Citrus Sinensis ID: 005489

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690----
MQFSVEDQRDAAENEEENVELSTRRNSENGDIEDMSLEAIFSEDESDEDEGDVDVDDSGSDGYLSEDSNCLPIAESEIHLGENGAAGKPSAQNQEILLELENKKKKLSRLKAKDPGFSKFLESHDKGLKSFRNENAYSDEDERSDDGMQSMDEDGPHLYLNKLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLDCETFCKILMFVLREADDVFREMLGISSNCKRDTILGLKNNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLEYKVSKEVGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTPFTQYYRSVMEKAASRSLIMNENKSFLEQKKQKRKRGQNIVDVRANGEKVPEKSKVDQAVSVKDGK
ccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHcccccccccccccccccccccccccccccccccHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHccccc
ccccccccccHHHHHHHHHHHHHcccccHcccccccHHHHHcccccccccccccccccccccccccccccccccccHcccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHccHHHHcccccccccccccccccccccccHHcccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccccEEEccHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHcHHHHHHHHHHHHHHHHHcccccHccHHHHHHHHHHHHHHHcccEccHHHHHHHHHHHHHccccccccccccEEEEEEccHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHcccEEEEcccc
MQFSVEDQRDAAENEEENVElstrrnsengdiedmsleaifsedesdedegdvdvddsgsdgylsedsnclpiaeseihlgengaagkpsaqNQEILLELENKKKKLSrlkakdpgfskFLESHDKGLksfrnenaysdedersddgmqsmdedgphlYLNKLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHygaestgilgsgsgapmldcETFCKILMFVLREADDVFREMLgissnckrdtilglknnskwktVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQdvasgfssdcFDLCLIKMYKAFIghckfaepaLFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHcihdydlqpLLYIIIQIINgmatlfpgprylplrcKCIEWLnhlssssgifipVTSLMLDVLEYKvskevgkpgkdfnfssavklpkhwlksrnfrEDCVFSAIELLSAHFAQWSyhisfpelatiplihlrkfqeksdVESLRRVVKRFIDVVEQNIEFVKKkrdevafspndqQSVEAFLQLEkcsgntpftqYYRSVMEKAASRSLIMNENKSFLEQKKQkrkrgqnivdvrangekvpekskvdqavsvkdgk
mqfsvedqrdaaeneeenvelstrrnsengdiedMSLEAIFSedesdedegdvdVDDSGSDGYLSEDSNCLPIAESEIHLGENGAAGKPSAQNQEILLELENKKKKlsrlkakdpgfskfleshdkglksfrnenaysdedeRSDDGMQSMDEDGPHLYLNKLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLDCETFCKILMFVLREADDVFREMLgissnckrdtilglknnskwktvrPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRssnkakvsinNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLEYKVSKEvgkpgkdfnfssavklpkhwlksRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRkfqeksdvesLRRVVKRFIDVVEQNIEFVkkkrdevafspNDQQSVEAFLQLEKCSGNTPFTQYYRSVMEKAASRSLIMNENKSfleqkkqkrkrgqnivdvrangekvpekskvdqavsvkdgk
MQFSVEDQRDAAENEEENVELSTRRNSENGDIEDMSLEAIFsedesdedegdvdvddsgsdgYLSEDSNCLPIAESEIHLGENGAAGKPSAQNQeillelenkkkklsrlkakDPGFSKFLESHDKGLKSFRNENAYSDEDERSDDGMQSMDEDGPHLYLNKLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLDCETFCKILMFVLREADDVFREMLGISSNCKRDTILGLKNNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHdydlqpllyiiiqiiNGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLEYKVSKEVGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTPFTQYYRSVMEKAASRSLIMNENKSFLEQKKQKRKRