+|++|+.|++|+|||++++. ++..+..+.       ..|++++|+|+|. +++
T Consensus       237 ~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~  314 (380)
T 3iz6_a          237 ITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH-QLQVYNREPDRNDNELPIVTSVAFSISGR-LLF  314 (380)
T ss_dssp             TTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTE-EEEEECCCCSSSCCSSCSCSEEEECSSSS-EEE
T ss_pred             CCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCc-EEEEecccccccccccCceEEEEECCCCC-EEE
Confidence             557888999999999999999999999999999999999999865 466665543       2489999999998 667


Q ss_pred             EEeCCCcEEEEECCCCeEEEEE----ecCCCcEEEEEEeCCC
Q 005473          658 SCDNNSEIRYWSINNGSCAGVF----KNFFESFVSVRVVQPR  695 (695)
Q Consensus       658 Sgs~Dg~IriWDl~tg~~v~~~----~~h~~~VtsVaf~sPd  695 (695)
                      +|+.||.|++||+.+++++..+    .+|.+.|++|+| +|+
T Consensus       315 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~-s~d  355 (380)
T 3iz6_a          315 AGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGL-SSD  355 (380)
T ss_dssp             EECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEE-CSS
T ss_pred             EEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEE-CCC
Confidence            9999999999999999998888    689999999999 986

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.91  E-value=1.7e-22  Score=219.52  Aligned_cols=177  Identities=24%  Similarity=0.415  Sum_probs=152.5

Q ss_pred             CceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEE
Q 005473          481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES  560 (695)
Q Consensus       481 ~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~  560 (695)
                      .+..+.|++++               +++++|+.|++|++|+....                   ..+..+.+|...|.+
T Consensus       125 ~v~~v~~s~dg---------------~~l~s~~~d~~i~iwd~~~~-------------------~~~~~~~~h~~~v~~  170 (393)
T 1erj_A          125 YIRSVCFSPDG---------------KFLATGAEDRLIRIWDIENR-------------------KIVMILQGHEQDIYS  170 (393)
T ss_dssp             BEEEEEECTTS---------------SEEEEEETTSCEEEEETTTT-------------------EEEEEECCCSSCEEE
T ss_pred             eEEEEEECCCC---------------CEEEEEcCCCeEEEEECCCC-------------------cEEEEEccCCCCEEE
Confidence            46678888776               78999999999999976432                   355678899999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEEE---
Q 005473          561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTF---  636 (695)
Q Consensus       561 v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWDl~t~~~~l~~~---  636 (695)
                      ++|+|++++|++|+.|++|+|||++++++...+. +...|.+++|+| ++.+|++|+.|++|++||++++.. +..+   
T Consensus       171 ~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~-~~~~~~~  248 (393)
T 1erj_A          171 LDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL-VERLDSE  248 (393)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCE-EEEEC--
T ss_pred             EEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcE-EEeeccc
Confidence            9999999999999999999999999999887776 567899999999 899999999999999999998664 5544   


Q ss_pred             ----ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC------------CeEEEEEecCCCcEEEEEEeCCC
Q 005473          637 ----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN------------GSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       637 ----~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t------------g~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                          .+|...|++++|+|++. +|++|+.|+.|++||+++            +.+...+.+|.+.|.+++| +|+
T Consensus       249 ~~~~~~h~~~v~~v~~~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~  321 (393)
T 1erj_A          249 NESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT-TQN  321 (393)
T ss_dssp             ----CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEE-CGG
T ss_pred             ccCCCCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEE-CCC
Confidence                67999999999999998 667999999999999975            4567788899999999999 874

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.91  E-value=1.3e-22  Score=213.11  Aligned_cols=190  Identities=21%  Similarity=0.323  Sum_probs=158.2

Q ss_pred             cccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecC
Q 005473          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA  553 (695)
Q Consensus       474 l~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~  553 (695)
                      +...+...+.++.|+++..            ...++++|+.|+.|++|+.....                 ......+.+
T Consensus        34 ~~~~h~~~v~~~~~~~~~~------------~g~~l~~~~~dg~i~iw~~~~~~-----------------~~~~~~~~~   84 (368)
T 3mmy_A           34 VTSSPDDSIGCLSFSPPTL------------PGNFLIAGSWANDVRCWEVQDSG-----------------QTIPKAQQM   84 (368)
T ss_dssp             CSSCCSSCEEEEEECCTTS------------SSEEEEEEETTSEEEEEEECTTS-----------------CEEEEEEEE
T ss_pred             eccCCCCceEEEEEcCCCC------------CceEEEEECCCCcEEEEEcCCCC-----------------ceeEEEecc
Confidence            4455678899999999741            01789999999999999764321                 123366778


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEE--cCCCCEEEEEeCCCeEEEEECCCCCe
Q 005473          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF--SPSLSRLATSSADRTVRVWDTENPDY  631 (695)
Q Consensus       554 H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~--spdg~~LaTgs~DgtIrvWDl~t~~~  631 (695)
                      |...|++++|+|++++|++|+.||.|+|||+++++++. +.+|...|++++|  +|++.+|++++.|+.|++||+++++.
T Consensus        85 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  163 (368)
T 3mmy_A           85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP  163 (368)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC
T ss_pred             ccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE
Confidence            99999999999999999999999999999999988776 5679999999999  88999999999999999999876431


Q ss_pred             --------------------------------------------------------------------------------
Q 005473          632 --------------------------------------------------------------------------------  631 (695)
Q Consensus       632 --------------------------------------------------------------------------------  631 (695)
                                                                                                      
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~  243 (368)
T 3mmy_A          164 MMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH  243 (368)
T ss_dssp             SEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEE
T ss_pred             EEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEE
Confidence                                                                                            


Q ss_pred             ---------eEEEEecCCC------------CeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEE
Q 005473          632 ---------SLRTFTGHST------------TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVR  690 (695)
Q Consensus       632 ---------~l~~~~gh~~------------~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVa  690 (695)
                               .+..+.+|..            .|++++|+|++. +|++|+.||.|++||+++++++..+.+|..+|++|+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  322 (368)
T 3mmy_A          244 YINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG-TLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACC  322 (368)
T ss_dssp             ESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTC-CEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEE
T ss_pred             ecCCCCccccceeeeeeecccccccccccccceEEEEEecCCC-EEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEE
Confidence                     0112234433            699999999987 566999999999999999999999999999999999


Q ss_pred             EeCCC
Q 005473          691 VVQPR  695 (695)
Q Consensus       691 f~sPd  695 (695)
                      | +|+
T Consensus       323 ~-s~~  326 (368)
T 3mmy_A          323 F-NHN  326 (368)
T ss_dssp             E-CTT
T ss_pred             E-CCC
Confidence            9 986

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.91  E-value=8.5e-23  Score=235.11  Aligned_cols=183  Identities=24%  Similarity=0.370  Sum_probs=158.6

Q ss_pred             CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 005473          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (695)
Q Consensus       478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~  557 (695)
                      +...+..+.|+|++.              ..+++|+.|++|++|+...                   .+.+..+.+|.+.
T Consensus       146 h~~~v~~v~f~p~~~--------------~~l~s~s~D~~v~lwd~~~-------------------~~~~~~l~~H~~~  192 (611)
T 1nr0_A          146 QARAMNSVDFKPSRP--------------FRIISGSDDNTVAIFEGPP-------------------FKFKSTFGEHTKF  192 (611)
T ss_dssp             CSSCEEEEEECSSSS--------------CEEEEEETTSCEEEEETTT-------------------BEEEEEECCCSSC
T ss_pred             CCCCceEEEECCCCC--------------eEEEEEeCCCeEEEEECCC-------------------CeEeeeeccccCc
Confidence            445778888888764              4689999999999995421                   2456778999999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec-------ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 005473          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~-------~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~  630 (695)
                      |.+|+|+|+|++|++|+.|++|+|||+.+++++..+.       +|.+.|++++|+|++.+|++++.|++|+|||+++++
T Consensus       193 V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~  272 (611)
T 1nr0_A          193 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK  272 (611)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             eEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCc
Confidence            9999999999999999999999999999999988884       799999999999999999999999999999998754


Q ss_pred             e------------------------------------------eEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEE
Q 005473          631 Y------------------------------------------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW  668 (695)
Q Consensus       631 ~------------------------------------------~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriW  668 (695)
                      .                                          ++..+.+|...|++++|+|+|. +|++|+.|+.|++|
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~-~l~s~s~D~~v~~W  351 (611)
T 1nr0_A          273 VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSW  351 (611)
T ss_dssp             EEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEE
T ss_pred             eeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEE
Confidence            2                                          1234568999999999999998 66799999999999


Q ss_pred             ECCCCeEEEEE-ecCCCcEEEEEEeCCC
Q 005473          669 SINNGSCAGVF-KNFFESFVSVRVVQPR  695 (695)
Q Consensus       669 Dl~tg~~v~~~-~~h~~~VtsVaf~sPd  695 (695)
                      |+.++++...+ .+|...|.+++| +|+
T Consensus       352 d~~~~~~~~~~~~~h~~~v~~~~~-s~~  378 (611)
T 1nr0_A          352 DISTGISNRVFPDVHATMITGIKT-TSK  378 (611)
T ss_dssp             ETTTCCEEECSSCSCSSCEEEEEE-CTT
T ss_pred             ECCCCceeeecccCCcceEEEEEE-CCC
Confidence            99999988877 589999999999 763

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.91  E-value=1.1e-23  Score=231.64  Aligned_cols=184  Identities=11%  Similarity=0.134  Sum_probs=153.4

Q ss_pred             CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 005473          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (695)
Q Consensus       478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~  557 (695)
                      +...++++.|+|...              .+|++|+.|++|++|+...+.                 ...+..+.+|.+.
T Consensus       118 ~~~~V~~l~~~P~~~--------------~~lasGs~dg~i~lWd~~~~~-----------------~~~~~~~~gH~~~  166 (435)
T 4e54_B          118 FDRRATSLAWHPTHP--------------STVAVGSKGGDIMLWNFGIKD-----------------KPTFIKGIGAGGS  166 (435)
T ss_dssp             CSSCEEEEEECSSCT--------------TCEEEEETTSCEEEECSSCCS-----------------CCEEECCCSSSCC
T ss_pred             CCCCEEEEEEeCCCC--------------CEEEEEeCCCEEEEEECCCCC-----------------ceeEEEccCCCCC
Confidence            345688999998654              789999999999999764331                 1233456789999


Q ss_pred             eEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEecc--cCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 005473          558 VESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (695)
Q Consensus       558 V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~--H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~  634 (695)
                      |++|+|+| ++++|++|+.||+|+|||+++.........  +...|.+++|+|++.+|++|+.||+|++||++. + ++.
T Consensus       167 V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~-~~~  244 (435)
T 4e54_B          167 ITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-K-ELW  244 (435)
T ss_dssp             CCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-C-BCC
T ss_pred             EEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-c-eeE
Confidence            99999998 789999999999999999987655444433  345678999999999999999999999999975 3 467


Q ss_pred             EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEE---ecCCCcEEEEEEeCCC
Q 005473          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KNFFESFVSVRVVQPR  695 (695)
Q Consensus       635 ~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~---~~h~~~VtsVaf~sPd  695 (695)
                      .+.+|...|++++|+|+++.+|++|+.|+.|+|||+++++....+   .+|..+|++|+| +|+
T Consensus       245 ~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~-spd  307 (435)
T 4e54_B          245 NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACF-SPD  307 (435)
T ss_dssp             CSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCB-CTT
T ss_pred             EEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeE-CCC
Confidence            888999999999999999989999999999999999987654433   589999999999 986

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.91  E-value=2.9e-22  Score=217.53  Aligned_cols=167  Identities=23%  Similarity=0.350  Sum_probs=143.7

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT  584 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl  584 (695)
                      ..++++|+.|++|++|+...+                   .....+. +...|.+++|+| ++++|++|+.|++|+|||+
T Consensus       177 ~~~l~s~s~d~~v~iwd~~~~-------------------~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~  236 (393)
T 1erj_A          177 GDKLVSGSGDRTVRIWDLRTG-------------------QCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS  236 (393)
T ss_dssp             SSEEEEEETTSEEEEEETTTT-------------------EEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEET
T ss_pred             CCEEEEecCCCcEEEEECCCC-------------------eeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence            378899999999999976432                   1222232 456799999999 8999999999999999999


Q ss_pred             CCCeEEEEe-------cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-----------eeEEEEecCCCCeEEE
Q 005473          585 ESFTVKSTL-------EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-----------YSLRTFTGHSTTVMSL  646 (695)
Q Consensus       585 ~t~~~~~~l-------~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~-----------~~l~~~~gh~~~V~sl  646 (695)
                      ++++++..+       .+|...|++++|+|++.+|++|+.|++|++||+++..           .+...+.+|...|.++
T Consensus       237 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  316 (393)
T 1erj_A          237 ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV  316 (393)
T ss_dssp             TTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEE
T ss_pred             CCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEE
Confidence            999888776       5799999999999999999999999999999997532           3467788999999999


Q ss_pred             EEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       647 ~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      +|+|++. +|++|+.|+.|++||+++++++..+.+|.+.|.+|+| +|
T Consensus       317 ~~~~~~~-~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~-~~  362 (393)
T 1erj_A          317 ATTQNDE-YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV-AN  362 (393)
T ss_dssp             EECGGGC-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE-CS
T ss_pred             EECCCCC-EEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEe-cC
Confidence            9999987 6679999999999999999999999999999999999 75

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.91  E-value=2.3e-22  Score=213.85  Aligned_cols=165  Identities=22%  Similarity=0.407  Sum_probs=138.9

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~  585 (695)
                      ..++++|+.|++|++|+...+                   ..+..+.+|...|.+|+|+|++++|++|+.|++|+|||+.
T Consensus        88 ~~~l~s~s~D~~v~lwd~~~~-------------------~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~  148 (343)
T 2xzm_R           88 NCFAISSSWDKTLRLWDLRTG-------------------TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL  148 (343)
T ss_dssp             TTEEEEEETTSEEEEEETTSS-------------------CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS
T ss_pred             CCEEEEEcCCCcEEEEECCCC-------------------cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc
Confidence            378999999999999976432                   3456788999999999999999999999999999999998


Q ss_pred             CCeEEEEec---ccCCCeEEEEEcCCC----------CEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCC
Q 005473          586 SFTVKSTLE---EHTQWITDVRFSPSL----------SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK  652 (695)
Q Consensus       586 t~~~~~~l~---~H~~~V~~v~~spdg----------~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg  652 (695)
                      .. ....+.   +|...|.+++|+|++          .+|++++.|++|++||..  ...+..+.+|...|.+++|+|+|
T Consensus       149 ~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v~~~~~s~~g  225 (343)
T 2xzm_R          149 GE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNHLSISPNG  225 (343)
T ss_dssp             SC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEEEEECCSSCEEEEEECTTS
T ss_pred             CC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--CceeEEEcCccccceEEEECCCC
Confidence            43 333333   789999999999986          789999999999999954  34577889999999999999999


Q ss_pred             CeEEEEEeCCCcEEEEECCC-CeEEEEEecCCCcEEEEEEeCCC
Q 005473          653 EDLLCSCDNNSEIRYWSINN-GSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       653 ~~llaSgs~Dg~IriWDl~t-g~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      . +|++|+.||.|++||++. ..+...+ .+...|.+|+| +|+
T Consensus       226 ~-~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~-sp~  266 (343)
T 2xzm_R          226 K-YIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAF-NPK  266 (343)
T ss_dssp             S-EEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEE-CSS
T ss_pred             C-EEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEE-CCC
Confidence            8 677999999999999954 4455555 35567999999 985

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.91  E-value=8.7e-24  Score=225.47  Aligned_cols=182  Identities=17%  Similarity=0.192  Sum_probs=148.2

Q ss_pred             CCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCe
Q 005473          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV  558 (695)
Q Consensus       479 s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V  558 (695)
                      ...+..+.|++++               +++++|+.|+.|++|+...+                 .+..+..+.+|...|
T Consensus        11 ~~~v~~~~~s~~g---------------~~l~~~~~d~~i~iw~~~~~-----------------~~~~~~~~~~h~~~v   58 (377)
T 3dwl_C           11 PKPSYEHAFNSQR---------------TEFVTTTATNQVELYEQDGN-----------------GWKHARTFSDHDKIV   58 (377)
T ss_dssp             SSCCSCCEECSSS---------------SEEECCCSSSCBCEEEEETT-----------------EEEECCCBCCCSSCE
T ss_pred             CCcEEEEEECCCC---------------CEEEEecCCCEEEEEEccCC-----------------ceEEEEEEecCCceE
Confidence            3456666677655               78999999999999965322                 124556678999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe--eE
Q 005473          559 ESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SL  633 (695)
Q Consensus       559 ~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~---~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~--~l  633 (695)
                      .+++|+|++++|++|+.|++|+|||+.+++   ....+.+|...|++++|+|++.+|++++.|++|++||++++..  ++
T Consensus        59 ~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  138 (377)
T 3dwl_C           59 TCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVS  138 (377)
T ss_dssp             EEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCC
T ss_pred             EEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceee
Confidence            999999999999999999999999999877   6778889999999999999999999999999999999998653  46


Q ss_pred             EEEec-CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC------------------CCeEEEEEecCCCcEEEEEEeCC
Q 005473          634 RTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN------------------NGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       634 ~~~~g-h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~------------------tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      ..+.+ |...|++++|+|++. +|++|+.|+.|++||++                  .++++..+ +|.+.|++++| +|
T Consensus       139 ~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~-sp  215 (377)
T 3dwl_C          139 KHLKRPLRSTILSLDWHPNNV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGF-SP  215 (377)
T ss_dssp             EEECSSCCSCEEEEEECTTSS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEE-CT
T ss_pred             eEeecccCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEE-CC
Confidence            77777 999999999999987 67799999999999985                  46677788 99999999999 98


Q ss_pred             C
Q 005473          695 R  695 (695)
Q Consensus       695 d  695 (695)
                      +
T Consensus       216 ~  216 (377)
T 3dwl_C          216 S  216 (377)
T ss_dssp             T
T ss_pred             C
Confidence            6

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.91  E-value=1.6e-22  Score=210.97  Aligned_cols=172  Identities=16%  Similarity=0.300  Sum_probs=143.5

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEE
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKKAVLWC  583 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspd--g~~LaSgs~Dg~V~IWD  583 (695)
                      ..++++|+.|++|++|+...+.                 ...+..+.+|...|.+++|+|+  +.+|++|+.|++|+|||
T Consensus        67 g~~l~s~s~D~~v~iWd~~~~~-----------------~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd  129 (297)
T 2pm7_B           67 GTILASCSYDGKVMIWKEENGR-----------------WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVE  129 (297)
T ss_dssp             CSEEEEEETTTEEEEEEBSSSC-----------------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEE
T ss_pred             CCEEEEEcCCCEEEEEEcCCCc-----------------eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEE
Confidence            3789999999999999764321                 1234556789999999999997  89999999999999999


Q ss_pred             CCCCe--EEEEecccCCCeEEEEEcCC-------------CCEEEEEeCCCeEEEEECCCCCe---eEEEEecCCCCeEE
Q 005473          584 TESFT--VKSTLEEHTQWITDVRFSPS-------------LSRLATSSADRTVRVWDTENPDY---SLRTFTGHSTTVMS  645 (695)
Q Consensus       584 l~t~~--~~~~l~~H~~~V~~v~~spd-------------g~~LaTgs~DgtIrvWDl~t~~~---~l~~~~gh~~~V~s  645 (695)
                      +++..  ....+.+|...|.+++|+|+             +.+|++|+.|++|+|||++++..   ++..+.+|...|.+
T Consensus       130 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~  209 (297)
T 2pm7_B          130 FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD  209 (297)
T ss_dssp             BCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE
T ss_pred             ecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEE
Confidence            98753  24577899999999999996             46999999999999999987552   45788999999999


Q ss_pred             EEEecCC--CeEEEEEeCCCcEEEEECCCCe---EEEEE--ecCCCcEEEEEEeCCC
Q 005473          646 LDFHPSK--EDLLCSCDNNSEIRYWSINNGS---CAGVF--KNFFESFVSVRVVQPR  695 (695)
Q Consensus       646 l~fspdg--~~llaSgs~Dg~IriWDl~tg~---~v~~~--~~h~~~VtsVaf~sPd  695 (695)
                      |+|+|++  ..+|++|+.|++|+|||++++.   ....+  ..|...|.+++| +|+
T Consensus       210 v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~  265 (297)
T 2pm7_B          210 VAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW-SLS  265 (297)
T ss_dssp             EEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEE-CSS
T ss_pred             EEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEE-CCC
Confidence            9999996  4588899999999999998743   22333  478899999999 985

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.90  E-value=2.6e-22  Score=212.14  Aligned_cols=186  Identities=16%  Similarity=0.212  Sum_probs=160.9

Q ss_pred             cCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 005473          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (695)
Q Consensus       476 ~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~  555 (695)
                      ..+...+..+.|++++               .++++|+.|+.|++|+...                 .....+..+.+|.
T Consensus         8 ~~h~~~v~~~~~s~~~---------------~~l~~~~~dg~i~iw~~~~-----------------~~~~~~~~~~~h~   55 (379)
T 3jrp_A            8 NAHNELIHDAVLDYYG---------------KRLATCSSDKTIKIFEVEG-----------------ETHKLIDTLTGHE   55 (379)
T ss_dssp             EECCCCEEEEEECSSS---------------SEEEEEETTSCEEEEEEET-----------------TEEEEEEEECCCS
T ss_pred             cCCcccEEEEEEcCCC---------------CEEEEEECCCcEEEEecCC-----------------CcceeeeEecCCC
Confidence            3456788888898876               7899999999999996531                 1335667888999


Q ss_pred             CCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCe--EEEEecccCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCC
Q 005473          556 SKVESCHFSPD--GKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENP  629 (695)
Q Consensus       556 ~~V~~v~fspd--g~~LaSgs~Dg~V~IWDl~t~~--~~~~l~~H~~~V~~v~~spd--g~~LaTgs~DgtIrvWDl~t~  629 (695)
                      ..|++++|+++  +++|++|+.||.|+|||+++++  .+..+.+|...|.+++|+|+  +.+|++++.|+.|++||+++.
T Consensus        56 ~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  135 (379)
T 3jrp_A           56 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN  135 (379)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTT
T ss_pred             CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCC
Confidence            99999999987  9999999999999999999987  77788889999999999999  999999999999999999886


Q ss_pred             C-eeEEEEecCCCCeEEEEEec-------------CCCeEEEEEeCCCcEEEEECCCCe----EEEEEecCCCcEEEEEE
Q 005473          630 D-YSLRTFTGHSTTVMSLDFHP-------------SKEDLLCSCDNNSEIRYWSINNGS----CAGVFKNFFESFVSVRV  691 (695)
Q Consensus       630 ~-~~l~~~~gh~~~V~sl~fsp-------------dg~~llaSgs~Dg~IriWDl~tg~----~v~~~~~h~~~VtsVaf  691 (695)
                      . .....+.+|...|++++|+|             ++. +|++|+.||.|++||++++.    ++..+.+|...|++++|
T Consensus       136 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~  214 (379)
T 3jrp_A          136 GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW  214 (379)
T ss_dssp             SCCCEEEEECCTTCEEEEEECCCC----------CTTC-EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE
T ss_pred             CceeeEEecCCCCceEEEEEcCccccccccccCCCCCC-EEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEE
Confidence            4 23557788999999999999             455 77799999999999998753    56788899999999999


Q ss_pred             eCCC
Q 005473          692 VQPR  695 (695)
Q Consensus       692 ~sPd  695 (695)
                       +|+
T Consensus       215 -sp~  217 (379)
T 3jrp_A          215 -SPT  217 (379)
T ss_dssp             -CCC
T ss_pred             -CCC
Confidence             985

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.90  E-value=6.8e-22  Score=206.42  Aligned_cols=191  Identities=18%  Similarity=0.226  Sum_probs=168.5

Q ss_pred             cCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 005473          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (695)
Q Consensus       476 ~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~  555 (695)
                      ..+...++.+.|+|++.              +++++|+.|++|++|+.....              .....+...+.+|.
T Consensus        35 ~GH~~~V~~v~~sp~~~--------------~~l~S~s~D~~i~vWd~~~~~--------------~~~~~~~~~l~~h~   86 (340)
T 4aow_A           35 KGHNGWVTQIATTPQFP--------------DMILSASRDKTIIMWKLTRDE--------------TNYGIPQRALRGHS   86 (340)
T ss_dssp             CCCSSCEEEEEECTTCT--------------TEEEEEETTSCEEEEEECCSS--------------SCSEEEEEEECCCS
T ss_pred             CCccCCEEEEEEeCCCC--------------CEEEEEcCCCeEEEEECCCCC--------------cccceeeEEEeCCC
Confidence            35677889999998754              789999999999999775432              11234567789999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE
Q 005473          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~  635 (695)
                      ..|.+++|+|++++|++|+.|+.|++|+............+...+..+.+++++.+|++++.|+.+++||+.........
T Consensus        87 ~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~  166 (340)
T 4aow_A           87 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ  166 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred             CCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEE
Confidence            99999999999999999999999999999999999888889999999999999999999999999999999876665566


Q ss_pred             EecCCCCeEEEEEecCCC-eEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          636 FTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       636 ~~gh~~~V~sl~fspdg~-~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ..+|...|.+++|++++. .++++|+.|+.|++||+++++++..+.+|.+.|++|+| +|+
T Consensus       167 ~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~-s~~  226 (340)
T 4aow_A          167 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTV-SPD  226 (340)
T ss_dssp             SSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE-CTT
T ss_pred             eccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEE-CCC
Confidence            778999999999998754 46789999999999999999999999999999999999 985

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.90  E-value=2.2e-23  Score=222.33  Aligned_cols=184  Identities=15%  Similarity=0.109  Sum_probs=149.5

Q ss_pred             CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 005473          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (695)
Q Consensus       478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~  557 (695)
                      +...+..+.|++++               +++++++.|++|++|+...+.                .+.....+.+|...
T Consensus        54 h~~~v~~~~~s~~~---------------~~l~s~s~d~~v~vwd~~~~~----------------~~~~~~~~~~~~~~  102 (377)
T 3dwl_C           54 HDKIVTCVDWAPKS---------------NRIVTCSQDRNAYVYEKRPDG----------------TWKQTLVLLRLNRA  102 (377)
T ss_dssp             CSSCEEEEEECTTT---------------CCEEEEETTSSEEEC----------------------CCCCEEECCCCSSC
T ss_pred             CCceEEEEEEeCCC---------------CEEEEEeCCCeEEEEEcCCCC----------------ceeeeeEecccCCc
Confidence            34556666776654               678999999999999764331                12345667789999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEecc-cCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC----
Q 005473          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENP----  629 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~---~~~~l~~-H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~----  629 (695)
                      |.+++|+|++++|++|+.|+.|+|||+++++   +...+.+ |...|++++|+|++.+|++++.|++|++||++..    
T Consensus       103 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  182 (377)
T 3dwl_C          103 ATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDA  182 (377)
T ss_dssp             EEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-
T ss_pred             eEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCC
Confidence            9999999999999999999999999999877   4677877 9999999999999999999999999999998632    


Q ss_pred             -------------CeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeE----EEEEecCCCcEEEEEEe
Q 005473          630 -------------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVFKNFFESFVSVRVV  692 (695)
Q Consensus       630 -------------~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~----v~~~~~h~~~VtsVaf~  692 (695)
                                   ..++..+ +|.+.|++++|+|++. +|++|+.||.|++||++++++    +..+.+|..+|++++| 
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~-  259 (377)
T 3dwl_C          183 KPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN-ALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLW-  259 (377)
T ss_dssp             CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS-CEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEE-
T ss_pred             Cccccccccccchhhhhhcc-cCCceEEEEEECCCCC-EEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEE-
Confidence                         2245566 8999999999999998 666999999999999999987    8889999999999999 


Q ss_pred             CCC
Q 005473          693 QPR  695 (695)
Q Consensus       693 sPd  695 (695)
                      +|+
T Consensus       260 s~~  262 (377)
T 3dwl_C          260 ANE  262 (377)
T ss_dssp             EET
T ss_pred             cCC
Confidence            875

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.90  E-value=3.6e-22  Score=225.28  Aligned_cols=166  Identities=27%  Similarity=0.466  Sum_probs=148.4

Q ss_pred             CCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005473          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (695)
Q Consensus       504 ~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWD  583 (695)
                      +..+++++++.|+.|++|+..                 +   ..+..+.+|...|++++|+|++++|++++.|++|+|||
T Consensus       395 ~dg~~l~~~~~d~~v~~~~~~-----------------~---~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~  454 (577)
T 2ymu_A          395 PDGQTIASASDDKTVKLWNRN-----------------G---QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN  454 (577)
T ss_dssp             TTSSCEEEEETTSEEEEECTT-----------------C---CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCCCEEEEEeCCCEEEEEeCC-----------------C---CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEE
Confidence            344789999999999999531                 1   24567789999999999999999999999999999999


Q ss_pred             CCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC
Q 005473          584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (695)
Q Consensus       584 l~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg  663 (695)
                      . +++.+..+.+|...|++++|+|++.+|++++.|++|++||.. ++ ++..+.+|...|++|+|+|+++ +|++++.||
T Consensus       455 ~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~-~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~dg  530 (577)
T 2ymu_A          455 R-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ-LLQTLTGHSSSVRGVAFSPDGQ-TIASASDDK  530 (577)
T ss_dssp             T-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-SC-EEEEEECCSSCEEEEEECTTSS-CEEEEETTS
T ss_pred             C-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-CC-EEEEEeCCCCCEEEEEEcCCCC-EEEEEECcC
Confidence            6 567888999999999999999999999999999999999964 34 5889999999999999999998 566999999


Q ss_pred             cEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          664 EIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       664 ~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      .|++||+ +++++.++.+|.+.|++|+| +||
T Consensus       531 ~v~lwd~-~~~~~~~~~~h~~~v~~~~f-s~d  560 (577)
T 2ymu_A          531 TVKLWNR-NGQLLQTLTGHSSSVWGVAF-SPD  560 (577)
T ss_dssp             EEEEECT-TSCEEEEEECCSSCEEEEEE-CTT
T ss_pred             EEEEEeC-CCCEEEEEcCCCCCEEEEEE-cCC
Confidence            9999995 68999999999999999999 986

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.90  E-value=4.5e-22  Score=218.69  Aligned_cols=191  Identities=19%  Similarity=0.310  Sum_probs=163.0

Q ss_pred             CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 005473          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (695)
Q Consensus       478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~  557 (695)
                      +...+..+.|++++.              .++++|+.|+.|++|+......            ..........+.+|...
T Consensus       180 h~~~v~~l~~~~~~~--------------~~l~s~~~dg~i~vwd~~~~~~------------~~~~~~~~~~~~~h~~~  233 (430)
T 2xyi_A          180 HQKEGYGLSWNPNLN--------------GYLLSASDDHTICLWDINATPK------------EHRVIDAKNIFTGHTAV  233 (430)
T ss_dssp             CSSCCCCEEECTTST--------------TEEEEECTTSCEEEEETTSCCB------------GGGEEECSEEECCCSSC
T ss_pred             CCCCeEEEEeCCCCC--------------CeEEEEeCCCeEEEEeCCCCCC------------CCceeccceeecCCCCC
Confidence            445667777777663              4899999999999998755321            11122335667799999


Q ss_pred             eEEEEEcC-CCCEEEEEeCCCcEEEEECCCC---eEEEEecccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCee
Q 005473          558 VESCHFSP-DGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYS  632 (695)
Q Consensus       558 V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~t~---~~~~~l~~H~~~V~~v~~spdg~-~LaTgs~DgtIrvWDl~t~~~~  632 (695)
                      |.+++|+| ++.+|++++.|+.|+|||+++.   +++..+..|...|++++|+|++. +|++|+.||+|++||+++...+
T Consensus       234 v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~  313 (430)
T 2xyi_A          234 VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK  313 (430)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC
T ss_pred             EeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC
Confidence            99999999 6789999999999999999987   57778889999999999999876 7899999999999999986667


Q ss_pred             EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC--------------CeEEEEEecCCCcEEEEEEeCCC
Q 005473          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--------------GSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       633 l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t--------------g~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +..+.+|...|++++|+|+++.+|++|+.|+.|+|||+..              .+++..+.+|...|++++| +|+
T Consensus       314 ~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~p~  389 (430)
T 2xyi_A          314 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW-NPN  389 (430)
T ss_dssp             SEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEE-CSS
T ss_pred             eEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEE-CCC
Confidence            8999999999999999999988899999999999999987              3678888899999999999 985

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.90  E-value=1.9e-22  Score=219.57  Aligned_cols=193  Identities=15%  Similarity=0.281  Sum_probs=156.9

Q ss_pred             CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCC--
Q 005473          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST--  555 (695)
Q Consensus       478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~--  555 (695)
                      ....++++.|++++               .++++|+.|+.|++|+.......        .......+..+..+.+|.  
T Consensus        27 ~~~~V~~v~~s~~g---------------~~la~g~~dg~v~iw~~~~~~~~--------~~~~~~~~~~~~~~~~h~~~   83 (447)
T 3dw8_B           27 EADIISTVEFNHSG---------------ELLATGDKGGRVVIFQQEQENKI--------QSHSRGEYNVYSTFQSHEPE   83 (447)
T ss_dssp             GGGSEEEEEECSSS---------------SEEEEEETTSEEEEEEECC-------------CCCCCCEEEEEEEECCCCE
T ss_pred             ccCcEEEEEECCCC---------------CEEEEEcCCCeEEEEEecCCCCC--------CcccccceeEeccccccccc
Confidence            34678899999877               78999999999999987654210        011122345677888998  


Q ss_pred             ----------CCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCeEE---------------------------------
Q 005473          556 ----------SKVESCHFSPDG--KLLATGGHDKKAVLWCTESFTVK---------------------------------  590 (695)
Q Consensus       556 ----------~~V~~v~fspdg--~~LaSgs~Dg~V~IWDl~t~~~~---------------------------------  590 (695)
                                +.|++++|+|++  .+|++++.|++|+|||+.++...                                 
T Consensus        84 ~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  163 (447)
T 3dw8_B           84 FDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLM  163 (447)
T ss_dssp             EEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEE
T ss_pred             ccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchhee
Confidence                      889999999998  79999999999999999764432                                 


Q ss_pred             ------EE-ecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE-------EEecCCCCeEEEEEecCCCeEE
Q 005473          591 ------ST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR-------TFTGHSTTVMSLDFHPSKEDLL  656 (695)
Q Consensus       591 ------~~-l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~-------~~~gh~~~V~sl~fspdg~~ll  656 (695)
                            .. +.+|...|++++|+|++.+|++| .|++|++||+++...++.       .+.+|...|++++|+|++..+|
T Consensus       164 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  242 (447)
T 3dw8_B          164 VEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTF  242 (447)
T ss_dssp             EEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEE
T ss_pred             eeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEE
Confidence                  12 36899999999999999999998 799999999996554444       2568999999999999985588


Q ss_pred             EEEeCCCcEEEEECCCCeE----EEEEecCCC------------cEEEEEEeCCC
Q 005473          657 CSCDNNSEIRYWSINNGSC----AGVFKNFFE------------SFVSVRVVQPR  695 (695)
Q Consensus       657 aSgs~Dg~IriWDl~tg~~----v~~~~~h~~------------~VtsVaf~sPd  695 (695)
                      ++|+.||.|++||++++++    +..+.+|..            .|++|+| +|+
T Consensus       243 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~  296 (447)
T 3dw8_B          243 VYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKF-SHS  296 (447)
T ss_dssp             EEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEE-CTT
T ss_pred             EEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEE-CCC
Confidence            8999999999999999887    789998886            9999999 985

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.89  E-value=3.2e-22  Score=216.19  Aligned_cols=170  Identities=18%  Similarity=0.224  Sum_probs=145.7

Q ss_pred             CCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005473          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (695)
Q Consensus       504 ~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWD  583 (695)
                      ...+++++|+.|+.|++|+...+                   .....+.+|.+.|++++|+|++++|++|+.|+.|+|||
T Consensus       107 ~~~~~l~~~~~dg~i~iwd~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd  167 (420)
T 3vl1_A          107 LQMRRFILGTTEGDIKVLDSNFN-------------------LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWS  167 (420)
T ss_dssp             SSSCEEEEEETTSCEEEECTTSC-------------------EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cCCCEEEEEECCCCEEEEeCCCc-------------------ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEe
Confidence            34478999999999999965322                   34556679999999999999999999999999999999


Q ss_pred             CCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec---CCCCeEEEE-------------
Q 005473          584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG---HSTTVMSLD-------------  647 (695)
Q Consensus       584 l~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~g---h~~~V~sl~-------------  647 (695)
                      +++++++..+.+|...|++++|+|++.+|++++.|++|++||+++++ ++..+..   |...|.+++             
T Consensus       168 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  246 (420)
T 3vl1_A          168 VKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT-TIHTFNRKENPHDGVNSIALFVGTDRQLHEIS  246 (420)
T ss_dssp             TTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE-EEEEECBTTBTTCCEEEEEEEECCCSSCGGGC
T ss_pred             CCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc-eeEEeecCCCCCCCccEEEEecCCcceeeecc
Confidence            99999999999999999999999999999999999999999999865 4677764   344555555             


Q ss_pred             --------EecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe-cCCCcEEEEEEeCCC
Q 005473          648 --------FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-NFFESFVSVRVVQPR  695 (695)
Q Consensus       648 --------fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~-~h~~~VtsVaf~sPd  695 (695)
                              |+|++. +|++|+.||.|++||+++++.+..+. +|...|++|+| +|+
T Consensus       247 ~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~-~~~  301 (420)
T 3vl1_A          247 TSKKNNLEFGTYGK-YVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTV-DGN  301 (420)
T ss_dssp             CCCCCTTCSSCTTE-EEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEE-CSS
T ss_pred             cCcccceEEcCCCC-EEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEE-eCC
Confidence                    467776 67799999999999999998887776 58899999999 985

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.9e-21  Score=204.31  Aligned_cols=184  Identities=13%  Similarity=0.184  Sum_probs=161.1

Q ss_pred             ccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 005473          475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS  554 (695)
Q Consensus       475 ~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H  554 (695)
                      ...+...+..+.|++++               .++++|+.|+.|++|+...+                   ..+..+.+|
T Consensus        28 l~~h~~~v~~~~~s~~~---------------~~l~~~~~dg~i~vwd~~~~-------------------~~~~~~~~h   73 (369)
T 3zwl_B           28 LTGHERPLTQVKYNKEG---------------DLLFSCSKDSSASVWYSLNG-------------------ERLGTLDGH   73 (369)
T ss_dssp             EECCSSCEEEEEECTTS---------------CEEEEEESSSCEEEEETTTC-------------------CEEEEECCC
T ss_pred             EEEeeceEEEEEEcCCC---------------CEEEEEeCCCEEEEEeCCCc-------------------hhhhhhhhc
Confidence            34466778888888876               68999999999999966433                   356678899


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCC
Q 005473          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENP  629 (695)
Q Consensus       555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~D-----gtIrvWDl~t~  629 (695)
                      ...|.+++|+|++++|++++.||.|+|||+.+++++..+. |...|.+++|+|++.+|++++.+     +.|++||++..
T Consensus        74 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~  152 (369)
T 3zwl_B           74 TGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERD  152 (369)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEEC
T ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCC
Confidence            9999999999999999999999999999999999998887 88999999999999999999999     99999999765


Q ss_pred             Ce----------eEEEEecCCC--CeEEEEEecCCCeEEEEEeCCCcEEEEECCC-CeEEEEEecCCCcEEEEEEeCCC
Q 005473          630 DY----------SLRTFTGHST--TVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       630 ~~----------~l~~~~gh~~--~V~sl~fspdg~~llaSgs~Dg~IriWDl~t-g~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ..          .+..+..|.+  .|.+++|+|++. +|++++.||.|++||+++ ++++..+..|...|++++| +|+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~-~~~  229 (369)
T 3zwl_B          153 SATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK-YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQF-SPD  229 (369)
T ss_dssp             TTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGC-EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEE-CTT
T ss_pred             ccceeecccccceeeeccCCcCccceeEEEEcCCCC-EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEE-CCC
Confidence            32          3455666776  899999999988 666899999999999998 7999999999999999999 985

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.89  E-value=7.9e-22  Score=229.96  Aligned_cols=167  Identities=23%  Similarity=0.384  Sum_probs=145.9

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~  585 (695)
                      .+++++|+.|++|++|+...+                   ..+..+.+|...|.+|+|+|++++|++|+.|++|+|||+.
T Consensus       442 g~~l~sgs~Dg~v~vwd~~~~-------------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~  502 (694)
T 3dm0_A          442 GQFALSGSWDGELRLWDLAAG-------------------VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL  502 (694)
T ss_dssp             SSEEEEEETTSEEEEEETTTT-------------------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             CCEEEEEeCCCcEEEEECCCC-------------------cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECC
Confidence            478999999999999976432                   3456778999999999999999999999999999999987


Q ss_pred             CCeEEEEe---cccCCCeEEEEEcCCC--CEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEe
Q 005473          586 SFTVKSTL---EEHTQWITDVRFSPSL--SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (695)
Q Consensus       586 t~~~~~~l---~~H~~~V~~v~~spdg--~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs  660 (695)
                      ........   .+|...|.|++|+|++  ..|++|+.|++|+|||+++.. ++..+.+|.+.|++++|+|++. +|++|+
T Consensus       503 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~-~~~~~~~h~~~v~~v~~spdg~-~l~sg~  580 (694)
T 3dm0_A          503 GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK-LRSTLAGHTGYVSTVAVSPDGS-LCASGG  580 (694)
T ss_dssp             SCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSS-EEEEEE
T ss_pred             CCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc-EEEEEcCCCCCEEEEEEeCCCC-EEEEEe
Confidence            65443332   4789999999999986  589999999999999999866 4788999999999999999987 677999


Q ss_pred             CCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          661 NNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       661 ~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      .||.|+|||+++++++..+..+ ..|.+++| +|+
T Consensus       581 ~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~-sp~  613 (694)
T 3dm0_A          581 KDGVVLLWDLAEGKKLYSLEAN-SVIHALCF-SPN  613 (694)
T ss_dssp             TTSBCEEEETTTTEEEECCBCS-SCEEEEEE-CSS
T ss_pred             CCCeEEEEECCCCceEEEecCC-CcEEEEEE-cCC
Confidence            9999999999999999888654 68999999 985

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.89  E-value=1.5e-21  Score=206.44  Aligned_cols=184  Identities=18%  Similarity=0.230  Sum_probs=158.1

Q ss_pred             CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 005473          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (695)
Q Consensus       478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~  557 (695)
                      +..++..+.|++++               +++++|+.|+.|++|+....                 .+..+..+.+|...
T Consensus         7 ~~~~i~~~~~s~~~---------------~~l~~~~~d~~v~i~~~~~~-----------------~~~~~~~~~~h~~~   54 (372)
T 1k8k_C            7 LVEPISCHAWNKDR---------------TQIAICPNNHEVHIYEKSGN-----------------KWVQVHELKEHNGQ   54 (372)
T ss_dssp             CSSCCCEEEECTTS---------------SEEEEECSSSEEEEEEEETT-----------------EEEEEEEEECCSSC
T ss_pred             cCCCeEEEEECCCC---------------CEEEEEeCCCEEEEEeCCCC-----------------cEEeeeeecCCCCc
Confidence            55677888888876               78899999999999965322                 23467788899999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE--ecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe---e
Q 005473          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---S  632 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~--l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~---~  632 (695)
                      |.+++|+|++++|++++.|+.|+|||+++++....  +..|...|.+++|+|++.+|++++.|+.|++||++....   .
T Consensus        55 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~  134 (372)
T 1k8k_C           55 VTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC  134 (372)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE
T ss_pred             ccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceee
Confidence            99999999999999999999999999988875544  477999999999999999999999999999999987662   2


Q ss_pred             EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC------------------CCCeEEEEEecCCCcEEEEEEeCC
Q 005473          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI------------------NNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       633 l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl------------------~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      .....+|...|++++|+|++. +|++|+.||.|++||+                  ..++++..+.+|...|++++| +|
T Consensus       135 ~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~  212 (372)
T 1k8k_C          135 KHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF-SA  212 (372)
T ss_dssp             EEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEE-CS
T ss_pred             eeeecccCCCeeEEEEcCCCC-EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEE-CC
Confidence            334467899999999999987 6779999999999995                  468899999999999999999 88


Q ss_pred             C
Q 005473          695 R  695 (695)
Q Consensus       695 d  695 (695)
                      +
T Consensus       213 ~  213 (372)
T 1k8k_C          213 N  213 (372)
T ss_dssp             S
T ss_pred             C
Confidence            5

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.89  E-value=1.4e-21  Score=209.47  Aligned_cols=181  Identities=14%  Similarity=0.145  Sum_probs=153.7

Q ss_pred             CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 005473          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (695)
Q Consensus       478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~  557 (695)
                      +...+..+.|++++.              .++++|+.|+.|++|+.....                 ......+.+|...
T Consensus        72 h~~~v~~~~~~~~~~--------------~~l~s~~~dg~i~iwd~~~~~-----------------~~~~~~~~~h~~~  120 (383)
T 3ei3_B           72 FDRRVTSLEWHPTHP--------------TTVAVGSKGGDIILWDYDVQN-----------------KTSFIQGMGPGDA  120 (383)
T ss_dssp             CSSCEEEEEECSSCT--------------TEEEEEEBTSCEEEEETTSTT-----------------CEEEECCCSTTCB
T ss_pred             CCCCEEEEEECCCCC--------------CEEEEEcCCCeEEEEeCCCcc-----------------cceeeecCCcCCc
Confidence            445788888988764              689999999999999765331                 1222233579999


Q ss_pred             eEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEeccc---CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE
Q 005473          558 VESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEH---TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (695)
Q Consensus       558 V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H---~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l  633 (695)
                      |.+++|+| ++++|++|+.|+.|+|||+++ ..+..+..|   ...|.+++|+|++.+|++|+.|+.|++||++ +. ++
T Consensus       121 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~-~~  197 (383)
T 3ei3_B          121 ITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GH-EI  197 (383)
T ss_dssp             EEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SC-EE
T ss_pred             eeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CC-EE
Confidence            99999999 789999999999999999986 555555444   4889999999999999999999999999995 33 58


Q ss_pred             EEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC----CeEEEEEecCCCcEEEEEEeCC
Q 005473          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       634 ~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t----g~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      ..+.+|...|.+++|+|+++.+|++|+.|+.|++||+++    +.++..+ +|...|++|+| +|
T Consensus       198 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~-s~  260 (383)
T 3ei3_B          198 FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYF-NP  260 (383)
T ss_dssp             EEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEE-CT
T ss_pred             EEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEE-cC
Confidence            889999999999999999987888999999999999998    6777777 79999999999 98

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.89  E-value=3.2e-22  Score=216.68  Aligned_cols=171  Identities=18%  Similarity=0.272  Sum_probs=147.8

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE  585 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~  585 (695)
                      .++++++.|+.|++|+.....               .....+..+.+|.+.|++++|+| ++++|++|+.||+|+|||+.
T Consensus        48 ~~~~~~~~~g~i~v~~~~~~~---------------~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~  112 (402)
T 2aq5_A           48 ALICEASGGGAFLVLPLGKTG---------------RVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP  112 (402)
T ss_dssp             EEEBCCSSSCCEEEEETTCCE---------------ECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECC
T ss_pred             EEEEEEcCCCEEEEEECccCC---------------CCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEcc
Confidence            455678899999999764321               00123345678999999999999 99999999999999999999


Q ss_pred             CC-------eEEEEecccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCeeEEEE--ecCCCCeEEEEEecCCCeE
Q 005473          586 SF-------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTF--TGHSTTVMSLDFHPSKEDL  655 (695)
Q Consensus       586 t~-------~~~~~l~~H~~~V~~v~~spdg-~~LaTgs~DgtIrvWDl~t~~~~l~~~--~gh~~~V~sl~fspdg~~l  655 (695)
                      ++       +++..+.+|...|.+++|+|++ .+|++++.|++|++||+++++ ++..+  .+|...|.+++|+|++. +
T Consensus       113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~  190 (402)
T 2aq5_A          113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-AVLTLGPDVHPDTIYSVDWSRDGA-L  190 (402)
T ss_dssp             TTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-EEEEECTTTCCSCEEEEEECTTSS-C
T ss_pred             CCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-ccEEEecCCCCCceEEEEECCCCC-E
Confidence            87       6788899999999999999997 699999999999999999865 47788  78999999999999988 5


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEE-ecCCCc-EEEEEEeCCC
Q 005473          656 LCSCDNNSEIRYWSINNGSCAGVF-KNFFES-FVSVRVVQPR  695 (695)
Q Consensus       656 laSgs~Dg~IriWDl~tg~~v~~~-~~h~~~-VtsVaf~sPd  695 (695)
                      |++|+.||.|++||+++++++..+ .+|.+. +.+++| +|+
T Consensus       191 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~  231 (402)
T 2aq5_A          191 ICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVF-VSE  231 (402)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEE-CST
T ss_pred             EEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEE-cCC
Confidence            668999999999999999999999 688876 899999 885

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.89  E-value=5.9e-22  Score=214.13  Aligned_cols=168  Identities=11%  Similarity=0.133  Sum_probs=142.6

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      .++++|+.|+.|++|+...+                   ..+..+.+|...|.+++|+|++++|++|+.|++|+|||+++
T Consensus       152 ~~l~s~s~d~~i~iwd~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~  212 (420)
T 3vl1_A          152 EALISSSQDMQLKIWSVKDG-------------------SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT  212 (420)
T ss_dssp             SEEEEEETTSEEEEEETTTC-------------------CCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred             CEEEEEeCCCeEEEEeCCCC-------------------cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC
Confidence            78999999999999976533                   23456778999999999999999999999999999999999


Q ss_pred             CeEEEEecc---cCCCeEEE---------------------EEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCC
Q 005473          587 FTVKSTLEE---HTQWITDV---------------------RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT  642 (695)
Q Consensus       587 ~~~~~~l~~---H~~~V~~v---------------------~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~  642 (695)
                      ++++..+..   |...|.++                     +|+|++.+|++|+.||.|++||++++........+|...
T Consensus       213 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  292 (420)
T 3vl1_A          213 GTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCS  292 (420)
T ss_dssp             TEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSC
T ss_pred             CceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCC
Confidence            999988875   34445554                     457889999999999999999999987655555678899


Q ss_pred             eEEEEEecCCCeEEEEEeCCCcEEEEECCCCe-EEEEEec-CCCcEEEEEEeCC
Q 005473          643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKN-FFESFVSVRVVQP  694 (695)
Q Consensus       643 V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~-~v~~~~~-h~~~VtsVaf~sP  694 (695)
                      |++++|+|++..+|++|+.||.|++||+++++ ++..+.+ |...|+++.| ++
T Consensus       293 v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~  345 (420)
T 3vl1_A          293 CNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AA  345 (420)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ET
T ss_pred             ceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CC
Confidence            99999999998678899999999999999875 4777776 7788888877 43

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2.4e-22  Score=228.41  Aligned_cols=195  Identities=10%  Similarity=0.024  Sum_probs=153.9

Q ss_pred             CCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeE
Q 005473          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE  559 (695)
Q Consensus       480 ~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~  559 (695)
                      ..+..+.|+|++.         ..+...+|++++.|++|++|+...+.......   .     ....+...+.+|...|+
T Consensus       208 ~~V~~v~wsp~~~---------~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~---~-----~~~~p~~~l~~h~~~v~  270 (524)
T 2j04_B          208 GEVWDLKWHEGCH---------APHLVGCLSFVSQEGTINFLEIIDNATDVHVF---K-----MCEKPSLTLSLADSLIT  270 (524)
T ss_dssp             CSEEEEEECSSCC---------CSSSSCEEEEEETTSCEEEEECCCCSSSSSEE---E-----CCCSCSEEECCTTTCEE
T ss_pred             CcEEEEEECCCCC---------CCCCCceEEEEecCCeEEEEEcCCCccccccc---e-----eecCceEEEEcCCCCEE
Confidence            4566777777531         01123789999999999999875442110000   0     00123456789999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEecccCCCeEEE--EEcCCC-CEEEEEeCCCeEEEEECCCCCeeEEE
Q 005473          560 SCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDV--RFSPSL-SRLATSSADRTVRVWDTENPDYSLRT  635 (695)
Q Consensus       560 ~v~fspdg~~LaSgs~Dg~V~IWDl~t~-~~~~~l~~H~~~V~~v--~~spdg-~~LaTgs~DgtIrvWDl~t~~~~l~~  635 (695)
                      ||+|++++ .|++|+.||+|+|||++++ .+...+.+|...|++|  .|+|++ .+|+||+.|++|+|||+++++. +.+
T Consensus       271 sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~-~~~  348 (524)
T 2j04_B          271 TFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT-TKT  348 (524)
T ss_dssp             EEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH-HCE
T ss_pred             EEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc-ccc
Confidence            99999864 8999999999999999876 4556788999999999  567887 8999999999999999997653 556


Q ss_pred             EecCCC--CeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          636 FTGHST--TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       636 ~~gh~~--~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +.+|..  .|.+|+|+|++. .+++++.|++|++||++++.++.++.+|.+.|++|+| +|+
T Consensus       349 ~~~~~~~~~v~~v~fsp~~~-~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~-Sp~  408 (524)
T 2j04_B          349 TVSRFRGSNLVPVVYCPQIY-SYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGV-SRL  408 (524)
T ss_dssp             EEEECSCCSCCCEEEETTTT-EEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEEC-CSS
T ss_pred             cccccccCcccceEeCCCcC-eEEEeCCCCcEEEEECcccccceeeecCCCceEEEEe-CCC
Confidence            667653  589999999988 4668889999999999999999999999999999999 985

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.89  E-value=2e-21  Score=205.52  Aligned_cols=170  Identities=12%  Similarity=0.094  Sum_probs=146.6

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      +++++++.|+.|++|+....                 .......+..|...|.+++|+|++++|++|+.|+.|+|||++.
T Consensus        65 ~~l~~~~~dg~i~vwd~~~~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~  127 (372)
T 1k8k_C           65 NRIVTCGTDRNAYVWTLKGR-----------------TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ  127 (372)
T ss_dssp             TEEEEEETTSCEEEEEEETT-----------------EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEET
T ss_pred             CEEEEEcCCCeEEEEECCCC-----------------eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecC
Confidence            78999999999999965322                 1233444577999999999999999999999999999999987


Q ss_pred             Ce----EEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-----------------CCeeEEEEecCCCCeEE
Q 005473          587 FT----VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-----------------PDYSLRTFTGHSTTVMS  645 (695)
Q Consensus       587 ~~----~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t-----------------~~~~l~~~~gh~~~V~s  645 (695)
                      ..    ......+|...|.+++|+|++.+|++++.|+.|++||++.                 ...++..+.+|...|.+
T Consensus       128 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  207 (372)
T 1k8k_C          128 ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHG  207 (372)
T ss_dssp             TTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEE
T ss_pred             CCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEE
Confidence            76    2333477899999999999999999999999999999641                 23457888899999999


Q ss_pred             EEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       646 l~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ++|+|++. +|++++.|+.|++||+++++++..+..|..+|++++| +|+
T Consensus       208 ~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~-~~~  255 (372)
T 1k8k_C          208 VCFSANGS-RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTF-ITE  255 (372)
T ss_dssp             EEECSSSS-EEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEE-EET
T ss_pred             EEECCCCC-EEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEE-ecC
Confidence            99999987 6779999999999999999999999999999999999 875

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.89  E-value=1.8e-21  Score=210.80  Aligned_cols=174  Identities=18%  Similarity=0.214  Sum_probs=148.0

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTE  585 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg-~~LaSgs~Dg~V~IWDl~  585 (695)
                      .++++|+.|++|++|+...+....            ....++..+.+|...|.+++|+|++ ++|++|+.|+.|+|||++
T Consensus        95 ~~l~s~s~dg~v~vw~~~~~~~~~------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~  162 (402)
T 2aq5_A           95 NVIASGSEDCTVMVWEIPDGGLVL------------PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG  162 (402)
T ss_dssp             TEEEEEETTSEEEEEECCTTCCSS------------CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETT
T ss_pred             CEEEEEeCCCeEEEEEccCCCCcc------------ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECC
Confidence            789999999999999876542110            1113456778999999999999998 699999999999999999


Q ss_pred             CCeEEEEe--cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE-ecCCCC-eEEEEEecCCCeEEEEE--
Q 005473          586 SFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF-TGHSTT-VMSLDFHPSKEDLLCSC--  659 (695)
Q Consensus       586 t~~~~~~l--~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~-~gh~~~-V~sl~fspdg~~llaSg--  659 (695)
                      +++++..+  .+|...|++++|+|++.+|++++.|+.|++||++++.. +..+ .+|.+. +.++.|+|++. +|++|  
T Consensus       163 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~  240 (402)
T 2aq5_A          163 TGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTV-VAEKDRPHEGTRPVHAVFVSEGK-ILTTGFS  240 (402)
T ss_dssp             TTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE-EEEEECSSCSSSCCEEEECSTTE-EEEEEEC
T ss_pred             CCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCce-eeeeccCCCCCcceEEEEcCCCc-EEEEecc
Confidence            99999999  88999999999999999999999999999999998664 6777 788876 89999999976 67787  


Q ss_pred             -eCCCcEEEEECCCCeE-EEEEe-cCCCcEEEEEEeCCC
Q 005473          660 -DNNSEIRYWSINNGSC-AGVFK-NFFESFVSVRVVQPR  695 (695)
Q Consensus       660 -s~Dg~IriWDl~tg~~-v~~~~-~h~~~VtsVaf~sPd  695 (695)
                       +.|+.|++||+++++. +..+. .|...|.+++| +|+
T Consensus       241 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-s~~  278 (402)
T 2aq5_A          241 RMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFF-DPD  278 (402)
T ss_dssp             TTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEE-ETT
T ss_pred             CCCCceEEEEcCccccCCceEEeccCCCceeEEEE-cCC
Confidence             7899999999998764 44444 57788999999 885

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.88  E-value=6.4e-21  Score=198.02  Aligned_cols=183  Identities=20%  Similarity=0.329  Sum_probs=155.2

Q ss_pred             CCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEE--ecCC
Q 005473          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL--IPAS  554 (695)
Q Consensus       477 s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~--l~~H  554 (695)
                      .+...+..+.|++++               +++++++ |+.|++|+......                ...+..  ..+|
T Consensus        49 ~h~~~v~~~~~~~~~---------------~~l~~~~-dg~i~iw~~~~~~~----------------~~~~~~~~~~~~   96 (337)
T 1gxr_A           49 NHGEVVCAVTISNPT---------------RHVYTGG-KGCVKVWDISHPGN----------------KSPVSQLDCLNR   96 (337)
T ss_dssp             CCSSCCCEEEECSSS---------------SEEEEEC-BSEEEEEETTSTTC----------------CSCSEEEECSCT
T ss_pred             cCCCceEEEEEecCC---------------cEEEEcC-CCeEEEEECCCCCc----------------eeeeecccccCC
Confidence            455677777777766               6788888 99999997754321                011222  2378


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 005473          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (695)
Q Consensus       555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~--~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~  632 (695)
                      ...|.+++|+|++++|++++.|+.|++||+++++  ....+.+|...|.+++|+|++.+|++++.|+.|++||+++++ +
T Consensus        97 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-~  175 (337)
T 1gxr_A           97 DNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-L  175 (337)
T ss_dssp             TSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-E
T ss_pred             CCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc-e
Confidence            8999999999999999999999999999999877  667788899999999999999999999999999999999865 4


Q ss_pred             EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       633 l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +..+.+|...|.+++|+|++. +|++++.||.|++||+++++++..+. |...|.+++| +|+
T Consensus       176 ~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~-s~~  235 (337)
T 1gxr_A          176 VRQFQGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGY-CPT  235 (337)
T ss_dssp             EEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEE-CTT
T ss_pred             eeeeecccCceEEEEECCCCC-EEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEE-CCC
Confidence            888899999999999999987 66689999999999999999988875 7788999999 885

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.88  E-value=2.6e-22  Score=211.42  Aligned_cols=172  Identities=20%  Similarity=0.352  Sum_probs=143.0

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEE
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKKAVLWC  583 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspd--g~~LaSgs~Dg~V~IWD  583 (695)
                      ..++++|+.|++|++|+...+                 .+..+..+.+|...|.+|+|+|+  +.+|++|+.|++|+|||
T Consensus        71 ~~~l~s~s~D~~v~iWd~~~~-----------------~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd  133 (316)
T 3bg1_A           71 GNILASCSYDRKVIIWREENG-----------------TWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLT  133 (316)
T ss_dssp             SSCEEEEETTSCEEEECCSSS-----------------CCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEE
T ss_pred             CCEEEEEECCCEEEEEECCCC-----------------cceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEe
Confidence            478999999999999965422                 11345567899999999999998  78999999999999999


Q ss_pred             CCCCe---EEEEecccCCCeEEEEEcCC-----------------CCEEEEEeCCCeEEEEECCCCC--eeEEEEecCCC
Q 005473          584 TESFT---VKSTLEEHTQWITDVRFSPS-----------------LSRLATSSADRTVRVWDTENPD--YSLRTFTGHST  641 (695)
Q Consensus       584 l~t~~---~~~~l~~H~~~V~~v~~spd-----------------g~~LaTgs~DgtIrvWDl~t~~--~~l~~~~gh~~  641 (695)
                      +++..   ....+.+|...|.+++|+|+                 +.+|++|+.|++|++||++...  .++..+.+|..
T Consensus       134 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~  213 (316)
T 3bg1_A          134 YTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD  213 (316)
T ss_dssp             ECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSS
T ss_pred             cCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCC
Confidence            98753   23456789999999999997                 4689999999999999997543  35678899999


Q ss_pred             CeEEEEEecCC---CeEEEEEeCCCcEEEEECCCC---e-EEEEEecCCCcEEEEEEeCCC
Q 005473          642 TVMSLDFHPSK---EDLLCSCDNNSEIRYWSINNG---S-CAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       642 ~V~sl~fspdg---~~llaSgs~Dg~IriWDl~tg---~-~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      .|.+++|+|++   ..+|++|+.|++|+|||+++.   . ....+..|.+.|.+|+| +|+
T Consensus       214 ~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~-sp~  273 (316)
T 3bg1_A          214 WVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSW-SIT  273 (316)
T ss_dssp             CEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEE-CTT
T ss_pred             ceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEE-cCC
Confidence            99999999986   247889999999999999762   1 23456678999999999 986

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.88  E-value=1.1e-21  Score=215.46  Aligned_cols=194  Identities=16%  Similarity=0.253  Sum_probs=160.5

Q ss_pred             CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 005473          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (695)
Q Consensus       478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~  557 (695)
                      +...+..+.|++++.              .++++++.|+.|++|+.........         .......+..+.+|...
T Consensus       127 h~~~v~~l~~~p~~~--------------~~lat~~~dg~V~vwd~~~~~~~~~---------~~~~~~~~~~~~~h~~~  183 (430)
T 2xyi_A          127 HEGEVNRARYMPQNA--------------CVIATKTPSSDVLVFDYTKHPSKPE---------PSGECQPDLRLRGHQKE  183 (430)
T ss_dssp             ESSCCSEEEEETTEE--------------EEEEEECSSSCEEEEEGGGSCSSCC---------TTCCCCCSEEEECCSSC
T ss_pred             CCCcEEEEEECCCCC--------------cEEEEECCCCcEEEEECCCcccccC---------ccccCCCcEEecCCCCC
Confidence            344566666666432              7899999999999997754211100         01123456777899999


Q ss_pred             eEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeE-------EEEecccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCC
Q 005473          558 VESCHFSPDGK-LLATGGHDKKAVLWCTESFTV-------KSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN  628 (695)
Q Consensus       558 V~~v~fspdg~-~LaSgs~Dg~V~IWDl~t~~~-------~~~l~~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWDl~t  628 (695)
                      |++|+|+|++. +|++|+.||.|+|||+.++..       ...+.+|...|.+++|+| ++.+|++++.|+.|++||+++
T Consensus       184 v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~  263 (430)
T 2xyi_A          184 GYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRN  263 (430)
T ss_dssp             CCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred             eEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence            99999999998 999999999999999987322       456778999999999999 678999999999999999998


Q ss_pred             CC--eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-CeEEEEEecCCCcEEEEEEeCCC
Q 005473          629 PD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       629 ~~--~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t-g~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ..  .++..+..|...|++++|+|++..+|++|+.||.|++||+++ +.++..+.+|...|++|+| +|+
T Consensus       264 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~-sp~  332 (430)
T 2xyi_A          264 NNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW-SPH  332 (430)
T ss_dssp             SCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEE-CSS
T ss_pred             CCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEE-CCC
Confidence            63  457788899999999999999998899999999999999998 6789999999999999999 985

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.88  E-value=2e-21  Score=209.55  Aligned_cols=178  Identities=17%  Similarity=0.181  Sum_probs=144.4

Q ss_pred             CceEEEEecCCCccccccCCccCCCCc-EEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeE
Q 005473          481 SKSLLMFGSDGMGSLTSAPNQLTDMDR-FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE  559 (695)
Q Consensus       481 ~~s~l~~~~dg~~~la~s~~~l~~~~~-~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~  559 (695)
                      ...++.|+||+.              . .+++++.|++|++|+....                   .++..+ .|.+.|.
T Consensus       135 ~~~~v~fSpDg~--------------~la~as~~~d~~i~iwd~~~~-------------------~~~~~~-~~~~~V~  180 (365)
T 4h5i_A          135 YTKLVYISREGT--------------VAAIASSKVPAIMRIIDPSDL-------------------TEKFEI-ETRGEVK  180 (365)
T ss_dssp             CEEEEEECTTSS--------------CEEEEESCSSCEEEEEETTTT-------------------EEEEEE-ECSSCCC
T ss_pred             CEEEEEEcCCCC--------------EEEEEECCCCCEEEEeECCCC-------------------cEEEEe-CCCCceE
Confidence            356778888874              2 2456778999999976432                   233444 3677899


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE--EecccCCCeEEEEEcCCCCEEEEEeCCC----eEEEEECCCCCe--
Q 005473          560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSADR----TVRVWDTENPDY--  631 (695)
Q Consensus       560 ~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~--~l~~H~~~V~~v~~spdg~~LaTgs~Dg----tIrvWDl~t~~~--  631 (695)
                      +|+|+|||++|++++.|+ +++|+..++..+.  ...+|...|.+++|+|++.++++++.|+    ++++||+.....  
T Consensus       181 ~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~  259 (365)
T 4h5i_A          181 DLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSV  259 (365)
T ss_dssp             EEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEE
T ss_pred             EEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecc
Confidence            999999999999998555 6667666666553  3467899999999999999999998887    689999876543  


Q ss_pred             -eEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEE-ecCCCcEEEEEEeCCC
Q 005473          632 -SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KNFFESFVSVRVVQPR  695 (695)
Q Consensus       632 -~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~-~~h~~~VtsVaf~sPd  695 (695)
                       ....+.+|...|++++|+|+|. +||+|+.|++|+|||+++++++..+ .+|..+|++|+| +||
T Consensus       260 ~~~~~~~~~~~~V~~~~~Spdg~-~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~f-Spd  323 (365)
T 4h5i_A          260 LRSKQVTNRFKGITSMDVDMKGE-LAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTI-SPD  323 (365)
T ss_dssp             EEEEEEESSCSCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEE-CTT
T ss_pred             eeeeeecCCCCCeEeEEECCCCC-ceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEE-CCC
Confidence             2356788999999999999998 7789999999999999999999986 699999999999 996

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.88  E-value=5.7e-21  Score=207.25  Aligned_cols=166  Identities=17%  Similarity=0.294  Sum_probs=148.4

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~  585 (695)
                      ..++++|+.|+.|++|+...+                   ..+..+.+|...|.+++|  ++++|++|+.||.|++||++
T Consensus       146 ~~~l~~~~~dg~i~iwd~~~~-------------------~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~  204 (401)
T 4aez_A          146 GSFLSVGLGNGLVDIYDVESQ-------------------TKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVR  204 (401)
T ss_dssp             SSEEEEEETTSCEEEEETTTC-------------------CEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT
T ss_pred             CCEEEEECCCCeEEEEECcCC-------------------eEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecc
Confidence            378999999999999976432                   355677899999999999  56799999999999999998


Q ss_pred             -CCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEe--CC
Q 005473          586 -SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NN  662 (695)
Q Consensus       586 -t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs--~D  662 (695)
                       ....+..+.+|.+.|.+++|+|++.+|++|+.|+.|++||++++. ++..+.+|...|.+++|+|++..++++|+  .|
T Consensus       205 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d  283 (401)
T 4aez_A          205 IANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI-PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMD  283 (401)
T ss_dssp             SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS-EEEEECCCSSCCCEEEECTTSTTEEEEECCTTT
T ss_pred             cCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC-ccEEecCCcceEEEEEECCCCCCEEEEecCCCC
Confidence             567788899999999999999999999999999999999999865 47888899999999999999988998876  79


Q ss_pred             CcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          663 SEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       663 g~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +.|++||+++++++..+. |...|++++| +|+
T Consensus       284 ~~i~i~d~~~~~~~~~~~-~~~~v~~~~~-s~~  314 (401)
T 4aez_A          284 KQIHFWNAATGARVNTVD-AGSQVTSLIW-SPH  314 (401)
T ss_dssp             CEEEEEETTTCCEEEEEE-CSSCEEEEEE-CSS
T ss_pred             CEEEEEECCCCCEEEEEe-CCCcEEEEEE-CCC
Confidence            999999999999999986 5578999999 985

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.88  E-value=1.5e-21  Score=205.33  Aligned_cols=184  Identities=10%  Similarity=0.171  Sum_probs=152.5

Q ss_pred             CCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeE
Q 005473          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE  559 (695)
Q Consensus       480 ~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~  559 (695)
                      ..+..+.|++++.           ....++++|+.|+.|++|+....                   ..+..+.+|...|.
T Consensus        70 ~~v~~~~~~~~~~-----------~~~~~l~~~~~dg~i~v~d~~~~-------------------~~~~~~~~~~~~i~  119 (366)
T 3k26_A           70 ENFYTCAWTYDSN-----------TSHPLLAVAGSRGIIRIINPITM-------------------QCIKHYVGHGNAIN  119 (366)
T ss_dssp             CCEEEEEEEECTT-----------TCCEEEEEEETTCEEEEECTTTC-------------------CEEEEEESCCSCEE
T ss_pred             CcEEEEEeccCCC-----------CCCCEEEEecCCCEEEEEEchhc-------------------eEeeeecCCCCcEE
Confidence            4456666666542           11368999999999999965332                   34566789999999


Q ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEe---cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-----
Q 005473          560 SCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTL---EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-----  630 (695)
Q Consensus       560 ~v~fsp-dg~~LaSgs~Dg~V~IWDl~t~~~~~~l---~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~-----  630 (695)
                      +++|+| ++++|++|+.||.|+|||+++++.+..+   .+|...|.+++|+|++.+|++++.|+.|++||++++.     
T Consensus       120 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  199 (366)
T 3k26_A          120 ELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI  199 (366)
T ss_dssp             EEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHH
T ss_pred             EEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCcccccc
Confidence            999999 9999999999999999999999999888   7899999999999999999999999999999987431     


Q ss_pred             ----------------------------------------------------------------------------eeEE
Q 005473          631 ----------------------------------------------------------------------------YSLR  634 (695)
Q Consensus       631 ----------------------------------------------------------------------------~~l~  634 (695)
                                                                                                  .++.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  279 (366)
T 3k26_A          200 KESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILG  279 (366)
T ss_dssp             HHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEE
T ss_pred             ceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheec
Confidence                                                                                        1134


Q ss_pred             EEecCCCCeEEEEEecC--CCeEEEEEeCCCcEEEEECCCCe----EEEEEecC--CCcEEEEEEeCCC
Q 005473          635 TFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGS----CAGVFKNF--FESFVSVRVVQPR  695 (695)
Q Consensus       635 ~~~gh~~~V~sl~fspd--g~~llaSgs~Dg~IriWDl~tg~----~v~~~~~h--~~~VtsVaf~sPd  695 (695)
                      .+.+|...|++++|+|+  +. +|++|+.||.|++||+.+++    .+..+.+|  ...|++|+| +|+
T Consensus       280 ~~~~~~~~v~~~~~s~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~  346 (366)
T 3k26_A          280 RFDYSQCDIWYMRFSMDFWQK-MLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSF-SRD  346 (366)
T ss_dssp             EEECSSCCSSCCCCEECTTSS-EEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEE-CTT
T ss_pred             cccccCCcEEEEEEcCCCCCc-EEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEe-CCC
Confidence            45567778889999999  77 77799999999999999875    44577777  799999999 985

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.88  E-value=4.5e-21  Score=205.28  Aligned_cols=177  Identities=20%  Similarity=0.274  Sum_probs=149.6

Q ss_pred             cE-EEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEe-------cCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 005473          507 RF-VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-------PASTSKVESCHFSPDGKLLATGGHDKK  578 (695)
Q Consensus       507 ~~-lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l-------~~H~~~V~~v~fspdg~~LaSgs~Dg~  578 (695)
                      .+ +++++.|+.|++|+........        ......+.+...+       ..|...|.+++|+|++ +|++|+.|+.
T Consensus       138 ~~~l~~~~~dg~i~iwd~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~  208 (397)
T 1sq9_A          138 SHRLVATDVKGTTYIWKFHPFADES--------NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGT  208 (397)
T ss_dssp             CEEEEEEETTSCEEEEEEESSSSHH--------HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSE
T ss_pred             ceEEEEEeCCCcEEEEeCCcccccc--------ccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCc
Confidence            67 8999999999999775410000        0000111222233       4588999999999999 9999999999


Q ss_pred             EEEEECCCCeEEEEecc---c---CCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCCeeEEEEec-----------
Q 005473          579 AVLWCTESFTVKSTLEE---H---TQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTG-----------  638 (695)
Q Consensus       579 V~IWDl~t~~~~~~l~~---H---~~~V~~v~~spdg~~LaTgs~D---gtIrvWDl~t~~~~l~~~~g-----------  638 (695)
                      |+|||+++++++..+..   |   ...|.+++|+|++.+|++++.|   +.|++||+++++ ++..+.+           
T Consensus       209 i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~  287 (397)
T 1sq9_A          209 VQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE-RIGSLSVPTHSSQASLGE  287 (397)
T ss_dssp             EEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC-EEEEECBC--------CC
T ss_pred             EEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc-ccceeccCcccccccccc
Confidence            99999999999999998   9   9999999999999999999999   999999999876 4788888           


Q ss_pred             --CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe------cC---------------CCcEEEEEEeCCC
Q 005473          639 --HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------NF---------------FESFVSVRVVQPR  695 (695)
Q Consensus       639 --h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~------~h---------------~~~VtsVaf~sPd  695 (695)
                        |...|.+++|+|++. +|++|+.||.|+|||+++++++..+.      +|               ...|++|+| +|+
T Consensus       288 ~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~-~~~  365 (397)
T 1sq9_A          288 FAHSSWVMSLSFNDSGE-TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKF-LKK  365 (397)
T ss_dssp             BSBSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEE-ECT
T ss_pred             cccCCcEEEEEECCCCC-EEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEe-ccc
Confidence              999999999999988 67799999999999999999999999      88               999999999 885

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.1e-21  Score=211.15  Aligned_cols=177  Identities=18%  Similarity=0.300  Sum_probs=150.8

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTE  585 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspd-g~~LaSgs~Dg~V~IWDl~  585 (695)
                      .++++++.|+.|++|+.........          ......+..+.+|...|.+++|+|+ +.+|++++.|+.|+|||++
T Consensus       127 ~~l~s~~~dg~v~iwd~~~~~~~~~----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~  196 (416)
T 2pm9_A          127 NVLASGGNNGEIFIWDMNKCTESPS----------NYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK  196 (416)
T ss_dssp             TBEEEECSSSCEEBCBTTTTSSCTT----------TCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETT
T ss_pred             CEEEEEcCCCeEEEEECCCCccccc----------cccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC
Confidence            7899999999999998755421000          0001111234678999999999999 7899999999999999999


Q ss_pred             CCeEEEEeccc------CCCeEEEEEcCCC-CEEEEEeCCC---eEEEEECCCCCeeEEEEe-cCCCCeEEEEEec-CCC
Q 005473          586 SFTVKSTLEEH------TQWITDVRFSPSL-SRLATSSADR---TVRVWDTENPDYSLRTFT-GHSTTVMSLDFHP-SKE  653 (695)
Q Consensus       586 t~~~~~~l~~H------~~~V~~v~~spdg-~~LaTgs~Dg---tIrvWDl~t~~~~l~~~~-gh~~~V~sl~fsp-dg~  653 (695)
                      +++++..+..|      ...|.+++|+|++ .+|++++.|+   .|++||++++..++..+. +|...|++++|+| ++.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  276 (416)
T 2pm9_A          197 AKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEH  276 (416)
T ss_dssp             TTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSS
T ss_pred             CCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCC
Confidence            99999988876      7899999999986 6899999998   999999998766678888 9999999999999 655


Q ss_pred             eEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          654 DLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       654 ~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                       +|++|+.|+.|++||+++++++..+.+|...|++++| +|+
T Consensus       277 -~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~-s~~  316 (416)
T 2pm9_A          277 -LLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKF-APE  316 (416)
T ss_dssp             -CEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEE-CTT
T ss_pred             -eEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEE-CCC
Confidence             7779999999999999999999999999999999999 985

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.88  E-value=3.4e-21  Score=206.43  Aligned_cols=145  Identities=10%  Similarity=0.157  Sum_probs=134.2

Q ss_pred             eEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 005473          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (695)
Q Consensus       547 ~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl  626 (695)
                      .+..+.+|...|.+++|+|++++|++++.|+.|+|||+++++++..+.+|...|.+++|+|++ +|++++.|+.|++||+
T Consensus       239 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~  317 (425)
T 1r5m_A          239 PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSL  317 (425)
T ss_dssp             CSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEET
T ss_pred             eeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEEC
Confidence            445677899999999999999999999999999999999999999999999999999999998 9999999999999999


Q ss_pred             CCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe--------------------EEEEEecCCC--
Q 005473          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--------------------CAGVFKNFFE--  684 (695)
Q Consensus       627 ~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~--------------------~v~~~~~h~~--  684 (695)
                      +++. ++..+..|...|.+++|+|++. +|++|+.||.|++||+++++                    ++..+.+|..  
T Consensus       318 ~~~~-~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (425)
T 1r5m_A          318 KQNT-LLALSIVDGVPIFAGRISQDGQ-KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDND  395 (425)
T ss_dssp             TTTE-EEEEEECTTCCEEEEEECTTSS-EEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCC
T ss_pred             CCCc-EeEecccCCccEEEEEEcCCCC-EEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCC
Confidence            9865 5888889999999999999987 67789999999999999888                    8999999976  


Q ss_pred             cEEEEEEeCCC
Q 005473          685 SFVSVRVVQPR  695 (695)
Q Consensus       685 ~VtsVaf~sPd  695 (695)
                      .|++++| +|+
T Consensus       396 ~v~~~~~-s~~  405 (425)
T 1r5m_A          396 YIFDLSW-NCA  405 (425)
T ss_dssp             CEEEEEE-CTT
T ss_pred             ceEEEEc-cCC
Confidence            9999999 985

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.88  E-value=8.9e-21  Score=200.30  Aligned_cols=172  Identities=17%  Similarity=0.292  Sum_probs=145.4

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEE
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKKAVLWC  583 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspd--g~~LaSgs~Dg~V~IWD  583 (695)
                      ..++++|+.|+.|++|+...+                 ....+..+.+|...|.+++|+|+  +++|++++.|+.|+|||
T Consensus        69 ~~~l~s~~~dg~v~iwd~~~~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d  131 (379)
T 3jrp_A           69 GTILASCSYDGKVLIWKEENG-----------------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE  131 (379)
T ss_dssp             CSEEEEEETTSCEEEEEEETT-----------------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEE
T ss_pred             CCEEEEeccCCEEEEEEcCCC-----------------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEe
Confidence            378999999999999965332                 23466777889999999999999  99999999999999999


Q ss_pred             CCCCe--EEEEecccCCCeEEEEEcC-------------CCCEEEEEeCCCeEEEEECCCCC---eeEEEEecCCCCeEE
Q 005473          584 TESFT--VKSTLEEHTQWITDVRFSP-------------SLSRLATSSADRTVRVWDTENPD---YSLRTFTGHSTTVMS  645 (695)
Q Consensus       584 l~t~~--~~~~l~~H~~~V~~v~~sp-------------dg~~LaTgs~DgtIrvWDl~t~~---~~l~~~~gh~~~V~s  645 (695)
                      +++..  ....+.+|...|.+++|+|             ++.+|++++.|+.|++||++++.   .++..+.+|...|.+
T Consensus       132 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~  211 (379)
T 3jrp_A          132 FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD  211 (379)
T ss_dssp             CCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE
T ss_pred             cCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeE
Confidence            98873  4456788999999999999             68999999999999999998764   245678899999999


Q ss_pred             EEEecCC--CeEEEEEeCCCcEEEEECCCCe---EEEE--EecCCCcEEEEEEeCCC
Q 005473          646 LDFHPSK--EDLLCSCDNNSEIRYWSINNGS---CAGV--FKNFFESFVSVRVVQPR  695 (695)
Q Consensus       646 l~fspdg--~~llaSgs~Dg~IriWDl~tg~---~v~~--~~~h~~~VtsVaf~sPd  695 (695)
                      ++|+|++  ..+|++|+.||.|+|||++++.   ....  ...|...|++++| +|+
T Consensus       212 ~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~  267 (379)
T 3jrp_A          212 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW-SLS  267 (379)
T ss_dssp             EEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEE-CSS
T ss_pred             EEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEE-cCC
Confidence            9999994  4578899999999999999864   2222  2358899999999 986

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.88  E-value=9.5e-21  Score=213.62  Aligned_cols=166  Identities=27%  Similarity=0.475  Sum_probs=148.4

Q ss_pred             CCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005473          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (695)
Q Consensus       504 ~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWD  583 (695)
                      +...++++|+.|+.|++|+...                    ..+..+.+|...|.+++|+|++++|++++.|+.|+|||
T Consensus       354 ~~g~~l~~~~~dg~v~~~~~~~--------------------~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~  413 (577)
T 2ymu_A          354 PDGQTIASASDDKTVKLWNRNG--------------------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN  413 (577)
T ss_dssp             TTSSEEEEEETTSEEEEEETTC--------------------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CCCCEEEEEeCCCEEEEEcCCC--------------------CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            3447899999999999995311                    34566789999999999999999999999999999999


Q ss_pred             CCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC
Q 005473          584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (695)
Q Consensus       584 l~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg  663 (695)
                      . +++.+..+.+|...|++++|+|++.+|++++.|++|++||+.. + ++..+.+|...|++++|+|+++ +|++++.|+
T Consensus       414 ~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~-~~~~~~~~~~~v~~~~~spd~~-~las~~~d~  489 (577)
T 2ymu_A          414 R-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-Q-LLQTLTGHSSSVRGVAFSPDGQ-TIASASDDK  489 (577)
T ss_dssp             T-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-C-EEEEEECCSSCEEEEEECTTSC-EEEEEETTS
T ss_pred             C-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-C-EEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCC
Confidence            6 5678889999999999999999999999999999999999753 3 5788999999999999999988 677999999


Q ss_pred             cEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          664 EIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       664 ~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      .|++||. +++++..+.+|...|++|+| +|+
T Consensus       490 ~i~iw~~-~~~~~~~~~~h~~~v~~l~~-s~d  519 (577)
T 2ymu_A          490 TVKLWNR-NGQLLQTLTGHSSSVRGVAF-SPD  519 (577)
T ss_dssp             EEEEEET-TSCEEEEEECCSSCEEEEEE-CTT
T ss_pred             EEEEEcC-CCCEEEEEeCCCCCEEEEEE-cCC
Confidence            9999995 68999999999999999999 986

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.87  E-value=1.1e-21  Score=213.55  Aligned_cols=175  Identities=11%  Similarity=0.096  Sum_probs=137.2

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC--------CCCEEEEEeCCC
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--------DGKLLATGGHDK  577 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fsp--------dg~~LaSgs~Dg  577 (695)
                      ..++++++.|++|++|+...+.              ......+..+.+|.+.|++|+|+|        |+++||+|+.|+
T Consensus       101 ~~~las~~~d~~v~lw~~~~~~--------------~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~  166 (393)
T 4gq1_A          101 SLFLACVCQDNTVRLIITKNET--------------IITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC  166 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEETTE--------------EEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred             CCEEEEEeCCCcEEEEECCCCc--------------cceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence            4689999999999999764331              112234456789999999999998        889999999999


Q ss_pred             cEEEEECCCCeEEEEecccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCeeE-----------------------
Q 005473          578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSL-----------------------  633 (695)
Q Consensus       578 ~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg-~~LaTgs~DgtIrvWDl~t~~~~l-----------------------  633 (695)
                      +|+|||++++.++..+.+|...|.+++|+|++ .+|++|+.|++|++||++++....                       
T Consensus       167 tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~  246 (393)
T 4gq1_A          167 TLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN  246 (393)
T ss_dssp             EEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred             eEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence            99999999988888888999999999999986 479999999999999998654211                       


Q ss_pred             -EEEecCCCCeEEEEEe-cC------------------------------------------------------------
Q 005473          634 -RTFTGHSTTVMSLDFH-PS------------------------------------------------------------  651 (695)
Q Consensus       634 -~~~~gh~~~V~sl~fs-pd------------------------------------------------------------  651 (695)
                       ....+|...|.++.|+ |+                                                            
T Consensus       247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (393)
T 4gq1_A          247 TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPR  326 (393)
T ss_dssp             -----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred             eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccC
Confidence             0112344444444443 22                                                            


Q ss_pred             -CCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          652 -KEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       652 -g~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                       +..++++|+.||.|++||+.+++++..+.+|..+|++|+| |||
T Consensus       327 ~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svaf-spd  370 (393)
T 4gq1_A          327 YMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCW-HQD  370 (393)
T ss_dssp             CTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEE-CTT
T ss_pred             CCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEE-cCC
Confidence             2335667888999999999999888888899999999999 996

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.87  E-value=1.6e-20  Score=201.21  Aligned_cols=177  Identities=20%  Similarity=0.334  Sum_probs=154.4

Q ss_pred             CCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeE
Q 005473          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE  559 (695)
Q Consensus       480 ~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~  559 (695)
                      ..+..+.|++++               .++++|+.|+.|++|+. .                +   ..+..+.+|...|.
T Consensus       109 ~~v~~~~~s~~~---------------~~l~~~~~dg~i~i~~~-~----------------~---~~~~~~~~~~~~v~  153 (425)
T 1r5m_A          109 NQVTCLAWSHDG---------------NSIVTGVENGELRLWNK-T----------------G---ALLNVLNFHRAPIV  153 (425)
T ss_dssp             BCEEEEEECTTS---------------SEEEEEETTSCEEEEET-T----------------S---CEEEEECCCCSCEE
T ss_pred             CceEEEEEcCCC---------------CEEEEEeCCCeEEEEeC-C----------------C---CeeeeccCCCccEE
Confidence            366777777755               78899999999999952 1                1   34566788999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE------------------------------------------------
Q 005473          560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKS------------------------------------------------  591 (695)
Q Consensus       560 ~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~------------------------------------------------  591 (695)
                      +++|+|++++|++++.|+.|++||+.+++.+.                                                
T Consensus       154 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d  233 (425)
T 1r5m_A          154 SVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQ  233 (425)
T ss_dssp             EEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEE
T ss_pred             EEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEE
Confidence            99999999999999999999999998766543                                                


Q ss_pred             --------EecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC
Q 005473          592 --------TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (695)
Q Consensus       592 --------~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg  663 (695)
                              .+.+|...|.+++|+|++.+|++++.|+.|++||++++. ++..+.+|...|.+++|+|++  ++++++.|+
T Consensus       234 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~  310 (425)
T 1r5m_A          234 ITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN-SQNCFYGHSQSIVSASWVGDD--KVISCSMDG  310 (425)
T ss_dssp             TTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBS-CSEEECCCSSCEEEEEEETTT--EEEEEETTS
T ss_pred             cCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc-cceEecCCCccEEEEEECCCC--EEEEEeCCC
Confidence                    334678889999999999999999999999999999866 478888999999999999998  677999999


Q ss_pred             cEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          664 EIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       664 ~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      .|++||+++++++..+..|...|++++| +|+
T Consensus       311 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~-s~~  341 (425)
T 1r5m_A          311 SVRLWSLKQNTLLALSIVDGVPIFAGRI-SQD  341 (425)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCEEEEEE-CTT
T ss_pred             cEEEEECCCCcEeEecccCCccEEEEEE-cCC
Confidence            9999999999999999999999999999 985

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.87  E-value=7.9e-21  Score=206.17  Aligned_cols=166  Identities=20%  Similarity=0.216  Sum_probs=147.3

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~-~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~  585 (695)
                      ..+++++.|+.|++|+...+.                   ....+. .|...|++++|+|++++|++|+.||.|+|||+.
T Consensus       104 ~~l~~~~~d~~v~lw~~~~~~-------------------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~  164 (401)
T 4aez_A          104 LNVVAVALERNVYVWNADSGS-------------------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE  164 (401)
T ss_dssp             TSEEEEEETTEEEEEETTTCC-------------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCEEEEECCCeEEEeeCCCCc-------------------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence            346778899999999764431                   122222 388899999999999999999999999999999


Q ss_pred             CCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcE
Q 005473          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (695)
Q Consensus       586 t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~I  665 (695)
                      +++.+..+.+|...|.+++|+  +.+|++|+.||.|++||++.....+..+.+|.+.|.+++|+|++. +|++|+.|+.|
T Consensus       165 ~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v  241 (401)
T 4aez_A          165 SQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL-QLASGGNDNVV  241 (401)
T ss_dssp             TCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCE
T ss_pred             CCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCC-EEEEEeCCCeE
Confidence            999999999999999999994  579999999999999999976667889999999999999999987 67799999999


Q ss_pred             EEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          666 RYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       666 riWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ++||+++++++..+.+|...|.+++| +|+
T Consensus       242 ~iwd~~~~~~~~~~~~~~~~v~~~~~-~p~  270 (401)
T 4aez_A          242 QIWDARSSIPKFTKTNHNAAVKAVAW-CPW  270 (401)
T ss_dssp             EEEETTCSSEEEEECCCSSCCCEEEE-CTT
T ss_pred             EEccCCCCCccEEecCCcceEEEEEE-CCC
Confidence            99999999999999999999999999 984

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.87  E-value=3.2e-20  Score=192.78  Aligned_cols=167  Identities=18%  Similarity=0.193  Sum_probs=146.6

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      +++++++.|+.|++|+....                 .......+..|...|.+++|+|++++|++++.|+.|++||+++
T Consensus       110 ~~l~~~~~d~~i~~~d~~~~-----------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~  172 (337)
T 1gxr_A          110 CTLIVGGEASTLSIWDLAAP-----------------TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN  172 (337)
T ss_dssp             SEEEEEESSSEEEEEECCCC-------------------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             CEEEEEcCCCcEEEEECCCC-----------------CcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Confidence            78899999999999976432                 1134566778999999999999999999999999999999999


Q ss_pred             CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEE
Q 005473          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (695)
Q Consensus       587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~Ir  666 (695)
                      ++.+..+.+|...|.+++|+|++.+|++++.|+.|++||+++++. +..+ .|...|.+++|+|++. ++++++.|+.|+
T Consensus       173 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~-~~~~~v~~~~~s~~~~-~l~~~~~~~~i~  249 (337)
T 1gxr_A          173 QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ-LQQH-DFTSQIFSLGYCPTGE-WLAVGMESSNVE  249 (337)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEE-ECSSCEEEEEECTTSS-EEEEEETTSCEE
T ss_pred             CceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCce-Eeee-cCCCceEEEEECCCCC-EEEEEcCCCcEE
Confidence            999999999999999999999999999999999999999998654 5554 4778899999999988 666888999999


Q ss_pred             EEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          667 YWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       667 iWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +||+++++. ..+..|...|++++| +|+
T Consensus       250 ~~~~~~~~~-~~~~~~~~~v~~~~~-~~~  276 (337)
T 1gxr_A          250 VLHVNKPDK-YQLHLHESCVLSLKF-AYC  276 (337)
T ss_dssp             EEETTSSCE-EEECCCSSCEEEEEE-CTT
T ss_pred             EEECCCCCe-EEEcCCccceeEEEE-CCC
Confidence            999998765 467789999999999 985

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.87  E-value=5.3e-21  Score=224.74  Aligned_cols=183  Identities=19%  Similarity=0.265  Sum_probs=163.6

Q ss_pred             CCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 005473          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (695)
Q Consensus       477 s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~  556 (695)
                      .++..+..+.|+|++               .++++|+.|+.|++|+...+                   ..+..+.+|.+
T Consensus        11 ~h~~~v~~i~~sp~~---------------~~la~~~~~g~v~iwd~~~~-------------------~~~~~~~~~~~   56 (814)
T 3mkq_A           11 NRSDRVKGIDFHPTE---------------PWVLTTLYSGRVEIWNYETQ-------------------VEVRSIQVTET   56 (814)
T ss_dssp             EECSCEEEEEECSSS---------------SEEEEEETTSEEEEEETTTT-------------------EEEEEEECCSS
T ss_pred             cCCCceEEEEECCCC---------------CEEEEEeCCCEEEEEECCCC-------------------ceEEEEecCCC
Confidence            455678888888877               78999999999999966432                   35667789999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 005473          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~  636 (695)
                      .|.+++|+|++++|++|+.||.|+|||+.+++.+..+.+|.+.|++++|+|++.+|++++.||+|++||++++..+...+
T Consensus        57 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  136 (814)
T 3mkq_A           57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF  136 (814)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEE
T ss_pred             cEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999876778899


Q ss_pred             ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCC-CcEEEEEEeCC
Q 005473          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFF-ESFVSVRVVQP  694 (695)
Q Consensus       637 ~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~-~~VtsVaf~sP  694 (695)
                      .+|...|++++|+|++..+|++|+.||.|++||++++.+...+..|. ..|.+++| +|
T Consensus       137 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~-~~  194 (814)
T 3mkq_A          137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDY-YP  194 (814)
T ss_dssp             ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEE-CC
T ss_pred             cCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEE-EE
Confidence            99999999999999434478899999999999999998888887655 89999999 87

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.87  E-value=3.7e-21  Score=204.35  Aligned_cols=210  Identities=7%  Similarity=-0.020  Sum_probs=153.5

Q ss_pred             cccccCCCCCceEEEEecCCCcccc----ccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeee
Q 005473          472 PTLQHNGASSKSLLMFGSDGMGSLT----SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTE  547 (695)
Q Consensus       472 ~~l~~s~s~~~s~l~~~~dg~~~la----~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~  547 (695)
                      ..+...++.+..+..|.......+.    .....+..+.. +++++.|++|++|.....       ..+++.....   .
T Consensus        48 ~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~-------~~~~~~~~~~---~  116 (343)
T 3lrv_A           48 KWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA-IISRGPCNRLLLLYPGNQ-------ITILDSKTNK---V  116 (343)
T ss_dssp             EEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS-EEEECSTTEEEEEETTTE-------EEEEETTTCC---E
T ss_pred             CCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc-eEEecCCCeEEEEEccCc-------eEEeecCCcc---e
Confidence            3456677788888888876542111    11111222223 889999999999965431       1223333322   2


Q ss_pred             EEEe-cCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeEEEEec-ccCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 005473          548 FQLI-PASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRV  623 (695)
Q Consensus       548 v~~l-~~H~~~V~~v~fsp--dg~~LaSgs~Dg~V~IWDl~t~~~~~~l~-~H~~~V~~v~~spdg~~LaTgs~DgtIrv  623 (695)
                      +..+ .+|.+.|.+++|+|  ++++|++|+.||+|+|||+++++++..+. .|...|++++|+|++.+|++|+.||+|+|
T Consensus       117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i  196 (343)
T 3lrv_A          117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV  196 (343)
T ss_dssp             EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred             eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence            2222 36788999999999  99999999999999999999999877664 45668999999999999999999999999


Q ss_pred             EECCCCCeeEEEEec-CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec---CCCcEE--EEEEeCCC
Q 005473          624 WDTENPDYSLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKN---FFESFV--SVRVVQPR  695 (695)
Q Consensus       624 WDl~t~~~~l~~~~g-h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~---h~~~Vt--sVaf~sPd  695 (695)
                      ||++++......+.+ |.+.|++++|+|++. +|++++ |+.|++||+++++++..+..   |...+.  +++| +|+
T Consensus       197 wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~-~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  271 (343)
T 3lrv_A          197 YNLSSPDQASSRFPVDEEAKIKEVKFADNGY-WMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDI-DDS  271 (343)
T ss_dssp             EESSCTTSCCEECCCCTTSCEEEEEECTTSS-EEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEE-CTT
T ss_pred             EECCCCCCCccEEeccCCCCEEEEEEeCCCC-EEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEE-CCC
Confidence            999998764377887 999999999999988 565777 55999999999887665543   444444  5999 885

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.87  E-value=1.3e-20  Score=194.87  Aligned_cols=163  Identities=21%  Similarity=0.341  Sum_probs=135.1

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEE
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKKAVLWC  583 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspd--g~~LaSgs~Dg~V~IWD  583 (695)
                      ..++++|+.|+.|++|+...+..          ......+..+..+.+|.+.|.+++|+|+  +++|++++.|+.|+|||
T Consensus        71 ~~~l~s~~~dg~v~vwd~~~~~~----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd  140 (351)
T 3f3f_A           71 GRIIASASYDKTVKLWEEDPDQE----------ECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYD  140 (351)
T ss_dssp             CSEEEEEETTSCEEEEEECTTSC----------TTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEE
T ss_pred             CCEEEEEcCCCeEEEEecCCCcc----------cccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEec
Confidence            37899999999999998765432          1122344667788899999999999999  99999999999999999


Q ss_pred             CCCCe------------------------------------------------------------EEEEecccCCCeEEE
Q 005473          584 TESFT------------------------------------------------------------VKSTLEEHTQWITDV  603 (695)
Q Consensus       584 l~t~~------------------------------------------------------------~~~~l~~H~~~V~~v  603 (695)
                      +++++                                                            .+..+.+|...|+++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  220 (351)
T 3f3f_A          141 ALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSI  220 (351)
T ss_dssp             CSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEE
T ss_pred             CCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEE
Confidence            86532                                                            145566899999999


Q ss_pred             EEcCCC----CEEEEEeCCCeEEEEECCCCC---------------------------------------------eeEE
Q 005473          604 RFSPSL----SRLATSSADRTVRVWDTENPD---------------------------------------------YSLR  634 (695)
Q Consensus       604 ~~spdg----~~LaTgs~DgtIrvWDl~t~~---------------------------------------------~~l~  634 (695)
                      +|+|++    .+|++|+.||+|++||++.+.                                             .++.
T Consensus       221 ~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (351)
T 3f3f_A          221 SWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLS  300 (351)
T ss_dssp             EECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEE
T ss_pred             EECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEE
Confidence            999998    799999999999999998641                                             3567


Q ss_pred             EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEE
Q 005473          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF  679 (695)
Q Consensus       635 ~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~  679 (695)
                      .+.+|...|++++|+|++. +|++|+.||.|+|||+.+++.+..+
T Consensus       301 ~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          301 EHDDHNGEVWSVSWNLTGT-ILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             EECTTSSCEEEEEECSSSC-CEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             EEecccccEEEEEEcCCCC-EEEEecCCCcEEEEecCcCcchhhe
Confidence            7889999999999999987 6779999999999999987544433

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.87  E-value=3.7e-20  Score=190.51  Aligned_cols=178  Identities=20%  Similarity=0.274  Sum_probs=147.8

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCC---------------------------CccccccccCCCceeeeEEEecCCCCCe
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPR---------------------------DRVGRSAEVGKGFTFTEFQLIPASTSKV  558 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~---------------------------~~~~~~~d~~~~~~~~~v~~l~~H~~~V  558 (695)
                      ..++++++.|+.|++|+........                           +...++|+     ....+..+..|...|
T Consensus        71 ~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d-----~~~~~~~~~~~~~~v  145 (313)
T 3odt_A           71 KELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK-----EGSLVYNLQAHNASV  145 (313)
T ss_dssp             TTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE-----TTEEEEEEECCSSCE
T ss_pred             CCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc-----CCcEEEecccCCCce
Confidence            3677888888888888665432111                           11112222     124556778899999


Q ss_pred             EEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEecc-cCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 005473          559 ESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (695)
Q Consensus       559 ~~v~fsp-dg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~-H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~  636 (695)
                      .++.|++ ++++|++++.|+.|++||  ..+.+..+.. |...|.+++|+|++. |++++.|+.|++||+++++ ++..+
T Consensus       146 ~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~-~~~~~  221 (313)
T 3odt_A          146 WDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGD-VLRTY  221 (313)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCC-EEEEE
T ss_pred             eEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchh-hhhhh
Confidence            9999988 899999999999999999  4567777777 999999999999987 9999999999999999876 48889


Q ss_pred             ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       637 ~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      .+|...|++++|+|++.  +++|+.||.|++||+++++++..+..|...|++++| +|+
T Consensus       222 ~~~~~~i~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~-~~~  277 (313)
T 3odt_A          222 EGHESFVYCIKLLPNGD--IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDC-MSN  277 (313)
T ss_dssp             ECCSSCEEEEEECTTSC--EEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEE-CTT
T ss_pred             hcCCceEEEEEEecCCC--EEEEecCCEEEEEECCCCceeEEEeccCceEEEEEE-ccC
Confidence            99999999999999983  568999999999999999999999999999999999 885

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.87  E-value=2.6e-20  Score=204.83  Aligned_cols=166  Identities=17%  Similarity=0.319  Sum_probs=144.3

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      +++++|+.|++|++|+...+                   ..+..+.+|.+.|.+++|++++ +|++|+.||+|+|||+++
T Consensus       133 ~~l~sgs~dg~i~vwd~~~~-------------------~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~  192 (464)
T 3v7d_B          133 NYVITGADDKMIRVYDSINK-------------------KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK  192 (464)
T ss_dssp             TEEEEEETTSCEEEEETTTT-------------------EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTT
T ss_pred             CEEEEEcCCCcEEEEECCCC-------------------cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCC
Confidence            68999999999999965432                   4567788999999999999988 999999999999999999


Q ss_pred             CeEEEEecccCCCeEEEEEc--CCCCEEEEEeCCCeEEEEECCCCC----------------------------------
Q 005473          587 FTVKSTLEEHTQWITDVRFS--PSLSRLATSSADRTVRVWDTENPD----------------------------------  630 (695)
Q Consensus       587 ~~~~~~l~~H~~~V~~v~~s--pdg~~LaTgs~DgtIrvWDl~t~~----------------------------------  630 (695)
                      ++++..+.+|.+.|.+++|+  +++.+|++|+.|++|++||+++..                                  
T Consensus       193 ~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (464)
T 3v7d_B          193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS  272 (464)
T ss_dssp             TEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSC
T ss_pred             CcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccce
Confidence            99999999999999999998  466777777777777777765421                                  


Q ss_pred             ----------------------------eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecC
Q 005473          631 ----------------------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF  682 (695)
Q Consensus       631 ----------------------------~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h  682 (695)
                                                  .++..+.+|...|++++|+|++. ++++|+.||.|++||+++++++..+.+|
T Consensus       273 v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h  351 (464)
T 3v7d_B          273 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK-RCISASMDTTIRIWDLENGELMYTLQGH  351 (464)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEEeCC
Confidence                                        13455678999999999999988 6679999999999999999999999999


Q ss_pred             CCcEEEEEEeCC
Q 005473          683 FESFVSVRVVQP  694 (695)
Q Consensus       683 ~~~VtsVaf~sP  694 (695)
                      ...|++++| ++
T Consensus       352 ~~~v~~~~~-~~  362 (464)
T 3v7d_B          352 TALVGLLRL-SD  362 (464)
T ss_dssp             SSCEEEEEE-CS
T ss_pred             CCcEEEEEE-cC
Confidence            999999999 75

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.87  E-value=4e-21  Score=201.92  Aligned_cols=191  Identities=19%  Similarity=0.286  Sum_probs=154.1

Q ss_pred             cccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEe--
Q 005473          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI--  551 (695)
Q Consensus       474 l~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l--  551 (695)
                      +...+..++..+.|+|+..           +....+++++.++.|++|+...+.                ....+...  
T Consensus        13 ~~~~h~~~v~~i~~~p~~~-----------~~~~~~~~~~~~~~v~vw~~~~~~----------------~~~~~~~~~~   65 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSK-----------EGDPLVFATVGSNRVTLYECHSQG----------------EIRLLQSYVD   65 (366)
T ss_dssp             EECTTCSCEEEEEECTTCC-----------TTSCEEEEEEETTEEEEEEECGGG----------------CEEEEEEEEC
T ss_pred             eecCCCCceEEEEEecccC-----------CCCceEEEECCCCEEEEEEcCCCc----------------EEEeeeeccc
Confidence            3345677899999998621           112555666667799999764321                11222222  


Q ss_pred             cCCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEC
Q 005473          552 PASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDT  626 (695)
Q Consensus       552 ~~H~~~V~~v~fspd----g~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWDl  626 (695)
                      ..|...|++++|+|+    +++|++|+.||.|+|||+.+++++..+.+|...|.+++|+| ++.+|++|+.||+|++||+
T Consensus        66 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~  145 (366)
T 3k26_A           66 ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI  145 (366)
T ss_dssp             SCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred             cCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEe
Confidence            247788999999999    67999999999999999999999999999999999999999 8999999999999999999


Q ss_pred             CCCCeeEEEE---ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec----------------------
Q 005473          627 ENPDYSLRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKN----------------------  681 (695)
Q Consensus       627 ~t~~~~l~~~---~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~----------------------  681 (695)
                      ++++ ++..+   .+|...|.+++|+|++. +|++|+.||.|++||+++++++..+..                      
T Consensus       146 ~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (366)
T 3k26_A          146 QTDT-LVAIFGGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPD  223 (366)
T ss_dssp             TTTE-EEEEECSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCS
T ss_pred             ecCe-EEEEecccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCc
Confidence            9865 46776   68999999999999987 666999999999999998766544443                      


Q ss_pred             ------CCCcEEEEEEeCC
Q 005473          682 ------FFESFVSVRVVQP  694 (695)
Q Consensus       682 ------h~~~VtsVaf~sP  694 (695)
                            |...|++|+| ++
T Consensus       224 ~~~~~~~~~~v~~~~~-~~  241 (366)
T 3k26_A          224 FSTRDIHRNYVDCVRW-LG  241 (366)
T ss_dssp             EEECSSCSSCCCEEEE-ET
T ss_pred             cccccCCcceEEEEEE-cC
Confidence                  9999999998 53

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.87  E-value=1.8e-20  Score=200.75  Aligned_cols=157  Identities=21%  Similarity=0.170  Sum_probs=132.7

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      .++++++.|+.|++|+...                 .....+....+|...|.+++|+|++++|++|+.|+.|+|||+ +
T Consensus       132 ~~l~s~~~d~~i~iwd~~~-----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~  193 (383)
T 3ei3_B          132 NQLFVSSIRGATTLRDFSG-----------------SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-D  193 (383)
T ss_dssp             EEEEEEETTTEEEEEETTS-----------------CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-T
T ss_pred             CEEEEEeCCCEEEEEECCC-----------------CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-C
Confidence            7899999999999996642                 112223333456688999999999999999999999999999 5


Q ss_pred             CeEEEEecccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCC---CeeEEEEecCCCCeEEEEEec-CCCeEEEEEeC
Q 005473          587 FTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENP---DYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDN  661 (695)
Q Consensus       587 ~~~~~~l~~H~~~V~~v~~spdg~-~LaTgs~DgtIrvWDl~t~---~~~l~~~~gh~~~V~sl~fsp-dg~~llaSgs~  661 (695)
                      ++++..+.+|...|.+++|+|++. +|++++.|++|++||+++.   ..++..+ +|...|++++|+| ++. +|++++.
T Consensus       194 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~-~l~~~~~  271 (383)
T 3ei3_B          194 GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDST-KLLTTDQ  271 (383)
T ss_dssp             SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSC-EEEEEES
T ss_pred             CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCC-EEEEEcC
Confidence            778889999999999999999998 9999999999999999873   2235555 6999999999999 877 6679999


Q ss_pred             CCcEEEEECCCCeEEEEEecCC
Q 005473          662 NSEIRYWSINNGSCAGVFKNFF  683 (695)
Q Consensus       662 Dg~IriWDl~tg~~v~~~~~h~  683 (695)
                      |+.|++||+++++++..+.+|.
T Consensus       272 d~~i~iwd~~~~~~~~~~~~~~  293 (383)
T 3ei3_B          272 RNEIRVYSSYDWSKPDQIIIHP  293 (383)
T ss_dssp             SSEEEEEETTBTTSCSEEEECC
T ss_pred             CCcEEEEECCCCcccccccccc
Confidence            9999999999998887777653

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.86  E-value=8.9e-21  Score=224.06  Aligned_cols=186  Identities=16%  Similarity=0.210  Sum_probs=160.3

Q ss_pred             cCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 005473          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (695)
Q Consensus       476 ~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~  555 (695)
                      ..+...+.++.|++++               .++++|+.|++|++|+...                 .....+..+.+|.
T Consensus         6 ~gH~~~V~~l~~s~dg---------------~~latg~~dg~I~vwd~~~-----------------~~~~~~~~l~~h~   53 (753)
T 3jro_A            6 NAHNELIHDAVLDYYG---------------KRLATCSSDKTIKIFEVEG-----------------ETHKLIDTLTGHE   53 (753)
T ss_dssp             --CCCCEEEECCCSSS---------------CCEEEEETTTEEEEEEEET-----------------TEEEEEEEECCCS
T ss_pred             ccCcceeEEEEECCCC---------------CeEEEEECCCcEEEEecCC-----------------CCCccceeccCCc
Confidence            3455678888888766               6789999999999996532                 1335677889999


Q ss_pred             CCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCe--EEEEecccCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCC
Q 005473          556 SKVESCHFSPD--GKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENP  629 (695)
Q Consensus       556 ~~V~~v~fspd--g~~LaSgs~Dg~V~IWDl~t~~--~~~~l~~H~~~V~~v~~spd--g~~LaTgs~DgtIrvWDl~t~  629 (695)
                      +.|++++|+++  +++|++|+.||.|+|||+.+++  .+..+.+|...|++++|+|+  +.+|++|+.||+|++||++++
T Consensus        54 ~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~  133 (753)
T 3jro_A           54 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN  133 (753)
T ss_dssp             SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSS
T ss_pred             CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecC
Confidence            99999999988  9999999999999999999887  77788899999999999999  999999999999999999876


Q ss_pred             C-eeEEEEecCCCCeEEEEEecC-------------CCeEEEEEeCCCcEEEEECCCC----eEEEEEecCCCcEEEEEE
Q 005473          630 D-YSLRTFTGHSTTVMSLDFHPS-------------KEDLLCSCDNNSEIRYWSINNG----SCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       630 ~-~~l~~~~gh~~~V~sl~fspd-------------g~~llaSgs~Dg~IriWDl~tg----~~v~~~~~h~~~VtsVaf  691 (695)
                      . .....+.+|...|++++|+|.             +. ++++|+.||.|++||++++    .++..+.+|.++|++|+|
T Consensus       134 ~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~  212 (753)
T 3jro_A          134 GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW  212 (753)
T ss_dssp             SCCCCEEEECCSSCEEEEEECCCC---------CGGGC-CEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE
T ss_pred             CCcceeEeecCCCceEEEEecCcccccccccccCCCCC-EEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEe
Confidence            3 235677889999999999994             55 6779999999999999877    677888899999999999


Q ss_pred             eCCC
Q 005473          692 VQPR  695 (695)
Q Consensus       692 ~sPd  695 (695)
                       +|+
T Consensus       213 -sp~  215 (753)
T 3jro_A          213 -SPT  215 (753)
T ss_dssp             -CCC
T ss_pred             -ccC
Confidence             985

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.86  E-value=5e-20  Score=193.41  Aligned_cols=144  Identities=20%  Similarity=0.314  Sum_probs=128.7

Q ss_pred             EEEecCCCC--CeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 005473          548 FQLIPASTS--KVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (695)
Q Consensus       548 v~~l~~H~~--~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t-~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvW  624 (695)
                      +..+..|..  .|.+++|+|++++|++++.||.|++||+++ .+.+..+..|...|.+++|+|++.+|++++.|+.|++|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~  245 (369)
T 3zwl_B          166 IHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLV  245 (369)
T ss_dssp             SEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             eeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEE
Confidence            344455665  899999999999999999999999999998 78889999999999999999999999999999999999


Q ss_pred             ECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC--------------cEEEEECCCCeEEEEEecCCCcEEEEE
Q 005473          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--------------EIRYWSINNGSCAGVFKNFFESFVSVR  690 (695)
Q Consensus       625 Dl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg--------------~IriWDl~tg~~v~~~~~h~~~VtsVa  690 (695)
                      |++++.. +..+. +...+.+++|+|++..+ ++++.++              .|++||+.+++++..+.+|...|++++
T Consensus       246 d~~~~~~-~~~~~-~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~  322 (369)
T 3zwl_B          246 DVSTLQV-LKKYE-TDCPLNTAVITPLKEFI-ILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVA  322 (369)
T ss_dssp             ETTTCCE-EEEEE-CSSCEEEEEECSSSSEE-EEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             ECCCCce-eeeec-CCCCceeEEecCCCceE-EEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEE
Confidence            9998764 66666 77889999999999854 4666666              899999999999999999999999999


Q ss_pred             EeCCC
Q 005473          691 VVQPR  695 (695)
Q Consensus       691 f~sPd  695 (695)
                      | +|+
T Consensus       323 ~-s~~  326 (369)
T 3zwl_B          323 I-SPQ  326 (369)
T ss_dssp             E-CTT
T ss_pred             E-CCC
Confidence            9 985

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.86  E-value=1.5e-20  Score=205.04  Aligned_cols=187  Identities=13%  Similarity=0.127  Sum_probs=150.3

Q ss_pred             cCCCCCceEEEEec-CCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 005473          476 HNGASSKSLLMFGS-DGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS  554 (695)
Q Consensus       476 ~s~s~~~s~l~~~~-dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H  554 (695)
                      ..+...+..+.|++ ++               .++++|+.|++|++|+.....             .+........+ +|
T Consensus        60 ~~h~~~V~~~~~s~~~~---------------~~l~s~s~dg~v~vwd~~~~~-------------~~~~~~~~~~~-~h  110 (437)
T 3gre_A           60 ENEPNSITSSAVSPGET---------------PYLITGSDQGVIKIWNLKEII-------------VGEVYSSSLTY-DC  110 (437)
T ss_dssp             TTTTSCEEEEEEECSSS---------------CEEEEEETTSEEEEEEHHHHH-------------TTCCCSCSEEE-EC
T ss_pred             cCCCCceEEEEECCCCC---------------CEEEEecCCceEEEeECcccc-------------cCcccceeeec-cC
Confidence            34567888889988 65               789999999999999753310             01111112222 58


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECC---CCeEEEEecc------------cCCCeEEEE--EcCCCCEEEEEeC
Q 005473          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE---SFTVKSTLEE------------HTQWITDVR--FSPSLSRLATSSA  617 (695)
Q Consensus       555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~---t~~~~~~l~~------------H~~~V~~v~--~spdg~~LaTgs~  617 (695)
                      ...|++|+|+|++++|++|+.||+|+|||++   +++.+..+.+            +...+.++.  +++++.+|++|+.
T Consensus       111 ~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (437)
T 3gre_A          111 SSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTN  190 (437)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEET
T ss_pred             CCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeC
Confidence            9999999999999999999999999999994   4444433322            456677777  5678999999999


Q ss_pred             CCeEEEEECCCCCeeEEEEec--CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe-cCCCcEEEEEEeCC
Q 005473          618 DRTVRVWDTENPDYSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-NFFESFVSVRVVQP  694 (695)
Q Consensus       618 DgtIrvWDl~t~~~~l~~~~g--h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~-~h~~~VtsVaf~sP  694 (695)
                      |++|++||++++.. +..+.+  |.+.|++++|+|++. +|++|+.||.|++||+++++++..+. .|..+|++|+| +|
T Consensus       191 d~~i~iwd~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-~~  267 (437)
T 3gre_A          191 LSRVIIFDIRTLER-LQIIENSPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEV-CQ  267 (437)
T ss_dssp             TSEEEEEETTTCCE-EEEEECCGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEE-CT
T ss_pred             CCeEEEEeCCCCee-eEEEccCCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEe-cc
Confidence            99999999998664 788887  889999999999987 67799999999999999999999987 88889999987 76

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.86  E-value=4.9e-21  Score=206.00  Aligned_cols=185  Identities=12%  Similarity=0.279  Sum_probs=156.5

Q ss_pred             CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 005473          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (695)
Q Consensus       478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~  557 (695)
                      +...+..+.|++++               .++++|+.|+.|++|+......               ....+..+.+|...
T Consensus        66 ~~~~v~~~~~s~~~---------------~~l~~~~~dg~v~vw~~~~~~~---------------~~~~~~~~~~h~~~  115 (416)
T 2pm9_A           66 VDSKFNDLDWSHNN---------------KIIAGALDNGSLELYSTNEANN---------------AINSMARFSNHSSS  115 (416)
T ss_dssp             CSSCEEEEEECSSS---------------SCEEEEESSSCEEEECCSSTTS---------------CCCEEEECCCSSSC
T ss_pred             cCCceEEEEECCCC---------------CeEEEEccCCeEEEeecccccc---------------cccchhhccCCccc
Confidence            34567777777765               6789999999999997643210               11356778899999


Q ss_pred             eEEEEEcCC-CCEEEEEeCCCcEEEEECCCCe------EEEE---ecccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEC
Q 005473          558 VESCHFSPD-GKLLATGGHDKKAVLWCTESFT------VKST---LEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDT  626 (695)
Q Consensus       558 V~~v~fspd-g~~LaSgs~Dg~V~IWDl~t~~------~~~~---l~~H~~~V~~v~~spd-g~~LaTgs~DgtIrvWDl  626 (695)
                      |.+++|+|+ +++|++|+.|+.|+|||+++++      ....   +.+|...|.+++|+|+ +.+|++++.|+.|++||+
T Consensus       116 v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~  195 (416)
T 2pm9_A          116 VKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDL  195 (416)
T ss_dssp             CCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEET
T ss_pred             eEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEEC
Confidence            999999998 8999999999999999998876      3322   3679999999999998 789999999999999999


Q ss_pred             CCCCeeEEEEecC------CCCeEEEEEecCCCeEEEEEeCCC---cEEEEECCCC-eEEEEEe-cCCCcEEEEEEeCC
Q 005473          627 ENPDYSLRTFTGH------STTVMSLDFHPSKEDLLCSCDNNS---EIRYWSINNG-SCAGVFK-NFFESFVSVRVVQP  694 (695)
Q Consensus       627 ~t~~~~l~~~~gh------~~~V~sl~fspdg~~llaSgs~Dg---~IriWDl~tg-~~v~~~~-~h~~~VtsVaf~sP  694 (695)
                      ++++ ++..+..|      ...|.+++|+|++..++++++.|+   .|++||++++ .++..+. +|...|++|+| +|
T Consensus       196 ~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~-s~  272 (416)
T 2pm9_A          196 KAKK-EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDW-CH  272 (416)
T ss_dssp             TTTE-EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEE-CS
T ss_pred             CCCC-cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEe-CC
Confidence            9865 47777766      788999999999877888999998   9999999986 7888888 99999999999 88

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.86  E-value=8.2e-20  Score=190.56  Aligned_cols=183  Identities=20%  Similarity=0.280  Sum_probs=145.1

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCC--------------------------CCCccccccccCCCceeeeEEEecCCCCCeE
Q 005473          506 DRFVDDGSLDDNVESFLSPDDAD--------------------------PRDRVGRSAEVGKGFTFTEFQLIPASTSKVE  559 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~--------------------------~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~  559 (695)
                      ..++++|+.|+.|++|.......                          ..+....+|+....  ......+.+|...|.
T Consensus        98 g~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~--~~~~~~~~~~~~~v~  175 (340)
T 4aow_A           98 GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV--CKYTVQDESHSEWVS  175 (340)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC--EEEEECSSSCSSCEE
T ss_pred             CCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCC--ceEEEEeccccCccc
Confidence            36788888888888886544310                          01112233333222  233445678999999


Q ss_pred             EEEEcCCC--CEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 005473          560 SCHFSPDG--KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (695)
Q Consensus       560 ~v~fspdg--~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~  637 (695)
                      +++|++++  .++++++.|+.|++||+++++++..+.+|.+.|++++|+|++.+|++|+.|++|++||+++.. ++..+.
T Consensus       176 ~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~-~~~~~~  254 (340)
T 4aow_A          176 CVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK-HLYTLD  254 (340)
T ss_dssp             EEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE-EEEEEE
T ss_pred             ceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc-eeeeec
Confidence            99998865  578999999999999999999999999999999999999999999999999999999999865 477776


Q ss_pred             cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe---------cCCCcEEEEEEeCCC
Q 005473          638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---------NFFESFVSVRVVQPR  695 (695)
Q Consensus       638 gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~---------~h~~~VtsVaf~sPd  695 (695)
                      ++ ..|.+++|+|++. ++ +++.|+.|++||++++.++..++         +|...|++|+| +|+
T Consensus       255 ~~-~~v~~~~~~~~~~-~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-s~d  317 (340)
T 4aow_A          255 GG-DIINALCFSPNRY-WL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAW-SAD  317 (340)
T ss_dssp             CS-SCEEEEEECSSSS-EE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEE-CTT
T ss_pred             CC-ceEEeeecCCCCc-ee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEE-CCC
Confidence            54 6799999999865 45 56679999999999988776654         68899999999 986

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.86  E-value=8e-21  Score=203.34  Aligned_cols=186  Identities=13%  Similarity=0.072  Sum_probs=154.9

Q ss_pred             cCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 005473          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (695)
Q Consensus       476 ~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~  555 (695)
                      ..+...+..+.|++                 .++++|+.|+.|++|+......             ...+..+..+.+|.
T Consensus        13 ~~h~~~i~~~~~~~-----------------~~l~s~~~dg~i~iw~~~~~~~-------------~~~~~~~~~~~~h~   62 (397)
T 1sq9_A           13 KAHDADIFSVSACN-----------------SFTVSCSGDGYLKVWDNKLLDN-------------ENPKDKSYSHFVHK   62 (397)
T ss_dssp             SCSSSCEEEEEECS-----------------SEEEEEETTSEEEEEESBCCTT-------------CCGGGGEEEEECCT
T ss_pred             hhhhcCeEEEEecC-----------------CeEEEEcCCCEEEEEECCCccc-------------ccCCCcceEEecCC
Confidence            34556777777765                 5789999999999997754421             11234566778999


Q ss_pred             CCeEEEEEcCC----C---CEEEEEeCCCcEEEEECCCCeE-----EEEeccc-----CCCeEEEEEc----CCCCE-EE
Q 005473          556 SKVESCHFSPD----G---KLLATGGHDKKAVLWCTESFTV-----KSTLEEH-----TQWITDVRFS----PSLSR-LA  613 (695)
Q Consensus       556 ~~V~~v~fspd----g---~~LaSgs~Dg~V~IWDl~t~~~-----~~~l~~H-----~~~V~~v~~s----pdg~~-La  613 (695)
                      ..|++++|+++    +   ++|++++.|+.|+|||+.+++.     +..+..|     ...|.+++|+    |++.+ |+
T Consensus        63 ~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~  142 (397)
T 1sq9_A           63 SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLV  142 (397)
T ss_dssp             TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEE
T ss_pred             CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEE
Confidence            99999999999    9   9999999999999999988876     8888888     5999999999    99999 99


Q ss_pred             EEeCCCeEEEEECCC------CCeeEE-----EE-------ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeE
Q 005473          614 TSSADRTVRVWDTEN------PDYSLR-----TF-------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC  675 (695)
Q Consensus       614 Tgs~DgtIrvWDl~t------~~~~l~-----~~-------~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~  675 (695)
                      +++.|+.|++||+++      +.. +.     .+       ..|...|++++|+|++  +|++|+.||.|++||++++++
T Consensus       143 ~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~  219 (397)
T 1sq9_A          143 ATDVKGTTYIWKFHPFADESNSLT-LNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRP  219 (397)
T ss_dssp             EEETTSCEEEEEEESSSSHHHHTT-TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEE
T ss_pred             EEeCCCcEEEEeCCccccccccce-eeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCce
Confidence            999999999999987      443 33     56       4488999999999998  777999999999999999999


Q ss_pred             EEEEec---C---CCcEEEEEEeCCC
Q 005473          676 AGVFKN---F---FESFVSVRVVQPR  695 (695)
Q Consensus       676 v~~~~~---h---~~~VtsVaf~sPd  695 (695)
                      +..+..   |   ...|++|+| +|+
T Consensus       220 ~~~~~~~~~h~~~~~~i~~i~~-~~~  244 (397)
T 1sq9_A          220 LYNFESQHSMINNSNSIRSVKF-SPQ  244 (397)
T ss_dssp             EEEEECCC---CCCCCEEEEEE-CSS
T ss_pred             eEEEeccccccccCCccceEEE-CCC
Confidence            999999   9   999999999 985

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.86  E-value=7.5e-20  Score=199.89  Aligned_cols=188  Identities=19%  Similarity=0.332  Sum_probs=150.1

Q ss_pred             CCCCcEEEEeeCCCcEEEEeCCCCCCC------------------------CCccccccccCCCceeeeEEEecCCCCCe
Q 005473          503 TDMDRFVDDGSLDDNVESFLSPDDADP------------------------RDRVGRSAEVGKGFTFTEFQLIPASTSKV  558 (695)
Q Consensus       503 ~~~~~~lasgS~D~~V~lw~~~~~~~~------------------------~~~~~~~~d~~~~~~~~~v~~l~~H~~~V  558 (695)
                      .+...++++|+.|++|++|+...+...                        .+....+|+....  ...+..+.+|...|
T Consensus       156 spdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~--~~~~~~~~~h~~~~  233 (420)
T 4gga_A          156 IKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVA--EHHVATLSGHSQEV  233 (420)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSS--SCEEEEEECCSSCE
T ss_pred             CCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeeccc--ceeeEEecccccce
Confidence            334589999999999999988654211                        1111223332221  24567788999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCe----EEEEecccCCCeEEEEEcCCC-CEEEEE--eCCCeEEEEECCCCCe
Q 005473          559 ESCHFSPDGKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSL-SRLATS--SADRTVRVWDTENPDY  631 (695)
Q Consensus       559 ~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~----~~~~l~~H~~~V~~v~~spdg-~~LaTg--s~DgtIrvWDl~t~~~  631 (695)
                      .++.|++++++|++++.|+.|+|||+.+++    .+.....|.+.|.+++|+|.+ .+++++  +.|++|+|||+.++. 
T Consensus       234 ~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~-  312 (420)
T 4gga_A          234 CGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-  312 (420)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE-
T ss_pred             eeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc-
Confidence            999999999999999999999999998764    456778899999999999964 566554  579999999999866 


Q ss_pred             eEEEEecCCCCeEEEEEecCCCeEEEEE-eCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       632 ~l~~~~gh~~~V~sl~fspdg~~llaSg-s~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ++..+..| ..|.++.|+|++..+++++ +.|+.|+|||+.+++++.++.+|.+.|++|+| +|+
T Consensus       313 ~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~-spd  375 (420)
T 4gga_A          313 CLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTM-SPD  375 (420)
T ss_dssp             EEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEE-CTT
T ss_pred             cceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE-cCC
Confidence            46666655 5799999999999777554 37999999999999999999999999999999 996

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.86  E-value=1.5e-20  Score=197.14  Aligned_cols=183  Identities=15%  Similarity=0.229  Sum_probs=151.0

Q ss_pred             CCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeC---CCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecC
Q 005473          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSL---DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA  553 (695)
Q Consensus       477 s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~---D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~  553 (695)
                      .+...+..+.|+|++.              .++++|+.   |+.|++|+...+.                 ... ....+
T Consensus        16 ~h~~~v~~~~~~p~~~--------------~l~~~~s~~~~d~~v~iw~~~~~~-----------------~~~-~~~~~   63 (357)
T 3i2n_A           16 GFNYTVFDCKWVPCSA--------------KFVTMGNFARGTGVIQLYEIQHGD-----------------LKL-LREIE   63 (357)
T ss_dssp             ECSSCEEEEEECTTSS--------------EEEEEEC--CCCEEEEEEEECSSS-----------------EEE-EEEEE
T ss_pred             CCCCceEEEEEcCCCc--------------eEEEecCccCCCcEEEEEeCCCCc-----------------ccc-eeeec
Confidence            3667888999998775              67888887   9999999764331                 111 12237


Q ss_pred             CCCCeEEEEEcCC---CCEEEEEeCCCcEEEEECCCCe-EEEEecccCCCeEEEEE------cCCCCEEEEEeCCCeEEE
Q 005473          554 STSKVESCHFSPD---GKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRF------SPSLSRLATSSADRTVRV  623 (695)
Q Consensus       554 H~~~V~~v~fspd---g~~LaSgs~Dg~V~IWDl~t~~-~~~~l~~H~~~V~~v~~------spdg~~LaTgs~DgtIrv  623 (695)
                      |...|.+++|+|+   +++|++|+.||.|+|||+.+++ ++..+.+|...|.+++|      +|++.+|++++.|++|++
T Consensus        64 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~v  143 (357)
T 3i2n_A           64 KAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKV  143 (357)
T ss_dssp             ESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEE
T ss_pred             ccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEE
Confidence            8899999999998   6999999999999999999888 88899999999999965      678999999999999999


Q ss_pred             EECCCCCeeEEEEecCCC----CeEEEE----EecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          624 WDTENPDYSLRTFTGHST----TVMSLD----FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       624 WDl~t~~~~l~~~~gh~~----~V~sl~----fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      ||++++..++..+..|.+    .|.+++    |+|++. ++++|+.||.|++||+++++++.. ..|...|++++| +|
T Consensus       144 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~-~~  219 (357)
T 3i2n_A          144 WDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEER-VVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEF-DR  219 (357)
T ss_dssp             ECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCC-EEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEE-SC
T ss_pred             EeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCC-EEEEEccCCeEEEEECccCceeee-cCCCCceEEEEc-CC
Confidence            999987756778876655    789998    677877 677999999999999999987554 578899999999 88

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.86  E-value=1.6e-20  Score=207.10  Aligned_cols=182  Identities=15%  Similarity=0.122  Sum_probs=151.2

Q ss_pred             CCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEe--cCCCC
Q 005473          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI--PASTS  556 (695)
Q Consensus       479 s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l--~~H~~  556 (695)
                      ...+..+.|++++.              .++++|+.|+.|++|+....              .+   ..+..+  ..|..
T Consensus       102 ~~~v~~~~~s~d~~--------------~l~~~~~~dg~v~iwd~~~~--------------~~---~~~~~~~~~~~~~  150 (450)
T 2vdu_B          102 YSYIRNLRLTSDES--------------RLIACADSDKSLLVFDVDKT--------------SK---NVLKLRKRFCFSK  150 (450)
T ss_dssp             CCCEEEEEECTTSS--------------EEEEEEGGGTEEEEEEECSS--------------SS---SCEEEEEEEECSS
T ss_pred             CCceEEEEEcCCCC--------------EEEEEECCCCeEEEEECcCC--------------CC---ceeeeeecccCCC
Confidence            34788899999873              34599999999999976411              01   122233  25778


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE----EecccCCCeEEEEEcCC---CCEEEEEeCCCeEEEEECCCC
Q 005473          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS----TLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTENP  629 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~----~l~~H~~~V~~v~~spd---g~~LaTgs~DgtIrvWDl~t~  629 (695)
                      .|.+++|+|++++|++|+.|+.|++||+.++....    .+.+|...|++++|+|+   +.+|++|+.|++|++||++++
T Consensus       151 ~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~  230 (450)
T 2vdu_B          151 RPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC  230 (450)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT
T ss_pred             CceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC
Confidence            89999999999999999999999999998876544    77889999999999999   899999999999999999987


Q ss_pred             CeeEEE-EecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecC-------------------------C
Q 005473          630 DYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF-------------------------F  683 (695)
Q Consensus       630 ~~~l~~-~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h-------------------------~  683 (695)
                      .. +.. +.+|...|++++|+ ++. +|++|+.|+.|++||+++++++..+..+                         .
T Consensus       231 ~~-~~~~~~~h~~~v~~~~~s-d~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (450)
T 2vdu_B          231 FI-VDKWLFGHKHFVSSICCG-KDY-LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIE  307 (450)
T ss_dssp             TC-EEEECCCCSSCEEEEEEC-STT-EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBC
T ss_pred             ce-eeeeecCCCCceEEEEEC-CCC-EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccce
Confidence            75 554 66999999999999 877 6779999999999999999999988733                         3


Q ss_pred             CcEEEEEEeCCC
Q 005473          684 ESFVSVRVVQPR  695 (695)
Q Consensus       684 ~~VtsVaf~sPd  695 (695)
                      ..|.+|+| +|+
T Consensus       308 ~~v~~i~~-~~~  318 (450)
T 2vdu_B          308 FAVSKIIK-SKN  318 (450)
T ss_dssp             CCEEEEEE-CSS
T ss_pred             EEEEEEEE-eCC
Confidence            57889999 875

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.86  E-value=8.9e-20  Score=194.59  Aligned_cols=190  Identities=14%  Similarity=0.291  Sum_probs=157.3

Q ss_pred             CCCCCceEEEEec-CCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEE-----E
Q 005473          477 NGASSKSLLMFGS-DGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQ-----L  550 (695)
Q Consensus       477 s~s~~~s~l~~~~-dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~-----~  550 (695)
                      .+...+..+.|++ ++               .++++|+.|+.|++|+.........           .......     .
T Consensus        41 ~h~~~v~~~~~s~~~~---------------~~l~~~~~dg~i~iw~~~~~~~~~~-----------~~~~~~~~~~~~~   94 (408)
T 4a11_B           41 IHGGGINTLDIEPVEG---------------RYMLSGGSDGVIVLYDLENSSRQSY-----------YTCKAVCSIGRDH   94 (408)
T ss_dssp             CCSSCEEEEEECTTTC---------------CEEEEEETTSCEEEEECCCCSSSSC-----------EEECEEEEECTTC
T ss_pred             ccCCcEEEEEEecCCC---------------CEEEEEcCCCeEEEEECCCCcccce-----------Eeccccccccccc
Confidence            3566888888888 55               7899999999999998765432111           0111111     1


Q ss_pred             ecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCC---CCEEEEEeCCCeEEEEEC
Q 005473          551 IPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDT  626 (695)
Q Consensus       551 l~~H~~~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spd---g~~LaTgs~DgtIrvWDl  626 (695)
                      ..+|...|.+++|+| ++++|++++.|+.|+|||+++++.+..+. +...+.++.|+|.   +.+|++++.|+.|++||+
T Consensus        95 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  173 (408)
T 4a11_B           95 PDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL  173 (408)
T ss_dssp             TTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEES
T ss_pred             cccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeC
Confidence            236999999999999 77899999999999999999999888776 7888999999984   459999999999999999


Q ss_pred             CCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe-EEEEE---------------ecCCCcEEEEE
Q 005473          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVF---------------KNFFESFVSVR  690 (695)
Q Consensus       627 ~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~-~v~~~---------------~~h~~~VtsVa  690 (695)
                      +++.. +..+.+|.+.|.+++|+|+++.++++|+.||.|++||++++. ++..+               .+|...|++++
T Consensus       174 ~~~~~-~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  252 (408)
T 4a11_B          174 KSGSC-SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC  252 (408)
T ss_dssp             SSSCC-CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred             CCcce-eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence            98664 788999999999999999999888899999999999998865 55655               57899999999


Q ss_pred             EeCCC
Q 005473          691 VVQPR  695 (695)
Q Consensus       691 f~sPd  695 (695)
                      | +|+
T Consensus       253 ~-~~~  256 (408)
T 4a11_B          253 F-TSD  256 (408)
T ss_dssp             E-CTT
T ss_pred             E-cCC
Confidence            9 985

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.86  E-value=5.5e-20  Score=189.27  Aligned_cols=194  Identities=19%  Similarity=0.286  Sum_probs=158.9

Q ss_pred             cCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCC--------------------------C
Q 005473          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDAD--------------------------P  529 (695)
Q Consensus       476 ~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~--------------------------~  529 (695)
                      ..+...+..+.| +++               .++++|+.|+.|++|+......                          .
T Consensus        15 ~~h~~~v~~~~~-~~~---------------~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   78 (313)
T 3odt_A           15 KGHDQDVRDVVA-VDD---------------SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGG   78 (313)
T ss_dssp             CCCSSCEEEEEE-EET---------------TEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEE
T ss_pred             hCCCCCcEEEEe-cCC---------------CEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEec
Confidence            345567777777 655               6789999999999998754310                          0


Q ss_pred             CCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcC-C
Q 005473          530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-S  608 (695)
Q Consensus       530 ~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~sp-d  608 (695)
                      .+...++|+.........+..+.+|...|.+++|  ++++|++++.|+.|++||  .++.+..+..|...|.+++|.| +
T Consensus        79 ~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~  154 (313)
T 3odt_A           79 KDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFS  154 (313)
T ss_dssp             TTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETT
T ss_pred             CCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCC
Confidence            1112244444444444556778899999999999  678999999999999999  6788889999999999999988 8


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCeeEEEEec-CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEE
Q 005473          609 LSRLATSSADRTVRVWDTENPDYSLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFV  687 (695)
Q Consensus       609 g~~LaTgs~DgtIrvWDl~t~~~~l~~~~g-h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~Vt  687 (695)
                      +.+|++++.|+.|++||..   ..+..+.. |...|.+++|+|++.  +++|+.||.|++||+++++++..+.+|...|+
T Consensus       155 ~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~  229 (313)
T 3odt_A          155 ENKFLTASADKTIKLWQND---KVIKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHTGDVLRTYEGHESFVY  229 (313)
T ss_dssp             TTEEEEEETTSCEEEEETT---EEEEEECSSCSSCEEEEEEEETTE--EEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             CCEEEEEECCCCEEEEecC---ceEEEEeccCcccEEEEEEcCCCe--EEEccCCCeEEEEECCchhhhhhhhcCCceEE
Confidence            9999999999999999943   34677776 899999999999987  66899999999999999999999999999999


Q ss_pred             EEEEeCCC
Q 005473          688 SVRVVQPR  695 (695)
Q Consensus       688 sVaf~sPd  695 (695)
                      +++| +|+
T Consensus       230 ~~~~-~~~  236 (313)
T 3odt_A          230 CIKL-LPN  236 (313)
T ss_dssp             EEEE-CTT
T ss_pred             EEEE-ecC
Confidence            9999 985

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.86  E-value=4.2e-20  Score=228.12  Aligned_cols=167  Identities=25%  Similarity=0.440  Sum_probs=148.8

Q ss_pred             CCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 005473          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (695)
Q Consensus       477 s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~  556 (695)
                      .+...+..+.|++++               .++++|+.|++|++|+...+                   ..+..+.+|.+
T Consensus       613 ~h~~~v~~~~~s~~~---------------~~l~s~~~d~~i~vw~~~~~-------------------~~~~~~~~h~~  658 (1249)
T 3sfz_A          613 PHTDAVYHACFSQDG---------------QRIASCGADKTLQVFKAETG-------------------EKLLDIKAHED  658 (1249)
T ss_dssp             CCSSCEEEEEECTTS---------------SEEEEEETTSCEEEEETTTC-------------------CEEEEECCCSS
T ss_pred             cccccEEEEEECCCC---------------CEEEEEeCCCeEEEEECCCC-------------------CEEEEeccCCC
Confidence            456678888888876               78999999999999976433                   35667889999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCeeEE
Q 005473          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLR  634 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~sp--dg~~LaTgs~DgtIrvWDl~t~~~~l~  634 (695)
                      .|.+|+|+|++++|++|+.|++|+|||+.+++++..+.+|...|.+++|+|  ++.++++|+.|++|++||++++. ++.
T Consensus       659 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~-~~~  737 (1249)
T 3sfz_A          659 EVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE-CRN  737 (1249)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS-EEE
T ss_pred             CEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc-hhh
Confidence            999999999999999999999999999999999999999999999999999  55689999999999999999876 588


Q ss_pred             EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEE
Q 005473          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF  679 (695)
Q Consensus       635 ~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~  679 (695)
                      .+.+|.+.|++++|+|++. ++++|+.||.|++||+++++++..+
T Consensus       738 ~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~  781 (1249)
T 3sfz_A          738 TMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSI  781 (1249)
T ss_dssp             EECCCSSCEEEEEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEE
T ss_pred             eecCCCCCEEEEEEecCCC-EEEEEECCCeEEEEeCCCCccccee
Confidence            9999999999999999988 6779999999999999887766554

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.85  E-value=7.3e-21  Score=207.52  Aligned_cols=133  Identities=14%  Similarity=0.185  Sum_probs=114.2

Q ss_pred             eeEEEecC--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec-ccCCCeEEEEEcC----CCCEEEEEeCC
Q 005473          546 TEFQLIPA--STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSP----SLSRLATSSAD  618 (695)
Q Consensus       546 ~~v~~l~~--H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~-~H~~~V~~v~~sp----dg~~LaTgs~D  618 (695)
                      ..+..+.+  |.+.|++++|+|++++|++|+.||.|+|||+++++++..+. .|...|.+++|+|    ++.+|++|+.|
T Consensus       203 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~d  282 (437)
T 3gre_A          203 ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSK  282 (437)
T ss_dssp             CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTT
T ss_pred             eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCC
Confidence            45566676  88999999999999999999999999999999999999886 7888999997765    57799999999


Q ss_pred             CeEEEEECCCCCeeEEEEec--------------------------CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473          619 RTVRVWDTENPDYSLRTFTG--------------------------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (695)
Q Consensus       619 gtIrvWDl~t~~~~l~~~~g--------------------------h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t  672 (695)
                      ++|+|||++++. ++..+.+                          |...|++++|+ ++ .+|++|+.|+.|++||+.+
T Consensus       283 g~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~~~d~~i~~wd~~~  359 (437)
T 3gre_A          283 TFLTIWNFVKGH-CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND-KILLTDEATSSIVMFSLNE  359 (437)
T ss_dssp             EEEEEEETTTTE-EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEEEEGGGTEEEEEETTC
T ss_pred             CcEEEEEcCCCc-EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc-eEEEecCCCCeEEEEECCC
Confidence            999999999865 3666554                          44568889999 55 4788999999999999999


Q ss_pred             CeEEEEEec
Q 005473          673 GSCAGVFKN  681 (695)
Q Consensus       673 g~~v~~~~~  681 (695)
                      ++++..+.+
T Consensus       360 ~~~~~~~~~  368 (437)
T 3gre_A          360 LSSSKAVIS  368 (437)
T ss_dssp             GGGCEEEEC
T ss_pred             cccceEEec
Confidence            998888776

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.85  E-value=4e-21  Score=218.36  Aligned_cols=172  Identities=12%  Similarity=0.106  Sum_probs=136.0

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC------CCEEEEEeCCCcEE
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD------GKLLATGGHDKKAV  580 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspd------g~~LaSgs~Dg~V~  580 (695)
                      .++++++.|++|++|+...+..               ......++.+|.+.|.+|+|+|+      +.+||+|+.||+|+
T Consensus       174 ~~laS~s~D~tI~iWd~~~~~~---------------~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dgtvr  238 (524)
T 2j04_B          174 EMFDKEKHSSCIQIFKMNTSTL---------------HCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTIN  238 (524)
T ss_dssp             --------CEEEEEEEEETTTC---------------CEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEE
T ss_pred             hhhccCCCCceEEEEEccCCCC---------------CceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEE
Confidence            4678899999999997643210               11223456778899999999996      57999999999999


Q ss_pred             EEECCCCeE-----------EEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEE--E
Q 005473          581 LWCTESFTV-----------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL--D  647 (695)
Q Consensus       581 IWDl~t~~~-----------~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl--~  647 (695)
                      |||+.++.+           ..++.+|...|++++|+++ ..|++|+.||+|++||++++..++..+.+|...|++|  +
T Consensus       239 lWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~  317 (524)
T 2j04_B          239 FLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTA  317 (524)
T ss_dssp             EEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEE
T ss_pred             EEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEE
Confidence            999976532           3478899999999999986 5899999999999999998766667889999999999  5


Q ss_pred             EecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCC--cEEEEEEeCCC
Q 005473          648 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFE--SFVSVRVVQPR  695 (695)
Q Consensus       648 fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~--~VtsVaf~sPd  695 (695)
                      |+|++..+|++|+.|++|+|||+++++++.++.+|..  .|.+|+| +|+
T Consensus       318 ~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~f-sp~  366 (524)
T 2j04_B          318 YSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVY-CPQ  366 (524)
T ss_dssp             CCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEE-ETT
T ss_pred             cCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEe-CCC
Confidence            6777645889999999999999999998888888764  5889999 985

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.85  E-value=4.7e-20  Score=216.67  Aligned_cols=182  Identities=21%  Similarity=0.349  Sum_probs=157.1

Q ss_pred             CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 005473          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (695)
Q Consensus       478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~  557 (695)
                      +...+..+.|++++               .++++|+.|+.|++|+...+                   ..+..+.+|.+.
T Consensus        54 ~~~~v~~~~~s~~~---------------~~l~~~~~dg~i~vw~~~~~-------------------~~~~~~~~~~~~   99 (814)
T 3mkq_A           54 TETPVRAGKFIARK---------------NWIIVGSDDFRIRVFNYNTG-------------------EKVVDFEAHPDY   99 (814)
T ss_dssp             CSSCEEEEEEEGGG---------------TEEEEEETTSEEEEEETTTC-------------------CEEEEEECCSSC
T ss_pred             CCCcEEEEEEeCCC---------------CEEEEEeCCCeEEEEECCCC-------------------cEEEEEecCCCC
Confidence            34456666666655               78999999999999976433                   355677889999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEecccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeEEE
Q 005473          558 VESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRT  635 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~-~~~~~l~~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWDl~t~~~~l~~  635 (695)
                      |++++|+|++++|++|+.||.|+|||++++ .+...+.+|...|.+++|+| ++..|++++.||+|++||++++......
T Consensus       100 v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~  179 (814)
T 3mkq_A          100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL  179 (814)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEE
T ss_pred             EEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEE
Confidence            999999999999999999999999999886 77788899999999999999 7889999999999999999887653344


Q ss_pred             EecCCCCeEEEEEec--CCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          636 FTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       636 ~~gh~~~V~sl~fsp--dg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ...|...|.+++|+|  ++. ++++|+.||.|++||+++++++..+.+|...|++++| +|+
T Consensus       180 ~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~~  239 (814)
T 3mkq_A          180 TTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF-HPT  239 (814)
T ss_dssp             ECCCTTCCCEEEECCSTTCC-EEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEE-CSS
T ss_pred             ecCCCCCEEEEEEEECCCCC-EEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE-cCC
Confidence            444558899999999  777 6779999999999999999999999999999999999 985

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.85  E-value=2.6e-20  Score=195.45  Aligned_cols=171  Identities=12%  Similarity=0.193  Sum_probs=140.7

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCC----CCCeEEEE----EcCCCCEEEEEeCC
Q 005473          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS----TSKVESCH----FSPDGKLLATGGHD  576 (695)
Q Consensus       505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H----~~~V~~v~----fspdg~~LaSgs~D  576 (695)
                      ...++++++.|+.|++|+.....                  ..+..+..|    ...|.+++    |++++++|++|+.|
T Consensus       128 ~~~~l~~~~~d~~i~vwd~~~~~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d  189 (357)
T 3i2n_A          128 GAPEIVTGSRDGTVKVWDPRQKD------------------DPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN  189 (357)
T ss_dssp             CCCEEEEEETTSCEEEECTTSCS------------------SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT
T ss_pred             CccEEEEEeCCCeEEEEeCCCCC------------------CcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC
Confidence            34789999999999999765432                  012233333    33788988    78899999999999


Q ss_pred             CcEEEEECCCCeEEEEecccCCCeEEEEEcC---CCCEEEEEeCCCeEEEEECCCCCe----eEEEEecCCCCeEEEEEe
Q 005473          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSP---SLSRLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDFH  649 (695)
Q Consensus       577 g~V~IWDl~t~~~~~~l~~H~~~V~~v~~sp---dg~~LaTgs~DgtIrvWDl~t~~~----~l~~~~gh~~~V~sl~fs  649 (695)
                      +.|++||+++++... ...|...|.+++|+|   ++.+|++++.||.|++||++++..    ....+.+|...|++++|+
T Consensus       190 ~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~  268 (357)
T 3i2n_A          190 GDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHL  268 (357)
T ss_dssp             SEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEE
T ss_pred             CeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEEC
Confidence            999999999988754 466899999999999   899999999999999999986442    122344899999999999


Q ss_pred             cCCCeEEEEEeCCCcEEEEECCCC-------------------eEEEEEecCCCcEEEEEEeCCC
Q 005473          650 PSKEDLLCSCDNNSEIRYWSINNG-------------------SCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       650 pdg~~llaSgs~Dg~IriWDl~tg-------------------~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      |++..+|++|+.||.|++||++++                   +++..+.+|..+|++++| +|+
T Consensus       269 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~  332 (357)
T 3i2n_A          269 PQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDW-SPD  332 (357)
T ss_dssp             TTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEE-CSS
T ss_pred             CCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEE-cCC
Confidence            998878889999999999999754                   578889999999999999 985

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.85  E-value=1.5e-19  Score=192.84  Aligned_cols=182  Identities=24%  Similarity=0.308  Sum_probs=151.1

Q ss_pred             CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 005473          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (695)
Q Consensus       478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~  557 (695)
                      +...+..+.|.+++.              .++++++.|+.|++|+....                   ..+..+ .+...
T Consensus        98 ~~~~v~~~~~~~~~~--------------~~l~s~~~d~~i~iwd~~~~-------------------~~~~~~-~~~~~  143 (408)
T 4a11_B           98 HRYSVETVQWYPHDT--------------GMFTSSSFDKTLKVWDTNTL-------------------QTADVF-NFEET  143 (408)
T ss_dssp             CSSCEEEEEECTTCT--------------TCEEEEETTSEEEEEETTTT-------------------EEEEEE-ECSSC
T ss_pred             CCCcEEEEEEccCCC--------------cEEEEEeCCCeEEEeeCCCC-------------------ccceec-cCCCc
Confidence            345667777776443              67899999999999976432                   122233 36777


Q ss_pred             eEEEEEcCC---CCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeE
Q 005473          558 VESCHFSPD---GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSL  633 (695)
Q Consensus       558 V~~v~fspd---g~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~-~LaTgs~DgtIrvWDl~t~~~~l  633 (695)
                      +.++.|++.   +.+|++|+.|+.|+|||+++++++..+.+|...|.+++|+|++. +|++|+.||.|++||+++...++
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~  223 (408)
T 4a11_B          144 VYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCL  223 (408)
T ss_dssp             EEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCS
T ss_pred             eeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccc
Confidence            999999984   45999999999999999999999999999999999999999988 68999999999999999877556


Q ss_pred             EEE---------------ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC-------------------------
Q 005473          634 RTF---------------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-------------------------  673 (695)
Q Consensus       634 ~~~---------------~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg-------------------------  673 (695)
                      ..+               .+|...|.+++|+|++. +|++|+.||.|++||++++                         
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (408)
T 4a11_B          224 ITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL-HLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCG  302 (408)
T ss_dssp             EECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCS
T ss_pred             ccccccccccceeeccccccccCceeEEEEcCCCC-EEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecC
Confidence            665               57889999999999987 5668899999999998653                         


Q ss_pred             ----------------------eEEEEEecCCCcEEEEEEeCCC
Q 005473          674 ----------------------SCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       674 ----------------------~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                                            +++..+.+|.+.|++++| +|+
T Consensus       303 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~-s~~  345 (408)
T 4a11_B          303 CSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVF-QSN  345 (408)
T ss_dssp             SSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEE-ETT
T ss_pred             CCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEE-cCC
Confidence                                  567778899999999999 885

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.85  E-value=6.1e-20  Score=221.46  Aligned_cols=181  Identities=12%  Similarity=0.091  Sum_probs=153.2

Q ss_pred             cCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 005473          476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (695)
Q Consensus       476 ~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~  555 (695)
                      +.+...+.++.|+|++               .++++|+.|++|++|+....                   .... ...|.
T Consensus        14 ~gh~~~V~~lafspdg---------------~~lAsgs~Dg~I~lw~~~~~-------------------~~~~-~~~~~   58 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQ---------------NLLAIATVTGEVHIYGQQQV-------------------EVVI-KLEDR   58 (902)
T ss_dssp             EECSSCEEEEEEETTT---------------TEEEEEETTSEEEEECSTTC-------------------EEEE-ECSSC
T ss_pred             cCCCCCcEEEEECCCC---------------CEEEEEeCCCEEEEEeCCCc-------------------EEEE-EcCCC
Confidence            3455678888998877               78999999999999954211                   1122 23478


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE--
Q 005473          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL--  633 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l--  633 (695)
                      ..|.+|+|+| |++|++++.|++|+|||+++++++..+. |.+.|++++|+|++.+|++|+.||+|++||++++....  
T Consensus        59 ~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~  136 (902)
T 2oaj_A           59 SAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFK  136 (902)
T ss_dssp             CCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccce
Confidence            8999999999 8899999999999999999999988886 77899999999999999999999999999999765311  


Q ss_pred             --------EEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecC------------------CCcEE
Q 005473          634 --------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF------------------FESFV  687 (695)
Q Consensus       634 --------~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h------------------~~~Vt  687 (695)
                              ..+.+|.+.|++++|+|++..++++|+.||.| +||+++++++..+.+|                  ...|+
T Consensus       137 i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~  215 (902)
T 2oaj_A          137 LDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVI  215 (902)
T ss_dssp             ECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEE
T ss_pred             eccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeE
Confidence                    22367999999999999866688899999999 9999999999998866                  57899


Q ss_pred             EEEEeCCC
Q 005473          688 SVRVVQPR  695 (695)
Q Consensus       688 sVaf~sPd  695 (695)
                      +|+| +|+
T Consensus       216 ~v~f-spd  222 (902)
T 2oaj_A          216 QSLY-HPN  222 (902)
T ss_dssp             EEEE-CTT
T ss_pred             EEEE-cCC
Confidence            9999 986

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.85  E-value=1.1e-20  Score=207.62  Aligned_cols=158  Identities=22%  Similarity=0.226  Sum_probs=130.3

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      .++++|+.|++|++|+....                 ....+.....+...|.+++|++++++|++|+.||.|+|||+++
T Consensus       178 ~~l~s~s~D~~v~iwd~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~  240 (435)
T 4e54_B          178 NQFYASSMEGTTRLQDFKGN-----------------ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG  240 (435)
T ss_dssp             TEEEEECSSSCEEEEETTSC-----------------EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS
T ss_pred             CEEEEEeCCCEEEEeeccCC-----------------ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc
Confidence            78999999999999965321                 1122222334555688999999999999999999999999964


Q ss_pred             CeEEEEecccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCe--eEEEEecCCCCeEEEEEecCCCeEEEEEeCCC
Q 005473          587 FTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (695)
Q Consensus       587 ~~~~~~l~~H~~~V~~v~~spdg~-~LaTgs~DgtIrvWDl~t~~~--~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg  663 (695)
                       +.+..+.+|...|++|+|+|++. +|++|+.|++|+|||+++...  .+....+|...|++++|+|+|. +|++|+.||
T Consensus       241 -~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~l~s~~~D~  318 (435)
T 4e54_B          241 -KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA-RLLTTDQKS  318 (435)
T ss_dssp             -CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSS-EEEEEESSS
T ss_pred             -ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCC-eeEEEcCCC
Confidence             56678899999999999999865 788999999999999987553  2234467999999999999998 666999999


Q ss_pred             cEEEEECCCCeEEEEEecCC
Q 005473          664 EIRYWSINNGSCAGVFKNFF  683 (695)
Q Consensus       664 ~IriWDl~tg~~v~~~~~h~  683 (695)
                      .|+|||++++.++..+..|.
T Consensus       319 ~i~iwd~~~~~~~~~~~~~~  338 (435)
T 4e54_B          319 EIRVYSASQWDCPLGLIPHP  338 (435)
T ss_dssp             CEEEEESSSSSSEEEECCCC
T ss_pred             EEEEEECCCCccceEEeccc
Confidence            99999999999888877664

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.85  E-value=2.5e-20  Score=202.74  Aligned_cols=172  Identities=16%  Similarity=0.148  Sum_probs=135.3

Q ss_pred             CCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 005473          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (695)
Q Consensus       477 s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~  556 (695)
                      .+...+..+.|++++               .++++| .|+.|++|+.....    ......+.       ....+.+|..
T Consensus       175 ~h~~~v~~~~~~~~~---------------~~l~s~-~d~~i~iwd~~~~~----~~~~~~~~-------~~~~~~~~~~  227 (447)
T 3dw8_B          175 AHTYHINSISINSDY---------------ETYLSA-DDLRINLWHLEITD----RSFNIVDI-------KPANMEELTE  227 (447)
T ss_dssp             CCSSCCCEEEECTTS---------------SEEEEE-CSSEEEEEETTEEE----EEEEEEEC-------CCSSGGGCCC
T ss_pred             CCCcceEEEEEcCCC---------------CEEEEe-CCCeEEEEECCCCC----ceeeeeec-------ccccccccCc
Confidence            456677888888866               677888 79999999764210    00000000       0013668999


Q ss_pred             CeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeE----EEEecccCC------------CeEEEEEcCCCCEEEEEeCCC
Q 005473          557 KVESCHFSPDG-KLLATGGHDKKAVLWCTESFTV----KSTLEEHTQ------------WITDVRFSPSLSRLATSSADR  619 (695)
Q Consensus       557 ~V~~v~fspdg-~~LaSgs~Dg~V~IWDl~t~~~----~~~l~~H~~------------~V~~v~~spdg~~LaTgs~Dg  619 (695)
                      .|++++|+|++ ++|++|+.||+|+|||+++++.    +..+.+|..            .|.+++|+|++.+|++++. +
T Consensus       228 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~  306 (447)
T 3dw8_B          228 VITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-L  306 (447)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-S
T ss_pred             ceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-C
Confidence            99999999998 9999999999999999999887    788888876            9999999999999999998 9


Q ss_pred             eEEEEECCCCCeeEEEEecCCCC---------------eEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEE
Q 005473          620 TVRVWDTENPDYSLRTFTGHSTT---------------VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG  677 (695)
Q Consensus       620 tIrvWDl~t~~~~l~~~~gh~~~---------------V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~  677 (695)
                      +|+|||+++...++..+.+|...               +..++|+|++. +|++|+.||.|+|||+.+++++.
T Consensus       307 ~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~~  378 (447)
T 3dw8_B          307 SVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDS-VVMTGSYNNFFRMFDRNTKRDIT  378 (447)
T ss_dssp             EEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSS-EEEEECSTTEEEEEETTTCCEEE
T ss_pred             eEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCC-EEEEeccCCEEEEEEcCCCccee
Confidence            99999999745567888888532               33499999998 55799999999999999988763

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.85  E-value=3.1e-20  Score=200.30  Aligned_cols=146  Identities=11%  Similarity=0.071  Sum_probs=119.2

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCC----cEEEE
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK----KAVLW  582 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg----~V~IW  582 (695)
                      .++++++.|+ +++|+...+.                 ........+|...|.+|+|+|+++++++++.|+    .+++|
T Consensus       189 ~~l~s~s~~~-~~~~~~~~~~-----------------~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~  250 (365)
T 4h5i_A          189 KVVAYITGSS-LEVISTVTGS-----------------CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKI  250 (365)
T ss_dssp             SEEEEECSSC-EEEEETTTCC-----------------EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEE
T ss_pred             ceEEecccee-EEEEEeccCc-----------------ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeec
Confidence            7888887554 5555332221                 112234567888999999999999999999887    68889


Q ss_pred             ECCCCeE----EEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE-EecCCCCeEEEEEecCCCeEEE
Q 005473          583 CTESFTV----KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLC  657 (695)
Q Consensus       583 Dl~t~~~----~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~-~~gh~~~V~sl~fspdg~~lla  657 (695)
                      |+.....    ...+.+|...|++++|+|++++||+|+.|++|+|||+++++. +.. +.+|...|++|+|+|||. +|+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~-~~~~~~gH~~~V~~v~fSpdg~-~la  328 (365)
T 4h5i_A          251 SIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSM-SKIFKQAHSFAITEVTISPDST-YVA  328 (365)
T ss_dssp             EEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE-EEEETTSSSSCEEEEEECTTSC-EEE
T ss_pred             ccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcE-EEEecCcccCCEEEEEECCCCC-EEE
Confidence            9876653    346788999999999999999999999999999999998764 665 579999999999999998 677


Q ss_pred             EEeCCCcEEEEECCC
Q 005473          658 SCDNNSEIRYWSINN  672 (695)
Q Consensus       658 Sgs~Dg~IriWDl~t  672 (695)
                      +|+.|++|||||+..
T Consensus       329 S~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          329 SVSAANTIHIIKLPL  343 (365)
T ss_dssp             EEETTSEEEEEECCT
T ss_pred             EEeCCCeEEEEEcCC
Confidence            999999999999964

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.85  E-value=2.7e-20  Score=210.73  Aligned_cols=184  Identities=10%  Similarity=0.100  Sum_probs=141.9

Q ss_pred             CCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCC----------------CCCCccccccccCCCc
Q 005473          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA----------------DPRDRVGRSAEVGKGF  543 (695)
Q Consensus       480 ~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~----------------~~~~~~~~~~d~~~~~  543 (695)
                      .-+..+.|+|||               .++++++.|++|+  +.....                ++.+....+|+.... 
T Consensus        16 ~~v~sv~~SpDG---------------~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~-   77 (588)
T 2j04_A           16 DWKNNLTWARDG---------------TLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQN-   77 (588)
T ss_dssp             SSSCCEEECTTS---------------CEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSS-
T ss_pred             ccEEEEEECCCC---------------CEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCc-
Confidence            456678888888               7889999999996  221111                112222222221111 


Q ss_pred             eeeeEEEec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCC-----CeEEEEEcCCCCEEEEEeC
Q 005473          544 TFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-----WITDVRFSPSLSRLATSSA  617 (695)
Q Consensus       544 ~~~~v~~l~-~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~-----~V~~v~~spdg~~LaTgs~  617 (695)
                           ..+. .|...|.+|+|||+|++||+++.||.|+|||..+  ++..+. |..     .|.+++|+|+|++|++|+.
T Consensus        78 -----~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~  149 (588)
T 2j04_A           78 -----GLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNE  149 (588)
T ss_dssp             -----CSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEET
T ss_pred             -----eEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcC
Confidence                 1122 5578899999999999999999999999999654  666777 765     4999999999999999999


Q ss_pred             CCeEEEEECCCCCe------eEEEE----ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeE---EEEEe-cCC
Q 005473          618 DRTVRVWDTENPDY------SLRTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFK-NFF  683 (695)
Q Consensus       618 DgtIrvWDl~t~~~------~l~~~----~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~---v~~~~-~h~  683 (695)
                      ||+|+|||+.++..      .+.++    .+|..+|.+++|+|+|   +++++.|++|++||+.++.+   +.+++ +|.
T Consensus       150 DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~  226 (588)
T 2j04_A          150 DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASR  226 (588)
T ss_dssp             TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCS
T ss_pred             CCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeeccccc
Confidence            99999999998652      36776    6788899999999998   55778899999999988773   46674 888


Q ss_pred             CcEEEEEEeC
Q 005473          684 ESFVSVRVVQ  693 (695)
Q Consensus       684 ~~VtsVaf~s  693 (695)
                      ..|.+|+| +
T Consensus       227 ~~V~svaF-s  235 (588)
T 2j04_A          227 RKITDLKI-V  235 (588)
T ss_dssp             SCCCCEEE-E
T ss_pred             CcEEEEEE-E
Confidence            99999999 5

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.84  E-value=3.4e-19  Score=194.65  Aligned_cols=167  Identities=17%  Similarity=0.288  Sum_probs=145.9

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      ++|++| .|++|++|+...+.                 ...+..+.+|...|+||+|+|+|++|++|+.||+|+|||+++
T Consensus       117 n~lAvg-ld~tV~lWd~~tg~-----------------~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~  178 (420)
T 4gga_A          117 NVLAVA-LDNSVYLWSASSGD-----------------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ  178 (420)
T ss_dssp             SEEEEE-ETTEEEEEETTTCC-----------------EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             CEEEEE-eCCEEEEEECCCCC-----------------EEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC
Confidence            456666 59999999765431                 123344567889999999999999999999999999999999


Q ss_pred             CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEE
Q 005473          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (695)
Q Consensus       587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~Ir  666 (695)
                      ++++..+.+|...|.++.|+  +.+|++|+.|+.+++||.+.....+..+.+|...++.+.|+|++. ++++++.|+.|+
T Consensus       179 ~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~-~l~s~~~D~~v~  255 (420)
T 4gga_A          179 QKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVN  255 (420)
T ss_dssp             TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEE
T ss_pred             CcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCC-eeeeeeccccce
Confidence            99999999999999999886  579999999999999999988777899999999999999999988 677999999999


Q ss_pred             EEECCCCe----EEEEEecCCCcEEEEEEeCCC
Q 005473          667 YWSINNGS----CAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       667 iWDl~tg~----~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +||+.+++    .+..+..|...|.+++| +|+
T Consensus       256 i~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~p~  287 (420)
T 4gga_A          256 VWPSAPGEGGWVPLQTFTQHQGAVKAVAW-CPW  287 (420)
T ss_dssp             EEESSCCSSCSCCSEEECCCSSCEEEEEE-CTT
T ss_pred             EEeeccccccceeeeeecccCCceeeeee-CCC
Confidence            99998765    46778899999999999 874

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.84  E-value=9.9e-20  Score=205.71  Aligned_cols=181  Identities=15%  Similarity=0.204  Sum_probs=156.7

Q ss_pred             CCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCC-e
Q 005473          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK-V  558 (695)
Q Consensus       480 ~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~-V  558 (695)
                      ..+..+.|++++               +++++++ |+.|++|+...+.               .....+..+.+|.+. |
T Consensus        19 ~~v~~~~~spdg---------------~~l~~~~-~~~v~v~~~~~~~---------------~~~~~~~~~~~h~~~~v   67 (615)
T 1pgu_A           19 NFTTHLSYDPTT---------------NAIAYPC-GKSAFVRCLDDGD---------------SKVPPVVQFTGHGSSVV   67 (615)
T ss_dssp             TCCCCCEEETTT---------------TEEEEEE-TTEEEEEECCSSC---------------CSSCSEEEECTTTTSCE
T ss_pred             CceeEEEECCCC---------------CEEEEec-CCeEEEEECCCCC---------------CccccceEEecCCCceE
Confidence            356677888877               6777777 8899999764321               011345678899999 9


Q ss_pred             EEEEEcC--CCCEEEEEeCCCcEEEEECCCC--------eEEEEecccCCCeEEEEEcCCCCEEEEEeCC----CeEEEE
Q 005473          559 ESCHFSP--DGKLLATGGHDKKAVLWCTESF--------TVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVW  624 (695)
Q Consensus       559 ~~v~fsp--dg~~LaSgs~Dg~V~IWDl~t~--------~~~~~l~~H~~~V~~v~~spdg~~LaTgs~D----gtIrvW  624 (695)
                      ++++|+|  ++++|++|+.||.|+|||+.++        +.+..+..|...|.+++|+|++.+|++++.|    +.|++|
T Consensus        68 ~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~  147 (615)
T 1pgu_A           68 TTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISW  147 (615)
T ss_dssp             EEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEET
T ss_pred             EEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEE
Confidence            9999999  9999999999999999999754        6777888999999999999999999999988    689999


Q ss_pred             ECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCC---cEEEEEEeCCC
Q 005473          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFE---SFVSVRVVQPR  695 (695)
Q Consensus       625 Dl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~---~VtsVaf~sPd  695 (695)
                      |..  . ++..+.+|...|++++|+|+++.++++|+.|+.|++||+.+++++..+.+|..   .|++++| +|+
T Consensus       148 d~~--~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~  217 (615)
T 1pgu_A          148 DSG--N-SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEF-SPD  217 (615)
T ss_dssp             TTC--C-EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEE-CST
T ss_pred             ECC--C-cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEE-CCC
Confidence            833  3 57889999999999999999987888999999999999999999999999999   9999999 985

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.84  E-value=2.9e-19  Score=184.62  Aligned_cols=189  Identities=17%  Similarity=0.295  Sum_probs=147.6

Q ss_pred             cCCCCcEEEEeeCCCcEEEEeCCCCCCCCCc------------------------cccccccCCCceeeeEEEecCCCCC
Q 005473          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDR------------------------VGRSAEVGKGFTFTEFQLIPASTSK  557 (695)
Q Consensus       502 l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~------------------------~~~~~d~~~~~~~~~v~~l~~H~~~  557 (695)
                      +....+++++|+.|++|++|+...+......                        ....+....  ....+..+.+|...
T Consensus        75 ~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  152 (318)
T 4ggc_A           75 WIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRV--AEHHVATLSGHSQE  152 (318)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTS--SSCEEEEEECCSSC
T ss_pred             ECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCC--CceeEEEEcCccCc
Confidence            3445589999999999999988655311100                        011111111  22455677899999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCe----EEEEecccCCCeEEEEEcCCCC-EE--EEEeCCCeEEEEECCCCC
Q 005473          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSLS-RL--ATSSADRTVRVWDTENPD  630 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~----~~~~l~~H~~~V~~v~~spdg~-~L--aTgs~DgtIrvWDl~t~~  630 (695)
                      +.++.|++++++|++++.|++|+|||+++++    .......|.+.|.++.++|++. .+  ++++.+++|++||.+...
T Consensus       153 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~  232 (318)
T 4ggc_A          153 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA  232 (318)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC
T ss_pred             eEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc
Confidence            9999999999999999999999999998765    3455677889999999999754 33  456778999999999865


Q ss_pred             eeEEEEecCCCCeEEEEEecCCCeEEEE-EeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCS-CDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       631 ~~l~~~~gh~~~V~sl~fspdg~~llaS-gs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      .  .....+...|..+.|+|++..++++ |+.|+.|+|||+++++++.++.+|.+.|++|+| +|+
T Consensus       233 ~--~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~-spd  295 (318)
T 4ggc_A          233 C--LSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTM-SPD  295 (318)
T ss_dssp             E--EEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEE-CTT
T ss_pred             c--cccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE-cCC
Confidence            4  3344567789999999999877654 347999999999999999999999999999999 986

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.84  E-value=2e-19  Score=198.37  Aligned_cols=174  Identities=13%  Similarity=0.082  Sum_probs=144.0

Q ss_pred             CCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC---CCEEEEEeCCCcE
Q 005473          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD---GKLLATGGHDKKA  579 (695)
Q Consensus       503 ~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspd---g~~LaSgs~Dg~V  579 (695)
                      .+...++++|+.|+.|.+|+........               ..+..+.+|...|++|+|+|+   +++|++|+.|++|
T Consensus       158 sp~~~~l~~~~~~g~v~~~~~~~~~~~~---------------~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i  222 (450)
T 2vdu_B          158 AEDDTTVIIADKFGDVYSIDINSIPEEK---------------FTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHI  222 (450)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTSCCCSS---------------CCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCE
T ss_pred             cCCCCEEEEEeCCCcEEEEecCCccccc---------------ccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcE
Confidence            3445789999999999999765432110               022345689999999999999   9999999999999


Q ss_pred             EEEECCCCeEEEE-ecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec--------------------
Q 005473          580 VLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG--------------------  638 (695)
Q Consensus       580 ~IWDl~t~~~~~~-l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~g--------------------  638 (695)
                      +|||+++++++.. +.+|...|.+++|+ ++.+|++++.|++|+|||+++++. +..+..                    
T Consensus       223 ~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (450)
T 2vdu_B          223 KISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKN-LSTFDYNSLIKPYLNDQHLAPPRFQN  300 (450)
T ss_dssp             EEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCE-EEEEECHHHHGGGCCTTSBC------
T ss_pred             EEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcE-eeeecchhhhhhhhhhcccccccccc
Confidence            9999999988877 56899999999999 999999999999999999998764 565542                    


Q ss_pred             -----CCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC--CCC---eEEEEEecCCCcEEEEEEeCCC
Q 005473          639 -----HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI--NNG---SCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       639 -----h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl--~tg---~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                           +...|.+++|+|++..+++++..|+.|+|||+  .++   +++..+.+| +.|.+++| +|+
T Consensus       301 ~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~-~~~  365 (450)
T 2vdu_B          301 ENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSA-HND  365 (450)
T ss_dssp             ----CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEE-ETT
T ss_pred             cccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEe-cCC
Confidence                 23579999999999866655548999999999  666   788888888 89999999 874

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.84  E-value=1.3e-19  Score=198.72  Aligned_cols=181  Identities=20%  Similarity=0.345  Sum_probs=151.2

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCCC------------------------CCCccccccccCCCceeeeEEEecCCCCCeEE
Q 005473          505 MDRFVDDGSLDDNVESFLSPDDAD------------------------PRDRVGRSAEVGKGFTFTEFQLIPASTSKVES  560 (695)
Q Consensus       505 ~~~~lasgS~D~~V~lw~~~~~~~------------------------~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~  560 (695)
                      .+.++++|+.|++|++|+...+..                        +.+...++|+...+........+.+|...|.+
T Consensus       182 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~  261 (435)
T 1p22_A          182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV  261 (435)
T ss_dssp             CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEE
Confidence            346788888888888887654321                        11233355655555444555778899999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC
Q 005473          561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS  640 (695)
Q Consensus       561 v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~  640 (695)
                      ++|  ++++|++|+.||.|+|||+++++++..+.+|...|.++.|+  +.+|++|+.||+|++||++++. ++..+.+|.
T Consensus       262 ~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~  336 (435)
T 1p22_A          262 VDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGA-CLRVLEGHE  336 (435)
T ss_dssp             EEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCC-EEEEECCCS
T ss_pred             EEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCC-EEEEEeCCc
Confidence            999  78899999999999999999999999999999999999995  6799999999999999999876 588999999


Q ss_pred             CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe---------EEEEEecCCCcEEEEEEeCC
Q 005473          641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---------CAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       641 ~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~---------~v~~~~~h~~~VtsVaf~sP  694 (695)
                      ..|.+++|  ++. +|++|+.||.|++||++++.         ++..+.+|.+.|++++| ++
T Consensus       337 ~~v~~~~~--~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~  395 (435)
T 1p22_A          337 ELVRCIRF--DNK-RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF-DE  395 (435)
T ss_dssp             SCEEEEEC--CSS-EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE-CS
T ss_pred             CcEEEEEe--cCC-EEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe-CC
Confidence            99999999  444 67799999999999998766         89999999999999998 54

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.83  E-value=4.6e-20  Score=222.48  Aligned_cols=172  Identities=13%  Similarity=0.130  Sum_probs=140.7

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEe-----cCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 005473          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-----PASTSKVESCHFSPDGKLLATGGHDKKA  579 (695)
Q Consensus       505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l-----~~H~~~V~~v~fspdg~~LaSgs~Dg~V  579 (695)
                      ..+++++|+.|++|++|+...+...   ..      ..+  .  ..+     .+|...|.+|+|+||+++||+|+.||+|
T Consensus       446 dg~~laSgs~DgtVrlWd~~~g~~~---~~------~~~--~--~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV  512 (902)
T 2oaj_A          446 YGTAFITGHSNGSVRIYDASHGDIQ---DN------ASF--E--VNLSRTLNKAKELAVDKISFAAETLELAVSIETGDV  512 (902)
T ss_dssp             EEEEEEEEETTSEEEEEESSCCTTT---TT------BCE--E--EEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCE
T ss_pred             cCcEEEEecCCCcEEEEECCCcccc---CC------ceE--E--eechhhcCCCCCCceeEEEecCCCCeEEEEecCcEE
Confidence            3579999999999999988655210   00      000  0  011     2899999999999999999999999999


Q ss_pred             EEEECCCC---------------------------------------------eEEEEecccCCCeEEEEEcCCCCEEEE
Q 005473          580 VLWCTESF---------------------------------------------TVKSTLEEHTQWITDVRFSPSLSRLAT  614 (695)
Q Consensus       580 ~IWDl~t~---------------------------------------------~~~~~l~~H~~~V~~v~~spdg~~LaT  614 (695)
                      +|||+.++                                             +++.++.+|.+.|++|+|+|+| +||+
T Consensus       513 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAs  591 (902)
T 2oaj_A          513 VLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGI  591 (902)
T ss_dssp             EEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEE
T ss_pred             EEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEE
Confidence            99999765                                             3467888999999999999999 9999


Q ss_pred             EeCCCeEEEEECCCCCeeEE-----EEe-cCCCCeEEEEEe-----cCC--CeEEEEEeCCCcEEEEEC---CCCeEEEE
Q 005473          615 SSADRTVRVWDTENPDYSLR-----TFT-GHSTTVMSLDFH-----PSK--EDLLCSCDNNSEIRYWSI---NNGSCAGV  678 (695)
Q Consensus       615 gs~DgtIrvWDl~t~~~~l~-----~~~-gh~~~V~sl~fs-----pdg--~~llaSgs~Dg~IriWDl---~tg~~v~~  678 (695)
                      |+.|++|+|||++++.. +.     .+. +|.+.|++|+|+     |||  ..+|++|+.|++|++||+   .+|+++..
T Consensus       592 gs~D~tv~lwd~~~~~~-~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~  670 (902)
T 2oaj_A          592 AYAAGSLMLIDRRGPAI-IYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQ  670 (902)
T ss_dssp             EETTSEEEEEETTTTEE-EEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEE
T ss_pred             EeCCCcEEEEECCCCeE-EEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEE
Confidence            99999999999987553 32     233 899999999999     987  357889999999999999   78999999


Q ss_pred             EecCC-----CcEEEEE-E
Q 005473          679 FKNFF-----ESFVSVR-V  691 (695)
Q Consensus       679 ~~~h~-----~~VtsVa-f  691 (695)
                      +.+|.     ++|.+|+ |
T Consensus       671 ~~~~~~~~~~~~v~~i~~~  689 (902)
T 2oaj_A          671 LMDITNVTSKGPIHKIDAF  689 (902)
T ss_dssp             EEEEEECCSSCCCCEEEEE
T ss_pred             ecCceecCCCCceEEEEeE
Confidence            88774     7888777 5

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.83  E-value=6.6e-19  Score=193.53  Aligned_cols=142  Identities=18%  Similarity=0.272  Sum_probs=126.3

Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 005473          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (695)
Q Consensus       546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWD  625 (695)
                      ..+..+.+|...|.+++|+|++++|++|+.|+.|+|||+++++++..+.+|...|.+++|+  +.+|++++.||+|++||
T Consensus       301 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd  378 (464)
T 3v7d_B          301 KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWD  378 (464)
T ss_dssp             EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred             cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEE
Confidence            5667788999999999999999999999999999999999999999999999999999997  57999999999999999


Q ss_pred             CCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEE-EecCCCcEEEEEEeCC
Q 005473          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FKNFFESFVSVRVVQP  694 (695)
Q Consensus       626 l~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~-~~~h~~~VtsVaf~sP  694 (695)
                      +++... ...+ .|...+..++|++++. ++++|+ ||.|++||+++++++.. +.+|.+.|++|+| ++
T Consensus       379 ~~~~~~-~~~~-~~~~~~~~~~~~~~~~-~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~-~~  443 (464)
T 3v7d_B          379 ANDYSR-KFSY-HHTNLSAITTFYVSDN-ILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNF-KG  443 (464)
T ss_dssp             TTTCCE-EEEE-ECTTCCCEEEEEECSS-EEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEE-ET
T ss_pred             CCCCce-eeee-cCCCCccEEEEEeCCC-EEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEe-cC
Confidence            998664 3333 3667788899999987 666777 89999999999999986 6689999999999 64

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.83  E-value=1.6e-19  Score=193.14  Aligned_cols=145  Identities=10%  Similarity=0.071  Sum_probs=117.5

Q ss_pred             eeEEEecCCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEECCCCeEEEEecccC---CCeEEEEEcCCCCEE-------
Q 005473          546 TEFQLIPASTSKVESCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT---QWITDVRFSPSLSRL-------  612 (695)
Q Consensus       546 ~~v~~l~~H~~~V~~v~fsp---dg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~---~~V~~v~~spdg~~L-------  612 (695)
                      +.+..+.+|...|+.++|++   ++.+|++|+.|++|+|||++++++++++.+|.   ..|.+++|+|++.++       
T Consensus       169 ~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~  248 (356)
T 2w18_A          169 GGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPC  248 (356)
T ss_dssp             CEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC---
T ss_pred             ceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCC
Confidence            34566778999999999999   78999999999999999999999999998754   467888999999876       


Q ss_pred             -----EEEeCCCeEEEEECCCCCeeEEEE-----ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecC
Q 005473          613 -----ATSSADRTVRVWDTENPDYSLRTF-----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF  682 (695)
Q Consensus       613 -----aTgs~DgtIrvWDl~t~~~~l~~~-----~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h  682 (695)
                           ++|+.|++|++||..+++. +.++     .+|...+.+.+++  +. ++++|+.|++|+|||+.+++++.++++|
T Consensus       249 ~~w~laSGs~D~tIklWd~~tgk~-l~v~~~~~p~Gh~~~~lsg~~s--g~-~lASgS~DgTIkIWDl~tGk~l~tL~gH  324 (356)
T 2w18_A          249 AKESESLRSPVFQLIVINPKTTLS-VGVMLYCLPPGQAGRFLEGDVK--DH-CAAAILTSGTIAIWDLLLGQCTALLPPV  324 (356)
T ss_dssp             ---------CCEEEEEEETTTTEE-EEEEEECCCTTCCCCEEEEEEE--TT-EEEEEETTSCEEEEETTTCSEEEEECCC
T ss_pred             CcceeeccCCCcEEEEEECCCCEE-EEEEEeeccCCCcceeEccccC--CC-EEEEEcCCCcEEEEECCCCcEEEEecCC
Confidence                 5688999999999998654 5554     4777666555555  44 7889999999999999999999999999


Q ss_pred             CCcEE-EEEEeCCC
Q 005473          683 FESFV-SVRVVQPR  695 (695)
Q Consensus       683 ~~~Vt-sVaf~sPd  695 (695)
                      .+.|. +++| +||
T Consensus       325 ~~~vvs~vaf-SPD  337 (356)
T 2w18_A          325 SDQHWSFVKW-SGT  337 (356)
T ss_dssp             --CCCCEEEE-CSS
T ss_pred             CCCeEEEEEE-CCC
Confidence            87665 5899 996

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.83  E-value=5e-20  Score=195.54  Aligned_cols=164  Identities=11%  Similarity=0.025  Sum_probs=133.9

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005473          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (695)
Q Consensus       505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl  584 (695)
                      ...++++|+.|++|++|+...+.                   .+..+.  ...|.++.|+|+   +++|+.|++|++|+.
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~~-------------------~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~  102 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDSK-------------------TITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYP  102 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSSS-------------------CEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEET
T ss_pred             CCCEEEEECCCCcEEEEECCCCc-------------------EEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEc
Confidence            34789999999999999765432                   111121  345778888888   999999999999976


Q ss_pred             C---------CCeEEEEe-cccCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCeeEEEE-ecCCCCeEEEEEecC
Q 005473          585 E---------SFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPS  651 (695)
Q Consensus       585 ~---------t~~~~~~l-~~H~~~V~~v~~sp--dg~~LaTgs~DgtIrvWDl~t~~~~l~~~-~gh~~~V~sl~fspd  651 (695)
                      .         +++.+..+ .+|.+.|.+++|+|  ++.+|++++.||+|++||+++++. +..+ ..|...|++++|+|+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~~pd  181 (343)
T 3lrv_A          103 GNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-YIVHSAKSDVEYSSGVLHKD  181 (343)
T ss_dssp             TTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-EEEECCCSSCCCCEEEECTT
T ss_pred             cCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-EEEEecCCCCceEEEEECCC
Confidence            5         45544444 36778999999999  999999999999999999998765 5555 345668999999999


Q ss_pred             CCeEEEEEeCCCcEEEEECCCCeEE-EEEec-CCCcEEEEEEeCCC
Q 005473          652 KEDLLCSCDNNSEIRYWSINNGSCA-GVFKN-FFESFVSVRVVQPR  695 (695)
Q Consensus       652 g~~llaSgs~Dg~IriWDl~tg~~v-~~~~~-h~~~VtsVaf~sPd  695 (695)
                      +. +|++|+.||.|++||+++++++ ..+.+ |.++|++|+| +|+
T Consensus       182 g~-~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~f-s~~  225 (343)
T 3lrv_A          182 SL-LLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKF-ADN  225 (343)
T ss_dssp             SC-EEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEE-CTT
T ss_pred             CC-EEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEE-eCC
Confidence            87 7789999999999999999988 88888 9999999999 986

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.83  E-value=8.6e-19  Score=192.19  Aligned_cols=161  Identities=19%  Similarity=0.378  Sum_probs=142.9

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      .++++|+.|+.|++|+...+                   ..+..+.+|.+.|.+++|  ++++|++|+.||+|+|||+.+
T Consensus       144 ~~l~~g~~dg~i~iwd~~~~-------------------~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~  202 (435)
T 1p22_A          144 QKIVSGLRDNTIKIWDKNTL-------------------ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT  202 (435)
T ss_dssp             SEEEEEESSSCEEEEESSSC-------------------CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred             CEEEEEeCCCeEEEEeCCCC-------------------eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence            78999999999999965332                   345678899999999999  788999999999999999999


Q ss_pred             CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee--EEEEecCCCCeEEEEEecCCCeEEEEEeCCCc
Q 005473          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (695)
Q Consensus       587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~--l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~  664 (695)
                      ++++..+.+|...|.+++|++  .+|++|+.||+|++||++++...  ...+.+|...|.+++|  ++. ++++|+.||.
T Consensus       203 ~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~s~~~dg~  277 (435)
T 1p22_A          203 GEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDK-YIVSASGDRT  277 (435)
T ss_dssp             CCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETT-EEEEEETTSE
T ss_pred             CcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCC-EEEEEeCCCe
Confidence            999999999999999999974  59999999999999999886642  2678899999999999  444 6779999999


Q ss_pred             EEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          665 IRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       665 IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      |++||+++++++..+.+|...|.+++| ++
T Consensus       278 i~vwd~~~~~~~~~~~~~~~~v~~~~~-~~  306 (435)
T 1p22_A          278 IKVWNTSTCEFVRTLNGHKRGIACLQY-RD  306 (435)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEE-ET
T ss_pred             EEEEECCcCcEEEEEcCCCCcEEEEEe-CC
Confidence            999999999999999999999999998 54

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.83  E-value=4.5e-19  Score=218.85  Aligned_cols=201  Identities=25%  Similarity=0.367  Sum_probs=162.5

Q ss_pred             cccCCCCCceEEEEecCCCccccc--------cCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCcee
Q 005473          474 LQHNGASSKSLLMFGSDGMGSLTS--------APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF  545 (695)
Q Consensus       474 l~~s~s~~~s~l~~~~dg~~~la~--------s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~  545 (695)
                      ...+++.+..+..|.......+..        ..-.+.+..+++++|+.|++|++|+...+                   
T Consensus       629 ~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~-------------------  689 (1249)
T 3sfz_A          629 RIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG-------------------  689 (1249)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-------------------
T ss_pred             EEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC-------------------
Confidence            334455666677776544311110        11113344589999999999999976433                   


Q ss_pred             eeEEEecCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 005473          546 TEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV  623 (695)
Q Consensus       546 ~~v~~l~~H~~~V~~v~fsp--dg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrv  623 (695)
                      ..+..+.+|...|.+++|++  ++.++++|+.|+.|+|||+++++++..+.+|.+.|++++|+|++.+|++++.||+|++
T Consensus       690 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~v  769 (1249)
T 3sfz_A          690 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL  769 (1249)
T ss_dssp             CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEE
T ss_pred             ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEE
Confidence            35667789999999999999  5568999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCCee-----------------------------------------------------EE-EEecCCCCeEEEEEe
Q 005473          624 WDTENPDYS-----------------------------------------------------LR-TFTGHSTTVMSLDFH  649 (695)
Q Consensus       624 WDl~t~~~~-----------------------------------------------------l~-~~~gh~~~V~sl~fs  649 (695)
                      ||++++...                                                     +. ...+|...|.+++|+
T Consensus       770 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~s  849 (1249)
T 3sfz_A          770 WDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS  849 (1249)
T ss_dssp             EEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEEC
T ss_pred             EeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEc
Confidence            998764320                                                     01 112788899999999


Q ss_pred             cCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       650 pdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      |++. ++++++.||.|++||+.++.++..+.+|.+.|++++| +|+
T Consensus       850 p~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~-spd  893 (1249)
T 3sfz_A          850 PYDH-LAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMF-SPD  893 (1249)
T ss_dssp             SSTT-EEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEE-CTT
T ss_pred             CCCC-EEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEE-CCC
Confidence            9988 6779999999999999999999999999999999999 985

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.83  E-value=1.4e-19  Score=213.83  Aligned_cols=172  Identities=17%  Similarity=0.288  Sum_probs=146.9

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEE
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKKAVLWC  583 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspd--g~~LaSgs~Dg~V~IWD  583 (695)
                      ..++++|+.|+.|++|+...+                 ....+..+.+|...|++++|+|+  +++|++|+.||.|+|||
T Consensus        67 ~~~l~s~s~Dg~I~vwd~~~~-----------------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwd  129 (753)
T 3jro_A           67 GTILASCSYDGKVLIWKEENG-----------------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE  129 (753)
T ss_dssp             CSEEEEEETTSCEEEEEEETT-----------------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCC-----------------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEE
Confidence            478999999999999965322                 23466778899999999999999  99999999999999999


Q ss_pred             CCCC--eEEEEecccCCCeEEEEEcC-------------CCCEEEEEeCCCeEEEEECCCCC---eeEEEEecCCCCeEE
Q 005473          584 TESF--TVKSTLEEHTQWITDVRFSP-------------SLSRLATSSADRTVRVWDTENPD---YSLRTFTGHSTTVMS  645 (695)
Q Consensus       584 l~t~--~~~~~l~~H~~~V~~v~~sp-------------dg~~LaTgs~DgtIrvWDl~t~~---~~l~~~~gh~~~V~s  645 (695)
                      +++.  .....+.+|...|.+++|+|             ++.+|++|+.||+|++||++++.   .++..+.+|.+.|++
T Consensus       130 l~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~  209 (753)
T 3jro_A          130 FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD  209 (753)
T ss_dssp             CCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE
T ss_pred             eecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEE
Confidence            9877  34556788999999999999             58999999999999999998764   456788899999999


Q ss_pred             EEEecCC--CeEEEEEeCCCcEEEEECCCCe-----EEEEEecCCCcEEEEEEeCCC
Q 005473          646 LDFHPSK--EDLLCSCDNNSEIRYWSINNGS-----CAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       646 l~fspdg--~~llaSgs~Dg~IriWDl~tg~-----~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ++|+|++  ..++++|+.||.|++||++++.     .+....+|.+.|++++| +|+
T Consensus       210 l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~-spd  265 (753)
T 3jro_A          210 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW-SLS  265 (753)
T ss_dssp             EEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEE-CTT
T ss_pred             EEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEE-cCC
Confidence            9999994  4478899999999999999864     33444568999999999 985

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.83  E-value=1.7e-19  Score=188.61  Aligned_cols=179  Identities=13%  Similarity=0.067  Sum_probs=149.2

Q ss_pred             CCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 005473          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (695)
Q Consensus       477 s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~  556 (695)
                      .+...+..+.|++++               .++++++.|+.|++|+.....                .......+.+|..
T Consensus         9 ~h~~~v~~~~~s~~~---------------~~l~~~~~d~~v~iw~~~~~~----------------~~~~~~~~~~~~~   57 (342)
T 1yfq_A            9 APKDYISDIKIIPSK---------------SLLLITSWDGSLTVYKFDIQA----------------KNVDLLQSLRYKH   57 (342)
T ss_dssp             CCSSCEEEEEEEGGG---------------TEEEEEETTSEEEEEEEETTT----------------TEEEEEEEEECSS
T ss_pred             CCCCcEEEEEEcCCC---------------CEEEEEcCCCeEEEEEeCCCC----------------ccccceeeeecCC
Confidence            455678899999876               688999999999999764331                1123345568999


Q ss_pred             CeEEEEEcCCCC-EEEEEeCCCcEEEEEC-CCCeEEEEecc--cCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC----
Q 005473          557 KVESCHFSPDGK-LLATGGHDKKAVLWCT-ESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTEN----  628 (695)
Q Consensus       557 ~V~~v~fspdg~-~LaSgs~Dg~V~IWDl-~t~~~~~~l~~--H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t----  628 (695)
                      .|.+++|+|+++ +|++|+.||.|++||+ .+++. ..+.+  |...|.+++|+| +.+|++++.|+.|++||+++    
T Consensus        58 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~  135 (342)
T 1yfq_A           58 PLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDG  135 (342)
T ss_dssp             CEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTB
T ss_pred             ceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccc
Confidence            999999999999 9999999999999999 87755 67888  999999999999 99999999999999999986    


Q ss_pred             -----CCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-Ce--EEEEEecCCCcEEEEEEeCC
Q 005473          629 -----PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GS--CAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       629 -----~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t-g~--~v~~~~~h~~~VtsVaf~sP  694 (695)
                           .. ++..+. |...|.+++|+|++   +++++.|+.|++||+++ +.  .......|...|++|+| +|
T Consensus       136 ~~~~~~~-~~~~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~-~~  203 (342)
T 1yfq_A          136 VIAVKNL-NSNNTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVAL-LP  203 (342)
T ss_dssp             CEEEEES-CSSSSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEE-CS
T ss_pred             cccccCC-eeeEEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEE-CC
Confidence                 44 244555 88999999999885   66889999999999998 54  33455578899999999 88

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.83  E-value=6.1e-19  Score=199.25  Aligned_cols=171  Identities=13%  Similarity=0.155  Sum_probs=148.0

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCC----CcEEEE
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD----KKAVLW  582 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~D----g~V~IW  582 (695)
                      +++++|+.|+.|++|+...+.           .........+..+..|...|.+++|+|++++|++++.|    +.|++|
T Consensus        79 ~~l~s~~~dg~v~vw~~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~  147 (615)
T 1pgu_A           79 QYLCSGDESGKVIVWGWTFDK-----------ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISW  147 (615)
T ss_dssp             CEEEEEETTSEEEEEEEEEEG-----------GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEET
T ss_pred             CEEEEecCCCEEEEEeCCCCc-----------ccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEE
Confidence            789999999999999663220           00011335567788899999999999999999999988    688888


Q ss_pred             ECCCCeEEEEecccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeEEEEecCCC---CeEEEEEecC-CCeEEE
Q 005473          583 CTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHST---TVMSLDFHPS-KEDLLC  657 (695)
Q Consensus       583 Dl~t~~~~~~l~~H~~~V~~v~~spdg~-~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~---~V~sl~fspd-g~~lla  657 (695)
                      |  .++.+..+.+|...|++++|+|++. +|++++.|+.|++||+.+.+ ++..+.+|..   .|++++|+|+ +. +|+
T Consensus       148 d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~  223 (615)
T 1pgu_A          148 D--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK-FSASDRTHHKQGSFVRDVEFSPDSGE-FVI  223 (615)
T ss_dssp             T--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE-EEEEECSSSCTTCCEEEEEECSTTCC-EEE
T ss_pred             E--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc-eeeeecccCCCCceEEEEEECCCCCC-EEE
Confidence            8  5678889999999999999999987 89999999999999998855 5888999999   9999999999 76 677


Q ss_pred             EEeCCCcEEEEECCCCeEEEEE-e---cCCCcEEEEEEeC
Q 005473          658 SCDNNSEIRYWSINNGSCAGVF-K---NFFESFVSVRVVQ  693 (695)
Q Consensus       658 Sgs~Dg~IriWDl~tg~~v~~~-~---~h~~~VtsVaf~s  693 (695)
                      +|+.||.|++||+++++++..+ .   +|...|++++| +
T Consensus       224 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~-~  262 (615)
T 1pgu_A          224 TVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW-L  262 (615)
T ss_dssp             EEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEE-S
T ss_pred             EEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEE-c
Confidence            9999999999999999999999 6   89999999999 5

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.82  E-value=4.1e-19  Score=201.15  Aligned_cols=171  Identities=11%  Similarity=0.144  Sum_probs=141.4

Q ss_pred             CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCC-
Q 005473          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS-  556 (695)
Q Consensus       478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~-  556 (695)
                      +...+..+.|+|+|               .++++++.|++|++|+..                     ..+..+. |.. 
T Consensus        84 ~~~~V~~vawSPdG---------------~~LAs~s~dg~V~iwd~~---------------------~~l~~l~-~~~~  126 (588)
T 2j04_A           84 PVCYPRVCKPSPID---------------DWMAVLSNNGNVSVFKDN---------------------KMLTNLD-SKGN  126 (588)
T ss_dssp             CSCCEEEEEECSSS---------------SCEEEEETTSCEEEEETT---------------------EEEEECC-CSSC
T ss_pred             CCCcEEEEEECCCC---------------CEEEEEeCCCcEEEEeCC---------------------ceeeecc-CCCc
Confidence            35688999999988               678999999999999521                     1444455 554 


Q ss_pred             ----CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-------EEEEe----cccCCCeEEEEEcCCCCEEEEEeCCCeE
Q 005473          557 ----KVESCHFSPDGKLLATGGHDKKAVLWCTESFT-------VKSTL----EEHTQWITDVRFSPSLSRLATSSADRTV  621 (695)
Q Consensus       557 ----~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~-------~~~~l----~~H~~~V~~v~~spdg~~LaTgs~DgtI  621 (695)
                          .|.+++|||||++||+|+.||+|+|||+.++.       .+.++    .+|...|.+++|+|+|  +++++.|++|
T Consensus       127 ~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tV  204 (588)
T 2j04_A          127 LSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSV  204 (588)
T ss_dssp             STTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCE
T ss_pred             cccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeE
Confidence                49999999999999999999999999999875       35676    6788999999999998  8888999999


Q ss_pred             EEEECCCCCe--eEEEE-ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473          622 RVWDTENPDY--SLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       622 rvWDl~t~~~--~l~~~-~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf  691 (695)
                      ++||+.....  ...++ .+|...|.+|+|+  |. .+++++ +++|++||+.+++......+|.+.|..|+|
T Consensus       205 rlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~-~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~  273 (588)
T 2j04_A          205 FSMTVSASSHQPVSRMIQNASRRKITDLKIV--DY-KVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPL  273 (588)
T ss_dssp             EEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TT-EEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEE
T ss_pred             EEEECCCCccccceeeecccccCcEEEEEEE--CC-EEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEe
Confidence            9999987663  23566 4788999999999  44 666776 699999999988775444489999999987

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.82  E-value=1.7e-18  Score=178.77  Aligned_cols=167  Identities=17%  Similarity=0.288  Sum_probs=142.1

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      ++|++| .|++|++|+...+.                 ......+.+|...|+||+|+|++++|++|+.||+|+|||+++
T Consensus        37 ~~lAvg-~D~tV~iWd~~tg~-----------------~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~   98 (318)
T 4ggc_A           37 NVLAVA-LDNSVYLWSASSGD-----------------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ   98 (318)
T ss_dssp             SEEEEE-ETTEEEEEETTTCC-----------------EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             CEEEEE-eCCEEEEEECCCCC-----------------EEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCC
Confidence            356665 59999999764431                 122234567888999999999999999999999999999999


Q ss_pred             CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEE
Q 005473          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (695)
Q Consensus       587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~Ir  666 (695)
                      ++++..+.+|...+.++.+.  +..|++++.++.+++|+.......+..+.+|...+.++.|++++. ++++++.|+.|+
T Consensus        99 ~~~~~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~  175 (318)
T 4ggc_A           99 QKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVN  175 (318)
T ss_dssp             TEEEEEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEE
T ss_pred             ceeEEEecCccceEEEeecC--CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC-EEEEEecCccee
Confidence            99999999999998887665  579999999999999999988877889999999999999999988 667999999999


Q ss_pred             EEECCCCe----EEEEEecCCCcEEEEEEeCCC
Q 005473          667 YWSINNGS----CAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       667 iWDl~tg~----~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +||+++++    .+.....|.+.|.+++| +|+
T Consensus       176 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~  207 (318)
T 4ggc_A          176 VWPSAPGEGGWVPLQTFTQHQGAVKAVAW-CPW  207 (318)
T ss_dssp             EEESSCBTTBSCCSEEECCCCSCEEEEEE-CTT
T ss_pred             EEECCCCcccccceeeecccCCceEEEEe-cCC
Confidence            99998765    34666688899999998 763

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.82  E-value=3e-19  Score=186.78  Aligned_cols=163  Identities=11%  Similarity=0.040  Sum_probs=140.0

Q ss_pred             c-EEEEeeCCCcEEEEeC-CCCCCCCCccccccccCCCceeeeEEEecC--CCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005473          507 R-FVDDGSLDDNVESFLS-PDDADPRDRVGRSAEVGKGFTFTEFQLIPA--STSKVESCHFSPDGKLLATGGHDKKAVLW  582 (695)
Q Consensus       507 ~-~lasgS~D~~V~lw~~-~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~--H~~~V~~v~fspdg~~LaSgs~Dg~V~IW  582 (695)
                      . ++++|+.|+.|++|+. ..+                    ....+.+  |...|.+++|++ +++|++++.|+.|++|
T Consensus        69 ~~~l~~~~~dg~i~~wd~~~~~--------------------~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iw  127 (342)
T 1yfq_A           69 DLQIYVGTVQGEILKVDLIGSP--------------------SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVI  127 (342)
T ss_dssp             SEEEEEEETTSCEEEECSSSSS--------------------SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEE
T ss_pred             CcEEEEEcCCCeEEEEEeccCC--------------------ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEE
Confidence            7 8999999999999965 332                    1255677  999999999999 9999999999999999


Q ss_pred             ECCC---------CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-CCe-eEEEEecCCCCeEEEEEec-
Q 005473          583 CTES---------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-PDY-SLRTFTGHSTTVMSLDFHP-  650 (695)
Q Consensus       583 Dl~t---------~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t-~~~-~l~~~~gh~~~V~sl~fsp-  650 (695)
                      |+++         ++++..+. |...|.+++|+|++  |++++.|+.|++||+++ +.. .......|...|.+++|+| 
T Consensus       128 d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~  204 (342)
T 1yfq_A          128 DPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPK  204 (342)
T ss_dssp             CHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSG
T ss_pred             cccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCC
Confidence            9987         66666666 89999999999886  99999999999999998 543 2345567888999999999 


Q ss_pred             CCCeEEEEEeCCCcEEEEECCCC------eEEEEEecCCC---------cEEEEEEeCCC
Q 005473          651 SKEDLLCSCDNNSEIRYWSINNG------SCAGVFKNFFE---------SFVSVRVVQPR  695 (695)
Q Consensus       651 dg~~llaSgs~Dg~IriWDl~tg------~~v~~~~~h~~---------~VtsVaf~sPd  695 (695)
                      ++. ++++|+.||.|++||++.+      +++..+.+|..         .|++++| +|+
T Consensus       205 ~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~  262 (342)
T 1yfq_A          205 EQE-GYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF-SPR  262 (342)
T ss_dssp             GGC-EEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEE-CTT
T ss_pred             CCC-EEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEE-cCC
Confidence            887 6778999999999999887      88899998866         9999999 985

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.82  E-value=1.8e-18  Score=189.70  Aligned_cols=138  Identities=24%  Similarity=0.405  Sum_probs=70.3

Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 005473          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (695)
Q Consensus       546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWD  625 (695)
                      ..+..+.+|...|.+++|  ++++|++|+.||+|++||+++++++..+.+|...|.+++|  ++.+|++|+.|+.|++||
T Consensus       190 ~~~~~~~~h~~~v~~~~~--~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd  265 (445)
T 2ovr_B          190 ECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWD  265 (445)
T ss_dssp             EEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEE
T ss_pred             cEEEEECCCCCcEEEEEe--cCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEE
Confidence            444445555555555554  2555555555555555555555555555555555555554  555555555555555555


Q ss_pred             CCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       626 l~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf  691 (695)
                      ++++. ++..+.+|...|.+++|  ++. ++++|+.||.|++||+++++++..+.+|...|.++.+
T Consensus       266 ~~~~~-~~~~~~~~~~~v~~~~~--~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~  327 (445)
T 2ovr_B          266 PETET-CLHTLQGHTNRVYSLQF--DGI-HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL  327 (445)
T ss_dssp             GGGTE-EEEEECCCSSCEEEEEE--CSS-EEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE
T ss_pred             CCCCc-EeEEecCCCCceEEEEE--CCC-EEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE
Confidence            55432 34555555555555554  332 5555555555555555555555555555555555544

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.81  E-value=2e-18  Score=189.38  Aligned_cols=162  Identities=22%  Similarity=0.451  Sum_probs=142.9

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~  585 (695)
                      ..++++|+.|++|++|+...+                   ..+..+.+|...|.++.|  ++++|++|+.||.|++||++
T Consensus       209 ~~~l~s~s~dg~i~~wd~~~~-------------------~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~  267 (445)
T 2ovr_B          209 EKRVVSGSRDATLRVWDIETG-------------------QCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPE  267 (445)
T ss_dssp             TTEEEEEETTSEEEEEESSSC-------------------CEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGG
T ss_pred             CCEEEEEeCCCEEEEEECCCC-------------------cEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECC
Confidence            466788888888888865332                   345677899999999999  78899999999999999999


Q ss_pred             CCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcE
Q 005473          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (695)
Q Consensus       586 t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~I  665 (695)
                      +++++..+.+|...|.+++|  ++.+|++|+.|++|++||+++++ ++..+.+|...|.++.+++  . ++++|+.||.|
T Consensus       268 ~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~--~-~l~~~~~dg~i  341 (445)
T 2ovr_B          268 TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGN-CIHTLTGHQSLTSGMELKD--N-ILVSGNADSTV  341 (445)
T ss_dssp             GTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCC-EEEEECCCCSCEEEEEEET--T-EEEEEETTSCE
T ss_pred             CCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCC-EEEEEcCCcccEEEEEEeC--C-EEEEEeCCCeE
Confidence            99999999999999999999  78899999999999999999876 4889999999999998864  3 77799999999


Q ss_pred             EEEECCCCeEEEEEec---CCCcEEEEEEeCCC
Q 005473          666 RYWSINNGSCAGVFKN---FFESFVSVRVVQPR  695 (695)
Q Consensus       666 riWDl~tg~~v~~~~~---h~~~VtsVaf~sPd  695 (695)
                      ++||+++++++..+.+   |...|++++| +++
T Consensus       342 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~  373 (445)
T 2ovr_B          342 KIWDIKTGQCLQTLQGPNKHQSAVTCLQF-NKN  373 (445)
T ss_dssp             EEEETTTCCEEEEECSTTSCSSCEEEEEE-CSS
T ss_pred             EEEECCCCcEEEEEccCCCCCCCEEEEEE-CCC
Confidence            9999999999999986   8899999999 763

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.81  E-value=9.5e-19  Score=187.26  Aligned_cols=143  Identities=9%  Similarity=0.057  Sum_probs=113.7

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCC---CCeEEEEEcCCCCEE-----------
Q 005473          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST---SKVESCHFSPDGKLL-----------  570 (695)
Q Consensus       505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~---~~V~~v~fspdg~~L-----------  570 (695)
                      ...++++|+.|++|++|+...+                   .+++++.+|.   ..|.+++|+|+|+++           
T Consensus       192 ~~~~LaSgS~D~TIkIWDl~TG-------------------k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~  252 (356)
T 2w18_A          192 MQEALLGTTIMNNIVIWNLKTG-------------------QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKES  252 (356)
T ss_dssp             STTEEEEEETTSEEEEEETTTC-------------------CEEEEEECCC---CCCEEEEEEETTEEEEEEC-------
T ss_pred             CCceEEEecCCCcEEEEECCCC-------------------cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcce
Confidence            4488999999999999976543                   3455565543   468888999999876           


Q ss_pred             -EEEeCCCcEEEEECCCCeEEEEe-----cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeE
Q 005473          571 -ATGGHDKKAVLWCTESFTVKSTL-----EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM  644 (695)
Q Consensus       571 -aSgs~Dg~V~IWDl~t~~~~~~l-----~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~  644 (695)
                       ++|+.|++|++||..+++++.++     .+|...+.+.+++  +.++++|+.|++|+|||+.+++ ++.++.+|...|.
T Consensus       253 laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk-~l~tL~gH~~~vv  329 (356)
T 2w18_A          253 ESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQ-CTALLPPVSDQHW  329 (356)
T ss_dssp             -----CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCS-EEEEECCC--CCC
T ss_pred             eeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCc-EEEEecCCCCCeE
Confidence             66889999999999999988766     4777776666555  7899999999999999999977 5899999987665


Q ss_pred             -EEEEecCCCeEEEEEeCCCcEEEEEC
Q 005473          645 -SLDFHPSKEDLLCSCDNNSEIRYWSI  670 (695)
Q Consensus       645 -sl~fspdg~~llaSgs~Dg~IriWDl  670 (695)
                       +++|+|||+ +|++|+.|++|+|||+
T Consensus       330 s~vafSPDG~-~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          330 SFVKWSGTDS-HLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CEEEECSSSS-EEEEECTTSCEEEEEE
T ss_pred             EEEEECCCCC-EEEEEECCCcEEEecC
Confidence             689999998 6779999999999996

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.79  E-value=5.4e-18  Score=181.68  Aligned_cols=178  Identities=10%  Similarity=0.131  Sum_probs=138.1

Q ss_pred             CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 005473          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (695)
Q Consensus       478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~  557 (695)
                      +...+.++.|++++               .++++|+.| .+++|+....                   ..+....  ...
T Consensus        18 h~~~V~~v~fs~dg---------------~~la~g~~~-~~~iw~~~~~-------------------~~~~~~~--~~~   60 (355)
T 3vu4_A           18 VSNPVTDYEFNQDQ---------------SCLILSTLK-SFEIYNVHPV-------------------AHIMSQE--MRH   60 (355)
T ss_dssp             -CCCCCEEEECTTS---------------SEEEEECSS-EEEEEEETTE-------------------EEEEEEE--CSC
T ss_pred             CCCceEEEEECCCC---------------CEEEEEcCC-EEEEEecCCc-------------------ceeeeee--cCC
Confidence            45578888998877               678888766 4789964221                   1111111  124


Q ss_pred             eEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCC---------------------------
Q 005473          558 VESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---------------------------  609 (695)
Q Consensus       558 V~~v~fspdg~~L-aSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg---------------------------  609 (695)
                      +..++|.++++++ ++++.|++|+|||+.+++++..+. |...|.+++|+++.                           
T Consensus        61 ~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~  139 (355)
T 3vu4_A           61 LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRF  139 (355)
T ss_dssp             CCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEE
T ss_pred             eEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccC
Confidence            7889999988877 567778999999999999998886 66789999888752                           


Q ss_pred             --------CEEEE--EeCCCeEEEEECCCCC--------------ee-EEEEecCCCCeEEEEEecCCCeEEEEEeCCCc
Q 005473          610 --------SRLAT--SSADRTVRVWDTENPD--------------YS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (695)
Q Consensus       610 --------~~LaT--gs~DgtIrvWDl~t~~--------------~~-l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~  664 (695)
                              .++++  |+.||.|++||++++.              .+ +..+.+|.+.|++++|+|+|. +|++|+.|++
T Consensus       140 ~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~-~l~s~s~d~~  218 (355)
T 3vu4_A          140 GGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD-MVATCSQDGT  218 (355)
T ss_dssp             EEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSS-EEEEEETTCS
T ss_pred             CceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC-EEEEEeCCCC
Confidence                    23333  4678889999988754              11 678899999999999999987 7779999998


Q ss_pred             -EEEEECCCCeEEEEEe-c-CCCcEEEEEEeCCC
Q 005473          665 -IRYWSINNGSCAGVFK-N-FFESFVSVRVVQPR  695 (695)
Q Consensus       665 -IriWDl~tg~~v~~~~-~-h~~~VtsVaf~sPd  695 (695)
                       |+|||+++++++..+. + |...|++|+| +|+
T Consensus       219 ~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~-s~~  251 (355)
T 3vu4_A          219 IIRVFKTEDGVLVREFRRGLDRADVVDMKW-STD  251 (355)
T ss_dssp             EEEEEETTTCCEEEEEECTTCCSCEEEEEE-CTT
T ss_pred             EEEEEECCCCcEEEEEEcCCCCCcEEEEEE-CCC
Confidence             9999999999999998 5 9999999999 986

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.79  E-value=2.4e-18  Score=180.51  Aligned_cols=144  Identities=17%  Similarity=0.324  Sum_probs=125.7

Q ss_pred             eeeeEEEecCCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEECCC-CeEE-EEecccCCCeEEEEEcCCCCEEEEEeCC
Q 005473          544 TFTEFQLIPASTSKVESCHFSPD---GKLLATGGHDKKAVLWCTES-FTVK-STLEEHTQWITDVRFSPSLSRLATSSAD  618 (695)
Q Consensus       544 ~~~~v~~l~~H~~~V~~v~fspd---g~~LaSgs~Dg~V~IWDl~t-~~~~-~~l~~H~~~V~~v~~spdg~~LaTgs~D  618 (695)
                      ....+..+.+|.+.|+||+|+|+   |++|++|+.||.|+|||+++ +..+ ..+.+|...|++++|+|++.+|++++.|
T Consensus        28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d  107 (368)
T 3mmy_A           28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD  107 (368)
T ss_dssp             TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred             CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence            33566778999999999999999   69999999999999999987 5544 7888999999999999999999999999


Q ss_pred             CeEEEEECCCCCeeEEEEecCCCCeEEEEE--ecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDF--HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       619 gtIrvWDl~t~~~~l~~~~gh~~~V~sl~f--spdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf  691 (695)
                      |.|++||++++..  ..+.+|...|++++|  +|++. +|++|+.||.|++||+++++++..+..|. .+.++.+
T Consensus       108 g~v~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~  178 (368)
T 3mmy_A          108 KTAKMWDLSSNQA--IQIAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADV  178 (368)
T ss_dssp             SEEEEEETTTTEE--EEEEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEE
T ss_pred             CcEEEEEcCCCCc--eeeccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEe
Confidence            9999999998653  346679999999999  77776 67799999999999999999999998775 5566665

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.78  E-value=1.1e-17  Score=179.22  Aligned_cols=111  Identities=24%  Similarity=0.295  Sum_probs=94.5

Q ss_pred             EEEEEcCCCCEEEE--EeCCCcEEEEECCCCe----------------EEEEecccCCCeEEEEEcCCCCEEEEEeCCCe
Q 005473          559 ESCHFSPDGKLLAT--GGHDKKAVLWCTESFT----------------VKSTLEEHTQWITDVRFSPSLSRLATSSADRT  620 (695)
Q Consensus       559 ~~v~fspdg~~LaS--gs~Dg~V~IWDl~t~~----------------~~~~l~~H~~~V~~v~~spdg~~LaTgs~Dgt  620 (695)
                      ..+++++  .+++.  |+.||.|+|||++++.                ++..+.+|.+.|++++|+|++.+|++|+.|++
T Consensus       141 ~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~  218 (355)
T 3vu4_A          141 GVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGT  218 (355)
T ss_dssp             EEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCS
T ss_pred             ceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCC
Confidence            3455555  55655  5789999999998765                26788999999999999999999999999998


Q ss_pred             -EEEEECCCCCeeEEEEe-c-CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 005473          621 -VRVWDTENPDYSLRTFT-G-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG  673 (695)
Q Consensus       621 -IrvWDl~t~~~~l~~~~-g-h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg  673 (695)
                       |+|||++++.. +..+. + |...|.+++|+|++. +|++|+.|++|+|||++.+
T Consensus       219 ~v~iwd~~~~~~-~~~~~~g~h~~~v~~~~~s~~~~-~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          219 IIRVFKTEDGVL-VREFRRGLDRADVVDMKWSTDGS-KLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             EEEEEETTTCCE-EEEEECTTCCSCEEEEEECTTSC-EEEEEETTCEEEEEESSCC
T ss_pred             EEEEEECCCCcE-EEEEEcCCCCCcEEEEEECCCCC-EEEEEECCCEEEEEEccCC
Confidence             99999998764 77787 6 999999999999988 6779999999999999765

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.78  E-value=1.7e-18  Score=191.83  Aligned_cols=139  Identities=14%  Similarity=0.119  Sum_probs=117.2

Q ss_pred             CCCCCeEEEEEcCCCCEEE----EEeCCCcEEEEECCCC--------e---EEEEecccCCCeEEEEEcCC-CCEEEEEe
Q 005473          553 ASTSKVESCHFSPDGKLLA----TGGHDKKAVLWCTESF--------T---VKSTLEEHTQWITDVRFSPS-LSRLATSS  616 (695)
Q Consensus       553 ~H~~~V~~v~fspdg~~La----Sgs~Dg~V~IWDl~t~--------~---~~~~l~~H~~~V~~v~~spd-g~~LaTgs  616 (695)
                      .|...|.+|+|+++|++|+    +|+.|++|+|||+++.        +   .+..+.+|...|.+++|+|+ +.+|++++
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s  169 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL  169 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence            4677899999999999999    7888999999998654        2   24556789999999999997 78999999


Q ss_pred             CCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCC-------CcEEEE
Q 005473          617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFF-------ESFVSV  689 (695)
Q Consensus       617 ~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~-------~~VtsV  689 (695)
                      .||+|++||++++. ++....+|...|++++|+|+|. +|++|+.||.|++||++ ++....+..|.       ..|.+|
T Consensus       170 ~Dg~v~iwD~~~~~-~~~~~~~~~~~v~~v~wspdg~-~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v  246 (434)
T 2oit_A          170 ADGSIAVLQVTETV-KVCATLPSTVAVTSVCWSPKGK-QLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDV  246 (434)
T ss_dssp             TTSCEEEEEESSSE-EEEEEECGGGCEEEEEECTTSS-CEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEE
T ss_pred             CCCeEEEEEcCCCc-ceeeccCCCCceeEEEEcCCCC-EEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEE
Confidence            99999999999864 4566677889999999999988 56689999999999998 66777666543       388999


Q ss_pred             EEeCCC
Q 005473          690 RVVQPR  695 (695)
Q Consensus       690 af~sPd  695 (695)
                      +| +|+
T Consensus       247 ~w-~~~  251 (434)
T 2oit_A          247 LW-IGT  251 (434)
T ss_dssp             EE-EET
T ss_pred             EE-ecC
Confidence            99 653

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.77  E-value=1.2e-18  Score=189.27  Aligned_cols=138  Identities=18%  Similarity=0.188  Sum_probs=107.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-----EecccCCCeEEEEEcC--------CCCEEEEEeCCC
Q 005473          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-----TLEEHTQWITDVRFSP--------SLSRLATSSADR  619 (695)
Q Consensus       553 ~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~-----~l~~H~~~V~~v~~sp--------dg~~LaTgs~Dg  619 (695)
                      .|...+....+.+++.+|++|+.|++|+|||++++.+..     .+.+|.+.|.+|+|+|        ++.+|+||+.|+
T Consensus        87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~  166 (393)
T 4gq1_A           87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC  166 (393)
T ss_dssp             ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred             ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence            344445555566677899999999999999999876543     3579999999999998        788999999999


Q ss_pred             eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEE--------------------
Q 005473          620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--------------------  679 (695)
Q Consensus       620 tIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~--------------------  679 (695)
                      +|+|||++++.. +..+.+|...|.+++|+|++..+|++|+.|++|++||+++++.....                    
T Consensus       167 tv~~Wd~~~~~~-~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~  245 (393)
T 4gq1_A          167 TLIIWRLTDEGP-ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV  245 (393)
T ss_dssp             EEEEEEEETTEE-EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred             eEEEEECCCCce-eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence            999999987654 66777788999999999998888999999999999999987654332                    


Q ss_pred             -----ecCCCcEEEEEE
Q 005473          680 -----KNFFESFVSVRV  691 (695)
Q Consensus       680 -----~~h~~~VtsVaf  691 (695)
                           .+|...|.+++|
T Consensus       246 ~~~~~~~~~~~v~~v~~  262 (393)
T 4gq1_A          246 NTCHSSGIASSLANVRW  262 (393)
T ss_dssp             ------CCSSSCSEEEE
T ss_pred             eeeecccccccceeeee
Confidence                 367777888887

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.75  E-value=1.8e-16  Score=169.67  Aligned_cols=164  Identities=17%  Similarity=0.163  Sum_probs=136.2

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE  585 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~L-aSgs~Dg~V~IWDl~  585 (695)
                      .++++++.|+.|++|+...+                   ..+..+..|. .+.+++|+|++++| ++++.|+.|++||+.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~-------------------~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~   62 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSN-------------------KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTA   62 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTT-------------------EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred             EEEEEcCCCCEEEEEECCCC-------------------eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence            56888999999999966432                   3444556665 48999999999976 667789999999999


Q ss_pred             CCeEEEEecccCCCeEEEEEcCCCCEEEE-EeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc
Q 005473          586 SFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (695)
Q Consensus       586 t~~~~~~l~~H~~~V~~v~~spdg~~LaT-gs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~  664 (695)
                      +++++..+..|. .|.+++|+|++++|+. ++.|+.|++||+.+++. +..+..| ..+.+++|+|+++.++++++.|+.
T Consensus        63 ~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~-~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~  139 (391)
T 1l0q_A           63 TNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV-AGTVKTG-KSPLGLALSPDGKKLYVTNNGDKT  139 (391)
T ss_dssp             TTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEECS-SSEEEEEECTTSSEEEEEETTTTE
T ss_pred             CCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeE-EEEEeCC-CCcceEEECCCCCEEEEEeCCCCE
Confidence            999998887655 8999999999998754 55679999999998654 6666644 578999999999988789999999


Q ss_pred             EEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          665 IRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       665 IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      |++||+++++++..+..|. .+.+++| +|+
T Consensus       140 v~~~d~~~~~~~~~~~~~~-~~~~~~~-~~d  168 (391)
T 1l0q_A          140 VSVINTVTKAVINTVSVGR-SPKGIAV-TPD  168 (391)
T ss_dssp             EEEEETTTTEEEEEEECCS-SEEEEEE-CTT
T ss_pred             EEEEECCCCcEEEEEecCC-CcceEEE-CCC
Confidence            9999999999999998774 5689999 885

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.75  E-value=3.6e-16  Score=167.22  Aligned_cols=164  Identities=18%  Similarity=0.197  Sum_probs=133.5

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTE  585 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs-~Dg~V~IWDl~  585 (695)
                      .++++++.|+.|++|+...+                   ..+..+..|. .|.+++|+|++++|+.++ .|+.|++||+.
T Consensus        45 ~l~~~~~~d~~i~v~d~~~~-------------------~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~  104 (391)
T 1l0q_A           45 KVYVANAHSNDVSIIDTATN-------------------NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTT  104 (391)
T ss_dssp             EEEEEEGGGTEEEEEETTTT-------------------EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             EEEEECCCCCeEEEEECCCC-------------------eEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECC
Confidence            34578889999999965332                   2334444444 799999999999876554 67999999999


Q ss_pred             CCeEEEEecccCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCc
Q 005473          586 SFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (695)
Q Consensus       586 t~~~~~~l~~H~~~V~~v~~spdg~~L-aTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~  664 (695)
                      +++.+..+..| ..+.+++|+|++++| ++++.|+.|++||+++++. +..+..| ..+.+++|+|+++.++++++.|+.
T Consensus       105 ~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~  181 (391)
T 1l0q_A          105 SNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV-INTVSVG-RSPKGIAVTPDGTKVYVANFDSMS  181 (391)
T ss_dssp             TTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEECC-SSEEEEEECTTSSEEEEEETTTTE
T ss_pred             CCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE-EEEEecC-CCcceEEECCCCCEEEEEeCCCCE
Confidence            99998888754 568999999999977 7888899999999998654 6666655 567999999999988789999999


Q ss_pred             EEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          665 IRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       665 IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      |++||+++++++..+.. ...+.+++| +|+
T Consensus       182 v~~~d~~~~~~~~~~~~-~~~~~~~~~-~~~  210 (391)
T 1l0q_A          182 ISVIDTVTNSVIDTVKV-EAAPSGIAV-NPE  210 (391)
T ss_dssp             EEEEETTTTEEEEEEEC-SSEEEEEEE-CTT
T ss_pred             EEEEECCCCeEEEEEec-CCCccceEE-CCC
Confidence            99999999999888864 467899999 885

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.74  E-value=2.1e-16  Score=171.44  Aligned_cols=166  Identities=8%  Similarity=0.053  Sum_probs=139.4

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEC
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCT  584 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs-~Dg~V~IWDl  584 (695)
                      ..++++++.|+.|++|+....                   ..+..+..|...+.+++|+|+++++++++ .|+.|++||+
T Consensus       181 ~~~~~s~~~d~~v~~~d~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~  241 (433)
T 3bws_A          181 NELWVSQMQANAVHVFDLKTL-------------------AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDR  241 (433)
T ss_dssp             TEEEEEEGGGTEEEEEETTTC-------------------CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CEEEEEECCCCEEEEEECCCc-------------------eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEEC
Confidence            478899999999999966332                   24455668888999999999999886555 7999999999


Q ss_pred             CCCeEEEEecccCCCeEEEEEcCCCCEEEEEe--------CCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEE
Q 005473          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSS--------ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL  656 (695)
Q Consensus       585 ~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs--------~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~ll  656 (695)
                      ++++.+..+..+ ..+.+++|+|++.+|++++        .|+.|++||+++++. +..+ .|...+.+++|+|+++.++
T Consensus       242 ~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~-~~~~-~~~~~~~~~~~~~~g~~l~  318 (433)
T 3bws_A          242 KTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL-IDTI-GPPGNKRHIVSGNTENKIY  318 (433)
T ss_dssp             TTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEE-EEEE-EEEECEEEEEECSSTTEEE
T ss_pred             CCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcE-Eeec-cCCCCcceEEECCCCCEEE
Confidence            999998888764 4599999999999999887        588999999998653 4443 4566899999999999888


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          657 CSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       657 aSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ++++.|+.|++||+.+++++..+. +...+.+++| +|+
T Consensus       319 ~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~-s~d  355 (433)
T 3bws_A          319 VSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIAL-SPD  355 (433)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEE-CTT
T ss_pred             EEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEE-cCC
Confidence            899999999999999999998886 6678899999 885

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.71  E-value=2.4e-16  Score=171.01  Aligned_cols=172  Identities=9%  Similarity=0.054  Sum_probs=138.2

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~  585 (695)
                      ..++++++.|+.|++|+...+...              .......+.+|.+.|.+++|+++++++++++.|+.|++||++
T Consensus       134 ~~~~~~~~~~~~i~~~d~~~g~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~  199 (433)
T 3bws_A          134 TRLAIPLLEDEGMDVLDINSGQTV--------------RLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLK  199 (433)
T ss_dssp             SEEEEEBTTSSSEEEEETTTCCEE--------------EECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETT
T ss_pred             CeEEEEeCCCCeEEEEECCCCeEe--------------eecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECC
Confidence            377888888999999976543210              000111346889999999999999999999999999999999


Q ss_pred             CCeEEEEecccCCCeEEEEEcCCCCEEEE-EeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEe----
Q 005473          586 SFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD----  660 (695)
Q Consensus       586 t~~~~~~l~~H~~~V~~v~~spdg~~LaT-gs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs----  660 (695)
                      +++.+..+..|...+.+++|+|++.++++ ++.|+.|++||+++++. +..+..+ ..+.+++|+|++..+++++.    
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~  277 (433)
T 3bws_A          200 TLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE-IRKTDKI-GLPRGLLLSKDGKELYIAQFSASN  277 (433)
T ss_dssp             TCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE-EEECCCC-SEEEEEEECTTSSEEEEEEEESCT
T ss_pred             CceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE-EEEecCC-CCceEEEEcCCCCEEEEEECCCCc
Confidence            99999999999999999999999998854 45799999999998653 6666654 56999999999986664443    


Q ss_pred             ---CCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          661 ---NNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       661 ---~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                         .|+.|++||+++++.+..+ .|...+.+++| +|+
T Consensus       278 ~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~-~~~  313 (433)
T 3bws_A          278 QESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVS-GNT  313 (433)
T ss_dssp             TCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEE-CSS
T ss_pred             cccCCCeEEEEECCCCcEEeec-cCCCCcceEEE-CCC
Confidence               5889999999999888776 45568899999 885

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.71  E-value=1.4e-16  Score=176.54  Aligned_cols=170  Identities=11%  Similarity=0.053  Sum_probs=131.1

Q ss_pred             CCCceEEEEecCCCccccccCCccCCCCcEEE----EeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 005473          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVD----DGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS  554 (695)
Q Consensus       479 s~~~s~l~~~~dg~~~la~s~~~l~~~~~~la----sgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H  554 (695)
                      ...+..+.|++++               ++++    +|+.|++|++|+......+.        ......+..+..+.+|
T Consensus        92 ~~~v~~l~~spdg---------------~~lav~~~sgs~d~~v~iwd~~~~~~~~--------~~~~~~~~~~~~~~~h  148 (434)
T 2oit_A           92 KFPIHHLALSCDN---------------LTLSACMMSSEYGSIIAFFDVRTFSNEA--------KQQKRPFAYHKLLKDA  148 (434)
T ss_dssp             SSCEEEEEECTTS---------------CEEEEEEEETTTEEEEEEEEHHHHHCTT--------CSSCCCSEEEECCCSG
T ss_pred             CCcccEEEEcCCC---------------CEEEEEEeccCCCceEEEEEccccccCC--------cCCcceeeeeeccCCC
Confidence            3457778888776               5566    89999999999764321000        0001122345667789


Q ss_pred             CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE
Q 005473          555 TSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (695)
Q Consensus       555 ~~~V~~v~fspd-g~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l  633 (695)
                      ...|.+|+|+|+ +.+|++|+.||+|+|||++++..+....+|...|++++|+|++.+|++|+.||+|++||++ +.. .
T Consensus       149 ~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~-~  226 (434)
T 2oit_A          149 GGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQE-K  226 (434)
T ss_dssp             GGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCE-E
T ss_pred             CCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccc-c
Confidence            999999999998 8899999999999999999988777778899999999999999999999999999999998 333 4


Q ss_pred             EEEecCC-------CCeEEEEEecCCCeEEEEEeCCCc------EEEEECCCC
Q 005473          634 RTFTGHS-------TTVMSLDFHPSKEDLLCSCDNNSE------IRYWSINNG  673 (695)
Q Consensus       634 ~~~~gh~-------~~V~sl~fspdg~~llaSgs~Dg~------IriWDl~tg  673 (695)
                      ..+..|.       ..|.+++|++++..+++++..||.      +++||+++.
T Consensus       227 ~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          227 KVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             ccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            5554442       379999999988766666666643      899999864

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.67  E-value=7.2e-15  Score=161.27  Aligned_cols=175  Identities=14%  Similarity=0.117  Sum_probs=134.9

Q ss_pred             CCceEEEEecCCCccccccCCccCCCCcEEEEeeCCC---cEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 005473          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDD---NVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (695)
Q Consensus       480 ~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~---~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~  556 (695)
                      ..+..+.|+|++               +.++.++.|+   .|++|+...+.                    ...+..|..
T Consensus       179 ~~v~~~~~Spdg---------------~~la~~s~~~~~~~i~~~d~~tg~--------------------~~~l~~~~~  223 (415)
T 2hqs_A          179 QPLMSPAWSPDG---------------SKLAYVTFESGRSALVIQTLANGA--------------------VRQVASFPR  223 (415)
T ss_dssp             SCEEEEEECTTS---------------SEEEEEECTTSSCEEEEEETTTCC--------------------EEEEECCSS
T ss_pred             CcceeeEEcCCC---------------CEEEEEEecCCCcEEEEEECCCCc--------------------EEEeecCCC
Confidence            356667777766               6678887775   88888654321                    124556778


Q ss_pred             CeEEEEEcCCCCEEE-EEeCCCc--EEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEECCCCC
Q 005473          557 KVESCHFSPDGKLLA-TGGHDKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWDTENPD  630 (695)
Q Consensus       557 ~V~~v~fspdg~~La-Sgs~Dg~--V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~-Dg--tIrvWDl~t~~  630 (695)
                      .+.+++|+|||++|+ +++.|+.  |++||+.++++ ..+..|...+.+++|+|++++|++++. ++  .|++||+.++.
T Consensus       224 ~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~  302 (415)
T 2hqs_A          224 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA  302 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred             cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC
Confidence            899999999999877 6666655  99999998776 577788899999999999999988876 44  68888998765


Q ss_pred             eeEEEEecCCCCeEEEEEecCCCeEEEEEeCC--CcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       631 ~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D--g~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                        +..+..|...+.+++|+|+|+.+++++..+  ..|++||+.++++. .+..|. .+.+++| +|+
T Consensus       303 --~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~-spd  364 (415)
T 2hqs_A          303 --PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSL-APN  364 (415)
T ss_dssp             --CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEE-CTT
T ss_pred             --EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEE-cCC
Confidence              355566777899999999999766555543  58999999988774 455564 8899999 986

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.65  E-value=7e-15  Score=161.35  Aligned_cols=142  Identities=20%  Similarity=0.197  Sum_probs=117.5

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEE-EEeCCCe--EE
Q 005473          549 QLIPASTSKVESCHFSPDGKLLATGGHDK---KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRT--VR  622 (695)
Q Consensus       549 ~~l~~H~~~V~~v~fspdg~~LaSgs~Dg---~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~La-Tgs~Dgt--Ir  622 (695)
                      ..+.+|...|.+++|+|||++|++++.|+   .|++||+.++++. .+..|.+.+.+++|+|+|++|+ +++.|+.  |+
T Consensus       172 ~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~  250 (415)
T 2hqs_A          172 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY  250 (415)
T ss_dssp             EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred             EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEE
Confidence            45567888999999999999999999885   9999999998875 5667888999999999999887 6666654  99


Q ss_pred             EEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       623 vWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg--~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +||++++.  +..+..|...+.+++|+|||+.+++++..++  .|++||+.++++ ..+..|...+.+++| +|+
T Consensus       251 ~~d~~~~~--~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~-spd  321 (415)
T 2hqs_A          251 VMDLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADV-SSD  321 (415)
T ss_dssp             EEETTTCC--EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEE-CTT
T ss_pred             EEECCCCC--EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEE-CCC
Confidence            99999865  3677788889999999999997776665555  677889988764 455667788999999 986

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.62  E-value=1.4e-14  Score=146.33  Aligned_cols=166  Identities=12%  Similarity=0.101  Sum_probs=124.3

Q ss_pred             cEEEEeeCCCcEEEEeCCC-CCCCCCccccccccCCCceeeeEEEecCC-CCCeEEEEEcCCCCEEEEEeC--CCcEEEE
Q 005473          507 RFVDDGSLDDNVESFLSPD-DADPRDRVGRSAEVGKGFTFTEFQLIPAS-TSKVESCHFSPDGKLLATGGH--DKKAVLW  582 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~-~~~~~~~~~~~~d~~~~~~~~~v~~l~~H-~~~V~~v~fspdg~~LaSgs~--Dg~V~IW  582 (695)
                      +++++++ ++.|.+|+... +.                   .......| ...|.+++|+|++++|++++.  ++.+.||
T Consensus        54 ~~l~~~~-~~~i~~~d~~~~~~-------------------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~  113 (297)
T 2ojh_A           54 KYLLLNS-EGLLYRLSLAGDPS-------------------PEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIY  113 (297)
T ss_dssp             SEEEEEE-TTEEEEEESSSCCS-------------------CEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEE
T ss_pred             CEEEEEc-CCeEEEEeCCCCCC-------------------ceEeccccccccccceEECCCCCEEEEEEeCCCCcceEE
Confidence            5667665 78999997644 21                   11222333 467899999999999999993  3455555


Q ss_pred             --ECCCCeEEEEecccCCCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEE
Q 005473          583 --CTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC  659 (695)
Q Consensus       583 --Dl~t~~~~~~l~~H~~~V~~v~~spdg~~La-Tgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSg  659 (695)
                        |+.++. ...+..+ ..+.+++|+|++++|+ +++.|+.++||+++........+..|...+.+++|+|+++.+++++
T Consensus       114 ~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  191 (297)
T 2ojh_A          114 LLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNS  191 (297)
T ss_dssp             EEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEE
T ss_pred             EEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEe
Confidence              545544 3445443 3489999999999876 7788999999997543333567777888999999999999777777


Q ss_pred             eCCCcEEEEECC-CCeEEEEEecCCCcEEEEEEeCCC
Q 005473          660 DNNSEIRYWSIN-NGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       660 s~Dg~IriWDl~-tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ..|+.++||+++ .+..+..+..|...+.+++| +|+
T Consensus       192 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-s~d  227 (297)
T 2ojh_A          192 SRTGQMQIWRVRVDGSSVERITDSAYGDWFPHP-SPS  227 (297)
T ss_dssp             CTTSSCEEEEEETTSSCEEECCCCSEEEEEEEE-CTT
T ss_pred             cCCCCccEEEECCCCCCcEEEecCCcccCCeEE-CCC
Confidence            779999999987 56778888888889999999 986

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.58  E-value=3e-14  Score=143.94  Aligned_cols=161  Identities=14%  Similarity=0.109  Sum_probs=122.4

Q ss_pred             EEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-Ce
Q 005473          510 DDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FT  588 (695)
Q Consensus       510 asgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t-~~  588 (695)
                      ..++.|+.|++|+...+                    ....+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++
T Consensus        16 ~~~~~~~~i~~~d~~~~--------------------~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~   74 (297)
T 2ojh_A           16 PGGSMRSSIEIFNIRTR--------------------KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS   74 (297)
T ss_dssp             --CCCCEEEEEEETTTT--------------------EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS
T ss_pred             CCCCcceeEEEEeCCCC--------------------ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC
Confidence            34567888999965332                    1223455788899999999999999987 78999999999 88


Q ss_pred             EEEEeccc-CCCeEEEEEcCCCCEEEEEe--CCCeEEEE--ECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC
Q 005473          589 VKSTLEEH-TQWITDVRFSPSLSRLATSS--ADRTVRVW--DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (695)
Q Consensus       589 ~~~~l~~H-~~~V~~v~~spdg~~LaTgs--~DgtIrvW--Dl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg  663 (695)
                      ....+..| ...|.+++|+|++++|++++  .++.++||  |+.++.  ...+..+. .+.+++|+|+++.++++++.|+
T Consensus        75 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~  151 (297)
T 2ojh_A           75 PEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT--PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQ  151 (297)
T ss_dssp             CEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC--CEECCSSS-SEEEEEECTTSSEEEEEEEETT
T ss_pred             ceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc--eEEeecCC-CccceEECCCCCEEEEEECCCC
Confidence            77666666 47889999999999999998  33455555  545433  45555443 4899999999998887888999


Q ss_pred             cEEEEECCC-CeEEEEEecCCCcEEEEEEeCCC
Q 005473          664 EIRYWSINN-GSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       664 ~IriWDl~t-g~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      .++||+++. +..+..+..|...+.+++| +|+
T Consensus       152 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-s~d  183 (297)
T 2ojh_A          152 VFDIYSMDIDSGVETRLTHGEGRNDGPDY-SPD  183 (297)
T ss_dssp             EEEEEEEETTTCCEEECCCSSSCEEEEEE-CTT
T ss_pred             ceEEEEEECCCCcceEcccCCCccccceE-CCC
Confidence            999999642 3455667788889999999 985

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.57  E-value=5.1e-13  Score=139.91  Aligned_cols=158  Identities=12%  Similarity=0.113  Sum_probs=126.2

Q ss_pred             CCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 005473          514 LDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL  593 (695)
Q Consensus       514 ~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l  593 (695)
                      .++.|.+|+....                   ..+..+..+...+.+++|+|+|++|++++.++.|.+||+.+++.+..+
T Consensus       162 ~~~~i~~~d~~~~-------------------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~  222 (353)
T 3vgz_A          162 KESVIWVVDGGNI-------------------KLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRK  222 (353)
T ss_dssp             SSCEEEEEETTTT-------------------EEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             CCceEEEEcCCCC-------------------ceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEE
Confidence            4777888865322                   233444445556889999999999999999999999999999988777


Q ss_pred             cc----cCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEE
Q 005473          594 EE----HTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW  668 (695)
Q Consensus       594 ~~----H~~~V~~v~~spdg~~LaTgs~-DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriW  668 (695)
                      ..    +...+.+++|+|++++|++++. ++.|++||+.+++. +..+....  ..+++|+|+++.+++++..++.|.+|
T Consensus       223 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~  299 (353)
T 3vgz_A          223 KLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI-LAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVI  299 (353)
T ss_dssp             ECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE-EEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE-EEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEE
Confidence            54    5667889999999998776655 59999999998765 55555433  36799999999888888789999999


Q ss_pred             ECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          669 SINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       669 Dl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      |+.+++.+..+..+. .+.+++| +|+
T Consensus       300 d~~~~~~~~~~~~~~-~~~~~~~-s~d  324 (353)
T 3vgz_A          300 DAKSYKVVKTFDTPT-HPNSLAL-SAD  324 (353)
T ss_dssp             ETTTTEEEEEEECCS-EEEEEEE-CTT
T ss_pred             ECCCCeEEEEEecCC-CCCeEEE-cCC
Confidence            999999998887654 6789999 886

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.56  E-value=4.4e-13  Score=140.42  Aligned_cols=134  Identities=12%  Similarity=0.123  Sum_probs=113.1

Q ss_pred             eEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE
Q 005473          558 VESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs--~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~  635 (695)
                      +.+++|+|+++++++++  .++.|.+||+.+++.+..+..+...+.+++|+|++++|++++.++.|.+||+.+++. +..
T Consensus       143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~-~~~  221 (353)
T 3vgz_A          143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKI-LSR  221 (353)
T ss_dssp             EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEE-EEE
T ss_pred             CceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeE-EEE
Confidence            68999999999887776  478999999999999988876677789999999999999999999999999998664 554


Q ss_pred             Eec----CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          636 FTG----HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       636 ~~g----h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +..    +...+.+++|+|+++.+++++..++.|.+||+.+++.+..+..+..  ..++| +|+
T Consensus       222 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~-s~d  282 (353)
T 3vgz_A          222 KKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLF-NPA  282 (353)
T ss_dssp             EECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEEE-ETT
T ss_pred             EEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEE-CCC
Confidence            443    5567889999999998887777789999999999999988875442  56888 775

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.54  E-value=3.5e-13  Score=153.57  Aligned_cols=165  Identities=9%  Similarity=0.014  Sum_probs=134.1

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC--
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT--  584 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl--  584 (695)
                      .++++++.|++|.+|+...+                   ..+.++..+.. +.+++|+|||++|++++.|++|++||+  
T Consensus       150 ~~~vs~~~d~~V~v~D~~t~-------------------~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~  209 (543)
T 1nir_A          150 LFSVTLRDAGQIALVDGDSK-------------------KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWA  209 (543)
T ss_dssp             EEEEEEGGGTEEEEEETTTC-------------------CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred             EEEEEEcCCCeEEEEECCCc-------------------eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcC
Confidence            67888999999999965332                   23455553333 899999999999999999999999999  


Q ss_pred             CCCeEEEEecccCCCeEEEEEcC----CCCEEEEEeC-CCeEEEEECCCCCeeEEEEec----------C-CCCeEEEEE
Q 005473          585 ESFTVKSTLEEHTQWITDVRFSP----SLSRLATSSA-DRTVRVWDTENPDYSLRTFTG----------H-STTVMSLDF  648 (695)
Q Consensus       585 ~t~~~~~~l~~H~~~V~~v~~sp----dg~~LaTgs~-DgtIrvWDl~t~~~~l~~~~g----------h-~~~V~sl~f  648 (695)
                      .+++++.++. +...+..++|+|    ++++|++++. +++|.|||..+.+. +.++..          | ...|.++.|
T Consensus       210 ~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~-~~~i~~~g~~~~~~~~~~~~~v~~i~~  287 (543)
T 1nir_A          210 KEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP-KQIVSTRGMTVDTQTYHPEPRVAAIIA  287 (543)
T ss_dssp             SSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE-EEEEECCEECSSSCCEESCCCEEEEEE
T ss_pred             CCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc-ceeecccCcccCccccccCCceEEEEE
Confidence            8899888887 455689999999    9999999884 89999999998664 666653          2 237899999


Q ss_pred             ecCCCeEEEEEeCCCcEEEEECCCCeEEE--EEecCCCcEEEEEEeCCC
Q 005473          649 HPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       649 spdg~~llaSgs~Dg~IriWDl~tg~~v~--~~~~h~~~VtsVaf~sPd  695 (695)
                      +|+++.+++++..++.|.+||+.+++++.  .+ .+...+..++| +|+
T Consensus       288 s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~-spd  334 (543)
T 1nir_A          288 SHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGW-DSS  334 (543)
T ss_dssp             CSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEE-CTT
T ss_pred             CCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceE-CCC
Confidence            99999999999999999999998876544  44 35566788999 885

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.52  E-value=6.6e-13  Score=137.99  Aligned_cols=171  Identities=13%  Similarity=0.168  Sum_probs=119.7

Q ss_pred             cEEEEeeCC-CcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEC
Q 005473          507 RFVDDGSLD-DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCT  584 (695)
Q Consensus       507 ~~lasgS~D-~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~-Dg~V~IWDl  584 (695)
                      +++++++.+ +.|.+|+....               ......+..+..+. .+.+++|+|++++|++++. ++.|++||+
T Consensus        50 ~~l~~~~~~~~~v~~~~~~~~---------------~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~  113 (343)
T 1ri6_A           50 RYLYVGVRPEFRVLAYRIAPD---------------DGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL  113 (343)
T ss_dssp             SEEEEEETTTTEEEEEEECTT---------------TCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CEEEEeecCCCeEEEEEecCC---------------CCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence            666666665 89999966421               11123344444444 6899999999998877765 889999999


Q ss_pred             ---CCCeEEEEecccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCC-CCee-EE--EEec-CCCCeEEEEEecCCCeE
Q 005473          585 ---ESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTEN-PDYS-LR--TFTG-HSTTVMSLDFHPSKEDL  655 (695)
Q Consensus       585 ---~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs-~DgtIrvWDl~t-~~~~-l~--~~~g-h~~~V~sl~fspdg~~l  655 (695)
                         ...+.+..+..+ ..+.+++|+|++++|++++ .|+.|++||+.+ ++.. +.  .+.. ....+.+++|+|++..+
T Consensus       114 ~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l  192 (343)
T 1ri6_A          114 EDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA  192 (343)
T ss_dssp             ETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE
T ss_pred             CCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEE
Confidence               444455555543 4588999999999888877 899999999987 4321 11  2232 34578899999999988


Q ss_pred             EEEEeCCCcEEEEECCC--CeE--EEEEe---cC---CCcEEEEEEeCCC
Q 005473          656 LCSCDNNSEIRYWSINN--GSC--AGVFK---NF---FESFVSVRVVQPR  695 (695)
Q Consensus       656 laSgs~Dg~IriWDl~t--g~~--v~~~~---~h---~~~VtsVaf~sPd  695 (695)
                      ++++..++.|++||++.  ++.  +..+.   .+   ...+.+++| +|+
T Consensus       193 ~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~-s~d  241 (343)
T 1ri6_A          193 YCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHI-TPD  241 (343)
T ss_dssp             EEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE-CTT
T ss_pred             EEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEE-CCC
Confidence            87887899999999953  432  33333   11   235678999 885

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.52  E-value=9.3e-13  Score=137.30  Aligned_cols=167  Identities=12%  Similarity=0.089  Sum_probs=123.1

Q ss_pred             EEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEEC
Q 005473          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK---KAVLWCT  584 (695)
Q Consensus       508 ~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg---~V~IWDl  584 (695)
                      +++++..++.|.+|+...+.                .  ....+..+..++.+++|+|+|++|+++..++   .|.+||+
T Consensus        54 l~~~~~~~~~i~~~d~~~~~----------------~--~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~  115 (331)
T 3u4y_A           54 VVVTSDFCQTLVQIETQLEP----------------P--KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSF  115 (331)
T ss_dssp             EEEEESTTCEEEEEECSSSS----------------C--EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEET
T ss_pred             EEEEeCCCCeEEEEECCCCc----------------e--eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEEC
Confidence            44444457888888654321                0  1344455666666699999999999555553   8999999


Q ss_pred             CCCeEEEEecccCCCeEEEEEcCCCCEEE-EEeCCCe-EEEEECCCCCeeE---EEEecCCCCeEEEEEecCCCeEEEEE
Q 005473          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRT-VRVWDTENPDYSL---RTFTGHSTTVMSLDFHPSKEDLLCSC  659 (695)
Q Consensus       585 ~t~~~~~~l~~H~~~V~~v~~spdg~~La-Tgs~Dgt-IrvWDl~t~~~~l---~~~~gh~~~V~sl~fspdg~~llaSg  659 (695)
                      .+++.+..+.. ...+.+++|+|++++|+ ++..++. |++|+++......   .....+...+.+++|+|+|+.+++++
T Consensus       116 ~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~  194 (331)
T 3u4y_A          116 LKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVAN  194 (331)
T ss_dssp             TTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEE
T ss_pred             CCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEe
Confidence            99998887765 44568999999998554 4556688 9999998654321   12223445689999999999888888


Q ss_pred             eCCCcEEEEECCCCeE---EEEEecCCCcEEEEEEeCCC
Q 005473          660 DNNSEIRYWSINNGSC---AGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       660 s~Dg~IriWDl~tg~~---v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ..++.|++||+.+++.   +..+..+ ..+..++| +|+
T Consensus       195 ~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~-spd  231 (331)
T 3u4y_A          195 LIGNSIGILETQNPENITLLNAVGTN-NLPGTIVV-SRD  231 (331)
T ss_dssp             TTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEE-CTT
T ss_pred             CCCCeEEEEECCCCcccceeeeccCC-CCCceEEE-CCC
Confidence            8899999999999988   8888755 56688999 886

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.52  E-value=1.2e-12  Score=136.32  Aligned_cols=166  Identities=11%  Similarity=0.070  Sum_probs=125.1

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTE  585 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~-Dg~V~IWDl~  585 (695)
                      .++++++.++.|.+|+...+                   ..+..+..+...+ +++|+|+|++|++++. ++.|++||+.
T Consensus        11 ~~~v~~~~~~~v~~~d~~~~-------------------~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~   70 (331)
T 3u4y_A           11 FGIVVEQHLRRISFFSTDTL-------------------EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQ   70 (331)
T ss_dssp             EEEEEEGGGTEEEEEETTTC-------------------CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECS
T ss_pred             EEEEEecCCCeEEEEeCccc-------------------ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECC
Confidence            56788889999999966433                   1223334455556 9999999997777666 8999999999


Q ss_pred             CCeE-EEEecccCCCeEEEEEcCCCCEEEEEeCCC---eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeC
Q 005473          586 SFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (695)
Q Consensus       586 t~~~-~~~l~~H~~~V~~v~~spdg~~LaTgs~Dg---tIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~  661 (695)
                      +++. ...+..+..++.+++|+|++++|+++..++   .|++||+.+++. +..+.. ...+.+++|+|+|+.+++++..
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~~~spdg~~l~~~~~~  148 (331)
T 3u4y_A           71 LEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF-ISTIPI-PYDAVGIAISPNGNGLILIDRS  148 (331)
T ss_dssp             SSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE-EEEEEC-CTTEEEEEECTTSSCEEEEEET
T ss_pred             CCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCe-EEEEEC-CCCccceEECCCCCEEEEEecC
Confidence            9887 777777777776699999999999655553   899999998654 566554 4557999999999988888887


Q ss_pred             CCc-EEEEECCCCeEE----EEEecCCCcEEEEEEeCCC
Q 005473          662 NSE-IRYWSINNGSCA----GVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       662 Dg~-IriWDl~tg~~v----~~~~~h~~~VtsVaf~sPd  695 (695)
                      ++. |++|++.....+    .....+...+..++| +|+
T Consensus       149 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-spd  186 (331)
T 3u4y_A          149 SANTVRRFKIDADGVLFDTGQEFISGGTRPFNITF-TPD  186 (331)
T ss_dssp             TTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEE-CTT
T ss_pred             CCceEEEEEECCCCcEeecCCccccCCCCccceEE-CCC
Confidence            788 999999864332    122233455789999 886

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.51  E-value=1.4e-12  Score=148.56  Aligned_cols=161  Identities=11%  Similarity=0.084  Sum_probs=126.6

Q ss_pred             CCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC----CCCEEEEEeC-CC
Q 005473          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP----DGKLLATGGH-DK  577 (695)
Q Consensus       503 ~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fsp----dg~~LaSgs~-Dg  577 (695)
                      .+..+++++++.|++|.+|+....                 +...+..+.. ...+..++|+|    ||++|++++. ++
T Consensus       187 spdg~~l~v~~~d~~V~v~D~~~~-----------------t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~  248 (543)
T 1nir_A          187 SASGRYLLVIGRDARIDMIDLWAK-----------------EPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPP  248 (543)
T ss_dssp             CTTSCEEEEEETTSEEEEEETTSS-----------------SCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESS
T ss_pred             CCCCCEEEEECCCCeEEEEECcCC-----------------CCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCC
Confidence            334488999999999999966210                 1134455553 34579999999    9999999985 89


Q ss_pred             cEEEEECCCCeEEEEecc----------cC-CCeEEEEEcCCCCE-EEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEE
Q 005473          578 KAVLWCTESFTVKSTLEE----------HT-QWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS  645 (695)
Q Consensus       578 ~V~IWDl~t~~~~~~l~~----------H~-~~V~~v~~spdg~~-LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~s  645 (695)
                      +|.|||..+++++.++..          |. ..+.++.++|++.. +++...+++|.+||+.+.+.+......+...+.+
T Consensus       249 ~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~  328 (543)
T 1nir_A          249 QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHD  328 (543)
T ss_dssp             EEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCC
T ss_pred             eEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccC
Confidence            999999999999988864          22 37899999997665 5667789999999998866433223346677899


Q ss_pred             EEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec
Q 005473          646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKN  681 (695)
Q Consensus       646 l~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~  681 (695)
                      +.|+|+|+++++++..+++|.+||+.+++++..+..
T Consensus       329 ~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~  364 (543)
T 1nir_A          329 GGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV  364 (543)
T ss_dssp             EEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             ceECCCCCEEEEEecCCCeEEEEECCCCeEEEeecc
Confidence            999999998888888899999999999999998884

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.50  E-value=2.6e-12  Score=133.47  Aligned_cols=170  Identities=15%  Similarity=0.190  Sum_probs=118.6

Q ss_pred             cEEE-EeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEC
Q 005473          507 RFVD-DGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCT  584 (695)
Q Consensus       507 ~~la-sgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs-~Dg~V~IWDl  584 (695)
                      ++++ ++..++.|.+|+..+                +.....+..+..+. .+.+++|+|++++|++++ .|+.|++||+
T Consensus        96 ~~l~~~~~~~~~i~~~d~~~----------------~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~  158 (343)
T 1ri6_A           96 QFVFVGSYNAGNVSVTRLED----------------GLPVGVVDVVEGLD-GCHSANISPDNRTLWVPALKQDRICLFTV  158 (343)
T ss_dssp             SEEEEEETTTTEEEEEEEET----------------TEEEEEEEEECCCT-TBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             CEEEEEecCCCeEEEEECCC----------------CccccccccccCCC-CceEEEECCCCCEEEEecCCCCEEEEEEe
Confidence            4444 444578899996531                11223344444443 489999999999888887 8999999999


Q ss_pred             CC-CeEEE----Eecc-cCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCC--CCee-EEEEe----cC--CCCeEEEEE
Q 005473          585 ES-FTVKS----TLEE-HTQWITDVRFSPSLSRLATSS-ADRTVRVWDTEN--PDYS-LRTFT----GH--STTVMSLDF  648 (695)
Q Consensus       585 ~t-~~~~~----~l~~-H~~~V~~v~~spdg~~LaTgs-~DgtIrvWDl~t--~~~~-l~~~~----gh--~~~V~sl~f  648 (695)
                      .+ ++...    .+.. ....+.+++|+|++++|++++ .++.|++||++.  +... +..+.    ++  ...+.+++|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~  238 (343)
T 1ri6_A          159 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHI  238 (343)
T ss_dssp             CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred             cCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEE
Confidence            87 65432    2222 345788999999999775554 789999999954  3221 22222    11  235778999


Q ss_pred             ecCCCeEEEEEeCCCcEEEEECC--C--CeEEEEEecCCCcEEEEEEeCCC
Q 005473          649 HPSKEDLLCSCDNNSEIRYWSIN--N--GSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       649 spdg~~llaSgs~Dg~IriWDl~--t--g~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +|+++.+++++..++.|++||+.  +  .+.+..+..+.. +.+++| +|+
T Consensus       239 s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~-s~d  287 (343)
T 1ri6_A          239 TPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNV-DHS  287 (343)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEE-CTT
T ss_pred             CCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEE-CCC
Confidence            99999888788889999999998  3  355666665554 788999 885

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.49  E-value=8.6e-14  Score=161.65  Aligned_cols=165  Identities=12%  Similarity=0.034  Sum_probs=121.6

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCC---CeEEEEEcCCCCEEEEEeCC-------
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPDGKLLATGGHD-------  576 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~---~V~~v~fspdg~~LaSgs~D-------  576 (695)
                      +++++ +.|++|++|+...+.                   ....+.+|..   .|.+++|||||++|++++.+       
T Consensus        29 ~~~~~-~~dg~i~~~d~~~g~-------------------~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~   88 (723)
T 1xfd_A           29 EFIYR-EQKGTVRLWNVETNT-------------------STVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHS   88 (723)
T ss_dssp             CBCCC-CSSSCEEEBCGGGCC-------------------CEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSC
T ss_pred             cEEEE-eCCCCEEEEECCCCc-------------------EEEEeccccccccccceEEECCCCCEEEEEecCccceeec
Confidence            34444 578899999653331                   2233445554   49999999999999999875       


Q ss_pred             --CcEEEEECCCCeEEEEe---cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCC---------
Q 005473          577 --KKAVLWCTESFTVKSTL---EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT---------  642 (695)
Q Consensus       577 --g~V~IWDl~t~~~~~~l---~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~---------  642 (695)
                        +.|+|||+.++++ ..+   .+|...|.+++|+|||+.|++++. +.|++||+.++.. ......+...         
T Consensus        89 ~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~-~~~~~~~~~~~~~~g~~~~  165 (723)
T 1xfd_A           89 YTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA-IRVVSTGKEGVIYNGLSDW  165 (723)
T ss_dssp             CCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC-EEEECCCBTTTEEEEECCH
T ss_pred             ceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce-EEEecCCCCCceECcccce
Confidence              7788999998876 333   345556899999999999999885 7999999998664 4444443332         


Q ss_pred             ---------eEEEEEecCCCeEEEEEeCC---------------------------------CcEEEEECCCCeEEEEEe
Q 005473          643 ---------VMSLDFHPSKEDLLCSCDNN---------------------------------SEIRYWSINNGSCAGVFK  680 (695)
Q Consensus       643 ---------V~sl~fspdg~~llaSgs~D---------------------------------g~IriWDl~tg~~v~~~~  680 (695)
                               +.+++|+|||+.|+++...+                                 ..|++||+.++++...+.
T Consensus       166 v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~  245 (723)
T 1xfd_A          166 LYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM  245 (723)
T ss_dssp             HHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC
T ss_pred             eEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee
Confidence                     37899999999666544321                                 279999999988777776


Q ss_pred             cC------CCcEEEEEEeCCC
Q 005473          681 NF------FESFVSVRVVQPR  695 (695)
Q Consensus       681 ~h------~~~VtsVaf~sPd  695 (695)
                      .|      ...|.+++| +||
T Consensus       246 ~~~~~~~~~~~~~~~~~-SpD  265 (723)
T 1xfd_A          246 PPDDPRMREYYITMVKW-ATS  265 (723)
T ss_dssp             CCCCGGGSSEEEEEEEE-SSS
T ss_pred             CCccCCCccceeEEEEE-eCC
Confidence            54      678899999 996

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.46  E-value=1e-12  Score=160.47  Aligned_cols=163  Identities=5%  Similarity=-0.064  Sum_probs=131.0

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCC-CeEEEEEcCCCCEEEEEeCCCcEE-EEEC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS-KVESCHFSPDGKLLATGGHDKKAV-LWCT  584 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~-~V~~v~fspdg~~LaSgs~Dg~V~-IWDl  584 (695)
                      ++++.++ ++.|.+|....+                    ....+..|.. .+.+++|+ ||+.|++++.+..|+ +||+
T Consensus       309 ~~la~~~-~~~i~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~  366 (1045)
T 1k32_A          309 DLIAFVS-RGQAFIQDVSGT--------------------YVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDY  366 (1045)
T ss_dssp             GCEEEEE-TTEEEEECTTSS--------------------BEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEET
T ss_pred             CEEEEEE-cCEEEEEcCCCC--------------------ceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEEC
Confidence            4555555 677888854221                    1223456666 79999999 999999999888899 9999


Q ss_pred             CCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC--
Q 005473          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--  662 (695)
Q Consensus       585 ~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D--  662 (695)
                      .+++.. .+.+|...+.+++|+|+|++|++++.++.|++||+.++.. ...+.+|.+.|.+++|+|||+.+++++..+  
T Consensus       367 ~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~-~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~  444 (1045)
T 1k32_A          367 RTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP-TVIERSREAMITDFTISDNSRFIAYGFPLKHG  444 (1045)
T ss_dssp             TTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-EEEEECSSSCCCCEEECTTSCEEEEEEEECSS
T ss_pred             CCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCce-EEeccCCCCCccceEECCCCCeEEEEecCccc
Confidence            887655 4448889999999999999999999999999999998764 566668999999999999999766554432  


Q ss_pred             -------CcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          663 -------SEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       663 -------g~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                             +.|++||+.+++ +..+..|...+.+++| +||
T Consensus       445 ~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~-spd  482 (1045)
T 1k32_A          445 ETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAF-DAD  482 (1045)
T ss_dssp             TTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEE-CTT
T ss_pred             cccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceE-cCC
Confidence                   489999999887 7778888888999999 986

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.45  E-value=1.5e-11  Score=129.63  Aligned_cols=173  Identities=10%  Similarity=0.085  Sum_probs=120.1

Q ss_pred             CcEEEEee-CCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEec---------CCCCCeEEEEEcCCCCEEEEEeC
Q 005473          506 DRFVDDGS-LDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP---------ASTSKVESCHFSPDGKLLATGGH  575 (695)
Q Consensus       506 ~~~lasgS-~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~---------~H~~~V~~v~fspdg~~LaSgs~  575 (695)
                      .+++++++ .++.|.+|+...+..                ...+..+.         .+...+.+++|+|+|++++++..
T Consensus        97 g~~l~~~~~~~~~v~v~~~~~~g~----------------~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~  160 (347)
T 3hfq_A           97 RQLVYSANYHKGTAEVMKIAADGA----------------LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG  160 (347)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTSC----------------EEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT
T ss_pred             CCEEEEEeCCCCEEEEEEeCCCCC----------------eeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC
Confidence            35566665 678899997643211                11111111         12345899999999996666667


Q ss_pred             CCcEEEEECC-CCeEEE--Eeccc-CCCeEEEEEcCCCCEEEE-EeCCCeEEEEECCC--CCe-eEEEEecCC------C
Q 005473          576 DKKAVLWCTE-SFTVKS--TLEEH-TQWITDVRFSPSLSRLAT-SSADRTVRVWDTEN--PDY-SLRTFTGHS------T  641 (695)
Q Consensus       576 Dg~V~IWDl~-t~~~~~--~l~~H-~~~V~~v~~spdg~~LaT-gs~DgtIrvWDl~t--~~~-~l~~~~gh~------~  641 (695)
                      ++.|++||+. +++...  .+..+ ...+..++|+|+|++|++ +..++.|++||++.  +.. .+..+....      .
T Consensus       161 ~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~  240 (347)
T 3hfq_A          161 SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHN  240 (347)
T ss_dssp             TTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCC
T ss_pred             CCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCC
Confidence            8999999998 554332  22222 346788999999996655 56688999999874  332 123333332      3


Q ss_pred             CeEEEEEecCCCeEEEEEeCCCcEEEEECC---CCeEEEEEecCCCcEEEEEEeCCC
Q 005473          642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       642 ~V~sl~fspdg~~llaSgs~Dg~IriWDl~---tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      .+..++|+|||+.+++++..++.|.+||+.   +.+.+..+..+...+..|+| +|+
T Consensus       241 ~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~-spd  296 (347)
T 3hfq_A          241 GAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDL-DPT  296 (347)
T ss_dssp             EEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEE-CTT
T ss_pred             cceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEE-CCC
Confidence            488999999999888888889999999997   33566777777777899999 986

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.45  E-value=5.9e-13  Score=155.21  Aligned_cols=177  Identities=8%  Similarity=0.004  Sum_probs=131.5

Q ss_pred             ceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEE
Q 005473          482 KSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESC  561 (695)
Q Consensus       482 ~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v  561 (695)
                      +..+.|+||+               ++++.++. +.|.+|+...+...                 .+..+..|...|.++
T Consensus       111 v~~~~~SpDg---------------~~l~~~~~-~~i~~~d~~~~~~~-----------------~~~~l~~~~~~~~~~  157 (741)
T 2ecf_A          111 IVDYQWSPDA---------------QRLLFPLG-GELYLYDLKQEGKA-----------------AVRQLTHGEGFATDA  157 (741)
T ss_dssp             SCCCEECTTS---------------SEEEEEET-TEEEEEESSSCSTT-----------------SCCBCCCSSSCEEEE
T ss_pred             cceeEECCCC---------------CEEEEEeC-CcEEEEECCCCCcc-----------------eEEEcccCCcccccc
Confidence            4456777776               56666665 88999976433100                 112344566779999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCC----------------eEEEEEcCCCCEEEEEeCCC------
Q 005473          562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----------------ITDVRFSPSLSRLATSSADR------  619 (695)
Q Consensus       562 ~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~----------------V~~v~~spdg~~LaTgs~Dg------  619 (695)
                      +|+|||++|++++ ++.|++||+.+++.......+...                +.+++|+|||++|++++.|+      
T Consensus       158 ~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~  236 (741)
T 2ecf_A          158 KLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQ  236 (741)
T ss_dssp             EECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEE
T ss_pred             cCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceE
Confidence            9999999999988 568999999998877655444432                47899999999999987765      


Q ss_pred             ---------------------------eEEEEECCC-CCeeEEEEe--cCCCCeEEEEEecCCCeEEEEEe----CCCcE
Q 005473          620 ---------------------------TVRVWDTEN-PDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCD----NNSEI  665 (695)
Q Consensus       620 ---------------------------tIrvWDl~t-~~~~l~~~~--gh~~~V~sl~fspdg~~llaSgs----~Dg~I  665 (695)
                                                 .|++||+.+ ++. .....  .|...+.+++| |||+.+++++.    .+..|
T Consensus       237 ~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i  314 (741)
T 2ecf_A          237 KRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT-QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDL  314 (741)
T ss_dssp             EEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC-EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEE
T ss_pred             ecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCce-EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEE
Confidence                                       899999987 664 33332  47778999999 99997776654    36789


Q ss_pred             EEEECCCCeEEEEEecCCC----cEEEEEEeCCC
Q 005473          666 RYWSINNGSCAGVFKNFFE----SFVSVRVVQPR  695 (695)
Q Consensus       666 riWDl~tg~~v~~~~~h~~----~VtsVaf~sPd  695 (695)
                      ++||+.++++...+..|..    .+.+++| +||
T Consensus       315 ~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~-spd  347 (741)
T 2ecf_A          315 VEVTLASNQQRVLAHETSPTWVPLHNSLRF-LDD  347 (741)
T ss_dssp             EEEETTTCCEEEEEEEECSSCCCCCSCCEE-CTT
T ss_pred             EEEECCCCceEEEEEcCCCCcCCcCCceEE-CCC
Confidence            9999999998888876653    4568899 886

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.44  E-value=1.9e-12  Score=150.95  Aligned_cols=193  Identities=14%  Similarity=0.029  Sum_probs=128.0

Q ss_pred             CCCceEEEEecCCCccccccCCccCCCCcEEEEeeC-CC-----cEEEEeCCCCCCCCCccccccc------cCCCceee
Q 005473          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSL-DD-----NVESFLSPDDADPRDRVGRSAE------VGKGFTFT  546 (695)
Q Consensus       479 s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~-D~-----~V~lw~~~~~~~~~~~~~~~~d------~~~~~~~~  546 (695)
                      ......+.|++||               +++++++. |+     .|.+|+...+............      ........
T Consensus        36 ~~~~~~~~~SpdG---------------~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (741)
T 2ecf_A           36 GPTLMKPKVAPDG---------------SRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARR  100 (741)
T ss_dssp             CCCCEEEEECTTS---------------SEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------
T ss_pred             CCCCCCceEecCC---------------CEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhh
Confidence            3467788999988               66777777 77     8999977544211000000000      00000000


Q ss_pred             eEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--EEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 005473          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (695)
Q Consensus       547 ~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~--~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvW  624 (695)
                      +...+. ....|.+++|+|||++|++++. +.|++||+.++.  .+..+..|...+.+++|+|||++|++++ ++.|++|
T Consensus       101 ~~~~~~-~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~  177 (741)
T 2ecf_A          101 ERQRIA-AMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVI  177 (741)
T ss_dssp             -------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEE
T ss_pred             hhhhhc-cccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEE
Confidence            000000 0134789999999999999886 999999999873  3446777888999999999999999987 5699999


Q ss_pred             ECCCCCeeEEEEecCCCC----------------eEEEEEecCCCeEEEEEeCCC-------------------------
Q 005473          625 DTENPDYSLRTFTGHSTT----------------VMSLDFHPSKEDLLCSCDNNS-------------------------  663 (695)
Q Consensus       625 Dl~t~~~~l~~~~gh~~~----------------V~sl~fspdg~~llaSgs~Dg-------------------------  663 (695)
                      |+.++.. ......+...                +.+++|+|||+.|++++ .|+                         
T Consensus       178 d~~~g~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~-~d~~~~~~~~~~~~~p~~~~~~~~~~~~  255 (741)
T 2ecf_A          178 DLASGRQ-MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYAR-IDESPVPVQKRYEVYADRTDVIEQRYPA  255 (741)
T ss_dssp             ETTTTEE-EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEE-EECTTSCEEEEEEECSSCEEEEEEECCB
T ss_pred             ecCCCCE-EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEE-EcCCCCceEecCCCCCCcccceEeecCC
Confidence            9987553 3333333322                47899999999766544 343                         


Q ss_pred             --------cEEEEECCC-CeEEEEEe--cCCCcEEEEEE
Q 005473          664 --------EIRYWSINN-GSCAGVFK--NFFESFVSVRV  691 (695)
Q Consensus       664 --------~IriWDl~t-g~~v~~~~--~h~~~VtsVaf  691 (695)
                              .|++||+.+ +++.....  .|...|.+++|
T Consensus       256 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  294 (741)
T 2ecf_A          256 AGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW  294 (741)
T ss_dssp             TTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE
T ss_pred             CCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe
Confidence                    789999998 87665543  36677777777

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.43  E-value=1.1e-12  Score=152.25  Aligned_cols=141  Identities=12%  Similarity=0.097  Sum_probs=107.5

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCe------------------EEEEEcCCCCEEE
Q 005473          552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI------------------TDVRFSPSLSRLA  613 (695)
Q Consensus       552 ~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V------------------~~v~~spdg~~La  613 (695)
                      .+|...|.+++|||||++|+.++. +.|++||+.+++.......+...+                  .+++|+|||++|+
T Consensus       110 ~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la  188 (723)
T 1xfd_A          110 EVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLA  188 (723)
T ss_dssp             TCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEE
T ss_pred             ccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEE
Confidence            356666899999999999999885 789999999988776665544333                  7899999999999


Q ss_pred             EEeCCC----------------------------------eEEEEECCCCCeeEEEEecC------CCCeEEEEEecCCC
Q 005473          614 TSSADR----------------------------------TVRVWDTENPDYSLRTFTGH------STTVMSLDFHPSKE  653 (695)
Q Consensus       614 Tgs~Dg----------------------------------tIrvWDl~t~~~~l~~~~gh------~~~V~sl~fspdg~  653 (695)
                      +++.|+                                  .|++||+.++.. ...+..+      ...|.+++|+|||+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~-~~~l~~~~~~~~~~~~~~~~~~SpDg~  267 (723)
T 1xfd_A          189 YAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH-DLEMMPPDDPRMREYYITMVKWATSTK  267 (723)
T ss_dssp             EEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC-CEECCCCCCGGGSSEEEEEEEESSSSE
T ss_pred             EEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce-eEEeeCCccCCCccceeEEEEEeCCCe
Confidence            987553                                  799999988653 4555544      56789999999998


Q ss_pred             eEEEEEe---CCCcEEEEECCCCeEEEEEecC-CCcEE----EEEEeCCC
Q 005473          654 DLLCSCD---NNSEIRYWSINNGSCAGVFKNF-FESFV----SVRVVQPR  695 (695)
Q Consensus       654 ~llaSgs---~Dg~IriWDl~tg~~v~~~~~h-~~~Vt----sVaf~sPd  695 (695)
                      .+++...   .+..|++||+.++++...+..+ ...|.    +++| +||
T Consensus       268 ~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~-spd  316 (723)
T 1xfd_A          268 VAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVF-SKD  316 (723)
T ss_dssp             EEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEE-CTT
T ss_pred             EEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceE-cCC
Confidence            5543333   2368999999999988776543 34443    7889 886

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.42  E-value=2.1e-11  Score=129.42  Aligned_cols=187  Identities=16%  Similarity=0.171  Sum_probs=124.6

Q ss_pred             ceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceee--eEEEecCCCCCeE
Q 005473          482 KSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFT--EFQLIPASTSKVE  559 (695)
Q Consensus       482 ~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~--~v~~l~~H~~~V~  559 (695)
                      ...+.|+|++.              .+++++..++.|.+|...........        +.....  .......+...+.
T Consensus       157 ~~~~~~spdg~--------------~l~~~~~~~~~v~v~~~~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~~  214 (361)
T 3scy_A          157 LHCVRITPDGK--------------YLLADDLGTDQIHKFNINPNANADNK--------EKFLTKGTPEAFKVAPGSGPR  214 (361)
T ss_dssp             EEEEEECTTSS--------------EEEEEETTTTEEEEEEECTTCCTTTC--------CCCEEEEEEEEEECCTTCCEE
T ss_pred             ceEEEECCCCC--------------EEEEEeCCCCEEEEEEEcCCCCcccc--------cceeecccccceecCCCCCCe
Confidence            45678888774              34555556889999966433110000        000000  0111123344578


Q ss_pred             EEEEcCCCCEEEEEe-CCCcEEEEECCCCeEE--EEe---cccCCCeEEEEEcCCCCEEEEEeCC--CeEEEEECC--CC
Q 005473          560 SCHFSPDGKLLATGG-HDKKAVLWCTESFTVK--STL---EEHTQWITDVRFSPSLSRLATSSAD--RTVRVWDTE--NP  629 (695)
Q Consensus       560 ~v~fspdg~~LaSgs-~Dg~V~IWDl~t~~~~--~~l---~~H~~~V~~v~~spdg~~LaTgs~D--gtIrvWDl~--t~  629 (695)
                      +++|+|||++|++++ .++.|.+||+.+++..  ..+   ..+...+.+++|+|++++|++++.+  +.|.+|+++  ++
T Consensus       215 ~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g  294 (361)
T 3scy_A          215 HLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNG  294 (361)
T ss_dssp             EEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTC
T ss_pred             EEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCC
Confidence            999999999888777 5899999999877542  222   2334557899999999998776654  899999996  33


Q ss_pred             Ce-eEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC--CCCeEEEEEe-cCCCcEEEEEE
Q 005473          630 DY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI--NNGSCAGVFK-NFFESFVSVRV  691 (695)
Q Consensus       630 ~~-~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl--~tg~~v~~~~-~h~~~VtsVaf  691 (695)
                      .. .+..+.. ...+.+++|+|+|+++++++..++.|.+|++  .+++...... .+...++||+|
T Consensus       295 ~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~  359 (361)
T 3scy_A          295 TLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKF  359 (361)
T ss_dssp             CEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred             cEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEE
Confidence            32 2334443 4578899999999977777768899999655  5676655542 45567899999

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.42  E-value=1.3e-11  Score=130.00  Aligned_cols=149  Identities=14%  Similarity=0.161  Sum_probs=106.3

Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECC-CC--eEEEEecc---------cCCCeEEEEEcCCCCEE
Q 005473          546 TEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTE-SF--TVKSTLEE---------HTQWITDVRFSPSLSRL  612 (695)
Q Consensus       546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs-~Dg~V~IWDl~-t~--~~~~~l~~---------H~~~V~~v~~spdg~~L  612 (695)
                      +.+..+..+...+.+++|+|||++|++++ .++.|.+||+. ++  ..+..+..         +...+.+++|+|+++++
T Consensus        76 ~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~  155 (347)
T 3hfq_A           76 HKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLA  155 (347)
T ss_dssp             EEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEE
T ss_pred             EEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEE
Confidence            34445455677789999999999998888 68999999996 22  33333321         12348899999999966


Q ss_pred             EEEeCCCeEEEEECC-CCCee-EEEEecC-CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC--CeE--EEEEecCC--
Q 005473          613 ATSSADRTVRVWDTE-NPDYS-LRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--GSC--AGVFKNFF--  683 (695)
Q Consensus       613 aTgs~DgtIrvWDl~-t~~~~-l~~~~gh-~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t--g~~--v~~~~~h~--  683 (695)
                      ++...++.|++||+. ++... +..+..+ ...+..++|+|||+.+++++..++.|++|++..  ++.  +..+....  
T Consensus       156 v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~  235 (347)
T 3hfq_A          156 VIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPAD  235 (347)
T ss_dssp             EEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTT
T ss_pred             EEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCC
Confidence            666778999999998 43321 2222332 336889999999998888888899999999874  543  33443332  


Q ss_pred             ----CcEEEEEEeCCC
Q 005473          684 ----ESFVSVRVVQPR  695 (695)
Q Consensus       684 ----~~VtsVaf~sPd  695 (695)
                          ..+..++| +||
T Consensus       236 ~~~~~~~~~i~~-spd  250 (347)
T 3hfq_A          236 YTAHNGAAAIRL-SHD  250 (347)
T ss_dssp             CCSCCEEEEEEE-CTT
T ss_pred             CCCCCcceeEEE-CCC
Confidence                35788999 986

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.42  E-value=1.7e-12  Score=150.66  Aligned_cols=183  Identities=13%  Similarity=0.146  Sum_probs=127.6

Q ss_pred             CCcEEEEeeCCCcEEEEeCCC-----CCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEe-----
Q 005473          505 MDRFVDDGSLDDNVESFLSPD-----DADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-----  574 (695)
Q Consensus       505 ~~~~lasgS~D~~V~lw~~~~-----~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs-----  574 (695)
                      ..++++.+ .|++|.+|+...     +...............+.     ...+.+...+.++.|+|||++|++++     
T Consensus       131 dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~-----~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~  204 (706)
T 2z3z_A          131 VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQ-----AVHQREFGIEKGTFWSPKGSCLAFYRMDQSM  204 (706)
T ss_dssp             TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESS-----CCGGGCTTCCCSEEECTTSSEEEEEEEECTT
T ss_pred             CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEccc-----chhhhhcCCCceEEECCCCCEEEEEEECCCC
Confidence            34667774 689999998754     221100000000000000     01223344578999999999999987     


Q ss_pred             ----------------------------CCCcEEEEECCCCeEEEEec--ccCCCeEEEEEcCCCCEEEEEeCCC-----
Q 005473          575 ----------------------------HDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADR-----  619 (695)
Q Consensus       575 ----------------------------~Dg~V~IWDl~t~~~~~~l~--~H~~~V~~v~~spdg~~LaTgs~Dg-----  619 (695)
                                                  .+..|++||+.+++......  .|...|.+++|+||+++|++++.|+     
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~  284 (706)
T 2z3z_A          205 VKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNEC  284 (706)
T ss_dssp             SCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEE
T ss_pred             CceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCee
Confidence                                        44679999999988765442  5678899999999999999887776     


Q ss_pred             eEEEEECCCCCeeEEEEe-cCCC---CeEEEEEec--CCCeEEEEEeCCCcEEEEECC-CCeEEEEEecCCCcEEE-EEE
Q 005473          620 TVRVWDTENPDYSLRTFT-GHST---TVMSLDFHP--SKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKNFFESFVS-VRV  691 (695)
Q Consensus       620 tIrvWDl~t~~~~l~~~~-gh~~---~V~sl~fsp--dg~~llaSgs~Dg~IriWDl~-tg~~v~~~~~h~~~Vts-Vaf  691 (695)
                      .|++||+.++........ .+..   .+.++.|+|  ||+ ++++++.|+.++||+++ ++..+..+..|...|.+ ++|
T Consensus       285 ~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~-~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~  363 (706)
T 2z3z_A          285 KVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ-FIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGF  363 (706)
T ss_dssp             EEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE-EEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEE
T ss_pred             EEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE-EEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEE
Confidence            899999998743222222 2222   246789999  987 67788889999999987 67888888888888887 789


Q ss_pred             eCCC
Q 005473          692 VQPR  695 (695)
Q Consensus       692 ~sPd  695 (695)
                       +|+
T Consensus       364 -spd  366 (706)
T 2z3z_A          364 -DPK  366 (706)
T ss_dssp             -CTT
T ss_pred             -cCC
Confidence             885

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.42  E-value=2.6e-13  Score=157.97  Aligned_cols=164  Identities=13%  Similarity=0.138  Sum_probs=116.6

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCC---CeEEEEEcCCCCEEEEEeC--------
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPDGKLLATGGH--------  575 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~---~V~~v~fspdg~~LaSgs~--------  575 (695)
                      .+++++ .|++|++|+...+.                   ....+.+|..   .|.+++|||||++|++++.        
T Consensus        28 ~~~~~~-~d~~i~~~~~~~g~-------------------~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s   87 (719)
T 1z68_A           28 EYLHQS-ADNNIVLYNIETGQ-------------------SYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYS   87 (719)
T ss_dssp             EEEEEC-TTSCEEEEESSSCC-------------------EEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSC
T ss_pred             eEEEEc-CCCCEEEEEcCCCc-------------------EEEEEccccccccceeeEEECCCCCeEEEEecCceeEEee
Confidence            455554 58999999764431                   1222223322   4889999999999998876        


Q ss_pred             -CCcEEEEECCCCeEE--EEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCe---------
Q 005473          576 -DKKAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV---------  643 (695)
Q Consensus       576 -Dg~V~IWDl~t~~~~--~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V---------  643 (695)
                       |+.|+|||+.+++++  ..+   ...+.+++|+|||+.|+++. |+.|++||+.++.....+..++...|         
T Consensus        88 ~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~  163 (719)
T 1z68_A           88 YTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVY  163 (719)
T ss_dssp             EEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHH
T ss_pred             cceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccccccee
Confidence             789999999998873  122   35688999999999999986 78999999987664211223333222         


Q ss_pred             --------EEEEEecCCCeEEEEEeCCC---------------------------------cEEEEECCCCeEE------
Q 005473          644 --------MSLDFHPSKEDLLCSCDNNS---------------------------------EIRYWSINNGSCA------  676 (695)
Q Consensus       644 --------~sl~fspdg~~llaSgs~Dg---------------------------------~IriWDl~tg~~v------  676 (695)
                              .+++|+|||+.|++++..++                                 .|++||+.+++++      
T Consensus       164 ~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~  243 (719)
T 1z68_A          164 EEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVP  243 (719)
T ss_dssp             HHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECC
T ss_pred             eeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEcc
Confidence                    48999999996664443322                                 7899999988753      


Q ss_pred             --EEEecCCCcEEEEEEeCCC
Q 005473          677 --GVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       677 --~~~~~h~~~VtsVaf~sPd  695 (695)
                        ..+.+|...|.+++| +||
T Consensus       244 ~~~~~~~~~~~~~~~~~-SpD  263 (719)
T 1z68_A          244 VPAMIASSDYYFSWLTW-VTD  263 (719)
T ss_dssp             CCHHHHTSCEEEEEEEE-SSS
T ss_pred             CCccCCCCcceEEEeEE-eCC
Confidence              123468888999999 996

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.42  E-value=9.3e-12  Score=128.92  Aligned_cols=161  Identities=16%  Similarity=0.164  Sum_probs=117.5

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecC-----CCCCeEEEEEcCCCCEEEEEe-------
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA-----STSKVESCHFSPDGKLLATGG-------  574 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~-----H~~~V~~v~fspdg~~LaSgs-------  574 (695)
                      .++++++.++.|.+|+...+.                   .+..+..     |...+.+++|+|+|++|++++       
T Consensus        47 ~l~v~~~~~~~v~~~d~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~  107 (337)
T 1pby_B           47 IAYATVNKSESLVKIDLVTGE-------------------TLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLEL  107 (337)
T ss_dssp             EEEEEETTTTEEEEEETTTCC-------------------EEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECS
T ss_pred             EEEEEeCCCCeEEEEECCCCC-------------------eEeeEEcCCcccccccccceEECCCCCEEEEEeccccccc
Confidence            455666778899999664331                   1111111     122467899999999998886       


Q ss_pred             -----CCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec-----------
Q 005473          575 -----HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG-----------  638 (695)
Q Consensus       575 -----~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~g-----------  638 (695)
                           .++.|.+||+.+++.+..+.. ...+.+++|+|++++|+++  ++.|++||+.+++. +..+..           
T Consensus       108 ~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~s~  183 (337)
T 1pby_B          108 THFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTL-VEDKPIQSWEAETYAQP  183 (337)
T ss_dssp             SCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEE-EEEECSTTTTTTTBCCC
T ss_pred             ccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcE-eeeeeccccCCCceeCC
Confidence                 579999999999988877764 4568899999999988887  68899999987543 222221           


Q ss_pred             -------------------------------------------------------CCCCeEEEEEecCCCeEEEEEeCCC
Q 005473          639 -------------------------------------------------------HSTTVMSLDFHPSKEDLLCSCDNNS  663 (695)
Q Consensus       639 -------------------------------------------------------h~~~V~sl~fspdg~~llaSgs~Dg  663 (695)
                                                                             +...+.+++|+|+++.++++   ++
T Consensus       184 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~---~~  260 (337)
T 1pby_B          184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA---YN  260 (337)
T ss_dssp             BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE---ES
T ss_pred             CccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe---CC
Confidence                                                                   12234568999999865544   68


Q ss_pred             cEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          664 EIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       664 ~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      .|++||+.+++.+..+..+ ..+.+++| +|+
T Consensus       261 ~v~~~d~~~~~~~~~~~~~-~~~~~~~~-s~d  290 (337)
T 1pby_B          261 VLESFDLEKNASIKRVPLP-HSYYSVNV-STD  290 (337)
T ss_dssp             EEEEEETTTTEEEEEEECS-SCCCEEEE-CTT
T ss_pred             eEEEEECCCCcCcceecCC-CceeeEEE-CCC
Confidence            9999999999998888754 45688999 885

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.41  E-value=2.3e-12  Score=146.45  Aligned_cols=124  Identities=13%  Similarity=0.037  Sum_probs=106.4

Q ss_pred             EEEEEcCCCCEEEEEeCC----CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCC--eEEEEECCCCCee
Q 005473          559 ESCHFSPDGKLLATGGHD----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYS  632 (695)
Q Consensus       559 ~~v~fspdg~~LaSgs~D----g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~Dg--tIrvWDl~t~~~~  632 (695)
                      .+++|+|||++|++++.|    +.|++||+.+++.. .+..|.+.+..++|+|||++|+++..++  .|++||+.++.. 
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~-  230 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSV-  230 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCE-
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcE-
Confidence            789999999999988877    78999999888765 6788899999999999999999888888  899999998765 


Q ss_pred             EEEEecCCCCeEEEE--------EecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473          633 LRTFTGHSTTVMSLD--------FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       633 l~~~~gh~~~V~sl~--------fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf  691 (695)
                      . .+.+|...|.+++        |+||| .++++++.|+.+++|++  |+++.   .+.+.|.+++|
T Consensus       231 ~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~  290 (582)
T 3o4h_A          231 E-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID--GERVE---APQGNHGRVVL  290 (582)
T ss_dssp             E-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEE
T ss_pred             E-EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEe
Confidence            4 7778877777777        99999 68889999999999999  76655   34467778887

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.40  E-value=6.8e-12  Score=129.93  Aligned_cols=153  Identities=12%  Similarity=0.083  Sum_probs=116.0

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEec-CCCC-CeEEEEEcCCCCEEE-EEeCCCcEEEEE
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTS-KVESCHFSPDGKLLA-TGGHDKKAVLWC  583 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~-~H~~-~V~~v~fspdg~~La-Sgs~Dg~V~IWD  583 (695)
                      .++++++.++.|.+|+...+                   ..+..+. ++.. .+.+++|+|+|++++ ++..++.|++||
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~-------------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d   62 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKM-------------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID   62 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT-------------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             cEEEEcCCCCeEEEEECCCC-------------------cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEE
Confidence            57899999999999965432                   2223333 2221 478999999998665 555678999999


Q ss_pred             CCCCeEEEEecc-c----CCCeEEEEEcCCCCEEEEEe------------CCCeEEEEECCCCCeeEEEEecCCCCeEEE
Q 005473          584 TESFTVKSTLEE-H----TQWITDVRFSPSLSRLATSS------------ADRTVRVWDTENPDYSLRTFTGHSTTVMSL  646 (695)
Q Consensus       584 l~t~~~~~~l~~-H----~~~V~~v~~spdg~~LaTgs------------~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl  646 (695)
                      +.+++.+..+.. +    ...+.+++|+|++++|++++            .++.|++||+.+++. +..+.. ...+.++
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~  140 (337)
T 1pby_B           63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFEA-PRQITML  140 (337)
T ss_dssp             TTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEEC-CSSCCCE
T ss_pred             CCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE-EEEEeC-CCCccee
Confidence            999988876653 2    22678899999999998886            579999999987654 555553 4568889


Q ss_pred             EEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCC
Q 005473          647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFF  683 (695)
Q Consensus       647 ~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~  683 (695)
                      +|+|+++.++++   ++.|++||+.+++.+..+..+.
T Consensus       141 ~~s~dg~~l~~~---~~~i~~~d~~~~~~~~~~~~~~  174 (337)
T 1pby_B          141 AWARDGSKLYGL---GRDLHVMDPEAGTLVEDKPIQS  174 (337)
T ss_dssp             EECTTSSCEEEE---SSSEEEEETTTTEEEEEECSTT
T ss_pred             EECCCCCEEEEe---CCeEEEEECCCCcEeeeeeccc
Confidence            999999976655   6889999999999988887544

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.39  E-value=5.7e-12  Score=146.19  Aligned_cols=140  Identities=16%  Similarity=0.185  Sum_probs=109.3

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCC-eEEEEecc-cCC---CeEEEEEcC--CCCEEEEEeCCCe
Q 005473          553 ASTSKVESCHFSPDGKLLATGGHDK-----KAVLWCTESF-TVKSTLEE-HTQ---WITDVRFSP--SLSRLATSSADRT  620 (695)
Q Consensus       553 ~H~~~V~~v~fspdg~~LaSgs~Dg-----~V~IWDl~t~-~~~~~l~~-H~~---~V~~v~~sp--dg~~LaTgs~Dgt  620 (695)
                      .|...|.+++|+|||++|++++.|+     .|++||+.++ .....+.. +..   .+.+++|+|  ++++|++++.|+.
T Consensus       255 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~  334 (706)
T 2z3z_A          255 PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGW  334 (706)
T ss_dssp             CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSS
T ss_pred             CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCc
Confidence            5677899999999999999988776     8999999998 44333322 222   246789999  9999999999999


Q ss_pred             EEEEECCCCCeeEEEEecCCCCeEE-EEEecCCCeEEEEEeCCC----cEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          621 VRVWDTENPDYSLRTFTGHSTTVMS-LDFHPSKEDLLCSCDNNS----EIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       621 IrvWDl~t~~~~l~~~~gh~~~V~s-l~fspdg~~llaSgs~Dg----~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ++||+++.....+..+..|...|.+ ++|+|+++.++++++.++    .|+.||+.+++ +..+. |...|.+++| +||
T Consensus       335 ~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~-spd  411 (706)
T 2z3z_A          335 NHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQL-SPD  411 (706)
T ss_dssp             CEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEE-CTT
T ss_pred             cEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEE-CCC
Confidence            9999887333347778888777877 799999998888888776    77778887765 44443 6677899999 986

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.34  E-value=7e-11  Score=125.29  Aligned_cols=139  Identities=12%  Similarity=0.105  Sum_probs=101.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCe-------E------EEEecccCCCeEEEEEcCCCCEEEEEe-CCC
Q 005473          555 TSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFT-------V------KSTLEEHTQWITDVRFSPSLSRLATSS-ADR  619 (695)
Q Consensus       555 ~~~V~~v~fspdg~~LaSgs-~Dg~V~IWDl~t~~-------~------~~~l~~H~~~V~~v~~spdg~~LaTgs-~Dg  619 (695)
                      ...+.+++|+|+|++|++++ .++.|++|++....       .      ......+...+.+++|+|++++|++++ .++
T Consensus       154 ~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~  233 (361)
T 3scy_A          154 MPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGG  233 (361)
T ss_dssp             SCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTC
T ss_pred             CCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCC
Confidence            34578999999999776665 48899999887533       1      112233456688999999999887777 689


Q ss_pred             eEEEEECCCCCe-eEEEE---ecCCCCeEEEEEecCCCeEEEEEeC-CCcEEEEECC--CCe--EEEEEecCCCcEEEEE
Q 005473          620 TVRVWDTENPDY-SLRTF---TGHSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSIN--NGS--CAGVFKNFFESFVSVR  690 (695)
Q Consensus       620 tIrvWDl~t~~~-~l~~~---~gh~~~V~sl~fspdg~~llaSgs~-Dg~IriWDl~--tg~--~v~~~~~h~~~VtsVa  690 (695)
                      .|++||++++.. .+..+   ..+...+.+++|+|||+.+++++.. ++.|.+|++.  +++  .+..+.. ...+.+++
T Consensus       234 ~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~  312 (361)
T 3scy_A          234 TVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFI  312 (361)
T ss_dssp             EEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEE
T ss_pred             eEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEE
Confidence            999999986542 12222   2333557899999999977777766 7899999996  454  4555555 45678999


Q ss_pred             EeCCC
Q 005473          691 VVQPR  695 (695)
Q Consensus       691 f~sPd  695 (695)
                      | +|+
T Consensus       313 ~-spd  316 (361)
T 3scy_A          313 I-TPN  316 (361)
T ss_dssp             E-CTT
T ss_pred             E-CCC
Confidence            9 986

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.34  E-value=1.6e-11  Score=139.61  Aligned_cols=129  Identities=10%  Similarity=0.039  Sum_probs=103.1

Q ss_pred             eEEEEEcCCCC--EEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCC----CeEEEEECCCCCe
Q 005473          558 VESCHFSPDGK--LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENPDY  631 (695)
Q Consensus       558 V~~v~fspdg~--~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~D----gtIrvWDl~t~~~  631 (695)
                      +...+|+|||+  ++++++. +.+.|||+.++++......+.   .+++|+|||++|++++.|    +.|++||+.++..
T Consensus       112 ~~~~~~s~dg~~~~~~s~~~-~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~  187 (582)
T 3o4h_A          112 MRILSGVDTGEAVVFTGATE-DRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL  187 (582)
T ss_dssp             BEEEEEEECSSCEEEEEECS-SCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC
T ss_pred             ceeeeeCCCCCeEEEEecCC-CCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc
Confidence            45678888886  3444444 445699999988765554333   799999999999988777    7899999988664


Q ss_pred             eEEEEecCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCeEEEEEecCCCcEEEEE--------EeCCC
Q 005473          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKNFFESFVSVR--------VVQPR  695 (695)
Q Consensus       632 ~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg--~IriWDl~tg~~v~~~~~h~~~VtsVa--------f~sPd  695 (695)
                        ..+.+|.+.+.+++|+|||+.|+ +++.++  .|++||+.++++. .+.+|...|..++        | +||
T Consensus       188 --~~l~~~~~~~~~~~~SpDG~~l~-~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-spd  256 (582)
T 3o4h_A          188 --RVFDSGEGSFSSASISPGMKVTA-GLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGY-LPD  256 (582)
T ss_dssp             --EEECCSSCEEEEEEECTTSCEEE-EEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEE-CTT
T ss_pred             --eEeecCCCccccceECCCCCEEE-EccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeE-cCC
Confidence              57788989999999999999655 777888  8999999999888 7778887777777        8 886

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.33  E-value=6.7e-11  Score=123.27  Aligned_cols=129  Identities=12%  Similarity=0.094  Sum_probs=95.8

Q ss_pred             CeEEEEEcCCCCEEEEEeCC------------CcEEEEECCCCe---EEEEecccCCCeEEEEEcCCCCEEEEEeCCCeE
Q 005473          557 KVESCHFSPDGKLLATGGHD------------KKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTV  621 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~D------------g~V~IWDl~t~~---~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtI  621 (695)
                      .+.+++|+|+|++|++++.+            +.|.+||+.+++   .+..+.. ...+.+++|+|+++ +++++.  .|
T Consensus        93 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~-l~~~~~--~i  168 (349)
T 1jmx_B           93 SMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGS-LYVAGP--DI  168 (349)
T ss_dssp             CSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSC-EEEESS--SE
T ss_pred             cccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeECCCCc-EEEccC--cE
Confidence            37889999999999998865            899999998743   3344443 44688999999999 555543  49


Q ss_pred             EEEECCCCCeeEEEEecCC-------------------------------------------------------------
Q 005473          622 RVWDTENPDYSLRTFTGHS-------------------------------------------------------------  640 (695)
Q Consensus       622 rvWDl~t~~~~l~~~~gh~-------------------------------------------------------------  640 (695)
                      ++||+.+++. +..+..+.                                                             
T Consensus       169 ~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (349)
T 1jmx_B          169 YKMDVKTGKY-TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHT  247 (349)
T ss_dssp             EEECTTTCCE-EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEE
T ss_pred             EEEeCCCCce-eccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEe
Confidence            9999988664 44433221                                                             


Q ss_pred             -------CCeEEEEEec-CCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          641 -------TTVMSLDFHP-SKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       641 -------~~V~sl~fsp-dg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                             ..+.+++|+| ++..++ ++  ++.|++||+.+++.+..+..+ ..+.+++| +|+
T Consensus       248 ~~~~~~~~~~~~~~~sp~dg~~l~-~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~-s~d  305 (349)
T 1jmx_B          248 QEFADLTELYFTGLRSPKDPNQIY-GV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAF-DKK  305 (349)
T ss_dssp             EEEEECSSCEEEEEECSSCTTEEE-EE--ESEEEEEETTTTEEEEEEECS-SCCCEEEE-CSS
T ss_pred             cccccCCCcceeeEecCCCCCEEE-EE--cCeEEEEECccCeEEEEEcCC-CCccceEE-CCC
Confidence                   1345677889 988655 44  789999999999998888744 34678999 885

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.32  E-value=6.4e-11  Score=123.41  Aligned_cols=154  Identities=11%  Similarity=0.075  Sum_probs=113.9

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCC-CCeEEEEEcCCCCEEE-EEeCCCcEEEE
Q 005473          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLA-TGGHDKKAVLW  582 (695)
Q Consensus       505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~-~~V~~v~fspdg~~La-Sgs~Dg~V~IW  582 (695)
                      ...++++++.++.|.+|+...+                   ..+..+..+. ..+.+++|+|+|++++ ++..++.|.+|
T Consensus        10 ~~~~~v~~~~~~~v~~~d~~~~-------------------~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~   70 (349)
T 1jmx_B           10 GHEYMIVTNYPNNLHVVDVASD-------------------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGI   70 (349)
T ss_dssp             TCEEEEEEETTTEEEEEETTTT-------------------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCEEEEEeCCCCeEEEEECCCC-------------------cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEE
Confidence            3478899999999999966432                   2223333332 2478999999999665 45568999999


Q ss_pred             ECCCCeEEEEecccC------CCeEEEEEcCCCCEEEEEeCC------------CeEEEEECCCCCe--eEEEEecCCCC
Q 005473          583 CTESFTVKSTLEEHT------QWITDVRFSPSLSRLATSSAD------------RTVRVWDTENPDY--SLRTFTGHSTT  642 (695)
Q Consensus       583 Dl~t~~~~~~l~~H~------~~V~~v~~spdg~~LaTgs~D------------gtIrvWDl~t~~~--~l~~~~gh~~~  642 (695)
                      |+.+++.+..+..+.      ..+.+++|+|++++|++++.+            +.|++||+.+++.  .+..+.. ...
T Consensus        71 d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~  149 (349)
T 1jmx_B           71 DLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQ  149 (349)
T ss_dssp             ETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSS
T ss_pred             eCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCc
Confidence            999999887775332      337899999999999988865            8999999987432  2344443 346


Q ss_pred             eEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecC
Q 005473          643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF  682 (695)
Q Consensus       643 V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h  682 (695)
                      +.+++|+|+|+ +++ ++  +.|++||+.+++.+..+..+
T Consensus       150 ~~~~~~s~dg~-l~~-~~--~~i~~~d~~~~~~~~~~~~~  185 (349)
T 1jmx_B          150 VYLMRAADDGS-LYV-AG--PDIYKMDVKTGKYTVALPLR  185 (349)
T ss_dssp             CCCEEECTTSC-EEE-ES--SSEEEECTTTCCEEEEECST
T ss_pred             ccceeECCCCc-EEE-cc--CcEEEEeCCCCceecccccc
Confidence            89999999998 665 43  34999999999988877643

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.31  E-value=2.5e-11  Score=142.63  Aligned_cols=174  Identities=16%  Similarity=0.088  Sum_probs=123.7

Q ss_pred             eEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCC-----C
Q 005473          483 SLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS-----K  557 (695)
Q Consensus       483 s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~-----~  557 (695)
                      ..+.|.+++               .+++++  |++|++|+...+.                   +...+.+|..     .
T Consensus        20 ~~~~w~~dg---------------~~~~~~--~~~i~~~~~~~~~-------------------~~~~~~~~~~~~~~~~   63 (740)
T 4a5s_A           20 YSLRWISDH---------------EYLYKQ--ENNILVFNAEYGN-------------------SSVFLENSTFDEFGHS   63 (740)
T ss_dssp             CCEEECSSS---------------EEEEEE--TTEEEEEETTTCC-------------------EEEEECTTTTTTCCSC
T ss_pred             cccEECCCC---------------cEEEEc--CCcEEEEECCCCc-------------------eEEEEechhhhhhccc
Confidence            356777776               567775  8999999765442                   1223444432     2


Q ss_pred             eEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005473          558 VESCHFSPDGKLLATGGHD---------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~D---------g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t  628 (695)
                      ...+.|||||++|+.++.+         +.+.|||+.++++. .+..|.+.+..++|||||+.||.+. |+.|++||+.+
T Consensus        64 ~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~  141 (740)
T 4a5s_A           64 INDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPN  141 (740)
T ss_dssp             CCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTT
T ss_pred             ccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCC
Confidence            3458999999999999876         55679999998865 4677888999999999999999885 78999999987


Q ss_pred             CCeeEEEEecCCCCe-----------------EEEEEecCCCeEEEEEeCCC----------------------------
Q 005473          629 PDYSLRTFTGHSTTV-----------------MSLDFHPSKEDLLCSCDNNS----------------------------  663 (695)
Q Consensus       629 ~~~~l~~~~gh~~~V-----------------~sl~fspdg~~llaSgs~Dg----------------------------  663 (695)
                      +.....+..++...+                 .++.|+|||+.|++....++                            
T Consensus       142 ~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~  221 (740)
T 4a5s_A          142 LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKA  221 (740)
T ss_dssp             SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBT
T ss_pred             CceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCC
Confidence            664222233333322                 35899999997665543222                            


Q ss_pred             -------cEEEEECCC---Ce--EEEEEe------cCCCcEEEEEEeCCC
Q 005473          664 -------EIRYWSINN---GS--CAGVFK------NFFESFVSVRVVQPR  695 (695)
Q Consensus       664 -------~IriWDl~t---g~--~v~~~~------~h~~~VtsVaf~sPd  695 (695)
                             .|++||+.+   ++  ....+.      +|...|..++| +||
T Consensus       222 G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w-spd  270 (740)
T 4a5s_A          222 GAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTW-ATQ  270 (740)
T ss_dssp             TSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEE-EET
T ss_pred             cCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEE-eCC
Confidence                   588899988   73  223333      37788999999 886

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.31  E-value=3.5e-11  Score=146.88  Aligned_cols=119  Identities=13%  Similarity=0.048  Sum_probs=101.5

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCC----------
Q 005473          550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR----------  619 (695)
Q Consensus       550 ~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~Dg----------  619 (695)
                      .+.+|...|.+++|+|||++|++++.|+.|++||+.+++....+.+|.+.|.+++|+|||++|++++.++          
T Consensus       373 ~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~  452 (1045)
T 1k32_A          373 KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ  452 (1045)
T ss_dssp             ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEE
T ss_pred             EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCC
Confidence            3447778899999999999999999999999999999998888878999999999999999998887654          


Q ss_pred             eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 005473          620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (695)
Q Consensus       620 tIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~  671 (695)
                      .|++||+.++.  +..+..|...+.+++|+|||+.++ +++.++.+++|+..
T Consensus       453 ~i~l~d~~~g~--~~~l~~~~~~~~~~~~spdG~~l~-~~s~~~~~~~~~~~  501 (1045)
T 1k32_A          453 AIHVYDMEGRK--IFAATTENSHDYAPAFDADSKNLY-YLSYRSLDPSPDRV  501 (1045)
T ss_dssp             EEEEEETTTTE--EEECSCSSSBEEEEEECTTSCEEE-EEESCCCCCEECSS
T ss_pred             eEEEEECCCCc--EEEeeCCCcccCCceEcCCCCEEE-EEecccCCcCcchh
Confidence            89999999754  677888888899999999999655 56666666666643

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.27  E-value=2.6e-10  Score=122.03  Aligned_cols=169  Identities=9%  Similarity=0.084  Sum_probs=114.0

Q ss_pred             cEEEEeeCCCcEEEEeCC-CCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCE--EEEEe---------
Q 005473          507 RFVDDGSLDDNVESFLSP-DDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKL--LATGG---------  574 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~-~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~--LaSgs---------  574 (695)
                      +++++++.+ .|.+|+.. ++                 ....+.....+ +.+.+++|+|||++  ++++.         
T Consensus        52 ~~l~~~~~~-~v~~~~~~~~g-----------------~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~  112 (365)
T 1jof_A           52 KNIYGAAMK-KWSSFAVKSPT-----------------EIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYAN  112 (365)
T ss_dssp             SEEEEEEBT-EEEEEEEEETT-----------------EEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEE
T ss_pred             CEEEEEccc-eEEEEEECCCC-----------------CEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccc
Confidence            667777777 88888653 11                 01111111111 23567899999994  55553         


Q ss_pred             ----CCCcEEEEECC-CCeEEEEec----ccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECC-CCCee-EEEEe--cCC
Q 005473          575 ----HDKKAVLWCTE-SFTVKSTLE----EHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTE-NPDYS-LRTFT--GHS  640 (695)
Q Consensus       575 ----~Dg~V~IWDl~-t~~~~~~l~----~H~~~V~~v~~spdg~~LaTgs~-DgtIrvWDl~-t~~~~-l~~~~--gh~  640 (695)
                          .++.+.+|++. .++....+.    .+...+.+++|+|+|++|++++. ++.|++||++ +++.. +..+.  .|.
T Consensus       113 ~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g  192 (365)
T 1jof_A          113 PFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG  192 (365)
T ss_dssp             EESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred             eeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence                68999999997 465544443    25678999999999998887764 6799999998 65532 23333  245


Q ss_pred             CCeEEEEEecCCCeEEEEEeCCCcEEEEECC--CCeEEE---EEe-------cCCC------cEEEEE-EeCCC
Q 005473          641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--NGSCAG---VFK-------NFFE------SFVSVR-VVQPR  695 (695)
Q Consensus       641 ~~V~sl~fspdg~~llaSgs~Dg~IriWDl~--tg~~v~---~~~-------~h~~------~VtsVa-f~sPd  695 (695)
                      ..+..++|+|+|+.+++++..++.|.+|+++  +++...   .+.       +|..      .+..++ | +||
T Consensus       193 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-spd  265 (365)
T 1jof_A          193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCAL-TFS  265 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEE-CTT
T ss_pred             CCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEE-CCC
Confidence            6799999999999777666668899999875  565432   222       1222      578999 8 986

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.26  E-value=7.6e-12  Score=145.63  Aligned_cols=137  Identities=13%  Similarity=0.034  Sum_probs=102.1

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cccCCCe-----------------EEEEEcCCCCEEEEEeC
Q 005473          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWI-----------------TDVRFSPSLSRLATSSA  617 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l-~~H~~~V-----------------~~v~~spdg~~LaTgs~  617 (695)
                      ..|.+++|||||+.|+.+. |+.|++||+.++++.... .++...|                 .+++|+|||++|++++.
T Consensus       110 ~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~  188 (719)
T 1z68_A          110 RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEF  188 (719)
T ss_dssp             SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEE
T ss_pred             cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEE
Confidence            3588999999999999986 789999999888765433 3333323                 48999999999999876


Q ss_pred             CC----------------------------------eEEEEECCCCCee--E-----EEEecCCCCeEEEEEecCCCeEE
Q 005473          618 DR----------------------------------TVRVWDTENPDYS--L-----RTFTGHSTTVMSLDFHPSKEDLL  656 (695)
Q Consensus       618 Dg----------------------------------tIrvWDl~t~~~~--l-----~~~~gh~~~V~sl~fspdg~~ll  656 (695)
                      |.                                  .|++||+.++...  +     ..+.+|...+.+++|+||+. ++
T Consensus       189 d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~  267 (719)
T 1z68_A          189 NDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER-VC  267 (719)
T ss_dssp             ECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE-EE
T ss_pred             CCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCe-EE
Confidence            52                                  7899999876531  1     12346888899999999965 66


Q ss_pred             EEEeCC----CcEEEEE----CCCCeEEEEE----ecCCCcEE-----EEEEeCCC
Q 005473          657 CSCDNN----SEIRYWS----INNGSCAGVF----KNFFESFV-----SVRVVQPR  695 (695)
Q Consensus       657 aSgs~D----g~IriWD----l~tg~~v~~~----~~h~~~Vt-----sVaf~sPd  695 (695)
                      ++....    ..|++||    +.++++...+    .+|.+.|.     .++| +||
T Consensus       268 ~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-spd  322 (719)
T 1z68_A          268 LQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVF-SYD  322 (719)
T ss_dssp             EEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEE-CTT
T ss_pred             EEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEE-CCC
Confidence            564422    2489999    8888877665    46777776     7888 885

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.23  E-value=8.5e-10  Score=117.98  Aligned_cols=140  Identities=14%  Similarity=0.079  Sum_probs=98.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECC-CCeEE--EEec--ccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEC
Q 005473          554 STSKVESCHFSPDGKLLATGGH-DKKAVLWCTE-SFTVK--STLE--EHTQWITDVRFSPSLSRLATSSA-DRTVRVWDT  626 (695)
Q Consensus       554 H~~~V~~v~fspdg~~LaSgs~-Dg~V~IWDl~-t~~~~--~~l~--~H~~~V~~v~~spdg~~LaTgs~-DgtIrvWDl  626 (695)
                      +...+.+++|+|||++|+++.. ++.|++||+. +++..  ..+.  .|...+..++|+|+|++|++++. +++|.+|++
T Consensus       143 ~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~  222 (365)
T 1jof_A          143 ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVI  222 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEE
Confidence            4567999999999998888764 6899999998 67653  2333  24567999999999999888775 789999987


Q ss_pred             C--CCCeeE--EEEe-------cCCC------CeEEEE-EecCCCeEEEEEeCCC-----cEEEEECC-CCeEEE---EE
Q 005473          627 E--NPDYSL--RTFT-------GHST------TVMSLD-FHPSKEDLLCSCDNNS-----EIRYWSIN-NGSCAG---VF  679 (695)
Q Consensus       627 ~--t~~~~l--~~~~-------gh~~------~V~sl~-fspdg~~llaSgs~Dg-----~IriWDl~-tg~~v~---~~  679 (695)
                      +  +++...  ..+.       +|..      .+..++ |+|||+.++++...+.     .|++|++. +++...   .+
T Consensus       223 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~  302 (365)
T 1jof_A          223 DPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS  302 (365)
T ss_dssp             CTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE
T ss_pred             eCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeee
Confidence            5  344311  1221       2222      588999 9999997765554333     89999996 566543   23


Q ss_pred             ecCCCcEEEEEEeCC
Q 005473          680 KNFFESFVSVRVVQP  694 (695)
Q Consensus       680 ~~h~~~VtsVaf~sP  694 (695)
                      ..+...+..++| +|
T Consensus       303 ~~~~~~~~~~a~-sp  316 (365)
T 1jof_A          303 PTPTSGGHSNAV-SP  316 (365)
T ss_dssp             ECSSCCTTCCCE-EE
T ss_pred             ecCCCCccccee-cC
Confidence            334445567777 76

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.20  E-value=2.6e-10  Score=124.39  Aligned_cols=126  Identities=14%  Similarity=0.086  Sum_probs=104.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE
Q 005473          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (695)
Q Consensus       554 H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l  633 (695)
                      +.. |+.|+|  |+++|+++ .++.|++||+++......+..|...|.++.+.+.  .+++++.||.|.+||+.++.. .
T Consensus        87 lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~-~  159 (388)
T 1xip_A           87 IPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKST-K  159 (388)
T ss_dssp             CTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCE-E
T ss_pred             CCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcc-c
Confidence            556 999999  99999999 8899999999887766677778888999888764  388889999999999997654 3


Q ss_pred             EEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeE--EEEE------e---cCCCcEEEEEEeCC
Q 005473          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--AGVF------K---NFFESFVSVRVVQP  694 (695)
Q Consensus       634 ~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~--v~~~------~---~h~~~VtsVaf~sP  694 (695)
                      .    +...|+|++|+|+|   ++.|..||.|++|+...+++  ..++      .   +|...|.+|.| .+
T Consensus       160 ~----~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~w-l~  223 (388)
T 1xip_A          160 Q----LAQNVTSFDVTNSQ---LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTI-LS  223 (388)
T ss_dssp             E----EEESEEEEEECSSE---EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEE-SS
T ss_pred             c----ccCCceEEEEcCCc---eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEE-ec
Confidence            2    34589999999998   45788899999999988876  6667      2   47889999999 54

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.19  E-value=3e-10  Score=130.67  Aligned_cols=139  Identities=10%  Similarity=0.098  Sum_probs=104.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCC----------CcEEEEECCC------CeEEEEec-ccCCCeEEEEEcCCCCEEEEEe
Q 005473          554 STSKVESCHFSPDGKLLATGGHD----------KKAVLWCTES------FTVKSTLE-EHTQWITDVRFSPSLSRLATSS  616 (695)
Q Consensus       554 H~~~V~~v~fspdg~~LaSgs~D----------g~V~IWDl~t------~~~~~~l~-~H~~~V~~v~~spdg~~LaTgs  616 (695)
                      |...+.+++|+|||+.|++++.|          ..|++||+.+      ++. ..+. .+...+..++|+|||++|+.++
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~  206 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLA  206 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEE
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEE
Confidence            56678999999999999998877          5899999988      554 4555 6667888999999999998877


Q ss_pred             CC--------CeEEEEECC-CCC--eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCeEEEEEecCC
Q 005473          617 AD--------RTVRVWDTE-NPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKNFF  683 (695)
Q Consensus       617 ~D--------gtIrvWDl~-t~~--~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg--~IriWDl~tg~~v~~~~~h~  683 (695)
                      .+        ..|++||+. ++.  .......+|...+.++.|+|||+ ++++++.|+  .|++||+.++++.....++.
T Consensus       207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~  285 (662)
T 3azo_A          207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCRREE  285 (662)
T ss_dssp             ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSS
T ss_pred             CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCceeecccccc
Confidence            54        379999998 451  33444555678899999999999 778888888  66677776776655444333


Q ss_pred             Cc--------EEEEEEeCCC
Q 005473          684 ES--------FVSVRVVQPR  695 (695)
Q Consensus       684 ~~--------VtsVaf~sPd  695 (695)
                      ..        +.+++| +|+
T Consensus       286 ~~~~p~w~~~~~~~~~-~~~  304 (662)
T 3azo_A          286 EFAGPLWTPGMRWFAP-LAN  304 (662)
T ss_dssp             BSSCCCCSTTCCSEEE-CTT
T ss_pred             cccCccccccCceEeE-eCC
Confidence            22        455666 553

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.19  E-value=3e-10  Score=130.65  Aligned_cols=135  Identities=10%  Similarity=0.023  Sum_probs=99.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCC--------cEEEEECC-CC---eEEEEecccCCCeEEEEEcCCCCEEEEEeCCC-
Q 005473          553 ASTSKVESCHFSPDGKLLATGGHDK--------KAVLWCTE-SF---TVKSTLEEHTQWITDVRFSPSLSRLATSSADR-  619 (695)
Q Consensus       553 ~H~~~V~~v~fspdg~~LaSgs~Dg--------~V~IWDl~-t~---~~~~~l~~H~~~V~~v~~spdg~~LaTgs~Dg-  619 (695)
                      .+...+..++|+|||++|+.++.++        .|++||+. ++   +......+|...+..++|+|||+++++++.|+ 
T Consensus       185 ~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~  264 (662)
T 3azo_A          185 DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGW  264 (662)
T ss_dssp             SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSS
T ss_pred             cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCC
Confidence            4456688899999999999887553        79999998 56   55555556678999999999999888888888 


Q ss_pred             -eEEEEECCCCCeeEEEEecCCCC--------eEEEEEecCCCeEEEEEeCCCcEEEE--ECCCCeEEEEEecCCCcEEE
Q 005473          620 -TVRVWDTENPDYSLRTFTGHSTT--------VMSLDFHPSKEDLLCSCDNNSEIRYW--SINNGSCAGVFKNFFESFVS  688 (695)
Q Consensus       620 -tIrvWDl~t~~~~l~~~~gh~~~--------V~sl~fspdg~~llaSgs~Dg~IriW--Dl~tg~~v~~~~~h~~~Vts  688 (695)
                       .|++||+.++.. .....++...        +.+++|+|++. ++++++. +.++||  |+.+++ +..+..|.+.|..
T Consensus       265 ~~l~~~~~~~~~~-~~l~~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~  340 (662)
T 3azo_A          265 WNLHRVDPATGAA-TQLCRREEEFAGPLWTPGMRWFAPLANGL-IAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAA  340 (662)
T ss_dssp             CEEEEECTTTCCE-EESSCCSSBSSCCCCSTTCCSEEECTTSC-EEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEE
T ss_pred             eEEEEEECCCCce-eecccccccccCccccccCceEeEeCCCE-EEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEE
Confidence             677777755542 2222222222        56788999877 6778887 999999  555554 6777788777777


Q ss_pred             E-EE
Q 005473          689 V-RV  691 (695)
Q Consensus       689 V-af  691 (695)
                      + ++
T Consensus       341 ~~s~  344 (662)
T 3azo_A          341 TLTV  344 (662)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            7 55

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.18  E-value=5.7e-09  Score=110.08  Aligned_cols=139  Identities=14%  Similarity=0.146  Sum_probs=109.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEe---------cccCCCeEEEEEcC-CCCEEEEEe-CCCe
Q 005473          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTL---------EEHTQWITDVRFSP-SLSRLATSS-ADRT  620 (695)
Q Consensus       553 ~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~-~~~~l---------~~H~~~V~~v~~sp-dg~~LaTgs-~Dgt  620 (695)
                      ++......|+++++|+++++...++.|++||..... .+..+         .++-.....|+|+| ++.++++.+ .++.
T Consensus        88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~  167 (329)
T 3fvz_A           88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR  167 (329)
T ss_dssp             TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred             CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence            444568999999999988888889999999986542 45555         34455789999999 788888886 6999


Q ss_pred             EEEEECCCCCeeEEEEecC----------CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe--cCCCcEEE
Q 005473          621 VRVWDTENPDYSLRTFTGH----------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--NFFESFVS  688 (695)
Q Consensus       621 IrvWDl~t~~~~l~~~~gh----------~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~--~h~~~Vts  688 (695)
                      |++||.. +.. +..+...          -.....|+|+|++..++++...++.|++||..+|+.+..+.  .+...+.+
T Consensus       168 I~~~~~~-g~~-~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~  245 (329)
T 3fvz_A          168 IVQFSPS-GKF-VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFA  245 (329)
T ss_dssp             EEEECTT-SCE-EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEE
T ss_pred             EEEEcCC-CCE-EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcce
Confidence            9999954 443 5555422          23489999999966688888899999999999899998885  45677888


Q ss_pred             EEEeCC
Q 005473          689 VRVVQP  694 (695)
Q Consensus       689 Vaf~sP  694 (695)
                      ++| +|
T Consensus       246 ~~~-~p  250 (329)
T 3fvz_A          246 ISY-IP  250 (329)
T ss_dssp             EEE-ET
T ss_pred             eee-cC
Confidence            888 77

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.15  E-value=1.1e-09  Score=116.52  Aligned_cols=140  Identities=9%  Similarity=0.049  Sum_probs=103.6

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEE--EcCCCCEEEEE--------------
Q 005473          552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR--FSPSLSRLATS--------------  615 (695)
Q Consensus       552 ~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~--~spdg~~LaTg--------------  615 (695)
                      .++...+.++.|+|||+.|+.++.++.|++||+.+++....+..+...+....  ++|++.+++..              
T Consensus        77 ~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~  156 (388)
T 3pe7_A           77 EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWK  156 (388)
T ss_dssp             CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHH
T ss_pred             eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccc
Confidence            44555555788999999999999999999999999988777776766665444  48999988743              


Q ss_pred             --------eCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEec-CCCeEEEEEeC-----CCcEEEEECCCCeEEEEEec
Q 005473          616 --------SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDN-----NSEIRYWSINNGSCAGVFKN  681 (695)
Q Consensus       616 --------s~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fsp-dg~~llaSgs~-----Dg~IriWDl~tg~~v~~~~~  681 (695)
                              ..+..|++||+.++.  +..+..+...+..+.|+| ||..++++...     +..|.+||+..++ +..+..
T Consensus       157 ~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~  233 (388)
T 3pe7_A          157 KFHEFYFTKPCCRLMRVDLKTGE--STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-MRKVKT  233 (388)
T ss_dssp             HHHHHGGGCCCEEEEEEETTTCC--EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-CEESCC
T ss_pred             hhhhhhccCCcceEEEEECCCCc--eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-eEEeee
Confidence                    234689999999875  345555677899999999 98866655442     3378888877554 444444


Q ss_pred             CC--CcEEEEEEeCCC
Q 005473          682 FF--ESFVSVRVVQPR  695 (695)
Q Consensus       682 h~--~~VtsVaf~sPd  695 (695)
                      +.  ..+..++| +||
T Consensus       234 ~~~~~~~~~~~~-spd  248 (388)
T 3pe7_A          234 HAEGESCTHEFW-VPD  248 (388)
T ss_dssp             CCTTEEEEEEEE-CTT
T ss_pred             CCCCcccccceE-CCC
Confidence            44  35788899 986

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.12  E-value=2.9e-09  Score=114.42  Aligned_cols=87  Identities=15%  Similarity=0.255  Sum_probs=69.6

Q ss_pred             EEEcCCCCEEEEEeC-----------CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 005473          603 VRFSPSLSRLATSSA-----------DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (695)
Q Consensus       603 v~~spdg~~LaTgs~-----------DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~  671 (695)
                      ++|+|++++++++..           +.+|.+||+.+.+. +.++..+.  +.+++|+|||+.++ +++. +.|.+||..
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~-v~~i~~~~--p~~ia~spdg~~l~-v~n~-~~v~v~D~~  333 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR-VARIPGRD--ALSMTIDQQRNLML-TLDG-GNVNVYDIS  333 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE-EEEEECTT--CCEEEEETTTTEEE-EECS-SCEEEEECS
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcE-EEEEecCC--eeEEEECCCCCEEE-EeCC-CeEEEEECC
Confidence            567788777766542           34899999998664 77887776  99999999999555 5554 999999999


Q ss_pred             CC--eEEEEEecCCCcEEEEEEeCCC
Q 005473          672 NG--SCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       672 tg--~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ++  +++..+..+......|+| +|+
T Consensus       334 t~~l~~~~~i~~~G~~P~~~~~-~p~  358 (361)
T 2oiz_A          334 QPEPKLLRTIEGAAEASLQVQF-HPV  358 (361)
T ss_dssp             SSSCEEEEEETTSCSSEEEEEE-CCC
T ss_pred             CCcceeeEEeccCCCCcEEEEe-cCC
Confidence            99  999998766667788999 986

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.10  E-value=6.7e-09  Score=109.55  Aligned_cols=175  Identities=13%  Similarity=0.196  Sum_probs=121.0

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcC-CCCEEEEEe-CCCcEEEEEC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGG-HDKKAVLWCT  584 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fsp-dg~~LaSgs-~Dg~V~IWDl  584 (695)
                      +++++.+.++.|+.|+..........+.....  .+       .-.++.....+|+|+| +++++++.+ .++.|++|| 
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~--~g-------~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-  172 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQ--PG-------SDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-  172 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTB--CC-------CSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCC--CC-------CCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-
Confidence            57777777888888864322100000000000  00       0023455689999999 788888876 689999999 


Q ss_pred             CCCeEEEEeccc----------CCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeEEEEe--cCCCCeEEEEEecC
Q 005473          585 ESFTVKSTLEEH----------TQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFT--GHSTTVMSLDFHPS  651 (695)
Q Consensus       585 ~t~~~~~~l~~H----------~~~V~~v~~spd-g~~LaTgs~DgtIrvWDl~t~~~~l~~~~--gh~~~V~sl~fspd  651 (695)
                      .+++.+..+...          -.....|+++|+ +.++++...+++|++||..+++. +..+.  .+...+.+++|+| 
T Consensus       173 ~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~-~~~~~~~~~~~~~~~~~~~p-  250 (329)
T 3fvz_A          173 PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF-VREIKHASFGRNVFAISYIP-  250 (329)
T ss_dssp             TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECCTTTTTCEEEEEEET-
T ss_pred             CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE-EEEEeccccCCCcceeeecC-
Confidence            567777776432          234889999998 66777777899999999997664 66663  4567789999999 


Q ss_pred             CCeEEEEE-------eCCCcEEEEECCCCeEEEEEe---cCCCcEEEEEEeCCC
Q 005473          652 KEDLLCSC-------DNNSEIRYWSINNGSCAGVFK---NFFESFVSVRVVQPR  695 (695)
Q Consensus       652 g~~llaSg-------s~Dg~IriWDl~tg~~v~~~~---~h~~~VtsVaf~sPd  695 (695)
                      + .++++.       ..+..|++||+.+++.+..+.   ++...+..|+| +|+
T Consensus       251 g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~-~~d  302 (329)
T 3fvz_A          251 G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVA-SED  302 (329)
T ss_dssp             T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEE-CTT
T ss_pred             C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEE-CCC
Confidence            2 233333       334589999999999999984   67778899999 885

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.09  E-value=1.1e-09  Score=116.56  Aligned_cols=145  Identities=12%  Similarity=0.012  Sum_probs=109.8

Q ss_pred             eEEEecCCCCCeEE-----EEEcCCCCEEEEEeC-CCc--EEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCC
Q 005473          547 EFQLIPASTSKVES-----CHFSPDGKLLATGGH-DKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD  618 (695)
Q Consensus       547 ~v~~l~~H~~~V~~-----v~fspdg~~LaSgs~-Dg~--V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~D  618 (695)
                      .+..+..|...+..     ++|+|||++|+.++. ++.  |++||+.+++......+|...+..++|+|+++.|+.++.+
T Consensus        22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~  101 (388)
T 3pe7_A           22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG  101 (388)
T ss_dssp             EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred             ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence            44556666655555     889999999988887 664  8888999998887777777777678899999999999999


Q ss_pred             CeEEEEECCCCCeeEEEEecCCCCeEEEE--EecCCCeEEEEE---------------------eCCCcEEEEECCCCeE
Q 005473          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLD--FHPSKEDLLCSC---------------------DNNSEIRYWSINNGSC  675 (695)
Q Consensus       619 gtIrvWDl~t~~~~l~~~~gh~~~V~sl~--fspdg~~llaSg---------------------s~Dg~IriWDl~tg~~  675 (695)
                      +.|++||+.+++. ...+..+...+....  ++|++..+++..                     +.+..|++||+.+++.
T Consensus       102 ~~l~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~  180 (388)
T 3pe7_A          102 RNLMRVDLATLEE-NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES  180 (388)
T ss_dssp             TEEEEEETTTCCE-EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred             CeEEEEECCCCcc-eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence            9999999998764 445555666564444  488988554321                     2347899999999865


Q ss_pred             EEEEecCCCcEEEEEEeCC
Q 005473          676 AGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       676 v~~~~~h~~~VtsVaf~sP  694 (695)
                      .. +..+...+..++| +|
T Consensus       181 ~~-l~~~~~~~~~~~~-sp  197 (388)
T 3pe7_A          181 TV-ILQENQWLGHPIY-RP  197 (388)
T ss_dssp             EE-EEEESSCEEEEEE-ET
T ss_pred             EE-eecCCccccccEE-CC
Confidence            44 4456677899999 88

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.07  E-value=3.4e-10  Score=132.96  Aligned_cols=115  Identities=17%  Similarity=0.103  Sum_probs=94.4

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCC-----eEEEEEcCCCCEEEEEeCC---------CeEE
Q 005473          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----ITDVRFSPSLSRLATSSAD---------RTVR  622 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~-----V~~v~~spdg~~LaTgs~D---------gtIr  622 (695)
                      ...++.|+|||++|+++  |++|++||+.++++...+.+|...     ..++.|||||++|+.++.+         +.++
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            46689999999999886  999999999999988888877643     2447899999999998876         5567


Q ss_pred             EEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEE
Q 005473          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG  677 (695)
Q Consensus       623 vWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~  677 (695)
                      +||+.++.  +..+..|.+.+..++|+|||+.|+ .+ .|+.|++||+.++++..
T Consensus        96 ~~d~~~~~--~~~l~~~~~~~~~~~~SPdG~~la-~~-~~~~i~~~~~~~~~~~~  146 (740)
T 4a5s_A           96 IYDLNKRQ--LITEERIPNNTQWVTWSPVGHKLA-YV-WNNDIYVKIEPNLPSYR  146 (740)
T ss_dssp             EEETTTTE--ECCSSCCCTTEEEEEECSSTTCEE-EE-ETTEEEEESSTTSCCEE
T ss_pred             EEECCCCc--EEEcccCCCcceeeEECCCCCEEE-EE-ECCeEEEEECCCCceEE
Confidence            99999865  345677788899999999999665 44 37899999999887654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.05  E-value=1.9e-08  Score=102.79  Aligned_cols=136  Identities=11%  Similarity=0.232  Sum_probs=104.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 005473          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (695)
Q Consensus       554 H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~--~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~  631 (695)
                      +...+.+++++++|+++++...++.|++||.. ++.+..+.  ++...+.+|++++++.++++...++.|++||... . 
T Consensus       119 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~-  195 (286)
T 1q7f_A          119 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-Q-  195 (286)
T ss_dssp             TCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-C-
T ss_pred             cCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-C-
Confidence            44568999999999988887788999999965 55555553  4556789999999998888888899999999854 3 


Q ss_pred             eEEEEecC--CCCeEEEEEecCCCeEEEEEeCCC-cEEEEECCCCeEEEEEecCCC--cEEEEEEeCCC
Q 005473          632 SLRTFTGH--STTVMSLDFHPSKEDLLCSCDNNS-EIRYWSINNGSCAGVFKNFFE--SFVSVRVVQPR  695 (695)
Q Consensus       632 ~l~~~~gh--~~~V~sl~fspdg~~llaSgs~Dg-~IriWDl~tg~~v~~~~~h~~--~VtsVaf~sPd  695 (695)
                      .+..+..+  ...+..++++++|. ++++...++ .|++||. +++.+..+..+..  .+.+|+| +|+
T Consensus       196 ~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~-~~~  261 (286)
T 1q7f_A          196 YLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVAL-MDD  261 (286)
T ss_dssp             EEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEE-ETT
T ss_pred             EEEEEccCCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEE-CCC
Confidence            35556443  36789999999986 666776675 9999995 5777877775543  4678998 775

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.02  E-value=9.1e-09  Score=120.17  Aligned_cols=135  Identities=7%  Similarity=-0.023  Sum_probs=100.0

Q ss_pred             eEEEEEcCCCCEEEEEeCCCc----------------EEEEECCCCeE--EEEe--cccCCCeEEEEEcCCCCEEEEEeC
Q 005473          558 VESCHFSPDGKLLATGGHDKK----------------AVLWCTESFTV--KSTL--EEHTQWITDVRFSPSLSRLATSSA  617 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~Dg~----------------V~IWDl~t~~~--~~~l--~~H~~~V~~v~~spdg~~LaTgs~  617 (695)
                      +.+++|+|||+.|+.++.|+.                |++|++.++..  ...+  ..|...+..+.|+|||++|+.++.
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~  252 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR  252 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred             cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEE
Confidence            678999999999999988776                99999987652  2233  335667889999999999887764


Q ss_pred             -----CCeEEEEECCC------CCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC---CcEEEEECCCCe--EEEEEec
Q 005473          618 -----DRTVRVWDTEN------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGS--CAGVFKN  681 (695)
Q Consensus       618 -----DgtIrvWDl~t------~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D---g~IriWDl~tg~--~v~~~~~  681 (695)
                           +..|++||+.+      +...+..+..+...+.. .|+|+|..+++.+..+   +.|.+||+.++.  ....+..
T Consensus       253 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~  331 (710)
T 2xdw_A          253 EGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP  331 (710)
T ss_dssp             CSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC
T ss_pred             ccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccC
Confidence                 56899999986      43235666777766665 4889999887776644   379999998874  2345555


Q ss_pred             CCC--cEEEEEEeCC
Q 005473          682 FFE--SFVSVRVVQP  694 (695)
Q Consensus       682 h~~--~VtsVaf~sP  694 (695)
                      |..  .|..++| +|
T Consensus       332 ~~~~~~~~~~~~-~~  345 (710)
T 2xdw_A          332 EHEKDVLEWVAC-VR  345 (710)
T ss_dssp             CCSSCEEEEEEE-ET
T ss_pred             CCCCCeEEEEEE-Ec
Confidence            544  6777888 53

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.01  E-value=4.7e-08  Score=99.84  Aligned_cols=169  Identities=8%  Similarity=0.056  Sum_probs=117.7

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEE-cCCCCEEEEEeC-CCcEEEEEC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHF-SPDGKLLATGGH-DKKAVLWCT  584 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~f-spdg~~LaSgs~-Dg~V~IWDl  584 (695)
                      +++++.+.++.|.+|+....      ....+..        .....+|...+.++++ .++++++++... ++.|++|| 
T Consensus        42 ~l~v~~~~~~~i~~~d~~g~------~~~~~~~--------~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-  106 (286)
T 1q7f_A           42 DIIVADTNNHRIQIFDKEGR------FKFQFGE--------CGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-  106 (286)
T ss_dssp             CEEEEEGGGTEEEEECTTSC------EEEEECC--------BSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-
T ss_pred             CEEEEECCCCEEEEECCCCc------EEEEecc--------cCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-
Confidence            56666677888999854211      0000000        0001234456899999 567776666543 88999999 


Q ss_pred             CCCeEEEEec-ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe--cCCCCeEEEEEecCCCeEEEEEeC
Q 005473          585 ESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDN  661 (695)
Q Consensus       585 ~t~~~~~~l~-~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~--gh~~~V~sl~fspdg~~llaSgs~  661 (695)
                      .+++.+..+. .+...+.+++++|+++++++...++.|++||... .. +..+.  ++...+.+++++++|. ++++...
T Consensus       107 ~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~-~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~  183 (286)
T 1q7f_A          107 QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NV-LHKFGCSKHLEFPNGVVVNDKQE-IFISDNR  183 (286)
T ss_dssp             TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CE-EEEEECTTTCSSEEEEEECSSSE-EEEEEGG
T ss_pred             CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CE-EEEeCCCCccCCcEEEEECCCCC-EEEEECC
Confidence            5667766664 3456789999999999888888889999999753 33 44443  4456789999999987 7778778


Q ss_pred             CCcEEEEECCCCeEEEEEecC--CCcEEEEEEeCCC
Q 005473          662 NSEIRYWSINNGSCAGVFKNF--FESFVSVRVVQPR  695 (695)
Q Consensus       662 Dg~IriWDl~tg~~v~~~~~h--~~~VtsVaf~sPd  695 (695)
                      ++.|++||. +++.+..+..+  ...+..|+| +|+
T Consensus       184 ~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~-d~~  217 (286)
T 1q7f_A          184 AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGI-NSN  217 (286)
T ss_dssp             GTEEEEEET-TCCEEEEESCTTTSCSEEEEEE-CTT
T ss_pred             CCEEEEEcC-CCCEEEEEccCCccCCCcEEEE-CCC
Confidence            999999997 46677777543  357789998 774

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.00  E-value=7.4e-08  Score=100.51  Aligned_cols=166  Identities=10%  Similarity=0.069  Sum_probs=111.7

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCC----CcEEEE
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD----KKAVLW  582 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~D----g~V~IW  582 (695)
                      ++++++..++.|.+|+...+.                 ..  .....+...|.+++|+++|++++++..+    +.|.+|
T Consensus        57 ~l~~~~~~~~~i~~~d~~~~~-----------------~~--~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~  117 (333)
T 2dg1_A           57 QLFLLDVFEGNIFKINPETKE-----------------IK--RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAA  117 (333)
T ss_dssp             CEEEEETTTCEEEEECTTTCC-----------------EE--EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCc-----------------EE--EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEE
Confidence            556667778888888543221                 11  1112345679999999999988887766    689999


Q ss_pred             ECCCCeEEEEec--ccCCCeEEEEEcCCCCEEEEEeC------CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCe
Q 005473          583 CTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSA------DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED  654 (695)
Q Consensus       583 Dl~t~~~~~~l~--~H~~~V~~v~~spdg~~LaTgs~------DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~  654 (695)
                      |.+++.....+.  .+...+.+++++|++.++++...      .+.|..||.+++..  ..+..+...+..++|+|++..
T Consensus       118 d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~i~~~~dg~~  195 (333)
T 2dg1_A          118 TENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV--TPIIQNISVANGIALSTDEKV  195 (333)
T ss_dssp             CTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE--EEEEEEESSEEEEEECTTSSE
T ss_pred             eCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEE--EEeecCCCcccceEECCCCCE
Confidence            998877654443  34567999999999988877654      35677777665442  233333346889999999987


Q ss_pred             EEEEEeCCCcEEEEECCC-CeEEEE--------EecCCCcEEEEEEeCCC
Q 005473          655 LLCSCDNNSEIRYWSINN-GSCAGV--------FKNFFESFVSVRVVQPR  695 (695)
Q Consensus       655 llaSgs~Dg~IriWDl~t-g~~v~~--------~~~h~~~VtsVaf~sPd  695 (695)
                      ++++.+.++.|++||+++ +..+..        +.++ ..+..|++ +|+
T Consensus       196 l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~-d~~  243 (333)
T 2dg1_A          196 LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCI-DSD  243 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEE-BTT
T ss_pred             EEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEE-CCC
Confidence            777777789999999964 433221        1122 35677777 654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.98  E-value=1.9e-08  Score=104.96  Aligned_cols=144  Identities=8%  Similarity=0.070  Sum_probs=105.5

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCC----CeEEE
Q 005473          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRV  623 (695)
Q Consensus       548 v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~D----gtIrv  623 (695)
                      +..+..+...+.+++|+++|++++++..++.|++||..+++.......+...|.+++|+|+++++++...+    +.|.+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~  116 (333)
T 2dg1_A           37 WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA  116 (333)
T ss_dssp             EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred             eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEE
Confidence            44556666778999999999988888889999999999887765554567889999999999888887666    68999


Q ss_pred             EECCCCCeeEEEEe--cCCCCeEEEEEecCCCeEEEEEeC------CCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          624 WDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       624 WDl~t~~~~l~~~~--gh~~~V~sl~fspdg~~llaSgs~------Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ||.+++.. ...+.  .+...+.+++++|+|. ++++...      .+.|..||..+++..... .+...+..++| +|+
T Consensus       117 ~d~~~~~~-~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~-~~d  192 (333)
T 2dg1_A          117 ATENGDNL-QDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIAL-STD  192 (333)
T ss_dssp             ECTTSCSC-EEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEE-CTT
T ss_pred             EeCCCCEE-EEEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEE-CCC
Confidence            99987654 22232  2445789999999987 5545443      356777776655544333 23345678888 775

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.96  E-value=4.4e-08  Score=100.89  Aligned_cols=176  Identities=13%  Similarity=0.044  Sum_probs=121.6

Q ss_pred             CCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeE
Q 005473          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE  559 (695)
Q Consensus       480 ~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~  559 (695)
                      .....+.|++++.              .++.++..++.|..|+...+                     +..+..+...+.
T Consensus        28 ~~~eg~~~d~~g~--------------~l~~~~~~~~~i~~~~~~~~---------------------~~~~~~~~~~~~   72 (296)
T 3e5z_A           28 TWTEGPVYVPARS--------------AVIFSDVRQNRTWAWSDDGQ---------------------LSPEMHPSHHQN   72 (296)
T ss_dssp             SSEEEEEEEGGGT--------------EEEEEEGGGTEEEEEETTSC---------------------EEEEESSCSSEE
T ss_pred             ccccCCeEeCCCC--------------EEEEEeCCCCEEEEEECCCC---------------------eEEEECCCCCcc
Confidence            3445667777663              36777788888888854211                     123344566799


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccc----CCCeEEEEEcCCCCEEEEE----e-------------CC
Q 005473          560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH----TQWITDVRFSPSLSRLATS----S-------------AD  618 (695)
Q Consensus       560 ~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H----~~~V~~v~~spdg~~LaTg----s-------------~D  618 (695)
                      +++|+++|+++++...++.|.+||..+++........    ...+.+++++|+|+++++.    +             ..
T Consensus        73 ~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~  152 (296)
T 3e5z_A           73 GHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPG  152 (296)
T ss_dssp             EEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSS
T ss_pred             eeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCC
Confidence            9999999998887777789999999887765443322    2356789999999988873    2             13


Q ss_pred             CeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC-CCeE---EEEEecCCCcEEEEEEeCC
Q 005473          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSC---AGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       619 gtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~-tg~~---v~~~~~h~~~VtsVaf~sP  694 (695)
                      +.|..||.. +.  +..+..+...+..++|+|+++.+ ++.+.++.|++||+. +++.   ...+..+...+..|+| +|
T Consensus       153 ~~l~~~~~~-g~--~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~-d~  227 (296)
T 3e5z_A          153 RWVFRLAPD-GT--LSAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRV-DA  227 (296)
T ss_dssp             CEEEEECTT-SC--EEEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEE-BT
T ss_pred             cEEEEECCC-CC--EEEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEE-CC
Confidence            456666655 33  44555666778999999999966 788888999999997 5554   3344334445566777 65


Q ss_pred             C
Q 005473          695 R  695 (695)
Q Consensus       695 d  695 (695)
                      +
T Consensus       228 ~  228 (296)
T 3e5z_A          228 G  228 (296)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.93  E-value=2.2e-08  Score=104.84  Aligned_cols=125  Identities=10%  Similarity=0.107  Sum_probs=87.3

Q ss_pred             eEEEEEcCCCCEEEEEeCC---------------------------CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCC
Q 005473          558 VESCHFSPDGKLLATGGHD---------------------------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS  610 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~D---------------------------g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~  610 (695)
                      |.+++|+|||+.|+.++.+                           ..|++||+.+++.+..+.. . .+..++|+|++ 
T Consensus       106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-  182 (347)
T 2gop_A          106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-  182 (347)
T ss_dssp             EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-
T ss_pred             ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-
Confidence            8999999999988887642                           5699999998887455554 3 78899999999 


Q ss_pred             EEEEEeCCC-------eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC-------CcEEEEECCCCeEE
Q 005473          611 RLATSSADR-------TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-------SEIRYWSINNGSCA  676 (695)
Q Consensus       611 ~LaTgs~Dg-------tIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D-------g~IriWDl~tg~~v  676 (695)
                      ++++++.+.       ...||.+++ .. +..+..+ ..+.++  +|+|+.+++.+..+       ..|++||  ++++.
T Consensus       183 ~~~~~~~~~~~~~~~~~~~l~~~d~-~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~  255 (347)
T 2gop_A          183 IVVNVPHREIIPQYFKFWDIYIWED-GK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM  255 (347)
T ss_dssp             EEEEEECCCSSCCSSCCEEEEEEET-TE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE
T ss_pred             EEEEEecccccccccccccEEEeCC-Cc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE
Confidence            888876542       344554443 33 3444444 455554  99999776655432       4788888  66665


Q ss_pred             EEEecCCCcEEE-EEEeC
Q 005473          677 GVFKNFFESFVS-VRVVQ  693 (695)
Q Consensus       677 ~~~~~h~~~Vts-Vaf~s  693 (695)
                      ....+|...|.. +.| +
T Consensus       256 ~l~~~~~~~~~~~~~~-s  272 (347)
T 2gop_A          256 GILDEVDRGVGQAKIK-D  272 (347)
T ss_dssp             ESSTTCCSEEEEEEEE-T
T ss_pred             eccccCCcccCCccEE-c
Confidence            555566777876 777 5

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.93  E-value=2.4e-08  Score=107.29  Aligned_cols=80  Identities=15%  Similarity=0.219  Sum_probs=63.0

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCeEEEEeccc------CCCeEEEEEcCCCCEE
Q 005473          549 QLIPASTSKVESCHFSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEH------TQWITDVRFSPSLSRL  612 (695)
Q Consensus       549 ~~l~~H~~~V~~v~fspdg~~LaSgs~----------Dg~V~IWDl~t~~~~~~l~~H------~~~V~~v~~spdg~~L  612 (695)
                      ..+..+..+  .++|+|||++|+++..          +++|.+||+.+.+.+..+...      ......++|+|+|++|
T Consensus        45 ~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l  122 (361)
T 2oiz_A           45 GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFI  122 (361)
T ss_dssp             EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEE
T ss_pred             EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEE
Confidence            344555444  8999999999999863          678999999999888877532      3456789999999999


Q ss_pred             EEEeC--CCeEEEEECCCCC
Q 005473          613 ATSSA--DRTVRVWDTENPD  630 (695)
Q Consensus       613 aTgs~--DgtIrvWDl~t~~  630 (695)
                      ++++.  +++|.+||+++.+
T Consensus       123 ~v~n~~~~~~v~v~d~~~~~  142 (361)
T 2oiz_A          123 VLQNASPATSIGIVDVAKGD  142 (361)
T ss_dssp             EEEEESSSEEEEEEETTTTE
T ss_pred             EEECCCCCCeEEEEECCCCc
Confidence            88864  5789999987654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.90  E-value=7.8e-08  Score=98.98  Aligned_cols=128  Identities=13%  Similarity=0.084  Sum_probs=94.9

Q ss_pred             CeEEEEEcCCCCEEEEEeC-----------------CCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCC
Q 005473          557 KVESCHFSPDGKLLATGGH-----------------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR  619 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~-----------------Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~Dg  619 (695)
                      .+.+++++++|+++++.+.                 .+.|..+|.. ++ +..+..+...+..++|+|+++.|++.+.++
T Consensus       116 ~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~  193 (296)
T 3e5z_A          116 SPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDN  193 (296)
T ss_dssp             CCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTT
T ss_pred             CCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCC
Confidence            4678999999998887321                 2355555554 44 344555667789999999999887777889


Q ss_pred             eEEEEECC-CCCe-e-EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473          620 TVRVWDTE-NPDY-S-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       620 tIrvWDl~-t~~~-~-l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf  691 (695)
                      .|++||+. ++.. . ...+..+...+.+++++++|. ++++.  ++.|.+||.. ++.+..+..+.. +++++|
T Consensus       194 ~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f  263 (296)
T 3e5z_A          194 ATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCF  263 (296)
T ss_dssp             EEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEE
T ss_pred             eEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEE
Confidence            99999997 3332 0 233334556678899999997 55455  7899999986 888888888877 899998

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.90  E-value=9.6e-08  Score=111.47  Aligned_cols=141  Identities=11%  Similarity=0.052  Sum_probs=103.4

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeC-----CCcEEEEECCC------Ce-EEEEecccCCCeEEEEEcCCCCEEEEEeCC-
Q 005473          552 PASTSKVESCHFSPDGKLLATGGH-----DKKAVLWCTES------FT-VKSTLEEHTQWITDVRFSPSLSRLATSSAD-  618 (695)
Q Consensus       552 ~~H~~~V~~v~fspdg~~LaSgs~-----Dg~V~IWDl~t------~~-~~~~l~~H~~~V~~v~~spdg~~LaTgs~D-  618 (695)
                      ..|...+..+.|+|||++|+.++.     +..|++||+.+      +. ....+..+...+.. .|+|+|..|+..+.+ 
T Consensus       229 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~  307 (710)
T 2xdw_A          229 PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRH  307 (710)
T ss_dssp             TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTT
T ss_pred             CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCC
Confidence            345666889999999999888765     56899999976      43 45566667666655 488888877666543 


Q ss_pred             ---CeEEEEECCCCCe-eEEEEecCCC--CeEEEEEecCCCeEEEEEeCCCc--EEEEECCCCeEEEEEecCCCcEEEEE
Q 005473          619 ---RTVRVWDTENPDY-SLRTFTGHST--TVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKNFFESFVSVR  690 (695)
Q Consensus       619 ---gtIrvWDl~t~~~-~l~~~~gh~~--~V~sl~fspdg~~llaSgs~Dg~--IriWDl~tg~~v~~~~~h~~~VtsVa  690 (695)
                         +.|.+||+.++.. ....+..|..  .|.+++|+++ ..++++...|+.  |++||+.+|+++..+..+.+.|..++
T Consensus       308 ~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~  386 (710)
T 2xdw_A          308 SPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRS-NFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYS  386 (710)
T ss_dssp             CTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETT-TEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEE
T ss_pred             CCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcC-CEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEe
Confidence               3699999987642 2345555544  5788999855 457888888884  66678778888888888877888888


Q ss_pred             EeCCC
Q 005473          691 VVQPR  695 (695)
Q Consensus       691 f~sPd  695 (695)
                      | +|+
T Consensus       387 ~-s~d  390 (710)
T 2xdw_A          387 G-QKK  390 (710)
T ss_dssp             C-CTT
T ss_pred             c-CCC
Confidence            8 764

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.89  E-value=8.5e-08  Score=99.33  Aligned_cols=159  Identities=13%  Similarity=0.027  Sum_probs=118.6

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~-~~V~~v~fspdg~~LaSgs~Dg~V~IWDl  584 (695)
                      ++++++++.|+.|.+|+..++                   +.+..+..+. ..+.++.++|+|++|+  +.++.|..||.
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG-------------------~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~   63 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTK-------------------EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR   63 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTT-------------------EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT
T ss_pred             CcEEEeeCCCCEEEEEECCCC-------------------eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC
Confidence            378999999999999965333                   2233344444 4688999999999888  45788999999


Q ss_pred             CCCeEEEEecccC-CCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCeeEEEEec------CCCCeEEEEEecCCCeEE
Q 005473          585 ESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTG------HSTTVMSLDFHPSKEDLL  656 (695)
Q Consensus       585 ~t~~~~~~l~~H~-~~V~~v~~spdg~~LaTgs~-DgtIrvWDl~t~~~~l~~~~g------h~~~V~sl~fspdg~~ll  656 (695)
                       +++.+..+..+. ..+.++.+.++|++|++.+. ++.|..+|. +++. +..+..      +......+.+.++|. ++
T Consensus        64 -~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~-l~~~~~~~~~~~~~~~~~~v~~~~~G~-~l  139 (276)
T 3no2_A           64 -DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEV-LSKTEFETGIERPHAQFRQINKNKKGN-YL  139 (276)
T ss_dssp             -TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCE-EEEEEECCSCSSGGGSCSCCEECTTSC-EE
T ss_pred             -CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCE-EEEEeccCCCCcccccccCceECCCCC-EE
Confidence             899998887653 57889999999999999887 778888886 4453 444431      112345667889988 66


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473          657 CSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       657 aSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf  691 (695)
                      ++...++.|.+||.. |+.+.++..+. .+.++.+
T Consensus       140 v~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~  172 (276)
T 3no2_A          140 VPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAF  172 (276)
T ss_dssp             EEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEE
T ss_pred             EEecCCCEEEEECCC-CCEEEEEECCC-CccceeE
Confidence            688889999999988 99999988653 3344444

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.87  E-value=3.9e-08  Score=114.55  Aligned_cols=173  Identities=11%  Similarity=-0.009  Sum_probs=116.2

Q ss_pred             CceEEEEecCCCccccccCCccCCCCcEEE-----EeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCC
Q 005473          481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVD-----DGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST  555 (695)
Q Consensus       481 ~~s~l~~~~dg~~~la~s~~~l~~~~~~la-----sgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~  555 (695)
                      ....+.|+||+.               +++     .|+.+..|++|+...+....          .       ..+... 
T Consensus       122 ~~~~~~~SPDG~---------------~la~~~~~~G~~~~~i~v~dl~tg~~~~----------~-------~~~~~~-  168 (695)
T 2bkl_A          122 SLGTWAVSWDGK---------------KVAFAQKPNAADEAVLHVIDVDSGEWSK----------V-------DVIEGG-  168 (695)
T ss_dssp             EEEEEEECTTSS---------------EEEEEEEETTCSCCEEEEEETTTCCBCS----------S-------CCBSCC-
T ss_pred             EEEEEEECCCCC---------------EEEEEECCCCCceEEEEEEECCCCCCcC----------C-------cccCcc-
Confidence            456778888874               334     45566789999775543100          0       001111 


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCc-------------EEEEECCCCe----EEEEecccCCCeEEEEEcCCCCEEEEEeCC
Q 005473          556 SKVESCHFSPDGKLLATGGHDKK-------------AVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSAD  618 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs~Dg~-------------V~IWDl~t~~----~~~~l~~H~~~V~~v~~spdg~~LaTgs~D  618 (695)
                       ....++|+|||+.|+.++.|..             |++|++.++.    ++.....|...+..+.|+|||++|+.++.+
T Consensus       169 -~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~  247 (695)
T 2bkl_A          169 -KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILR  247 (695)
T ss_dssp             -TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEE
T ss_pred             -cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeC
Confidence             1257999999999999998876             9999998776    333334456789999999999998887766


Q ss_pred             C----eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEe---CCCcEEEEECCCCeE---EEEEecC-CCcEE
Q 005473          619 R----TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNGSC---AGVFKNF-FESFV  687 (695)
Q Consensus       619 g----tIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs---~Dg~IriWDl~tg~~---v~~~~~h-~~~Vt  687 (695)
                      +    .|++||..++.  ...+..+...+....| ++|. +++++.   .++.|.+||+.++..   ...+..+ ...|.
T Consensus       248 ~~~~~~l~~~~~~~~~--~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~  323 (695)
T 2bkl_A          248 GWSENDVYWKRPGEKD--FRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLL  323 (695)
T ss_dssp             TTTEEEEEEECTTCSS--CEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEE
T ss_pred             CCCceEEEEEcCCCCc--eEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEE
Confidence            5    67777765543  4555566666777777 6777 776665   358999999987753   3333333 44567


Q ss_pred             EEEE
Q 005473          688 SVRV  691 (695)
Q Consensus       688 sVaf  691 (695)
                      .++|
T Consensus       324 ~~~~  327 (695)
T 2bkl_A          324 SVSI  327 (695)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7776

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.87  E-value=5.5e-09  Score=110.87  Aligned_cols=133  Identities=10%  Similarity=0.039  Sum_probs=94.3

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEE-------------------EEEcCCCCEEEEE----
Q 005473          559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-------------------VRFSPSLSRLATS----  615 (695)
Q Consensus       559 ~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~-------------------v~~spdg~~LaTg----  615 (695)
                      .++.|+|||++|+.++.++.|++||+.+++.......+.....+                   +.|+|+++.++.+    
T Consensus        84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~  163 (396)
T 3c5m_A           84 FGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYH  163 (396)
T ss_dssp             TTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHH
T ss_pred             ccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeecc
Confidence            34889999999999999999999999988877666655544333                   4567777766554    


Q ss_pred             -eCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEec-CCCeEEEEEeCC-----CcEEEEECCCCeEEEEEecC--CCcE
Q 005473          616 -SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKNF--FESF  686 (695)
Q Consensus       616 -s~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fsp-dg~~llaSgs~D-----g~IriWDl~tg~~v~~~~~h--~~~V  686 (695)
                       ..+..|++||+.++..  ..+..+...+..+.|+| ++..+++++...     ..|.+||+..++... +..+  ...+
T Consensus       164 ~~~~~~l~~~d~~~g~~--~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~  240 (396)
T 3c5m_A          164 TNPTCRLIKVDIETGEL--EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKEHAEGESC  240 (396)
T ss_dssp             TCCCEEEEEEETTTCCE--EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSCCCTTEEE
T ss_pred             CCCcceEEEEECCCCcE--EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eeccCCCccc
Confidence             3567899999988664  33335667899999999 777555544322     468999987654333 3333  2357


Q ss_pred             EEEEEeCCC
Q 005473          687 VSVRVVQPR  695 (695)
Q Consensus       687 tsVaf~sPd  695 (695)
                      ..++| +|+
T Consensus       241 ~~~~~-spd  248 (396)
T 3c5m_A          241 THEFW-IPD  248 (396)
T ss_dssp             EEEEE-CTT
T ss_pred             cceEE-CCC
Confidence            88899 886

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.87  E-value=1.3e-07  Score=95.28  Aligned_cols=136  Identities=6%  Similarity=-0.050  Sum_probs=98.2

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE
Q 005473          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~  635 (695)
                      ..+.+++++++|+++++.. ++.|.+||..+.............+.++++++++.++++...++.|.+||..+... ...
T Consensus        67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~-~~~  144 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ-TVL  144 (270)
T ss_dssp             CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC-EEC
T ss_pred             CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee-Eee
Confidence            4578899999999666655 88999999876544322223336789999999998888877789999998765433 222


Q ss_pred             EecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       636 ~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      .......+.+++++++|. ++++...++.|++||...+........+...+.+|++ +|+
T Consensus       145 ~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~-d~~  202 (270)
T 1rwi_B          145 PFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAV-DEA  202 (270)
T ss_dssp             CCCSCCSCCCEEECTTCC-EEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEE-CTT
T ss_pred             ccccCCCceeEEEeCCCC-EEEEECCCCEEEEEecCCCceEeecccCCCCceEEEE-CCC
Confidence            223334678999999987 7767777889999999876655443344466788888 764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.85  E-value=1.5e-07  Score=94.72  Aligned_cols=137  Identities=10%  Similarity=0.010  Sum_probs=100.5

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE
Q 005473          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~  635 (695)
                      ..+.+++++++|+++++...++.|.+||..+.............+.+|++++++.++++...++.|.+||...... ...
T Consensus       108 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~-~~~  186 (270)
T 1rwi_B          108 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ-VVL  186 (270)
T ss_dssp             SSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE-EEC
T ss_pred             CCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce-Eee
Confidence            4588999999999887777788999998765544333333345678999999998777777788999999987543 222


Q ss_pred             EecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       636 ~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ...+...+.+++++++|. ++++...++.|++||............+...+.+|+| +|+
T Consensus       187 ~~~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~-~~~  244 (270)
T 1rwi_B          187 PFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAV-DSD  244 (270)
T ss_dssp             CCSSCCSEEEEEECTTCC-EEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEE-CTT
T ss_pred             cccCCCCceEEEECCCCC-EEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEE-CCC
Confidence            233336789999999984 7777777889999998765443332234466788998 774

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.83  E-value=6.8e-08  Score=101.09  Aligned_cols=124  Identities=10%  Similarity=0.061  Sum_probs=87.0

Q ss_pred             CeEEEEEcCCCCEEEEEeCCC-------cEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCC--------CeE
Q 005473          557 KVESCHFSPDGKLLATGGHDK-------KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--------RTV  621 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~Dg-------~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~D--------gtI  621 (695)
                      .+.++.|+||| +++++..++       ...||.+++++. ..+..+ ..+..+  +|+|++|+.++.+        ..|
T Consensus       172 ~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l  246 (347)
T 2gop_A          172 RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKL  246 (347)
T ss_dssp             TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEE
T ss_pred             CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceE
Confidence            68899999999 888886652       345554445554 344444 555554  9999988877644        368


Q ss_pred             EEEECCCCCeeEEEEecCCCCeEE-EEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          622 RVWDTENPDYSLRTFTGHSTTVMS-LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       622 rvWDl~t~~~~l~~~~gh~~~V~s-l~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      ++||  ++. ......+|...+.. +.|+ ++  ++++++.++.++|| +.+++... +..+...|.+++| +|
T Consensus       247 ~~~d--~~~-~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~g~~~~-~~~~~~~v~~~~~-s~  311 (347)
T 2gop_A          247 YIYD--GKE-VMGILDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWDGEIKP-IAKGRHWIMGFDV-DE  311 (347)
T ss_dssp             EEEC--SSC-EEESSTTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EESSSEEE-EECSSSEEEEEEE-SS
T ss_pred             EEEC--CCc-eEeccccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcCCceEE-EecCCCeEEeeee-eC
Confidence            8888  433 23444556677886 8999 76  77788899999999 88666544 4455778899988 75

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.81  E-value=4.6e-09  Score=111.47  Aligned_cols=135  Identities=13%  Similarity=-0.007  Sum_probs=96.9

Q ss_pred             CeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE
Q 005473          557 KVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~D---g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l  633 (695)
                      .+.+++|+|||++|+.+..+   ..|++||+.+++......++...+..+.|+|++++|+.++.++.|++||+.++.. .
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~-~  115 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE-Q  115 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE-E
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc-E
Confidence            37788999999998777543   4688899998876544443333333488999999999999999999999988664 4


Q ss_pred             EEEecCCCCeEE-------------------EEEecCCCeEEEEE----eCCCcEEEEECCCCeEEEEEecCCCcEEEEE
Q 005473          634 RTFTGHSTTVMS-------------------LDFHPSKEDLLCSC----DNNSEIRYWSINNGSCAGVFKNFFESFVSVR  690 (695)
Q Consensus       634 ~~~~gh~~~V~s-------------------l~fspdg~~llaSg----s~Dg~IriWDl~tg~~v~~~~~h~~~VtsVa  690 (695)
                      ..+..+......                   ++|+|+++.+++..    ..+..|++||+.++++.... .+...+..++
T Consensus       116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~  194 (396)
T 3c5m_A          116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPI  194 (396)
T ss_dssp             EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEE
T ss_pred             EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccce
Confidence            444444443333                   35677777554332    45678999999988766555 4667788899


Q ss_pred             EeCC
Q 005473          691 VVQP  694 (695)
Q Consensus       691 f~sP  694 (695)
                      | +|
T Consensus       195 ~-sp  197 (396)
T 3c5m_A          195 Y-RP  197 (396)
T ss_dssp             E-ET
T ss_pred             E-CC
Confidence            9 88

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.79  E-value=2.4e-08  Score=108.82  Aligned_cols=124  Identities=17%  Similarity=0.156  Sum_probs=98.2

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-----------EEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 005473          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~-----------~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWD  625 (695)
                      .++.+++++...+|++|+.|+ ++||++....           ....+ .+.. |+.|+|  ++.+|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            589999999999999999986 6669865332           21222 3666 999999  88999998 889999999


Q ss_pred             CCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       626 l~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +++... ......|...|.++.+.+.  . +++++.||.|.+||+.++..+.    +...|+|++| +|+
T Consensus       113 v~sl~~-~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~W-Spk  173 (388)
T 1xip_A          113 LEELSE-FRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDV-TNS  173 (388)
T ss_dssp             SSSTTC-EEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEEE----EEESEEEEEE-CSS
T ss_pred             chhhhc-cCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCcccc----ccCCceEEEE-cCC
Confidence            988663 5566677888888877654  3 6678899999999999887654    4568999999 985

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.78  E-value=2.3e-06  Score=86.69  Aligned_cols=137  Identities=12%  Similarity=0.045  Sum_probs=100.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE-EEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 005473          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (695)
Q Consensus       554 H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~-~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~  632 (695)
                      +...+.+++++++|+++++...++.|.+||.. ++.. ..+......+.++++.+++.++++...++.|.+||. ++...
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~  132 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR  132 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE
Confidence            34568999999999988887778899999986 3332 222234567899999999988888777889999999 54542


Q ss_pred             EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEE-EecCCCcEEEEEEeCCC
Q 005473          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FKNFFESFVSVRVVQPR  695 (695)
Q Consensus       633 l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~-~~~h~~~VtsVaf~sPd  695 (695)
                      ......+...+.+++++++|. ++++...++.|.+||. +++.... +..+...+.+|++ +|+
T Consensus       133 ~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~-~~~  193 (299)
T 2z2n_A          133 EYELPNKGSYPSFITLGSDNA-LWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITK-GND  193 (299)
T ss_dssp             EEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE-CTT
T ss_pred             EecCCCCCCCCceEEEcCCCC-EEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEE-CCC
Confidence            223333456789999999986 6667666789999998 6665543 3334456788888 764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.75  E-value=2e-07  Score=98.43  Aligned_cols=130  Identities=13%  Similarity=0.117  Sum_probs=100.2

Q ss_pred             eEEEEEcCCCCEEEEEeCC----------CcEEEEECCCCeEEEEeccc-CCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 005473          558 VESCHFSPDGKLLATGGHD----------KKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~D----------g~V~IWDl~t~~~~~~l~~H-~~~V~~v~~spdg~~LaTgs~DgtIrvWDl  626 (695)
                      ...++++++|++++++..+          +.|.+||..+++.+..+... ......++|+|++++|+++..  .|.+||+
T Consensus       174 p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~  251 (328)
T 3dsm_A          174 PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPV  251 (328)
T ss_dssp             BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEET
T ss_pred             ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEEC
Confidence            5678999999977776655          78999999999887776532 246889999999999888754  8999999


Q ss_pred             CCCCeeEEE-EecCCCCeEEEEEecCCCeEEEEE----eCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473          627 ENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSC----DNNSEIRYWSINNGSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       627 ~t~~~~l~~-~~gh~~~V~sl~fspdg~~llaSg----s~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf  691 (695)
                      .+++..... +..+......++++|++..++++.    ..++.|.+||.. |+.+.++.....| ..++|
T Consensus       252 ~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P-~~~~~  319 (328)
T 3dsm_A          252 EADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIP-GAFCW  319 (328)
T ss_dssp             TCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESE-EEEEE
T ss_pred             CCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCc-ceEEE
Confidence            886642111 222245689999999767788887    678999999998 9999998865544 66776

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.74  E-value=1.4e-06  Score=99.69  Aligned_cols=165  Identities=9%  Similarity=-0.023  Sum_probs=120.2

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-  585 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~-  585 (695)
                      .++++...++.|.+|+....                   +.+..+... ..+.++.|+|||+++++++.|+.|.+||+. 
T Consensus       168 ~~~V~~~~~~~V~viD~~t~-------------------~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~  227 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGSTY-------------------EIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWM  227 (567)
T ss_dssp             EEEEEETTTTEEEEEETTTC-------------------CEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred             eEEEEeCCCCeEEEEECCCC-------------------eEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCC
Confidence            56677778899999965433                   223333332 246799999999999999999999999995 


Q ss_pred             -CCeEEEEecccCCCeEEEEEc----CCCCEEEEEeC-CCeEEEEECCCCCeeEEEEec----------C-CCCeEEEEE
Q 005473          586 -SFTVKSTLEEHTQWITDVRFS----PSLSRLATSSA-DRTVRVWDTENPDYSLRTFTG----------H-STTVMSLDF  648 (695)
Q Consensus       586 -t~~~~~~l~~H~~~V~~v~~s----pdg~~LaTgs~-DgtIrvWDl~t~~~~l~~~~g----------h-~~~V~sl~f  648 (695)
                       +.+.+..+... .....++|+    |+|+++++++. +++|.|||..+.+. +.++..          | ...|..+.+
T Consensus       228 ~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~-~~~i~~~~~~~~~~~~~p~~rva~i~~  305 (567)
T 1qks_A          228 KEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAILA  305 (567)
T ss_dssp             SSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred             CCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE-EEEEeccccccccccccCCCceEEEEE
Confidence             78888777653 346799999    69999877765 68999999988664 554431          2 226888999


Q ss_pred             ecCCCeEEEEEeCCCcEEEEECCCCeEE--EEEecCCCcEEEEEEeCCC
Q 005473          649 HPSKEDLLCSCDNNSEIRYWSINNGSCA--GVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       649 spdg~~llaSgs~Dg~IriWDl~tg~~v--~~~~~h~~~VtsVaf~sPd  695 (695)
                      +++++.++++...+|.|.++|+.+.+.+  ..+. .......+.| +|+
T Consensus       306 s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~-~pd  352 (567)
T 1qks_A          306 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGL-DGS  352 (567)
T ss_dssp             CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEE-CTT
T ss_pred             cCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceE-CCC
Confidence            9998888888888999999999875432  2232 2234456777 664

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.73  E-value=5.4e-07  Score=95.10  Aligned_cols=163  Identities=12%  Similarity=-0.023  Sum_probs=112.2

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      ++.++...++.|.+|+....                   +.+..+.. ......++++++++++++...++.|.+||..+
T Consensus        55 ~lyv~~~~~~~v~viD~~t~-------------------~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t  114 (328)
T 3dsm_A           55 IGWIVVNNSHVIFAIDINTF-------------------KEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT  114 (328)
T ss_dssp             EEEEEEGGGTEEEEEETTTC-------------------CEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTT
T ss_pred             EEEEEEcCCCEEEEEECccc-------------------EEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCC
Confidence            44455556677888855322                   22333332 34578999999985555544899999999999


Q ss_pred             CeEEEEecccC-----CCeEEEEEcCCCCEEEEEe--CCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEE
Q 005473          587 FTVKSTLEEHT-----QWITDVRFSPSLSRLATSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC  659 (695)
Q Consensus       587 ~~~~~~l~~H~-----~~V~~v~~spdg~~LaTgs--~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSg  659 (695)
                      ++.+..+....     .....+++  ++..|+.++  .+++|.+||+.+++. +..+.. ......+.++|+|+ +++++
T Consensus       115 ~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~-~~~i~~-g~~p~~i~~~~dG~-l~v~~  189 (328)
T 3dsm_A          115 YEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKV-VDELTI-GIQPTSLVMDKYNK-MWTIT  189 (328)
T ss_dssp             TEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEE-EEEEEC-SSCBCCCEECTTSE-EEEEB
T ss_pred             CeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeE-EEEEEc-CCCccceEEcCCCC-EEEEE
Confidence            99887765332     14557777  345555554  489999999998764 555543 23467889999987 55565


Q ss_pred             eCC----------CcEEEEECCCCeEEEEEecC-CCcEEEEEEeCCC
Q 005473          660 DNN----------SEIRYWSINNGSCAGVFKNF-FESFVSVRVVQPR  695 (695)
Q Consensus       660 s~D----------g~IriWDl~tg~~v~~~~~h-~~~VtsVaf~sPd  695 (695)
                      ..+          +.|.+||..+++.+..+... ......|+| +|+
T Consensus       190 ~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~-~~d  235 (328)
T 3dsm_A          190 DGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQL-NGT  235 (328)
T ss_dssp             CCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEE-CTT
T ss_pred             CCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEE-ecC
Confidence            544          78999999999988777643 235689999 885

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.73  E-value=6.2e-08  Score=112.90  Aligned_cols=136  Identities=13%  Similarity=0.059  Sum_probs=96.2

Q ss_pred             CCCCCeEEEEEcCCCCEEE-----EEeCCCcEEEEECCCCeEEEEecccCCCe--EEEEEcCCCCEEEEEeCCCe-----
Q 005473          553 ASTSKVESCHFSPDGKLLA-----TGGHDKKAVLWCTESFTVKSTLEEHTQWI--TDVRFSPSLSRLATSSADRT-----  620 (695)
Q Consensus       553 ~H~~~V~~v~fspdg~~La-----Sgs~Dg~V~IWDl~t~~~~~~l~~H~~~V--~~v~~spdg~~LaTgs~Dgt-----  620 (695)
                      +|...+.+++|||||++||     .|+.+..|+|||+.+++.+.  ..+...+  ..++|+|||+.|+.++.|..     
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~  195 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV  195 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence            4555689999999999988     44445789999999988641  1122222  68999999999999988876     


Q ss_pred             --------EEEEECCCCCe---eEEEEecCCCCeEEEEEecCCCeEEEEEeCC-C--cEEEEECCCCeEEEEEecCCCcE
Q 005473          621 --------VRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-S--EIRYWSINNGSCAGVFKNFFESF  686 (695)
Q Consensus       621 --------IrvWDl~t~~~---~l~~~~gh~~~V~sl~fspdg~~llaSgs~D-g--~IriWDl~tg~~v~~~~~h~~~V  686 (695)
                              |++|++.++..   ++.....|...+.++.|+|||+.+++++..+ +  .|++||..+++ ...+..+.+.+
T Consensus       196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~  274 (695)
T 2bkl_A          196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAK  274 (695)
T ss_dssp             GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCC
T ss_pred             ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCce
Confidence                    99999987652   2333444666899999999999777665543 2  67777765554 34444455555


Q ss_pred             EEEEE
Q 005473          687 VSVRV  691 (695)
Q Consensus       687 tsVaf  691 (695)
                      ....|
T Consensus       275 ~~~~~  279 (695)
T 2bkl_A          275 YEVHA  279 (695)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            55544

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.72  E-value=1.1e-06  Score=90.75  Aligned_cols=122  Identities=14%  Similarity=0.093  Sum_probs=96.9

Q ss_pred             CCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEec------ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005473          556 SKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLE------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs~-Dg~V~IWDl~t~~~~~~l~------~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t  628 (695)
                      ..+.++.+.++|++|++.+. ++.|..+|. +++.+..+.      .+...+..+++.+++.+|++...++.|.+||.. 
T Consensus        77 ~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-  154 (276)
T 3no2_A           77 CEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-  154 (276)
T ss_dssp             CEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             ccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-
Confidence            45889999999999999887 778888886 677776664      222345567889999999999999999999998 


Q ss_pred             CCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecC
Q 005473          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF  682 (695)
Q Consensus       629 ~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h  682 (695)
                      ++. +..+..+ ..+.++.+.++|. +++++..++.|..||..+|+.+..+..+
T Consensus       155 G~~-~w~~~~~-~~~~~~~~~~~g~-~~v~~~~~~~v~~~d~~tG~~~w~~~~~  205 (276)
T 3no2_A          155 GQL-LNSVKLS-GTPFSSAFLDNGD-CLVACGDAHCFVQLNLESNRIVRRVNAN  205 (276)
T ss_dssp             SCE-EEEEECS-SCCCEEEECTTSC-EEEECBTTSEEEEECTTTCCEEEEEEGG
T ss_pred             CCE-EEEEECC-CCccceeEcCCCC-EEEEeCCCCeEEEEeCcCCcEEEEecCC
Confidence            665 6777654 4567788889887 5667777889999999999999888743

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.72  E-value=4.4e-06  Score=84.63  Aligned_cols=137  Identities=7%  Similarity=0.006  Sum_probs=100.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-EecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 005473          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (695)
Q Consensus       554 H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~-~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~  632 (695)
                      ....+.++++.++|+++++...++.|.+||. +++... .+..+...+.++++.+++.++++...++.|.+||. ++...
T Consensus        97 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~  174 (299)
T 2z2n_A           97 PDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDIT  174 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred             cCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEE
Confidence            4456899999999998888777889999998 554433 23334567899999999988887777889999999 55542


Q ss_pred             EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEE-EecCCCcEEEEEEeCCC
Q 005473          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FKNFFESFVSVRVVQPR  695 (695)
Q Consensus       633 l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~-~~~h~~~VtsVaf~sPd  695 (695)
                      ......+...+.+++++++|. ++++...++.|.+||. +++.... +..+...+.+|++ +|+
T Consensus       175 ~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~-~~~  235 (299)
T 2z2n_A          175 EFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITA-GAG  235 (299)
T ss_dssp             EEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE-CST
T ss_pred             EeeCCCCCCcceeEEECCCCC-EEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEE-CCC
Confidence            222333456688999999987 6666666889999999 6654332 2334567888888 764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.71  E-value=1e-06  Score=91.20  Aligned_cols=136  Identities=11%  Similarity=0.102  Sum_probs=97.0

Q ss_pred             CeEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEE-EEEeCCCeEEEEEC
Q 005473          557 KVESCHFSPDGKLLATGGHD---------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDT  626 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~D---------g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~L-aTgs~DgtIrvWDl  626 (695)
                      .+.+++++++|+++++...+         ....||.+.....+..+..+......++|+|+++.| ++.+.++.|++||+
T Consensus        99 ~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~  178 (297)
T 3g4e_A           99 RFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDY  178 (297)
T ss_dssp             EEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEE
T ss_pred             CCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEec
Confidence            47899999999977655332         234566554322222333344567899999999876 45566789999997


Q ss_pred             C--CCCee----EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeC-C
Q 005473          627 E--NPDYS----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQ-P  694 (695)
Q Consensus       627 ~--t~~~~----l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~s-P  694 (695)
                      +  ++...    +..+..+.+.+..++++++|. ++++...++.|.+||..+|+.+..+..+...+++++| . |
T Consensus       179 d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f-~g~  251 (297)
T 3g4e_A          179 DLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCF-GGK  251 (297)
T ss_dssp             CTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEE-ESG
T ss_pred             cCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEE-eCC
Confidence            4  44321    222333446688999999986 7767777889999999999999999988888999999 6 5

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.67  E-value=3.2e-06  Score=96.68  Aligned_cols=158  Identities=11%  Similarity=0.054  Sum_probs=115.2

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEc----CCCCEEEEEeC-CCcEE
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS----PDGKLLATGGH-DKKAV  580 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fs----pdg~~LaSgs~-Dg~V~  580 (695)
                      .+++.+++.|+.|.+|+....              +.   +.+..+..... ...++|+    |||++++++.. ++.|.
T Consensus       208 Gr~lyv~~~dg~V~viD~~~~--------------t~---~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~  269 (567)
T 1qks_A          208 GRYLFVIGRDGKVNMIDLWMK--------------EP---TTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYV  269 (567)
T ss_dssp             SCEEEEEETTSEEEEEETTSS--------------SC---CEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCC--------------CC---cEeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCeEE
Confidence            367777888889999965211              11   23334444333 5789999    69998888776 59999


Q ss_pred             EEECCCCeEEEEecc----------cCC-CeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEE
Q 005473          581 LWCTESFTVKSTLEE----------HTQ-WITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF  648 (695)
Q Consensus       581 IWDl~t~~~~~~l~~----------H~~-~V~~v~~spdg~~L-aTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~f  648 (695)
                      |+|..+.+.+.++..          |.. .|..+.+++++..+ +....+|.|.++|+...+...............+.|
T Consensus       270 ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~  349 (567)
T 1qks_A          270 IMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGL  349 (567)
T ss_dssp             EEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEE
T ss_pred             EEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceE
Confidence            999999998877642          222 57888888876654 555667999999998755322222234456778999


Q ss_pred             ecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec
Q 005473          649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKN  681 (695)
Q Consensus       649 spdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~  681 (695)
                      +|+|+++++++..++.|.+||+.+++.+..+..
T Consensus       350 ~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~v  382 (567)
T 1qks_A          350 DGSHRYFITAANARNKLVVIDTKEGKLVAIEDT  382 (567)
T ss_dssp             CTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             CCCCCEEEEEeCCCCeEEEEECCCCcEEEEEec
Confidence            999999888888889999999999998877765

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.63  E-value=7.2e-07  Score=104.74  Aligned_cols=132  Identities=11%  Similarity=0.046  Sum_probs=91.4

Q ss_pred             eEEEEEcCCCCEEEEEeCCCc--------------EEEEECCCCeE--EEEec--ccCCCeEEEEEcCCCCEEEEEeCCC
Q 005473          558 VESCHFSPDGKLLATGGHDKK--------------AVLWCTESFTV--KSTLE--EHTQWITDVRFSPSLSRLATSSADR  619 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~Dg~--------------V~IWDl~t~~~--~~~l~--~H~~~V~~v~~spdg~~LaTgs~Dg  619 (695)
                      +..++|+|| +.|+.++.|+.              |++|++.++..  ...+.  .|...+..+.|+|||++|+..+.++
T Consensus       211 ~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~  289 (741)
T 1yr2_A          211 FSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEG  289 (741)
T ss_dssp             SCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECT
T ss_pred             eccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEcc
Confidence            357899999 98888887654              89999977652  23333  3344688999999999888776543


Q ss_pred             -----eEEEEECCCCCee-EEEEecCCCCeEEEEEecCCCeEEEEEeC---CCcEEEEECCCC--eEEEEEecCCCcEEE
Q 005473          620 -----TVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDN---NSEIRYWSINNG--SCAGVFKNFFESFVS  688 (695)
Q Consensus       620 -----tIrvWDl~t~~~~-l~~~~gh~~~V~sl~fspdg~~llaSgs~---Dg~IriWDl~tg--~~v~~~~~h~~~Vts  688 (695)
                           .|++||+.++... ...+..+...+.... .|+|..|++....   ++.|.+||+.++  .....+..+...+..
T Consensus       290 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~  368 (741)
T 1yr2_A          290 TDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLES  368 (741)
T ss_dssp             TCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEE
T ss_pred             CCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEE
Confidence                 8999999876222 455555655565554 4888877766543   456999999874  444555555555666


Q ss_pred             EEE
Q 005473          689 VRV  691 (695)
Q Consensus       689 Vaf  691 (695)
                      ++|
T Consensus       369 ~~~  371 (741)
T 1yr2_A          369 VGI  371 (741)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            665

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.59  E-value=2.5e-06  Score=87.56  Aligned_cols=136  Identities=15%  Similarity=0.225  Sum_probs=99.7

Q ss_pred             CCeEEEEEcCCCCEEEEEeCC---------------CcEEEEECCCCeEEEEecccCCCeEEEEEc----CCCCEEEEE-
Q 005473          556 SKVESCHFSPDGKLLATGGHD---------------KKAVLWCTESFTVKSTLEEHTQWITDVRFS----PSLSRLATS-  615 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs~D---------------g~V~IWDl~t~~~~~~l~~H~~~V~~v~~s----pdg~~LaTg-  615 (695)
                      ..+.+++++++|+++++...+               +.|..||.. ++.... ..+......++|+    |+++.|+.+ 
T Consensus       117 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~  194 (314)
T 1pjx_A          117 QGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV-DTAFQFPNGIAVRHMNDGRPYQLIVAE  194 (314)
T ss_dssp             BCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE-EEEESSEEEEEEEECTTSCEEEEEEEE
T ss_pred             cCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe-ccCCCCcceEEEecccCCCCCEEEEEE
Confidence            347899999999988777655               567777765 554433 3344567889999    998665544 


Q ss_pred             eCCCeEEEEECC-CCCe----eEEEEecCC-CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEE
Q 005473          616 SADRTVRVWDTE-NPDY----SLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSV  689 (695)
Q Consensus       616 s~DgtIrvWDl~-t~~~----~l~~~~gh~-~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsV  689 (695)
                      ..++.|++||++ ++..    .+..+.++. ..+..++++++|. ++++...++.|.+||..+++.+..+..+...+.++
T Consensus       195 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i  273 (314)
T 1pjx_A          195 TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNL  273 (314)
T ss_dssp             TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEE
T ss_pred             CCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC-EEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeE
Confidence            568899999986 3321    123333443 5688999999986 66676678899999998888888888777889999


Q ss_pred             EEeCCC
Q 005473          690 RVVQPR  695 (695)
Q Consensus       690 af~sPd  695 (695)
                      +| +|+
T Consensus       274 ~~-~~d  278 (314)
T 1pjx_A          274 HF-KPQ  278 (314)
T ss_dssp             EE-CTT
T ss_pred             EE-CCC
Confidence            99 875

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.57  E-value=7.8e-06  Score=84.57  Aligned_cols=163  Identities=10%  Similarity=0.030  Sum_probs=102.5

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      .++.+...++.|..|+...+.                    +..+ .....+.+++|+++|+++++ . +..|.+||.++
T Consensus        26 ~l~~~d~~~~~i~~~d~~~~~--------------------~~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~   82 (297)
T 3g4e_A           26 SLLFVDIPAKKVCRWDSFTKQ--------------------VQRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKE   82 (297)
T ss_dssp             EEEEEETTTTEEEEEETTTCC--------------------EEEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTT
T ss_pred             EEEEEECCCCEEEEEECCCCc--------------------EEEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCC
Confidence            556666677788888543221                    0111 12356899999999996554 4 56799999988


Q ss_pred             CeEEEEecc----cCCCeEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCC
Q 005473          587 FTVKSTLEE----HTQWITDVRFSPSLSRLATSSAD---------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE  653 (695)
Q Consensus       587 ~~~~~~l~~----H~~~V~~v~~spdg~~LaTgs~D---------gtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~  653 (695)
                      ++.......    ....+.+++++|+|+++++...+         ....||.+..... +..+..+......++|+|+++
T Consensus        83 g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~~~~pngi~~spdg~  161 (297)
T 3g4e_A           83 QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFDQVDISNGLDWSLDHK  161 (297)
T ss_dssp             TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEEEESBEEEEEECTTSC
T ss_pred             CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEeeccccccceEEcCCCC
Confidence            775433322    12458899999999977765321         2334555443232 233333345678999999999


Q ss_pred             eEEEEEeCCCcEEEEEC--CCCeE-----EEEEecCCCcEEEEEEeCC
Q 005473          654 DLLCSCDNNSEIRYWSI--NNGSC-----AGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       654 ~llaSgs~Dg~IriWDl--~tg~~-----v~~~~~h~~~VtsVaf~sP  694 (695)
                      .++++.+.++.|.+||+  .+|..     +..+..+.+.+..|++ ++
T Consensus       162 ~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~-d~  208 (297)
T 3g4e_A          162 IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCI-DA  208 (297)
T ss_dssp             EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEE-BT
T ss_pred             EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEE-CC
Confidence            88888888899999997  45543     2222233345566666 54

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.56  E-value=4.3e-06  Score=85.80  Aligned_cols=136  Identities=10%  Similarity=0.067  Sum_probs=91.9

Q ss_pred             CCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEE-ecc----cCCCeEEEEEcCCCCEEEEEeCC---------
Q 005473          554 STSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKST-LEE----HTQWITDVRFSPSLSRLATSSAD---------  618 (695)
Q Consensus       554 H~~~V~~v~fspd-g~~LaSgs~Dg~V~IWDl~t~~~~~~-l~~----H~~~V~~v~~spdg~~LaTgs~D---------  618 (695)
                      +...+.+++++++ |+++++.. +..|.+||.. ++.... ...    +...+.+++++++++++++...+         
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~  146 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR  146 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred             CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence            4456899999999 76555444 4579999998 665433 221    12458899999999888877655         


Q ss_pred             ------CeEEEEECCCCCeeEEEEecCCCCeEEEEEe----cCCCeEEEEEeCCCcEEEEECC-CCe-----EEEEEecC
Q 005473          619 ------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFH----PSKEDLLCSCDNNSEIRYWSIN-NGS-----CAGVFKNF  682 (695)
Q Consensus       619 ------gtIrvWDl~t~~~~l~~~~gh~~~V~sl~fs----pdg~~llaSgs~Dg~IriWDl~-tg~-----~v~~~~~h  682 (695)
                            +.|..||.. +..  ..+..+......++|+    |+++.++++...++.|++||+. +++     ....+.++
T Consensus       147 ~~~~~~~~l~~~~~~-g~~--~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~  223 (314)
T 1pjx_A          147 SMQEKFGSIYCFTTD-GQM--IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT  223 (314)
T ss_dssp             TTSSSCEEEEEECTT-SCE--EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred             cccCCCCeEEEECCC-CCE--EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCC
Confidence                  567777776 332  2233334567889999    9987777777778999999986 454     22333344


Q ss_pred             C-CcEEEEEEeCCC
Q 005473          683 F-ESFVSVRVVQPR  695 (695)
Q Consensus       683 ~-~~VtsVaf~sPd  695 (695)
                      . ..+..|++ +|+
T Consensus       224 ~~~~p~~i~~-d~~  236 (314)
T 1pjx_A          224 HEGGADGMDF-DED  236 (314)
T ss_dssp             SSCEEEEEEE-BTT
T ss_pred             CCCCCCceEE-CCC
Confidence            3 45677777 653

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.56  E-value=2.7e-05  Score=78.72  Aligned_cols=137  Identities=9%  Similarity=-0.020  Sum_probs=99.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-EecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 005473          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (695)
Q Consensus       554 H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~-~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~  632 (695)
                      +...+.++++.++|+++++...++.|.+||.. ++... .+......+.++++.+++.++++...++.|..||.. +...
T Consensus        60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~  137 (300)
T 2qc5_A           60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY  137 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE
T ss_pred             CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE
Confidence            34568999999999988777768899999988 55432 223344678999999999888887778899999988 5542


Q ss_pred             EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEE-EecCCCcEEEEEEeCCC
Q 005473          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FKNFFESFVSVRVVQPR  695 (695)
Q Consensus       633 l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~-~~~h~~~VtsVaf~sPd  695 (695)
                      ...+......+.++++.+++. ++++...++.|.+||. +++.... ...+...+..|++ +|+
T Consensus       138 ~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~-d~~  198 (300)
T 2qc5_A          138 EYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITS-GND  198 (300)
T ss_dssp             EEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE-CTT
T ss_pred             EccCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEE-CCC
Confidence            223333456789999999988 6667666789999998 5554432 2234456778887 663

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.54  E-value=2.9e-05  Score=78.57  Aligned_cols=137  Identities=7%  Similarity=-0.020  Sum_probs=98.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-EecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 005473          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (695)
Q Consensus       554 H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~-~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~  632 (695)
                      ....+.++++.++|+++++...++.|.+||.. ++... .+......+.++++.++++++++...++.|.+||. ++...
T Consensus       102 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~  179 (300)
T 2qc5_A          102 PDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLE  179 (300)
T ss_dssp             TTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE
T ss_pred             CCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEE
Confidence            34568999999999988877778899999987 55442 23334567899999999987777766889999998 44442


Q ss_pred             EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEE-EecCCCcEEEEEEeCCC
Q 005473          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FKNFFESFVSVRVVQPR  695 (695)
Q Consensus       633 l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~-~~~h~~~VtsVaf~sPd  695 (695)
                      ......+...+.+++++++|. ++++...++.|.+||. +++.... +..+...+.+|++ +|+
T Consensus       180 ~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~-d~~  240 (300)
T 2qc5_A          180 EYPLPTNAAAPVGITSGNDGA-LWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITA-GKN  240 (300)
T ss_dssp             EEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE-CST
T ss_pred             EeeCCCCCCCcceEEECCCCC-EEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEE-CCC
Confidence            222233456789999999986 6666666778999998 5554433 3344566788888 764

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.53  E-value=1.4e-05  Score=84.05  Aligned_cols=133  Identities=9%  Similarity=-0.009  Sum_probs=94.0

Q ss_pred             CeEEEEEcCCCCEEEEEeC------CCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECC--
Q 005473          557 KVESCHFSPDGKLLATGGH------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTE--  627 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~------Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTg-s~DgtIrvWDl~--  627 (695)
                      .+.+++++++|+++++...      .+.|..+|  +++... +..+......++|+|+++.|+.+ +.++.|++||++  
T Consensus       135 ~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~  211 (326)
T 2ghs_A          135 RSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDAR  211 (326)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTT
T ss_pred             CCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccc
Confidence            5889999999997766542      24455555  455433 33344567899999999876554 557899999986  


Q ss_pred             CC-Ce----eEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeC-CC
Q 005473          628 NP-DY----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQ-PR  695 (695)
Q Consensus       628 t~-~~----~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~s-Pd  695 (695)
                      ++ ..    .+..+......+..++++++|. ++++...++.|.+||. +++.+..+..+...+++++| . |+
T Consensus       212 ~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af-~g~d  282 (326)
T 2ghs_A          212 TGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAF-IGPD  282 (326)
T ss_dssp             TCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEE-ESTT
T ss_pred             cCCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEE-ecCC
Confidence            44 21    1223333445678899999987 6656656788999998 67888888888778999999 6 54

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.51  E-value=1.4e-05  Score=84.11  Aligned_cols=132  Identities=11%  Similarity=-0.012  Sum_probs=87.6

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc---c-CCCeEEEEEcCCCCEEEEEeC------CCeEEEEE
Q 005473          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE---H-TQWITDVRFSPSLSRLATSSA------DRTVRVWD  625 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~---H-~~~V~~v~~spdg~~LaTgs~------DgtIrvWD  625 (695)
                      ..|.+++|+++|+++++. .+ .|.+||..+++.......   . ...+.+++++|+|+++++...      .+.|+.+|
T Consensus        90 ~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~  167 (326)
T 2ghs_A           90 FMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA  167 (326)
T ss_dssp             SCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred             CcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe
Confidence            468999999999877764 44 499999988776433321   1 246889999999987766542      24566666


Q ss_pred             CCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC--CC-e-----EEEEEecCCCcEEEEEEeCC
Q 005473          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--NG-S-----CAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       626 l~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~--tg-~-----~v~~~~~h~~~VtsVaf~sP  694 (695)
                        ++.  +..+..+......++|+|+++.++++.+.++.|.+||+.  ++ +     .+..+......+..+++ ++
T Consensus       168 --~g~--~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~-d~  239 (326)
T 2ghs_A          168 --KGK--VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVC-DA  239 (326)
T ss_dssp             --TTE--EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEE-CT
T ss_pred             --CCc--EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEE-CC
Confidence              333  333333334678999999998777777778999999986  56 3     22223223344456665 44

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.50  E-value=9.7e-06  Score=95.07  Aligned_cols=140  Identities=12%  Similarity=0.052  Sum_probs=97.9

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCC--eEEEEecccCCCeEEEEEcCCCCEEEEEeC----CCe
Q 005473          552 PASTSKVESCHFSPDGKLLATGGHDK-----KAVLWCTESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSA----DRT  620 (695)
Q Consensus       552 ~~H~~~V~~v~fspdg~~LaSgs~Dg-----~V~IWDl~t~--~~~~~l~~H~~~V~~v~~spdg~~LaTgs~----Dgt  620 (695)
                      ..+...+..+.|+|||++|+..+.++     .|++||+.++  ++...+..+...+.... +|++..|+..+.    ++.
T Consensus       264 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~  342 (741)
T 1yr2_A          264 PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKK  342 (741)
T ss_dssp             TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCE
T ss_pred             CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCE
Confidence            34444689999999999888877554     8999999877  31455655555555554 488888877765    345


Q ss_pred             EEEEECCCC-CeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC-CCeEEEEEec-CCCcEEEEEEeCCC
Q 005473          621 VRVWDTENP-DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKN-FFESFVSVRVVQPR  695 (695)
Q Consensus       621 IrvWDl~t~-~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~-tg~~v~~~~~-h~~~VtsVaf~sPd  695 (695)
                      |.+||+.++ ......+..+...+.+++|.  +..++++...|+..+||.+. ++..+..+.. +.+.|..+.| +|+
T Consensus       343 l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~-s~d  417 (741)
T 1yr2_A          343 IVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSG-RPG  417 (741)
T ss_dssp             EEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEEC-CBT
T ss_pred             EEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeec-CCC
Confidence            999999875 23234444455556677777  45688899999988887665 4667777764 3567778887 764

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.48  E-value=9.1e-06  Score=88.85  Aligned_cols=132  Identities=11%  Similarity=0.060  Sum_probs=92.4

Q ss_pred             EEEcCCCCEEEEEeCCC--cEEEEECCCCeEEEEe----cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 005473          561 CHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTL----EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (695)
Q Consensus       561 v~fspdg~~LaSgs~Dg--~V~IWDl~t~~~~~~l----~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~  634 (695)
                      ++|++++++|+++..++  .|.+||..++.....+    ..+...+.+++++|++..|+.+..++.|+.||..++...+.
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~  255 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI  255 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence            99999999999998866  7888888765544444    22456788999999655666677788999999987653221


Q ss_pred             E---EecCCCCe-E-EEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCC---------------CcEEEEEEeCC
Q 005473          635 T---FTGHSTTV-M-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFF---------------ESFVSVRVVQP  694 (695)
Q Consensus       635 ~---~~gh~~~V-~-sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~---------------~~VtsVaf~sP  694 (695)
                      .   ..++.... . .++|+|++..++++...++.|+.||....  +..+.++.               .....|+| +|
T Consensus       256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~-d~  332 (409)
T 3hrp_A          256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTV-DE  332 (409)
T ss_dssp             EECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEE-CT
T ss_pred             ecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEE-eC
Confidence            1   22232333 3 99999976778888888899999997643  33333332               34678888 76


Q ss_pred             C
Q 005473          695 R  695 (695)
Q Consensus       695 d  695 (695)
                      +
T Consensus       333 d  333 (409)
T 3hrp_A          333 D  333 (409)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.48  E-value=2.1e-06  Score=100.17  Aligned_cols=127  Identities=11%  Similarity=0.009  Sum_probs=91.1

Q ss_pred             EEEEEcCCCCEEEEEeCCCc-------------EEEEECCCCeE--EEEe--cc-cCCCeEEEEEcCCCCEEEEEeC---
Q 005473          559 ESCHFSPDGKLLATGGHDKK-------------AVLWCTESFTV--KSTL--EE-HTQWITDVRFSPSLSRLATSSA---  617 (695)
Q Consensus       559 ~~v~fspdg~~LaSgs~Dg~-------------V~IWDl~t~~~--~~~l--~~-H~~~V~~v~~spdg~~LaTgs~---  617 (695)
                      ..++|+ ||+.|+.++.|..             |++|++.+...  +..+  .. |...+..+.|+||+++|+....   
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~  256 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST  256 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence            467899 9999998888754             99999977542  2333  33 5556889999999998755432   


Q ss_pred             -CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC---CcEEEEECCCCeE--EEEEecCCCcEE
Q 005473          618 -DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGSC--AGVFKNFFESFV  687 (695)
Q Consensus       618 -DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D---g~IriWDl~tg~~--v~~~~~h~~~Vt  687 (695)
                       +..|++||+.++......+..+...+... |+++|..+++....+   +.|.+||+.++.+  ...+..|...+.
T Consensus       257 ~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~  331 (693)
T 3iuj_A          257 SGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL  331 (693)
T ss_dssp             SCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE
T ss_pred             CCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE
Confidence             35899999987754456677777766665 677778788777654   6899999988755  345666655544

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.44  E-value=1.5e-05  Score=87.22  Aligned_cols=136  Identities=9%  Similarity=0.007  Sum_probs=95.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE----ecccCCCe-E-EEEEcCC-CCEEEEEeCCCeEEEEEC
Q 005473          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST----LEEHTQWI-T-DVRFSPS-LSRLATSSADRTVRVWDT  626 (695)
Q Consensus       554 H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~----l~~H~~~V-~-~v~~spd-g~~LaTgs~DgtIrvWDl  626 (695)
                      +...+.+++++|++..|+.+..++.|+.||..++.....    ..++.... . .++|+|+ +.++++-..++.|+.||.
T Consensus       217 ~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~  296 (409)
T 3hrp_A          217 FSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITP  296 (409)
T ss_dssp             SCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred             hcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEec
Confidence            445678999999555566677789999999987764332    22232222 3 9999995 555566667889999998


Q ss_pred             CCCCeeEEEEecCC---------------CCeEEEEEecCCCeEEEEEe-CCCcEEEEECCCCeEEEEEecC--------
Q 005473          627 ENPDYSLRTFTGHS---------------TTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFKNF--------  682 (695)
Q Consensus       627 ~t~~~~l~~~~gh~---------------~~V~sl~fspdg~~llaSgs-~Dg~IriWDl~tg~~v~~~~~h--------  682 (695)
                      +..   +..+.++.               .....++|+++|. ++++-. .++.|+.||+.++.. .++.++        
T Consensus       297 ~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~  371 (409)
T 3hrp_A          297 DGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQID  371 (409)
T ss_dssp             TCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCC
T ss_pred             CCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCC
Confidence            753   34444432               3478999999998 777777 889999999887764 444443        


Q ss_pred             -------CCcEEEEEEeCCC
Q 005473          683 -------FESFVSVRVVQPR  695 (695)
Q Consensus       683 -------~~~VtsVaf~sPd  695 (695)
                             -.....|++ +|+
T Consensus       372 g~~~~~~~~~P~giav-d~~  390 (409)
T 3hrp_A          372 GTPLEATFNYPYDICY-DGE  390 (409)
T ss_dssp             BSTTTCCBSSEEEEEE-CSS
T ss_pred             CChhceEeCCceEEEE-cCC
Confidence                   234678888 764

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.44  E-value=7.7e-07  Score=103.86  Aligned_cols=134  Identities=16%  Similarity=0.073  Sum_probs=93.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe-----CCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCe-------
Q 005473          553 ASTSKVESCHFSPDGKLLATGG-----HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT-------  620 (695)
Q Consensus       553 ~H~~~V~~v~fspdg~~LaSgs-----~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~Dgt-------  620 (695)
                      +|...|..++|||||++||-+.     .+..|+|||+.+++.+.... +......++|+ |++.|+.++.|..       
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            3555688999999999887432     33679999999998654311 11113578899 9999988887743       


Q ss_pred             ------EEEEECCCCCe---eEEEEec-CCCCeEEEEEecCCCeEEEEEeCC---CcEEEEECCCCe-EEEEEecCCCcE
Q 005473          621 ------VRVWDTENPDY---SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGS-CAGVFKNFFESF  686 (695)
Q Consensus       621 ------IrvWDl~t~~~---~l~~~~g-h~~~V~sl~fspdg~~llaSgs~D---g~IriWDl~tg~-~v~~~~~h~~~V  686 (695)
                            |++|++.++..   ++..... |...+.++.|+|||+.++++.+.+   ..|++||+.++. +...+..+.+.+
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~  283 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD  283 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence                  99999987542   3333334 556688999999999887776533   589999998763 455555555544


Q ss_pred             EE
Q 005473          687 VS  688 (695)
Q Consensus       687 ts  688 (695)
                      ..
T Consensus       284 ~~  285 (693)
T 3iuj_A          284 VS  285 (693)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.33  E-value=5.1e-08  Score=105.14  Aligned_cols=147  Identities=11%  Similarity=-0.002  Sum_probs=77.6

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~  585 (695)
                      +..+++++.|+.|..|+..++.                   .+-.+..  +.+.+..+..+++++++++.|+.|+.||..
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~-------------------~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~   67 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGS-------------------IKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSK   67 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCC-------------------EEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC---
T ss_pred             CCEEEEEcCCCEEEEEECCCCC-------------------EEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECC
Confidence            4778899999999999765442                   1111112  234455555678788888899999999999


Q ss_pred             CCeEEEEecccCC-CeE-EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC
Q 005473          586 SFTVKSTLEEHTQ-WIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (695)
Q Consensus       586 t~~~~~~l~~H~~-~V~-~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg  663 (695)
                      +++.+..+..+.. .+. +..+. .+..|++++.|+.|+.||.++++. +..+..+.    .+.++|++. .+++++.|+
T Consensus        68 tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~-~w~~~~~~----~~~~~p~~~-~v~~~~~dg  140 (369)
T 2hz6_A           68 NNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEK-QQTLSSAF----ADSLSPSTS-LLYLGRTEY  140 (369)
T ss_dssp             --CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEEE
T ss_pred             CCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcE-EEEecCCC----cccccccCC-EEEEEecCC
Confidence            9988777654421 111 01111 345788888899999999999875 55555443    234566666 555778899


Q ss_pred             cEEEEECCCCeEEEEEe
Q 005473          664 EIRYWSINNGSCAGVFK  680 (695)
Q Consensus       664 ~IriWDl~tg~~v~~~~  680 (695)
                      .|+.||.++|+.+..+.
T Consensus       141 ~v~a~d~~tG~~~W~~~  157 (369)
T 2hz6_A          141 TITMYDTKTRELRWNAT  157 (369)
T ss_dssp             EEECCCSSSSSCCCEEE
T ss_pred             EEEEEECCCCCEEEeEe
Confidence            99999999998765543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.33  E-value=2.8e-05  Score=83.94  Aligned_cols=120  Identities=9%  Similarity=0.019  Sum_probs=88.7

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccc-------CCCeEEEEEcCCCC
Q 005473          548 FQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSLS  610 (695)
Q Consensus       548 v~~l~~H~~~V~~v~fspdg~~LaSgs----------~Dg~V~IWDl~t~~~~~~l~~H-------~~~V~~v~~spdg~  610 (695)
                      +..+.....+  .++|+|||++|+++.          .++.|.+||..+.+.+..+...       ......+.|+|||+
T Consensus        60 ~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~  137 (373)
T 2mad_H           60 LGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA  137 (373)
T ss_pred             EEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCC
Confidence            3444443443  899999999999886          3678999999998887766421       12355899999999


Q ss_pred             EEEEEeC--CCeEEEEECCCCCeeEEE-EecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEE
Q 005473          611 RLATSSA--DRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA  676 (695)
Q Consensus       611 ~LaTgs~--DgtIrvWDl~t~~~~l~~-~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v  676 (695)
                      +|++++.  +..|.++| .+++. +.. +.. .   .|+.+.|+++..+++.+.||.+.+||. +++.+
T Consensus       138 ~l~v~n~~~~~~v~viD-~t~~~-~~~~i~~-~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~  199 (373)
T 2mad_H          138 DLLFFQFAAGPAVGLVV-QGGSS-DDQLLSS-P---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAA  199 (373)
T ss_pred             EEEEEecCCCCeEEEEE-CCCCE-EeEEcCC-C---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEE
Confidence            9998874  57899999 87664 555 432 1   235667887777778888999999999 77665

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.31  E-value=3.3e-05  Score=80.07  Aligned_cols=143  Identities=11%  Similarity=0.080  Sum_probs=94.6

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      .++.++..++.|..|.. ++                    .+..+..+...+.+++|+++|+++++...++.|.+||.+ 
T Consensus        58 ~l~~~d~~~~~i~~~~~-~g--------------------~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-  115 (305)
T 3dr2_A           58 TLVWSDLVGRRVLGWRE-DG--------------------TVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-  115 (305)
T ss_dssp             EEEEEETTTTEEEEEET-TS--------------------CEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             EEEEEECCCCEEEEEeC-CC--------------------CEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-
Confidence            46667777778877743 11                    012223345568999999999977666666889999986 


Q ss_pred             CeEEEEeccc----CCCeEEEEEcCCCCEEEE----EeC-------------CCeEEEEECCCCCeeEEEEecCCCCeEE
Q 005473          587 FTVKSTLEEH----TQWITDVRFSPSLSRLAT----SSA-------------DRTVRVWDTENPDYSLRTFTGHSTTVMS  645 (695)
Q Consensus       587 ~~~~~~l~~H----~~~V~~v~~spdg~~LaT----gs~-------------DgtIrvWDl~t~~~~l~~~~gh~~~V~s  645 (695)
                      ++........    ...+.++++.|+|++++|    |..             .+.|+.||..+++...  +. .......
T Consensus       116 g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~--~~-~~~~p~g  192 (305)
T 3dr2_A          116 GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR--MA-DLDHPNG  192 (305)
T ss_dssp             SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE--EE-EESSEEE
T ss_pred             CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE--Ee-cCCCCcc
Confidence            5533222111    234678999999998887    332             2568888886655422  22 3346788


Q ss_pred             EEEecCCCeEEEEEeC-----CCcEEEEECCCCe
Q 005473          646 LDFHPSKEDLLCSCDN-----NSEIRYWSINNGS  674 (695)
Q Consensus       646 l~fspdg~~llaSgs~-----Dg~IriWDl~tg~  674 (695)
                      ++|+||+..++++...     ++.|++||+..+.
T Consensus       193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~  226 (305)
T 3dr2_A          193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA  226 (305)
T ss_dssp             EEECTTSSEEEEEECCC---CCCEEEEEEEETTE
T ss_pred             eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC
Confidence            9999999866655543     2789999987654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.30  E-value=1.3e-05  Score=84.88  Aligned_cols=124  Identities=12%  Similarity=0.068  Sum_probs=88.6

Q ss_pred             CCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeEEEEe-------cccCCCeEEEEEcCCCCEEEEEeC-----CCeE
Q 005473          556 SKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPSLSRLATSSA-----DRTV  621 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs--~Dg~V~IWDl~t~~~~~~l-------~~H~~~V~~v~~spdg~~LaTgs~-----DgtI  621 (695)
                      ..+..|+++++|+++++..  .++.++||.+.+++.. .+       .+|-..+..|+++++++++++-..     ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            5689999999999988864  2343556655455432 22       234568999999999876665543     5789


Q ss_pred             EEEECCCCCeeEEEEec------CCCCeEEEEEecCCCeEEEEEe---CCCcEEEEECCCCeEEEEEec
Q 005473          622 RVWDTENPDYSLRTFTG------HSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNGSCAGVFKN  681 (695)
Q Consensus       622 rvWDl~t~~~~l~~~~g------h~~~V~sl~fspdg~~llaSgs---~Dg~IriWDl~tg~~v~~~~~  681 (695)
                      .+||+.+++. +..+..      +...+..+++++++..++++..   .++.|.+||+.+++..+.+.+
T Consensus        96 ~~~d~~tg~~-~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~  163 (343)
T 2qe8_A           96 VAWDTLNNQL-SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQG  163 (343)
T ss_dssp             EEEETTTTEE-EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTT
T ss_pred             EEEECCCCeE-EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecC
Confidence            9999998663 444432      2245689999987666777766   688999999998887776644

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.23  E-value=1e-05  Score=88.01  Aligned_cols=118  Identities=12%  Similarity=-0.005  Sum_probs=93.2

Q ss_pred             EEEcCCCCEEEEEeC-----CCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEE
Q 005473          561 CHFSPDGKLLATGGH-----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWD  625 (695)
Q Consensus       561 v~fspdg~~LaSgs~-----Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs----------~DgtIrvWD  625 (695)
                      ....|+++.++++..     ++.|.+.|..+++.+.++..-..+ . +.++||+++|++++          .++.|.+||
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            455789998888876     679999999999999888654454 4 99999999887765          367899999


Q ss_pred             CCCCCeeEEEEecC-------CCCeEEEEEecCCCeEEEEEe-CCCcEEEEECCCCeEEEEEec
Q 005473          626 TENPDYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFKN  681 (695)
Q Consensus       626 l~t~~~~l~~~~gh-------~~~V~sl~fspdg~~llaSgs-~Dg~IriWDl~tg~~v~~~~~  681 (695)
                      +.+.+. +.++.-.       ......+.|+|||++++++.. .++.|.++|+.+++.+.++..
T Consensus       116 ~~t~~v-~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v  178 (386)
T 3sjl_D          116 PVTLLP-TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV  178 (386)
T ss_dssp             TTTCCE-EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred             CCCCeE-EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC
Confidence            999775 5555321       124567999999998887764 378999999999999888863

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.22  E-value=3.6e-07  Score=98.50  Aligned_cols=113  Identities=13%  Similarity=0.025  Sum_probs=62.9

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEE
Q 005473          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL  646 (695)
Q Consensus       567 g~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl  646 (695)
                      +..|++|+.|+.|+.||.++++.+..+..+.    .+.++|++..|++++.|+.|+.||.++++. +..+..+.  ....
T Consensus        92 ~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~-~W~~~~~~--~~~~  164 (369)
T 2hz6_A           92 DGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTREL-RWNATYFD--YAAS  164 (369)
T ss_dssp             ---CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSC-CCEEEEEE--ECCB
T ss_pred             CCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCE-EEeEeccc--ccCc
Confidence            4467788889999999999999988876554    245567888999999999999999998774 33332111  1223


Q ss_pred             EEecCC---CeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEE
Q 005473          647 DFHPSK---EDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVS  688 (695)
Q Consensus       647 ~fspdg---~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~Vts  688 (695)
                      .+..+.   . .++.++.||.|+.||.++|+.+..+... .+|..
T Consensus       165 ~~~~~~~~~~-~v~~~~~dg~v~a~d~~tG~~~W~~~~~-~pv~~  207 (369)
T 2hz6_A          165 LPEDDVDYKM-SHFVSNGDGLVVTVDSESGDVLWIQNYA-SPVVA  207 (369)
T ss_dssp             CCCCCTTCCC-CEEEEETSCEEEEECTTTCCEEEEEECS-SCEEE
T ss_pred             cccCCccccc-eEEEECCCCEEEEEECCCCcEEEEecCC-CceEE
Confidence            333321   3 3446788999999999999998877643 34443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.20  E-value=8.5e-05  Score=78.52  Aligned_cols=138  Identities=7%  Similarity=-0.060  Sum_probs=92.8

Q ss_pred             CCeEEEEEcCCCCEE-EEEe---CCCcEEEEECCCCeEEEEecccC-----------------------------CCeEE
Q 005473          556 SKVESCHFSPDGKLL-ATGG---HDKKAVLWCTESFTVKSTLEEHT-----------------------------QWITD  602 (695)
Q Consensus       556 ~~V~~v~fspdg~~L-aSgs---~Dg~V~IWDl~t~~~~~~l~~H~-----------------------------~~V~~  602 (695)
                      ..+..+++++++..+ ++..   .++.|.+||+.+++..+.+.+|.                             ..+..
T Consensus       120 ~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~g  199 (343)
T 2qe8_A          120 SFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNG  199 (343)
T ss_dssp             CCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEE
T ss_pred             cccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccce
Confidence            456899999865554 4444   57899999999888777665431                             13578


Q ss_pred             EEEcCCCCEEEEEeCCC-eEEEEECC---CCCe----eE--EEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473          603 VRFSPSLSRLATSSADR-TVRVWDTE---NPDY----SL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (695)
Q Consensus       603 v~~spdg~~LaTgs~Dg-tIrvWDl~---t~~~----~l--~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t  672 (695)
                      |+|+|+++.|+++..++ .|+.+|..   .+..    ..  ....++.+....++++++|. ++++...++.|.+||..+
T Consensus       200 ia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~-l~va~~~~~~V~~~d~~~  278 (343)
T 2qe8_A          200 IVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHN-IYVGDLAHSAIGVITSAD  278 (343)
T ss_dssp             EEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCC-EEEEEGGGTEEEEEETTT
T ss_pred             eEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCC-EEEEccCCCeEEEEECCC
Confidence            99999999888887665 55555532   1110    00  01223445667799999986 777888899999999856


Q ss_pred             CeEEEEEec-CCCcEEEEEEeCCC
Q 005473          673 GSCAGVFKN-FFESFVSVRVVQPR  695 (695)
Q Consensus       673 g~~v~~~~~-h~~~VtsVaf~sPd  695 (695)
                      ++....... +...+++|+| .|+
T Consensus       279 G~~~~~~~~~~~~~p~~va~-~~~  301 (343)
T 2qe8_A          279 RAYKLLVTDEKLSWTDSFNF-GSD  301 (343)
T ss_dssp             TEEEEEEECGGGSCEEEEEE-CTT
T ss_pred             CCEEEEEECCceecCCeeEE-CCC
Confidence            764433332 2456788998 764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.18  E-value=2.6e-05  Score=80.79  Aligned_cols=138  Identities=8%  Similarity=0.045  Sum_probs=96.1

Q ss_pred             EEecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 005473          549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (695)
Q Consensus       549 ~~l~~H~~~V~~v~fspdg~-~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~  627 (695)
                      ..+..+........|+++|+ +++++..++.|..|+. +++ +..+..+...+..++++++|+++++...++.|.+||.+
T Consensus        38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~  115 (305)
T 3dr2_A           38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD  115 (305)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence            33444555678999999998 6677777899999998 444 34555567789999999999877776667899999986


Q ss_pred             CCCeeEEEEecC-----CCCeEEEEEecCCCeEEEE----EeC-------------CCcEEEEECCCCeEEEEEecCCCc
Q 005473          628 NPDYSLRTFTGH-----STTVMSLDFHPSKEDLLCS----CDN-------------NSEIRYWSINNGSCAGVFKNFFES  685 (695)
Q Consensus       628 t~~~~l~~~~gh-----~~~V~sl~fspdg~~llaS----gs~-------------Dg~IriWDl~tg~~v~~~~~h~~~  685 (695)
                       +..  ..+..+     ...+..++++++|. ++++    |..             .+.|+.||..+++.....  +...
T Consensus       116 -g~~--~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~  189 (305)
T 3dr2_A          116 -GQA--HLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDH  189 (305)
T ss_dssp             -SCE--EEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESS
T ss_pred             -CCE--EEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCC
Confidence             443  222211     13467899999998 5555    321             256888888777654443  3345


Q ss_pred             EEEEEEeCCC
Q 005473          686 FVSVRVVQPR  695 (695)
Q Consensus       686 VtsVaf~sPd  695 (695)
                      ...++| +|+
T Consensus       190 p~gl~~-spd  198 (305)
T 3dr2_A          190 PNGLAF-SPD  198 (305)
T ss_dssp             EEEEEE-CTT
T ss_pred             CcceEE-cCC
Confidence            577888 875

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.17  E-value=2e-05  Score=85.18  Aligned_cols=88  Identities=5%  Similarity=-0.104  Sum_probs=69.1

Q ss_pred             EEEcCCCCEEEEEeC---------CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEe-CCCcEEEEECCC
Q 005473          603 VRFSPSLSRLATSSA---------DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINN  672 (695)
Q Consensus       603 v~~spdg~~LaTgs~---------DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs-~Dg~IriWDl~t  672 (695)
                      +.|+|++++++.+..         +..+.+||+.+.+. +..+.... ....++|+|||+.+++++. .++.|.++|+.+
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v-v~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t  346 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT-SGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE-EECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeE-EEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence            678899888876533         23566999998775 55554332 5889999999998888888 699999999999


Q ss_pred             CeEEEEEecCCCcEEEEEEeCC
Q 005473          673 GSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       673 g~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      ++.+.++..+..+ ..|+| ++
T Consensus       347 ~kvv~~I~vg~~P-~~i~~-~~  366 (368)
T 1mda_H          347 DQDQSSVELDKGP-ESLSV-QN  366 (368)
T ss_dssp             CEEEEECCCCSCC-CEEEC-CC
T ss_pred             CcEEEEEECCCCC-CEEEe-ec
Confidence            9999999877655 67877 65

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.11  E-value=6.9e-05  Score=81.40  Aligned_cols=123  Identities=12%  Similarity=0.125  Sum_probs=87.4

Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccc-------CCCeEEEEEcCC
Q 005473          546 TEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPS  608 (695)
Q Consensus       546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs----------~Dg~V~IWDl~t~~~~~~l~~H-------~~~V~~v~~spd  608 (695)
                      +.+..+.....+ . ++++|||++|+++.          .++.|.+||..+.+.+..+.-.       ......+.|+||
T Consensus        70 ~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spD  147 (386)
T 3sjl_D           70 RVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPD  147 (386)
T ss_dssp             EEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTT
T ss_pred             eEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCC
Confidence            344455544444 4 99999999888775          3678999999999988877432       124567999999


Q ss_pred             CCEEEEEeC--CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC-CeE
Q 005473          609 LSRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSC  675 (695)
Q Consensus       609 g~~LaTgs~--DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t-g~~  675 (695)
                      |++|+++..  ++.|.|+|+.+.+. +.++.-.  .  |..+.|.+...+++.+.||.+.+.++.+ ++.
T Consensus       148 Gk~lyVan~~~~~~VsVID~~t~~v-v~tI~v~--g--~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v  212 (386)
T 3sjl_D          148 GKTLLFYQFSPAPAVGVVDLEGKAF-KRMLDVP--D--CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP  212 (386)
T ss_dssp             SSEEEEEECSSSCEEEEEETTTTEE-EEEEECC--S--EEEEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred             CCEEEEEEcCCCCeEEEEECCCCcE-EEEEECC--C--cceeecCCCceeEEECCCCCEEEEECCCCCeE
Confidence            999988874  68999999999765 6666421  1  1223455544555667788888888875 554

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.06  E-value=5.3e-05  Score=81.88  Aligned_cols=80  Identities=8%  Similarity=-0.070  Sum_probs=62.0

Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccc-------CCCeEEEEEcCC
Q 005473          546 TEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPS  608 (695)
Q Consensus       546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs----------~Dg~V~IWDl~t~~~~~~l~~H-------~~~V~~v~~spd  608 (695)
                      +.+.++.....+  .+.|+||+++++++.          .++.|.+||+.+++.+.++..+       ......+.|+||
T Consensus        57 ~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpD  134 (368)
T 1mda_H           57 VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS  134 (368)
T ss_dssp             EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTT
T ss_pred             eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCC
Confidence            445555554555  799999999988886          3788999999999999988643       134568999999


Q ss_pred             CCEEEEEeC--CCeEEE--EECC
Q 005473          609 LSRLATSSA--DRTVRV--WDTE  627 (695)
Q Consensus       609 g~~LaTgs~--DgtIrv--WDl~  627 (695)
                      |++|+++..  +..|.+  +|+.
T Consensus       135 Gk~lyVan~~~~~~v~V~~iD~~  157 (368)
T 1mda_H          135 SACLLFFLFGSSAAAGLSVPGAS  157 (368)
T ss_dssp             SSCEEEEECSSSCEEEEEETTTE
T ss_pred             CCEEEEEccCCCCeEEEEEEchh
Confidence            999988875  456888  8874

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.04  E-value=7.1e-05  Score=80.80  Aligned_cols=115  Identities=14%  Similarity=-0.008  Sum_probs=86.0

Q ss_pred             EEcCCCCEEEEEeC--CC---cEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEEC
Q 005473          562 HFSPDGKLLATGGH--DK---KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDT  626 (695)
Q Consensus       562 ~fspdg~~LaSgs~--Dg---~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs----------~DgtIrvWDl  626 (695)
                      ...+++++++++..  ..   +|.+||..+++.+..+.....+  .++++||+++|+.+.          .++.|.+||+
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~  104 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP  104 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence            34467887777653  22   8899999999988887654443  999999999998876          3678999999


Q ss_pred             CCCCeeEEEEecC-------CCCeEEEEEecCCCeEEEEEeC-CCcEEEEECCCCeEEEE-Ee
Q 005473          627 ENPDYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGV-FK  680 (695)
Q Consensus       627 ~t~~~~l~~~~gh-------~~~V~sl~fspdg~~llaSgs~-Dg~IriWDl~tg~~v~~-~~  680 (695)
                      .+.+. +..+...       ......+.|+|||++++++... ++.|.++| .+++.+.. +.
T Consensus       105 ~t~~~-~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~  165 (373)
T 2mad_H          105 VTFLP-IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS  165 (373)
T ss_pred             CCCcE-EEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC
Confidence            87664 4444321       1235689999999988866643 68899999 99988887 64

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.90  E-value=0.00036  Score=76.98  Aligned_cols=153  Identities=14%  Similarity=0.178  Sum_probs=105.7

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEec-------CCCCCeEEEEEcCCCCEEEEEeCC-
Q 005473          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-------ASTSKVESCHFSPDGKLLATGGHD-  576 (695)
Q Consensus       505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~-------~H~~~V~~v~fspdg~~LaSgs~D-  576 (695)
                      .+.+++.|-.++.|.+++...+..               ..+.++++.       .....-..++..|+| +++++..+ 
T Consensus        95 r~~l~v~~l~s~~I~viD~~t~p~---------------~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~  158 (462)
T 2ece_A           95 RRFLIVPGLRSSRIYIIDTKPNPR---------------EPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNE  158 (462)
T ss_dssp             SCEEEEEBTTTCCEEEEECCSCTT---------------SCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEET
T ss_pred             CCEEEEccCCCCeEEEEECCCCCC---------------CceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCc
Confidence            446777788889999997643321               112222221       011123567888999 77777666 


Q ss_pred             -----CcEEEEECCCCeEEEEecccC---CCeEEEEEcCCCCEEEEEe-------------------CCCeEEEEECCCC
Q 005473          577 -----KKAVLWCTESFTVKSTLEEHT---QWITDVRFSPSLSRLATSS-------------------ADRTVRVWDTENP  629 (695)
Q Consensus       577 -----g~V~IWDl~t~~~~~~l~~H~---~~V~~v~~spdg~~LaTgs-------------------~DgtIrvWDl~t~  629 (695)
                           +.|.++|.++.+.+.++....   ..-+++.|+|+++.++++.                   .+.+|.+||+.++
T Consensus       159 ~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~  238 (462)
T 2ece_A          159 EGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR  238 (462)
T ss_dssp             TSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred             CCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC
Confidence                 789999999999999886322   3345788999999888885                   3689999999985


Q ss_pred             CeeEEEEecC-C-CCeEEEEE--ecCCCeEEEEEe-----CCCcEEEEECCCCe
Q 005473          630 DYSLRTFTGH-S-TTVMSLDF--HPSKEDLLCSCD-----NNSEIRYWSINNGS  674 (695)
Q Consensus       630 ~~~l~~~~gh-~-~~V~sl~f--spdg~~llaSgs-----~Dg~IriWDl~tg~  674 (695)
                      + .+.++..- . .....|.|  +|+++..++++-     .+++|.+|..+.++
T Consensus       239 k-~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~  291 (462)
T 2ece_A          239 K-RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK  291 (462)
T ss_dssp             E-EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE
T ss_pred             c-EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc
Confidence            4 36665532 1 23455655  999998888887     88899888776553

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.88  E-value=0.00015  Score=79.78  Aligned_cols=122  Identities=11%  Similarity=0.109  Sum_probs=84.0

Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccc-------CCCeEEEEEcCC
Q 005473          546 TEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPS  608 (695)
Q Consensus       546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs----------~Dg~V~IWDl~t~~~~~~l~~H-------~~~V~~v~~spd  608 (695)
                      +.+..+.....+  .+.++|||++|+++.          .++.|.++|..+.+.+..+.--       ......+.|+||
T Consensus       110 ~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spD  187 (426)
T 3c75_H          110 RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPD  187 (426)
T ss_dssp             EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTT
T ss_pred             EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCC
Confidence            344555544445  899999999888876          4678999999999988877421       234567899999


Q ss_pred             CCEEEEEeC--CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe
Q 005473          609 LSRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS  674 (695)
Q Consensus       609 g~~LaTgs~--DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~  674 (695)
                      +++|+++..  ++.|.+.|+.+.+. +.++...  .+  ....|++...+++.+.||.+.+.|..+++
T Consensus       188 Gk~lyV~n~~~~~~VsVID~~t~kv-v~~I~v~--g~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~  250 (426)
T 3c75_H          188 NKNLLFYQFSPAPAVGVVDLEGKTF-DRMLDVP--DC--YHIFPASPTVFYMNCRDGSLARVDFADGE  250 (426)
T ss_dssp             SSEEEEEECSSSCEEEEEETTTTEE-EEEEECC--SE--EEEEEEETTEEEEEETTSSEEEEECCTTC
T ss_pred             CCEEEEEecCCCCeEEEEECCCCeE-EEEEEcC--Cc--eeeccCCCcEEEEEcCCCCEEEEECCCCc
Confidence            999998874  57899999998765 5555531  11  33445544455555566666666664443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.87  E-value=0.0016  Score=67.13  Aligned_cols=129  Identities=8%  Similarity=0.033  Sum_probs=90.6

Q ss_pred             EEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 005473          559 ESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (695)
Q Consensus       559 ~~v~fspdg~~LaSgs-~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~  637 (695)
                      ..+++.  ++.|+.+. .++.|.++|..+.+.+.++..-...  ...+++|+..|+++..+++|.++|..+.+. +..+.
T Consensus        69 eGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v-~~~I~  143 (266)
T 2iwa_A           69 EGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKL-IKKHN  143 (266)
T ss_dssp             EEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCE-EEEEE
T ss_pred             EEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcE-EEEEE
Confidence            345554  44555544 5799999999999999888532111  233455777777777788999999998765 44433


Q ss_pred             -cC----CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecC-------------CCcEEEEEEeCCC
Q 005473          638 -GH----STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF-------------FESFVSVRVVQPR  695 (695)
Q Consensus       638 -gh----~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h-------------~~~VtsVaf~sPd  695 (695)
                       +.    -..+..+.|. +| .+++....++.|.+.|..+++.+..+...             ......|+| +|+
T Consensus       144 Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~-~~~  216 (266)
T 2iwa_A          144 VKYNGHRVIRLNELEYI-NG-EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAW-DQE  216 (266)
T ss_dssp             CEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEE-ETT
T ss_pred             ECCCCcccccceeEEEE-CC-EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEE-cCC
Confidence             21    1246788888 66 57777777889999999999999998732             135588999 874

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.83  E-value=0.00012  Score=80.72  Aligned_cols=114  Identities=11%  Similarity=0.005  Sum_probs=88.3

Q ss_pred             CCCCEEEEEeCC-----CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEECCCC
Q 005473          565 PDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTENP  629 (695)
Q Consensus       565 pdg~~LaSgs~D-----g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs----------~DgtIrvWDl~t~  629 (695)
                      ++++.++++...     +.|.++|..+.+.+.++..-..+  .+.++||+++|+++.          .++.|.++|..+.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            467766666553     69999999999999988654455  899999999887775          3678999999987


Q ss_pred             CeeEEEEecC-------CCCeEEEEEecCCCeEEEEEeC-CCcEEEEECCCCeEEEEEec
Q 005473          630 DYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKN  681 (695)
Q Consensus       630 ~~~l~~~~gh-------~~~V~sl~fspdg~~llaSgs~-Dg~IriWDl~tg~~v~~~~~  681 (695)
                      +. +..+.-.       ......+.|+|||++++++... ++.|.+.|+.+++.+..+..
T Consensus       160 ~v-v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v  218 (426)
T 3c75_H          160 LP-IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV  218 (426)
T ss_dssp             CE-EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred             cE-EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc
Confidence            75 5554321       1235678999999988866543 68999999999999888874

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.83  E-value=0.0053  Score=61.77  Aligned_cols=135  Identities=7%  Similarity=0.025  Sum_probs=90.8

Q ss_pred             CCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCCe
Q 005473          556 SKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDY  631 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs~---Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTg-s~DgtIrvWDl~t~~~  631 (695)
                      .....+++++++..|+.+..   .+.|.+++++.................+++++++..|+.+ ...+.|.++|++....
T Consensus       122 ~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~  201 (267)
T 1npe_A          122 VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR  201 (267)
T ss_dssp             SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE
T ss_pred             CCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce
Confidence            34689999997666666554   3688888886433222222333567899999987766554 4568999999985332


Q ss_pred             eEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCC-CcEEEEEEeCCC
Q 005473          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFF-ESFVSVRVVQPR  695 (695)
Q Consensus       632 ~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~-~~VtsVaf~sPd  695 (695)
                       ...+.+ ......+++.  +..++++...++.|.++|..+++.+..+.... .....|++ .|+
T Consensus       202 -~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~-~~~  261 (267)
T 1npe_A          202 -RKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITI-ALS  261 (267)
T ss_dssp             -EEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEE-ECS
T ss_pred             -EEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeee-cCc
Confidence             223332 2345666654  56677777778999999999999999987543 23577887 664

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.83  E-value=0.0068  Score=60.97  Aligned_cols=122  Identities=7%  Similarity=0.000  Sum_probs=83.3

Q ss_pred             CCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC---CCeEEEEECCCCCe
Q 005473          556 SKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDY  631 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs-~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~---DgtIrvWDl~t~~~  631 (695)
                      ....++++++++..|+.+. .++.|.++|++.......+.........++++|++..|+.+..   .+.|.+++++....
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~  158 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR  158 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc
Confidence            4578999999766555554 5688999998754333233222246789999997666655543   36898999875332


Q ss_pred             eEEEE-ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEE
Q 005473          632 SLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF  679 (695)
Q Consensus       632 ~l~~~-~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~  679 (695)
                        ..+ .........++|++++..++++....+.|.++|+........+
T Consensus       159 --~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~  205 (267)
T 1npe_A          159 --RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL  205 (267)
T ss_dssp             --EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE
T ss_pred             --EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEe
Confidence              222 2233467899999998888888888899999999754433333

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.79  E-value=0.00095  Score=68.48  Aligned_cols=123  Identities=11%  Similarity=0.123  Sum_probs=87.0

Q ss_pred             CCCEEEEEe-CCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecC--C--
Q 005473          566 DGKLLATGG-HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH--S--  640 (695)
Q Consensus       566 dg~~LaSgs-~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh--~--  640 (695)
                      ++..|+.+. .++.+.+||..+.+.+.++..... =..++  +++..|+.+..++.|+++|..+.+. +..+...  .  
T Consensus        95 ~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~e-G~glt--~dg~~L~~SdGs~~i~~iDp~T~~v-~~~I~V~~~g~~  170 (262)
T 3nol_A           95 WKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGE-GWGLT--HNDQYLIMSDGTPVLRFLDPESLTP-VRTITVTAHGEE  170 (262)
T ss_dssp             ETTEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCCEE--ECSSCEEECCSSSEEEEECTTTCSE-EEEEECEETTEE
T ss_pred             eCCEEEEEEeeCCEEEEEECccCcEEEEEECCCC-ceEEe--cCCCEEEEECCCCeEEEEcCCCCeE-EEEEEeccCCcc
Confidence            355555555 489999999999999988864221 12333  4667777666678899999998775 4443321  1  


Q ss_pred             -CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecC------------CCcEEEEEEeCCC
Q 005473          641 -TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF------------FESFVSVRVVQPR  695 (695)
Q Consensus       641 -~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h------------~~~VtsVaf~sPd  695 (695)
                       ..+..+.|. +| .+++..-.+..|.+.|..+|+.+..+...            .+....||| +|+
T Consensus       171 ~~~lNELe~~-~G-~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~-dp~  235 (262)
T 3nol_A          171 LPELNELEWV-DG-EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAW-DKE  235 (262)
T ss_dssp             CCCEEEEEEE-TT-EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEE-ETT
T ss_pred             ccccceeEEE-CC-EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEE-cCC
Confidence             334567776 66 47777777889999999999999988742            135588999 874

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.74  E-value=0.001  Score=73.35  Aligned_cols=123  Identities=13%  Similarity=0.162  Sum_probs=88.9

Q ss_pred             eEEEEEcCCCCEEEEEe-------------------CCCcEEEEECCCCeEEEEeccc--CCCeEEEEE--cCCCCEEEE
Q 005473          558 VESCHFSPDGKLLATGG-------------------HDKKAVLWCTESFTVKSTLEEH--TQWITDVRF--SPSLSRLAT  614 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs-------------------~Dg~V~IWDl~t~~~~~~l~~H--~~~V~~v~~--spdg~~LaT  614 (695)
                      -+.+.|+|+++.+++..                   .+.+|.+||+.+++.+.++..-  ......|+|  +|+++++++
T Consensus       190 ~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV  269 (462)
T 2ece_A          190 AYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFI  269 (462)
T ss_dssp             CCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEE
T ss_pred             cceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEE
Confidence            45688999999888885                   4789999999998888777532  234556766  999998877


Q ss_pred             Ee------CCCeEEEEECCCCCee-EEEE--ec----------------CCCCeEEEEEecCCCeEEEEEeCCCcEEEEE
Q 005473          615 SS------ADRTVRVWDTENPDYS-LRTF--TG----------------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS  669 (695)
Q Consensus       615 gs------~DgtIrvWDl~t~~~~-l~~~--~g----------------h~~~V~sl~fspdg~~llaSgs~Dg~IriWD  669 (695)
                      ++      .+++|.+|..+.+... +.++  ..                -...+..|.+++||+.|+++.-..+.|.+||
T Consensus       270 ~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~Vavfd  349 (462)
T 2ece_A          270 NMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYD  349 (462)
T ss_dssp             EEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEE
T ss_pred             EEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEE
Confidence            76      5668888776653321 1111  10                0245788999999999998888899999999


Q ss_pred             CC---CCeEEEEEe
Q 005473          670 IN---NGSCAGVFK  680 (695)
Q Consensus       670 l~---tg~~v~~~~  680 (695)
                      +.   +.+.+..+.
T Consensus       350 V~d~~~~~lv~~I~  363 (462)
T 2ece_A          350 ISNPFKPVLTGKVK  363 (462)
T ss_dssp             CSSTTSCEEEEEEE
T ss_pred             ecCCCCcEEEEEEE
Confidence            85   245666665

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.73  E-value=0.00077  Score=78.65  Aligned_cols=115  Identities=10%  Similarity=0.103  Sum_probs=82.5

Q ss_pred             CCCC---EEEEEeCCCcEEEEECCCCeEEEEecccC-CC---------------------------e-----------EE
Q 005473          565 PDGK---LLATGGHDKKAVLWCTESFTVKSTLEEHT-QW---------------------------I-----------TD  602 (695)
Q Consensus       565 pdg~---~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~-~~---------------------------V-----------~~  602 (695)
                      .+|+   .|+.++.+|.|+++|.++++.+....... ..                           +           ..
T Consensus       314 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~  393 (689)
T 1yiq_A          314 IDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQP  393 (689)
T ss_dssp             ETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSC
T ss_pred             cCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCc
Confidence            3565   78899999999999999999875432110 00                           0           12


Q ss_pred             EEEcCCCCEEEEEeC---------------------------------------------CCeEEEEECCCCCeeEEEEe
Q 005473          603 VRFSPSLSRLATSSA---------------------------------------------DRTVRVWDTENPDYSLRTFT  637 (695)
Q Consensus       603 v~~spdg~~LaTgs~---------------------------------------------DgtIrvWDl~t~~~~l~~~~  637 (695)
                      ++|+|+..+|++...                                             +|+|+.||+.+++. +..+.
T Consensus       394 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~-~W~~~  472 (689)
T 1yiq_A          394 MSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQA-AWEVP  472 (689)
T ss_dssp             CEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEE-EEEEE
T ss_pred             ceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCe-EeEcc
Confidence            678888777776521                                             37899999999875 55555


Q ss_pred             cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecC
Q 005473          638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF  682 (695)
Q Consensus       638 gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h  682 (695)
                      .+. .+....+...+. +++.|+.||.|++||.++|+.+..++.+
T Consensus       473 ~~~-~~~~g~~~tagg-lvf~gt~dg~l~a~D~~tG~~lw~~~~~  515 (689)
T 1yiq_A          473 YVT-IFNGGTLSTAGN-LVFEGSADGRVIAYAADTGEKLWEQPAA  515 (689)
T ss_dssp             ESS-SCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CCC-CccCccceECCC-EEEEECCCCcEEEEECCCCccceeeeCC
Confidence            443 233345556666 6668899999999999999999998854

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.73  E-value=0.001  Score=68.43  Aligned_cols=162  Identities=9%  Similarity=0.014  Sum_probs=107.0

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      .+..+.+.++.|+.++...+..                ...+  +.. ...-..+++.. +++.+..-.++.+.+||..+
T Consensus        66 ~Ly~stG~~g~v~~iD~~Tgkv----------------~~~~--l~~-~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~T  125 (268)
T 3nok_A           66 HFFESTGHQGTLRQLSLESAQP----------------VWME--RLG-NIFAEGLASDG-ERLYQLTWTEGLLFTWSGMP  125 (268)
T ss_dssp             EEEEEETTTTEEEECCSSCSSC----------------SEEE--ECT-TCCEEEEEECS-SCEEEEESSSCEEEEEETTT
T ss_pred             EEEEEcCCCCEEEEEECCCCcE----------------EeEE--CCC-CcceeEEEEeC-CEEEEEEccCCEEEEEECCc
Confidence            6667777777888886544321                1122  222 11123355532 34444444689999999999


Q ss_pred             CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec--CC---CCeEEEEEecCCCeEEEEEeC
Q 005473          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG--HS---TTVMSLDFHPSKEDLLCSCDN  661 (695)
Q Consensus       587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~g--h~---~~V~sl~fspdg~~llaSgs~  661 (695)
                      .+.+.++..-. .-..++  +++..|+.+..++.|+++|..+.+. +..+..  +.   ..+..+.|. +| .+++..-.
T Consensus       126 l~~~~ti~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v-~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanvw~  199 (268)
T 3nok_A          126 PQRERTTRYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFAL-VGAVQVKLRGQPVELINELECA-NG-VIYANIWH  199 (268)
T ss_dssp             TEEEEEEECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TT-EEEEEETT
T ss_pred             CcEEEEEeCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeE-EEEEEeCCCCcccccccccEEe-CC-EEEEEECC
Confidence            99999886422 223444  4577887777789999999998775 444332  21   245677877 66 47777767


Q ss_pred             CCcEEEEECCCCeEEEEEecC-------------CCcEEEEEEeCCC
Q 005473          662 NSEIRYWSINNGSCAGVFKNF-------------FESFVSVRVVQPR  695 (695)
Q Consensus       662 Dg~IriWDl~tg~~v~~~~~h-------------~~~VtsVaf~sPd  695 (695)
                      +..|.+.|..+|+.+..+...             .+....||| +|+
T Consensus       200 s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~-dp~  245 (268)
T 3nok_A          200 SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAV-EPG  245 (268)
T ss_dssp             CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEE-CTT
T ss_pred             CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEE-cCC
Confidence            889999999999999988732             135688999 874

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.72  E-value=0.0006  Score=79.43  Aligned_cols=120  Identities=8%  Similarity=0.025  Sum_probs=87.2

Q ss_pred             EEEcCCC---CEEEEEeCCCcEEEEECCCCeEEEEecccC-----------CCe------------------------EE
Q 005473          561 CHFSPDG---KLLATGGHDKKAVLWCTESFTVKSTLEEHT-----------QWI------------------------TD  602 (695)
Q Consensus       561 v~fspdg---~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~-----------~~V------------------------~~  602 (695)
                      +....+|   .+|+.++.+|.|+++|.++++.+..+....           .++                        ..
T Consensus       318 ~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~  397 (677)
T 1kb0_A          318 ADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHP  397 (677)
T ss_dssp             EEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSC
T ss_pred             EecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCC
Confidence            3444477   689999999999999999999887664221           111                        14


Q ss_pred             EEEcCCCCEEEEEeC-------------------------------------------CCeEEEEECCCCCeeEEEEecC
Q 005473          603 VRFSPSLSRLATSSA-------------------------------------------DRTVRVWDTENPDYSLRTFTGH  639 (695)
Q Consensus       603 v~~spdg~~LaTgs~-------------------------------------------DgtIrvWDl~t~~~~l~~~~gh  639 (695)
                      ++|+|+..++++...                                           .+.|..||+.+++. +..+. +
T Consensus       398 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~-~W~~~-~  475 (677)
T 1kb0_A          398 MSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA-AWSVE-H  475 (677)
T ss_dssp             CEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE-EEEEE-E
T ss_pred             ceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE-EeecC-C
Confidence            688898888877542                                           27899999999775 44444 3


Q ss_pred             CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCC
Q 005473          640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFF  683 (695)
Q Consensus       640 ~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~  683 (695)
                      ...+....+..++. +++.++.||.|++||.++|+++..+....
T Consensus       476 ~~~~~~g~~~~~g~-~v~~g~~dg~l~a~D~~tG~~lw~~~~~~  518 (677)
T 1kb0_A          476 VSPWNGGTLTTAGN-VVFQGTADGRLVAYHAATGEKLWEAPTGT  518 (677)
T ss_dssp             SSSCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             CCCCcCcceEeCCC-EEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence            33455555667776 55578999999999999999999998443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.67  E-value=0.00063  Score=77.36  Aligned_cols=135  Identities=9%  Similarity=0.012  Sum_probs=98.5

Q ss_pred             CeEEEEE-c-CCCCEEEEEe------------------CCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEe
Q 005473          557 KVESCHF-S-PDGKLLATGG------------------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS  616 (695)
Q Consensus       557 ~V~~v~f-s-pdg~~LaSgs------------------~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs  616 (695)
                      .+..+++ + |+++++++++                  .++.|.+.|.++.+.+..+.--. ....++++|+|+++++.+
T Consensus       135 ~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~  213 (595)
T 1fwx_A          135 GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTS  213 (595)
T ss_dssp             SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEE
T ss_pred             CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEe
Confidence            3778888 5 8999998885                  34689999999999888876322 456788999999998888


Q ss_pred             CCC--------------------------------------eEEEEECCC--CCeeEEEEecCCCCeEEEEEecCCCeEE
Q 005473          617 ADR--------------------------------------TVRVWDTEN--PDYSLRTFTGHSTTVMSLDFHPSKEDLL  656 (695)
Q Consensus       617 ~Dg--------------------------------------tIrvWDl~t--~~~~l~~~~gh~~~V~sl~fspdg~~ll  656 (695)
                      .+.                                      .|.|.|.++  ++..+..+.. .....++.++|||++++
T Consensus       214 ~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~  292 (595)
T 1fwx_A          214 YNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLC  292 (595)
T ss_dssp             SCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEE
T ss_pred             cCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEE
Confidence            553                                      367777776  3321333322 12456799999999999


Q ss_pred             EEEeCCCcEEEEECCCCe------------EEEEEecCCCcEEEEEEeCCC
Q 005473          657 CSCDNNSEIRYWSINNGS------------CAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       657 aSgs~Dg~IriWDl~tg~------------~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +++..+..|.++|+.+.+            .+..+....+ ...++| +|+
T Consensus       293 V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~g-P~h~aF-~~d  341 (595)
T 1fwx_A          293 VAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG-PLHTAF-DGR  341 (595)
T ss_dssp             EECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSC-EEEEEE-CTT
T ss_pred             EeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCC-cceEEE-CCC
Confidence            999999999999998653            3445544444 477888 875

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.61  E-value=0.0025  Score=65.68  Aligned_cols=132  Identities=8%  Similarity=0.025  Sum_probs=88.6

Q ss_pred             eeeeEEEecCCC-CCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeEEEEeccc-CCCeEEEEEcCCCCEEE-EEeCC
Q 005473          544 TFTEFQLIPAST-SKVESCHFSPDGKLLATGGH--DKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLA-TSSAD  618 (695)
Q Consensus       544 ~~~~v~~l~~H~-~~V~~v~fspdg~~LaSgs~--Dg~V~IWDl~t~~~~~~l~~H-~~~V~~v~~spdg~~La-Tgs~D  618 (695)
                      ..+.+.++.... .....+.|++++.++++.+.  ++.|+++|+.+++.+..+.-. ......+++.  +..|+ +.-.+
T Consensus         8 ~~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~   85 (266)
T 2iwa_A            8 IVEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK   85 (266)
T ss_dssp             EEEEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred             CceEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence            334555553222 23579999998765555543  589999999999998887421 2233355555  44554 44568


Q ss_pred             CeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec
Q 005473          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKN  681 (695)
Q Consensus       619 gtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~  681 (695)
                      +.|.++|..+.+. +.++..-...-  ..+++||..++++. .++.|+++|..+.+.+..+..
T Consensus        86 ~~v~viD~~t~~v-~~~i~~g~~~g--~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~V  144 (266)
T 2iwa_A           86 NIGFIYDRRTLSN-IKNFTHQMKDG--WGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNV  144 (266)
T ss_dssp             SEEEEEETTTTEE-EEEEECCSSSC--CEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEEC
T ss_pred             CEEEEEECCCCcE-EEEEECCCCCe--EEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEE
Confidence            8999999998664 66664221222  33566888788665 588999999999888888773

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.61  E-value=0.0011  Score=68.15  Aligned_cols=118  Identities=13%  Similarity=0.031  Sum_probs=81.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 005473          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (695)
Q Consensus       555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~  634 (695)
                      ...+.++...+++. |+.++.++.|..||.. ++.+..+......+.++.+.+++.+++ ++  +.|..|| .++.. +.
T Consensus       136 ~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~-~~  208 (330)
T 3hxj_A          136 KAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTE-KW  208 (330)
T ss_dssp             SCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCE-EE
T ss_pred             CceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcE-EE
Confidence            33456667777777 5567778999999998 777777765566777888877776544 44  7899999 55554 45


Q ss_pred             EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecC
Q 005473          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF  682 (695)
Q Consensus       635 ~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h  682 (695)
                      .+......+.++.+.++|. ++ .++.++.|..+|. +++.+..+...
T Consensus       209 ~~~~~~~~~~~~~~~~~g~-l~-v~t~~~gl~~~~~-~g~~~~~~~~~  253 (330)
T 3hxj_A          209 NFYAGYWTVTRPAISEDGT-IY-VTSLDGHLYAINP-DGTEKWRFKTG  253 (330)
T ss_dssp             EECCSSCCCSCCEECTTSC-EE-EEETTTEEEEECT-TSCEEEEEECS
T ss_pred             EEccCCcceeceEECCCCe-EE-EEcCCCeEEEECC-CCCEeEEeeCC
Confidence            5554556688888888876 44 4566788888874 56666655543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.57  E-value=0.0072  Score=61.29  Aligned_cols=122  Identities=11%  Similarity=0.094  Sum_probs=86.0

Q ss_pred             CCEEEE-EeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec--CC---
Q 005473          567 GKLLAT-GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG--HS---  640 (695)
Q Consensus       567 g~~LaS-gs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~g--h~---  640 (695)
                      +..|+. .-.++.+.+||..+.+.+.++..... =..++  +++..|+.+..++.|+++|..+.+. +.++..  +.   
T Consensus        74 ~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~-~~~I~V~~~g~~~  149 (243)
T 3mbr_X           74 RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQ-VGSIKVTAGGRPL  149 (243)
T ss_dssp             TTEEEEEESSSSEEEEEETTTTEEEEEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCE-EEEEECEETTEEC
T ss_pred             CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeE-EEEEEEccCCccc
Confidence            444444 44589999999999999998864322 23444  4566777666788999999998765 444432  11   


Q ss_pred             CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecC-------------CCcEEEEEEeCCC
Q 005473          641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF-------------FESFVSVRVVQPR  695 (695)
Q Consensus       641 ~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h-------------~~~VtsVaf~sPd  695 (695)
                      ..+..+.|. +|. +++..-.+..|.+.|.++|+.+..+...             .+..+.||| +|+
T Consensus       150 ~~lNeLe~~-~G~-lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~-d~~  214 (243)
T 3mbr_X          150 DNLNELEWV-NGE-LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAF-DAE  214 (243)
T ss_dssp             CCEEEEEEE-TTE-EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEE-ETT
T ss_pred             ccceeeEEe-CCE-EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEE-cCC
Confidence            345667766 554 7777767889999999999999988722             135588999 874

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.53  E-value=0.0016  Score=66.91  Aligned_cols=126  Identities=10%  Similarity=-0.027  Sum_probs=85.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 005473          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (695)
Q Consensus       555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~  634 (695)
                      ...+.++.+.+++.+++. +  +.|..|| .+++.+..+......+.++.+.+++. |..++.++.|..+|.. +.. +.
T Consensus       176 ~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~-g~~-~~  248 (330)
T 3hxj_A          176 DAITSAASIGKDGTIYFG-S--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPD-GTE-KW  248 (330)
T ss_dssp             SCCCSCCEECTTCCEEEE-S--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTT-SCE-EE
T ss_pred             CCceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCC-CCE-eE
Confidence            345677778778875544 4  7799999 77777777766667788888888764 5556678888888853 343 45


Q ss_pred             EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEE
Q 005473          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVR  690 (695)
Q Consensus       635 ~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVa  690 (695)
                      .+......+.++.+.+++. ++ .++.+|.|..+|. +++.+..+......+.++.
T Consensus       249 ~~~~~~~~~~~~~~~~~g~-l~-v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~  301 (330)
T 3hxj_A          249 RFKTGKRIESSPVIGNTDT-IY-FGSYDGHLYAINP-DGTEKWNFETGSWIIATPV  301 (330)
T ss_dssp             EEECSSCCCSCCEECTTSC-EE-EECTTCEEEEECT-TSCEEEEEECSSCCCSCCE
T ss_pred             EeeCCCCccccceEcCCCe-EE-EecCCCCEEEECC-CCcEEEEEEcCCccccceE
Confidence            5554444455566666665 44 6777889999995 6777776664444444443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.47  E-value=0.0023  Score=65.67  Aligned_cols=129  Identities=12%  Similarity=0.086  Sum_probs=87.0

Q ss_pred             eeeEEEecCCCC--CeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEE-eCCC
Q 005473          545 FTEFQLIPASTS--KVESCHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADR  619 (695)
Q Consensus       545 ~~~v~~l~~H~~--~V~~v~fspdg~~LaSgs~Dg--~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTg-s~Dg  619 (695)
                      +..+.++ .|..  ....+.|+ ++.++.+++.+|  .|+++|+.+++.+..+.-.. .+......+++..|+.. -.++
T Consensus        31 ~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~  107 (262)
T 3nol_A           31 YQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNG  107 (262)
T ss_dssp             EEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSS
T ss_pred             eEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCC
Confidence            3444555 3433  34788998 777777777776  89999999999988875432 33332222334555444 4588


Q ss_pred             eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec
Q 005473          620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKN  681 (695)
Q Consensus       620 tIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~  681 (695)
                      .+.+||..+.+. +.++.... .-..+  ++++..++++-+ ++.|+++|..+.+.+..+..
T Consensus       108 ~v~v~D~~t~~~-~~ti~~~~-eG~gl--t~dg~~L~~SdG-s~~i~~iDp~T~~v~~~I~V  164 (262)
T 3nol_A          108 LGFVWNIRNLRQ-VRSFNYDG-EGWGL--THNDQYLIMSDG-TPVLRFLDPESLTPVRTITV  164 (262)
T ss_dssp             EEEEEETTTCCE-EEEEECSS-CCCCE--EECSSCEEECCS-SSEEEEECTTTCSEEEEEEC
T ss_pred             EEEEEECccCcE-EEEEECCC-CceEE--ecCCCEEEEECC-CCeEEEEcCCCCeEEEEEEe
Confidence            999999998775 66666422 22333  456777776654 78899999999888887764

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.43  E-value=0.00079  Score=79.27  Aligned_cols=114  Identities=10%  Similarity=0.073  Sum_probs=78.2

Q ss_pred             CeEEEEEc-CCCCEEEEEeC-CC----cEEEEECCCC-eEEE-EecccCCCeEEEEEcCCCCEEEEEeCC-----CeEEE
Q 005473          557 KVESCHFS-PDGKLLATGGH-DK----KAVLWCTESF-TVKS-TLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRV  623 (695)
Q Consensus       557 ~V~~v~fs-pdg~~LaSgs~-Dg----~V~IWDl~t~-~~~~-~l~~H~~~V~~v~~spdg~~LaTgs~D-----gtIrv  623 (695)
                      .+...+|| |||++||-+.. +|    .|+|+|+.++ +.+. .+.   .....++|+||++.|+....|     ..|++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            57889999 99998775443 33    4999999988 6321 111   123468899999888776655     25888


Q ss_pred             EECCCCCe-eEEEEe-cCCCCeEEEEEecCCCeEEEEEeC--CCcEEEEECCCC
Q 005473          624 WDTENPDY-SLRTFT-GHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNG  673 (695)
Q Consensus       624 WDl~t~~~-~l~~~~-gh~~~V~sl~fspdg~~llaSgs~--Dg~IriWDl~tg  673 (695)
                      +++.++.. .+..+. .......++.|+|||+.|+++...  ...|+++|+.++
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            89887532 122332 233456789999999988776643  456888999875

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.40  E-value=0.0019  Score=75.18  Aligned_cols=93  Identities=6%  Similarity=0.092  Sum_probs=68.6

Q ss_pred             CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe-cCCCCeEEEEEecCCCeE
Q 005473          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDL  655 (695)
Q Consensus       577 g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~-gh~~~V~sl~fspdg~~l  655 (695)
                      +.|..||+.+++.+..+.. ...+....+..++.++++++.|+.|++||+++++. +..+. ++.....-+.|..+|+.+
T Consensus       457 g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~-lw~~~~~~~~~~~p~~y~~~G~~~  534 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK-LWEAPTGTGVVAAPSTYMVDGRQY  534 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCce-eeeeeCCCCcccCCEEEEeCCEEE
Confidence            7899999999999888763 34455555667788999999999999999999886 66655 343344566777888866


Q ss_pred             EEEEeC----------------CCcEEEEECC
Q 005473          656 LCSCDN----------------NSEIRYWSIN  671 (695)
Q Consensus       656 laSgs~----------------Dg~IriWDl~  671 (695)
                      ++..+.                .+.|.+|.+.
T Consensus       535 v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~  566 (677)
T 1kb0_A          535 VSVAVGWGGVYGLAARATERQGPGTVYTFVVG  566 (677)
T ss_dssp             EEEEECCCHHHHHHCCSCSCCCCCEEEEEEET
T ss_pred             EEEeccCCccccccccccccCCCCeEEEEecc
Confidence            655433                3567777765

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.40  E-value=0.019  Score=59.52  Aligned_cols=113  Identities=7%  Similarity=0.006  Sum_probs=75.6

Q ss_pred             CeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEec---c-cCCCeEEEEEcC-CCCEEEEEeC-------------
Q 005473          557 KVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLE---E-HTQWITDVRFSP-SLSRLATSSA-------------  617 (695)
Q Consensus       557 ~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~t~~~~~~l~---~-H~~~V~~v~~sp-dg~~LaTgs~-------------  617 (695)
                      .+.++++.+ +++ |+.+...+.|.++|..++.......   + .......+++.+ +|.++++-..             
T Consensus        81 ~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~  159 (322)
T 2fp8_A           81 RTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD  159 (322)
T ss_dssp             CEEEEEEETTTTE-EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred             CCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence            478899997 555 5555555568888877654322111   1 123578899999 8887776532             


Q ss_pred             ----CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473          618 ----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (695)
Q Consensus       618 ----DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t  672 (695)
                          ++.|..||..++..  ..+.........|+|+|++..++++-..++.|++||+..
T Consensus       160 ~~~~~g~v~~~d~~~~~~--~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          160 TSDKTGRLIKYDPSTKET--TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             HTCCCEEEEEEETTTTEE--EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred             ccCCCceEEEEeCCCCEE--EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence                36799999876543  222211234567999999987777777778999999874

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.38  E-value=0.0073  Score=63.78  Aligned_cols=109  Identities=8%  Similarity=-0.011  Sum_probs=74.3

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCe--
Q 005473          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV--  643 (695)
Q Consensus       566 dg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V--  643 (695)
                      ++..|+.++.|+.|..+|..+++.+................  +..++.++.++.|..+|.++++. +..+.......  
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~-~W~~~~~~~~~~~  178 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAV-KWTVNLDMPSLSL  178 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCE-EEEEECCC-----
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcE-EEEEeCCCCceee
Confidence            45678888899999999999999887775443222222222  45888888999999999998875 44443322111  


Q ss_pred             ---EEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473          644 ---MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  680 (695)
Q Consensus       644 ---~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~  680 (695)
                         ...... + . .++.++.++.|..+|..+|+.+..+.
T Consensus       179 ~~~~~~~~~-~-~-~v~~g~~~g~l~~~d~~tG~~~w~~~  215 (376)
T 3q7m_A          179 RGESAPTTA-F-G-AAVVGGDNGRVSAVLMEQGQMIWQQR  215 (376)
T ss_dssp             CCCCCCEEE-T-T-EEEECCTTTEEEEEETTTCCEEEEEE
T ss_pred             cCCCCcEEE-C-C-EEEEEcCCCEEEEEECCCCcEEEEEe
Confidence               222223 3 3 34567789999999999998887665

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.26  E-value=0.0043  Score=72.29  Aligned_cols=104  Identities=8%  Similarity=0.072  Sum_probs=73.9

Q ss_pred             CCcEEEEECCCCeEEEEeccc-------------------------------CCCeEEEEEcCCCCEEEEEeCCCe----
Q 005473          576 DKKAVLWCTESFTVKSTLEEH-------------------------------TQWITDVRFSPSLSRLATSSADRT----  620 (695)
Q Consensus       576 Dg~V~IWDl~t~~~~~~l~~H-------------------------------~~~V~~v~~spdg~~LaTgs~Dgt----  620 (695)
                      |+.|+.||.++++.+..+...                               ......++++|+..+|+.+..++.    
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~  261 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP  261 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence            789999999999998877421                               001125788898889999887764    


Q ss_pred             ---------------EEEEECCCCCeeEEEEec--CC-------CCeEEEEEecCCC--eEEEEEeCCCcEEEEECCCCe
Q 005473          621 ---------------VRVWDTENPDYSLRTFTG--HS-------TTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNGS  674 (695)
Q Consensus       621 ---------------IrvWDl~t~~~~l~~~~g--h~-------~~V~sl~fspdg~--~llaSgs~Dg~IriWDl~tg~  674 (695)
                                     |..||.++++. +..+..  |.       ..+...++..+|.  .+++.++.+|.|+++|.++|+
T Consensus       262 ~~~~~~~gd~~y~~~v~AlD~~TG~~-~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  340 (689)
T 1yiq_A          262 KWRSQAKGDNLFLSSIVAVNADTGEY-VWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE  340 (689)
T ss_dssp             HHHHTTCSCCTTTTEEEEEETTTCCE-EEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             CCCCCCCCCceeeeeEEEEEccCCce-eEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence                           99999999885 555543  32       1222233333553  367789999999999999999


Q ss_pred             EEEEEe
Q 005473          675 CAGVFK  680 (695)
Q Consensus       675 ~v~~~~  680 (695)
                      .+...+
T Consensus       341 ~l~~~~  346 (689)
T 1yiq_A          341 LLSAKG  346 (689)
T ss_dssp             EEEEEE
T ss_pred             Eecccc
Confidence            986544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.24  E-value=0.012  Score=59.66  Aligned_cols=129  Identities=12%  Similarity=0.032  Sum_probs=86.6

Q ss_pred             eeeEEEecCCC--CCeEEEEEcCCCCEEEEEeCC--CcEEEEECCCCeEEEEecccCCC-eEEEEEcCCCCEEEEEeCCC
Q 005473          545 FTEFQLIPAST--SKVESCHFSPDGKLLATGGHD--KKAVLWCTESFTVKSTLEEHTQW-ITDVRFSPSLSRLATSSADR  619 (695)
Q Consensus       545 ~~~v~~l~~H~--~~V~~v~fspdg~~LaSgs~D--g~V~IWDl~t~~~~~~l~~H~~~-V~~v~~spdg~~LaTgs~Dg  619 (695)
                      ...+..+ .|.  ..+..+.|+. +.++.+.+.+  ..|+++|+.+++.+..+.-.... -..+++.. +++.+..-.++
T Consensus         9 ~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~   85 (243)
T 3mbr_X            9 YRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNH   85 (243)
T ss_dssp             EEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSS
T ss_pred             eEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeCC
Confidence            3444555 444  3466899986 6667777765  48999999999998877533221 12344432 33444455689


Q ss_pred             eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec
Q 005473          620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKN  681 (695)
Q Consensus       620 tIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~  681 (695)
                      .+.+||.++.+. +.++... ..-..++  +++..+++|- .++.|+++|..+.+.+..+..
T Consensus        86 ~v~v~D~~tl~~-~~ti~~~-~~Gwglt--~dg~~L~vSd-gs~~l~~iDp~t~~~~~~I~V  142 (243)
T 3mbr_X           86 EGFVYDLATLTP-RARFRYP-GEGWALT--SDDSHLYMSD-GTAVIRKLDPDTLQQVGSIKV  142 (243)
T ss_dssp             EEEEEETTTTEE-EEEEECS-SCCCEEE--ECSSCEEEEC-SSSEEEEECTTTCCEEEEEEC
T ss_pred             EEEEEECCcCcE-EEEEeCC-CCceEEe--eCCCEEEEEC-CCCeEEEEeCCCCeEEEEEEE
Confidence            999999998764 6666632 2334444  5677777665 488999999999988888774

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.19  E-value=0.07  Score=56.50  Aligned_cols=115  Identities=8%  Similarity=-0.033  Sum_probs=79.5

Q ss_pred             CeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEE-eCC-CeEEEEECCCCCeeE
Q 005473          557 KVESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SAD-RTVRVWDTENPDYSL  633 (695)
Q Consensus       557 ~V~~v~fspdg~~L-aSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTg-s~D-gtIrvWDl~t~~~~l  633 (695)
                      ....+++.+.+..| ++-...+.|.+.+++.......+...-.....|+++|.+..|+.+ ..+ +.|..++++....  
T Consensus       117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~--  194 (349)
T 3v64_C          117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR--  194 (349)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC--
T ss_pred             CccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc--
Confidence            45788998755544 454556889999987654444444444567899999966655544 444 7899999875332  


Q ss_pred             EEE-ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 005473          634 RTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG  673 (695)
Q Consensus       634 ~~~-~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg  673 (695)
                      ..+ ...-.....|+|+|++..|+++-...+.|..+|+...
T Consensus       195 ~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~  235 (349)
T 3v64_C          195 RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS  235 (349)
T ss_dssp             EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            333 2223457899999988878878777889999998743

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.19  E-value=0.0025  Score=65.51  Aligned_cols=115  Identities=13%  Similarity=0.057  Sum_probs=82.5

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCe--EEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE
Q 005473          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI--TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V--~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~  635 (695)
                      ...+.|+ ++.++++.+.+|.|+++|+++++.+..+ -. ...  ..+++.. +++.+..-.++.+.+||..+.+. +.+
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~-~~t  131 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQR-ERT  131 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEE-EEE
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcE-EEE
Confidence            5688887 4677788888899999999999988777 22 233  3355543 34445555789999999998765 666


Q ss_pred             EecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec
Q 005473          636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKN  681 (695)
Q Consensus       636 ~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~  681 (695)
                      +... ..-+.++  +|+..|+++- .++.|+++|..+.+.+..+..
T Consensus       132 i~~~-~eGwGLt--~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V  173 (268)
T 3nok_A          132 TRYS-GEGWGLC--YWNGKLVRSD-GGTMLTFHEPDGFALVGAVQV  173 (268)
T ss_dssp             EECS-SCCCCEE--EETTEEEEEC-SSSEEEEECTTTCCEEEEEEC
T ss_pred             EeCC-CceeEEe--cCCCEEEEEC-CCCEEEEEcCCCCeEEEEEEe
Confidence            6642 2334444  5677677665 588999999999988888774

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.15  E-value=0.002  Score=73.33  Aligned_cols=105  Identities=11%  Similarity=0.110  Sum_probs=74.5

Q ss_pred             cEEEEECCC--CeE-EEEecccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCe----------eEEEEecCCCCe
Q 005473          578 KAVLWCTES--FTV-KSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDY----------SLRTFTGHSTTV  643 (695)
Q Consensus       578 ~V~IWDl~t--~~~-~~~l~~H~~~V~~v~~spdg~~LaTgs-~DgtIrvWDl~t~~~----------~l~~~~gh~~~V  643 (695)
                      .|.|.|..+  ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+.          ++..-..-....
T Consensus       255 ~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP  333 (595)
T 1fwx_A          255 GVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP  333 (595)
T ss_dssp             TEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCE
T ss_pred             cEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCc
Confidence            477777776  444 444432 23567899999999876665 578999999985421          122222233568


Q ss_pred             EEEEEecCCCeEEEEEeCCCcEEEEECCC----------CeEEEEEecCCC
Q 005473          644 MSLDFHPSKEDLLCSCDNNSEIRYWSINN----------GSCAGVFKNFFE  684 (695)
Q Consensus       644 ~sl~fspdg~~llaSgs~Dg~IriWDl~t----------g~~v~~~~~h~~  684 (695)
                      ..++|+|+| +++++.-.|+.|.+||+.+          ...+.++..|-.
T Consensus       334 ~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yq  383 (595)
T 1fwx_A          334 LHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ  383 (595)
T ss_dssp             EEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC
T ss_pred             ceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccc
Confidence            999999999 7888999999999999987          567777776644

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.15  E-value=0.075  Score=57.09  Aligned_cols=116  Identities=7%  Similarity=-0.054  Sum_probs=79.6

Q ss_pred             CeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEe-CC-CeEEEEECCCCCeeE
Q 005473          557 KVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-AD-RTVRVWDTENPDYSL  633 (695)
Q Consensus       557 ~V~~v~fspdg~~La-Sgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs-~D-gtIrvWDl~t~~~~l  633 (695)
                      ....+++.+.+..|+ +-...+.|.+.+++.......+...-.....|++.|.+..|+.+. .+ +.|..++++.... .
T Consensus       160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~  238 (386)
T 3v65_B          160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-R  238 (386)
T ss_dssp             CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-E
T ss_pred             CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc-E
Confidence            356788887655554 444567898988876544444444446678999999766665554 34 6888888875432 2


Q ss_pred             EEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 005473          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG  673 (695)
Q Consensus       634 ~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg  673 (695)
                      ......-.....|+|+|++..|+++-...+.|..+|+...
T Consensus       239 ~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (386)
T 3v65_B          239 IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS  278 (386)
T ss_dssp             EEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred             EEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            2222333457899999988878888778889999998743

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.09  E-value=0.016  Score=59.94  Aligned_cols=133  Identities=8%  Similarity=0.034  Sum_probs=84.3

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc--------------------cCCCeEEEEEcCCCCEEEEEe
Q 005473          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--------------------HTQWITDVRFSPSLSRLATSS  616 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~--------------------H~~~V~~v~~spdg~~LaTgs  616 (695)
                      ...+++|++++++++++..++.|..||..+++.. .+..                    ....+..|++.++...|+.+.
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d   98 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD   98 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence            3567899999998888888999999998765543 2210                    113578999998334555555


Q ss_pred             CCCeEEEEECCCCCeeEEEEec-----CCCCeEEEEEec-CCCeEEEEEeC-----------------CCcEEEEECCCC
Q 005473          617 ADRTVRVWDTENPDYSLRTFTG-----HSTTVMSLDFHP-SKEDLLCSCDN-----------------NSEIRYWSINNG  673 (695)
Q Consensus       617 ~DgtIrvWDl~t~~~~l~~~~g-----h~~~V~sl~fsp-dg~~llaSgs~-----------------Dg~IriWDl~tg  673 (695)
                      ..+.|.++|..++.  +..+..     .......+++.+ +|. ++++...                 ++.|..||..++
T Consensus        99 ~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  175 (322)
T 2fp8_A           99 CYYHLSVVGSEGGH--ATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK  175 (322)
T ss_dssp             TTTEEEEECTTCEE--CEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred             CCCCEEEEeCCCCE--EEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence            55668889977543  222221     113468899999 886 5545322                 367999998877


Q ss_pred             eEEEEEecCCCcEEEEEEeCCC
Q 005473          674 SCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       674 ~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +........ .....|+| +|+
T Consensus       176 ~~~~~~~~~-~~p~gia~-~~d  195 (322)
T 2fp8_A          176 ETTLLLKEL-HVPGGAEV-SAD  195 (322)
T ss_dssp             EEEEEEEEE-SCCCEEEE-CTT
T ss_pred             EEEEeccCC-ccCcceEE-CCC
Confidence            654333221 12245666 654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.04  E-value=0.014  Score=68.62  Aligned_cols=113  Identities=11%  Similarity=0.071  Sum_probs=73.5

Q ss_pred             EEEEEcCCCCEEEEEeCC-----CcEEEEECCCCeE--EEEec-ccCCCeEEEEEcCCCCEEEEEeC---CCeEEEEECC
Q 005473          559 ESCHFSPDGKLLATGGHD-----KKAVLWCTESFTV--KSTLE-EHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTE  627 (695)
Q Consensus       559 ~~v~fspdg~~LaSgs~D-----g~V~IWDl~t~~~--~~~l~-~H~~~V~~v~~spdg~~LaTgs~---DgtIrvWDl~  627 (695)
                      ..++|+|||+.|+....|     ..|++|++.++..  +..+. .+......+.|+||+++|+..+.   ...|+++|+.
T Consensus       224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~  303 (751)
T 2xe4_A          224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR  303 (751)
T ss_dssp             SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred             eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence            468899999887777665     3588888877642  23333 23345678999999998876552   3458999998


Q ss_pred             CCCeeE--EEE-ecCCCCeEEEEEecCCCeEEEEEeCC----CcEEEEECCC
Q 005473          628 NPDYSL--RTF-TGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINN  672 (695)
Q Consensus       628 t~~~~l--~~~-~gh~~~V~sl~fspdg~~llaSgs~D----g~IriWDl~t  672 (695)
                      ++....  ..+ .+..+...++.|+. |..|++....+    ..|.++|+.+
T Consensus       304 ~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          304 KGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             SCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             CCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            753212  333 33445567777654 55566666554    3677778765

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.01  E-value=0.28  Score=50.85  Aligned_cols=114  Identities=9%  Similarity=-0.034  Sum_probs=79.9

Q ss_pred             CeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCC--CeEEEEECCCCCeeE
Q 005473          557 KVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYSL  633 (695)
Q Consensus       557 ~V~~v~fspdg~~La-Sgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~D--gtIrvWDl~t~~~~l  633 (695)
                      ....+++.+.+..|+ +-..++.|.++|.+.......+.........+++.|.+..|+.+..+  +.|..++++...  .
T Consensus        78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~--~  155 (316)
T 1ijq_A           78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--I  155 (316)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--E
T ss_pred             CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC--e
Confidence            457899987555554 44567899999987654443444344567899999976666555443  688888887433  2


Q ss_pred             EEE-ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473          634 RTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (695)
Q Consensus       634 ~~~-~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t  672 (695)
                      ..+ ...-.....|+|++++..++++-...+.|..+|++.
T Consensus       156 ~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          156 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence            333 223356789999998887887877788999999874

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.98  E-value=0.071  Score=55.45  Aligned_cols=136  Identities=11%  Similarity=-0.014  Sum_probs=85.7

Q ss_pred             CCeEEEEEcCCCCEEEEE-eCCCcEEEEECCC----CeEEEEecccCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCC
Q 005473          556 SKVESCHFSPDGKLLATG-GHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENP  629 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSg-s~Dg~V~IWDl~t----~~~~~~l~~H~~~V~~v~~spdg~~L-aTgs~DgtIrvWDl~t~  629 (695)
                      ..+..++|++++..|+.+ ..++.|..+|+.+    ......+...-.....+++.+.++.| ++-..++.|.++|++..
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence            457899999876655554 4568999999876    22222333223456789998755544 55566789999999853


Q ss_pred             CeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC-CcEEEEECCCCeEEEEEe-cCCCcEEEEEEeCC
Q 005473          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAGVFK-NFFESFVSVRVVQP  694 (695)
Q Consensus       630 ~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D-g~IriWDl~tg~~v~~~~-~h~~~VtsVaf~sP  694 (695)
                      .. ...+.........++++|.+..++++.... +.|..++++ |+....+. ..-.....|+| +|
T Consensus       110 ~~-~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~-d~  173 (316)
T 1ijq_A          110 KR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITL-DL  173 (316)
T ss_dssp             SE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEE-ET
T ss_pred             ce-EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEE-ec
Confidence            32 223333345678999999777777666544 789999886 43333332 22345577877 65

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.98  E-value=0.016  Score=63.58  Aligned_cols=136  Identities=11%  Similarity=0.104  Sum_probs=87.1

Q ss_pred             CeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC-CC----eEEEEECCCCC
Q 005473          557 KVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR----TVRVWDTENPD  630 (695)
Q Consensus       557 ~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~-Dg----tIrvWDl~t~~  630 (695)
                      ....|+|+| ++..|+.+...+.|+++|+.++....... .......|+|++++++|+.+.. ++    .+.+++.....
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~  216 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF  216 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence            357899998 45667776666889999998766554443 4566889999999996666554 22    34444443221


Q ss_pred             eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec-CCCcEEEEEEeCCC
Q 005473          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKN-FFESFVSVRVVQPR  695 (695)
Q Consensus       631 ~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~-h~~~VtsVaf~sPd  695 (695)
                      .....+.. ......++++|++..++++-..++.|+.||...+.....+.. .......|+| +|+
T Consensus       217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~-~pd  280 (430)
T 3tc9_A          217 KVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQF-HPS  280 (430)
T ss_dssp             CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEE-CTT
T ss_pred             eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEE-cCC
Confidence            11122222 234677889995445777777789999999987765333322 2234578888 875

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.96  E-value=0.036  Score=58.77  Aligned_cols=136  Identities=9%  Similarity=0.018  Sum_probs=90.2

Q ss_pred             CCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCeeE
Q 005473          556 SKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSL  633 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs-~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~L-aTgs~DgtIrvWDl~t~~~~l  633 (695)
                      ..+..++|++.+..|+.+. ..+.|..+++.+......+.........+++.+.+..| ++-...+.|.+++++.... .
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~  151 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-K  151 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-E
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce-E
Confidence            3478999997666555554 57889999998765544444333456789998855544 5556678999999985432 3


Q ss_pred             EEEecCCCCeEEEEEecCCCeEEEEEeCC-CcEEEEECCCCeEEEEE-ecCCCcEEEEEEeCC
Q 005473          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAGVF-KNFFESFVSVRVVQP  694 (695)
Q Consensus       634 ~~~~gh~~~V~sl~fspdg~~llaSgs~D-g~IriWDl~tg~~v~~~-~~h~~~VtsVaf~sP  694 (695)
                      ..+.........++++|.+..++++-..+ +.|..++++.. ....+ ...-.....|+| +|
T Consensus       152 ~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGla~-d~  212 (349)
T 3v64_C          152 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGLTI-DY  212 (349)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESCCSSCSCEEEEEE-ET
T ss_pred             EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCcceEEE-eC
Confidence            33333345678999999877777776666 88999998643 33333 222334577777 65

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.93  E-value=0.013  Score=67.91  Aligned_cols=118  Identities=12%  Similarity=0.116  Sum_probs=79.8

Q ss_pred             EEcCCCC---EEEEEeCCCcEEEEECCCCeEEEEecccC------------CCe------------------------EE
Q 005473          562 HFSPDGK---LLATGGHDKKAVLWCTESFTVKSTLEEHT------------QWI------------------------TD  602 (695)
Q Consensus       562 ~fspdg~---~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~------------~~V------------------------~~  602 (695)
                      .+..+|+   +|+.++.+|.|+++|..+++.+..+....            .+|                        ..
T Consensus       306 d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~  385 (668)
T 1kv9_A          306 ELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHS  385 (668)
T ss_dssp             EEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSC
T ss_pred             EeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCc
Confidence            3334665   68899999999999999999875443211            000                        01


Q ss_pred             EEEcCCCCEEEEE------------------------------------eCCCeEEEEECCCCCeeEEEEecCCCCeEEE
Q 005473          603 VRFSPSLSRLATS------------------------------------SADRTVRVWDTENPDYSLRTFTGHSTTVMSL  646 (695)
Q Consensus       603 v~~spdg~~LaTg------------------------------------s~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl  646 (695)
                      ++++|+..+++..                                    ..+|.|+.||+.+++. +..+..+ ..+...
T Consensus       386 ~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~-~W~~~~~-~~~~~~  463 (668)
T 1kv9_A          386 MSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKA-AWKVPYP-THWNGG  463 (668)
T ss_dssp             CEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEE-EEEEEES-SSCCCC
T ss_pred             ceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcE-EEEccCC-CCCcCc
Confidence            5777776665542                                    1347899999999775 4444432 233333


Q ss_pred             EEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecC
Q 005473          647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF  682 (695)
Q Consensus       647 ~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h  682 (695)
                      .+...+. +++.++.|+.|++||.++|+.+..++..
T Consensus       464 ~~~t~gg-~vf~g~~dg~l~a~d~~tG~~l~~~~~~  498 (668)
T 1kv9_A          464 TLSTAGN-LVFQGTAAGQMHAYSADKGEALWQFEAQ  498 (668)
T ss_dssp             EEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             eeEeCCC-EEEEECCcccchhhhhhcChhheEecCC
Confidence            4445555 5667899999999999999999988754

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=96.92  E-value=0.013  Score=61.92  Aligned_cols=109  Identities=7%  Similarity=-0.009  Sum_probs=75.6

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEecccC---------CCeE-EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 005473          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT---------QWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (695)
Q Consensus       567 g~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~---------~~V~-~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~  636 (695)
                      +..|++++.++.|..||..+++.+..+....         ..+. .+..  ++..|+.++.++.|..+|.++++. +..+
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~-~W~~  129 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTV-AWQT  129 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCE-EEEE
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCE-EEEE
Confidence            5678888889999999999999887765421         2222 2222  456888888999999999998875 4444


Q ss_pred             ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec
Q 005473          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKN  681 (695)
Q Consensus       637 ~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~  681 (695)
                      ...........+. + . .++.++.++.|+.+|..+|+.+..+..
T Consensus       130 ~~~~~~~~~p~~~-~-~-~v~v~~~~g~l~~~d~~tG~~~W~~~~  171 (376)
T 3q7m_A          130 KVAGEALSRPVVS-D-G-LVLIHTSNGQLQALNEADGAVKWTVNL  171 (376)
T ss_dssp             ECSSCCCSCCEEE-T-T-EEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             eCCCceEcCCEEE-C-C-EEEEEcCCCeEEEEECCCCcEEEEEeC
Confidence            4332222222333 3 3 455677899999999999998877664

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.91  E-value=0.06  Score=54.89  Aligned_cols=145  Identities=11%  Similarity=0.069  Sum_probs=95.1

Q ss_pred             EEecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEecc-cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 005473          549 QLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (695)
Q Consensus       549 ~~l~~H~~~V~~v~fspdg~~L-aSgs~Dg~V~IWDl~t~~~~~~l~~-H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl  626 (695)
                      +.+.+-.+.+..++|+|++..| ++...++.|...|.. ++.++.+.- -......|++.+++.++++.-.++.+.++++
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            4566666679999999986654 456778889999998 777777632 1256788999988876666556788999988


Q ss_pred             CCCCe--eEEEEe------cCCCCeEEEEEecCCCeEEEEEeCCC-cEEEEECC-CCeEEEEEe-------cCCCcEEEE
Q 005473          627 ENPDY--SLRTFT------GHSTTVMSLDFHPSKEDLLCSCDNNS-EIRYWSIN-NGSCAGVFK-------NFFESFVSV  689 (695)
Q Consensus       627 ~t~~~--~l~~~~------gh~~~V~sl~fspdg~~llaSgs~Dg-~IriWDl~-tg~~v~~~~-------~h~~~VtsV  689 (695)
                      .....  .+....      ........|+|+|++..++++...+. .|+.|+-. ....+..+.       .+...+.+|
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            76542  122221      12344689999999887887766655 56666511 111222221       133456788


Q ss_pred             EEeCCC
Q 005473          690 RVVQPR  695 (695)
Q Consensus       690 af~sPd  695 (695)
                      +| +|.
T Consensus       179 ~~-dp~  183 (255)
T 3qqz_A          179 EF-NQQ  183 (255)
T ss_dssp             EE-ETT
T ss_pred             EE-cCC
Confidence            88 774

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.90  E-value=0.2  Score=54.07  Aligned_cols=137  Identities=13%  Similarity=0.058  Sum_probs=94.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCe
Q 005473          555 TSKVESCHFSPDGKLLATGGH--DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDY  631 (695)
Q Consensus       555 ~~~V~~v~fspdg~~LaSgs~--Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs-~DgtIrvWDl~t~~~  631 (695)
                      -.....|++.|.+.+|+.+..  .+.|...+++.......+...-.....|++++++..|+.+. ....|..+|++....
T Consensus       201 ~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~  280 (400)
T 3p5b_L          201 GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR  280 (400)
T ss_dssp             SCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC
T ss_pred             CCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc
Confidence            344789999997776666653  37888889876544444444446788999998877776664 467899999975432


Q ss_pred             eEEEEec--CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          632 SLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       632 ~l~~~~g--h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                       ......  .-.....|++.  +..++++-...+.|..+|..+|+.+.++.........|+++||
T Consensus       281 -~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v~~~  342 (400)
T 3p5b_L          281 -KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHN  342 (400)
T ss_dssp             -EEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEEESG
T ss_pred             -EEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEEEee
Confidence             222222  23456677773  4467778788899999998888888887765555677765465

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.90  E-value=0.033  Score=59.96  Aligned_cols=137  Identities=9%  Similarity=-0.006  Sum_probs=90.0

Q ss_pred             CCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCeeE
Q 005473          556 SKVESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSL  633 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSg-s~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~L-aTgs~DgtIrvWDl~t~~~~l  633 (695)
                      ..+..++|++.+..|+.+ ...+.|..+++........+.........+++.+.+..| ++-...+.|.+++++.... .
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~-~  194 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-K  194 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC-E
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce-E
Confidence            347899999766555544 457889999998766544444333456688888855554 5555678899999875432 3


Q ss_pred             EEEecCCCCeEEEEEecCCCeEEEEEeCC-CcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       634 ~~~~gh~~~V~sl~fspdg~~llaSgs~D-g~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      ..+.........|+++|.+..++++-..+ +.|..++++.......+...-.....|+| +|
T Consensus       195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlav-d~  255 (386)
T 3v65_B          195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTI-DY  255 (386)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEE-EG
T ss_pred             EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEE-eC
Confidence            33333345678999999888777776666 88999998743332222233344577777 64

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.88  E-value=0.022  Score=62.31  Aligned_cols=116  Identities=15%  Similarity=0.082  Sum_probs=76.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCC-C----cEEEEECCCCeEE--EEecccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEE
Q 005473          554 STSKVESCHFSPDGKLLATGGHD-K----KAVLWCTESFTVK--STLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD  625 (695)
Q Consensus       554 H~~~V~~v~fspdg~~LaSgs~D-g----~V~IWDl~t~~~~--~~l~~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWD  625 (695)
                      .......|+|+++|++|+.+... +    .+.+++. .+...  ..+.. ......++++| ++.++++-..++.|+.||
T Consensus       177 ~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~  254 (430)
T 3tc9_A          177 GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYD  254 (430)
T ss_dssp             CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEE
T ss_pred             CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEE
Confidence            34457899999999977666642 2    2333443 22221  22322 23456888999 666666666788999999


Q ss_pred             CCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 005473          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (695)
Q Consensus       626 l~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~  671 (695)
                      ...+........+.......++|+|+|+.++++-...+.|+.||..
T Consensus       255 ~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          255 FTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             TTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             CCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            9865431111112224578999999999788787788999998875

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.84  E-value=0.23  Score=50.51  Aligned_cols=123  Identities=11%  Similarity=0.147  Sum_probs=82.2

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE---EEEec------ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 005473          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTLE------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~---~~~l~------~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~  627 (695)
                      -...|++.+++.++++.-.++.+.++++.....   +....      .+......|+|+|.+..|+++.......||.++
T Consensus        71 D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~  150 (255)
T 3qqz_A           71 DLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN  150 (255)
T ss_dssp             SEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred             ChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence            477889999998777766788899998765432   22221      124456899999998777776654444444443


Q ss_pred             C--CCeeEEEEe-------cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473          628 N--PDYSLRTFT-------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  680 (695)
Q Consensus       628 t--~~~~l~~~~-------gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~  680 (695)
                      .  ....+..+.       .+...+.+++++|....+++.......|.++|.. |+.+..+.
T Consensus       151 g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~  211 (255)
T 3qqz_A          151 GLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMS  211 (255)
T ss_dssp             STTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEE
T ss_pred             ccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEE
Confidence            1  111122221       1234578999999988899899999999999965 66666655

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.83  E-value=0.19  Score=52.59  Aligned_cols=115  Identities=8%  Similarity=-0.036  Sum_probs=79.1

Q ss_pred             CeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCCeeE
Q 005473          557 KVESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSL  633 (695)
Q Consensus       557 ~V~~v~fspdg~~L-aSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~--DgtIrvWDl~t~~~~l  633 (695)
                      ....+++.+.+..| ++-...+.|.+++++.......+.........|++.|.+..|+.+..  .+.|..++++.... .
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~  158 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-F  158 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-E
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-E
Confidence            45688888755544 44455788999998765443334344566789999997666655553  57888888874332 2


Q ss_pred             EEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (695)
Q Consensus       634 ~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t  672 (695)
                      ......-.....|+|++++..++++-...+.|..+|++.
T Consensus       159 ~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG  197 (318)
T 3sov_A          159 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG  197 (318)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence            222222345689999998887887877889999999874

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.76  E-value=0.51  Score=50.81  Aligned_cols=119  Identities=9%  Similarity=-0.039  Sum_probs=83.2

Q ss_pred             CCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCC
Q 005473          554 STSKVESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPD  630 (695)
Q Consensus       554 H~~~V~~v~fspdg~~L-aSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~--DgtIrvWDl~t~~  630 (695)
                      .......+++.+.+..| ++-...+.|.+.|++.......+...-.....|++.|.+.+|+....  .+.|...+++...
T Consensus       157 ~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~  236 (400)
T 3p5b_L          157 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD  236 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS
T ss_pred             CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc
Confidence            33457889998855544 44455788999999866555445444456889999997666655543  3689999987543


Q ss_pred             eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 005473          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG  673 (695)
Q Consensus       631 ~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg  673 (695)
                      . .......-.....|+|++++..|+++-...+.|..+|++..
T Consensus       237 ~-~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (400)
T 3p5b_L          237 I-YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  278 (400)
T ss_dssp             C-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             c-EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence            2 22233333567899999988878877777889999998743

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.76  E-value=0.03  Score=61.07  Aligned_cols=110  Identities=17%  Similarity=0.183  Sum_probs=74.4

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe------------EEEEecc------cCCCeEEEEEcCC---CCEEEEE
Q 005473          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT------------VKSTLEE------HTQWITDVRFSPS---LSRLATS  615 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~------------~~~~l~~------H~~~V~~v~~spd---g~~LaTg  615 (695)
                      .|..+..+|+|++||..+ +..|.|..+..+.            ..+.+.-      ....|..+.|+|-   +..|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            477899999999999986 5679998886221            1122221      2467999999994   6789999


Q ss_pred             eCCCeEEEEECCCC-CeeEEEEe---------cCCCCeEEEEEecCCCeEEEE-EeCCCcEEEE
Q 005473          616 SADRTVRVWDTENP-DYSLRTFT---------GHSTTVMSLDFHPSKEDLLCS-CDNNSEIRYW  668 (695)
Q Consensus       616 s~DgtIrvWDl~t~-~~~l~~~~---------gh~~~V~sl~fspdg~~llaS-gs~Dg~IriW  668 (695)
                      ..|++||+||+... ..+. ++.         .....|.+++|..++=.|++. .+.+|.|+-.
T Consensus       146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            99999999999852 2223 332         223567888888865444432 2355666544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.75  E-value=0.079  Score=56.03  Aligned_cols=113  Identities=6%  Similarity=0.060  Sum_probs=82.4

Q ss_pred             eEEEEE---cCCCCEEEEEe-------------CCCcEEEEECC---CCeEEEEec--cc-----------CCCeEEEEE
Q 005473          558 VESCHF---SPDGKLLATGG-------------HDKKAVLWCTE---SFTVKSTLE--EH-----------TQWITDVRF  605 (695)
Q Consensus       558 V~~v~f---spdg~~LaSgs-------------~Dg~V~IWDl~---t~~~~~~l~--~H-----------~~~V~~v~~  605 (695)
                      +..|.|   .++++++++..             .+..|..||+.   +++.+....  ..           ...+.+|+.
T Consensus        65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav  144 (334)
T 2p9w_A           65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ  144 (334)
T ss_dssp             EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred             eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence            578999   68888877644             26779999999   777765543  21           134789999


Q ss_pred             cCCCCEEEEEeCC-CeEEEEECCCCCeeEEEEe-cC-----CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 005473          606 SPSLSRLATSSAD-RTVRVWDTENPDYSLRTFT-GH-----STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG  673 (695)
Q Consensus       606 spdg~~LaTgs~D-gtIrvWDl~t~~~~l~~~~-gh-----~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg  673 (695)
                      .++|+..++++.. +.|..+|.+...  +..+. ..     .-..+.|+++|+|..|++..+ +|.|..+|+++.
T Consensus       145 D~~GnaYVt~s~~~~~I~rV~pdG~~--~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~p  216 (334)
T 2p9w_A          145 DRDGNSYVAFALGMPAIARVSADGKT--VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKP  216 (334)
T ss_dssp             CTTSCEEEEEEESSCEEEEECTTSCC--EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSS
T ss_pred             CCCCCEEEeCCCCCCeEEEEeCCCCE--EeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCC
Confidence            9999999999988 888888877532  23221 11     123568999999987776666 999999998753

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.75  E-value=0.085  Score=54.22  Aligned_cols=125  Identities=10%  Similarity=0.042  Sum_probs=79.5

Q ss_pred             eeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCC-C-eEE
Q 005473          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R-TVR  622 (695)
Q Consensus       545 ~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~D-g-tIr  622 (695)
                      .+.+..+... .....++|+++++++++-..++.|..||..+. ....+. ....+..+++.++++++++.... + .|.
T Consensus        22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~   98 (306)
T 2p4o_A           22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVV   98 (306)
T ss_dssp             EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEE
Confidence            3445555443 45789999999997777667899999998753 333332 24568899999999876665433 2 477


Q ss_pred             EEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 005473          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG  673 (695)
Q Consensus       623 vWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg  673 (695)
                      .+|..+++.....-.........+++.++ ..++++...++.|+++|..++
T Consensus        99 ~~d~~~g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~  148 (306)
T 2p4o_A           99 SLVKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQP  148 (306)
T ss_dssp             EEECTTSCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTT
T ss_pred             EEcCCCCeEEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCC
Confidence            77877765421111112223345555444 346656556889999998764

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.73  E-value=0.17  Score=52.89  Aligned_cols=137  Identities=7%  Similarity=0.013  Sum_probs=89.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCCe
Q 005473          555 TSKVESCHFSPDGKLLATGGH--DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDY  631 (695)
Q Consensus       555 ~~~V~~v~fspdg~~LaSgs~--Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTg-s~DgtIrvWDl~t~~~  631 (695)
                      ......+++.|.+.+|+.+..  .+.|...+++.......+...-.....|+|++++..|+.+ +..+.|..+|++....
T Consensus       121 ~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~  200 (318)
T 3sov_A          121 LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR  200 (318)
T ss_dssp             CSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce
Confidence            345688999987766666653  5778888886543333333333456899999976666555 4567899999975332


Q ss_pred             eEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       632 ~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                       .....+.......+++.  +..++.+-...+.|..+|..+|+.+..+.........|+.+||
T Consensus       201 -~~~~~~~~~~P~glav~--~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~P~~i~v~~~  260 (318)
T 3sov_A          201 -QAVVKGSLPHPFALTLF--EDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQ  260 (318)
T ss_dssp             -EEEECSCCSCEEEEEEE--TTEEEEEETTTTEEEEEETTTCCSCEEEECCCSSCCCEEEECG
T ss_pred             -EEEecCCCCCceEEEEe--CCEEEEEecCCCeEEEEECCCCCceEEEeCCCCCCcEEEEecc
Confidence             22233334566778875  3457777777899999999888877777644333445554354

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.69  E-value=0.012  Score=67.09  Aligned_cols=115  Identities=12%  Similarity=0.009  Sum_probs=79.0

Q ss_pred             CCCC---EEEEEeCCCcEEEEECCCCeEEEEecccC-------------CCe--------------------------EE
Q 005473          565 PDGK---LLATGGHDKKAVLWCTESFTVKSTLEEHT-------------QWI--------------------------TD  602 (695)
Q Consensus       565 pdg~---~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~-------------~~V--------------------------~~  602 (695)
                      .+|+   +++.++.+|.|+++|..+++.+..+....             .+|                          ..
T Consensus       311 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~  390 (571)
T 2ad6_A          311 VNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGV  390 (571)
T ss_dssp             ETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred             cCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCC
Confidence            4674   67788889999999999999887664221             111                          13


Q ss_pred             EEEcCCCCEEEEEe-------------------------------------CCCeEEEEECCCCCeeEEEEecCCCCeEE
Q 005473          603 VRFSPSLSRLATSS-------------------------------------ADRTVRVWDTENPDYSLRTFTGHSTTVMS  645 (695)
Q Consensus       603 v~~spdg~~LaTgs-------------------------------------~DgtIrvWDl~t~~~~l~~~~gh~~~V~s  645 (695)
                      ++|+|+..+|++.+                                     .++.|..||+.+++. +..+... ..+.+
T Consensus       391 ~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~-~W~~~~~-~~~~~  468 (571)
T 2ad6_A          391 DSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKA-KWTKWEK-FAAWG  468 (571)
T ss_dssp             CEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCE-EEEEEES-SCCCS
T ss_pred             ceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCE-EEEecCC-CCccc
Confidence            57788777776653                                     357899999998875 4444322 22333


Q ss_pred             EEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecC
Q 005473          646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF  682 (695)
Q Consensus       646 l~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h  682 (695)
                      ..+...+. +++.++.||.|++||.++|+++..+...
T Consensus       469 ~~~~t~gg-~v~~g~~dg~l~a~D~~tG~~lw~~~~~  504 (571)
T 2ad6_A          469 GTLYTKGG-LVWYATLDGYLKALDNKDGKELWNFKMP  504 (571)
T ss_dssp             BCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             eeEEECCC-EEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence            33333445 4456889999999999999999988743

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.66  E-value=0.26  Score=57.69  Aligned_cols=131  Identities=12%  Similarity=0.042  Sum_probs=89.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc--------cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 005473          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--------HTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (695)
Q Consensus       555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~--------H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl  626 (695)
                      ...|.++...++|++. .|+.++-|.+||..++........        ....|.++...+++.+|..|+.++.|.+||.
T Consensus       356 ~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~  434 (795)
T 4a2l_A          356 DNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHR  434 (795)
T ss_dssp             CSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEET
T ss_pred             CCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeC
Confidence            3469999999888744 567777799999887665433211        2367999999888875777888788999999


Q ss_pred             CCCCeeEEEEe-----cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec------CCCcEEEEEE
Q 005473          627 ENPDYSLRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKN------FFESFVSVRV  691 (695)
Q Consensus       627 ~t~~~~l~~~~-----gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~------h~~~VtsVaf  691 (695)
                      .++..  ..+.     .+...|.++...++|. +++ |+. +.|.+||..+++.......      +...|.+|..
T Consensus       435 ~~~~~--~~~~~~~~~l~~~~v~~i~~d~~g~-lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  505 (795)
T 4a2l_A          435 NSGQV--ENFNQRNSQLVNENVYAILPDGEGN-LWL-GTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFR  505 (795)
T ss_dssp             TTCCE--EEECTTTSCCSCSCEEEEEECSSSC-EEE-EES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEE
T ss_pred             CCCcE--EEeecCCCCcCCCeeEEEEECCCCC-EEE-Eec-CceeEEeCCCCeEEEccccccccccCCceEEEEEE
Confidence            87653  3333     1345799999888887 443 333 4588999887765433211      2356777765

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.66  E-value=0.12  Score=53.04  Aligned_cols=114  Identities=18%  Similarity=0.152  Sum_probs=71.2

Q ss_pred             CeEEEEEcCCCCEEEEEeCC-C-cEEEEECCCCeEEEEec-ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE
Q 005473          557 KVESCHFSPDGKLLATGGHD-K-KAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~D-g-~V~IWDl~t~~~~~~l~-~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l  633 (695)
                      .+.++++.++|+++++.... + .|..+|..+++...... ........++..+++..+++-..++.|+++|...+...+
T Consensus        73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v  152 (306)
T 2p4o_A           73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSI  152 (306)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeE
Confidence            47899999999966655432 2 46677877776543332 122334455555555445555568899999987643212


Q ss_pred             EEEec---------CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473          634 RTFTG---------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (695)
Q Consensus       634 ~~~~g---------h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t  672 (695)
                      ....+         .-.....+  ++++..++++-...+.|++||+..
T Consensus       153 ~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~  198 (306)
T 2p4o_A          153 WLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDS  198 (306)
T ss_dssp             EEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCT
T ss_pred             EEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCC
Confidence            21111         11234455  888888888888889999999874

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.53  E-value=0.034  Score=64.42  Aligned_cols=104  Identities=8%  Similarity=0.070  Sum_probs=73.9

Q ss_pred             CCcEEEEECCCCeEEEEecccC-------------------------------CCeEEEEEcCCCCEEEEEeCCC-----
Q 005473          576 DKKAVLWCTESFTVKSTLEEHT-------------------------------QWITDVRFSPSLSRLATSSADR-----  619 (695)
Q Consensus       576 Dg~V~IWDl~t~~~~~~l~~H~-------------------------------~~V~~v~~spdg~~LaTgs~Dg-----  619 (695)
                      ++.|+.+|.++++.+..+....                               .....+++.|+..+++.++.++     
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~  256 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence            5899999999999988774210                               0112468888888888887766     


Q ss_pred             --------------eEEEEECCCCCeeEEEEec--CC-------CCeEEEEEecCCC--eEEEEEeCCCcEEEEECCCCe
Q 005473          620 --------------TVRVWDTENPDYSLRTFTG--HS-------TTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNGS  674 (695)
Q Consensus       620 --------------tIrvWDl~t~~~~l~~~~g--h~-------~~V~sl~fspdg~--~llaSgs~Dg~IriWDl~tg~  674 (695)
                                    .|..+|+++++. +..+..  |.       ..+....+..+|+  .+++.++.+|.|+++|..+|+
T Consensus       257 ~~~~~~~gd~l~~~~v~AlD~~tG~~-~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  335 (668)
T 1kv9_A          257 EVRSPGGGDNLYLSSILAIRPDTGKL-AWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK  335 (668)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCE-EEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             CCCCCCCCCceeeeeEEEEcCCCCce-eeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence                          499999999875 555442  32       2233334444654  357789999999999999999


Q ss_pred             EEEEEe
Q 005473          675 CAGVFK  680 (695)
Q Consensus       675 ~v~~~~  680 (695)
                      .+..++
T Consensus       336 ~l~~~~  341 (668)
T 1kv9_A          336 LISAEK  341 (668)
T ss_dssp             EEEEEE
T ss_pred             Eecccc
Confidence            986554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.53  E-value=0.078  Score=58.07  Aligned_cols=116  Identities=10%  Similarity=0.118  Sum_probs=72.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCC----Cc-EEEEECCCCeE-EEEecccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEC
Q 005473          554 STSKVESCHFSPDGKLLATGGHD----KK-AVLWCTESFTV-KSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDT  626 (695)
Q Consensus       554 H~~~V~~v~fspdg~~LaSgs~D----g~-V~IWDl~t~~~-~~~l~~H~~~V~~v~~sp-dg~~LaTgs~DgtIrvWDl  626 (695)
                      ......+++|+++|+ |+.+...    .. +...+...... ...+. .-.....++++| ++.++++-..++.|+.+|.
T Consensus       180 ~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~  257 (433)
T 4hw6_A          180 NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDP  257 (433)
T ss_dssp             CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECT
T ss_pred             CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEEC
Confidence            344588999999999 5554432    12 33333222111 11221 234456788999 6666666667789999999


Q ss_pred             CCCCeeEEEEe-cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 005473          627 ENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (695)
Q Consensus       627 ~t~~~~l~~~~-gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~  671 (695)
                      .++......+. +.......++|+|++..|+++-...+.|+.+|+.
T Consensus       258 ~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          258 ATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             TTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             CCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            86654112222 2223345799999998788787788999998875

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.42  E-value=0.52  Score=55.65  Aligned_cols=138  Identities=14%  Similarity=0.065  Sum_probs=91.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeC-C-CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCC
Q 005473          554 STSKVESCHFSPDGKLLATGGH-D-KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPD  630 (695)
Q Consensus       554 H~~~V~~v~fspdg~~LaSgs~-D-g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTg-s~DgtIrvWDl~t~~  630 (695)
                      .-.....|++.|.+.+|+.+.. + +.|.+.+++.......+...-.....|++.+.+..|+.+ .....|.++|++...
T Consensus       512 ~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~  591 (791)
T 3m0c_C          512 NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  591 (791)
T ss_dssp             TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence            3345789999998776766653 2 678888987655544444444678899999876666665 446789999997544


Q ss_pred             eeEEEEec--CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          631 YSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       631 ~~l~~~~g--h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      . ...+..  .-.....|++.  +..|+++-...+.|...|..+|+.+.++.........|+++||
T Consensus       592 ~-~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~~l~~P~~i~v~h~  654 (791)
T 3m0c_C          592 R-KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHN  654 (791)
T ss_dssp             C-EEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESG
T ss_pred             e-EEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEeecCCCCceeEeeecc
Confidence            3 233332  22345677764  3467778778899999998888777777644433345554354

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.35  E-value=0.41  Score=56.01  Aligned_cols=128  Identities=9%  Similarity=-0.003  Sum_probs=86.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec----ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 005473          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (695)
Q Consensus       555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~----~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~  630 (695)
                      ...|.++...++|++|..|+.++-|.+||..+++......    .+...|.++...+++.+.+.. . +.|.+||..++.
T Consensus       405 ~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~  482 (795)
T 4a2l_A          405 SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRS  482 (795)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTE
T ss_pred             CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCe
Confidence            3569999999999867777877779999998876543322    134679999988887755544 4 458899988754


Q ss_pred             eeEEEEec-------CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe-------cCCCcEEEEEE
Q 005473          631 YSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------NFFESFVSVRV  691 (695)
Q Consensus       631 ~~l~~~~g-------h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~-------~h~~~VtsVaf  691 (695)
                      .  ..+..       ....|.++...++|. +++. +. +-|.+||..+++.  .+.       .+...|.+|..
T Consensus       483 ~--~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWig-t~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~  550 (795)
T 4a2l_A          483 F--TTIEKEKDGTPVVSKQITTLFRDSHKR-LWIG-GE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYE  550 (795)
T ss_dssp             E--EECCBCTTCCBCCCCCEEEEEECTTCC-EEEE-ES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEE
T ss_pred             E--EEccccccccccCCceEEEEEECCCCC-EEEE-eC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEE
Confidence            3  33321       235789999998887 4433 33 4588899887765  332       12346777765

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.27  E-value=0.037  Score=63.15  Aligned_cols=115  Identities=10%  Similarity=0.070  Sum_probs=76.4

Q ss_pred             CCCC---EEEEEeCCCcEEEEECCCCeEEEEecccC-------------CCe----------------------------
Q 005473          565 PDGK---LLATGGHDKKAVLWCTESFTVKSTLEEHT-------------QWI----------------------------  600 (695)
Q Consensus       565 pdg~---~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~-------------~~V----------------------------  600 (695)
                      .+|+   +|+.++.+|.|+++|.++++.+..+....             .++                            
T Consensus       331 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~G  410 (582)
T 1flg_A          331 KDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLG  410 (582)
T ss_dssp             SSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTC
T ss_pred             CCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCcc
Confidence            4674   78889999999999999999887664321             000                            


Q ss_pred             ----EEEEEcCCCCEEEEEe---------------------------------CCCeEEEEECCCCCeeEEEEecCCCCe
Q 005473          601 ----TDVRFSPSLSRLATSS---------------------------------ADRTVRVWDTENPDYSLRTFTGHSTTV  643 (695)
Q Consensus       601 ----~~v~~spdg~~LaTgs---------------------------------~DgtIrvWDl~t~~~~l~~~~gh~~~V  643 (695)
                          ..++++|+..++++..                                 .+|.|..||+.+++. +.....+. .+
T Consensus       411 g~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~-~W~~~~~~-~~  488 (582)
T 1flg_A          411 GKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKV-VWEHKEHL-PL  488 (582)
T ss_dssp             SSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCE-EEEEEESS-CC
T ss_pred             ccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCE-EEEecCCC-CC
Confidence                1245666544544432                                 267899999999875 44433222 22


Q ss_pred             EEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecC
Q 005473          644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF  682 (695)
Q Consensus       644 ~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h  682 (695)
                      ..-.+...+. +++.|+.|+.|+.||.++|+.+..++..
T Consensus       489 ~~g~~~tagg-lvf~g~~dg~l~A~D~~tG~~lW~~~~~  526 (582)
T 1flg_A          489 WAGVLATAGN-LVFTGTGDGYFKAFDAKSGKELWKFQTG  526 (582)
T ss_dssp             CSCCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cccceEeCCC-EEEEECCCCcEEEEECCCCCEEEEecCC
Confidence            2211222344 5567899999999999999999988854

>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A

Probab=96.22  E-value=0.0039  Score=68.42  Aligned_cols=14  Identities=14%  Similarity=0.418  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHhhhh
Q 005473           52 LFEWWSVFWDIFIA   65 (695)
Q Consensus        52 L~EWW~iFwDif~A   65 (695)
                      ..++|.++.+.+..
T Consensus       336 ~~~~~~~~~~~~~~  349 (449)
T 3iot_A          336 MSAFWYAVRTAVIN  349 (449)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            34556666665544

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.18  E-value=0.21  Score=59.09  Aligned_cols=138  Identities=10%  Similarity=-0.016  Sum_probs=87.4

Q ss_pred             CCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCC----eEEEEecccCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCC
Q 005473          555 TSKVESCHFSPDGKLLATG-GHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTEN  628 (695)
Q Consensus       555 ~~~V~~v~fspdg~~LaSg-s~Dg~V~IWDl~t~----~~~~~l~~H~~~V~~v~~spdg~~L-aTgs~DgtIrvWDl~t  628 (695)
                      ...+..|+|.+....|+.+ ...+.|+.+++...    .....+.........|++.+.++.| ++-...+.|.+.+++.
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence            4557899999865555544 45678999998753    2333444344567789998876555 5555678999999985


Q ss_pred             CCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC-CcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       629 ~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D-g~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      ... ...+.........|+++|.+..|+++-..+ +.|.+.++........+...-.....|++ +|
T Consensus       503 ~~~-~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLav-D~  567 (791)
T 3m0c_C          503 VKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITL-DL  567 (791)
T ss_dssp             SSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEE-ET
T ss_pred             CeE-EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEE-ec
Confidence            432 233333445689999999877677665433 78999998744333333333345577776 54

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.18  E-value=0.21  Score=54.52  Aligned_cols=129  Identities=13%  Similarity=0.099  Sum_probs=85.5

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccc----CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-------
Q 005473          562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH----TQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-------  630 (695)
Q Consensus       562 ~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H----~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~-------  630 (695)
                      ..+.+|..|+.+- ++.||..++......+.+.-.    -+.|..+..+|+|.+||..+ +..|.|-.+..+.       
T Consensus        27 ~~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~  104 (452)
T 3pbp_A           27 FSSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVS  104 (452)
T ss_dssp             EEETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHH
T ss_pred             EEEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccc
Confidence            3445677777665 588998888744444444322    22588899999999999885 6689999887322       


Q ss_pred             ----eeEEEEec------CCCCeEEEEEecCCCe--EEEEEeCCCcEEEEECCCC--eEEEEEe---------cCCCcEE
Q 005473          631 ----YSLRTFTG------HSTTVMSLDFHPSKED--LLCSCDNNSEIRYWSINNG--SCAGVFK---------NFFESFV  687 (695)
Q Consensus       631 ----~~l~~~~g------h~~~V~sl~fspdg~~--llaSgs~Dg~IriWDl~tg--~~v~~~~---------~h~~~Vt  687 (695)
                          ..++++.-      ....|..+.|||-+..  -|++-..|+.||+||+...  ++. .++         .....|.
T Consensus       105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~  183 (452)
T 3pbp_A          105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDIT  183 (452)
T ss_dssp             HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEE
T ss_pred             cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEE
Confidence                11233332      2467999999996532  4556777999999999852  233 332         2236778


Q ss_pred             EEEEeCC
Q 005473          688 SVRVVQP  694 (695)
Q Consensus       688 sVaf~sP  694 (695)
                      +++| .+
T Consensus       184 S~~F-g~  189 (452)
T 3pbp_A          184 DLEF-SK  189 (452)
T ss_dssp             EEEE-CT
T ss_pred             EEEE-cC
Confidence            8888 54

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.18  E-value=0.31  Score=51.93  Aligned_cols=124  Identities=14%  Similarity=0.172  Sum_probs=88.7

Q ss_pred             CCeEEEEE--cCC-CC-EEEEEeCCCcEEEEECC-------CCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 005473          556 SKVESCHF--SPD-GK-LLATGGHDKKAVLWCTE-------SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (695)
Q Consensus       556 ~~V~~v~f--spd-g~-~LaSgs~Dg~V~IWDl~-------t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvW  624 (695)
                      ..+..+++  ++. ++ ++++...+|.+..|++.       +.+.+++|.- .+.+..|.+.+....|+.+-.|..|+.+
T Consensus       128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~  206 (355)
T 3amr_A          128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKF  206 (355)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEE
T ss_pred             CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEE
Confidence            34566666  664 44 68888889999999882       3456677654 4678899999988999999999888888


Q ss_pred             ECCCC----CeeEEEEe-cC-CCCeEEEEE--ecCCC-eEEEEEeCCCcEEEEECC-CCeEEEEEe
Q 005473          625 DTENP----DYSLRTFT-GH-STTVMSLDF--HPSKE-DLLCSCDNNSEIRYWSIN-NGSCAGVFK  680 (695)
Q Consensus       625 Dl~t~----~~~l~~~~-gh-~~~V~sl~f--spdg~-~llaSgs~Dg~IriWDl~-tg~~v~~~~  680 (695)
                      |.+..    ...+..+. ++ ...+..|++  .+++. ++|+++-.+.++.+||.. +.+.+..|.
T Consensus       207 da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          207 SAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             ECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             eCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            86522    12243332 22 246788887  55666 688787678899999996 678888875

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.13  E-value=0.069  Score=56.67  Aligned_cols=99  Identities=13%  Similarity=0.096  Sum_probs=60.8

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE--EEec---ccCCCeEEEEEcCC---CCEEEEEeC-C-----CeEE
Q 005473          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLE---EHTQWITDVRFSPS---LSRLATSSA-D-----RTVR  622 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~--~~l~---~H~~~V~~v~~spd---g~~LaTgs~-D-----gtIr  622 (695)
                      .-..++|.|+|++++ +..++.|++++  +++..  ..+.   ........|+|+|+   +..|+.+.. +     ..|.
T Consensus        32 ~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            467999999999554 46679999998  34422  2221   12356789999998   555544433 2     5788


Q ss_pred             EEECCCCCe-----eEEEEe---cCCCCeEEEEEecCCCeEEEEE
Q 005473          623 VWDTENPDY-----SLRTFT---GHSTTVMSLDFHPSKEDLLCSC  659 (695)
Q Consensus       623 vWDl~t~~~-----~l~~~~---gh~~~V~sl~fspdg~~llaSg  659 (695)
                      .|+......     .+..+.   +.......++|.|||. |+++.
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~  152 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTT  152 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEEC
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEE
Confidence            888774321     112232   1112346899999996 55453

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.03  E-value=0.045  Score=62.66  Aligned_cols=115  Identities=13%  Similarity=0.073  Sum_probs=75.1

Q ss_pred             CCC---CEEEEEeCCCcEEEEECCCCeEEEEecccC-------------CCe--------------------------EE
Q 005473          565 PDG---KLLATGGHDKKAVLWCTESFTVKSTLEEHT-------------QWI--------------------------TD  602 (695)
Q Consensus       565 pdg---~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~-------------~~V--------------------------~~  602 (695)
                      .+|   +.++.++.+|.|+++|.++++.+.......             .+|                          ..
T Consensus       318 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~  397 (599)
T 1w6s_A          318 KDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGH  397 (599)
T ss_dssp             TTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred             cCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCC
Confidence            467   467788899999999999999887654211             111                          13


Q ss_pred             EEEcCCCCEEEEEe---------------------------------------CCCeEEEEECCCCCeeEEEEecCCCCe
Q 005473          603 VRFSPSLSRLATSS---------------------------------------ADRTVRVWDTENPDYSLRTFTGHSTTV  643 (695)
Q Consensus       603 v~~spdg~~LaTgs---------------------------------------~DgtIrvWDl~t~~~~l~~~~gh~~~V  643 (695)
                      ++|+|+..++++..                                       .+|.|..||+.+++. +..... ...+
T Consensus       398 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~-~W~~~~-~~~~  475 (599)
T 1w6s_A          398 DSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDY-KWEKME-RFAV  475 (599)
T ss_dssp             CEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCE-EEEEEE-SSCC
T ss_pred             ccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCE-EeEecC-CCCc
Confidence            45666655554421                                       347899999998875 433321 1122


Q ss_pred             EEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecC
Q 005473          644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF  682 (695)
Q Consensus       644 ~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h  682 (695)
                      .+-.+...+. +++.++.|+.|+.||.++|+.+-.++..
T Consensus       476 ~~g~~~tagg-~vf~gt~dg~l~A~D~~tG~~lW~~~l~  513 (599)
T 1w6s_A          476 WGGTMATAGD-LVFYGTLDGYLKARDSDTGDLLWKFKIP  513 (599)
T ss_dssp             CSBCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cCcceEecCC-EEEEECCCCeEEEEECCCCCEEEEeeCC
Confidence            2111223445 5556899999999999999999888743

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.03  E-value=0.11  Score=54.98  Aligned_cols=140  Identities=8%  Similarity=0.093  Sum_probs=87.0

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEeccc-----C--CCeEEEEE---cCCCCEEEEEe----
Q 005473          552 PASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEH-----T--QWITDVRF---SPSLSRLATSS----  616 (695)
Q Consensus       552 ~~H~~~V~~v~fspdg~~LaSgs-~Dg~V~IWDl~t~~~~~~l~~H-----~--~~V~~v~~---spdg~~LaTgs----  616 (695)
                      ....-.-.|++|.+....|+.++ ..++|..||...+........+     .  ..+..|.|   .|+++++++..    
T Consensus         9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~a   88 (334)
T 2p9w_A            9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKS   88 (334)
T ss_dssp             CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred             cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccc
Confidence            33444457899988555555555 7999999999765444332222     1  13579999   68877777543    


Q ss_pred             ---------CCCeEEEEECC---CCCeeEEEEe--cC-----------CCCeEEEEEecCCCeEEEEEeCC-CcEEEEEC
Q 005473          617 ---------ADRTVRVWDTE---NPDYSLRTFT--GH-----------STTVMSLDFHPSKEDLLCSCDNN-SEIRYWSI  670 (695)
Q Consensus       617 ---------~DgtIrvWDl~---t~~~~l~~~~--gh-----------~~~V~sl~fspdg~~llaSgs~D-g~IriWDl  670 (695)
                               .+..|..||+.   +++. +....  ..           ...+..++..++|+ .+++++.. +.|..+|.
T Consensus        89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~-~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV~p  166 (334)
T 2p9w_A           89 FNFADQSSHGASSFHSFNLPLSENSKP-VWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARVSA  166 (334)
T ss_dssp             TCTTSCCSSSCCEEEEEESSCCTTCCC-SEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEECT
T ss_pred             ccccccccCCCCEEEEEcCCcCCCCCE-EEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEEEeC
Confidence                     26789999998   6554 32222  11           12478899999998 55577777 77777775


Q ss_pred             CCCeEEEEEe------cCCCcEEEEEEeCCC
Q 005473          671 NNGSCAGVFK------NFFESFVSVRVVQPR  695 (695)
Q Consensus       671 ~tg~~v~~~~------~h~~~VtsVaf~sPd  695 (695)
                      + |+.+..+.      ...-..+.|+| +|+
T Consensus       167 d-G~~~~~~~~~~~~~~~~~G~nGIv~-~pd  195 (334)
T 2p9w_A          167 D-GKTVSTFAWESGNGGQRPGYSGITF-DPH  195 (334)
T ss_dssp             T-SCCEEEEEECCCCSSSCCSCSEEEE-ETT
T ss_pred             C-CCEEeeeeecCCCcccccCcceEEE-eCC
Confidence            5 33333332      11123457787 775

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.01  E-value=0.028  Score=64.70  Aligned_cols=116  Identities=9%  Similarity=0.126  Sum_probs=75.5

Q ss_pred             EEEEcC-CCCEEEEEeCCC-----------cEEEEECCCCeEE--EEe-cccCCCeEEEEEcCCCCEEEEEeC-CCeEEE
Q 005473          560 SCHFSP-DGKLLATGGHDK-----------KAVLWCTESFTVK--STL-EEHTQWITDVRFSPSLSRLATSSA-DRTVRV  623 (695)
Q Consensus       560 ~v~fsp-dg~~LaSgs~Dg-----------~V~IWDl~t~~~~--~~l-~~H~~~V~~v~~spdg~~LaTgs~-DgtIrv  623 (695)
                      ++++.+ ++++++.|+.+.           .+.+||..+.+..  ..+ ..+.....++++..++.++++|+. +..+++
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            566666 888888887653           5889998876532  222 223344556788889999999984 568999


Q ss_pred             EECCCCCeeEEEEecCCC-CeEEEEEecCCCeEEEEEe-CC-----CcEEEEECCCCeEEE
Q 005473          624 WDTENPDYSLRTFTGHST-TVMSLDFHPSKEDLLCSCD-NN-----SEIRYWSINNGSCAG  677 (695)
Q Consensus       624 WDl~t~~~~l~~~~gh~~-~V~sl~fspdg~~llaSgs-~D-----g~IriWDl~tg~~v~  677 (695)
                      ||..+... ...-..+.. .-.++++.++++ +++.|+ .+     ..+.+||..+++...
T Consensus       270 yd~~t~~W-~~~~~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~W~~  328 (656)
T 1k3i_A          270 YDSSSDSW-IPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTS  328 (656)
T ss_dssp             EEGGGTEE-EECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEE
T ss_pred             ecCcCCce-eECCCCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCccee
Confidence            99987543 111111111 223455667877 666676 34     579999998876544

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=95.96  E-value=0.13  Score=56.19  Aligned_cols=136  Identities=11%  Similarity=0.042  Sum_probs=82.7

Q ss_pred             CeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCC---Ce-EEEEECCCCC
Q 005473          557 KVESCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RT-VRVWDTENPD  630 (695)
Q Consensus       557 ~V~~v~fspd--g~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~D---gt-IrvWDl~t~~  630 (695)
                      ...+|+|+++  +..|+.+...+.|+.+|..++...... ........|+|+++++++++....   .. +..++.....
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence            3578999984  445656555588999999877765443 345568899999999955554321   22 3333433221


Q ss_pred             eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEE-ec-CCCcEEEEEEeCCC
Q 005473          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KN-FFESFVSVRVVQPR  695 (695)
Q Consensus       631 ~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~-~~-h~~~VtsVaf~sPd  695 (695)
                      .....+. .......++++|++..|+++-..++.|+.+|..++..+..+ .. ....-..|+| +|+
T Consensus       219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~-dpd  283 (433)
T 4hw6_A          219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVW-HPT  283 (433)
T ss_dssp             CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEE-CTT
T ss_pred             ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEE-eCC
Confidence            1111222 23446678899944447767667889999999877663332 21 2222346888 774

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=95.95  E-value=0.082  Score=60.05  Aligned_cols=85  Identities=11%  Similarity=-0.069  Sum_probs=55.9

Q ss_pred             CCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC-CCeEEEEEecCCCe
Q 005473          576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKED  654 (695)
Q Consensus       576 Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~-~~V~sl~fspdg~~  654 (695)
                      ++.|..||+.+++.+..+... ..+....+...+.+++.++.|+.|++||.++++. +..+.... .....+.+..+|..
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~-lw~~~~~~~~~~~p~~~~~~G~~  520 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE-LWNFKMPSGGIGSPMTYSFKGKQ  520 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEEEEETTEE
T ss_pred             CCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCE-EEEEeCCCCcEeeeEEEEECCEE
Confidence            578999999999988877532 2233322333467888899999999999999886 55554322 22233446678875


Q ss_pred             EEEEEeCC
Q 005473          655 LLCSCDNN  662 (695)
Q Consensus       655 llaSgs~D  662 (695)
                      ++++.+..
T Consensus       521 yv~~~~G~  528 (571)
T 2ad6_A          521 YIGSMYGV  528 (571)
T ss_dssp             EEEEEECC
T ss_pred             EEEEECCC
Confidence            66554433

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.84  E-value=0.18  Score=53.61  Aligned_cols=133  Identities=11%  Similarity=0.012  Sum_probs=76.8

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-EEEEec---ccCCCeEEEEEcCC---CCEEEEEeC----C----Ce
Q 005473          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLE---EHTQWITDVRFSPS---LSRLATSSA----D----RT  620 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~-~~~~l~---~H~~~V~~v~~spd---g~~LaTgs~----D----gt  620 (695)
                      .....++|.|+|+++ ++..++.|+++|. +++ .+..+.   ........|+|+|+   +..|+.+..    +    ..
T Consensus        29 ~~P~~ia~~pdG~l~-V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYL-VTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTEEE-EEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCeEE-EEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            346899999999844 5566799999974 444 222221   12356889999997   555544432    3    56


Q ss_pred             EEEEECCCCC------e-eEEEEec-CCCCeEEEEEecCCCeEEEEEeC-------------CCcEEEEECCCC------
Q 005473          621 VRVWDTENPD------Y-SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNG------  673 (695)
Q Consensus       621 IrvWDl~t~~------~-~l~~~~g-h~~~V~sl~fspdg~~llaSgs~-------------Dg~IriWDl~tg------  673 (695)
                      |..|+.....      . .+..+.. .......|+|.|||. |+++.+.             .|.|.-+|.+..      
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np  185 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP  185 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence            7788876531      1 1111221 112346799999997 5544332             256666665421      


Q ss_pred             ---eEEEEEecCCCcEEEEEEeCC
Q 005473          674 ---SCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       674 ---~~v~~~~~h~~~VtsVaf~sP  694 (695)
                         ..+. ..+|..+ ..|+| +|
T Consensus       186 f~~~~i~-a~G~rnp-~Gla~-d~  206 (354)
T 3a9g_A          186 FPNSPIW-SYGHRNP-QGIDW-HR  206 (354)
T ss_dssp             STTCCEE-EECCSCC-CEEEE-CT
T ss_pred             CCCCcEE-EEccCCc-ceEEE-eC
Confidence               1222 2356554 56888 77

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.78  E-value=0.022  Score=66.43  Aligned_cols=135  Identities=13%  Similarity=0.065  Sum_probs=84.8

Q ss_pred             CeEEEEEcCCCCEEEEEeC-C-CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCeeE
Q 005473          557 KVESCHFSPDGKLLATGGH-D-KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSL  633 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~-D-g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~L-aTgs~DgtIrvWDl~t~~~~l  633 (695)
                      ....|++.|.+.+|+.+.. . +.|.++++........+...-.....|+|+|++..| ++-...+.|.++|++.... .
T Consensus       497 ~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-~  575 (699)
T 1n7d_A          497 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-K  575 (699)
T ss_dssp             CCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC-E
T ss_pred             CcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce-E
Confidence            4577889987665555443 2 678888876433322222223456789999975555 5555677899999975332 2


Q ss_pred             EEEe--cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          634 RTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       634 ~~~~--gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      ..+.  +.......|++..  ..++++....+.|..+|..+|+.+.++.......+.|+++||
T Consensus       576 ~~~~~~~~~~~P~glavd~--~~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~~~  636 (699)
T 1n7d_A          576 TILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHQ  636 (699)
T ss_dssp             EECCCSSSCSSCCCCEEET--TEEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCBCSS
T ss_pred             EEEecCCcCCCceEeEEEC--CEEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEEeCc
Confidence            2222  1123345566654  357777777899999999899888888654444566665344

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.73  E-value=0.17  Score=56.38  Aligned_cols=136  Identities=13%  Similarity=0.145  Sum_probs=86.6

Q ss_pred             eEEEEEcC-CCCEEEEEeC-CCcEEEEECCCCeEEEEeccc---CCCeEEEEE-------cCCCCEEEEEeCCC------
Q 005473          558 VESCHFSP-DGKLLATGGH-DKKAVLWCTESFTVKSTLEEH---TQWITDVRF-------SPSLSRLATSSADR------  619 (695)
Q Consensus       558 V~~v~fsp-dg~~LaSgs~-Dg~V~IWDl~t~~~~~~l~~H---~~~V~~v~~-------spdg~~LaTgs~Dg------  619 (695)
                      ...|+|+| +...|+.+.. .+.|++.|+.++.....+..-   ......|+|       ++++..|+++...+      
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            56899998 3444555444 467888999887766544321   235889999       99998676665543      


Q ss_pred             -eEEEEECCC-CCee----EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC-------CCeE-----------
Q 005473          620 -TVRVWDTEN-PDYS----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-------NGSC-----------  675 (695)
Q Consensus       620 -tIrvWDl~t-~~~~----l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~-------tg~~-----------  675 (695)
                       .|.+++... +...    ...+... .....++++|++..|+++...++.|+.+|+.       ++..           
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             ceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence             366776443 1221    0122211 2456788999777788888888999999997       5543           


Q ss_pred             EEE-Ee-cCCCcEEEEEEeCCC
Q 005473          676 AGV-FK-NFFESFVSVRVVQPR  695 (695)
Q Consensus       676 v~~-~~-~h~~~VtsVaf~sPd  695 (695)
                      ... +. +.......|+| +|+
T Consensus       300 ~~~l~~~~~~~~p~~ia~-~p~  320 (496)
T 3kya_A          300 FKQLFTIADPSWEFQIFI-HPT  320 (496)
T ss_dssp             EEEEEECSSSSCCEEEEE-CTT
T ss_pred             cceeEecCCCCCceEEEE-cCC
Confidence            112 22 22344578999 885

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.68  E-value=0.4  Score=51.02  Aligned_cols=141  Identities=11%  Similarity=0.058  Sum_probs=81.0

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE--EEe----cccCCCeEEEEEcCC---CCEEEEE---eCC
Q 005473          551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STL----EEHTQWITDVRFSPS---LSRLATS---SAD  618 (695)
Q Consensus       551 l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~--~~l----~~H~~~V~~v~~spd---g~~LaTg---s~D  618 (695)
                      +...-.....++|.|||+++++--..|.|++++..+++..  ..+    .........|+|+|+   +..|+..   ..+
T Consensus        27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~  106 (347)
T 3das_A           27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD  106 (347)
T ss_dssp             EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred             eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence            3333445789999999997776655899999987655532  222    122456789999995   3444332   234


Q ss_pred             CeEEEEECCCC----------CeeEEEEe-cCCCCeEEEEEecCCCeEEEEEe-------------CCCcEEEEECCCC-
Q 005473          619 RTVRVWDTENP----------DYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCD-------------NNSEIRYWSINNG-  673 (695)
Q Consensus       619 gtIrvWDl~t~----------~~~l~~~~-gh~~~V~sl~fspdg~~llaSgs-------------~Dg~IriWDl~tg-  673 (695)
                      ..|.-|.+...          +..+..+. +.......|.|.|||. |+++.+             .-|.|.-.+.+.. 
T Consensus       107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i  185 (347)
T 3das_A          107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP  185 (347)
T ss_dssp             EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred             CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence            55666665541          11112222 1112356799999997 444533             2356655565422 


Q ss_pred             --------eEEEEEecCCCcEEEEEEeCCC
Q 005473          674 --------SCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       674 --------~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                              ..+. -.+|..+ ..|+| +|+
T Consensus       186 p~~nPf~~~~i~-a~G~RNp-~Gla~-dp~  212 (347)
T 3das_A          186 APGNPFPGSPVY-SYGHRNV-QGLAW-DDK  212 (347)
T ss_dssp             CTTCSSTTCCEE-EBCCSBC-CEEEE-CTT
T ss_pred             cCCCCCCCCeEE-eeCCCCc-ceEEE-CCC
Confidence                    1122 2267655 56888 774

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=95.68  E-value=0.15  Score=58.18  Aligned_cols=83  Identities=14%  Similarity=0.022  Sum_probs=56.1

Q ss_pred             CCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCC-eEEEEEecCCCe
Q 005473          576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT-VMSLDFHPSKED  654 (695)
Q Consensus       576 Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~-V~sl~fspdg~~  654 (695)
                      +|.|..||+.+++.+.....+. .+..-.....+.++++|+.|+.|+.||.++++. +..+....+. ..-+.|..+|+.
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~-lW~~~~~~g~~a~P~~y~~~G~q  542 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE-LWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEEEEETTEE
T ss_pred             cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCE-EEEecCCCCcccCceEEEECCEE
Confidence            6889999999999887775432 222111122467888899999999999999886 6666543322 223667778876


Q ss_pred             EEEEEe
Q 005473          655 LLCSCD  660 (695)
Q Consensus       655 llaSgs  660 (695)
                      ++++.+
T Consensus       543 Yv~~~~  548 (582)
T 1flg_A          543 YLGVTV  548 (582)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            665443

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.47  E-value=0.44  Score=52.47  Aligned_cols=105  Identities=17%  Similarity=0.155  Sum_probs=61.2

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE--EEecc------cCCCeEEEEEcCC---CCEEEEEe-C------
Q 005473          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEE------HTQWITDVRFSPS---LSRLATSS-A------  617 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~--~~l~~------H~~~V~~v~~spd---g~~LaTgs-~------  617 (695)
                      ....+++|.|+|+++++-...+.|++++..++...  ..+..      ..+.+..|+|+|+   +..|..+. .      
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            34679999999997776544457888876555432  22321      2356779999995   55554433 2      


Q ss_pred             ------CCeEEEEECCCCC-------eeEEEEec-CCCCeEEEEEecCCCeEEEEEe
Q 005473          618 ------DRTVRVWDTENPD-------YSLRTFTG-HSTTVMSLDFHPSKEDLLCSCD  660 (695)
Q Consensus       618 ------DgtIrvWDl~t~~-------~~l~~~~g-h~~~V~sl~fspdg~~llaSgs  660 (695)
                            ...|.-|++....       ..+..+.. .......|+|.|||..+++.|+
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                  1346556553321       11111221 1235789999999985554443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=95.45  E-value=0.29  Score=55.89  Aligned_cols=105  Identities=10%  Similarity=0.013  Sum_probs=71.9

Q ss_pred             CCCcEEEEECCCCeEEEEecccCCC-------------------------------------e-EEEEEcCCCCEEEEEe
Q 005473          575 HDKKAVLWCTESFTVKSTLEEHTQW-------------------------------------I-TDVRFSPSLSRLATSS  616 (695)
Q Consensus       575 ~Dg~V~IWDl~t~~~~~~l~~H~~~-------------------------------------V-~~v~~spdg~~LaTgs  616 (695)
                      .++.|+.+|.++++.+..+......                                     + ..+++.++..+|+.+.
T Consensus       180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~  259 (599)
T 1w6s_A          180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT  259 (599)
T ss_dssp             CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeC
Confidence            3899999999999998877532111                                     0 1345667777887776


Q ss_pred             CC----------------CeEEEEECCCCCeeEEEEec--CCC-------CeEEEEEe-cCCC--eEEEEEeCCCcEEEE
Q 005473          617 AD----------------RTVRVWDTENPDYSLRTFTG--HST-------TVMSLDFH-PSKE--DLLCSCDNNSEIRYW  668 (695)
Q Consensus       617 ~D----------------gtIrvWDl~t~~~~l~~~~g--h~~-------~V~sl~fs-pdg~--~llaSgs~Dg~IriW  668 (695)
                      .+                +.|..+|.++++. +..+..  |..       ...-++.. .+|+  .+++.++.+|.|+++
T Consensus       260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~-~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~l  338 (599)
T 1w6s_A          260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEA-KFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTL  338 (599)
T ss_dssp             CCCSCSCGGGSCSCCTTSSEEEEEETTTCCE-EEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEE
T ss_pred             CCCccccCcccCCCccccceEEEEeCCCCce-eeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEE
Confidence            55                3899999999875 544442  211       11112332 4563  467788999999999


Q ss_pred             ECCCCeEEEEEe
Q 005473          669 SINNGSCAGVFK  680 (695)
Q Consensus       669 Dl~tg~~v~~~~  680 (695)
                      |.++|+.+..+.
T Consensus       339 D~~tG~~lw~~~  350 (599)
T 1w6s_A          339 DRTDGALVSANK  350 (599)
T ss_dssp             ETTTCCEEEEEE
T ss_pred             ECCCCCEeeccc
Confidence            999999987765

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=95.39  E-value=0.18  Score=53.71  Aligned_cols=122  Identities=11%  Similarity=0.150  Sum_probs=78.3

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCC----CC---EEEEEeC---CCeEEEEECCCCCeeEEE
Q 005473          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS----LS---RLATSSA---DRTVRVWDTENPDYSLRT  635 (695)
Q Consensus       566 dg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spd----g~---~LaTgs~---DgtIrvWDl~t~~~~l~~  635 (695)
                      ...+++....++-+.|||+ .++.+..+..  +.++.|.+.|+    ++   ++++...   +.+|++|+++.....+..
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~  115 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence            3455666666788999999 7888877753  56777777663    22   3344444   478999977422222555


Q ss_pred             Eec------CC-CCeEEEEE--ecC-CCeEEEEEeCCCcEEEEECC-------CCeEEEEEecCCCcEEEEEE
Q 005473          636 FTG------HS-TTVMSLDF--HPS-KEDLLCSCDNNSEIRYWSIN-------NGSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       636 ~~g------h~-~~V~sl~f--spd-g~~llaSgs~Dg~IriWDl~-------tg~~v~~~~~h~~~VtsVaf  691 (695)
                      +..      .. ..+..+|+  +|. +..+++....+|.+..|++.       +++.+++|.... .+-.+++
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs-q~Egcvv  187 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS-QTEGMAA  187 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS-CEEEEEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC-CcceEEE
Confidence            422      11 45677777  664 55566677888999999992       346788887554 3344444

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.34  E-value=2.8  Score=47.95  Aligned_cols=115  Identities=9%  Similarity=-0.053  Sum_probs=80.2

Q ss_pred             CeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCCeeE
Q 005473          557 KVESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSL  633 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSg-s~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~--DgtIrvWDl~t~~~~l  633 (695)
                      ....+++.+.+..|+.+ ...+.|.+.+++.......+...-.....|++.|....|+.+..  .+.|...+++....  
T Consensus        81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~--  158 (628)
T 4a0p_A           81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER--  158 (628)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC--
T ss_pred             CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce--
Confidence            46788888766655544 45688999998765443333344456789999996666655543  56788888875442  


Q ss_pred             EEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 005473          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG  673 (695)
Q Consensus       634 ~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg  673 (695)
                      ..+...-.....|++++++..|+++-...+.|..+|+...
T Consensus       159 ~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~  198 (628)
T 4a0p_A          159 TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL  198 (628)
T ss_dssp             EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence            3333344678899999988878878778889999998754

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=95.31  E-value=0.3  Score=56.05  Aligned_cols=76  Identities=12%  Similarity=0.113  Sum_probs=51.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEecccCC-CeEEEEEcCCCCEEEEEe-CC-----CeEEEEEC
Q 005473          555 TSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSPSLSRLATSS-AD-----RTVRVWDT  626 (695)
Q Consensus       555 ~~~V~~v~fspdg~~LaSgs~-Dg~V~IWDl~t~~~~~~l~~H~~-~V~~v~~spdg~~LaTgs-~D-----gtIrvWDl  626 (695)
                      .....++++..++++++.|+. +..|.+||..+.+....-..+.. .-.++++.+++++++.|+ .+     ..+.+||.
T Consensus       242 ~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~  321 (656)
T 1k3i_A          242 DMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSP  321 (656)
T ss_dssp             CCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEET
T ss_pred             CCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCC
Confidence            333456788889999999984 56899999987654432221211 223455667889999988 44     46999999


Q ss_pred             CCCC
Q 005473          627 ENPD  630 (695)
Q Consensus       627 ~t~~  630 (695)
                      .+..
T Consensus       322 ~t~~  325 (656)
T 1k3i_A          322 SSKT  325 (656)
T ss_dssp             TTTE
T ss_pred             CCCc
Confidence            7654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.29  E-value=1.6  Score=49.83  Aligned_cols=117  Identities=7%  Similarity=-0.062  Sum_probs=80.9

Q ss_pred             CCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCCee
Q 005473          556 SKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYS  632 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs-~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~--DgtIrvWDl~t~~~~  632 (695)
                      .....+++.+.++.|+.+. ..+.|.+.+++.......+...-.....|++.|.+..|+.+..  .+.|...+++.... 
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~-  162 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-  162 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC-
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce-
Confidence            4578999999666555554 5689999999765443334344556779999997666655543  46777777774332 


Q ss_pred             EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 005473          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG  673 (695)
Q Consensus       633 l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg  673 (695)
                      .......-.....|++++++..|+++-...+.|..+|+...
T Consensus       163 ~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~  203 (619)
T 3s94_A          163 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT  203 (619)
T ss_dssp             EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC
T ss_pred             EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC
Confidence            22222334567899999987878877777889999998753

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.15  E-value=0.76  Score=47.76  Aligned_cols=134  Identities=14%  Similarity=0.121  Sum_probs=75.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-EEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeE
Q 005473          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (695)
Q Consensus       555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~-~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l  633 (695)
                      .+.+.+|.+.++++.++++ .++.|.. ..+.++. ......+...+..+.+.+++.+++.+...+.++-+|-..... .
T Consensus       121 ~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW-~  197 (327)
T 2xbg_A          121 PGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAW-E  197 (327)
T ss_dssp             SSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSC-E
T ss_pred             CCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCce-e
Confidence            3457788887777766655 4554432 2222332 222345566789999999888887775554455555311111 1


Q ss_pred             EEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe-c---CCCcEEEEEEeCC
Q 005473          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-N---FFESFVSVRVVQP  694 (695)
Q Consensus       634 ~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~-~---h~~~VtsVaf~sP  694 (695)
                      ..-......+..+.+.+++. ++ .++.+|.|++++.+.|+.-..+. .   +...+.+|+| .|
T Consensus       198 ~~~~~~~~~~~~~~~~~~g~-~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~-~~  259 (327)
T 2xbg_A          198 PHNRTTSRRLHNMGFTPDGR-LW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAY-RT  259 (327)
T ss_dssp             EEECCSSSCEEEEEECTTSC-EE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEE-SS
T ss_pred             ECCCCCCCccceeEECCCCC-EE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEe-cC
Confidence            11234456788999999876 44 34457888877533233222222 1   2234677777 54

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=95.00  E-value=1.2  Score=51.84  Aligned_cols=130  Identities=8%  Similarity=-0.037  Sum_probs=83.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe---cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 005473          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL---EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (695)
Q Consensus       555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l---~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~  631 (695)
                      ...|.++...++|++. .|+.++-|.+||..++......   ......|.++...+++.+ ..|+.++.|.+||.++++ 
T Consensus       362 ~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~-  438 (781)
T 3v9f_A          362 NKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKK-  438 (781)
T ss_dssp             SSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCE-
T ss_pred             CcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCc-
Confidence            3469999998888754 5565566888998754432111   123467999988877654 446777789999988654 


Q ss_pred             eEEEEe---cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecC-----CCcEEEEEE
Q 005473          632 SLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF-----FESFVSVRV  691 (695)
Q Consensus       632 ~l~~~~---gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h-----~~~VtsVaf  691 (695)
                       +..+.   .....|.++...++|. ++ .|+. +-|.+||..+++........     ...|.+|..
T Consensus       439 -~~~~~~~~~~~~~v~~i~~d~~g~-lw-igt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  502 (781)
T 3v9f_A          439 -FQIIELEKNELLDVRVFYEDKNKK-IW-IGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQ  502 (781)
T ss_dssp             -EEECCSTTTCCCCEEEEEECTTSE-EE-EEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEE
T ss_pred             -EEEeccCCCCCCeEEEEEECCCCC-EE-EEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEE
Confidence             23332   1345789998888876 44 3444 56889998876554433222     356777765

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=94.99  E-value=0.52  Score=52.55  Aligned_cols=115  Identities=11%  Similarity=0.075  Sum_probs=74.0

Q ss_pred             CCeEEEEE-------cCCCCEEEEEeCCC-------cEEEEECCC-CeEE-----EEecccCCCeEEEEEcCC-CCEEEE
Q 005473          556 SKVESCHF-------SPDGKLLATGGHDK-------KAVLWCTES-FTVK-----STLEEHTQWITDVRFSPS-LSRLAT  614 (695)
Q Consensus       556 ~~V~~v~f-------spdg~~LaSgs~Dg-------~V~IWDl~t-~~~~-----~~l~~H~~~V~~v~~spd-g~~LaT  614 (695)
                      .....|+|       +++|+.|+++...+       .|.+++... +...     ..+... .....++++|+ +.++++
T Consensus       186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvt  264 (496)
T 3kya_A          186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFN  264 (496)
T ss_dssp             SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEE
T ss_pred             CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEE
Confidence            35789999       99999777776554       255665333 1221     222221 23457788995 555566


Q ss_pred             EeCCCeEEEEECC-------CCCe-----e-----EEE-E-ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 005473          615 SSADRTVRVWDTE-------NPDY-----S-----LRT-F-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (695)
Q Consensus       615 gs~DgtIrvWDl~-------t~~~-----~-----l~~-~-~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~  671 (695)
                      -..++.|+.+|+.       ++..     +     ... + .+...+.+.|+|+|+|..++++-...+.|+.+|..
T Consensus       265 d~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          265 SYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             ETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence            6678889999997       4432     0     111 1 22334568999999999777777778899996653

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=94.94  E-value=1.9  Score=44.62  Aligned_cols=132  Identities=11%  Similarity=0.182  Sum_probs=77.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC--CCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 005473          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCT--ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (695)
Q Consensus       553 ~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl--~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~  630 (695)
                      .+...+.++.+.+++++++.+...+.++-+|-  .+.+.+  -......+..+.+.+++.+++ ++.+|.|++++.+.+.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~  236 (327)
T 2xbg_A          160 EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSE  236 (327)
T ss_dssp             SCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE--ECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEE
T ss_pred             CCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC--CCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCC
Confidence            44557899999999988877654444444453  233333  234456788999999876654 4567888887533221


Q ss_pred             eeEEEEe-c---CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec---CCCcEEEEEE
Q 005473          631 YSLRTFT-G---HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKN---FFESFVSVRV  691 (695)
Q Consensus       631 ~~l~~~~-g---h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~---h~~~VtsVaf  691 (695)
                      . -..+. .   +...+.++.|.+++. +++++. +|.| ++..+.|+.=..+..   +...+.+|.|
T Consensus       237 t-W~~~~~~~~~~~~~~~~v~~~~~~~-~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~  300 (327)
T 2xbg_A          237 N-WGELLSPLRRNSVGFLDLAYRTPNE-VWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILF  300 (327)
T ss_dssp             E-ECCCBCTTSSCCSCEEEEEESSSSC-EEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEE
T ss_pred             e-eEeccCCcccCCcceEEEEecCCCE-EEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEE
Confidence            1 11111 1   223588999998765 565554 6766 455555543333331   2345566666

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=94.85  E-value=0.79  Score=53.48  Aligned_cols=132  Identities=8%  Similarity=-0.033  Sum_probs=83.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 005473          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (695)
Q Consensus       554 H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~--~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~  631 (695)
                      ....|.++...++|++.+ |+.++-|.+||..+++......  .....|.++...+++. |..|+. +.|.+||..++..
T Consensus       405 ~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~  481 (781)
T 3v9f_A          405 LSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKV  481 (781)
T ss_dssp             CCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSC
T ss_pred             CCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeE
Confidence            345699999988887554 6666678999987766543221  1346799998888765 444555 5689999887553


Q ss_pred             eEEEEecC-----CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec---CCCcEEEEEE
Q 005473          632 SLRTFTGH-----STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKN---FFESFVSVRV  691 (695)
Q Consensus       632 ~l~~~~gh-----~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~---h~~~VtsVaf  691 (695)
                       .......     ...|.++...++|. ++ .|+.++-|..||..+++.......   ....|.+|..
T Consensus       482 -~~~~~~~~~~~~~~~i~~i~~d~~g~-lW-igt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~  546 (781)
T 3v9f_A          482 -IHHYDTSNSQLLENFVRSIAQDSEGR-FW-IGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYR  546 (781)
T ss_dssp             -CEEECTTTSSCSCSCEEEEEECTTCC-EE-EEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEE
T ss_pred             -EecccCcccccccceeEEEEEcCCCC-EE-EEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEE
Confidence             2222111     35789999998887 44 344434477899876654332211   1345666665

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=94.74  E-value=0.088  Score=61.35  Aligned_cols=114  Identities=9%  Similarity=-0.046  Sum_probs=74.6

Q ss_pred             eEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC-C-CeEEEEECCCCCeeEE
Q 005473          558 VESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-D-RTVRVWDTENPDYSLR  634 (695)
Q Consensus       558 V~~v~fspdg-~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~-D-gtIrvWDl~t~~~~l~  634 (695)
                      ...|++.+.+ +++++-...+.|.++++........+.........|++.|.+.+|+.+.. . +.|.+++++.... ..
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~  533 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YS  533 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CE
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eE
Confidence            4567887544 44444455788999998765544444333345678899997655554433 2 6788888764332 12


Q ss_pred             EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (695)
Q Consensus       635 ~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t  672 (695)
                      .+...-.....|+|+|++..|+++-...+.|.++|+..
T Consensus       534 l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          534 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  571 (699)
T ss_dssp             ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred             EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence            22222345678999998887888887888999999864

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.60  E-value=0.27  Score=52.08  Aligned_cols=113  Identities=15%  Similarity=0.102  Sum_probs=64.9

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe-------cccCCCeEEEEEcCC---CCEEEEE-eC-------C
Q 005473          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPS---LSRLATS-SA-------D  618 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l-------~~H~~~V~~v~~spd---g~~LaTg-s~-------D  618 (695)
                      ....|+|.|+|+.|+.+..+|.|++++.. +.....+       ....+....|+|+|+   +..|+.+ ..       .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            36899999999944455668999999854 3321111       112345689999996   4555443 22       2


Q ss_pred             CeEEEEECCCCC--e-eEE-EEecC------CCCeEEEEEecCCCeEEEEEeC-------------CCcEEEEECC
Q 005473          619 RTVRVWDTENPD--Y-SLR-TFTGH------STTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSIN  671 (695)
Q Consensus       619 gtIrvWDl~t~~--~-~l~-~~~gh------~~~V~sl~fspdg~~llaSgs~-------------Dg~IriWDl~  671 (695)
                      ..|..|++....  . ... .+.+.      ......|.|.|||. |+++.+.             .|.|.-+|.+
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d  172 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQ  172 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETT
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCC
Confidence            356666665331  1 011 11111      11246799999995 5545432             2467777765

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=94.13  E-value=10  Score=43.24  Aligned_cols=116  Identities=6%  Similarity=-0.045  Sum_probs=77.4

Q ss_pred             CCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCCee
Q 005473          556 SKVESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYS  632 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSg-s~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~--DgtIrvWDl~t~~~~  632 (695)
                      .....+++...++.|+.+ ...+.|.+.+++.......+...-.....|++.|....|+.+..  ...|...+++.... 
T Consensus       392 ~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~-  470 (619)
T 3s94_A          392 AHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR-  470 (619)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-
T ss_pred             CCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc-
Confidence            456789998755545444 45788999998765433333334456889999997555544432  36777777764332 


Q ss_pred             EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (695)
Q Consensus       633 l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t  672 (695)
                      .......-.....|++++++..|+++-...+.|..+|+..
T Consensus       471 ~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG  510 (619)
T 3s94_A          471 VVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDG  510 (619)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSS
T ss_pred             EEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCC
Confidence            2223333457889999998777877767778899999864

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=93.81  E-value=12  Score=42.83  Aligned_cols=133  Identities=9%  Similarity=0.011  Sum_probs=84.3

Q ss_pred             CCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEe-cccCCCeEEEEEcCC-CCEEEEEeCCC--eEEEEECCCCC
Q 005473          556 SKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPS-LSRLATSSADR--TVRVWDTENPD  630 (695)
Q Consensus       556 ~~V~~v~fspdg~~La-Sgs~Dg~V~IWDl~t~~~~~~l-~~H~~~V~~v~~spd-g~~LaTgs~Dg--tIrvWDl~t~~  630 (695)
                      ..+..+++...++.|+ +-+..+.|.+.+++. +...++ .........|++.|. |.+++|-....  .|...+++...
T Consensus       389 ~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G-~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~  467 (628)
T 4a0p_A          389 IQPYDLSIDIYSRYIYWTCEATNVINVTRLDG-RSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTE  467 (628)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCS
T ss_pred             CCcceEEeeccCCeEEEEcCCCCEEEEEECCC-CeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCC
Confidence            4578999999877555 545678899999864 444343 344567899999995 54455543332  57777776433


Q ss_pred             eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe-cCCCcEEEEEE
Q 005473          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-NFFESFVSVRV  691 (695)
Q Consensus       631 ~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~-~h~~~VtsVaf  691 (695)
                      . .......-.....|++++++..|+++-+..+.|..+|++. ...+++. .......+|++
T Consensus       468 ~-~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG-~~r~~~~~~~~~~P~glav  527 (628)
T 4a0p_A          468 R-EVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSG-ANRIVLEDSNILQPVGLTV  527 (628)
T ss_dssp             C-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSSCSCEEEEEE
T ss_pred             c-EEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCC-CceEEEEcCCCCCcEEEEE
Confidence            2 2223333456799999998777777766678999999853 3333333 22223345543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=93.61  E-value=1.4  Score=46.87  Aligned_cols=134  Identities=16%  Similarity=0.241  Sum_probs=78.4

Q ss_pred             eeeeEEEecCCC-CCeEEEEEcCCCCEEEEEeC---C------------CcEEEEECCCCeEEEEecccCCCeEEEEEcC
Q 005473          544 TFTEFQLIPAST-SKVESCHFSPDGKLLATGGH---D------------KKAVLWCTESFTVKSTLEEHTQWITDVRFSP  607 (695)
Q Consensus       544 ~~~~v~~l~~H~-~~V~~v~fspdg~~LaSgs~---D------------g~V~IWDl~t~~~~~~l~~H~~~V~~v~~sp  607 (695)
                      ....+..+.+.. ...+.+++.++|+++++...   |            ..-+||.+..+++. .+...-..-+.|+|+|
T Consensus       152 ~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~-~~~~~l~~pNGia~sp  230 (355)
T 3sre_A          152 SLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVR-VVAEGFDFANGINISP  230 (355)
T ss_dssp             EEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCE-EEEEEESSEEEEEECT
T ss_pred             EEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEE-EeecCCcccCcceECC
Confidence            344555555432 34789999999998777641   1            23344444444433 2322345678999999


Q ss_pred             CCCEEEEE-eCCCeEEEEECCCCC-ee-EEEEecCCCCeEEEEEec-CCCeEEEEEeCC-CcEEEEECC--CCeEEEEEe
Q 005473          608 SLSRLATS-SADRTVRVWDTENPD-YS-LRTFTGHSTTVMSLDFHP-SKEDLLCSCDNN-SEIRYWSIN--NGSCAGVFK  680 (695)
Q Consensus       608 dg~~LaTg-s~DgtIrvWDl~t~~-~~-l~~~~gh~~~V~sl~fsp-dg~~llaSgs~D-g~IriWDl~--tg~~v~~~~  680 (695)
                      |++.|+.+ +..+.|+.||++... .. .+.+ ...+..-.+++.+ +|. +++++..+ +.|..||..  .++.+..+.
T Consensus       231 Dg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~-lwva~~~~g~~v~~~~P~~~~~s~v~rI~  308 (355)
T 3sre_A          231 DGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGD-LWVGCHPNGMRIFFYDAENPPGSEVLRIQ  308 (355)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCC-EEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred             CCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCc-EEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence            99877665 457899999997432 21 2233 2345667788898 587 55555433 344444433  244444443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=93.25  E-value=2.1  Score=43.13  Aligned_cols=106  Identities=11%  Similarity=0.065  Sum_probs=58.8

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCeEEEEe--cccCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCCeeE
Q 005473          566 DGKLLATGGHD-----KKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYSL  633 (695)
Q Consensus       566 dg~~LaSgs~D-----g~V~IWDl~t~~~~~~l--~~H~~~V~~v~~spdg~~LaTgs~D-----gtIrvWDl~t~~~~l  633 (695)
                      ++++++.|+.+     ..|.+||..+.+-...-  ........++.+  ++.+++.|+.+     ..|.+||+.+.....
T Consensus       159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  236 (301)
T 2vpj_A          159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT  236 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence            67777777754     45889998876544321  111111222333  45677777654     468999998765421


Q ss_pred             E-EEecCCCCeEEEEEecCCCeEEEEEeCC-----CcEEEEECCCCeEE
Q 005473          634 R-TFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCA  676 (695)
Q Consensus       634 ~-~~~gh~~~V~sl~fspdg~~llaSgs~D-----g~IriWDl~tg~~v  676 (695)
                      . .+........++. . ++ .+++.|+.+     ..|.+||+.+.+..
T Consensus       237 ~~~~p~~r~~~~~~~-~-~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~  282 (301)
T 2vpj_A          237 VTSMTTPRCYVGATV-L-RG-RLYAIAGYDGNSLLSSIECYDPIIDSWE  282 (301)
T ss_dssp             ECCCSSCCBSCEEEE-E-TT-EEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred             CCCCCCcccceeEEE-E-CC-EEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence            1 1111111112222 2 44 477777755     46889999887543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=92.38  E-value=4.5  Score=42.90  Aligned_cols=112  Identities=11%  Similarity=0.051  Sum_probs=71.0

Q ss_pred             CeEEEEEcC--CCC-EEEEEeC---CCcEEEEECCCC--e--EEEEeccc-CCCeEEEEEcCCCCEEEEEeC--------
Q 005473          557 KVESCHFSP--DGK-LLATGGH---DKKAVLWCTESF--T--VKSTLEEH-TQWITDVRFSPSLSRLATSSA--------  617 (695)
Q Consensus       557 ~V~~v~fsp--dg~-~LaSgs~---Dg~V~IWDl~t~--~--~~~~l~~H-~~~V~~v~~spdg~~LaTgs~--------  617 (695)
                      ....+.+.+  +++ +|+.+..   +.+|-||+++..  .  .+..+.+. -...+++.+.++|.++++...        
T Consensus       113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~  192 (355)
T 3sre_A          113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLK  192 (355)
T ss_dssp             CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHH
T ss_pred             eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccc
Confidence            355666644  454 4545432   467778776542  2  23344432 245789999999988777641        


Q ss_pred             ---------CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473          618 ---------DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (695)
Q Consensus       618 ---------DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t  672 (695)
                               .|.|..||..  .  +..+...-.....++|+||++.++++-+..+.|+.||+..
T Consensus       193 ~~e~~~~~~~g~vyr~d~~--~--~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          193 SWEMHLGLAWSFVTYYSPN--D--VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             HHHHHTTCCCEEEEEECTT--C--CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             cchhhccCCccEEEEEECC--e--EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence                     2445555553  2  2222222345789999999998888888889999999863

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=92.33  E-value=10  Score=41.57  Aligned_cols=130  Identities=10%  Similarity=0.195  Sum_probs=83.1

Q ss_pred             CCeEEEEEcCCCCEEEEEe-------CCCcEEEEECCCCeEEEEecccCCCeEEEEEcCC---CCEEEEEeC---CCeEE
Q 005473          556 SKVESCHFSPDGKLLATGG-------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSA---DRTVR  622 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs-------~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spd---g~~LaTgs~---DgtIr  622 (695)
                      ..|..-..+++.++++..|       -.|.+-+|.++. +.-..++||.+....+.+.-+   ..++..+..   .++++
T Consensus       151 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLh  229 (494)
T 1bpo_A          151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLH  229 (494)
T ss_dssp             CEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEE
T ss_pred             ceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEE
Confidence            3466677788888766443       247788999875 445678888766655554322   123444444   37899


Q ss_pred             EEECCCC--------CeeEEEEec---CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEE
Q 005473          623 VWDTENP--------DYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFV  687 (695)
Q Consensus       623 vWDl~t~--------~~~l~~~~g---h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~Vt  687 (695)
                      |-++...        +..+..+..   -.+.-.++..++.-. +++.-+.-|.|++||+.++.|+..-+-..++|-
T Consensus       230 i~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg-viyviTK~G~i~lyDleTgt~i~~nrIs~~~iF  304 (494)
T 1bpo_A          230 IIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNRISGETIF  304 (494)
T ss_dssp             EEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             EEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC-EEEEEecCceEEEEecccceeeeeecccCCceE
Confidence            9998653        111111211   134456788888766 566778899999999999999877664444443

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=91.80  E-value=2.5  Score=42.68  Aligned_cols=106  Identities=12%  Similarity=0.113  Sum_probs=58.1

Q ss_pred             CCCEEEEEeCC-------CcEEEEECCCCeEEEEe--cccCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCCe
Q 005473          566 DGKLLATGGHD-------KKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDY  631 (695)
Q Consensus       566 dg~~LaSgs~D-------g~V~IWDl~t~~~~~~l--~~H~~~V~~v~~spdg~~LaTgs~D-----gtIrvWDl~t~~~  631 (695)
                      ++++++.|+.+       ..|.+||+.+.+-...-  ........++.+  ++.+++.|+.+     ..|.+||+.+...
T Consensus       155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  232 (302)
T 2xn4_A          155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAW  232 (302)
T ss_dssp             TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEE
T ss_pred             CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCE
Confidence            56666666543       35889999876543321  111111222323  46677777654     3699999987554


Q ss_pred             eEEEEecC--CCCeEEEEEecCCCeEEEEEeCCC-----cEEEEECCCCeEEE
Q 005473          632 SLRTFTGH--STTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAG  677 (695)
Q Consensus       632 ~l~~~~gh--~~~V~sl~fspdg~~llaSgs~Dg-----~IriWDl~tg~~v~  677 (695)
                      .  .+...  ...-.+++.. ++ .+++.|+.++     .|.+||+.+.+...
T Consensus       233 ~--~~~~~~~~r~~~~~~~~-~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  281 (302)
T 2xn4_A          233 R--QVADMNMCRRNAGVCAV-NG-LLYVVGGDDGSCNLASVEYYNPTTDKWTV  281 (302)
T ss_dssp             E--EECCCSSCCBSCEEEEE-TT-EEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             e--eCCCCCCccccCeEEEE-CC-EEEEECCcCCCcccccEEEEcCCCCeEEE
Confidence            2  11111  1111122222 44 4777777553     48999998876543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=91.54  E-value=5  Score=43.97  Aligned_cols=124  Identities=16%  Similarity=0.221  Sum_probs=87.1

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecC
Q 005473          560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH  639 (695)
Q Consensus       560 ~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh  639 (695)
                      +.-.+|..+.||.-. ..++.|||+++...++.+.-.. .|.-=+|-.+ +.|+..+ +..|+-|++.....+++.|..|
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~  145 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRH  145 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecc
Confidence            455677777776665 7889999999988887776544 4555566443 4554443 5689999998766778888877


Q ss_pred             C----CCeEEEEEecCCCeEEEEEe------CCCcEEEEECCCCeEEEEEecCCCcEEE
Q 005473          640 S----TTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKNFFESFVS  688 (695)
Q Consensus       640 ~----~~V~sl~fspdg~~llaSgs------~Dg~IriWDl~tg~~v~~~~~h~~~Vts  688 (695)
                      .    ..|..-..+++.+|++++|-      -.|.+.+|.++. +.-..+.||.....+
T Consensus       146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~  203 (494)
T 1bpo_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQ  203 (494)
T ss_dssp             GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEE
T ss_pred             hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeeeeeEE
Confidence            5    34667777899998887764      357899999875 345556666544433

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=91.49  E-value=14  Score=38.94  Aligned_cols=99  Identities=13%  Similarity=0.119  Sum_probs=54.4

Q ss_pred             CCCeEEEEEcCC---CCEEEEE---eCCCcEEEEECCC----------CeEEE-Eec-ccCCCeEEEEEcCCCCEEEEEe
Q 005473          555 TSKVESCHFSPD---GKLLATG---GHDKKAVLWCTES----------FTVKS-TLE-EHTQWITDVRFSPSLSRLATSS  616 (695)
Q Consensus       555 ~~~V~~v~fspd---g~~LaSg---s~Dg~V~IWDl~t----------~~~~~-~l~-~H~~~V~~v~~spdg~~LaTgs  616 (695)
                      ......|+|+|+   +.+|+..   ..+..|.-|.+..          .+.+. .+. ........|.|.|+|.++++.+
T Consensus        79 ~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A           79 EGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             TBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             CCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            445789999995   3444432   2344555565543          12221 221 1122346799999998877754


Q ss_pred             C-------------CCeEEEEECCCC--------CeeEEEEecCCCCeEEEEEecCCCeEE
Q 005473          617 A-------------DRTVRVWDTENP--------DYSLRTFTGHSTTVMSLDFHPSKEDLL  656 (695)
Q Consensus       617 ~-------------DgtIrvWDl~t~--------~~~l~~~~gh~~~V~sl~fspdg~~ll  656 (695)
                      .             .|.|.-.+.+..        .. .....||. ....++|+|+|. |+
T Consensus       159 d~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~-~i~a~G~R-Np~Gla~dp~G~-L~  216 (347)
T 3das_A          159 ESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGS-PVYSYGHR-NVQGLAWDDKQR-LF  216 (347)
T ss_dssp             CTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTC-CEEEBCCS-BCCEEEECTTCC-EE
T ss_pred             CCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCC-eEEeeCCC-CcceEEECCCCC-EE
Confidence            2             244554555432        11 12223553 356899999876 44

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=91.40  E-value=0.57  Score=46.75  Aligned_cols=105  Identities=15%  Similarity=0.103  Sum_probs=64.3

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE------EEEe--cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 005473          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTV------KSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~------~~~l--~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t  628 (695)
                      .+.+++|+|+|.+.++  .+|.+.-.+..+...      -..+  .+-.. ..++.|.|+|.+.++  .||.|+-|+..+
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            5779999999986666  677776666544211      1122  12222 578999999988877  469998887643


Q ss_pred             CCee------EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEE
Q 005473          629 PDYS------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS  669 (695)
Q Consensus       629 ~~~~------l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWD  669 (695)
                      ...-      ...-.+-=..+..|.|.|+|. |.+..  |+.++-+.
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~--dg~lyr~~  160 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH--GQQFYKAL  160 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE--TTEEEEEC
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCce-EEEEe--CCcEEecC
Confidence            2210      111111114579999999987 55343  77764433

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=91.38  E-value=14  Score=40.30  Aligned_cols=118  Identities=16%  Similarity=0.104  Sum_probs=63.6

Q ss_pred             CCCeEEEEEcCC---CCEEEEEeC-------------CCcEEEEECCCC-------eEEE-Eec-ccCCCeEEEEEcCCC
Q 005473          555 TSKVESCHFSPD---GKLLATGGH-------------DKKAVLWCTESF-------TVKS-TLE-EHTQWITDVRFSPSL  609 (695)
Q Consensus       555 ~~~V~~v~fspd---g~~LaSgs~-------------Dg~V~IWDl~t~-------~~~~-~l~-~H~~~V~~v~~spdg  609 (695)
                      ...+..|+|+|+   +.+|+.+..             ...|.-|+....       +.+. .+. ........|+|.|+|
T Consensus        76 ~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG  155 (454)
T 1cru_A           76 QNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ  155 (454)
T ss_dssp             SCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS
T ss_pred             CCceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC
Confidence            455789999995   555554432             124555554321       1111 121 122357899999999


Q ss_pred             CEEEEEeCC--------------------------------CeEEEEECCCCC----------eeEEEEecCCCCeEEEE
Q 005473          610 SRLATSSAD--------------------------------RTVRVWDTENPD----------YSLRTFTGHSTTVMSLD  647 (695)
Q Consensus       610 ~~LaTgs~D--------------------------------gtIrvWDl~t~~----------~~l~~~~gh~~~V~sl~  647 (695)
                      .++++.+..                                |.|.-+|.+..-          .......+| .....++
T Consensus       156 ~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~-RNp~gla  234 (454)
T 1cru_A          156 KIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGH-RNPQGLA  234 (454)
T ss_dssp             CEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCC-SEEEEEE
T ss_pred             eEEEEECCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECC-CCcceEE
Confidence            887775531                                334444443210          111222344 3478899


Q ss_pred             EecCCCeEEEEEeCCCcEEEEECCCC
Q 005473          648 FHPSKEDLLCSCDNNSEIRYWSINNG  673 (695)
Q Consensus       648 fspdg~~llaSgs~Dg~IriWDl~tg  673 (695)
                      |+|+|..+++--+.++.-.|.-+..|
T Consensus       235 ~dp~G~L~~~d~g~~~~dein~i~~G  260 (454)
T 1cru_A          235 FTPNGKLLQSEQGPNSDDEINLIVKG  260 (454)
T ss_dssp             ECTTSCEEEEEECSSSCEEEEECCTT
T ss_pred             ECCCCCEEEEecCCCCCeEEEEecCC
Confidence            99987755544455555555555543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=91.35  E-value=3.4  Score=41.48  Aligned_cols=106  Identities=10%  Similarity=0.099  Sum_probs=58.0

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCeEEEE--ecccCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCCeeE
Q 005473          566 DGKLLATGGHD-----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYSL  633 (695)
Q Consensus       566 dg~~LaSgs~D-----g~V~IWDl~t~~~~~~--l~~H~~~V~~v~~spdg~~LaTgs~D-----gtIrvWDl~t~~~~l  633 (695)
                      ++++++.|+.+     ..+.+||..+.+-...  +........++.+  ++.+++.|+.+     ..+.+||+.+.....
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  189 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN  189 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence            56777777654     3588899887654332  2111111222222  56677777654     458999998765421


Q ss_pred             E-EEecCCCCeEEEEEecCCCeEEEEEeCC-----CcEEEEECCCCeEE
Q 005473          634 R-TFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCA  676 (695)
Q Consensus       634 ~-~~~gh~~~V~sl~fspdg~~llaSgs~D-----g~IriWDl~tg~~v  676 (695)
                      . .+. ....-.+++.. + ..+++.|+.+     ..|.+||+.+.+..
T Consensus       190 ~~~~p-~~r~~~~~~~~-~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  235 (301)
T 2vpj_A          190 VTPMA-TKRSGAGVALL-N-DHIYVVGGFDGTAHLSSVEAYNIRTDSWT  235 (301)
T ss_dssp             ECCCS-SCCBSCEEEEE-T-TEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             CCCCC-cccccceEEEE-C-CEEEEEeCCCCCcccceEEEEeCCCCcEE
Confidence            1 111 11111122222 3 3477777754     46899999877544

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=90.83  E-value=3.7  Score=41.31  Aligned_cols=106  Identities=11%  Similarity=0.128  Sum_probs=56.8

Q ss_pred             CCCEEEEEeCCC-----cEEEEECCCCeEEEEe--cccCCCeEEEEEcCCCCEEEEEeCC-------CeEEEEECCCCCe
Q 005473          566 DGKLLATGGHDK-----KAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSAD-------RTVRVWDTENPDY  631 (695)
Q Consensus       566 dg~~LaSgs~Dg-----~V~IWDl~t~~~~~~l--~~H~~~V~~v~~spdg~~LaTgs~D-------gtIrvWDl~t~~~  631 (695)
                      ++++++.|+.++     .+.+||..+.+-...-  ........++.+  ++.+++.|+.+       ..+.+||+.+...
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W  185 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEW  185 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence            567777777653     5778898776543321  111111222222  45666776542       3589999987653


Q ss_pred             eEE-EEecCCCCeEEEEEecCCCeEEEEEeCC-----CcEEEEECCCCeEE
Q 005473          632 SLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCA  676 (695)
Q Consensus       632 ~l~-~~~gh~~~V~sl~fspdg~~llaSgs~D-----g~IriWDl~tg~~v  676 (695)
                      ... .+...... .+++.. ++ .+++.|+.+     ..|.+||+.+.+..
T Consensus       186 ~~~~~~p~~r~~-~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~  233 (302)
T 2xn4_A          186 TYIAEMSTRRSG-AGVGVL-NN-LLYAVGGHDGPLVRKSVEVYDPTTNAWR  233 (302)
T ss_dssp             EEECCCSSCCBS-CEEEEE-TT-EEEEECCBSSSSBCCCEEEEETTTTEEE
T ss_pred             EECCCCcccccc-ccEEEE-CC-EEEEECCCCCCcccceEEEEeCCCCCEe
Confidence            211 11111111 122222 33 477777754     36999999876543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=90.70  E-value=4.8  Score=40.59  Aligned_cols=106  Identities=12%  Similarity=0.129  Sum_probs=56.6

Q ss_pred             CCCEEEEEeCC------CcEEEEECCCCeEEEEec--ccCCCeEEEEEcCCCCEEEEEeC---------CCeEEEEECCC
Q 005473          566 DGKLLATGGHD------KKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSA---------DRTVRVWDTEN  628 (695)
Q Consensus       566 dg~~LaSgs~D------g~V~IWDl~t~~~~~~l~--~H~~~V~~v~~spdg~~LaTgs~---------DgtIrvWDl~t  628 (695)
                      ++++++.|+.+      ..+.+||..+.+-...-.  .......++.+  ++.+++.|+.         -..+.+||+.+
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~  178 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPAT  178 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCC
Confidence            67777777765      468899998765433211  11111122222  5566677653         34588999987


Q ss_pred             CCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC-----CcEEEEECCCCeE
Q 005473          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSC  675 (695)
Q Consensus       629 ~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D-----g~IriWDl~tg~~  675 (695)
                      .......-......-.+++.. ++ .+++.|+.+     ..|.+||+.+.+.
T Consensus       179 ~~W~~~~~~p~~r~~~~~~~~-~~-~i~v~GG~~~~~~~~~~~~yd~~~~~W  228 (306)
T 3ii7_A          179 ETWTELCPMIEARKNHGLVFV-KD-KIFAVGGQNGLGGLDNVEYYDIKLNEW  228 (306)
T ss_dssp             TEEEEECCCSSCCBSCEEEEE-TT-EEEEECCEETTEEBCCEEEEETTTTEE
T ss_pred             CeEEECCCccchhhcceEEEE-CC-EEEEEeCCCCCCCCceEEEeeCCCCcE
Confidence            653211100111111222222 33 466677643     4689999987653

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=90.28  E-value=0.65  Score=49.19  Aligned_cols=113  Identities=6%  Similarity=0.006  Sum_probs=71.1

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccc-CCCeEEEEEc--CCCCEEEEE--eCCCeEEEEECCCCCeeEEEEec----
Q 005473          568 KLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFS--PSLSRLATS--SADRTVRVWDTENPDYSLRTFTG----  638 (695)
Q Consensus       568 ~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H-~~~V~~v~~s--pdg~~LaTg--s~DgtIrvWDl~t~~~~l~~~~g----  638 (695)
                      .+++.++.||.|.-+|..+|+.+..+... ..++....-.  +.+..++.+  ..||.|..+|..++.. ...+.-    
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~-~~~~~~~~lv   89 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQ-KLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEE-EEEEEHHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcE-Eeeeccccce
Confidence            36889999999999999999999998654 1233222111  112244433  5799999999987643 222221    


Q ss_pred             CCCCeEE---EEE-ec---CCCeEEEEEeCCCcEEEEECCCCeEEEEEec
Q 005473          639 HSTTVMS---LDF-HP---SKEDLLCSCDNNSEIRYWSINNGSCAGVFKN  681 (695)
Q Consensus       639 h~~~V~s---l~f-sp---dg~~llaSgs~Dg~IriWDl~tg~~v~~~~~  681 (695)
                      ..+++..   ..+ .+   .....+++|+.+|.+...|+++|+.+..+..
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            1111211   000 00   0123567899999999999999999998873

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=89.60  E-value=19  Score=37.68  Aligned_cols=100  Identities=12%  Similarity=0.100  Sum_probs=56.5

Q ss_pred             CCeEEEEEcCC---CCEEEEEeC----C----CcEEEEECCCC-------eEE-EEec-ccCCCeEEEEEcCCCCEEEEE
Q 005473          556 SKVESCHFSPD---GKLLATGGH----D----KKAVLWCTESF-------TVK-STLE-EHTQWITDVRFSPSLSRLATS  615 (695)
Q Consensus       556 ~~V~~v~fspd---g~~LaSgs~----D----g~V~IWDl~t~-------~~~-~~l~-~H~~~V~~v~~spdg~~LaTg  615 (695)
                      .....|+|+|+   +..|+.+..    +    ..|..|+....       +.+ ..+. +.......|+|.|+|.++++.
T Consensus        73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~  152 (354)
T 3a9g_A           73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT  152 (354)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred             CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence            45789999997   555554433    3    56777776543       111 1122 111234679999999877764


Q ss_pred             eC-------------CCeEEEEECCCC--------CeeEEEEecCCCCeEEEEEec-CCCeEEEE
Q 005473          616 SA-------------DRTVRVWDTENP--------DYSLRTFTGHSTTVMSLDFHP-SKEDLLCS  658 (695)
Q Consensus       616 s~-------------DgtIrvWDl~t~--------~~~l~~~~gh~~~V~sl~fsp-dg~~llaS  658 (695)
                      +.             .|.|.-+|.+..        .. .....+|. ....++|+| ++. |+++
T Consensus       153 G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~-~i~a~G~r-np~Gla~d~~~g~-l~v~  214 (354)
T 3a9g_A          153 GDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNS-PIWSYGHR-NPQGIDWHRASGV-MVAT  214 (354)
T ss_dssp             CCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTC-CEEEECCS-CCCEEEECTTTCC-EEEE
T ss_pred             CCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCC-cEEEEccC-CcceEEEeCCCCC-EEEE
Confidence            42             245666665532        11 12223443 356899999 555 5544

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=89.48  E-value=5.2  Score=40.33  Aligned_cols=106  Identities=11%  Similarity=0.093  Sum_probs=57.4

Q ss_pred             CCCEEEEEeC---------CCcEEEEECCCCeEEEEec--ccCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCC
Q 005473          566 DGKLLATGGH---------DKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENP  629 (695)
Q Consensus       566 dg~~LaSgs~---------Dg~V~IWDl~t~~~~~~l~--~H~~~V~~v~~spdg~~LaTgs~D-----gtIrvWDl~t~  629 (695)
                      ++++++.|+.         -..+.+||..+.+-...-.  ........+.+  ++.+++.|+.+     ..|.+||+.+.
T Consensus       149 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~  226 (306)
T 3ii7_A          149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLN  226 (306)
T ss_dssp             TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred             CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence            5666666654         2458899998765433211  11111122222  55677777653     35899999875


Q ss_pred             CeeE-EEEecCCCCeEEEEEecCCCeEEEEEeCC-----CcEEEEECCCCeEE
Q 005473          630 DYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCA  676 (695)
Q Consensus       630 ~~~l-~~~~gh~~~V~sl~fspdg~~llaSgs~D-----g~IriWDl~tg~~v  676 (695)
                      .... ..+........++.+  + ..+++.|+.+     ..|.+||+.+.+..
T Consensus       227 ~W~~~~~~p~~r~~~~~~~~--~-~~i~v~GG~~~~~~~~~~~~yd~~~~~W~  276 (306)
T 3ii7_A          227 EWKMVSPMPWKGVTVKCAAV--G-SIVYVLAGFQGVGRLGHILEYNTETDKWV  276 (306)
T ss_dssp             EEEECCCCSCCBSCCEEEEE--T-TEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred             cEEECCCCCCCccceeEEEE--C-CEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence            4311 111111112222333  3 3477788744     57899999887543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=88.54  E-value=5.1  Score=41.98  Aligned_cols=73  Identities=10%  Similarity=0.140  Sum_probs=48.4

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-eEEEEe---cCCCCeEEEEEecC---CCeEEEEEeCC-----CcE
Q 005473          598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFT---GHSTTVMSLDFHPS---KEDLLCSCDNN-----SEI  665 (695)
Q Consensus       598 ~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~-~l~~~~---gh~~~V~sl~fspd---g~~llaSgs~D-----g~I  665 (695)
                      .....|+|.|+|+++++ ..++.|++++  .+.. .+..+.   ........|+|+|+   +..++++...+     +.|
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            35679999999986555 5679999998  3332 122111   12356889999998   55566665543     678


Q ss_pred             EEEECCCC
Q 005473          666 RYWSINNG  673 (695)
Q Consensus       666 riWDl~tg  673 (695)
                      ..|+...+
T Consensus       108 ~r~~~~~~  115 (352)
T 2ism_A          108 VRLRHLGE  115 (352)
T ss_dssp             EEEEECSS
T ss_pred             EEEEeCCC
Confidence            88888754

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=87.88  E-value=5  Score=40.65  Aligned_cols=106  Identities=8%  Similarity=0.123  Sum_probs=57.1

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCeEEEE--ecccCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCCeeE
Q 005473          566 DGKLLATGGHD-----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYSL  633 (695)
Q Consensus       566 dg~~LaSgs~D-----g~V~IWDl~t~~~~~~--l~~H~~~V~~v~~spdg~~LaTgs~D-----gtIrvWDl~t~~~~l  633 (695)
                      ++++++.|+.+     ..+.+||..+.+-...  +........++.+  ++.+++.|+.+     ..+.+||+.+.....
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  198 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM  198 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence            56777776643     4688899887654322  1111111222333  56677777654     458999998754311


Q ss_pred             -EEEecCCCCeEEEEEecCCCeEEEEEeCC-----CcEEEEECCCCeEE
Q 005473          634 -RTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCA  676 (695)
Q Consensus       634 -~~~~gh~~~V~sl~fspdg~~llaSgs~D-----g~IriWDl~tg~~v  676 (695)
                       ..+........++.+  ++ .+++.|+.+     ..|.+||+.+.+..
T Consensus       199 ~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~  244 (308)
T 1zgk_A          199 ITAMNTIRSGAGVCVL--HN-CIYAAGGYDGQDQLNSVERYDVETETWT  244 (308)
T ss_dssp             CCCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             CCCCCCccccceEEEE--CC-EEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence             111111111122222  33 477777754     56999999876543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=87.83  E-value=8.4  Score=39.02  Aligned_cols=109  Identities=11%  Similarity=0.120  Sum_probs=58.7

Q ss_pred             CCCEEEEEeC-C-----CcEEEEECCCCeEEEEe--cccCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCCee
Q 005473          566 DGKLLATGGH-D-----KKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTENPDYS  632 (695)
Q Consensus       566 dg~~LaSgs~-D-----g~V~IWDl~t~~~~~~l--~~H~~~V~~v~~spdg~~LaTgs~Dg-----tIrvWDl~t~~~~  632 (695)
                      ++++++.|+. +     ..|.+||..+.+-...-  ........++.+  ++.+++.|+.++     .+.+||+.+....
T Consensus       148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  225 (315)
T 4asc_A          148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWA  225 (315)
T ss_dssp             TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred             CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence            5667777775 2     46889998876533221  111111222223  567778887654     5889999876542


Q ss_pred             EEEEecCCCCeEEEEEecCCCeEEEEEeCC--------------CcEEEEECCCCeEEEE
Q 005473          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--------------SEIRYWSINNGSCAGV  678 (695)
Q Consensus       633 l~~~~gh~~~V~sl~fspdg~~llaSgs~D--------------g~IriWDl~tg~~v~~  678 (695)
                      ...-......-.+++.. ++ .+++.|+.+              ..|.+||+.+.+....
T Consensus       226 ~~~~~p~~r~~~~~~~~-~~-~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  283 (315)
T 4asc_A          226 PFEAFPQERSSLSLVSL-VG-TLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV  283 (315)
T ss_dssp             EECCCSSCCBSCEEEEE-TT-EEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred             ECCCCCCcccceeEEEE-CC-EEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence            11100111111122222 33 466677653              2478999988866554

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=87.77  E-value=7  Score=39.53  Aligned_cols=107  Identities=12%  Similarity=0.202  Sum_probs=58.6

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCeEEEE--ecccCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCCeeE
Q 005473          566 DGKLLATGGHD-----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYSL  633 (695)
Q Consensus       566 dg~~LaSgs~D-----g~V~IWDl~t~~~~~~--l~~H~~~V~~v~~spdg~~LaTgs~D-----gtIrvWDl~t~~~~l  633 (695)
                      ++++++.|+.+     ..|.+||+.+.+-...  +........++.+  ++.+++.|+.+     ..|.+||+.+.....
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~  245 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTF  245 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEE
Confidence            66777777654     4588999887654322  1111111223333  56677777654     469999998755311


Q ss_pred             -EEEecCCCCeEEEEEecCCCeEEEEEeCC-----CcEEEEECCCCeEEE
Q 005473          634 -RTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAG  677 (695)
Q Consensus       634 -~~~~gh~~~V~sl~fspdg~~llaSgs~D-----g~IriWDl~tg~~v~  677 (695)
                       ..+...... .+++.. ++ .+++.|+.+     ..|.+||+.+.+...
T Consensus       246 ~~~~p~~r~~-~~~~~~-~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  292 (308)
T 1zgk_A          246 VAPMKHRRSA-LGITVH-QG-RIYVLGGYDGHTFLDSVECYDPDTDTWSE  292 (308)
T ss_dssp             CCCCSSCCBS-CEEEEE-TT-EEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred             CCCCCCCccc-eEEEEE-CC-EEEEEcCcCCCcccceEEEEcCCCCEEee
Confidence             111111111 122222 33 477777643     468899998876543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=87.61  E-value=5.7  Score=45.93  Aligned_cols=108  Identities=12%  Similarity=0.158  Sum_probs=62.5

Q ss_pred             CCCEEEEEeCC------CcEEEEECCCCeEEEE--ecccCCCeEEEEEcCCCCEEEEEeCCC--eEEEEECCCCCeeEEE
Q 005473          566 DGKLLATGGHD------KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRT  635 (695)
Q Consensus       566 dg~~LaSgs~D------g~V~IWDl~t~~~~~~--l~~H~~~V~~v~~spdg~~LaTgs~Dg--tIrvWDl~t~~~~l~~  635 (695)
                      ++++++.||.+      ..|.+||..+.+-...  +..... -.+++...++.+++.|+.++  .+.+||+.+.......
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~  529 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT  529 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence            67777777754      3578899887543322  111111 12233324778888887654  6999999876542111


Q ss_pred             ----EecCCCCeEEEEEecCCCeEEEEEeC--C-----CcEEEEECCCCe
Q 005473          636 ----FTGHSTTVMSLDFHPSKEDLLCSCDN--N-----SEIRYWSINNGS  674 (695)
Q Consensus       636 ----~~gh~~~V~sl~fspdg~~llaSgs~--D-----g~IriWDl~tg~  674 (695)
                          +........++.+..+...+++.|+.  +     ..|.+||+.+.+
T Consensus       530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence                11111222345556553457777775  2     458999998876

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=87.36  E-value=13  Score=40.80  Aligned_cols=104  Identities=12%  Similarity=0.040  Sum_probs=58.8

Q ss_pred             CeEEEEEcCCCC-EEEEEeCCCcEEEEECCCC---eEEEEecc---------cCCCeEEEEEcCC----CCEEEEEeC--
Q 005473          557 KVESCHFSPDGK-LLATGGHDKKAVLWCTESF---TVKSTLEE---------HTQWITDVRFSPS----LSRLATSSA--  617 (695)
Q Consensus       557 ~V~~v~fspdg~-~LaSgs~Dg~V~IWDl~t~---~~~~~l~~---------H~~~V~~v~~spd----g~~LaTgs~--  617 (695)
                      .-..|+|.|||. .|+++...|.|++++....   ..+..+..         .......|+|+|+    +.+.++-+.  
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            357899999996 4556677899999975432   12222211         1356789999996    333333221  


Q ss_pred             C----------CeEEEEECCCC---------CeeEEEEe--cCCCCeEEEEEecCCCeEEEEEe
Q 005473          618 D----------RTVRVWDTENP---------DYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCD  660 (695)
Q Consensus       618 D----------gtIrvWDl~t~---------~~~l~~~~--gh~~~V~sl~fspdg~~llaSgs  660 (695)
                      +          ..|.-|.+...         ...+..+.  ........|.|.|||..+|.+|+
T Consensus        95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence            1          13444555321         11222222  11234688999999975554443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=86.76  E-value=18  Score=44.52  Aligned_cols=101  Identities=14%  Similarity=0.048  Sum_probs=65.0

Q ss_pred             CcEEEEECCCCeEEEEeccc-CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCC---
Q 005473          577 KKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK---  652 (695)
Q Consensus       577 g~V~IWDl~t~~~~~~l~~H-~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg---  652 (695)
                      ..|++.+......+..+... ...|.+.+.+.  ..++.++ ++.+.+++++.+......-......|.|+++.|..   
T Consensus       492 ~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~  568 (1158)
T 3ei3_A          492 ASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSN  568 (1158)
T ss_dssp             SCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSST
T ss_pred             CEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCc
Confidence            34777777655556566533 33576666653  4666665 67888888876432221222235689999998643   


Q ss_pred             --CeEEEEEeC-CCcEEEEECCCCeEEEEEe
Q 005473          653 --EDLLCSCDN-NSEIRYWSINNGSCAGVFK  680 (695)
Q Consensus       653 --~~llaSgs~-Dg~IriWDl~tg~~v~~~~  680 (695)
                        ..+++.|.. |++|+|+++.+-+.+....
T Consensus       569 ~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~  599 (1158)
T 3ei3_A          569 GLSPLCAIGLWTDISARILKLPSFELLHKEM  599 (1158)
T ss_dssp             TCCSEEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred             ccccEEEEEECCCCEEEEEECCCCCeEEEEE
Confidence              247777775 9999999998776665443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=86.60  E-value=2.1  Score=42.61  Aligned_cols=99  Identities=12%  Similarity=-0.012  Sum_probs=57.8

Q ss_pred             CCEEEEEeCCCcEEEEECCCCe------EEEEeccc--CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee----EE
Q 005473          567 GKLLATGGHDKKAVLWCTESFT------VKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS----LR  634 (695)
Q Consensus       567 g~~LaSgs~Dg~V~IWDl~t~~------~~~~l~~H--~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~----l~  634 (695)
                      ...|++...| +|++=.+..+.      ....+ ++  =..+.+++|+|++.+.++  .+|.++-.+..+....    ..
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~   79 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA   79 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence            3456666667 66665554433      11222 22  246789999998887666  6777777776442210    01


Q ss_pred             EEecCCC--CeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473          635 TFTGHST--TVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (695)
Q Consensus       635 ~~~gh~~--~V~sl~fspdg~~llaSgs~Dg~IriWDl~t  672 (695)
                      +..+..+  .-.++.|+|+|. |+++  .||.|+-|+-.+
T Consensus        80 t~IG~~Gw~~F~a~~fD~~G~-LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           80 KKIGNGGWNQFQFLFFDPNGY-LYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             EEEECSCGGGCSEEEECTTSC-EEEE--ETTEEEEESCCC
T ss_pred             cEecccccccceEEEECCCCC-EEEe--CCCEEEEeCCCc
Confidence            1111111  137899999987 4444  579998888643

>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1

Probab=86.07  E-value=0.32  Score=41.00  Aligned_cols=38  Identities=21%  Similarity=0.325  Sum_probs=31.1

Q ss_pred             CCcchHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCC
Q 005473            3 QNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTD   41 (695)
Q Consensus         3 ~~~~~~~~~L~~yIydyl~k~~~~~tA~af~~e~~~~~~   41 (695)
                      .+....+ -||--|++||..+|+.+++.+|.+|.+++.+
T Consensus         5 Lt~rQ~e-EL~kaI~~YL~~~~~~~~~~alr~e~~~~~~   42 (88)
T 1uuj_A            5 LSQRQRD-ELNRAIADYLRSNGYEEAYSVFKKEAELDMN   42 (88)
T ss_dssp             CCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred             CCHHHHH-HHHHHHHHHHHhcCcHHHHHHHHHHhcCCCC
Confidence            3334333 5799999999999999999999999988754

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=85.86  E-value=4.8  Score=41.54  Aligned_cols=110  Identities=6%  Similarity=-0.023  Sum_probs=67.0

Q ss_pred             EEEEcCCCCEEEEEeCC--------------CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEe----CCCeE
Q 005473          560 SCHFSPDGKLLATGGHD--------------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----ADRTV  621 (695)
Q Consensus       560 ~v~fspdg~~LaSgs~D--------------g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs----~DgtI  621 (695)
                      +--|+++|.+|+-+...              ..|+..+++..+.......   .  +..|++++..|+-..    .+..|
T Consensus        57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~---~--~~~~s~~g~~Iy~~~~~~~~~~~I  131 (302)
T 3s25_A           57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD---P--CIYASLIGNYIYYLHYDTQTATSL  131 (302)
T ss_dssp             EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS---C--EEEEEEETTEEEEEEESSSSCEEE
T ss_pred             eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC---C--ccEEEEeCCEEEEEeecCCCCceE
Confidence            34457788887766543              3677778776654332221   1  235677888887665    23456


Q ss_pred             EEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  680 (695)
Q Consensus       622 rvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~  680 (695)
                      +.-+++...  ...+..+..    ..|+++++.|+.+...+..|++.++..+.....+.
T Consensus       132 y~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~  184 (302)
T 3s25_A          132 YRIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD  184 (302)
T ss_dssp             EEEETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC
T ss_pred             EEEECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC
Confidence            666666433  344444432    45677888888776657889999987765444443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=85.30  E-value=6.5  Score=39.95  Aligned_cols=109  Identities=12%  Similarity=0.192  Sum_probs=58.7

Q ss_pred             CCCEEEEEeCC------CcEEEEECCCCeEEEEe--cccCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCCee
Q 005473          566 DGKLLATGGHD------KKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYS  632 (695)
Q Consensus       566 dg~~LaSgs~D------g~V~IWDl~t~~~~~~l--~~H~~~V~~v~~spdg~~LaTgs~D-----gtIrvWDl~t~~~~  632 (695)
                      ++++++.|+.+      ..|.+||..+.+-...-  ........++.+  ++.+++.|+.+     ..|.+||+.+....
T Consensus       158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  235 (318)
T 2woz_A          158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWE  235 (318)
T ss_dssp             TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred             CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence            66666666642      35899999876543321  111111222222  46677777653     35788999876542


Q ss_pred             E-EEEecCCCCeEEEEEecCCCeEEEEEeCC--------------CcEEEEECCCCeEEEEE
Q 005473          633 L-RTFTGHSTTVMSLDFHPSKEDLLCSCDNN--------------SEIRYWSINNGSCAGVF  679 (695)
Q Consensus       633 l-~~~~gh~~~V~sl~fspdg~~llaSgs~D--------------g~IriWDl~tg~~v~~~  679 (695)
                      . ..+....... +++.. ++ .+++.|+.+              ..|.+||+.+.+.....
T Consensus       236 ~~~~~p~~r~~~-~~~~~-~~-~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~  294 (318)
T 2woz_A          236 VMTEFPQERSSI-SLVSL-AG-SLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGML  294 (318)
T ss_dssp             ECCCCSSCCBSC-EEEEE-TT-EEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEEE
T ss_pred             ECCCCCCcccce-EEEEE-CC-EEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhhc
Confidence            1 1111111111 22222 33 466677653              46889999988766553

>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A

Probab=84.89  E-value=0.6  Score=39.55  Aligned_cols=32  Identities=25%  Similarity=0.424  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHhcChHHHHHHHHhhcCCCCCC
Q 005473           11 MLDVYIYDYLLKRKLHASAKAFQTEGKVSTDP   42 (695)
Q Consensus        11 ~L~~yIydyl~k~~~~~tA~af~~e~~~~~~~   42 (695)
                      -+|--||-||..+|+..+|-+|.+|++|...+
T Consensus         7 evN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~   38 (90)
T 2xtc_A            7 EVNFLVYRYLQESGFSHSAFTFGIESHISQSN   38 (90)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTTGGGSC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhcCCccc
Confidence            48889999999999999999999999886543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=84.14  E-value=12  Score=37.80  Aligned_cols=106  Identities=11%  Similarity=0.153  Sum_probs=55.9

Q ss_pred             CCCEEEEEeCC--------CcEEEEECCCCeEEEE--ecccCCCeEEEEEcCCCCEEEEEeC-C-----CeEEEEECCCC
Q 005473          566 DGKLLATGGHD--------KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSA-D-----RTVRVWDTENP  629 (695)
Q Consensus       566 dg~~LaSgs~D--------g~V~IWDl~t~~~~~~--l~~H~~~V~~v~~spdg~~LaTgs~-D-----gtIrvWDl~t~  629 (695)
                      ++++++.|+.+        ..+.+||..+.+-...  +........++.  -++.+++.|+. +     ..+.+||+.+.
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~  175 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKF  175 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence            56666666632        4588999987653321  111111112222  34567777765 2     36899999875


Q ss_pred             CeeE-EEEecCCCCeEEEEEecCCCeEEEEEeCCC-----cEEEEECCCCeEE
Q 005473          630 DYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCA  676 (695)
Q Consensus       630 ~~~l-~~~~gh~~~V~sl~fspdg~~llaSgs~Dg-----~IriWDl~tg~~v  676 (695)
                      .... ..+.. ...-.+++.. ++ .+++.|+.++     .|.+||+.+.+..
T Consensus       176 ~W~~~~~~p~-~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~  225 (315)
T 4asc_A          176 EWKELAPMQT-ARSLFGATVH-DG-RIIVAAGVTDTGLTSSAEVYSITDNKWA  225 (315)
T ss_dssp             EEEECCCCSS-CCBSCEEEEE-TT-EEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred             eEEECCCCCC-chhceEEEEE-CC-EEEEEeccCCCCccceEEEEECCCCeEE
Confidence            4311 11111 1111122222 44 4666777554     5889999876543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=83.72  E-value=16  Score=42.14  Aligned_cols=111  Identities=13%  Similarity=0.181  Sum_probs=62.9

Q ss_pred             CCCCEEEEEeCCC--cEEEEECCCCeEEEEec-----ccCCCeEEEEEcCC-CCEEEEEeC--C-----CeEEEEECCCC
Q 005473          565 PDGKLLATGGHDK--KAVLWCTESFTVKSTLE-----EHTQWITDVRFSPS-LSRLATSSA--D-----RTVRVWDTENP  629 (695)
Q Consensus       565 pdg~~LaSgs~Dg--~V~IWDl~t~~~~~~l~-----~H~~~V~~v~~spd-g~~LaTgs~--D-----gtIrvWDl~t~  629 (695)
                      .++++++.||.++  .|.+||..+..-...-.     .......++.+..+ +.+++.|+.  +     ..|.+||+.+.
T Consensus       499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~  578 (695)
T 2zwa_A          499 PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE  578 (695)
T ss_dssp             TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred             cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence            3788888888654  68999998765432211     11122233555554 567777765  2     35899999876


Q ss_pred             C------ee-EEEEecCCCCeEEEEEecCCCeEEEEEeC--------CCcEEEEECCCCeEE
Q 005473          630 D------YS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDN--------NSEIRYWSINNGSCA  676 (695)
Q Consensus       630 ~------~~-l~~~~gh~~~V~sl~fspdg~~llaSgs~--------Dg~IriWDl~tg~~v  676 (695)
                      .      .. +.........-.+++...++. +++.|+.        ...|.+||+.+.+..
T Consensus       579 ~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          579 NATEPITVIKKLQHPLFQRYGSQIKYITPRK-LLIVGGTSPSGLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             CSSCCEEEEEEEECGGGCCBSCEEEEEETTE-EEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred             ccccceEEEEcCCCCCCCcccceEEEeCCCE-EEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence            6      21 111111111112233333344 6667764        346999999887654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=82.07  E-value=5.2  Score=45.10  Aligned_cols=94  Identities=7%  Similarity=0.010  Sum_probs=63.8

Q ss_pred             cEEEEECCC----CeEEEEecccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCC-----------CCeeEEEEecCCC
Q 005473          578 KAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTEN-----------PDYSLRTFTGHST  641 (695)
Q Consensus       578 ~V~IWDl~t----~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~-DgtIrvWDl~t-----------~~~~l~~~~gh~~  641 (695)
                      .|.|.|.+.    +..+..+..-......|.++|||++++.++. +.+|.|+|++.           .+.++..-..-.-
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl  378 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL  378 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence            477888765    2222222223445568899999999877764 78999999873           1112222222334


Q ss_pred             CeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473          642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (695)
Q Consensus       642 ~V~sl~fspdg~~llaSgs~Dg~IriWDl~t  672 (695)
                      .....+|.++| ..+.+.--|..|..|++..
T Consensus       379 GPlHt~Fd~~G-~aYTtlfidSqvvkWni~~  408 (638)
T 3sbq_A          379 GPLHTTFDGRG-NAYTTLFIDSQVVKWNMEE  408 (638)
T ss_dssp             CEEEEEECSSS-EEEEEETTTTEEEEEEHHH
T ss_pred             cccEEEECCCC-ceEeeeeecceEEEEeccH
Confidence            57889999998 5676777999999999964

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=81.78  E-value=17  Score=43.67  Aligned_cols=38  Identities=13%  Similarity=0.343  Sum_probs=30.5

Q ss_pred             CeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473          642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  680 (695)
Q Consensus       642 ~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~  680 (695)
                      .|.+++..++.. ++++-+.|+++|||++.+++|+.+..
T Consensus       237 ~~~~~~~~~~~~-~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYN-VLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTT-EEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCc-EEEEEECCCEEEEEECCCCCeEeeec
Confidence            356677777766 56688899999999999999998764

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=80.24  E-value=39  Score=34.51  Aligned_cols=51  Identities=12%  Similarity=0.081  Sum_probs=28.1

Q ss_pred             CCCEEEEEeC-C---------CcEEEEECCCCeEEEEec---ccCCCeEEEEEcCCCCEEEEEeCC
Q 005473          566 DGKLLATGGH-D---------KKAVLWCTESFTVKSTLE---EHTQWITDVRFSPSLSRLATSSAD  618 (695)
Q Consensus       566 dg~~LaSgs~-D---------g~V~IWDl~t~~~~~~l~---~H~~~V~~v~~spdg~~LaTgs~D  618 (695)
                      ++++++.|+. +         ..|.+||..+.+-...-.   .......++.  .++.+++.|+.+
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~  128 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN  128 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence            5666666665 2         468899998765432211   1111122222  456777888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	695
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-20
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-16
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-15
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-19
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-17
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-16
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-14
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-14
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-11
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-13
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-12
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-12
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-11
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-10
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-11
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-11
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-11
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-11
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.004
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	8e-09
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-06
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.001
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	3e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	6e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.003

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.8 bits (221), Expect = 4e-20
 Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 2/126 (1%)

Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD 602
           +         +  +  E+      G  L +G  DK   +W   +     TL  H  W+  
Sbjct: 193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG 252

Query: 603 VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662
           V F      + + + D+T+RVWD +N    ++T   H   V SLDFH +    + +   +
Sbjct: 253 VLFHSGGKFILSCADDKTLRVWDYKNKR-CMKTLNAHEHFVTSLDFHKT-APYVVTGSVD 310

Query: 663 SEIRYW 668
             ++ W
Sbjct: 311 QTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.0 bits (193), Expect = 2e-16
 Identities = 20/82 (24%), Positives = 35/82 (42%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
           T      +    + V    F   GK + +   DK   +W  ++     TL  H  ++T +
Sbjct: 236 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 295

Query: 604 RFSPSLSRLATSSADRTVRVWD 625
            F  +   + T S D+TV+VW+
Sbjct: 296 DFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.9 bits (185), Expect = 2e-15
 Identities = 32/168 (19%), Positives = 55/168 (32%), Gaps = 22/168 (13%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
           T    +        V     + DG L+A+  +D+   +W   +   K+ L EH   +  +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191

Query: 604 RF--------------------SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV 643
            +                          L + S D+T+++WD       L T  GH   V
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDNWV 250

Query: 644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV 691
             + FH      + SC ++  +R W   N  C            S+  
Sbjct: 251 RGVLFHSG-GKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF 297

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.9 bits (159), Expect = 3e-12
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649
           K  L  H   +T V F P  S + ++S D T++VWD E  D+  RT  GH+ +V  + F 
Sbjct: 10  KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-ERTLKGHTDSVQDISFD 68

Query: 650 PSKEDLLCSCDNNSEIRYW 668
            S + L     + +   + 
Sbjct: 69  HSGKLLASCSADMTIKLWD 87

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.5 bits (158), Expect = 4e-12
 Identities = 30/178 (16%), Positives = 59/178 (33%), Gaps = 44/178 (24%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV----------- 603
            S V    F P   ++ +   D    +W  E+   + TL+ HT  + D+           
Sbjct: 17  RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS 76

Query: 604 -------------------------------RFSPSLSRLATSSADRTVRVWDTENPDYS 632
                                             P+   + ++S D+T+++W+ +     
Sbjct: 77  CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC- 135

Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVR 690
           ++TFTGH   V  +  +     L+ SC N+  +R W +    C    +        + 
Sbjct: 136 VKTFTGHREWVRMVRPNQD-GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS 192

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.9 bits (146), Expect = 1e-10
 Identities = 28/148 (18%), Positives = 48/148 (32%), Gaps = 20/148 (13%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
               P+G  + +   DK   +W  ++     T   H +W+  VR +   + +A+ S D+T
Sbjct: 107 VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 166

Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-------------------DLLCSCDN 661
           VRVW     +        H   V  + + P                        L S   
Sbjct: 167 VRVWVVATKE-CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 225

Query: 662 NSEIRYWSINNGSCAGVFKNFFESFVSV 689
           +  I+ W ++ G C             V
Sbjct: 226 DKTIKMWDVSTGMCLMTLVGHDNWVRGV 253

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 88.6 bits (218), Expect = 1e-19
 Identities = 29/128 (22%), Positives = 40/128 (31%), Gaps = 4/128 (3%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--IT 601
                Q      S + +  F P+G   ATG  D    L+   +     T         IT
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274

Query: 602 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661
            V FS S   L     D    VWD    D       GH   V  L         + +   
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKAD-RAGVLAGHDNRVSCLGVTDD-GMAVATGSW 332

Query: 662 NSEIRYWS 669
           +S ++ W+
Sbjct: 333 DSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.2 bits (183), Expect = 3e-15
 Identities = 31/135 (22%), Positives = 48/135 (35%), Gaps = 2/135 (1%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
           V S   +PD +L  +G  D  A LW       + T   H   I  + F P+ +  AT S 
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246

Query: 618 DRTVRV-WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
           D T R+     + +    +       + S+ F  S   LL +  ++     W       A
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKS-GRLLLAGYDDFNCNVWDALKADRA 305

Query: 677 GVFKNFFESFVSVRV 691
           GV          + V
Sbjct: 306 GVLAGHDNRVSCLGV 320

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.0 bits (128), Expect = 3e-08
 Identities = 19/117 (16%), Positives = 47/117 (40%), Gaps = 3/117 (2%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
            +K+ + H+  D +LL +   D K ++W + +      +   + W+    ++PS + +A 
Sbjct: 55  LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVAC 114

Query: 615 SSADRTVRVWDTENPDYS---LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
              D    +++ +  + +    R   GH+  +    F    + +  S D    +   
Sbjct: 115 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI 171

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.0 bits (128), Expect = 3e-08
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 1/82 (1%)

Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646
              + TL  H   I  + +      L ++S D  + +WD+   +  +      S+ VM+ 
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTC 103

Query: 647 DFHPSKEDLLCSCDNNSEIRYW 668
            + PS   + C   +N    Y 
Sbjct: 104 AYAPSGNYVACGGLDNICSIYN 125

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.7 bits (91), Expect = 8e-04
 Identities = 12/92 (13%), Positives = 28/92 (30%), Gaps = 4/92 (4%)

Query: 600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659
           I D R + + + L+  + +               RT  GH   + ++ +      LL S 
Sbjct: 18  IRDARKACADATLSQITNNIDPVGRIQMRT---RRTLRGHLAKIYAMHWGTD-SRLLVSA 73

Query: 660 DNNSEIRYWSINNGSCAGVFKNFFESFVSVRV 691
             + ++  W     +            ++   
Sbjct: 74  SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.7 bits (197), Expect = 7e-17
 Identities = 16/120 (13%), Positives = 36/120 (30%), Gaps = 2/120 (1%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATS 615
           +    ++ D   +A   ++ +  ++      +     L+EH   +T V ++P  +R+ T 
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675
             DR   VW  +   +                     E        +  I        + 
Sbjct: 70  GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.7 bits (166), Expect = 6e-13
 Identities = 9/81 (11%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKED 654
             + I+   ++   +++A    +  V +++     +  +     H+  V  +D+ P   +
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSN 64

Query: 655 LLCSCDNNSEIRYWSINNGSC 675
            + +C  +     W++   + 
Sbjct: 65  RIVTCGTDRNAYVWTLKGRTW 85

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.7 bits (140), Expect = 8e-10
 Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 6/117 (5%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
             F  +  L+A  GHD   VL+  +S   K +                 +R    + D+ 
Sbjct: 249 VTFITESSLVAA-GHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 307

Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHP---SKEDLLCSCDNNSEIRYWSINNGS 674
                +      L   + H  +V  +       +K    C+   +  +  W + +  
Sbjct: 308 ASSEGSAAAGAGL--DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.4 bits (108), Expect = 7e-06
 Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 5/86 (5%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP----SLS 610
               +                DKKA    + +         H   ++ +          S
Sbjct: 284 LDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG-AGLDSLHKNSVSQISVLSGGKAKCS 342

Query: 611 RLATSSADRTVRVWDTENPDYSLRTF 636
           +  T+  D  + +WD  + + +L+  
Sbjct: 343 QFCTTGMDGGMSIWDVRSLESALKDL 368

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.8 bits (104), Expect = 2e-05
 Identities = 22/136 (16%), Positives = 48/136 (35%), Gaps = 4/136 (2%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWIT 601
            + +   +     +V    ++PD   + T G D+ A +W  +  T K    +    +   
Sbjct: 40  KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR 99

Query: 602 DVRFSPSLSRLATSSADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659
            VR++P+  + A  S  R + +     EN  +  +       + +          LL + 
Sbjct: 100 CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 159

Query: 660 DNNSEIRYWSINNGSC 675
             + + R +S      
Sbjct: 160 SCDFKCRIFSAYIKEV 175

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.8 bits (195), Expect = 2e-16
 Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 18/142 (12%)

Query: 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS------------TL 593
           +E +        V S  F+ DG+ + +G  D+   LW  ++   KS            T 
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 304

Query: 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS-- 651
             H  ++  V  + +   + + S DR V  WD ++ +  L    GH  +V+S+       
Sbjct: 305 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN-PLLMLQGHRNSVISVAVANGSS 363

Query: 652 ---KEDLLCSCDNNSEIRYWSI 670
              + ++  +   + + R W  
Sbjct: 364 LGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.0 bits (172), Expect = 1e-13
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV------RFSPS 608
              V S   + + + + +G  D+  + W  +S      L+ H   +  V         P 
Sbjct: 308 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE 367

Query: 609 LSRLATSSADRTVRVWDTE 627
            +  AT S D   R+W  +
Sbjct: 368 YNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.3 bits (165), Expect = 8e-13
 Identities = 30/151 (19%), Positives = 62/151 (41%), Gaps = 19/151 (12%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLA 613
                DGK +A G  D+   +W +E+  +   L+        H   +  V F+     + 
Sbjct: 211 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 270

Query: 614 TSSADRTVRVWDTENPD-----------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662
           + S DR+V++W+ +N +               T+ GH   V+S+    + ++ + S   +
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN-DEYILSGSKD 329

Query: 663 SEIRYWSINNGSCAGVFKNFFESFVSVRVVQ 693
             + +W   +G+   + +    S +SV V  
Sbjct: 330 RGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 360

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.6 bits (119), Expect = 4e-07
 Identities = 35/139 (25%), Positives = 52/139 (37%), Gaps = 21/139 (15%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE------------------H 596
           TS V    FS DG+ LATG  +K   ++     ++ + L +                   
Sbjct: 62  TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 120

Query: 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656
             +I  V FSP    LAT + DR +R+WD EN               +    +    D L
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI--VMILQGHEQDIYSLDYFPSGDKL 178

Query: 657 CSCDNNSEIRYWSINNGSC 675
            S   +  +R W +  G C
Sbjct: 179 VSGSGDRTVRIWDLRTGQC 197

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 2e-05
 Identities = 40/172 (23%), Positives = 61/172 (35%), Gaps = 49/172 (28%)

Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF------ 605
           P+S   + S  FSPDGK LATG  D+   +W  E+  +   L+ H Q I  + +      
Sbjct: 118 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK 177

Query: 606 ------------------------------------SPSLSRLATSSADRTVRVWDTENP 629
                                                     +A  S DR VRVWD+E  
Sbjct: 178 LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 237

Query: 630 ------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675
                 D    + TGH  +V S+ F       + S   +  ++ W++ N + 
Sbjct: 238 FLVERLDSENESGTGHKDSVYSVVFTRD-GQSVVSGSLDRSVKLWNLQNANN 288

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.4 bits (103), Expect = 3e-05
 Identities = 16/121 (13%), Positives = 38/121 (31%), Gaps = 24/121 (19%)

Query: 570 LATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
                 +   +L+           +  +L+ HT  +  V+FS     LAT   ++T +V+
Sbjct: 31  ALKKQTNDYYILYNPALPREIDVELHKSLD-HTSVVCCVKFSNDGEYLATGC-NKTTQVY 88

Query: 625 DTENP-----------------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
              +                  + +  +       + S+ F P  + L    ++     +
Sbjct: 89  RVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIW 148

Query: 668 W 668
            
Sbjct: 149 D 149

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 13/109 (11%), Positives = 32/109 (29%), Gaps = 8/109 (7%)

Query: 591 STLEEHTQWITDVRFSPSLSR---LATSSADRTVRVWDTENP---DYSLRTFTGHSTTVM 644
           +    H++ I                    +    +++   P   D  L     H++ V 
Sbjct: 7   NQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVC 66

Query: 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQ 693
            + F    E L   C+     + + +++GS      +   +      + 
Sbjct: 67  CVKFSNDGEYLATGCNKT--TQVYRVSDGSLVARLSDDSAANKDPENLN 113

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.8 bits (174), Expect = 4e-14
 Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 2/125 (1%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
            + V +C    +   + TG  DK   ++ + +      L  H   +  ++++     L +
Sbjct: 12  MTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVS 69

Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
            S DRTVRVWD +    +      +ST              + +   ++ +  W +   S
Sbjct: 70  GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 129

Query: 675 CAGVF 679
                
Sbjct: 130 SVPDH 134

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.3 bits (131), Expect = 1e-08
 Identities = 6/90 (6%), Positives = 24/90 (26%)

Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 641
              ++         H   ++ +        +  S ++    +++  +           + 
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD 325

Query: 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
            + S++F           D  S +     +
Sbjct: 326 QIWSVNFKGKTLVAAVEKDGQSFLEILDFS 355

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 1e-08
 Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSS 616
                F     +L +G  + +  ++   S   V + + +    I  V F    + +A   
Sbjct: 285 SAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVE 342

Query: 617 ADRTVRVWD 625
            D    +  
Sbjct: 343 KDGQSFLEI 351

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (174), Expect = 4e-14
 Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 1/66 (1%)

Query: 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619
           S  F+  GK   + G D     W T         +  +  +     S     + T S D+
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDK 328

Query: 620 TVRVWD 625
              V++
Sbjct: 329 KATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (159), Expect = 3e-12
 Identities = 23/120 (19%), Positives = 36/120 (30%), Gaps = 8/120 (6%)

Query: 548 FQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
           FQ    S     S H + DG++       D              +TL  H + +  V  S
Sbjct: 3   FQGAMGSK-PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTIS 60

Query: 607 PSLSRLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662
                + T      V+VWD  +P      S          + S    P    L+   + +
Sbjct: 61  NPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS 119

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (153), Expect = 2e-11
 Identities = 17/115 (14%), Positives = 41/115 (35%), Gaps = 4/115 (3%)

Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
           S++ S  + P G+ LA G       +              H   +  ++F+       ++
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL-HLHESCVLSLKFAYCGKWFVST 283

Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
             D  +  W T  P  +    +  S++V+S D     +  + +   + +   + +
Sbjct: 284 GKDNLLNAWRT--PYGASIFQSKESSSVLSCDISVD-DKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 3e-08
 Identities = 21/126 (16%), Positives = 39/126 (30%), Gaps = 6/126 (4%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPSL 609
              V +   S   + + TGG      +W       KS + +        +I   +  P  
Sbjct: 51  GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109

Query: 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
             L       T+ +WD   P   ++     S              +  SC ++  I  W 
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169

Query: 670 INNGSC 675
           ++N + 
Sbjct: 170 LHNQTL 175

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 4e-04
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLW 582
           +S V SC  S D K + TG  DKKA ++
Sbjct: 306 SSSVLSCDISVDDKYIVTGSGDKKATVY 333

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.6 bits (171), Expect = 1e-13
 Identities = 13/86 (15%), Positives = 32/86 (37%), Gaps = 2/86 (2%)

Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFH 649
             +    +I+D++  PS S L  +S D ++ V+    +  +  L     +   ++  +F 
Sbjct: 6   IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65

Query: 650 PSKEDLLCSCDNNSEIRYWSINNGSC 675
            + +  +       EI    +     
Sbjct: 66  DNTDLQIYVGTVQGEILKVDLIGSPS 91

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.4 bits (134), Expect = 5e-09
 Identities = 15/141 (10%), Positives = 32/141 (22%), Gaps = 3/141 (2%)

Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVR 604
            Q+  A    +      P   LL     D    ++  +       L     +   +    
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 605 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664
           F  +          +   +        S +  T +   +         +D L +   +  
Sbjct: 64  FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123

Query: 665 IRYWSINNGSCAGVFKNFFES 685
           I      N     +      S
Sbjct: 124 IEVIDPRNYGDGVIAVKNLNS 144

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.6 bits (132), Expect = 9e-09
 Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 6/88 (6%)

Query: 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619
           S  FSP  K L T G D     W  ++        +     + V+ + S + L  +++D 
Sbjct: 256 SIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDD 314

Query: 620 TVRVWDTENPDYSLRTFTGHSTTVMSLD 647
           T +     +     +T   +++++  + 
Sbjct: 315 TFKTNAAID-----QTIELNASSIYIIF 337

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (122), Expect = 1e-07
 Identities = 13/132 (9%), Positives = 39/132 (29%), Gaps = 18/132 (13%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTES---------------FTVKSTLEEHTQWITDVRF 605
                + +  A    D +  +   +                  +          +  + F
Sbjct: 200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF 259

Query: 606 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665
           SP    L T+ +D  +  W+ +     ++ F   +     +    S +++LC   ++   
Sbjct: 260 SPRHKFLYTAGSDGIISCWNLQTRK-KIKNFAKFNEDS-VVKIACS-DNILCLATSDDTF 316

Query: 666 RYWSINNGSCAG 677
           +  +  + +   
Sbjct: 317 KTNAAIDQTIEL 328

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 66.2 bits (159), Expect = 2e-12
 Identities = 11/88 (12%), Positives = 28/88 (31%), Gaps = 2/88 (2%)

Query: 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 647
           ++      H + IT +  S     L ++ A+  +  WD      +      H+T +  + 
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 648 FHPSKEDLLCSCDNNSEIRYWSINNGSC 675
                +  L +   +  ++         
Sbjct: 63  TTSKGD--LFTVSWDDHLKVVPAGGSGV 88

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.6 bits (129), Expect = 1e-08
 Identities = 18/122 (14%), Positives = 35/122 (28%), Gaps = 2/122 (1%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLA 613
              + +   S DGK L +   +     W   +        + H   IT ++ +     L 
Sbjct: 12  NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLF 70

Query: 614 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673
           T S D  ++V               +  +   L    S +  +        I  +S    
Sbjct: 71  TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 130

Query: 674 SC 675
           + 
Sbjct: 131 TE 132

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.0 bits (117), Expect = 4e-07
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSAD 618
             +SPD   LATG  D   ++W     +    +    H     +     + + + ++  D
Sbjct: 230 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQD 289

Query: 619 RTVRVWD 625
             ++ W+
Sbjct: 290 SNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.7 bits (106), Expect = 1e-05
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP-DYSLRTFTGHS 640
                    ++   HT  +  V +SP   RLAT S D +V VW+   P D+ +     H+
Sbjct: 209 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHA 268

Query: 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
            + ++     + E  + S   +S I++W++
Sbjct: 269 MSSVNSVIWLN-ETTIVSAGQDSNIKFWNV 297

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (159), Expect = 4e-12
 Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 2/87 (2%)

Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 641
           W          L+ H   +         +R+ + S D T++VW        LRT  GH+ 
Sbjct: 1   WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGK-CLRTLVGHTG 58

Query: 642 TVMSLDFHPSKEDLLCSCDNNSEIRYW 668
            V S     +      +          
Sbjct: 59  GVWSSQMRDNIIISGSTDRTLKVWNAE 85

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (151), Expect = 3e-11
 Identities = 22/131 (16%), Positives = 48/131 (36%), Gaps = 3/131 (2%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
                DG  + +G  D    +W  E+     TL  H    + +    ++  L + +AD T
Sbjct: 181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNI--LVSGNADST 238

Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
           V++WD +     L+T  G +    ++      ++ + +  ++  ++ W +  G       
Sbjct: 239 VKIWDIKTGQC-LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV 297

Query: 681 NFFESFVSVRV 691
                     V
Sbjct: 298 TLESGGSGGVV 308

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 8e-10
 Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 7/128 (5%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
              V +C     G  + +G  D    +W   +     TL  HT  +   +   ++    +
Sbjct: 16  DDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGS 74

Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +     V   +T    ++L   T     +   +          S   ++ +R W I  G 
Sbjct: 75  TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV------VSGSRDATLRVWDIETGQ 128

Query: 675 CAGVFKNF 682
           C  V    
Sbjct: 129 CLHVLMGH 136

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 5e-09
 Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 14/123 (11%)

Query: 560 SCHFSPDGKLLATGGHDKKAVLW---CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS 616
           +        +L +G  D    +W     +         +H   +T ++F+ +     TSS
Sbjct: 220 TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFV--ITSS 277

Query: 617 ADRTVRVWDTENPDYSLRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSE---IRYW 668
            D TV++WD +  +  +R        G    V  +    +K        N +E   +   
Sbjct: 278 DDGTVKLWDLKTGE-FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336

Query: 669 SIN 671
             +
Sbjct: 337 DFD 339

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 1e-08
 Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 6/123 (4%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
                DG+ + +G +D    +W  E+ T   TL+ HT  +  ++F      + + S D +
Sbjct: 141 RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI--HVVSGSLDTS 198

Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
           +RVWD E  +  + T TGH +    ++      ++L S + +S ++ W I  G C    +
Sbjct: 199 IRVWDVETGN-CIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQ 254

Query: 681 NFF 683
              
Sbjct: 255 GPN 257

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.9 bits (148), Expect = 4e-11
 Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 10/84 (11%)

Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
           T+  H + IT +  +P    L + S D  +  W + +          HS  ++SLD   +
Sbjct: 8   TISGHNKGITALTVNP----LISGSYDGRIMEWSSSS------MHQDHSNLIVSLDNSKA 57

Query: 652 KEDLLCSCDNNSEIRYWSINNGSC 675
           +E    S D+  ++   + +    
Sbjct: 58  QEYSSISWDDTLKVNGITKHEFGS 81

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.8 bits (140), Expect = 6e-10
 Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 2/89 (2%)

Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 641
                 +  + +                  +AT S D  + ++  + P   ++    H  
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 259

Query: 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
            V +L +       L S   ++ I+ W++
Sbjct: 260 GVNNLLWET--PSTLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.5 bits (95), Expect = 2e-04
 Identities = 12/114 (10%), Positives = 34/114 (29%), Gaps = 18/114 (15%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
              + +   +P    L +G +D + + W     +  S  ++H+  I  +  S +      
Sbjct: 13  NKGITALTVNP----LISGSYDGRIMEW-----SSSSMHQDHSNLIVSLDNSKA------ 57

Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
                   +   +    +  T     +       +      + + D++  I   
Sbjct: 58  ---QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQS 108

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (92), Expect = 5e-04
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 5/44 (11%)

Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
           L+T +GH+  + +L  +P     L S   +  I  WS ++    
Sbjct: 6   LKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQD 44

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 62.2 bits (149), Expect = 4e-11
 Identities = 22/130 (16%), Positives = 41/130 (31%), Gaps = 3/130 (2%)

Query: 548 FQLIPASTS-KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
           F  +P +          +P G  +    +          S T      EH+   T  + S
Sbjct: 9   FPSLPRTARGTAVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTS 67

Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665
           PS    A+      VR+WDT    + L+T     S  V  + +    + +    +     
Sbjct: 68  PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF 127

Query: 666 RYWSINNGSC 675
            +  + +   
Sbjct: 128 GHVFLFDTGT 137

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 61.8 bits (148), Expect = 6e-11
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSPSLSRLATSSADR 619
             +SPDG  +A+   DK   +W   +  V+ T+   T+     +    +   L + SA+ 
Sbjct: 244 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 303

Query: 620 TVRVWDTE 627
            +   + E
Sbjct: 304 FINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.8 bits (122), Expect = 1e-07
 Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS- 640
                         H+  +  + +SP  +++A++SAD+T+++W+        +T    + 
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV-EKTIPVGTR 281

Query: 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
                L    +K   L S   N  I + 
Sbjct: 282 IEDQQLGIIWTK-QALVSISANGFINFV 308

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (148), Expect = 5e-11
 Identities = 22/116 (18%), Positives = 33/116 (28%), Gaps = 13/116 (11%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
                  +L+ +G  D    LW  E                         R+ + + D  
Sbjct: 182 ACLQYRDRLVVSGSSDNTIRLWDIECGACLRV--LEGHEELVRCIRFDNKRIVSGAYDGK 239

Query: 621 VRVWDTEN--------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
           ++VWD               LRT   HS  V  L F       + S  ++  I  W
Sbjct: 240 IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF---QIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 4e-08
 Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 3/78 (3%)

Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP 650
               E ++ +  +++     ++ +   D T+++WD    +   R  TGH+ +V+ L +  
Sbjct: 9   HCRSETSKGVYCLQYDDQ--KIVSGLRDNTIKIWDKNTLE-CKRILTGHTGSVLCLQYDE 65

Query: 651 SKEDLLCSCDNNSEIRYW 668
                  S          
Sbjct: 66  RVIITGSSDSTVRVWDVN 83

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (122), Expect = 1e-07
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 11/74 (14%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKS---------TLEEHTQWITDVRFSPSLSR 611
                D K + +G +D K  +W   +              TL EH+  +  ++F     +
Sbjct: 222 RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--Q 279

Query: 612 LATSSADRTVRVWD 625
           + +SS D T+ +WD
Sbjct: 280 IVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 8e-07
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 609
            TSK   C    D + + +G  D    +W   +   K  L  HT  +  +++   +
Sbjct: 13  ETSKGVYC-LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV 67

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 4e-06
 Identities = 20/121 (16%), Positives = 40/121 (33%), Gaps = 6/121 (4%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
                D K + +   D+   +W T +     TL  H + I  +++   L  + + S+D T
Sbjct: 142 NVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRL--VVSGSSDNT 199

Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
           +R+WD E                  +         + S   + +I+ W +          
Sbjct: 200 IRLWDIECG----ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA 255

Query: 681 N 681
            
Sbjct: 256 G 256

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 62.2 bits (149), Expect = 6e-11
 Identities = 9/87 (10%), Positives = 22/87 (25%), Gaps = 4/87 (4%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
            +     + +S                         + +  +       + E    +TD+
Sbjct: 265 DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK----TRKVTEVKNNLTDL 320

Query: 604 RFSPSLSRLATSSADRTVRVWDTENPD 630
           R S     +     D  +  +  E P+
Sbjct: 321 RLSADRKTVMVRKDDGKIYTFPLEKPE 347

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 15/116 (12%), Positives = 33/116 (28%), Gaps = 8/116 (6%)

Query: 563 FSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--R 619
           FSP DG L+A     +  +   + ++ +K         I  VR                 
Sbjct: 10  FSPLDGDLIAFVSRGQAFIQDVSGTYVLKVP---EPLRIRYVRRGGDTKVAFIHGTREGD 66

Query: 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675
            + ++D          F  +   V ++    + +  + + D    +          
Sbjct: 67  FLGIYDYRTG--KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPT 120

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.3 bits (144), Expect = 3e-10
 Identities = 13/105 (12%), Positives = 34/105 (32%), Gaps = 13/105 (12%)

Query: 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-----------YSLRTF 636
              +  + H   I  V    S     + S D  ++VWD +  D           +  ++ 
Sbjct: 5   ATANAGKAHDADIFSVSACNSF--TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG 62

Query: 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKN 681
             H   + +++    +  L+ +   + ++ ++ I           
Sbjct: 63  LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIF 107

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (122), Expect = 1e-07
 Identities = 14/136 (10%), Positives = 36/136 (26%), Gaps = 16/136 (11%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE------HTQWITDVRFSPS 608
            + + S           +   D    +W  +    ++  ++      H   +  V    +
Sbjct: 14  DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA 71

Query: 609 LSR-------LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661
           + R       +AT+S    +  +     D   +        ++  D        L    +
Sbjct: 72  IERDAFELCLVATTSFSGDLLFYRITRED-ETKKVIFEKLDLLDSDMKKHSFWALKWGAS 130

Query: 662 NSEIRYWSINNGSCAG 677
           N  +    +      G
Sbjct: 131 NDRLLSHRLVATDVKG 146

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 3e-07
 Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 17/150 (11%)

Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWC----------------TESFTVKSTLEEHTQW 599
           + + S  FSP G LLA                            T S         H+ W
Sbjct: 232 NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW 291

Query: 600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659
           +  + F+ S   L ++  D  +R WD +  +  + T   H   +   +   + ++   S 
Sbjct: 292 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKE-RITTLNMHCDDIEIEEDILAVDEHGDSL 350

Query: 660 DNNSEIRYWSINNGSCAGVFKNFFESFVSV 689
                     +  G  +G+  +  ES   V
Sbjct: 351 AEPGVFDVKFLKKGWRSGMGADLNESLCCV 380

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.9 bits (117), Expect = 7e-07
 Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 21/118 (17%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI----TDVRFSPSLS 610
           +S V S  F+  G+ L + G D K   W  ++    +TL  H   I      +       
Sbjct: 289 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGD 348

Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
            LA         V+D +      R+  G              E L C C + S IR++
Sbjct: 349 SLAEPG------VFDVKFLKKGWRSGMGADLN----------ESLCCVCLDRS-IRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 4e-05
 Identities = 28/162 (17%), Positives = 53/162 (32%), Gaps = 23/162 (14%)

Query: 540 GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL------WCTESFTVKSTL 593
                    +     +    S   S  G L+ATG ++    +          +F  + ++
Sbjct: 169 PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSM 227

Query: 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---------------SLRTFTG 638
             ++  I  V+FSP  S LA +    +         ++               +      
Sbjct: 228 INNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA 287

Query: 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
           HS+ VMSL F+ S E L  +  +   +R+W +          
Sbjct: 288 HSSWVMSLSFNDSGETLCSAGWDGK-LRFWDVKTKERITTLN 328

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.0 bits (138), Expect = 1e-09
 Identities = 19/150 (12%), Positives = 43/150 (28%), Gaps = 15/150 (10%)

Query: 552 PAST-SKVESCHFSPDGKLLATGGHDKKAV----LWCTESFTVKSTLEEHTQWITDVRFS 606
           P++  +      + P    +A        V       ++   V       +  +T V+FS
Sbjct: 13  PSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFS 72

Query: 607 PSLS--RLATSSADRTVRVWDTENPDYS-------LRTFTGHSTTVMSLDFHP-SKEDLL 656
           P      L +      V VW       S          F   +  +  + +    +   +
Sbjct: 73  PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 132

Query: 657 CSCDNNSEIRYWSINNGSCAGVFKNFFESF 686
                ++   + S ++G+  G      +  
Sbjct: 133 VGEGRDNFGVFISWDSGNSLGEVSGHSQRI 162

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.2 bits (123), Expect = 1e-07
 Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV--MSLDFHPSKEDLLCSCDNNSEIRY 667
            + AT  AD T+RVWD       ++ +T     +    +    +    + S   +  + +
Sbjct: 264 QKFATVGADATIRVWDVTTSK-CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322

Query: 668 WSI 670
           + +
Sbjct: 323 YEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.5 bits (121), Expect = 2e-07
 Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 3/68 (4%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS---RLATSSA 617
                D +  AT G D    +W   +           Q + + +     +   R+ + S 
Sbjct: 257 ALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL 316

Query: 618 DRTVRVWD 625
           D T+  ++
Sbjct: 317 DGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 2e-04
 Identities = 23/158 (14%), Positives = 41/158 (25%), Gaps = 12/158 (7%)

Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTES- 586
           +    R  + G        Q     +S V +  FSP    + L +G    K ++W     
Sbjct: 38  KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD 97

Query: 587 -------FTVKSTLEEHTQWITDVRFSPSLSRLA--TSSADRTVRVWDTENPDYSLRTFT 637
                    VKS  +     I+D+ +     RL       D        ++ +       
Sbjct: 98  KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSG 157

Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675
                             +   D+ S + Y        
Sbjct: 158 HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS 195

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 55.5 bits (132), Expect = 8e-09
 Identities = 9/124 (7%), Positives = 29/124 (23%), Gaps = 7/124 (5%)

Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRL-ATSSADRT 620
                + +    +     +    S TV  +              +P        ++    
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63

Query: 621 VRVWDTENPDYS-----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675
           +   D +    +              ++ S    P  +++  + +    +    +     
Sbjct: 64  IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123

Query: 676 AGVF 679
             VF
Sbjct: 124 LEVF 127

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 50.5 bits (119), Expect = 4e-07
 Identities = 9/73 (12%), Positives = 20/73 (27%), Gaps = 2/73 (2%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T    +   SP       G  ++ A  +  +   +             V F     +L  
Sbjct: 251 TELYFTGLRSPKDPNQIYGVLNRLAK-YDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYL 308

Query: 615 SSADRTVRVWDTE 627
                 + V++ +
Sbjct: 309 GGTFNDLAVFNPD 321

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 43.2 bits (100), Expect = 8e-05
 Identities = 14/121 (11%), Positives = 31/121 (25%), Gaps = 5/121 (4%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADR 619
             F  D +  AT       +    ++         + T+       SP          + 
Sbjct: 214 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN- 272

Query: 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
            +  +D +           H  T   + F     D L      +++  ++ +        
Sbjct: 273 RLAKYDLKQRKLIKAANLDH--TYYCVAFDKK-GDKLYLGGTFNDLAVFNPDTLEKVKNI 329

Query: 680 K 680
           K
Sbjct: 330 K 330

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 37.8 bits (86), Expect = 0.004
 Identities = 5/37 (13%), Positives = 11/37 (29%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594
                F   G  L  GG      ++  ++      ++
Sbjct: 294 YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 55.6 bits (132), Expect = 8e-09
 Identities = 17/117 (14%), Positives = 35/117 (29%), Gaps = 4/117 (3%)

Query: 537 AEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH 596
           AE   G+    +Q +    +                    +  V+   ++    +  E  
Sbjct: 240 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-M 298

Query: 597 TQWITDVRFSPSLSRL--ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
              I  +  S     L  A S+ D+T+ + D E+ +  LR+          +     
Sbjct: 299 GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE-LRSVNQLGHGPQVITTADM 354

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.0 bits (116), Expect = 1e-06
 Identities = 13/135 (9%), Positives = 33/135 (24%), Gaps = 7/135 (5%)

Query: 563 FSPDGK--LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
              D +     T     +  L    ++ +K+ L+     +   R S S   L     D  
Sbjct: 26  NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGK 84

Query: 621 VRVWDTENPD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
           V + D    +      ++  +   +   S       +  +       +            
Sbjct: 85  VNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK 144

Query: 677 GVFKNFFESFVSVRV 691
            +      ++     
Sbjct: 145 KIQSTRGMTYDEQEY 159

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.0 bits (116), Expect = 1e-06
 Identities = 16/100 (16%), Positives = 26/100 (26%), Gaps = 7/100 (7%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-----EHTQWITDVRFSPSLSRL 612
           V     S  G+ L   G D K  +         +  E     E     T           
Sbjct: 64  VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYA 123

Query: 613 -ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
            A +       + D E  +   +  +    T    ++HP 
Sbjct: 124 IAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPE 162

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.7 bits (109), Expect = 5e-06
 Identities = 8/68 (11%), Positives = 14/68 (20%), Gaps = 3/68 (4%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
              +P                +  E       +         V  S   S +    A   
Sbjct: 246 TAVNPAKTRAFG--AYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGD 302

Query: 621 VRVWDTEN 628
           +  +D E 
Sbjct: 303 LAAYDAET 310

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 15/155 (9%), Positives = 38/155 (24%), Gaps = 16/155 (10%)

Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----ITDVR 604
           I  +         +P G+   AT    +  V     +      ++  T       +    
Sbjct: 29  IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAA 88

Query: 605 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT----------VMSLDFHPSKED 654
            SP    LA   +   + +   E     +  +   + +          +  L +      
Sbjct: 89  LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSK 148

Query: 655 LLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSV 689
           L     +   +   +        +     E++   
Sbjct: 149 LYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQP 183

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 1/68 (1%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
                + +P   S   S + S DG  +  GG       +  E+   K  ++        +
Sbjct: 269 KNASIKRVPLPHS-YYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSL 327

Query: 604 RFSPSLSR 611
                 +R
Sbjct: 328 ASVRLFTR 335

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.9 bits (105), Expect = 2e-05
 Identities = 12/99 (12%), Positives = 22/99 (22%), Gaps = 5/99 (5%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-----EHTQWITDVRFSPSLSRL 612
           V     S  G+ L   G D +  +    +       E     E     +           
Sbjct: 64  VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYT 123

Query: 613 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
              +                 +  +    TV +  +HP 
Sbjct: 124 IAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPE 162

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.6 bits (91), Expect = 0.001
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 22/130 (16%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA---- 613
           V S     DG +   G   K        ++   + L+        ++  P  S L     
Sbjct: 267 VWSTSHLGDGSISLIGTDPKN---HPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTT 323

Query: 614 ---TSSADRTVRVWDTEN--------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--- 659
               +   ++V V+D +N        P          +  V+  +++   +++  S    
Sbjct: 324 FNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNG 383

Query: 660 -DNNSEIRYW 668
            +++S +   
Sbjct: 384 KNDSSALVVV 393

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 41.4 bits (95), Expect = 3e-04
 Identities = 12/80 (15%), Positives = 21/80 (26%), Gaps = 1/80 (1%)

Query: 614 TSSADRTVRVWDT-ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672
            S   + + VW+       +L         V  +   P K  L         +  + I  
Sbjct: 9   ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68

Query: 673 GSCAGVFKNFFESFVSVRVV 692
              A  F        S+  +
Sbjct: 69  DDGALTFAAESALPGSLTHI 88

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 40.2 bits (92), Expect = 6e-04
 Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 2/48 (4%)

Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTEN 628
             T +  + + +         +  +P   ++    S   TV V DT  
Sbjct: 229 IDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVIDTAT 275

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 10/98 (10%), Positives = 28/98 (28%), Gaps = 2/98 (2%)

Query: 572 TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPD 630
                    +    S  V +T+   +        SP  +++   ++    V + DT   +
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65

Query: 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
                  G S   +++     +  +     +   +   
Sbjct: 66  VIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDT 103

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	695
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.92
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.92
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.91
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.9
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.9
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.9
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.89
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.89
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.88
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.86
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.86
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.86
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.85
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.82
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.82
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.81
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.8
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.79
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.79
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.78
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.78
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.78
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.77
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.77
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.77
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.75
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.74
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.69
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.63
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.62
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.58
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.45
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.45
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.43
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.39
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.38
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.36
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.34
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.31
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.21
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.14
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.09
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.01
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.99
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.97
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.74
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.74
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.72
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.63
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.46
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.33
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.25
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.07
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.93
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.93
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.84
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.83
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.83
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.75
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.71
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.71
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.57
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.54
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.45
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.36
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.26
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.1
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.1
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	96.85
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.85
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.52
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.52
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.0
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	95.74
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	94.97
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	94.83
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.72
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	93.37
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	93.21
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.19
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	92.53
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	92.02
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	91.93
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	91.92
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.73
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	91.44
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	91.32
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	90.77
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	90.58
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	90.08
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	89.97
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	89.56
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	88.62
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	87.31
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	86.93
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	84.65
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	82.53
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	81.76
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	80.67

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.92  E-value=1.5e-23  Score=218.44  Aligned_cols=197  Identities=18%  Similarity=0.343  Sum_probs=158.6

Q ss_pred             CCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCC--------------------------
Q 005473          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPR--------------------------  530 (695)
Q Consensus       477 s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~--------------------------  530 (695)
                      .+...++++.|+|++               +++++|+.|++|++|+........                          
T Consensus        56 ~H~~~v~~~~~sp~g---------------~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~  120 (311)
T d1nr0a1          56 EHSHQTTVAKTSPSG---------------YYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAV  120 (311)
T ss_dssp             CCSSCEEEEEECTTS---------------SEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEE
T ss_pred             CCCCCEEEEEEeCCC---------------CeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccc
Confidence            345677777777765               789999999999999876543110                          


Q ss_pred             ----CccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEE
Q 005473          531 ----DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF  605 (695)
Q Consensus       531 ----~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~-LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~  605 (695)
                          +...++|+...+   ..+..+.+|.+.|++|+|+|++++ |++|+.|+.|+|||++++++...+.+|...|+++.|
T Consensus       121 ~~~~~~~~~v~~~~~~---~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~  197 (311)
T d1nr0a1         121 GEGRERFGHVFLFDTG---TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY  197 (311)
T ss_dssp             ECCSSCSEEEEETTTC---CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEE
T ss_pred             cccccccccccccccc---cccccccccccccccccccccceeeeccccccccccccccccccccccccccccccccccc
Confidence                111122222222   344567889999999999999985 888999999999999999999999999999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCCeeEEEE-------ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEE
Q 005473          606 SPSLSRLATSSADRTVRVWDTENPDYSLRTF-------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV  678 (695)
Q Consensus       606 spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~-------~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~  678 (695)
                      +|++.+|++++.|+.|++||+.++.. +..+       .+|.+.|++++|+|++. +|++|+.||.|+|||+++++++.+
T Consensus       198 ~p~~~~l~~~~~d~~v~~~d~~~~~~-~~~~~~~~~~~~~h~~~V~~~~~s~~~~-~l~tgs~Dg~v~iwd~~t~~~~~~  275 (311)
T d1nr0a1         198 NPDGSLFASTGGDGTIVLYNGVDGTK-TGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKT  275 (311)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCCE-EEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEE
T ss_pred             Cccccccccccccccccccccccccc-cccccccccccccccccccccccCCCCC-EEEEEeCCCeEEEEECCCCcEEEE
Confidence            99999999999999999999998664 4444       36889999999999987 666999999999999999999999


Q ss_pred             EecCC---CcEEEEEEeCC
Q 005473          679 FKNFF---ESFVSVRVVQP  694 (695)
Q Consensus       679 ~~~h~---~~VtsVaf~sP  694 (695)
                      +..|.   ..+.++.| ++
T Consensus       276 l~~~~~~~~~~~~~~~-~~  293 (311)
T d1nr0a1         276 IPVGTRIEDQQLGIIW-TK  293 (311)
T ss_dssp             EECCSSGGGCEEEEEE-CS
T ss_pred             EECCCCccceEEEEEe-cC
Confidence            98664   35566777 54

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=3.9e-23  Score=210.98  Aligned_cols=135  Identities=25%  Similarity=0.350  Sum_probs=115.6

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE-
Q 005473          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF-  636 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~-  636 (695)
                      |.++.+.+.+.++++|+.|+.|++||+++++++.++.+|.+.|++++|+|++.+|++|+.|+.|++||++.... +..+ 
T Consensus       187 ~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~-~~~~~  265 (340)
T d1tbga_         187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE-LMTYS  265 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEEC
T ss_pred             EeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccc-ccccc
Confidence            44455555666777777777777778778888888889999999999999999999999999999999998654 4443 


Q ss_pred             -ecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          637 -TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       637 -~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                       ..|...|.+++|+|++. +|++|+.||.|+|||+.+++++.++.+|.++|++|+| +|+
T Consensus       266 ~~~~~~~i~~~~~s~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~-s~d  323 (340)
T d1tbga_         266 HDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV-TDD  323 (340)
T ss_dssp             CTTCCSCEEEEEECSSSC-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE-CTT
T ss_pred             cccccCceEEEEECCCCC-EEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEE-eCC
Confidence             45667799999999988 6679999999999999999999999999999999999 986

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=7.8e-23  Score=204.84  Aligned_cols=147  Identities=22%  Similarity=0.420  Sum_probs=135.2

Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCC----------------
Q 005473          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL----------------  609 (695)
Q Consensus       546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg----------------  609 (695)
                      ..+..+.+|...+.+++|++++++|++|+.|+.|++|++.+++.+..+.+|...|.++.|+|+.                
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  213 (317)
T d1vyhc1         134 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKS  213 (317)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC----
T ss_pred             eeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeee
Confidence            3456677899999999999999999999999999999999999999999999999999998754                


Q ss_pred             ----CEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCc
Q 005473          610 ----SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFES  685 (695)
Q Consensus       610 ----~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~  685 (695)
                          .++++++.|+.|++||++++. ++..+.+|...|.+++|+|++. +|++|+.||.|+|||+.+++++.++.+|.+.
T Consensus       214 ~~~~~~~~~~~~d~~i~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~  291 (317)
T d1vyhc1         214 GKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYKNKRCMKTLNAHEHF  291 (317)
T ss_dssp             ---CCEEEEEETTSEEEEEETTTTE-EEEEEECCSSCEEEEEECSSSS-CEEEEETTTEEEEECCTTSCCCEEEECCSSC
T ss_pred             ccCCceeEeccCCCEEEEEECCCCc-EEEEEeCCCCCEEEEEECCCCC-EEEEEECCCeEEEEECCCCcEEEEEcCCCCC
Confidence                468999999999999999865 5899999999999999999988 5668999999999999999999999999999


Q ss_pred             EEEEEEeCCC
Q 005473          686 FVSVRVVQPR  695 (695)
Q Consensus       686 VtsVaf~sPd  695 (695)
                      |++|+| +|+
T Consensus       292 V~~~~~-s~~  300 (317)
T d1vyhc1         292 VTSLDF-HKT  300 (317)
T ss_dssp             EEEEEE-CSS
T ss_pred             EEEEEE-cCC
Confidence            999999 985

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=1.4e-22  Score=214.96  Aligned_cols=183  Identities=19%  Similarity=0.231  Sum_probs=155.8

Q ss_pred             CCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCe
Q 005473          479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV  558 (695)
Q Consensus       479 s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V  558 (695)
                      ..+++++.|++++               .++++|+.|+.|++|+..                 +..+..+..+++|.++|
T Consensus         7 ~~pIt~~~~s~dg---------------~~la~~~~~~~i~iw~~~-----------------~~~~~~~~~l~gH~~~V   54 (371)
T d1k8kc_           7 VEPISCHAWNKDR---------------TQIAICPNNHEVHIYEKS-----------------GNKWVQVHELKEHNGQV   54 (371)
T ss_dssp             SSCCCEEEECTTS---------------SEEEEECSSSEEEEEEEE-----------------TTEEEEEEEEECCSSCE
T ss_pred             CCCeEEEEECCCC---------------CEEEEEeCCCEEEEEECC-----------------CCCEEEEEEecCCCCCE
Confidence            3578899999887               688999999999999542                 22445678889999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE--EEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe---eE
Q 005473          559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SL  633 (695)
Q Consensus       559 ~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~--~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~---~l  633 (695)
                      .+|+|+|++++|++|+.|++|+|||+.++...  ..+.+|...|++++|+|+++.|++|+.|++|++|++.....   ..
T Consensus        55 ~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~  134 (371)
T d1k8kc_          55 TGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK  134 (371)
T ss_dssp             EEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE
T ss_pred             EEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccc
Confidence            99999999999999999999999999876644  45578899999999999999999999999999999876542   23


Q ss_pred             EEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC------------------CeEEEEEecCCCcEEEEEEeCCC
Q 005473          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN------------------GSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       634 ~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t------------------g~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ....+|...|++++|+|++. +|++|+.|++|++||+..                  +.++....+|.+.|.+|+| +|+
T Consensus       135 ~~~~~~~~~v~~v~~~p~~~-~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~  212 (371)
T d1k8kc_         135 HIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF-SAN  212 (371)
T ss_dssp             EECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEE-CSS
T ss_pred             cccccccccccccccccccc-ceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEe-ecc
Confidence            44567889999999999988 667999999999999753                  3467777899999999999 985

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.90  E-value=2.1e-22  Score=209.63  Aligned_cols=167  Identities=17%  Similarity=0.218  Sum_probs=144.7

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      +.++.++ ++.|.+|+....                   .....+.+|...|+|++|+|+|++||+|+.||+|+|||+.+
T Consensus        30 ~~l~~~~-~~~v~i~~~~~~-------------------~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~   89 (311)
T d1nr0a1          30 DKIQYCN-GTSVYTVPVGSL-------------------TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQ   89 (311)
T ss_dssp             SEEEEEE-TTEEEEEETTCS-------------------SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSS
T ss_pred             CEEEEEe-CCEEEEEECCCC-------------------ceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeec
Confidence            3445553 567888865432                   23455789999999999999999999999999999999988


Q ss_pred             CeEE--EEecccCCCeEEEEEcCCCCEEEEEeC--CCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC
Q 005473          587 FTVK--STLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (695)
Q Consensus       587 ~~~~--~~l~~H~~~V~~v~~spdg~~LaTgs~--DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D  662 (695)
                      ....  ..+.+|.+.|.+++|+|++.+|++++.  ++.++|||++++.. +..+.+|...|++++|+|+++.+|++|+.|
T Consensus        90 ~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~-~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d  168 (311)
T d1nr0a1          90 TTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS-NGNLTGQARAMNSVDFKPSRPFRIISGSDD  168 (311)
T ss_dssp             TTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB-CBCCCCCSSCEEEEEECSSSSCEEEEEETT
T ss_pred             cccccccccccccCccccccccccccccccccccccccccccccccccc-cccccccccccccccccccceeeecccccc
Confidence            7643  567889999999999999999999876  45699999998664 788899999999999999999889999999


Q ss_pred             CcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          663 SEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       663 g~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      +.|++||+++++++..+.+|..+|++|+| +|+
T Consensus       169 ~~i~i~d~~~~~~~~~~~~~~~~i~~v~~-~p~  200 (311)
T d1nr0a1         169 NTVAIFEGPPFKFKSTFGEHTKFVHSVRY-NPD  200 (311)
T ss_dssp             SCEEEEETTTBEEEEEECCCSSCEEEEEE-CTT
T ss_pred             ccccccccccccccccccccccccccccc-Ccc
Confidence            99999999999999999999999999999 985

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=7.1e-23  Score=218.86  Aligned_cols=178  Identities=19%  Similarity=0.216  Sum_probs=137.8

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005473          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (695)
Q Consensus       506 ~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~  585 (695)
                      ..++++++.|+++++|+............. .................+...++|++|+|++ +||+|+.|++|+|||+.
T Consensus       136 ~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~  213 (393)
T d1sq9a_         136 SHRLVATDVKGTTYIWKFHPFADESNSLTL-NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELS  213 (393)
T ss_dssp             CEEEEEEETTSCEEEEEEESSSSHHHHTTT-CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETT
T ss_pred             ccEEEEEcCCCcEEEEEeecCCcccceeee-eeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeec
Confidence            478899999999999976433211100000 0000001112223334566779999999998 89999999999999999


Q ss_pred             CCeEEEEe------cccCCCeEEEEEcCCCCEEEEEeCCCe---EEEEECCCCCeeEEEE-------------ecCCCCe
Q 005473          586 SFTVKSTL------EEHTQWITDVRFSPSLSRLATSSADRT---VRVWDTENPDYSLRTF-------------TGHSTTV  643 (695)
Q Consensus       586 t~~~~~~l------~~H~~~V~~v~~spdg~~LaTgs~Dgt---IrvWDl~t~~~~l~~~-------------~gh~~~V  643 (695)
                      +++++..+      .+|...|++++|+|++++|++|+.|++   |++||+.++.. +..+             .+|.+.|
T Consensus       214 ~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~-~~~l~~~~~~~~~~~~~~gH~~~V  292 (393)
T d1sq9a_         214 TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER-IGSLSVPTHSSQASLGEFAHSSWV  292 (393)
T ss_dssp             TTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE-EEEECBC--------CCBSBSSCE
T ss_pred             ccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeeccccccee-eeeeccccccccceeeeecccCce
Confidence            98877654      468999999999999999999999874   99999998664 4444             4899999


Q ss_pred             EEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEE
Q 005473          644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFV  687 (695)
Q Consensus       644 ~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~Vt  687 (695)
                      ++|+|+|+++ +|++|+.|++|+|||+++|+++.++++|.+.|.
T Consensus       293 ~~l~fspd~~-~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~  335 (393)
T d1sq9a_         293 MSLSFNDSGE-TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE  335 (393)
T ss_dssp             EEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEEEECCGGGCS
T ss_pred             eeeccCCCCC-eeEEECCCCEEEEEECCCCCEEEEECCcCCccc
Confidence            9999999988 677999999999999999999999999987664

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=3.6e-22  Score=211.60  Aligned_cols=170  Identities=12%  Similarity=0.094  Sum_probs=146.3

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      +++++|+.|++|++|+...                 ....+...+.+|...|++++|+|++++|++|+.|++|+||+++.
T Consensus        64 ~~l~s~s~D~~i~vWd~~~-----------------~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~  126 (371)
T d1k8kc_          64 NRIVTCGTDRNAYVWTLKG-----------------RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ  126 (371)
T ss_dssp             TEEEEEETTSCEEEEEEET-----------------TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEET
T ss_pred             CEEEEEECCCeEEEEeecc-----------------cccccccccccccccccccccccccccceeecccCcceeeeeec
Confidence            7899999999999996532                 23345566778999999999999999999999999999999866


Q ss_pred             CeE----EEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-----------------eeEEEEecCCCCeEE
Q 005473          587 FTV----KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-----------------YSLRTFTGHSTTVMS  645 (695)
Q Consensus       587 ~~~----~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~-----------------~~l~~~~gh~~~V~s  645 (695)
                      ...    ......|...|++++|+|++.+|++|+.|++|++||+....                 ..+....+|...|.+
T Consensus       127 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  206 (371)
T d1k8kc_         127 ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHG  206 (371)
T ss_dssp             TTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEE
T ss_pred             ccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEE
Confidence            442    34456789999999999999999999999999999986432                 235667789999999


Q ss_pred             EEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       646 l~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ++|+|++. +|++++.|+.|++||+.++.++..+.+|..+|++|+| +|+
T Consensus       207 ~~~s~~g~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~f-s~d  254 (371)
T d1k8kc_         207 VCFSANGS-RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTF-ITE  254 (371)
T ss_dssp             EEECSSSS-EEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEE-EET
T ss_pred             EEeecccc-cccccccCCcceEEeeecccceeeeecccccceeeee-cCC
Confidence            99999988 6679999999999999999999999999999999999 775

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.7e-21  Score=203.16  Aligned_cols=185  Identities=19%  Similarity=0.310  Sum_probs=156.0

Q ss_pred             CCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCC
Q 005473          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS  556 (695)
Q Consensus       477 s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~  556 (695)
                      .+...+.++.|++++               ++|++|+ |+.|++|+.......              .........+|.+
T Consensus        49 ~H~~~V~~v~fs~~g---------------~~latg~-dg~V~iWd~~~~~~~--------------~~~~~~~~~~h~~   98 (337)
T d1gxra_          49 NHGEVVCAVTISNPT---------------RHVYTGG-KGCVKVWDISHPGNK--------------SPVSQLDCLNRDN   98 (337)
T ss_dssp             CCSSCCCEEEECSSS---------------SEEEEEC-BSEEEEEETTSTTCC--------------SCSEEEECSCTTS
T ss_pred             CCCCcEEEEEECCCC---------------CEEEEEE-CCEEEEEEccCCccc--------------ceeEEeeecCCCC
Confidence            455677888888766               7899987 899999977543211              1112334568999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCC--CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEE
Q 005473          557 KVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t--~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~  634 (695)
                      .|.+|+|+|++++|++|+.||+|+|||+..  .+....+..|...|.+++|+|++.++++++.|+.|++||+.+++ +..
T Consensus        99 ~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~-~~~  177 (337)
T d1gxra_          99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-LVR  177 (337)
T ss_dssp             BEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEE
T ss_pred             cEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence            999999999999999999999999999874  45667788999999999999999999999999999999999865 478


Q ss_pred             EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       635 ~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ...+|...|.+++|++++. .+++|+.|+.|++||+++++++..+ .|.+.|++|+| +|+
T Consensus       178 ~~~~~~~~v~~l~~s~~~~-~~~~~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~-~~~  235 (337)
T d1gxra_         178 QFQGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGY-CPT  235 (337)
T ss_dssp             EECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEE-CTT
T ss_pred             ccccccccccccccccccc-ccccccccccccccccccceeeccc-ccccceEEEEE-ccc
Confidence            8889999999999999987 5668899999999999999998877 47889999999 885

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.7e-21  Score=200.54  Aligned_cols=144  Identities=22%  Similarity=0.245  Sum_probs=129.8

Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 005473          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (695)
Q Consensus       546 ~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWD  625 (695)
                      .......+|...|.+++|++++.++++|+.|+.|++||+++++.+..+. |.+.|++++|+|++.+|++|+.|+.|++||
T Consensus       174 ~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d  252 (337)
T d1gxra_         174 TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLH  252 (337)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceecccccccccc
Confidence            4456677899999999999999999999999999999999999887764 889999999999999999999999999999


Q ss_pred             CCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       626 l~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ++++..  .....|...|++++|+|+++ +|++|+.||.|++||+.+++++..+. |.+.|++++| +|+
T Consensus       253 ~~~~~~--~~~~~~~~~i~~v~~s~~g~-~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~-s~d  317 (337)
T d1gxra_         253 VNKPDK--YQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDI-SVD  317 (337)
T ss_dssp             TTSSCE--EEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEE-CTT
T ss_pred             cccccc--ccccccccccceEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEE-eCC
Confidence            998664  45678999999999999998 66799999999999999999998875 7789999999 985

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=3.2e-20  Score=194.42  Aligned_cols=198  Identities=21%  Similarity=0.311  Sum_probs=140.0

Q ss_pred             CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCcc------ccccccCCCce------e
Q 005473          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRV------GRSAEVGKGFT------F  545 (695)
Q Consensus       478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~------~~~~d~~~~~~------~  545 (695)
                      +...+..+.|++++               +++++|+.|+.|++|+...........      ..+.-...+..      .
T Consensus       120 ~~~~V~~l~~s~~~---------------~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  184 (388)
T d1erja_         120 SDLYIRSVCFSPDG---------------KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD  184 (388)
T ss_dssp             CCCBEEEEEECTTS---------------SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCCEEEEEECCCC---------------Ccceecccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34467788888876               689999999999999775442111000      00000000000      0


Q ss_pred             eeEEEecCCC----------CCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEe-------cccCCCeEEEEEcC
Q 005473          546 TEFQLIPAST----------SKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSP  607 (695)
Q Consensus       546 ~~v~~l~~H~----------~~V~~v~fsp-dg~~LaSgs~Dg~V~IWDl~t~~~~~~l-------~~H~~~V~~v~~sp  607 (695)
                      ..+..+....          ..+.++.|++ ++++|++|+.|+.|++||++++..+..+       .+|.+.|++++|+|
T Consensus       185 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~  264 (388)
T d1erja_         185 RTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR  264 (388)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT
T ss_pred             eeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECC
Confidence            0111111111          1123344443 6778888888888888888877766554       36889999999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCC-----------eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEE
Q 005473          608 SLSRLATSSADRTVRVWDTENPD-----------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA  676 (695)
Q Consensus       608 dg~~LaTgs~DgtIrvWDl~t~~-----------~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v  676 (695)
                      ++.+|++|+.|+.|++||+++..           .+......|...|++++|+|++. +|++|+.||.|++||+++++++
T Consensus       265 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~~~~  343 (388)
T d1erja_         265 DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKKSGNPL  343 (388)
T ss_dssp             TSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETTTCCEE
T ss_pred             CCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCC-EEEEEeCCCEEEEEECCCCcEE
Confidence            99999999999999999997643           23456678999999999999988 6679999999999999999999


Q ss_pred             EEEecCCCcEEEEEE
Q 005473          677 GVFKNFFESFVSVRV  691 (695)
Q Consensus       677 ~~~~~h~~~VtsVaf  691 (695)
                      .++++|.+.|++++|
T Consensus       344 ~~l~~H~~~V~~~~~  358 (388)
T d1erja_         344 LMLQGHRNSVISVAV  358 (388)
T ss_dssp             EEEECCSSCEEEEEE
T ss_pred             EEEeCCCCCEEEEEE
Confidence            999999999999986

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=1.6e-20  Score=191.29  Aligned_cols=144  Identities=22%  Similarity=0.282  Sum_probs=128.7

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005473          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (695)
Q Consensus       505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl  584 (695)
                      ...++++|+.|+.|++|+....                   ..+..+.+|.+.|++|+|+|++++|++|+.|+.|++||+
T Consensus       195 ~~~~~~~~~~d~~v~i~d~~~~-------------------~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~  255 (340)
T d1tbga_         195 DTRLFVSGACDASAKLWDVREG-------------------MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL  255 (340)
T ss_dssp             TSSEEEEEETTTEEEEEETTTT-------------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             ccceeEEeecCceEEEEECCCC-------------------cEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEee
Confidence            3478899999999999965432                   456778899999999999999999999999999999999


Q ss_pred             CCCeEEEEe--cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC
Q 005473          585 ESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (695)
Q Consensus       585 ~t~~~~~~l--~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D  662 (695)
                      +....+..+  ..|...|.+++|+|++.+|++|+.||+|+|||+.+++ ++.++.+|.+.|++|+|+|++. +|++|+.|
T Consensus       256 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~H~~~V~~l~~s~d~~-~l~s~s~D  333 (340)
T d1tbga_         256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD-RAGVLAGHDNRVSCLGVTDDGM-AVATGSWD  333 (340)
T ss_dssp             TTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSS-CEEEEETT
T ss_pred             cccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCc-EEEEEcCCCCCEEEEEEeCCCC-EEEEEccC
Confidence            998887766  4567789999999999999999999999999999876 4899999999999999999988 56699999


Q ss_pred             CcEEEEE
Q 005473          663 SEIRYWS  669 (695)
Q Consensus       663 g~IriWD  669 (695)
                      |.|+|||
T Consensus       334 g~v~iWd  340 (340)
T d1tbga_         334 SFLKIWN  340 (340)
T ss_dssp             SCEEEEC
T ss_pred             CEEEEeC
Confidence            9999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=3.6e-20  Score=194.06  Aligned_cols=198  Identities=25%  Similarity=0.366  Sum_probs=150.2

Q ss_pred             CCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCC
Q 005473          478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK  557 (695)
Q Consensus       478 ~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~  557 (695)
                      +...++++.|++++               ++|++|+ |++|++|+..++........... ...............|...
T Consensus        61 H~~~V~~l~fs~dg---------------~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  123 (388)
T d1erja_          61 HTSVVCCVKFSNDG---------------EYLATGC-NKTTQVYRVSDGSLVARLSDDSA-ANKDPENLNTSSSPSSDLY  123 (388)
T ss_dssp             CSSCCCEEEECTTS---------------SEEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCB
T ss_pred             CCCcEEEEEECCCC---------------CEEEEEe-CCeEEEEEecccceEeeeccccc-ccccccccccccccCCCCC
Confidence            56677788887766               7889987 89999998765432111100000 0001111122334578899


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 005473          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~  637 (695)
                      |++|+|+|++++|++|+.||.|++||...++.+..+.+|...|.+++|++++..+++++.++.|++||+++... +....
T Consensus       124 V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~  202 (388)
T d1erja_         124 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-SLTLS  202 (388)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEE
T ss_pred             EEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccccc-ccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999997553 55555


Q ss_pred             cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe-------cCCCcEEEEEEeCCC
Q 005473          638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------NFFESFVSVRVVQPR  695 (695)
Q Consensus       638 gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~-------~h~~~VtsVaf~sPd  695 (695)
                      .+ ..+.++.|++....+|++|+.|+.|++||++++..+..+.       +|.+.|++|+| +|+
T Consensus       203 ~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-s~~  265 (388)
T d1erja_         203 IE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF-TRD  265 (388)
T ss_dssp             CS-SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEE-CTT
T ss_pred             cc-cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEE-CCC
Confidence            44 4566666766545588899999999999999988776654       68899999999 885

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=2e-20  Score=194.79  Aligned_cols=188  Identities=14%  Similarity=0.166  Sum_probs=150.1

Q ss_pred             CCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeE
Q 005473          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE  559 (695)
Q Consensus       480 ~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~  559 (695)
                      ..++.+.|+|+..             ..++++|+.|++|++|+...+..           ...........+..|.++|.
T Consensus        64 ~~v~~v~fsP~~~-------------g~~lasgs~Dg~i~iWd~~~~~~-----------~~~~~~~~~~~~~~~~~~v~  119 (325)
T d1pgua1          64 SVVTTVKFSPIKG-------------SQYLCSGDESGKVIVWGWTFDKE-----------SNSVEVNVKSEFQVLAGPIS  119 (325)
T ss_dssp             SCEEEEEECSSTT-------------CCEEEEEETTSEEEEEEEEEEGG-----------GTEEEEEEEEEEECCSSCEE
T ss_pred             CCEEEEEEeeCCC-------------CCEEEEEeCCCCEEEeeecCCcc-----------eeeeecccccccccccCcEE
Confidence            4567777776432             27899999999999996643321           01112223345678999999


Q ss_pred             EEEEcCCCCEEEEEeC--CCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeEE--
Q 005473          560 SCHFSPDGKLLATGGH--DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLR--  634 (695)
Q Consensus       560 ~v~fspdg~~LaSgs~--Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~-~LaTgs~DgtIrvWDl~t~~~~l~--  634 (695)
                      +++|++++++|++++.  |+.+++|+.++++++..+.+|...|.+++|+|++. ++++++.|+.|++||+...+....  
T Consensus       120 ~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~  199 (325)
T d1pgua1         120 DISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR  199 (325)
T ss_dssp             EEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC
T ss_pred             EEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecc
Confidence            9999999999888764  67899999999999999999999999999999876 478899999999999987654222  


Q ss_pred             EEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       635 ~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf  691 (695)
                      ...+|...|++++|+|++..+|++|+.|+.|++||+++++++.++.+|..+|.++.|
T Consensus       200 ~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~  256 (325)
T d1pgua1         200 THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIF  256 (325)
T ss_dssp             SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEE
T ss_pred             cccCCCCccEEeeeccccceeccccccccceeeeeecccccccccccccccccccee
Confidence            234677889999999987778989999999999999999999999988877655544

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=1.3e-19  Score=181.07  Aligned_cols=145  Identities=26%  Similarity=0.441  Sum_probs=135.9

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 005473          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (695)
Q Consensus       548 v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~  627 (695)
                      ..+|++|++.|++|+|+|++++|+||+.||+|+|||+.+++++.++.+|...|.+++|+|++.++++++.++.+.+|+..
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ   89 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccc
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       628 t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      .... ...+.+|...+.++.|+|++. .+++++.|+.+++||+++++.+..+.+|...+.+++| +|+
T Consensus        90 ~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  154 (317)
T d1vyhc1          90 GFEC-IRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP-NQD  154 (317)
T ss_dssp             SSCE-EECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE-CTT
T ss_pred             cccc-ccccccccccceeeeccCCCc-eEEeeccCcceeEeecccceeeeEEccCCCcceeeec-ccC
Confidence            8664 677888999999999999988 5668999999999999999999999999999999999 875

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.82  E-value=3.7e-19  Score=180.31  Aligned_cols=185  Identities=14%  Similarity=0.130  Sum_probs=142.0

Q ss_pred             cccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEe-c
Q 005473          474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-P  552 (695)
Q Consensus       474 l~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l-~  552 (695)
                      +...+...++.+.|+|++               +++++|+.|++|++|+...+                   ..+..+ .
T Consensus         7 ~~~GH~~~V~~l~~s~dg---------------~~l~s~s~Dg~v~vWd~~~~-------------------~~~~~~~~   52 (299)
T d1nr0a2           7 VRYGHNKAITALSSSADG---------------KTLFSADAEGHINSWDISTG-------------------ISNRVFPD   52 (299)
T ss_dssp             EECCCSSCEEEEEECTTS---------------SEEEEEETTSCEEEEETTTC-------------------CEEECSSC
T ss_pred             EcCCCCCCcEEEEECCCC---------------CEEEEEcCCCeEEEEECCCC-------------------cEEEEEcC
Confidence            345567788999999877               78999999999999976433                   122333 3


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE---------------------------------EEEe------
Q 005473          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV---------------------------------KSTL------  593 (695)
Q Consensus       553 ~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~---------------------------------~~~l------  593 (695)
                      +|...|++++|+|++++ ++++.|+.|++|++.....                                 +..+      
T Consensus        53 ~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~  131 (299)
T d1nr0a2          53 VHATMITGIKTTSKGDL-FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLT  131 (299)
T ss_dssp             SCSSCEEEEEECTTSCE-EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEE
T ss_pred             CCCCcEEEEEeecccee-ecccceeeEEEeccCCcccccccccccccccccccccccccccccccccccccccccccccc
Confidence            68888999999998874 4556788899998642100                                 0000      


Q ss_pred             -cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC
Q 005473          594 -EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (695)
Q Consensus       594 -~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t  672 (695)
                       ......+.+++|+|++.+|++|+.|+.|++||+++..........|...|++++|+|++. +|++|+.|+.|++||+.+
T Consensus       132 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~~~~~~  210 (299)
T d1nr0a2         132 EVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA-FLVATDQSRKVIPYSVAN  210 (299)
T ss_dssp             EEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSS-EEEEEETTSCEEEEEGGG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccc
Confidence             012345788999999999999999999999999876643445567899999999999987 566899999999999988


Q ss_pred             CeEE---EEEecCCCcEEEEEEeCCC
Q 005473          673 GSCA---GVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       673 g~~v---~~~~~h~~~VtsVaf~sPd  695 (695)
                      +..+   ..+.+|..+|++|+| +|+
T Consensus       211 ~~~~~~~~~~~~h~~~v~~l~~-s~~  235 (299)
T d1nr0a2         211 NFELAHTNSWTFHTAKVACVSW-SPD  235 (299)
T ss_dssp             TTEESCCCCCCCCSSCEEEEEE-CTT
T ss_pred             cccccccccccccccccccccc-ccc
Confidence            7654   455689999999999 985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=1.4e-18  Score=180.70  Aligned_cols=138  Identities=17%  Similarity=0.354  Sum_probs=117.5

Q ss_pred             eeEEEecCCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEEe---cccCCCeEEEEEcCC-CCEEEEEeCCCe
Q 005473          546 TEFQLIPASTSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTL---EEHTQWITDVRFSPS-LSRLATSSADRT  620 (695)
Q Consensus       546 ~~v~~l~~H~~~V~~v~fspdg~~-LaSgs~Dg~V~IWDl~t~~~~~~l---~~H~~~V~~v~~spd-g~~LaTgs~Dgt  620 (695)
                      ..+..+.+|...|++|+|++++.+ +++++.|+.|++||+.+.+....+   .+|...|++++|+|+ +.+|++++.|+.
T Consensus       150 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~  229 (325)
T d1pgua1         150 NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK  229 (325)
T ss_dssp             CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC
T ss_pred             ccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccc
Confidence            456778899999999999999874 778999999999999988877665   456788999999996 688999999999


Q ss_pred             EEEEECCCCCeeEEEEecCCCCeEEEEEe---cCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCc
Q 005473          621 VRVWDTENPDYSLRTFTGHSTTVMSLDFH---PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFES  685 (695)
Q Consensus       621 IrvWDl~t~~~~l~~~~gh~~~V~sl~fs---pdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~  685 (695)
                      |++||+++++ ++.++.+|...|.++.|+   |++. +|++|+.|+.|+|||+++++++..+..|...
T Consensus       230 i~iwd~~~~~-~~~~l~~~~~~v~~~~~s~~~~dg~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~  295 (325)
T d1pgua1         230 ISCFDGKSGE-FLKYIEDDQEPVQGGIFALSWLDSQ-KFATVGADATIRVWDVTTSKCVQKWTLDKQQ  295 (325)
T ss_dssp             EEEEETTTCC-EEEECCBTTBCCCSCEEEEEESSSS-EEEEEETTSEEEEEETTTTEEEEEEECCTTC
T ss_pred             eeeeeecccc-ccccccccccccccceeeeeccCCC-EEEEEeCCCeEEEEECCCCCEEEEEEecCCc
Confidence            9999999876 488899888877666555   5766 6679999999999999999999998876654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=7.4e-18  Score=171.27  Aligned_cols=167  Identities=17%  Similarity=0.300  Sum_probs=133.3

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      +++++|+.|++|++|+...+                   +.+.++.+|.+.|++|+|+++ .+|++|+.|++|++|++..
T Consensus        24 ~~l~tgs~Dg~i~vWd~~~~-------------------~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~   83 (355)
T d1nexb2          24 NYVITGADDKMIRVYDSINK-------------------KFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKK   83 (355)
T ss_dssp             TEEEEEETTTEEEEEETTTT-------------------EEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTT
T ss_pred             CEEEEEeCCCeEEEEECCCC-------------------cEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccc
Confidence            78999999999999966432                   467788999999999999985 5899999999999999998


Q ss_pred             CeEEEEecccC--CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC----------------------------------
Q 005473          587 FTVKSTLEEHT--QWITDVRFSPSLSRLATSSADRTVRVWDTENPD----------------------------------  630 (695)
Q Consensus       587 ~~~~~~l~~H~--~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~----------------------------------  630 (695)
                      .++......+.  ..+..+.+.+++.++++++.|++|++||+++..                                  
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (355)
T d1nexb2          84 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS  163 (355)
T ss_dssp             TEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSC
T ss_pred             cccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccc
Confidence            88776654333  334455566777778888888888888765321                                  


Q ss_pred             ----------------------------eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecC
Q 005473          631 ----------------------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNF  682 (695)
Q Consensus       631 ----------------------------~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h  682 (695)
                                                  ..+..+.++...+.++.|+|++. ++++++.|+.|++||++++.++..+.+|
T Consensus       164 v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h  242 (355)
T d1nexb2         164 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK-RCISASMDTTIRIWDLENGELMYTLQGH  242 (355)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             ccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccce-eeecccccceEEeeeccccccccccccc
Confidence                                        11233445667788999999988 5668899999999999999999999999


Q ss_pred             CCcEEEEEEeCCC
Q 005473          683 FESFVSVRVVQPR  695 (695)
Q Consensus       683 ~~~VtsVaf~sPd  695 (695)
                      ...|++++| +|+
T Consensus       243 ~~~v~~~~~-~~~  254 (355)
T d1nexb2         243 TALVGLLRL-SDK  254 (355)
T ss_dssp             SSCCCEEEE-CSS
T ss_pred             ccccccccc-ccc
Confidence            999999999 764

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=3.5e-18  Score=172.00  Aligned_cols=187  Identities=12%  Similarity=0.094  Sum_probs=132.6

Q ss_pred             ccccCCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEec
Q 005473          473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP  552 (695)
Q Consensus       473 ~l~~s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~  552 (695)
                      .+...+.+.++.+.|+|++               ++|++|+.|++|++|+.....                ....+....
T Consensus         5 ~~~~~h~d~I~~l~fsp~~---------------~~L~s~s~Dg~v~iwd~~~~~----------------~~~~~~~~~   53 (342)
T d1yfqa_           5 QIEQAPKDYISDIKIIPSK---------------SLLLITSWDGSLTVYKFDIQA----------------KNVDLLQSL   53 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGG---------------TEEEEEETTSEEEEEEEETTT----------------TEEEEEEEE
T ss_pred             EcCCCCCCCEEEEEEeCCC---------------CEEEEEECCCeEEEEEccCCC----------------cceEEEEec
Confidence            3455677889999999977               789999999999999664321                112233344


Q ss_pred             CCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEeccc-----------------------------------
Q 005473          553 ASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEH-----------------------------------  596 (695)
Q Consensus       553 ~H~~~V~~v~fspdg-~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H-----------------------------------  596 (695)
                      +|.++|+||+|++++ .+|++|+.|+.|++|++...........+                                   
T Consensus        54 ~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~  133 (342)
T d1yfqa_          54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG  133 (342)
T ss_dssp             ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHT
T ss_pred             CCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccc
Confidence            799999999999864 58999999999999998654332222111                                   


Q ss_pred             --------------CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee------------------------------
Q 005473          597 --------------TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS------------------------------  632 (695)
Q Consensus       597 --------------~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~------------------------------  632 (695)
                                    ......+.+.+.+..+++++.|+.|++||++.....                              
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  213 (342)
T d1yfqa_         134 DGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS  213 (342)
T ss_dssp             TBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE
T ss_pred             cceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeec
Confidence                          111223344556677888888888888887543210                              


Q ss_pred             ----EEE--------------------------EecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec-
Q 005473          633 ----LRT--------------------------FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKN-  681 (695)
Q Consensus       633 ----l~~--------------------------~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~-  681 (695)
                          +..                          ..+|...|.+|+|+|++. +|++|+.||.|+|||+.+++++..+.. 
T Consensus       214 ~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~lasg~~Dg~v~vWD~~~~~~l~~~~~~  292 (342)
T d1yfqa_         214 IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGIISCWNLQTRKKIKNFAKF  292 (342)
T ss_dssp             TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred             CCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCcc-EEEEECCCCEEEEEECCCCcEEEEecCC
Confidence                000                          013445688999999988 677999999999999999999998864 


Q ss_pred             CCCcEEEEEE
Q 005473          682 FFESFVSVRV  691 (695)
Q Consensus       682 h~~~VtsVaf  691 (695)
                      |...|.++++
T Consensus       293 ~~~~~~~~s~  302 (342)
T d1yfqa_         293 NEDSVVKIAC  302 (342)
T ss_dssp             SSSEEEEEEE
T ss_pred             CCCEEEEEEe
Confidence            5555666555

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=1.4e-18  Score=176.78  Aligned_cols=162  Identities=20%  Similarity=0.304  Sum_probs=137.0

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      .+++.+..|+.|++|+....                   ..+....++...+.++.|++++.++++++.|+.|+|||+++
T Consensus       172 ~~~~~~~~d~~i~~~d~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~  232 (355)
T d1nexb2         172 NIVVSGSYDNTLIVWDVAQM-------------------KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN  232 (355)
T ss_dssp             TEEEEEETTSCEEEEETTTT-------------------EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred             ceeeeecccceeeeeecccc-------------------cceeeeeccccccccccccccceeeecccccceEEeeeccc
Confidence            78899999999999965432                   34566778888899999999999999999999999999999


Q ss_pred             CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEE-ecCCCeEEEEEeCCCcE
Q 005473          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF-HPSKEDLLCSCDNNSEI  665 (695)
Q Consensus       587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~f-spdg~~llaSgs~Dg~I  665 (695)
                      +.++..+.+|...|.+++|++  .+|++|+.||+|++||+++..   ..+..|...+.++.+ ++++ .++++|+ |+.|
T Consensus       233 ~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~-~~l~~g~-d~~i  305 (355)
T d1nexb2         233 GELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYS---RKFSYHHTNLSAITTFYVSD-NILVSGS-ENQF  305 (355)
T ss_dssp             CCEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCC---EEEEEECTTCCCCCEEEECS-SEEEEEE-TTEE
T ss_pred             ccccccccccccccccccccc--ceeeeeecccccccccccccc---eecccccCCceEEEEEcCCC-CEEEEEe-CCEE
Confidence            999999999999999999974  699999999999999999754   344556667766654 5555 4776665 8999


Q ss_pred             EEEECCCCeEEE-EEecCCCcEEEEEEeCCC
Q 005473          666 RYWSINNGSCAG-VFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       666 riWDl~tg~~v~-~~~~h~~~VtsVaf~sPd  695 (695)
                      +|||+++++++. .+.+|.++|++|+| +|+
T Consensus       306 ~vwd~~tg~~~~~~~~~~~~~V~~v~~-~~~  335 (355)
T d1nexb2         306 NIYNLRSGKLVHANILKDADQIWSVNF-KGK  335 (355)
T ss_dssp             EEEETTTCCBCCSCTTTTCSEEEEEEE-ETT
T ss_pred             EEEECCCCCEEEEEecCCCCCEEEEEE-cCC
Confidence            999999999986 46689999999999 885

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.78  E-value=5.7e-18  Score=171.40  Aligned_cols=136  Identities=21%  Similarity=0.247  Sum_probs=113.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE-EecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee-
Q 005473          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-  632 (695)
Q Consensus       555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~-~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~-  632 (695)
                      ...+.+++|+|++++|++|+.|+.|++||+++.+... ....|...|++++|+|++.+|++++.|+.|++||+.++... 
T Consensus       136 ~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~  215 (299)
T d1nr0a2         136 SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA  215 (299)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3458899999999999999999999999998877654 34678999999999999999999999999999999876542 


Q ss_pred             -EEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEE--EEec-CCCcEEEEEE
Q 005473          633 -LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFKN-FFESFVSVRV  691 (695)
Q Consensus       633 -l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~--~~~~-h~~~VtsVaf  691 (695)
                       +..+.+|...|++++|+|++. +|++|+.||.|++||++++....  .... +...|.++.|
T Consensus       216 ~~~~~~~h~~~v~~l~~s~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  277 (299)
T d1nr0a2         216 HTNSWTFHTAKVACVSWSPDNV-RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW  277 (299)
T ss_dssp             CCCCCCCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE
T ss_pred             cccccccccccccccccccccc-ceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE
Confidence             345678999999999999987 67799999999999998865433  3333 4466777776

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=3e-18  Score=182.46  Aligned_cols=133  Identities=20%  Similarity=0.339  Sum_probs=108.1

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCc---EEEEE
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK---AVLWC  583 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~---V~IWD  583 (695)
                      .++++|+.|++|++|+...+.             ....+.....+.+|..+|++|+|+|||++|++|+.|++   |+|||
T Consensus       196 g~lasgs~Dg~i~iwd~~~~~-------------~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd  262 (393)
T d1sq9a_         196 GLIATGFNNGTVQISELSTLR-------------PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYE  262 (393)
T ss_dssp             SEEEEECTTSEEEEEETTTTE-------------EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEE
T ss_pred             CEEEEEeCCCcEEEEeecccc-------------cccccccccccccccceEEEcccccccceeeeecCCCCcceeeecc
Confidence            368999999999999764331             11223334556789999999999999999999999874   89999


Q ss_pred             CCCCeEEEEec-------------ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeE----EE
Q 005473          584 TESFTVKSTLE-------------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM----SL  646 (695)
Q Consensus       584 l~t~~~~~~l~-------------~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~----sl  646 (695)
                      +++++++..+.             +|.+.|++|+|+|++++|+||+.|++|+|||++++. ++.++.+|.+.|.    .+
T Consensus       263 ~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~-~~~~l~gH~~~v~~~~~~~  341 (393)
T d1sq9a_         263 TEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE-RITTLNMHCDDIEIEEDIL  341 (393)
T ss_dssp             TTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-EEEEEECCGGGCSSGGGCC
T ss_pred             cccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCC-EEEEECCcCCcccCCccEE
Confidence            99998887774             799999999999999999999999999999999865 6999999976654    35


Q ss_pred             EEecCCC
Q 005473          647 DFHPSKE  653 (695)
Q Consensus       647 ~fspdg~  653 (695)
                      +|+|++.
T Consensus       342 ~~~~~~~  348 (393)
T d1sq9a_         342 AVDEHGD  348 (393)
T ss_dssp             CBCTTSC
T ss_pred             EECCCCC
Confidence            6666665

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.8e-17  Score=167.48  Aligned_cols=161  Identities=23%  Similarity=0.394  Sum_probs=131.7

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      ..++.++.|+.|++|+..                   ....+..+.+|...+.++.+  ++.+|++|+.||.|++||++.
T Consensus       148 ~~~~~~~~d~~i~~~d~~-------------------~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~  206 (342)
T d2ovrb2         148 RRVVSGAYDFMVKVWDPE-------------------TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET  206 (342)
T ss_dssp             SCEEEEETTSCEEEEEGG-------------------GTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTT
T ss_pred             ceeeeecCCCeEEEeecc-------------------cceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeeccc
Confidence            556777778888887442                   12456677888877666655  688999999999999999999


Q ss_pred             CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEec---CCCCeEEEEEecCCCeEEEEEeCCC
Q 005473          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNNS  663 (695)
Q Consensus       587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~g---h~~~V~sl~fspdg~~llaSgs~Dg  663 (695)
                      ++++..+.+|...|.++.+++  .+|++|+.|++|++||+...+. ...+.+   |...+.++.|+++   ++++|+.||
T Consensus       207 ~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~s~s~Dg  280 (342)
T d2ovrb2         207 GNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQC-LQTLQGPNKHQSAVTCLQFNKN---FVITSSDDG  280 (342)
T ss_dssp             CCEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCE-EEEECSTTSCSSCEEEEEECSS---EEEEEETTS
T ss_pred             ceeeeEecccccceeEEecCC--CEEEEEcCCCEEEEEecccccc-cccccccceeeeceeecccCCC---eeEEEcCCC
Confidence            999999999999999998875  6999999999999999998664 555554   4566777777643   778999999


Q ss_pred             cEEEEECCCCeEEEEEe-----cCCCcEEEEEEeCCC
Q 005473          664 EIRYWSINNGSCAGVFK-----NFFESFVSVRVVQPR  695 (695)
Q Consensus       664 ~IriWDl~tg~~v~~~~-----~h~~~VtsVaf~sPd  695 (695)
                      +|+|||++++++++.+.     +|.+.|++|+| +|+
T Consensus       281 ~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~-s~~  316 (342)
T d2ovrb2         281 TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA-SNT  316 (342)
T ss_dssp             EEEEEETTTCCEEEEEEECTTGGGTCEEEEEEE-CSS
T ss_pred             EEEEEECCCCCEEEEEecccCCCCCCCEEEEEE-CCC
Confidence            99999999999998875     67889999999 985

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=5e-18  Score=171.06  Aligned_cols=144  Identities=22%  Similarity=0.331  Sum_probs=117.3

Q ss_pred             cEEEEeeCC-CcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005473          507 RFVDDGSLD-DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (695)
Q Consensus       507 ~~lasgS~D-~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~  585 (695)
                      ..++.++.| +.|++|.....                  .........|...|++|+|+|++.+|++|+.||.|+|||+.
T Consensus       131 ~~~~v~~~~~~~v~~~~~~~~------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~  192 (287)
T d1pgua2         131 NYVAVGLEEGNTIQVFKLSDL------------------EVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQ  192 (287)
T ss_dssp             SEEEEEETTTSCEEEEETTEE------------------EEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             cceeeeccccceeeeeecccc------------------ceeeeeeeccCCceeEEEeccCccccccccccccccceeec
Confidence            555666655 46888854211                  01122234577889999999999999999999999999999


Q ss_pred             CCeEEEE-ecccCCCeEEEEEcCC----------CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCe
Q 005473          586 SFTVKST-LEEHTQWITDVRFSPS----------LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED  654 (695)
Q Consensus       586 t~~~~~~-l~~H~~~V~~v~~spd----------g~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~  654 (695)
                      ++..+.. +.+|...|.+++|+|.          +.+|++|+.|++|+|||++++...+..+.+|...|++++|+|++. 
T Consensus       193 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~-  271 (287)
T d1pgua2         193 SREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-  271 (287)
T ss_dssp             TTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-
T ss_pred             ccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCE-
Confidence            9887653 6789999999999874          468999999999999999887767888899999999999999863 


Q ss_pred             EEEEEeCCCcEEEEEC
Q 005473          655 LLCSCDNNSEIRYWSI  670 (695)
Q Consensus       655 llaSgs~Dg~IriWDl  670 (695)
                       |++++.|++|++||+
T Consensus       272 -l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         272 -LVSSGADACIKRWNV  286 (287)
T ss_dssp             -EEEEETTSCEEEEEE
T ss_pred             -EEEEECCCeEEEEEE
Confidence             568899999999996

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=1.9e-18  Score=174.20  Aligned_cols=213  Identities=11%  Similarity=0.098  Sum_probs=146.3

Q ss_pred             ccCCCCCceEEEEecCCCccc---cccCCccCCCCcEEEEeeCCCcEEEEeCCCCCCCCC------------------cc
Q 005473          475 QHNGASSKSLLMFGSDGMGSL---TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRD------------------RV  533 (695)
Q Consensus       475 ~~s~s~~~s~l~~~~dg~~~l---a~s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~~~~------------------~~  533 (695)
                      .++++.++++..|........   .+..-.+. .+..+++++.|+++++|..........                  ..
T Consensus        24 l~sgs~Dg~v~~Wd~~~~~~~h~~~V~~~~~~-~~~~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (287)
T d1pgua2          24 LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNS-KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDD  102 (287)
T ss_dssp             TEEEETTSCEEETTTTEEECCCCSCEEEEECC-STTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSE
T ss_pred             EEEEeCCCeEEEEECCCCCCCCCCCEEEEEec-CCCeEEEEeeccccccccccccccccceeeeeeccCCceEEEeeccc
Confidence            345666777777755432000   00000011 235678899999999996543211100                  00


Q ss_pred             ccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCeEEEEe-cccCCCeEEEEEcCCCCE
Q 005473          534 GRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK-KAVLWCTESFTVKSTL-EEHTQWITDVRFSPSLSR  611 (695)
Q Consensus       534 ~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg-~V~IWDl~t~~~~~~l-~~H~~~V~~v~~spdg~~  611 (695)
                      ...++...+   ..+..+..+ .  .+.++++++..+++++.|+ .|++|++...+....+ ..|.+.|++++|+|++.+
T Consensus       103 ~~~~~~~~~---~~~~~~~~~-~--~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  176 (287)
T d1pgua2         103 LLILQSFTG---DIIKSVRLN-S--PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETY  176 (287)
T ss_dssp             EEEEETTTC---CEEEEEECS-S--CEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSE
T ss_pred             ceeeeccce---eeeeecccc-c--eeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccc
Confidence            011222111   122333222 2  2345667788888888764 7999999877666555 357889999999999999


Q ss_pred             EEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCC---------CeEEEEEeCCCcEEEEECCC-CeEEEEEec
Q 005473          612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK---------EDLLCSCDNNSEIRYWSINN-GSCAGVFKN  681 (695)
Q Consensus       612 LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg---------~~llaSgs~Dg~IriWDl~t-g~~v~~~~~  681 (695)
                      |++|+.||.|++||+.++......+.+|...|.+++|+|.+         ..++++|+.|+.|+|||+++ ++++..+.+
T Consensus       177 l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~  256 (287)
T d1pgua2         177 IAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA  256 (287)
T ss_dssp             EEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTS
T ss_pred             cccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCC
Confidence            99999999999999998765445678899999999999854         34788999999999999977 567888889


Q ss_pred             CCCcEEEEEEeCCC
Q 005473          682 FFESFVSVRVVQPR  695 (695)
Q Consensus       682 h~~~VtsVaf~sPd  695 (695)
                      |...|++|+| +|+
T Consensus       257 h~~~V~~v~~-~~~  269 (287)
T d1pgua2         257 HKDGVNNLLW-ETP  269 (287)
T ss_dssp             STTCEEEEEE-EET
T ss_pred             CCCCeEEEEE-CCC
Confidence            9999999999 874

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.1e-16  Score=157.90  Aligned_cols=158  Identities=23%  Similarity=0.452  Sum_probs=129.3

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      ++|++|+.|++|++|+....                   +++.++++|.+.|++|+|  ++++|++|+.|+.|++|++..
T Consensus        26 ~~l~sgs~Dg~i~vWd~~~~-------------------~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~   84 (293)
T d1p22a2          26 QKIVSGLRDNTIKIWDKNTL-------------------ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT   84 (293)
T ss_dssp             SEEEEEESSSCEEEEESSSC-------------------CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred             CEEEEEeCCCeEEEEECCCC-------------------cEEEEEecCCCCEeeeec--ccceeeccccccccccccccc
Confidence            78999999999999966332                   467788999999999987  578999999999999999865


Q ss_pred             CeEEE-------------------------------------------EecccCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 005473          587 FTVKS-------------------------------------------TLEEHTQWITDVRFSPSLSRLATSSADRTVRV  623 (695)
Q Consensus       587 ~~~~~-------------------------------------------~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrv  623 (695)
                      +....                                           .+..|...|.++.+.+  ..+++++.|+.|++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~  162 (293)
T d1p22a2          85 GEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKV  162 (293)
T ss_dssp             CCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEE
T ss_pred             ccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecc--cccccccCCCceee
Confidence            43221                                           1234556666666654  57888999999999


Q ss_pred             EECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       624 WDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf  691 (695)
                      ||+++.+. +..+.+|...|..+.+++.   .+++++.||.|++||+++.+++..+.+|...|..+.+
T Consensus       163 ~d~~~~~~-~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~  226 (293)
T d1p22a2         163 WNTSTCEF-VRTLNGHKRGIACLQYRDR---LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF  226 (293)
T ss_dssp             EETTTCCE-EEEEECCSSCEEEEEEETT---EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC
T ss_pred             ecCCCCcE-EEEEcccccccccccCCCC---eEEEecCCCEEEEEecccceeeeeecccceeeeeccc
Confidence            99998764 7888999999988888743   6779999999999999999999999999998887665

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.7e-16  Score=160.12  Aligned_cols=161  Identities=20%  Similarity=0.419  Sum_probs=125.3

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      ++|++|+.|++|++|+...+                   +++.++.+|.+.|.+++|+++  +|++|+.|+.+++|+...
T Consensus        28 ~~l~sgs~Dg~i~vWd~~~~-------------------~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~   86 (342)
T d2ovrb2          28 NRIVSGSDDNTLKVWSAVTG-------------------KCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAET   86 (342)
T ss_dssp             TEEEEEETTSCEEEEETTTC-------------------CEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTT
T ss_pred             CEEEEEeCCCeEEEEECCCC-------------------CEEEEEeCCCCCEEEEEeCCC--ccccceeccccccccccc
Confidence            68999999999999976433                   356677888888888888764  788888888888777542


Q ss_pred             --------------------------------------------------------------------------------
Q 005473          587 --------------------------------------------------------------------------------  586 (695)
Q Consensus       587 --------------------------------------------------------------------------------  586 (695)
                                                                                                      
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~  166 (342)
T d2ovrb2          87 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET  166 (342)
T ss_dssp             TEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGG
T ss_pred             ccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeeccc
Confidence                                                                                            


Q ss_pred             CeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEE
Q 005473          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (695)
Q Consensus       587 ~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~Ir  666 (695)
                      ..++..+.+|...+.++  .+++.+|++|+.||+|++||++..+ ++..+.+|...|.+++++++   +|++|+.|+.|+
T Consensus       167 ~~~~~~~~~~~~~~~~~--~~~~~~l~s~~~dg~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~~~---~l~s~s~d~~i~  240 (342)
T d2ovrb2         167 ETCLHTLQGHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETGN-CIHTLTGHQSLTSGMELKDN---ILVSGNADSTVK  240 (342)
T ss_dssp             TEEEEEECCCSSCEEEE--EECSSEEEEEETTSCEEEEETTTCC-EEEEECCCCSCEEEEEEETT---EEEEEETTSCEE
T ss_pred             ceeeEEEcCcccccccc--cCCCCEEEEEeCCCeEEEeecccce-eeeEecccccceeEEecCCC---EEEEEcCCCEEE
Confidence            12222333444444444  4467899999999999999999876 48899999999999988764   788999999999


Q ss_pred             EEECCCCeEEEEEec---CCCcEEEEEEeCCC
Q 005473          667 YWSINNGSCAGVFKN---FFESFVSVRVVQPR  695 (695)
Q Consensus       667 iWDl~tg~~v~~~~~---h~~~VtsVaf~sPd  695 (695)
                      +||+...+....+.+   |...+.++.| +|+
T Consensus       241 iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  271 (342)
T d2ovrb2         241 IWDIKTGQCLQTLQGPNKHQSAVTCLQF-NKN  271 (342)
T ss_dssp             EEETTTCCEEEEECSTTSCSSCEEEEEE-CSS
T ss_pred             EEecccccccccccccceeeeceeeccc-CCC
Confidence            999999988888774   6678888888 764

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.3e-16  Score=157.29  Aligned_cols=214  Identities=17%  Similarity=0.267  Sum_probs=160.9

Q ss_pred             ccccCCCCCceEEEEecCCCccccc------cCCccCCCCcEEEEeeCCCcEEEEeCCCCCC------------------
Q 005473          473 TLQHNGASSKSLLMFGSDGMGSLTS------APNQLTDMDRFVDDGSLDDNVESFLSPDDAD------------------  528 (695)
Q Consensus       473 ~l~~s~s~~~s~l~~~~dg~~~la~------s~~~l~~~~~~lasgS~D~~V~lw~~~~~~~------------------  528 (695)
                      ...++++.+.++..|.......+..      +...+....+++++|+.|+.|++|....+..                  
T Consensus        26 ~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (293)
T d1p22a2          26 QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN  105 (293)
T ss_dssp             SEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecccceeecccccccccccccccccccccccccccccccccccc
Confidence            3556677788888887654322111      0111233457999999999999998765421                  


Q ss_pred             ------CCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEE
Q 005473          529 ------PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD  602 (695)
Q Consensus       529 ------~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~  602 (695)
                            ..+....+|+............+..|...|.++.+.+  ..+++++.|+.|++||+++++++..+.+|...|..
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~  183 (293)
T d1p22a2         106 GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC  183 (293)
T ss_dssp             TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred             cceeecccccceeEeeccccccccccccccccccccccceecc--cccccccCCCceeeecCCCCcEEEEEccccccccc
Confidence                  0111123444444444455666778888898888764  57889999999999999999999999999999999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCC---------C
Q 005473          603 VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---------G  673 (695)
Q Consensus       603 v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~t---------g  673 (695)
                      +.++  +..|++++.|++|++||+++... +..+.+|...|.++  .+++. +|++|+.||.|++||+.+         .
T Consensus       184 ~~~~--~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~--~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~  257 (293)
T d1p22a2         184 LQYR--DRLVVSGSSDNTIRLWDIECGAC-LRVLEGHEELVRCI--RFDNK-RIVSGAYDGKIKVWDLVAALDPRAPAGT  257 (293)
T ss_dssp             EEEE--TTEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEE--ECCSS-EEEEEETTSCEEEEEHHHHTSTTSCTTT
T ss_pred             ccCC--CCeEEEecCCCEEEEEeccccee-eeeecccceeeeec--cccce-EEEEEcCCCEEEEEECCCCccccccCCc
Confidence            8886  46899999999999999998664 78888888888764  44544 677999999999999743         3


Q ss_pred             eEEEEEecCCCcEEEEEEeCCC
Q 005473          674 SCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       674 ~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      .++..+.+|.+.|++|+| +|+
T Consensus       258 ~~~~~~~~H~~~V~~v~~-d~~  278 (293)
T d1p22a2         258 LCLRTLVEHSGRVFRLQF-DEF  278 (293)
T ss_dssp             TEEEEECCCSSCCCCEEE-CSS
T ss_pred             eeeEEecCCCCCEEEEEE-cCC
Confidence            578899999999999999 763

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.69  E-value=6.5e-16  Score=158.59  Aligned_cols=163  Identities=6%  Similarity=-0.068  Sum_probs=130.3

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEEC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK--KAVLWCT  584 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg--~V~IWDl  584 (695)
                      ++++.++ ++.|.+|+...+                    .+..+ +|...|.+++|+|||++|++++.|.  .|+|||+
T Consensus        16 ~~~a~~~-~g~v~v~d~~~~--------------------~~~~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~   73 (360)
T d1k32a3          16 DLIAFVS-RGQAFIQDVSGT--------------------YVLKV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDY   73 (360)
T ss_dssp             GCEEEEE-TTEEEEECTTSS--------------------BEEEC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEET
T ss_pred             CEEEEEE-CCeEEEEECCCC--------------------cEEEc-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEEC
Confidence            5667665 478999955322                    11122 6889999999999999998777553  7999999


Q ss_pred             CCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEE-----
Q 005473          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC-----  659 (695)
Q Consensus       585 ~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSg-----  659 (695)
                      ++++.. .+..|...|.+++|+|++++|++++.++.+++|++.++.. ...+..|...+.+++|+|+|..+++++     
T Consensus        74 ~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~  151 (360)
T d1k32a3          74 RTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP-TVIERSREAMITDFTISDNSRFIAYGFPLKHG  151 (360)
T ss_dssp             TTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-EEEEECSSSCCCCEEECTTSCEEEEEEEECSS
T ss_pred             CCCcEE-EeeCCCceEEeeeecccccccceeccccccccccccccce-eeeeecccccccchhhccceeeeeeecccccc
Confidence            887655 6778999999999999999999999999999999998664 778888999999999999999766543     


Q ss_pred             ----eCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          660 ----DNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       660 ----s~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                          ..++.+++||+.++++.... .|...+..++| +|+
T Consensus       152 ~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~-spd  189 (360)
T d1k32a3         152 ETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAF-DAD  189 (360)
T ss_dssp             TTCSCCEEEEEEEETTTTEEEECS-CSSSBEEEEEE-CTT
T ss_pred             ceeeccccceeeeccccCceeeec-ccccccccccc-cCC
Confidence                23457999999988765544 56677888899 886

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=5.2e-16  Score=155.80  Aligned_cols=125  Identities=10%  Similarity=0.017  Sum_probs=99.1

Q ss_pred             eEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE---EEecccCCCeEEEEEcCC-CCEEEEEeCCCeEE
Q 005473          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK---STLEEHTQWITDVRFSPS-LSRLATSSADRTVR  622 (695)
Q Consensus       547 ~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~---~~l~~H~~~V~~v~~spd-g~~LaTgs~DgtIr  622 (695)
                      .+..+.+|++.|++|+|+|++++||+|+.||+|+|||+++....   ....+|.+.|++++|+|+ +.+|++|+.|++|+
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence            45667899999999999999999999999999999999765432   333479999999999986 45789999999999


Q ss_pred             EEECCCCCeeEEEEecCCCC-eEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 005473          623 VWDTENPDYSLRTFTGHSTT-VMSLDFHPSKEDLLCSCDNNSEIRYWSINNG  673 (695)
Q Consensus       623 vWDl~t~~~~l~~~~gh~~~-V~sl~fspdg~~llaSgs~Dg~IriWDl~tg  673 (695)
                      +|++..... ......+... .....+.+++. ++++++.|+.+++||++++
T Consensus        83 ~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~wd~~~~  132 (342)
T d1yfqa_          83 KVDLIGSPS-FQALTNNEANLGICRICKYGDD-KLIAASWDGLIEVIDPRNY  132 (342)
T ss_dssp             EECSSSSSS-EEECBSCCCCSCEEEEEEETTT-EEEEEETTSEEEEECHHHH
T ss_pred             eeecccccc-cccccccccccccccccccccc-cccccccccccceeecccc
Confidence            999998765 4444444433 44455555554 6779999999999998653

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.62  E-value=5.3e-15  Score=151.65  Aligned_cols=159  Identities=11%  Similarity=-0.008  Sum_probs=128.7

Q ss_pred             CCCCCceEEEEecCCCccccccCCccCCCCcEEEEeeCCC--cEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCC
Q 005473          477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDD--NVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS  554 (695)
Q Consensus       477 s~s~~~s~l~~~~dg~~~la~s~~~l~~~~~~lasgS~D~--~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H  554 (695)
                      .+...+..+.|+||+               +++++++.|.  .|++|+...+                    .+..+..|
T Consensus        40 ~~~~~v~~~~~spDg---------------~~l~~~~~~~g~~v~v~d~~~~--------------------~~~~~~~~   84 (360)
T d1k32a3          40 PEPLRIRYVRRGGDT---------------KVAFIHGTREGDFLGIYDYRTG--------------------KAEKFEEN   84 (360)
T ss_dssp             SCCSCEEEEEECSSS---------------EEEEEEEETTEEEEEEEETTTC--------------------CEEECCCC
T ss_pred             cCCCCEEEEEECCCC---------------CEEEEEEcCCCCEEEEEECCCC--------------------cEEEeeCC
Confidence            345567888898888               4555554443  6788865432                    23456789


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEe----------CCCeEEEE
Q 005473          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVW  624 (695)
Q Consensus       555 ~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs----------~DgtIrvW  624 (695)
                      ...|.+++|+|||++|++++.|+.+++|++.++++...+..|...+.+++|+|++++|+.++          .++.+++|
T Consensus        85 ~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~  164 (360)
T d1k32a3          85 LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVY  164 (360)
T ss_dssp             CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEE
T ss_pred             CceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeee
Confidence            99999999999999999999999999999999999999999999999999999999998653          34569999


Q ss_pred             ECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 005473          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG  673 (695)
Q Consensus       625 Dl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg  673 (695)
                      |+.++.  ...+..|...+.++.|+|+|+ .|++++.|+.+++||....
T Consensus       165 d~~~~~--~~~~~~~~~~~~~~~~spdg~-~l~~~s~~~~~~~~d~~~~  210 (360)
T d1k32a3         165 DMEGRK--IFAATTENSHDYAPAFDADSK-NLYYLSYRSLDPSPDRVVL  210 (360)
T ss_dssp             ETTTTE--EEECSCSSSBEEEEEECTTSC-EEEEEESCCCCCEECSSSS
T ss_pred             ccccCc--eeeecccccccccccccCCCC-EEEEEeCCCceEccccccc
Confidence            999754  355566778899999999998 4558888999999997654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.58  E-value=3e-14  Score=154.74  Aligned_cols=167  Identities=9%  Similarity=-0.050  Sum_probs=132.6

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      -++++.+.|++|.+|+....                   ..+..+..|. .+..++|+|||++|++++.|++|++||+.+
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~-------------------~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t   92 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTY-------------------EIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWM   92 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTC-------------------CEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred             EEEEEEcCCCEEEEEECCCC-------------------cEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeC
Confidence            45689999999999966433                   4566666664 599999999999999999999999999988


Q ss_pred             CeEE--EEe---cccCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCeeEEEEec-----------CCCCeEEEEEe
Q 005473          587 FTVK--STL---EEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTG-----------HSTTVMSLDFH  649 (695)
Q Consensus       587 ~~~~--~~l---~~H~~~V~~v~~spdg~~L-aTgs~DgtIrvWDl~t~~~~l~~~~g-----------h~~~V~sl~fs  649 (695)
                      ++..  ..+   .+|.+.+.++.|+|||++| ++++.+++|+|||..+++. +..+..           +.+.+..+.++
T Consensus        93 ~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~s  171 (432)
T d1qksa2          93 KEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAILAS  171 (432)
T ss_dssp             SSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTCCEESCCCEEEEEEC
T ss_pred             CCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccc-eeeeccCCccccceeccCCCceeEEEEC
Confidence            7642  222   4567777788889999976 7788899999999998764 555543           34556788999


Q ss_pred             cCCCeEEEEEeCCCcEEEEECCCCeEEEEEe-cCCCcEEEEEEeCCC
Q 005473          650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-NFFESFVSVRVVQPR  695 (695)
Q Consensus       650 pdg~~llaSgs~Dg~IriWDl~tg~~v~~~~-~h~~~VtsVaf~sPd  695 (695)
                      |+|..++++...++.|.+||..+++...... .+...+..++| +|+
T Consensus       172 ~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~-spd  217 (432)
T d1qksa2         172 HYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGL-DGS  217 (432)
T ss_dssp             SSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEE-CTT
T ss_pred             CCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceE-CCC
Confidence            9999888899999999999999887655444 45567788999 986

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.45  E-value=6.5e-12  Score=125.00  Aligned_cols=161  Identities=19%  Similarity=0.185  Sum_probs=127.6

Q ss_pred             EEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCe
Q 005473          510 DDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFT  588 (695)
Q Consensus       510 asgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~La-Sgs~Dg~V~IWDl~t~~  588 (695)
                      ++++.|++|.+|+...+                   +.+.++... ..+..++|+|||++|+ +++.++.|++||+.+++
T Consensus         6 V~~~~~~~v~v~D~~t~-------------------~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~   65 (301)
T d1l0qa2           6 IANSESDNISVIDVTSN-------------------KVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN   65 (301)
T ss_dssp             EEETTTTEEEEEETTTT-------------------EEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred             EEECCCCEEEEEECCCC-------------------eEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc
Confidence            45678899999965433                   233444433 3478999999999875 56678999999999999


Q ss_pred             EEEEecccCCCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEE
Q 005473          589 VKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY  667 (695)
Q Consensus       589 ~~~~l~~H~~~V~~v~~spdg~~La-Tgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~Iri  667 (695)
                      ++..+..|. .+..++|++++..++ ++..++.+++||..++.. +..+.. ...+.+++|+|++..+++++..++.+.+
T Consensus        66 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~  142 (301)
T d1l0qa2          66 VIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV-AGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSV  142 (301)
T ss_dssp             EEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             eeeeeeccc-cccccccccccccccccccccceeeeccccccee-eeeccc-cccceEEEeecCCCeeeeeeccccceee
Confidence            999988765 468999999988664 556678999999998653 556554 4568899999999988889999999999


Q ss_pred             EECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          668 WSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       668 WDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      |+..+++.+..+..+. .+..++| +|+
T Consensus       143 ~~~~~~~~~~~~~~~~-~~~~~~~-~~~  168 (301)
T d1l0qa2         143 INTVTKAVINTVSVGR-SPKGIAV-TPD  168 (301)
T ss_dssp             EETTTTEEEEEEECCS-SEEEEEE-CTT
T ss_pred             eeccccceeeecccCC-CceEEEe-ecc
Confidence            9999999999887664 4678888 774

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.45  E-value=5.6e-13  Score=143.14  Aligned_cols=167  Identities=7%  Similarity=-0.054  Sum_probs=122.3

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      -++++.+.|+.|++|+...+                   +.+.++..|. .+..++|+|||++|++++.|++|++||+.+
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~-------------------~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t   92 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSK-------------------KIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWA   92 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTC-------------------SEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred             EEEEEEcCCCEEEEEECCCC-------------------cEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccC
Confidence            46688889999999966433                   4566777775 589999999999999999999999999998


Q ss_pred             CeEEEEe-----cccCCCeEEEEEcCCCCEEEE-EeCCCeEEEEECCCCCeeEEEEecCCC-----------CeEEEEEe
Q 005473          587 FTVKSTL-----EEHTQWITDVRFSPSLSRLAT-SSADRTVRVWDTENPDYSLRTFTGHST-----------TVMSLDFH  649 (695)
Q Consensus       587 ~~~~~~l-----~~H~~~V~~v~~spdg~~LaT-gs~DgtIrvWDl~t~~~~l~~~~gh~~-----------~V~sl~fs  649 (695)
                      +++....     .+|.+.+.+++|+|||++|++ +..+++|++||..+... +..+.+|..           .+..+.++
T Consensus        93 ~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~s  171 (426)
T d1hzua2          93 KEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP-KQIVSTRGMTVDTQTYHPEPRVAAIIAS  171 (426)
T ss_dssp             SSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE-EEEEECCEECSSSCCEESCCCEEEEEEC
T ss_pred             CceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccce-eEEeeccCCCccceeecCCCceeEEEEC
Confidence            8754332     367777888899999998755 45799999999998764 555554443           34556666


Q ss_pred             cCCCeEEEEEeCCCcEEEEECCCCeEE-EEEecCCCcEEEEEEeCCC
Q 005473          650 PSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       650 pdg~~llaSgs~Dg~IriWDl~tg~~v-~~~~~h~~~VtsVaf~sPd  695 (695)
                      +++..++++....+.|.+++...+..+ ....++...+..++| +|+
T Consensus       172 ~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  217 (426)
T d1hzua2         172 HEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGW-DSS  217 (426)
T ss_dssp             SSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEE-CTT
T ss_pred             CCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeE-CCC
Confidence            666666655555666666666554432 233366777888888 774

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.43  E-value=1.1e-13  Score=148.79  Aligned_cols=117  Identities=9%  Similarity=-0.092  Sum_probs=99.5

Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee----EEEEecCCCCeE
Q 005473          569 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS----LRTFTGHSTTVM  644 (695)
Q Consensus       569 ~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~----l~~~~gh~~~V~  644 (695)
                      ++++++.||+|+|||+.+++++.++..|. .+..++|+|||++|++++.|++|++||+.+++..    +....+|.+.+.
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~  112 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES  112 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence            56778889999999999999999998764 6899999999999999999999999999987632    122335666778


Q ss_pred             EEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcE
Q 005473          645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESF  686 (695)
Q Consensus       645 sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~V  686 (695)
                      +++|+|||+.+++++..++.|++||..++.++..+.+|...|
T Consensus       113 s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~  154 (426)
T d1hzua2         113 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV  154 (426)
T ss_dssp             CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECS
T ss_pred             eeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCc
Confidence            888999999888888899999999999999998887665443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.39  E-value=4.7e-11  Score=118.61  Aligned_cols=153  Identities=10%  Similarity=0.083  Sum_probs=115.7

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEECC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD-KKAVLWCTE  585 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~D-g~V~IWDl~  585 (695)
                      .+++++..+..+.+|+....                   ..+..+..+ ..+.++.|+++++.+++++.+ +.+.+|+..
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (301)
T d1l0qa2         129 KLYVTNNGDKTVSVINTVTK-------------------AVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTV  188 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTT-------------------EEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             eeeeeeccccceeeeecccc-------------------ceeeecccC-CCceEEEeeccccceeeeccccccccccccc
Confidence            44556666777777744322                   233333333 458899999999988888765 667788888


Q ss_pred             CCeEEEEecccCCCeEEEEEcCCCCEEEEEe---CCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC
Q 005473          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSS---ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (695)
Q Consensus       586 t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs---~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D  662 (695)
                      ..+....+.. ...+..++|++++..++.++   .+++|++||+.+++. +..+.. ...+.+++|+|||+.++++++.|
T Consensus       189 ~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~-~~~~~~-~~~~~~va~spdg~~l~va~~~~  265 (301)
T d1l0qa2         189 TNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI-TARIPV-GPDPAGIAVTPDGKKVYVALSFC  265 (301)
T ss_dssp             TTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE-EEEEEC-CSSEEEEEECTTSSEEEEEETTT
T ss_pred             ceeeeecccc-cCCcceeeccccccccccccccceeeeeeeeecCCCeE-EEEEcC-CCCEEEEEEeCCCCEEEEEECCC
Confidence            7777766654 45677899999999876654   346899999998764 566554 45689999999999888899999


Q ss_pred             CcEEEEECCCCeEEEEEecC
Q 005473          663 SEIRYWSINNGSCAGVFKNF  682 (695)
Q Consensus       663 g~IriWDl~tg~~v~~~~~h  682 (695)
                      +.|++||+.+++++.++...
T Consensus       266 ~~i~v~D~~t~~~~~~~~vg  285 (301)
T d1l0qa2         266 NTVSVIDTATNTITATMAVG  285 (301)
T ss_dssp             TEEEEEETTTTEEEEEEECS
T ss_pred             CeEEEEECCCCeEEEEEeCC
Confidence            99999999999999998743

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.38  E-value=9.3e-12  Score=134.71  Aligned_cols=163  Identities=10%  Similarity=0.001  Sum_probs=125.1

Q ss_pred             CCCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEE
Q 005473          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLW  582 (695)
Q Consensus       504 ~~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~L-aSgs~Dg~V~IW  582 (695)
                      +..+++++++.|++|++|+...+.              .....++....+|.+.+.+..|+|||++| +++..+++|+||
T Consensus        71 pDG~~l~~~s~dg~v~~~d~~t~~--------------~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~  136 (432)
T d1qksa2          71 ASGRYLFVIGRDGKVNMIDLWMKE--------------PTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIM  136 (432)
T ss_dssp             TTSCEEEEEETTSEEEEEETTSSS--------------CCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEE
T ss_pred             CCCCEEEEEcCCCCEEEEEeeCCC--------------ceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEE
Confidence            334888999999999999764331              11223344445666677888899999976 678889999999


Q ss_pred             ECCCCeEEEEeccc-----------CCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEec
Q 005473          583 CTESFTVKSTLEEH-----------TQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP  650 (695)
Q Consensus       583 Dl~t~~~~~~l~~H-----------~~~V~~v~~spdg~~L-aTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fsp  650 (695)
                      |..+++++..+..|           ...+..|.++|++..+ ++...++.|.+||..+.+........+...+..++|+|
T Consensus       137 d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~sp  216 (432)
T d1qksa2         137 DGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG  216 (432)
T ss_dssp             ETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECT
T ss_pred             eCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECC
Confidence            99999998877654           3456678899998876 55667899999999886642222234566789999999


Q ss_pred             CCCeEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473          651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFK  680 (695)
Q Consensus       651 dg~~llaSgs~Dg~IriWDl~tg~~v~~~~  680 (695)
                      +|+++++++..+..|.+||..+++.+..+.
T Consensus       217 dg~~~~va~~~~~~v~v~d~~~~~~~~~~~  246 (432)
T d1qksa2         217 SHRYFITAANARNKLVVIDTKEGKLVAIED  246 (432)
T ss_dssp             TSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             CCCEEEEeccccceEEEeecccceEEEEec
Confidence            999888888888999999999998887765

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.36  E-value=1.2e-11  Score=124.63  Aligned_cols=153  Identities=12%  Similarity=0.083  Sum_probs=119.2

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecC--CCCCeEEEEEcCCCCEEE-EEeCCCcEEEEE
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA--STSKVESCHFSPDGKLLA-TGGHDKKAVLWC  583 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~--H~~~V~~v~fspdg~~La-Sgs~Dg~V~IWD  583 (695)
                      +|+++++.|++|++|+....                   +.+..+..  +...+.+++|+|||++|+ +++.|+.|++||
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~-------------------~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D   62 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKM-------------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID   62 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT-------------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             eEEEEEcCCCEEEEEECCCC-------------------eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEE
Confidence            68999999999999976433                   34444443  445578999999999875 566799999999


Q ss_pred             CCCCeEEEEecccC-----CCeEEEEEcCCCCEEEEEe------------CCCeEEEEECCCCCeeEEEEecCCCCeEEE
Q 005473          584 TESFTVKSTLEEHT-----QWITDVRFSPSLSRLATSS------------ADRTVRVWDTENPDYSLRTFTGHSTTVMSL  646 (695)
Q Consensus       584 l~t~~~~~~l~~H~-----~~V~~v~~spdg~~LaTgs------------~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl  646 (695)
                      +.+++.+..+..+.     ..+..++|+|+++++++++            .+..+.+||..++.. +..+. +...+.++
T Consensus        63 ~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~-~~~~~~~~  140 (337)
T d1pbyb_          63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFE-APRQITML  140 (337)
T ss_dssp             TTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEE-CCSSCCCE
T ss_pred             CCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeE-EEecc-ccCCceEE
Confidence            99999998886553     3456799999999998776            467899999998653 56665 44668899


Q ss_pred             EEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCC
Q 005473          647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFF  683 (695)
Q Consensus       647 ~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~  683 (695)
                      +|+|+|+.++ +++  +.+.+||..+++++..+..+.
T Consensus       141 ~~s~dg~~l~-~~~--~~~~~~d~~~~~~~~~~~~~~  174 (337)
T d1pbyb_         141 AWARDGSKLY-GLG--RDLHVMDPEAGTLVEDKPIQS  174 (337)
T ss_dssp             EECTTSSCEE-EES--SSEEEEETTTTEEEEEECSTT
T ss_pred             EEcCCCCEEE-EEc--CCcceeeeecCcEEEEeecCC
Confidence            9999999666 444  458899999999988887543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.34  E-value=3.4e-11  Score=121.69  Aligned_cols=70  Identities=9%  Similarity=0.016  Sum_probs=50.6

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEec-CCCCCeEEEEEcCCCCEEEE-EeCCCcEEEE
Q 005473          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLAT-GGHDKKAVLW  582 (695)
Q Consensus       505 ~~~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~-~H~~~V~~v~fspdg~~LaS-gs~Dg~V~IW  582 (695)
                      ..+|+++++.|++|.+|+...+                   +.+.+++ .|...+.+++|+|||++|++ ++.++.|++|
T Consensus         7 ~~~~l~~~~~~~~v~v~D~~t~-------------------~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~   67 (346)
T d1jmxb_           7 GHEYMIVTNYPNNLHVVDVASD-------------------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGI   67 (346)
T ss_dssp             TCEEEEEEETTTEEEEEETTTT-------------------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCcEEEEEcCCCEEEEEECCCC-------------------CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEE
Confidence            3489999999999999976433                   3445554 34556788999999887644 4567889999


Q ss_pred             ECCCCeEEEEe
Q 005473          583 CTESFTVKSTL  593 (695)
Q Consensus       583 Dl~t~~~~~~l  593 (695)
                      |+.+++.+..+
T Consensus        68 d~~t~~~~~~~   78 (346)
T d1jmxb_          68 DLDTCKNTFHA   78 (346)
T ss_dssp             ETTTTEEEEEE
T ss_pred             eCccCeeeeee
Confidence            88776655443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=3.5e-11  Score=121.60  Aligned_cols=170  Identities=11%  Similarity=0.044  Sum_probs=120.3

Q ss_pred             EEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCC
Q 005473          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTES  586 (695)
Q Consensus       508 ~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs-~Dg~V~IWDl~t  586 (695)
                      .+++++.|++|++|+.....                ....+.. ..|.+.|.+|+|+|||++|++++ .|+.|++|++..
T Consensus         6 v~v~~~~~~~I~v~~~~~~~----------------~l~~~~~-~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~   68 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEG----------------ALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP   68 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTS----------------CEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             EEEECCCCCcEEEEEEcCCC----------------CeEEEEE-EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeC
Confidence            34677899999999765331                1122222 35678899999999999986665 489999999976


Q ss_pred             CeEEEEe---cccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCe-eEEEEecCCCCeEEEEEecCCCeEEEEEeC
Q 005473          587 FTVKSTL---EEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (695)
Q Consensus       587 ~~~~~~l---~~H~~~V~~v~~spdg~~LaTgs~-DgtIrvWDl~t~~~-~l~~~~gh~~~V~sl~fspdg~~llaSgs~  661 (695)
                      ......+   ..+...+..++|+|||++|++++. ++.|++|+...... .......+...+.++.|+|++..+++.+..
T Consensus        69 ~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~  148 (333)
T d1ri6a_          69 DDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK  148 (333)
T ss_dssp             TTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG
T ss_pred             CCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccc
Confidence            5433333   234566788999999999988875 67899999876543 223344567788999999999988877777


Q ss_pred             CCcEEEEECCCCeEEEE------EecCCCcEEEEEEeCCC
Q 005473          662 NSEIRYWSINNGSCAGV------FKNFFESFVSVRVVQPR  695 (695)
Q Consensus       662 Dg~IriWDl~tg~~v~~------~~~h~~~VtsVaf~sPd  695 (695)
                      +..|.+|+.........      ...+......++| +|+
T Consensus       149 ~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~-~~~  187 (333)
T d1ri6a_         149 QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVF-HPN  187 (333)
T ss_dssp             GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEE-CTT
T ss_pred             cceeeEEEeccCCcceeeeceeeeeecCCCccEEEE-ecc
Confidence            88899999876432211      1133445577887 664

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.21  E-value=6.1e-11  Score=119.29  Aligned_cols=125  Identities=11%  Similarity=0.065  Sum_probs=101.7

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEecc--cCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCeeEEEEecCCC---
Q 005473          568 KLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHST---  641 (695)
Q Consensus       568 ~~LaSgs~Dg~V~IWDl~t~~~~~~l~~--H~~~V~~v~~spdg~~L-aTgs~DgtIrvWDl~t~~~~l~~~~gh~~---  641 (695)
                      +||++++.|++|+|||+.+++++.++..  +...+.+++|+|||++| ++++.|+.|++||+.+++. +..+..+..   
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~-~~~~~~~~~~~~   80 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-LGRIDLSTPEER   80 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-EEEEECCBTTEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcE-EEEEecCCCccc
Confidence            5899999999999999999999988854  34568899999999987 5667899999999999775 666655432   


Q ss_pred             --CeEEEEEecCCCeEEEEEe-----------CCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          642 --TVMSLDFHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       642 --~V~sl~fspdg~~llaSgs-----------~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                        .+..++|+|+++.+++++.           .+..+.+||..+++++..+..+ ..+..++| +|+
T Consensus        81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~-s~d  145 (337)
T d1pbyb_          81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAW-ARD  145 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEE-CTT
T ss_pred             ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-CCceEEEE-cCC
Confidence              3457899999997765543           4688999999999999998755 45678898 875

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.14  E-value=8.9e-11  Score=118.53  Aligned_cols=118  Identities=9%  Similarity=0.020  Sum_probs=94.1

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEec-ccCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCeeEEEEec
Q 005473          561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTG  638 (695)
Q Consensus       561 v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~-~H~~~V~~v~~spdg~~L-aTgs~DgtIrvWDl~t~~~~l~~~~g  638 (695)
                      ++|++++++|++++.|++|.|||+.+++++.++. .|...+.+++|+|||+++ ++++.++.|++||+.+++. +..+..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~-~~~~~~   80 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-TFHANL   80 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEES
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCee-eeeecc
Confidence            4688999999999999999999999999999886 456678899999999987 5556789999999998765 555443


Q ss_pred             CC------CCeEEEEEecCCCeEEEEEe-----------CCCcEEEEECCCCeEEEEE
Q 005473          639 HS------TTVMSLDFHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVF  679 (695)
Q Consensus       639 h~------~~V~sl~fspdg~~llaSgs-----------~Dg~IriWDl~tg~~v~~~  679 (695)
                      ..      ..+..++|+|||+.+++++.           .++.|.+||..+++.+..+
T Consensus        81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  138 (346)
T d1jmxb_          81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV  138 (346)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS
T ss_pred             cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEE
Confidence            22      23567999999997766542           5788999999877654433

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=4e-10  Score=113.65  Aligned_cols=126  Identities=10%  Similarity=0.136  Sum_probs=93.5

Q ss_pred             EEEEEeCCCcEEEEECCCCeEEE--EecccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCeeE--EEEecCCCCe
Q 005473          569 LLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSL--RTFTGHSTTV  643 (695)
Q Consensus       569 ~LaSgs~Dg~V~IWDl~t~~~~~--~l~~H~~~V~~v~~spdg~~LaTgs-~DgtIrvWDl~t~~~~l--~~~~gh~~~V  643 (695)
                      .+++++.|++|+|||+.....+.  ....|.+.|.+|+|+|||++|++++ .|+.|++|++......+  .....+...+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            45677789999999997544332  2346889999999999999986555 58999999998655322  2223345568


Q ss_pred             EEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEE--EecCCCcEEEEEEeCCC
Q 005473          644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV--FKNFFESFVSVRVVQPR  695 (695)
Q Consensus       644 ~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~--~~~h~~~VtsVaf~sPd  695 (695)
                      +.++|+|||+.+++++..++.|++|+.........  ...+...+.++.| +|+
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~-s~d  138 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANI-SPD  138 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEE-CTT
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEe-eec
Confidence            88999999998887776788999999887654433  3356677788888 775

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.01  E-value=2.8e-08  Score=102.09  Aligned_cols=169  Identities=8%  Similarity=-0.028  Sum_probs=110.8

Q ss_pred             cEEEEeeCCCcEEEEeCCCCCCCCCccccccccCCCceeeeEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005473          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (695)
Q Consensus       507 ~~lasgS~D~~V~lw~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t  586 (695)
                      ..+++.+.|+.+.+|+.........             ........++......+.+.+++.++ ..+.++.+++|+..+
T Consensus       178 ~~~v~~~~dg~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~  243 (373)
T d2madh_         178 STFYLLCAQGGLAKTDHAGGAAGAG-------------LVGAMLTAAQNLLTQPAQANKSGRIV-WPVYSGKILQADISA  243 (373)
T ss_pred             cEEEEEcCCCeEEEEEcCCceeeEE-------------EeeeccccCccceeeeEEECCCceEE-EecCCceEEEEEcCC
Confidence            5567788899999996543321100             00000111222224455666666554 456788999999877


Q ss_pred             CeEEE--EecccC----------CCeEEEEEcCCCCE----------EEEEeCCCeEEEEECCCCCeeEEEEecCCCCeE
Q 005473          587 FTVKS--TLEEHT----------QWITDVRFSPSLSR----------LATSSADRTVRVWDTENPDYSLRTFTGHSTTVM  644 (695)
Q Consensus       587 ~~~~~--~l~~H~----------~~V~~v~~spdg~~----------LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~  644 (695)
                      .....  .+..+.          .....+++++++..          +++...++.|.+||+.+++. +..+. +...+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~-~~~~~-~~~~~~  321 (373)
T d2madh_         244 AGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT-SSQIS-LGHDVD  321 (373)
T ss_pred             CeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcE-EEEec-CCCCee
Confidence            65332  222222          22334455555544          34456678899999998775 55554 667799


Q ss_pred             EEEEecCCCe-EEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473          645 SLDFHPSKED-LLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       645 sl~fspdg~~-llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf  691 (695)
                      +++|+|||+. ++++++.|+.|+|||+.+++.+.++..+....+.|++
T Consensus       322 ~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~  369 (373)
T d2madh_         322 AISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSV  369 (373)
T ss_pred             EEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEE
Confidence            9999999986 4568889999999999999999999988776788876

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.99  E-value=3.8e-09  Score=107.66  Aligned_cols=136  Identities=13%  Similarity=0.073  Sum_probs=101.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE--Eeccc----------CCCeEEEEEcCCCCEEEEEeCC---
Q 005473          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEH----------TQWITDVRFSPSLSRLATSSAD---  618 (695)
Q Consensus       554 H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~--~l~~H----------~~~V~~v~~spdg~~LaTgs~D---  618 (695)
                      +...+.++.+.+++..++.++.++.+++|++..++...  ....|          ......+++++++..++....+   
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~  272 (355)
T d2bbkh_         193 DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDE  272 (355)
T ss_dssp             TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCT
T ss_pred             ecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCc
Confidence            44456677888899999999999999999998765432  22222          1233468899998887765433   


Q ss_pred             -------CeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCe-EEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEE
Q 005473          619 -------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-LLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVR  690 (695)
Q Consensus       619 -------gtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~-llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVa  690 (695)
                             ..|++||+.+++. +..+.. ...+.+++|+|||+. ++++++.|+.|+|||+.+++.++++.++...-..|.
T Consensus       273 ~~~~~~~~~v~v~d~~t~~~-~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~  350 (355)
T d2bbkh_         273 WRHKTASRFVVVLDAKTGER-LAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVIT  350 (355)
T ss_dssp             TCTTSCEEEEEEEETTTCCE-EEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEE
T ss_pred             eeecCCCCeEEEEeCCCCcE-EEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEE
Confidence                   3699999998775 555543 356889999999985 567788899999999999999999987655445565


Q ss_pred             E
Q 005473          691 V  691 (695)
Q Consensus       691 f  691 (695)
                      +
T Consensus       351 ~  351 (355)
T d2bbkh_         351 T  351 (355)
T ss_dssp             C
T ss_pred             e
Confidence            5

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.97  E-value=8.2e-09  Score=106.23  Aligned_cols=127  Identities=9%  Similarity=-0.034  Sum_probs=96.2

Q ss_pred             eEEEecCCCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCeEEEEecccCCCe-------EEEEEcCCC
Q 005473          547 EFQLIPASTSKVESCHFSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEHTQWI-------TDVRFSPSL  609 (695)
Q Consensus       547 ~v~~l~~H~~~V~~v~fspdg~~LaSgs~----------Dg~V~IWDl~t~~~~~~l~~H~~~V-------~~v~~spdg  609 (695)
                      .+..+..+..  ..++|+|||++|++++.          ++.|.|||+.+++++..+..+....       ..+.|++++
T Consensus        59 ~~~~~~~~~~--~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg  136 (373)
T d2madh_          59 ILGHVNGGFL--PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNN  136 (373)
T ss_pred             EEEEEeCCCC--ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCC
Confidence            4445555554  37999999999998753          5789999999999998887765544       346788888


Q ss_pred             CEEEEEe--CCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473          610 SRLATSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  680 (695)
Q Consensus       610 ~~LaTgs--~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~  680 (695)
                      +.++...  .+..+.+|+....+. .    .+...+.++.|+|+++.++++.+.|+.+.+||...+++.....
T Consensus       137 ~~~~v~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~  204 (373)
T d2madh_         137 ADLLFFQFAAGPAVGLVVQGGSSD-D----QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLV  204 (373)
T ss_pred             CcEEEEEEcCCCceEEeeccCCeE-E----EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEe
Confidence            7665543  456788888876443 2    2334567899999999898999999999999999887776654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.74  E-value=1.7e-08  Score=108.46  Aligned_cols=117  Identities=17%  Similarity=0.104  Sum_probs=88.5

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEeC---------CCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeE
Q 005473          551 IPASTSKVESCHFSPDGKLLATGGH---------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV  621 (695)
Q Consensus       551 l~~H~~~V~~v~fspdg~~LaSgs~---------Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtI  621 (695)
                      +..|...|.++.|||||++|+.++.         ++.+.|||+.+++. ..+..|...+..+.|+|||..||... ++.+
T Consensus        57 ~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l  134 (470)
T d2bgra1          57 FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVW-NNDI  134 (470)
T ss_dssp             TTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEE-TTEE
T ss_pred             hhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEee-cccc
Confidence            3556678999999999999998854         46789999998875 46788899999999999999999864 7789


Q ss_pred             EEEECCCCCeeEEEEe-c-----------------CCCCeEEEEEecCCCeEEEEEeCCCcEEEEEC
Q 005473          622 RVWDTENPDYSLRTFT-G-----------------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI  670 (695)
Q Consensus       622 rvWDl~t~~~~l~~~~-g-----------------h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl  670 (695)
                      ++|+..++.. ++... +                 +.+....+.|+|||+.+++....+..|..|++
T Consensus       135 ~~~~~~~g~~-~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         135 YVKIEPNLPS-YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             EEESSTTSCC-EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred             eEEECCCCce-eeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEE
Confidence            9999988764 22211 1                 12334668899999977766555555655543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.74  E-value=3.9e-08  Score=99.87  Aligned_cols=123  Identities=11%  Similarity=-0.018  Sum_probs=93.4

Q ss_pred             eEEEEEcCCCCEEEEEe-----CCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEE----------eCCCeEE
Q 005473          558 VESCHFSPDGKLLATGG-----HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS----------SADRTVR  622 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs-----~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTg----------s~DgtIr  622 (695)
                      +.-.+.+||++.+++..     .+..|.|||..+++.+.++..+..  ..++|+|||++|++.          +.|+.|+
T Consensus         4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~   81 (355)
T d2bbkh_           4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYVE   81 (355)
T ss_dssp             CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEEE
Confidence            34446689999887764     356799999999999998876544  479999999988764          3478999


Q ss_pred             EEECCCCCeeEEEEecCC-------CCeEEEEEecCCCeEEEEE-eCCCcEEEEECCCCeEEEEEecCC
Q 005473          623 VWDTENPDYSLRTFTGHS-------TTVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKNFF  683 (695)
Q Consensus       623 vWDl~t~~~~l~~~~gh~-------~~V~sl~fspdg~~llaSg-s~Dg~IriWDl~tg~~v~~~~~h~  683 (695)
                      +||+.+++. +..+..+.       .....++|+|++..+++.. +.+..+++||..+++.+..+..+.
T Consensus        82 v~D~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (355)
T d2bbkh_          82 VFDPVTLLP-TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD  149 (355)
T ss_dssp             EECTTTCCE-EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS
T ss_pred             EEECCCCCE-EEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCC
Confidence            999998774 55554332       2245689999999766543 457789999999999988887553

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.72  E-value=2.1e-08  Score=107.69  Aligned_cols=116  Identities=16%  Similarity=0.102  Sum_probs=93.9

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecc-----cCCCeEEEEEcCCCCEEEEEeC---------CCeEEEE
Q 005473          559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPSLSRLATSSA---------DRTVRVW  624 (695)
Q Consensus       559 ~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~-----H~~~V~~v~~spdg~~LaTgs~---------DgtIrvW  624 (695)
                      ..+.|.+++++++.  .|+.|.+||+.+++....+..     |...|.++.|+||+++|+.++.         ++.++||
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            45889999988764  478899999999988766644     4578999999999999988753         5678999


Q ss_pred             ECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  680 (695)
Q Consensus       625 Dl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~  680 (695)
                      |+.++.  +..+..|...+..+.|+|||..+++.  .++.|++|+..+++.+....
T Consensus        98 d~~~~~--~~~l~~~~~~~~~~~~SPDG~~ia~~--~~~~l~~~~~~~g~~~~~t~  149 (470)
T d2bgra1          98 DLNKRQ--LITEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITW  149 (470)
T ss_dssp             ETTTTE--ECCSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCS
T ss_pred             ECCCCc--ccccccCCccccccccccCcceeeEe--ecccceEEECCCCceeeeee
Confidence            999854  46678889999999999999976643  47789999999887765443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.63  E-value=1.5e-07  Score=97.36  Aligned_cols=133  Identities=4%  Similarity=-0.072  Sum_probs=91.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe--ccc----------CCCeEEEEEcCCCCEEEEEeCC---
Q 005473          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEH----------TQWITDVRFSPSLSRLATSSAD---  618 (695)
Q Consensus       554 H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l--~~H----------~~~V~~v~~spdg~~LaTgs~D---  618 (695)
                      +...+..+.+.+++..+++.  ++.++++++.........  ..+          .+....+++++++..++....+   
T Consensus       210 ~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~  287 (368)
T d1mdah_         210 QNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSR  287 (368)
T ss_dssp             SCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSS
T ss_pred             cccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCc
Confidence            44455677788887766655  355666666554433221  111          1223457889988877655322   


Q ss_pred             ------CeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCe-EEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473          619 ------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-LLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       619 ------gtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~-llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf  691 (695)
                            ..|++||..+++. +..+. +...+.+++|+|||+. +++++..|+.|+|||..+++++.++..+..+ +.|++
T Consensus       288 ~~~~~~~~v~v~D~~t~~~-~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P-~~l~~  364 (368)
T d1mdah_         288 SCLAAAENTSSVTASVGQT-SGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP-ESLSV  364 (368)
T ss_dssp             CTTSCEEEEEEEESSSCCE-EECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCC-CEEEC
T ss_pred             eeecCCceEEEEECCCCcE-eEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCCC-CEEEE
Confidence                  3599999998774 55554 3356889999999975 5678888999999999999999999876554 66766

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.46  E-value=5.6e-07  Score=93.00  Aligned_cols=127  Identities=13%  Similarity=-0.099  Sum_probs=94.9

Q ss_pred             CCCCeEEEEEcCCCCEEEE---EeCCC--cEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEe----------CC
Q 005473          554 STSKVESCHFSPDGKLLAT---GGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------AD  618 (695)
Q Consensus       554 H~~~V~~v~fspdg~~LaS---gs~Dg--~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs----------~D  618 (695)
                      +.++...++..++++..+.   +..++  .|.+||..+++.+.++..+...  .++|+|||+.|++++          .|
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d   95 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT   95 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence            4455566667788875322   23344  4777799999999888776654  589999999888754          37


Q ss_pred             CeEEEEECCCCCeeEEEEecCCC-------CeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCC
Q 005473          619 RTVRVWDTENPDYSLRTFTGHST-------TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFF  683 (695)
Q Consensus       619 gtIrvWDl~t~~~~l~~~~gh~~-------~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~  683 (695)
                      ++|++||..+.+. +..+..+..       ....++|+|||++++++...++.|.+||+.+++.+..+..+.
T Consensus        96 ~~v~v~D~~t~~~-~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~  166 (368)
T d1mdah_          96 DYVEVFDPVTFLP-IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSAS  166 (368)
T ss_dssp             EEEEEECTTTCCE-EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSS
T ss_pred             CeEEEEECCCCcE-eeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccC
Confidence            7899999998764 565554332       234689999999888777778999999999999999887554

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.33  E-value=3.4e-05  Score=80.19  Aligned_cols=137  Identities=8%  Similarity=-0.051  Sum_probs=89.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEec-------------------ccCCCeEEEEEcCCCCEEEE
Q 005473          555 TSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLE-------------------EHTQWITDVRFSPSLSRLAT  614 (695)
Q Consensus       555 ~~~V~~v~fspdg~~LaSgs-~Dg~V~IWDl~t~~~~~~l~-------------------~H~~~V~~v~~spdg~~LaT  614 (695)
                      ......++|+|+++++++.. .+++|.+||+...+......                   .+......+.++|+|++|++
T Consensus       192 g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyv  271 (365)
T d1jofa_         192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA  271 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEE
Confidence            34578999999999886666 57999999987654321111                   11233567899999999988


Q ss_pred             EeC------CCeEEEEECCCCCeeEE-----EEecCCCCeEEEEEec-CCCeEEEEEeCCCcEEEEECCCCe--EEEEEe
Q 005473          615 SSA------DRTVRVWDTENPDYSLR-----TFTGHSTTVMSLDFHP-SKEDLLCSCDNNSEIRYWSINNGS--CAGVFK  680 (695)
Q Consensus       615 gs~------DgtIrvWDl~t~~~~l~-----~~~gh~~~V~sl~fsp-dg~~llaSgs~Dg~IriWDl~tg~--~v~~~~  680 (695)
                      +..      .+.|..|++........     ..........+++|+| +|+++++++..++.|.+|+++...  .+..+.
T Consensus       272 snr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l~~~~~~~  351 (365)
T d1jofa_         272 SSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHRVARVR  351 (365)
T ss_dssp             EEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEEEEEEEEE
T ss_pred             EcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcCcEEEEEE
Confidence            743      23488888765443111     1112334567899998 788888888899999999886543  344443


Q ss_pred             cC-CCcEEEEEE
Q 005473          681 NF-FESFVSVRV  691 (695)
Q Consensus       681 ~h-~~~VtsVaf  691 (695)
                      .. -....++.|
T Consensus       352 vp~p~~~~~~~w  363 (365)
T d1jofa_         352 IPEPGFGMNAIW  363 (365)
T ss_dssp             CCSTTEEEEEEE
T ss_pred             CCCCCCCeEEEe
Confidence            22 233344555

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.25  E-value=6.1e-06  Score=88.52  Aligned_cols=139  Identities=10%  Similarity=0.018  Sum_probs=99.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEec-ccCCCeEEEEEcCCCC--EEEEEeCCC---------
Q 005473          553 ASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLS--RLATSSADR---------  619 (695)
Q Consensus       553 ~H~~~V~~v~fspdg~~LaSgs-~Dg~V~IWDl~t~~~~~~l~-~H~~~V~~v~~spdg~--~LaTgs~Dg---------  619 (695)
                      .|...+.+..++|||++|+++. .+..|.++|++++++...++ .+...+..++|+|+++  +++..+.+.         
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~  148 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTD  148 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccc
Confidence            4555567777789999987765 57899999999999888774 4677899999999988  444444332         


Q ss_pred             --------eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeC------------------------------
Q 005473          620 --------TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN------------------------------  661 (695)
Q Consensus       620 --------tIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~------------------------------  661 (695)
                              .+..+|..+.+. ...+... +.+..++|+|+|+++++++..                              
T Consensus       149 ~~~~~~~~~~~~iD~~t~~v-~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~  226 (441)
T d1qnia2         149 FSLDNSYTMFTAIDAETMDV-AWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAV  226 (441)
T ss_dssp             CCGGGEEEEEEEEETTTCSE-EEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHH
T ss_pred             cccccccceEEeecCcccee-eEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEe
Confidence                    245688887665 3333322 457889999999988877643                              


Q ss_pred             ----------CCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          662 ----------NSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       662 ----------Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                                ++.+.|++....+.+..+..+..+ ..|++ +||
T Consensus       227 ~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksP-hGv~v-SPD  268 (441)
T d1qnia2         227 KAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNP-HGLNT-SPD  268 (441)
T ss_dssp             HTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSC-CCEEE-CTT
T ss_pred             cCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCc-cCceE-CCC
Confidence                      345666666666777778766654 66777 775

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.07  E-value=0.00019  Score=69.36  Aligned_cols=143  Identities=13%  Similarity=0.032  Sum_probs=89.9

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEE--ECCCCeEEEEecccCCCeEEEEEcCCCCEE-EEEeCCCe--EE
Q 005473          549 QLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLW--CTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRT--VR  622 (695)
Q Consensus       549 ~~l~~H~~~V~~v~fspdg~~LaSgs~-Dg~V~IW--Dl~t~~~~~~l~~H~~~V~~v~~spdg~~L-aTgs~Dgt--Ir  622 (695)
                      ..+..+.+.+.+..|+|+|+.|+.... ++...++  ...... ......+........+++++..+ ++...++.  |.
T Consensus        76 ~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~  154 (269)
T d2hqsa1          76 RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVY  154 (269)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred             eEEeeeecccccceecCCCCeeeEeeecCCccceeeccccccc-ceeeeeccccccccccccccccceecccccCCceEe
Confidence            344566777899999999998876654 3333333  322222 33333445556666778876655 44445554  55


Q ss_pred             EEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       623 vWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ++++....  ......+........|+|++..+++....++...+|.+...........+...+....| +||
T Consensus       155 ~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~-SPD  224 (269)
T d2hqsa1         155 KVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSL-APN  224 (269)
T ss_dssp             EEETTSSC--CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEE-CTT
T ss_pred             eeeccccc--ceeeecccccccccccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEE-CCC
Confidence            66666543  34455566777888999999988888777777666665543323334445556677889 886

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=0.00061  Score=65.62  Aligned_cols=137  Identities=10%  Similarity=-0.009  Sum_probs=90.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEE-eCCCc--EEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCC-Ce--EEEEEC
Q 005473          553 ASTSKVESCHFSPDGKLLATG-GHDKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RT--VRVWDT  626 (695)
Q Consensus       553 ~H~~~V~~v~fspdg~~LaSg-s~Dg~--V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~D-gt--IrvWDl  626 (695)
                      .+........+++++..++.. ..++.  |.++++..... ..+..+...+....|+|++..++..+.+ +.  |.+.|.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~  202 (269)
T d2hqsa1         124 DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL  202 (269)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred             eccccccccccccccccceecccccCCceEeeeecccccc-eeeecccccccccccccccceeEEEeecCCceeeeEeec
Confidence            344445666788877755444 44554  55556655433 3445566778889999999988776544 44  444454


Q ss_pred             CCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC--CcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       627 ~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D--g~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ..+.  . ....+...+....|+|||+.|+++....  ..|++|++..+.. ..+....+.+...+| +|.
T Consensus       203 ~~~~--~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~~g~~~~p~W-SP~  268 (269)
T d2hqsa1         203 ATGG--V-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPATDGQVKFPAW-SPY  268 (269)
T ss_dssp             TTCC--E-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EECCCSSSEEEEEEE-CCC
T ss_pred             cccc--c-eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEEeCCCCcEEeEEe-CCC
Confidence            4432  3 3334556778899999999887776543  4688999986654 556666778888999 994

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.93  E-value=0.00017  Score=72.29  Aligned_cols=126  Identities=13%  Similarity=0.120  Sum_probs=93.9

Q ss_pred             eEEEecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 005473          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (695)
Q Consensus       547 ~v~~l~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl  626 (695)
                      .+..+...+ .+..++++|||+++++...+++|+.||....  ...+......+.+++|+++|+++++...++.+.+|+.
T Consensus        20 v~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~   96 (302)
T d2p4oa1          20 IITSFPVNT-FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSL   96 (302)
T ss_dssp             EEEEECTTC-CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred             EEEECCCCC-CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEe
Confidence            344444333 5889999999999999999999998886543  3344556778999999999999999888888888887


Q ss_pred             CCCCeeEEEEe--cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEE
Q 005473          627 ENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA  676 (695)
Q Consensus       627 ~t~~~~l~~~~--gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v  676 (695)
                      .........+.  .....+..+++.+++. ++++.+.++.|..+|...+...
T Consensus        97 ~~~~~~~~~~~~~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~  147 (302)
T d2p4oa1          97 VKSDGTVETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGS  147 (302)
T ss_dssp             ECTTSCEEEEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEE
T ss_pred             cccccceeeccccCCccccceeEEccCCC-EEeeccccccceeeeccCCcce
Confidence            65433233332  2345678999999986 6667778889999998876533

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.84  E-value=0.00028  Score=70.63  Aligned_cols=119  Identities=17%  Similarity=0.144  Sum_probs=84.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eEEEEe-cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 005473          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  629 (695)
Q Consensus       553 ~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~--~~~~~l-~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~  629 (695)
                      .....+.+++|+++|+++++...++.+.+|+....  ...... ......+..+++.++++++++.+.++.|+.+|...+
T Consensus        65 ~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~  144 (302)
T d2p4oa1          65 TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP  144 (302)
T ss_dssp             ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred             cCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCC
Confidence            34456899999999999998888888888876432  222111 234566889999999998888888999999999876


Q ss_pred             CeeEEEEec-------CC--CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 005473          630 DYSLRTFTG-------HS--TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG  673 (695)
Q Consensus       630 ~~~l~~~~g-------h~--~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg  673 (695)
                      ...+.....       +.  ..+..+.+.  +..++++.+..+.|+.+++...
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~  195 (302)
T d2p4oa1         145 SGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDST  195 (302)
T ss_dssp             EEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTT
T ss_pred             cceeEecCCccceeeccCccccccccccc--CCceeeecCCCCeEEecccccc
Confidence            543322221       11  234455554  5568888888999999998653

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.83  E-value=0.00069  Score=69.94  Aligned_cols=118  Identities=13%  Similarity=0.083  Sum_probs=78.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCC-eEE--EEe--cccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECC
Q 005473          555 TSKVESCHFSPDGKLLATGGH-DKKAVLWCTESF-TVK--STL--EEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTE  627 (695)
Q Consensus       555 ~~~V~~v~fspdg~~LaSgs~-Dg~V~IWDl~t~-~~~--~~l--~~H~~~V~~v~~spdg~~LaTgs-~DgtIrvWDl~  627 (695)
                      ...+.++.|+|||++|++++. ...|.+|+.... ...  ..+  .........++|+|+++++++.. .+++|.+||+.
T Consensus       144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec
Confidence            334889999999998888875 457888876532 222  122  22346788999999999886655 58899999997


Q ss_pred             CCCee-EEE---Ee--------------cCCCCeEEEEEecCCCeEEEEEeCCC-----cEEEEECCC
Q 005473          628 NPDYS-LRT---FT--------------GHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINN  672 (695)
Q Consensus       628 t~~~~-l~~---~~--------------gh~~~V~sl~fspdg~~llaSgs~Dg-----~IriWDl~t  672 (695)
                      ..... +..   ..              .+......+.|+|||+.++++.-.+.     .|.+|++..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~  291 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD  291 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT
T ss_pred             CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecC
Confidence            65432 111   11              11123567899999998777654333     377788764

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.83  E-value=0.00041  Score=67.87  Aligned_cols=137  Identities=10%  Similarity=0.010  Sum_probs=94.0

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEE
Q 005473          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~  635 (695)
                      ....+|++.++++++++-..+..+.+++............-......|++.++++++++...++.|..+|.+.... ...
T Consensus        98 ~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~-~~~  176 (260)
T d1rwia_          98 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ-VVL  176 (260)
T ss_dssp             CSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE-EEC
T ss_pred             eecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccccccee-eee
Confidence            4478999999999887766677788887765443222222234567899999999888888889999999886443 222


Q ss_pred             EecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       636 ~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ..........|++.++|. |+++....+.|..++.............-...+.|++ +++
T Consensus       177 ~~~~~~~p~gi~~d~~g~-l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~-d~~  234 (260)
T d1rwia_         177 PFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAV-DSD  234 (260)
T ss_dssp             CCSSCCSEEEEEECTTCC-EEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEE-CTT
T ss_pred             eccccCCCccceeeeeee-eeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEE-eCC
Confidence            224456678999999986 7778888888988887644322221223344578888 664

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.75  E-value=0.0013  Score=64.78  Aligned_cols=136  Identities=13%  Similarity=0.248  Sum_probs=100.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe--cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 005473          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (695)
Q Consensus       554 H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l--~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~  631 (695)
                      ......++++.++|+++++....+.+.+++.. ++.+..+  ..+......+++.+++.++++....+.|++||... +.
T Consensus       112 ~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G-~~  189 (279)
T d1q7fa_         112 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QY  189 (279)
T ss_dssp             TCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CE
T ss_pred             cccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccceeeeecCC-ce
Confidence            34557889999999988887777888888864 5666655  44567788999999998888888889999999864 43


Q ss_pred             eEEEEe--cCCCCeEEEEEecCCCeEEEEE-eCCCcEEEEECCCCeEEEEEecC--CCcEEEEEEeCCC
Q 005473          632 SLRTFT--GHSTTVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKNF--FESFVSVRVVQPR  695 (695)
Q Consensus       632 ~l~~~~--gh~~~V~sl~fspdg~~llaSg-s~Dg~IriWDl~tg~~v~~~~~h--~~~VtsVaf~sPd  695 (695)
                       +..+.  ++......|++.++|. ++++- ..++.|.+|+ .+|+.+.++...  ....+.|++ .|+
T Consensus       190 -~~~~g~~g~~~~P~giavD~~G~-i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav-~~d  254 (279)
T d1q7fa_         190 -LRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVAL-MDD  254 (279)
T ss_dssp             -EEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEE-ETT
T ss_pred             -eeeecccccccCCcccccccCCe-EEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEE-eCC
Confidence             55553  3445678999999998 55454 3456799999 568888877633  234577887 664

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.71  E-value=8.7e-05  Score=79.31  Aligned_cols=123  Identities=11%  Similarity=-0.013  Sum_probs=89.1

Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEecc------------------------------cCCCeEEEEEcCCCCEEEEEe-CC
Q 005473          570 LATGGHDKKAVLWCTESFTVKSTLEE------------------------------HTQWITDVRFSPSLSRLATSS-AD  618 (695)
Q Consensus       570 LaSgs~Dg~V~IWDl~t~~~~~~l~~------------------------------H~~~V~~v~~spdg~~LaTgs-~D  618 (695)
                      ++|++.+|.|+|||+.+++.+.++.-                              |.-.+.+..+.|||++|++.. .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            66888999999999999988877631                              223344555578999886664 67


Q ss_pred             CeEEEEECCCCCeeEEEEe-cCCCCeEEEEEecCCCeEEEEEeCCCcE------------------EEEECCCCeEEEEE
Q 005473          619 RTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEI------------------RYWSINNGSCAGVF  679 (695)
Q Consensus       619 gtIrvWDl~t~~~~l~~~~-gh~~~V~sl~fspdg~~llaSgs~Dg~I------------------riWDl~tg~~v~~~  679 (695)
                      .+|.+||+++.+. ...+. .+...+..++|+|+++..++++..+..+                  ..+|..+.+.+..+
T Consensus        94 ~rVavIDl~t~k~-~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI  172 (441)
T d1qnia2          94 TRVARIRLDIMKT-DKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV  172 (441)
T ss_dssp             TEEEEEETTTTEE-EEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred             CEEEEEECCCCcE-eeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence            8999999998764 44443 4567899999999998765555544444                  55888888887777


Q ss_pred             ecCCCcEEEEEEeCCC
Q 005473          680 KNFFESFVSVRVVQPR  695 (695)
Q Consensus       680 ~~h~~~VtsVaf~sPd  695 (695)
                      .... .+..++| +|+
T Consensus       173 ~v~~-~p~~v~~-spd  186 (441)
T d1qnia2         173 IVDG-NLDNTDA-DYT  186 (441)
T ss_dssp             EESS-CCCCEEE-CSS
T ss_pred             ecCC-CccceEE-CCC
Confidence            6554 3467887 775

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.71  E-value=0.00067  Score=66.29  Aligned_cols=134  Identities=7%  Similarity=0.034  Sum_probs=90.2

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEe
Q 005473          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~  637 (695)
                      ...|+++++|+++++....+.|++++-.+...+.... ......+|++.++++++++-..+..+.+++............
T Consensus        59 p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~  137 (260)
T d1rwia_          59 PQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT  137 (260)
T ss_dssp             CCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCC
T ss_pred             ceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeee-eeeecccccccccceeEeeccccccccccccccceeeeeeec
Confidence            4678999999988777767777776655544443332 235678999999998888777777788888766443222222


Q ss_pred             cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       638 gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      + ......+++.+++. ++++...++.|..||...................|++ +|+
T Consensus       138 ~-~~~p~~i~~~~~g~-~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~-d~~  192 (260)
T d1rwia_         138 G-LNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAV-DEA  192 (260)
T ss_dssp             S-CCSCCEEEECTTCC-EEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEE-CTT
T ss_pred             c-cCCcceeeecCCCC-EeeeccccccccccccccceeeeeeccccCCCcccee-eee
Confidence            2 24567899999987 6767788889999998754333322244445577777 653

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.57  E-value=0.01  Score=59.58  Aligned_cols=135  Identities=10%  Similarity=0.067  Sum_probs=88.7

Q ss_pred             CCeEEEEEcCCCCEEEEEeCC------CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCC
Q 005473          556 SKVESCHFSPDGKLLATGGHD------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTEN  628 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs~D------g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~L-aTgs~DgtIrvWDl~t  628 (695)
                      ..+..+++.++|++.++....      +.+..++.+... +..+...-...+.|+|+|+++.| ++-+..+.|+.||++.
T Consensus       130 ~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~  208 (319)
T d2dg1a1         130 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED  208 (319)
T ss_dssp             CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             cCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcC
Confidence            347889999999977664321      234444544333 33333333456789999999866 4446688999999875


Q ss_pred             CCeeEEE-------EecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEec------CCCcEEEEEEeCC
Q 005473          629 PDYSLRT-------FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKN------FFESFVSVRVVQP  694 (695)
Q Consensus       629 ~~~~l~~-------~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~------h~~~VtsVaf~sP  694 (695)
                      .......       ........-.+++..+|. |+++....+.|.+||- .|+.+..+..      +...+++++| .|
T Consensus       209 ~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~-~~  284 (319)
T d2dg1a1         209 DGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQF-IP  284 (319)
T ss_dssp             TSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEE-CT
T ss_pred             CCceeccccceeeeccCCccceeeeeEcCCCC-EEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEE-eC
Confidence            4321111       111112356799999997 6667778899999995 6888888863      3345788888 66

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.54  E-value=0.0071  Score=59.26  Aligned_cols=119  Identities=4%  Similarity=0.071  Sum_probs=88.6

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe--cccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCC
Q 005473          552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTEN  628 (695)
Q Consensus       552 ~~H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l--~~H~~~V~~v~~spdg~~LaTgs~-DgtIrvWDl~t  628 (695)
                      ..+......+++.++++++++....+.|++||.. ++.+..+  .++......|++.++|+++++-+. ++.|.+|+.. 
T Consensus       153 ~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-  230 (279)
T d1q7fa_         153 SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-  230 (279)
T ss_dssp             TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-
T ss_pred             cccccccceeeeccceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-
Confidence            3456678899999999988888888999999975 5666666  345566889999999997777544 4579999865 


Q ss_pred             CCeeEEEEecC--CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeE
Q 005473          629 PDYSLRTFTGH--STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC  675 (695)
Q Consensus       629 ~~~~l~~~~gh--~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~  675 (695)
                      ++. +.++...  ......|++.|+|. |+++ +.++.|++|......+
T Consensus       231 G~~-~~~~~~~~~~~~p~~vav~~dG~-l~V~-~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         231 GQL-ISALESKVKHAQCFDVALMDDGS-VVLA-SKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             SCE-EEEEEESSCCSCEEEEEEETTTE-EEEE-ETTTEEEEEECSCCCC
T ss_pred             CCE-EEEEeCCCCCCCEeEEEEeCCCc-EEEE-eCCCeEEEEEeeeecC
Confidence            453 5555432  34678999999986 5544 4689999999876543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.45  E-value=0.0057  Score=61.50  Aligned_cols=134  Identities=16%  Similarity=0.219  Sum_probs=89.0

Q ss_pred             eEEEEEcCCCCEEEEEeC---------------CCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCC-----EEEEEeC
Q 005473          558 VESCHFSPDGKLLATGGH---------------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-----RLATSSA  617 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~---------------Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~-----~LaTgs~  617 (695)
                      .+.+++.++|++.++-..               +|.|..++.+ ++..... ..-..-+.++|+|++.     ++++-+.
T Consensus       119 pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~  196 (314)
T d1pjxa_         119 CNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETP  196 (314)
T ss_dssp             CCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETT
T ss_pred             CcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEee-CCcceeeeeEECCCCCcceeEEEEEeec
Confidence            578999999998777432               2334444433 3333222 2333456789988754     4455567


Q ss_pred             CCeEEEEECCCCCeeE-----EEEec-CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473          618 DRTVRVWDTENPDYSL-----RTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       618 DgtIrvWDl~t~~~~l-----~~~~g-h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf  691 (695)
                      .+.|+.||+.......     ..+.+ +....-.+++..+|. |+++....+.|.+||.+.++.+..+..+...+++|+|
T Consensus       197 ~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn-lyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~af  275 (314)
T d1pjxa_         197 TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHF  275 (314)
T ss_dssp             TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEE
T ss_pred             ccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc-EEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEE
Confidence            8899999986544311     11111 122356789999987 6667767889999999888888888877778899999


Q ss_pred             eCCC
Q 005473          692 VQPR  695 (695)
Q Consensus       692 ~sPd  695 (695)
                       .|+
T Consensus       276 -g~d  278 (314)
T d1pjxa_         276 -KPQ  278 (314)
T ss_dssp             -CTT
T ss_pred             -eCC
Confidence             875

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.36  E-value=0.0068  Score=60.86  Aligned_cols=137  Identities=8%  Similarity=0.056  Sum_probs=87.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCC----CeEEEEECCCC
Q 005473          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENP  629 (695)
Q Consensus       554 H~~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~D----gtIrvWDl~t~  629 (695)
                      ....+..++|.++|+++++-..++.|+.||..+.+....+.........++++++|+++++...+    +.|...|....
T Consensus        38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence            34456899999999988877788999999988877666665666778999999999888776432    33555555543


Q ss_pred             CeeEEEEecC---CCCeEEEEEecCCCeEEEEEeC------CCcEEEEECCCCeEEEEEecCCCcEEEEEEeCCC
Q 005473          630 DYSLRTFTGH---STTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKNFFESFVSVRVVQPR  695 (695)
Q Consensus       630 ~~~l~~~~gh---~~~V~sl~fspdg~~llaSgs~------Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sPd  695 (695)
                      ..  .....+   ...+..+++.++|. ++++...      .+.|..++...+. +..+...-.....|+| +|+
T Consensus       118 ~~--~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~-s~d  187 (319)
T d2dg1a1         118 NL--QDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIAL-STD  187 (319)
T ss_dssp             SC--EEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEE-CTT
T ss_pred             ee--eeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccce-eEEEeeccceeeeeee-ccc
Confidence            32  222222   23467899999997 5545322      2346666654333 3222222223366777 764

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.26  E-value=0.0018  Score=65.31  Aligned_cols=113  Identities=10%  Similarity=0.091  Sum_probs=82.4

Q ss_pred             eEEEEEcCCCC----EE-EEEeCCCcEEEEECCCCeEE------EEecc-cCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 005473          558 VESCHFSPDGK----LL-ATGGHDKKAVLWCTESFTVK------STLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (695)
Q Consensus       558 V~~v~fspdg~----~L-aSgs~Dg~V~IWDl~t~~~~------~~l~~-H~~~V~~v~~spdg~~LaTgs~DgtIrvWD  625 (695)
                      -+.++|++++.    +| ++-+..+.|..||+.....+      ..+.+ +....-.+++..+|+++++....+.|.+||
T Consensus       174 pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~d  253 (314)
T d1pjxa_         174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFG  253 (314)
T ss_dssp             EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             eeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEe
Confidence            46789988764    44 44456788998887533222      12221 223356799999999888888889999999


Q ss_pred             CCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECC
Q 005473          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (695)
Q Consensus       626 l~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~  671 (695)
                      .+.+.. +..+......+++++|.|+++.|+++.+.++.|..+++.
T Consensus       254 p~~g~~-~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         254 PDGGQP-KMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             TTCBSC-SEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCCCEE-EEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            887553 555665667889999999998888898888989888875

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.10  E-value=0.013  Score=58.12  Aligned_cols=132  Identities=8%  Similarity=0.022  Sum_probs=94.6

Q ss_pred             CeEEEEEcCCCCEEEEEeCC----CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCC-
Q 005473          557 KVESCHFSPDGKLLATGGHD----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPD-  630 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~D----g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~L-aTgs~DgtIrvWDl~t~~-  630 (695)
                      .++.+.+.++|++.++...+    +.-.+|.+..++....+.. -.....++|+++++.+ ++-+..+.|+.|+++... 
T Consensus       104 ~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~  182 (295)
T d2ghsa1         104 RSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTG  182 (295)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTC
T ss_pred             cceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeeccccc
Confidence            47889999999977765432    3556777777766555543 3456789999998865 555667889999875321 


Q ss_pred             ------eeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473          631 ------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       631 ------~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf  691 (695)
                            .....+.+..+..-.+++..+|. |+++.-..+.|.+|| ..|+.+..+......+++++|
T Consensus       183 ~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn-lWva~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~~~F  247 (295)
T d2ghsa1         183 LPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYD-TDGNHIARYEVPGKQTTCPAF  247 (295)
T ss_dssp             CBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEEC-TTCCEEEEEECSCSBEEEEEE
T ss_pred             ccccceEEEeccCcccccccceEEcCCCC-EEeeeeCCCceEEec-CCCcEeeEecCCCCceEEEEE
Confidence                  11122333445678899999987 666666678999999 468999999877778899998

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00086  Score=71.81  Aligned_cols=113  Identities=13%  Similarity=0.055  Sum_probs=77.4

Q ss_pred             CeEEEEEcCCCCEEEEEeC---------CCcEEEEECCCCeEEEEe--cccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 005473          557 KVESCHFSPDGKLLATGGH---------DKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~---------Dg~V~IWDl~t~~~~~~l--~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWD  625 (695)
                      .+....||||+++|+.+..         .+.+.|||+.++......  ......+....|+|||..||... ++.|++.+
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~  140 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCA  140 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEES
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEe
Confidence            4677889999998877643         467889999887754332  22345566789999999998875 67789998


Q ss_pred             CCCCCeeEEEEecCCCCe-----------------EEEEEecCCCeEEEEEeCCCcEEEEEC
Q 005473          626 TENPDYSLRTFTGHSTTV-----------------MSLDFHPSKEDLLCSCDNNSEIRYWSI  670 (695)
Q Consensus       626 l~t~~~~l~~~~gh~~~V-----------------~sl~fspdg~~llaSgs~Dg~IriWDl  670 (695)
                      ...+.....+..+..+.|                 ..+.|+|||+.|++.--.+..|..|.+
T Consensus       141 ~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~  202 (465)
T d1xfda1         141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMEL  202 (465)
T ss_dssp             SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred             cCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeec
Confidence            876554222322222222                 467799999988876655665555543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.00088  Score=71.73  Aligned_cols=115  Identities=13%  Similarity=0.142  Sum_probs=81.3

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEeccc---CCCeEEEEEcCCCCEEEEEe---------CCCeEEEEECCC
Q 005473          561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH---TQWITDVRFSPSLSRLATSS---------ADRTVRVWDTEN  628 (695)
Q Consensus       561 v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H---~~~V~~v~~spdg~~LaTgs---------~DgtIrvWDl~t  628 (695)
                      +.|.+++.+++. ..||.|.+||+.+++....+..+   ...+....|+||+++|+...         ..+.+.+||+.+
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            468888877654 45788999999887765444332   23577888999999887763         357789999998


Q ss_pred             CCeeEEEEe---cCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473          629 PDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  680 (695)
Q Consensus       629 ~~~~l~~~~---gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~  680 (695)
                      +..  ..+.   .....+....|+|||+.+++..  ++.|.+.+..++..++...
T Consensus       101 ~~~--~~l~~~~~~~~~l~~~~wSPDG~~iafv~--~~nl~~~~~~~~~~~~lt~  151 (465)
T d1xfda1         101 GDP--QSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCAHVGKQAIRVVS  151 (465)
T ss_dssp             CCC--EECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEESSSSSCCEEEEC
T ss_pred             Cce--eeccCccCCccccceeeeccCCceEEEEe--cceEEEEecCCCceEEEec
Confidence            653  2232   2234566789999999877654  5679999988776655443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.85  E-value=0.006  Score=58.22  Aligned_cols=110  Identities=13%  Similarity=0.099  Sum_probs=72.8

Q ss_pred             EEcCC--CCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeC-CC-----eEEEEECCCCCeeE
Q 005473          562 HFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR-----TVRVWDTENPDYSL  633 (695)
Q Consensus       562 ~fspd--g~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~-Dg-----tIrvWDl~t~~~~l  633 (695)
                      ..+||  |+.|+-.+ ++.|.+.|+.+++.. .|..+.+.+...+|||||+.||.... ++     .|.++++.++..  
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~--   80 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI--   80 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE--
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce--
Confidence            45788  88877655 466888899988765 56667788899999999998876532 22     377778776543  


Q ss_pred             EEEec-------CCCCeEEEEEecCCCeEEEEEeC-----CCcEEEEECCCCeE
Q 005473          634 RTFTG-------HSTTVMSLDFHPSKEDLLCSCDN-----NSEIRYWSINNGSC  675 (695)
Q Consensus       634 ~~~~g-------h~~~V~sl~fspdg~~llaSgs~-----Dg~IriWDl~tg~~  675 (695)
                      ..+..       ....+..+.|+|+|+.++++...     ...+..++...+..
T Consensus        81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~  134 (281)
T d1k32a2          81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINF  134 (281)
T ss_dssp             EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEE
T ss_pred             EEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCcee
Confidence            22221       22345778999999976655332     22355556554443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.39  Score=46.25  Aligned_cols=139  Identities=14%  Similarity=0.063  Sum_probs=93.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCC
Q 005473          553 ASTSKVESCHFSPDGKLLATGGH--DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENP  629 (695)
Q Consensus       553 ~H~~~V~~v~fspdg~~LaSgs~--Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTg-s~DgtIrvWDl~t~  629 (695)
                      ........+++.|...+|+....  .+.|.-.+++.......+...-.....+++.+.+..|..+ ...++|...|++..
T Consensus       117 ~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~  196 (266)
T d1ijqa1         117 ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  196 (266)
T ss_dssp             CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCC
Confidence            34455788999987666665543  3456666776555544444444667899999877766555 55788999999764


Q ss_pred             CeeEEEEecC--CCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEEeCC
Q 005473          630 DYSLRTFTGH--STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRVVQP  694 (695)
Q Consensus       630 ~~~l~~~~gh--~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf~sP  694 (695)
                      .. .......  .....+|++.  +..++.+-..++.|+..+..+++.+..+......+..|..+||
T Consensus       197 ~~-~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~~~~~~p~~i~v~~~  260 (266)
T d1ijqa1         197 NR-KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHN  260 (266)
T ss_dssp             SC-EEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESG
T ss_pred             CE-EEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcceEEEEcCCCCceEEEEECC
Confidence            43 2333222  2346677777  3467778778899999999888887777766555566665476

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.52  E-value=0.11  Score=50.93  Aligned_cols=103  Identities=14%  Similarity=0.064  Sum_probs=74.0

Q ss_pred             CeEEEEEcCCCCEEEEE-eCCCcEEEEECCCC------e--EEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 005473          557 KVESCHFSPDGKLLATG-GHDKKAVLWCTESF------T--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSg-s~Dg~V~IWDl~t~------~--~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~  627 (695)
                      .-+.++|+++++.++.+ +..+.|..|+++..      +  ....+.+..+....+++..+|++.++.-..+.|.+||.+
T Consensus       149 ~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~  228 (295)
T d2ghsa1         149 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD  228 (295)
T ss_dssp             SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred             CcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC
Confidence            35789999999866554 45788988887421      1  112233445667889999999888877778899999975


Q ss_pred             CCCeeEEEEecCCCCeEEEEEe-cCCCeEEEEEeC
Q 005473          628 NPDYSLRTFTGHSTTVMSLDFH-PSKEDLLCSCDN  661 (695)
Q Consensus       628 t~~~~l~~~~gh~~~V~sl~fs-pdg~~llaSgs~  661 (695)
                       ++. +..+.-....+++++|- ++.+.|+++...
T Consensus       229 -G~~-~~~i~lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         229 -GNH-IARYEVPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             -CCE-EEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             -CcE-eeEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence             454 66666555679999996 777888887654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.00  E-value=0.015  Score=55.31  Aligned_cols=71  Identities=13%  Similarity=0.203  Sum_probs=53.2

Q ss_pred             EEcCC--CCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCC-----cEEEEECCCCeEE
Q 005473          604 RFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCA  676 (695)
Q Consensus       604 ~~spd--g~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg-----~IriWDl~tg~~v  676 (695)
                      ..+|+  |..++..+ ++.|++.|+..+..  +.+..+.+.+...+|+|||+.|++++..++     .|.+++..+++..
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~--~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~   81 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGST--RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK   81 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCE--EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCE--EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence            35788  88887765 45789999997663  556667788999999999998887765443     4778888777655


Q ss_pred             E
Q 005473          677 G  677 (695)
Q Consensus       677 ~  677 (695)
                      .
T Consensus        82 ~   82 (281)
T d1k32a2          82 R   82 (281)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.74  E-value=0.34  Score=46.74  Aligned_cols=135  Identities=7%  Similarity=-0.043  Sum_probs=87.5

Q ss_pred             CCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCCCeeE
Q 005473          556 SKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSL  633 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs-~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~La-Tgs~DgtIrvWDl~t~~~~l  633 (695)
                      ..|.+++|....+.|+-+. .++.|+..+++.......+......+.++++..-++.|+ +-...+.|.+.+++.... .
T Consensus        36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~-~  114 (263)
T d1npea_          36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-R  114 (263)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-E
T ss_pred             CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE-E
Confidence            3478899998777776664 467898889887666555554446788999987666665 445677999999986443 3


Q ss_pred             EEEecCCCCeEEEEEecCCCeEEEEEeCCC--cEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       634 ~~~~gh~~~V~sl~fspdg~~llaSgs~Dg--~IriWDl~tg~~v~~~~~h~~~VtsVaf  691 (695)
                      ..+......+..++++|....++.+-...+  .|..-+++...........-...+.|++
T Consensus       115 ~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glai  174 (263)
T d1npea_         115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTF  174 (263)
T ss_dssp             EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEE
T ss_pred             EEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEE
Confidence            333333467899999998887776644333  3544466543333323223334466766

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.97  E-value=0.43  Score=49.49  Aligned_cols=113  Identities=10%  Similarity=0.061  Sum_probs=74.8

Q ss_pred             CeEEEEEcC--CCCEEEEEeCCC------------------cEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEe
Q 005473          557 KVESCHFSP--DGKLLATGGHDK------------------KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS  616 (695)
Q Consensus       557 ~V~~v~fsp--dg~~LaSgs~Dg------------------~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs  616 (695)
                      .+..+...+  .-.|++.++.+.                  .+.++|..+.+....+.. .+....+.++++|+++++.|
T Consensus       133 ~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~Ts  211 (459)
T d1fwxa2         133 GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTS  211 (459)
T ss_dssp             SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEE
T ss_pred             CCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEe
Confidence            356666654  444777766533                  366789999888777653 34567899999999998877


Q ss_pred             CC--------------------------------------CeEEEEECCCC--CeeEEEEecCCCCeEEEEEecCCCeEE
Q 005473          617 AD--------------------------------------RTVRVWDTENP--DYSLRTFTGHSTTVMSLDFHPSKEDLL  656 (695)
Q Consensus       617 ~D--------------------------------------gtIrvWDl~t~--~~~l~~~~gh~~~V~sl~fspdg~~ll  656 (695)
                      .+                                      +.+.+-|.+..  ...++.+... .....+.++|||++++
T Consensus       212 yNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~  290 (459)
T d1fwxa2         212 YNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLC  290 (459)
T ss_dssp             SCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEE
T ss_pred             ccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecC-CCCCceEECCCCCEEE
Confidence            43                                      12334443321  1112222211 2345689999999999


Q ss_pred             EEEeCCCcEEEEECC
Q 005473          657 CSCDNNSEIRYWSIN  671 (695)
Q Consensus       657 aSgs~Dg~IriWDl~  671 (695)
                      +++.-+.+|.|+|++
T Consensus       291 VaGKLs~tVSViD~~  305 (459)
T d1fwxa2         291 VAGKLSPTVTVLDVT  305 (459)
T ss_dssp             EECTTSSBEEEEEGG
T ss_pred             EeCCcCCcEEEEEeh
Confidence            999999999999996

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.83  E-value=1.8  Score=41.29  Aligned_cols=134  Identities=7%  Similarity=-0.026  Sum_probs=87.4

Q ss_pred             CCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCC-Ce--EEEEECCCCCe
Q 005473          556 SKVESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RT--VRVWDTENPDY  631 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSg-s~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~D-gt--IrvWDl~t~~~  631 (695)
                      ..+.++++..-++.|+.+ ...+.|.+.+++...+...+......+..++++|...+|+....+ +.  |..-+++....
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~  158 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR  158 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred             ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc
Confidence            458899998766666655 456799999998766544444444678899999987776654332 23  44445654332


Q ss_pred             eEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEEEEEE
Q 005473          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFVSVRV  691 (695)
Q Consensus       632 ~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~VtsVaf  691 (695)
                       .......-.....|++++.+..++++-...+.|...|+....+...+.+...+ .+|++
T Consensus       159 -~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P-~~lav  216 (263)
T d1npea_         159 -RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYP-FAVTS  216 (263)
T ss_dssp             -EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSE-EEEEE
T ss_pred             -eeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCc-EEEEE
Confidence             22233233567899999888877777777889999999765544444443333 45654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.72  E-value=0.065  Score=53.67  Aligned_cols=117  Identities=9%  Similarity=0.086  Sum_probs=73.8

Q ss_pred             eEEEEEcCCCCEEEEEeCCC-----------cEEEEECCCCeEEE--E-ecccCCCeEEEEEcCCCCEEEEEeCC-CeEE
Q 005473          558 VESCHFSPDGKLLATGGHDK-----------KAVLWCTESFTVKS--T-LEEHTQWITDVRFSPSLSRLATSSAD-RTVR  622 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs~Dg-----------~V~IWDl~t~~~~~--~-l~~H~~~V~~v~~spdg~~LaTgs~D-gtIr  622 (695)
                      +.......+|++++.|+.+.           .+.+||..+.+-..  . ...|......+++.+++.+++.|+.+ ..+.
T Consensus        22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~  101 (387)
T d1k3ia3          22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  101 (387)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCccee
Confidence            44455566888888887531           37799998765332  2 23344445567888999999998765 5799


Q ss_pred             EEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCC------CcEEEEECCCCeE
Q 005473          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSC  675 (695)
Q Consensus       623 vWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~D------g~IriWDl~tg~~  675 (695)
                      +||..+..............-.+++..+||. +++.|+.+      ..+.+||..+.+.
T Consensus       102 ~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~-v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3         102 LYDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             EEEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             EecCccCcccccccccccccccceeeecCCc-eeeeccccccccccceeeeecCCCCce
Confidence            9999875531111111112234566778887 45455532      3689999987654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.37  E-value=3.4  Score=39.14  Aligned_cols=123  Identities=8%  Similarity=-0.043  Sum_probs=85.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEe--CCCeEEEEECCCCCe
Q 005473          555 TSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS--ADRTVRVWDTENPDY  631 (695)
Q Consensus       555 ~~~V~~v~fspdg~~LaSgs-~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs--~DgtIrvWDl~t~~~  631 (695)
                      ...+.++++.+.++.|+.+. ..+.|.+++++...+...+.........++++|...+|+...  ..+.|.-.+++....
T Consensus        76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~  155 (266)
T d1ijqa1          76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI  155 (266)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred             CCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce
Confidence            34467888887666666554 567899999987776666666667789999999766665543  344677777765432


Q ss_pred             eEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEE
Q 005473          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV  678 (695)
Q Consensus       632 ~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~  678 (695)
                       .......-.....+++++.+..|+.+-...+.|...|+....+...
T Consensus       156 -~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~  201 (266)
T d1ijqa1         156 -YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI  201 (266)
T ss_dssp             -EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             -ecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEE
Confidence             2333333456789999998887887777788999999975544333

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.21  E-value=0.99  Score=44.47  Aligned_cols=125  Identities=16%  Similarity=0.228  Sum_probs=88.0

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecC
Q 005473          560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH  639 (695)
Q Consensus       560 ~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh  639 (695)
                      +.-.+|..+.||.-+ ..++.|||+++.+.++.+.-. ..|.--.|-.+ +.|+..+ +..|+-|+++....+++.|..|
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~-~~L~lVT-~taVYHW~~~g~s~P~k~fdR~  142 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRH  142 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEESSS-SEEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcC-CCcEEEEecCC-CEEEEEc-CCceEEEcccCCCCchhhhhhc
Confidence            455678888777766 568999999999988877644 45666677554 4555543 5679999997666678888877


Q ss_pred             CC----CeEEEEEecCCCeEEEEEe------CCCcEEEEECCCCeEEEEEecCCCcEEEE
Q 005473          640 ST----TVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKNFFESFVSV  689 (695)
Q Consensus       640 ~~----~V~sl~fspdg~~llaSgs------~Dg~IriWDl~tg~~v~~~~~h~~~VtsV  689 (695)
                      ..    .|..-..++++++++++|=      -.|.+.+|.+.. +.-..+.||......+
T Consensus       143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~F~~~  201 (327)
T d1utca2         143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQF  201 (327)
T ss_dssp             GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEE
T ss_pred             ccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCccccceeeeeEEE
Confidence            53    4666777888998877662      347889999874 4555666665444433

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=93.19  E-value=0.4  Score=51.57  Aligned_cols=58  Identities=5%  Similarity=0.030  Sum_probs=36.2

Q ss_pred             eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473          620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  680 (695)
Q Consensus       620 tIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~  680 (695)
                      .|.-||+.+++. +-.+... ....+-.+...+. ++++|+.||.++.||.++|+.+-++.
T Consensus       458 ~l~AiD~~tGk~-~W~~~~~-~p~~gg~lstagg-lVF~G~~dg~l~A~Da~TGe~LW~~~  515 (573)
T d1kb0a2         458 RLLAWDPVAQKA-AWSVEHV-SPWNGGTLTTAGN-VVFQGTADGRLVAYHAATGEKLWEAP  515 (573)
T ss_dssp             EEEEEETTTTEE-EEEEEES-SSCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cEEEeCCCCCce-EeeecCC-CCCCCceEEEcCC-EEEEECCCCeEEEEECCCCcEeEEEE
Confidence            455666666553 3332221 1111111233455 66689999999999999999998887

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.53  E-value=0.53  Score=48.38  Aligned_cols=110  Identities=10%  Similarity=0.043  Sum_probs=69.5

Q ss_pred             eEEEEEcCCCCEEEEEe-CC----CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCC--------------
Q 005473          558 VESCHFSPDGKLLATGG-HD----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--------------  618 (695)
Q Consensus       558 V~~v~fspdg~~LaSgs-~D----g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~D--------------  618 (695)
                      +..++++||+++|+.+- .+    ..|+|+|+.+++.+..... ......+.|.+++..|+....|              
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~  205 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence            45667899999877433 23    4699999999987643221 1122568899998877654432              


Q ss_pred             --CeEEEEECCCCCe-eEEEEecC--CCCeEEEEEecCCCeEEEEEe--CCCcEEEE
Q 005473          619 --RTVRVWDTENPDY-SLRTFTGH--STTVMSLDFHPSKEDLLCSCD--NNSEIRYW  668 (695)
Q Consensus       619 --gtIrvWDl~t~~~-~l~~~~gh--~~~V~sl~fspdg~~llaSgs--~Dg~IriW  668 (695)
                        ..|++|.+.+... .+..+...  ...+..+..+.++++++++..  .++...+|
T Consensus       206 ~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~  262 (430)
T d1qfma1         206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLW  262 (430)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEE
T ss_pred             CcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEE
Confidence              2588888876532 12334433  345677888999998776544  23444444

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.02  E-value=0.03  Score=43.96  Aligned_cols=32  Identities=22%  Similarity=0.321  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHhcChHHHHHHHHhhcCCCC
Q 005473            9 DKMLDVYIYDYLLKRKLHASAKAFQTEGKVST   40 (695)
Q Consensus         9 ~~~L~~yIydyl~k~~~~~tA~af~~e~~~~~   40 (695)
                      ++-||--|++||..+|+.++|.+|.+|++++.
T Consensus         7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~   38 (76)
T d1uuja_           7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDM   38 (76)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCC
Confidence            34689999999999999999999999998764

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.93  E-value=2.5  Score=43.66  Aligned_cols=53  Identities=21%  Similarity=0.264  Sum_probs=38.5

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEe--c------ccCCCeEEEEEcCC
Q 005473          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--E------EHTQWITDVRFSPS  608 (695)
Q Consensus       556 ~~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l--~------~H~~~V~~v~~spd  608 (695)
                      ..-++|+|.|||++|++--.+|+|++++..++......  .      .-.+....|+|+|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            45689999999998877655799999988776543322  1      11256789999995

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=91.92  E-value=4.9  Score=40.09  Aligned_cols=122  Identities=13%  Similarity=0.139  Sum_probs=81.7

Q ss_pred             eEEEEE--cCC-CC-EEEEEeCCCcEEEEECC---CC----eEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 005473          558 VESCHF--SPD-GK-LLATGGHDKKAVLWCTE---SF----TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (695)
Q Consensus       558 V~~v~f--spd-g~-~LaSgs~Dg~V~IWDl~---t~----~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl  626 (695)
                      |+.+|+  ++. |. ++++...+|.+..|.+.   .+    +.++.+. -...+..|.+......|+.+-.+..|+.+++
T Consensus       130 vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~LyisEE~~Giw~~~a  208 (353)
T d1h6la_         130 VYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGSLYIAEEDEAIWKFSA  208 (353)
T ss_dssp             CCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTEEEEEETTTEEEEEES
T ss_pred             ceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCcEEEecCccceEEEEe
Confidence            555555  654 54 56677778999888662   22    3444554 3567889999999899999988887877776


Q ss_pred             CCCC----eeEEEEec--CCCCeEEEEEec--CCC-eEEEEEeCCCcEEEEECCC-CeEEEEEe
Q 005473          627 ENPD----YSLRTFTG--HSTTVMSLDFHP--SKE-DLLCSCDNNSEIRYWSINN-GSCAGVFK  680 (695)
Q Consensus       627 ~t~~----~~l~~~~g--h~~~V~sl~fsp--dg~-~llaSgs~Dg~IriWDl~t-g~~v~~~~  680 (695)
                      +...    ..+....+  ....+..|++-.  ++. +||+|.-.+.+..|||... .+.+..|.
T Consensus       209 ~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~  272 (353)
T d1h6la_         209 EPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQ  272 (353)
T ss_dssp             STTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             ccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence            5221    11222222  356778887653  333 7787877899999999876 47777765

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=91.73  E-value=0.56  Score=50.28  Aligned_cols=59  Identities=12%  Similarity=0.172  Sum_probs=39.4

Q ss_pred             CeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  680 (695)
Q Consensus       619 gtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~  680 (695)
                      |.|.-||+.+++. +..+. +...+.+-.+.-.+. |++.|+.||.++.+|.++|+.+-.+.
T Consensus       438 G~l~A~D~~tGk~-~W~~~-~~~~~~gg~l~Tagg-lVF~G~~dg~l~A~Da~tGe~LW~~~  496 (560)
T d1kv9a2         438 GALLAWDPVKQKA-AWKVP-YPTHWNGGTLSTAGN-LVFQGTAAGQMHAYSADKGEALWQFE  496 (560)
T ss_dssp             EEEEEEETTTTEE-EEEEE-ESSSCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cceEEEeCCCCeE-eeecc-CCCCCCCceeEECCC-EEEEECCCCcEEEEECCCCcEeEEEE
Confidence            4677888888764 33322 112222222333445 66689999999999999999998887

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=91.44  E-value=1.6  Score=42.72  Aligned_cols=120  Identities=11%  Similarity=0.098  Sum_probs=71.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCC-CcEEEEECCCCeEEEEeccc-CCCeEEEEEcCCCCEEEEEeCC------CeEEEEE
Q 005473          554 STSKVESCHFSPDGKLLATGGHD-KKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSAD------RTVRVWD  625 (695)
Q Consensus       554 H~~~V~~v~fspdg~~LaSgs~D-g~V~IWDl~t~~~~~~l~~H-~~~V~~v~~spdg~~LaTgs~D------gtIrvWD  625 (695)
                      |......+++.++|++++.|+.+ ..+.+||..+......-... ...-.+++..+|+++++.|+.+      ..+.+||
T Consensus        74 ~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd  153 (387)
T d1k3ia3          74 HDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYS  153 (387)
T ss_dssp             CCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEE
T ss_pred             cccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeec
Confidence            43344567888999999988765 68999999876654321111 1223456677899999888742      3589999


Q ss_pred             CCCCCeeEEE--------EecCC-----CCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCe
Q 005473          626 TENPDYSLRT--------FTGHS-----TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS  674 (695)
Q Consensus       626 l~t~~~~l~~--------~~gh~-----~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~  674 (695)
                      ..+.......        ...+.     ..-..+...++|. +++.++.++.+.++|..+..
T Consensus       154 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~g~~~~~~~~~~~~~~~  214 (387)
T d1k3ia3         154 PSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGS-VFQAGPSTAMNWYYTSGSGD  214 (387)
T ss_dssp             TTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGC-EEECCSSSEEEEEECSTTCE
T ss_pred             CCCCceeecCCCcccccccccccceeeccceeEEEEeCCCC-EEEecCcCCcEEecCcccCc
Confidence            9875431100        00000     0011122334555 55567677777777776654

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.32  E-value=1.5  Score=46.85  Aligned_cols=59  Identities=12%  Similarity=0.025  Sum_probs=36.9

Q ss_pred             CeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  680 (695)
Q Consensus       619 gtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~  680 (695)
                      |.|.-+|+.+++. +..... .....+-.+...+. +++.|+.||.++.+|.++|+.+-.+.
T Consensus       444 G~l~AiD~~TG~~-~W~~~~-~~~~~~g~l~Tagg-lVf~G~~dg~l~A~Da~tGe~lW~~~  502 (571)
T d2ad6a1         444 GQIRAFDLTTGKA-KWTKWE-KFAAWGGTLYTKGG-LVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             EEEEEECTTTCCE-EEEEEE-SSCCCSBCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccEEEeccCCCce-eeEcCC-CCCCCcceeEecCC-EEEEECCCCeEEEEECCCCcEEEEEE
Confidence            3566777777664 322221 11111111222344 66689999999999999999998887

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=90.77  E-value=4.5  Score=41.51  Aligned_cols=99  Identities=11%  Similarity=0.128  Sum_probs=69.5

Q ss_pred             EEEEcC---CCCEEEEEe-CCCcEEEEECCCCeEEEEecc-cCCCeEEEEEcC--CCCEEEEEeCCC-------------
Q 005473          560 SCHFSP---DGKLLATGG-HDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSP--SLSRLATSSADR-------------  619 (695)
Q Consensus       560 ~v~fsp---dg~~LaSgs-~Dg~V~IWDl~t~~~~~~l~~-H~~~V~~v~~sp--dg~~LaTgs~Dg-------------  619 (695)
                      .+.+..   ||++|+... .+..|.+-|+++.++...++- ....+..++..+  ...+++.++.+.             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            555644   899888877 578999999999998775533 345667777654  456777776532             


Q ss_pred             -----eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEe
Q 005473          620 -----TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (695)
Q Consensus       620 -----tIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs  660 (695)
                           .+.++|..+.+.......+  +....++++++|+++++++.
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V~--g~ld~~~~s~dGK~af~Tsy  212 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLVS--GNLDNCDADYEGKWAFSTSY  212 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEES--SCCCCEEECSSSSEEEEEES
T ss_pred             hhcceEEEEEecCCceEEEEeeeC--CChhccccCCCCCEEEEEec
Confidence                 3678899886653333332  35678999999998887774

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=90.58  E-value=2.1  Score=45.48  Aligned_cols=80  Identities=9%  Similarity=0.119  Sum_probs=51.8

Q ss_pred             CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCC-CeEEEEEecCCCeE
Q 005473          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST-TVMSLDFHPSKEDL  655 (695)
Q Consensus       577 g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~-~V~sl~fspdg~~l  655 (695)
                      |.|.-||+.+++.+..+.. ...+..-.+.-.+.++++|+.||.++.+|.++++. +..+.-..+ ...-+.|.-+|+.+
T Consensus       438 G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~-LW~~~l~~~~~~~P~ty~~dGkqy  515 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA-LWQFEAQSGIVAAPMTFELAGRQY  515 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cceEEEeCCCCeEeeeccC-CCCCCCceeEECCCEEEEECCCCcEEEEECCCCcE-eEEEECCCCccccCEEEEECCEEE
Confidence            4677889999998877642 22222212233467889999999999999999886 655553221 11235566678755


Q ss_pred             EEE
Q 005473          656 LCS  658 (695)
Q Consensus       656 laS  658 (695)
                      |+.
T Consensus       516 v~v  518 (560)
T d1kv9a2         516 VAI  518 (560)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=90.08  E-value=1.7  Score=46.31  Aligned_cols=79  Identities=6%  Similarity=0.060  Sum_probs=50.1

Q ss_pred             CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCCC-eEEEEEecCCCeE
Q 005473          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT-VMSLDFHPSKEDL  655 (695)
Q Consensus       577 g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~~-V~sl~fspdg~~l  655 (695)
                      |.|.-||+.+++.+..++... +...=...-.+.+|++|+.|+.++.||.++++. +..+.-..+. -.-+.|.-+|+.+
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~-LW~~~~~~~~~~~P~ty~~~GkQY  534 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK-LWEAPTGTGVVAAPSTYMVDGRQY  534 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcE-eEEEECCCCccccCEEEEECCEEE
Confidence            357778888888887765332 111111223578999999999999999999986 6665532211 1224556677754


Q ss_pred             EE
Q 005473          656 LC  657 (695)
Q Consensus       656 la  657 (695)
                      |+
T Consensus       535 v~  536 (573)
T d1kb0a2         535 VS  536 (573)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.97  E-value=0.86  Score=48.92  Aligned_cols=59  Identities=10%  Similarity=0.144  Sum_probs=40.1

Q ss_pred             CeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  680 (695)
Q Consensus       619 gtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~  680 (695)
                      |.|.-+|+.+++. +.....+ ..+.+-.+...+. ++++|+.||.++.||.++|+.+-.++
T Consensus       466 G~l~AiD~~TG~i-~W~~~~~-~p~~~g~lstagg-lVF~Gt~dg~l~A~Da~TGe~LW~~~  524 (582)
T d1flga_         466 GSLRAMDPVSGKV-VWEHKEH-LPLWAGVLATAGN-LVFTGTGDGYFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             EEEEEECTTTCCE-EEEEEES-SCCCSCCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEcCCCCcE-EeecCCC-CCCccceeEEcCC-eEEEeCCCCeEEEEECCCCcEeEEEE
Confidence            5677788887764 4333322 2222222334555 66689999999999999999998888

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=89.56  E-value=1.2  Score=48.08  Aligned_cols=59  Identities=12%  Similarity=0.134  Sum_probs=38.8

Q ss_pred             CeEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEe
Q 005473          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  680 (695)
Q Consensus       619 gtIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~  680 (695)
                      |.|.-||+.+++. +-... +...+.+-.+...+. +++.|+.||.++.+|.++|+.+-.+.
T Consensus       453 G~l~A~D~~TG~~-~W~~~-~~~~~~gg~lsTagg-lVF~G~~Dg~l~A~Da~TGe~LW~~~  511 (596)
T d1w6sa_         453 GQIKAYNAITGDY-KWEKM-ERFAVWGGTMATAGD-LVFYGTLDGYLKARDSDTGDLLWKFK  511 (596)
T ss_dssp             EEEEEECTTTCCE-EEEEE-ESSCCCSBCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ceEEEEeCCCCce-ecccC-CCCCCccceeEecCC-EEEEECCCCeEEEEECCCCcEeeEEE
Confidence            4677778887764 32221 112222222233455 66689999999999999999998887

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.62  E-value=1  Score=48.35  Aligned_cols=79  Identities=15%  Similarity=0.056  Sum_probs=53.1

Q ss_pred             CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCCC-CeEEEEEecCCCeE
Q 005473          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST-TVMSLDFHPSKEDL  655 (695)
Q Consensus       577 g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~~-~V~sl~fspdg~~l  655 (695)
                      |.|.-+|+.+++.+.....+. ++..-.++..+.++++|+.||.++.||.+++++ +..+.-... .-.-+.|..+|+-+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~-LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE-LWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcE-eEEEECCCCccccCEEEEECCEEE
Confidence            567788999998888776432 222212234577888999999999999999986 666553222 12236677788755


Q ss_pred             EE
Q 005473          656 LC  657 (695)
Q Consensus       656 la  657 (695)
                      ++
T Consensus       544 v~  545 (582)
T d1flga_         544 LG  545 (582)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=87.31  E-value=12  Score=36.51  Aligned_cols=108  Identities=10%  Similarity=-0.005  Sum_probs=67.8

Q ss_pred             cCCCC-EEEEEe---CCCcEEEEECCCC--eE--EEEecc-cCCCeEEEEEcCCCCEEEEEe--C-------------CC
Q 005473          564 SPDGK-LLATGG---HDKKAVLWCTESF--TV--KSTLEE-HTQWITDVRFSPSLSRLATSS--A-------------DR  619 (695)
Q Consensus       564 spdg~-~LaSgs---~Dg~V~IWDl~t~--~~--~~~l~~-H~~~V~~v~~spdg~~LaTgs--~-------------Dg  619 (695)
                      ..+|+ +|++..   ...+|-||++...  +.  +.++.. ......+|.+..++.+++|-.  .             -+
T Consensus       107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~  186 (340)
T d1v04a_         107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA  186 (340)
T ss_dssp             CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCC
T ss_pred             cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCC
Confidence            45666 455543   3467888877432  22  223322 235578999988888888831  1             12


Q ss_pred             eEEEEECCCCCeeEEEEecCCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCC
Q 005473          620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG  673 (695)
Q Consensus       620 tIrvWDl~t~~~~l~~~~gh~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg  673 (695)
                      +..+|..+.+..  ......-.....|+++||++.++++-+..+.|++|++...
T Consensus       187 ~g~v~~~~~~~~--~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         187 WSFVTYYSPNDV--RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             CEEEEEECSSCE--EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             ceeEEEEcCCce--EEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence            344554444332  2222223467899999999999999999999999998743

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=86.93  E-value=1.1  Score=47.98  Aligned_cols=81  Identities=10%  Similarity=-0.049  Sum_probs=50.4

Q ss_pred             CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecC-CCCeEEEEEecCCCeE
Q 005473          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDL  655 (695)
Q Consensus       577 g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh-~~~V~sl~fspdg~~l  655 (695)
                      |.|.-+|+.+++.+.....- ....+=.+.-.+.++++|+.|+.++.+|.++++. +..+.-. .....-+.|..||+.+
T Consensus       444 G~l~AiD~~TG~~~W~~~~~-~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~-lW~~~l~~~~~a~P~ty~~dGkqY  521 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE-LWNFKMPSGGIGSPMTYSFKGKQY  521 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ccEEEeccCCCceeeEcCCC-CCCCcceeEecCCEEEEECCCCeEEEEECCCCcE-EEEEECCCCceecceEEEECCEEE
Confidence            35667788888877665421 1111111122467888999999999999999886 6555422 2223346667788766


Q ss_pred             EEEE
Q 005473          656 LCSC  659 (695)
Q Consensus       656 laSg  659 (695)
                      |+..
T Consensus       522 i~v~  525 (571)
T d2ad6a1         522 IGSM  525 (571)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=84.65  E-value=19  Score=35.13  Aligned_cols=115  Identities=14%  Similarity=0.140  Sum_probs=69.8

Q ss_pred             eeeeEEEecCC-CCCeEEEEEcCCCCEEEEEeC---------------CCcEEEEECCCCeEEEEecccCCCeEEEEEcC
Q 005473          544 TFTEFQLIPAS-TSKVESCHFSPDGKLLATGGH---------------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSP  607 (695)
Q Consensus       544 ~~~~v~~l~~H-~~~V~~v~fspdg~~LaSgs~---------------Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~sp  607 (695)
                      ....+.++... ....++|++..++.+++|-..               -++..||..+.++...... .-...+.|+++|
T Consensus       137 ~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~-~l~~pNGI~~s~  215 (340)
T d1v04a_         137 SLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE-GFDFANGINISP  215 (340)
T ss_dssp             EEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEE-EESSEEEEEECT
T ss_pred             eEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcC-CCCccceeEECC
Confidence            45555665543 345789999999998888321               1344555555555443333 345688999999


Q ss_pred             CCCEEEEE-eCCCeEEEEECCCCCee-EEEEecCCCCeEEEEEecCCCeEEEEE
Q 005473          608 SLSRLATS-SADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSC  659 (695)
Q Consensus       608 dg~~LaTg-s~DgtIrvWDl~t~~~~-l~~~~gh~~~V~sl~fspdg~~llaSg  659 (695)
                      ++++|+.+ +..+.|++|++...... ......-.+..-.+.+.+.+..+++++
T Consensus       216 d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         216 DGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             CCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            98877555 56788999999754421 112222334456677776444455444

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.53  E-value=23  Score=34.33  Aligned_cols=129  Identities=11%  Similarity=0.216  Sum_probs=81.0

Q ss_pred             CeEEEEEcCCCCEEEEEe---C----CCcEEEEECCCCeEEEEecccCCCeEEEEEcCCC---CEEEEE---eCCCeEEE
Q 005473          557 KVESCHFSPDGKLLATGG---H----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---SRLATS---SADRTVRV  623 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs---~----Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg---~~LaTg---s~DgtIrv  623 (695)
                      .|..-..+++.++++..|   .    .|.+-+|.++. +.-..++||.+....+.+.-+.   .+++.+   ...++++|
T Consensus       149 QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhI  227 (327)
T d1utca2         149 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI  227 (327)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEE
Confidence            466677788888765433   2    36778998875 4456788887655555443211   233333   23468999


Q ss_pred             EECCCCC---e-----eEEEEec---CCCCeEEEEEecCCCeEEEEEeCCCcEEEEECCCCeEEEEEecCCCcEE
Q 005473          624 WDTENPD---Y-----SLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKNFFESFV  687 (695)
Q Consensus       624 WDl~t~~---~-----~l~~~~g---h~~~V~sl~fspdg~~llaSgs~Dg~IriWDl~tg~~v~~~~~h~~~Vt  687 (695)
                      -++....   .     .+..+..   -.+.-.++..++.-. +++.-+.-|.|++||+.++.|+..-+-..+.|-
T Consensus       228 iEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kyg-iiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF  301 (327)
T d1utca2         228 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNRISGETIF  301 (327)
T ss_dssp             EECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             EEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCC-EEEEEecCcEEEEEEcccccEEEEeecCCCceE
Confidence            9986532   1     1111111   134456777887766 666778899999999999999987765555544

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=81.76  E-value=2.5  Score=45.29  Aligned_cols=79  Identities=10%  Similarity=0.029  Sum_probs=50.4

Q ss_pred             CcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEEecCC-CCeEEEEEecCCCeE
Q 005473          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDL  655 (695)
Q Consensus       577 g~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~~gh~-~~V~sl~fspdg~~l  655 (695)
                      |.|.-||+.+++.+..... ...+..=.++-.+.+++.|+.||.++.+|.++++. +..+.--. ....-+.|..+|+-+
T Consensus       453 G~l~A~D~~TG~~~W~~~~-~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~-LW~~~~~~~~~a~P~tY~~dGkQY  530 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDL-LWKFKIPSGAIGYPMTYTHKGTQY  530 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ceEEEEeCCCCceecccCC-CCCCccceeEecCCEEEEECCCCeEEEEECCCCcE-eeEEECCCCcccCCeEEEECCEEE
Confidence            4677888888888766532 22222212233577888999999999999999886 65554222 122335566688755


Q ss_pred             EE
Q 005473          656 LC  657 (695)
Q Consensus       656 la  657 (695)
                      |+
T Consensus       531 va  532 (596)
T d1w6sa_         531 VA  532 (596)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.67  E-value=12  Score=37.42  Aligned_cols=97  Identities=7%  Similarity=-0.003  Sum_probs=62.0

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEecccCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeEEEE
Q 005473          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (695)
Q Consensus       557 ~V~~v~fspdg~~LaSgs~Dg~V~IWDl~t~~~~~~l~~H~~~V~~v~~spdg~~LaTgs~DgtIrvWDl~t~~~~l~~~  636 (695)
                      .|..|+|+.|  .|+... ++.+..+++...........-...+..+.+.|.  .++....++.+.++++..++. ....
T Consensus        88 ~v~~vafs~d--~l~v~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~-~~~~  161 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVST-RNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKST-KQLA  161 (381)
T ss_dssp             TEEEEEEETT--EEEEEE-SSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCE-EEEE
T ss_pred             CeEEEEeeCC--EEEEEe-CCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCcc-cccc
Confidence            4888999754  455544 556888887765444444444567888888875  566667789999999988653 1111


Q ss_pred             -----ecCCCCeEEEEEecCCCeEEEEEe
Q 005473          637 -----TGHSTTVMSLDFHPSKEDLLCSCD  660 (695)
Q Consensus       637 -----~gh~~~V~sl~fspdg~~llaSgs  660 (695)
                           ..-.+.+.+++|++.|..++ ++.
T Consensus       162 ~~v~~~~~~~~~~~v~ws~kgkq~v-~~~  189 (381)
T d1xipa_         162 QNVTSFDVTNSQLAVLLKDRSFQSF-AWR  189 (381)
T ss_dssp             ESEEEEEECSSEEEEEETTSCEEEE-EEE
T ss_pred             CCcceEEecCCceEEEEeCCcEEEE-EeC
Confidence                 11235577788877666443 443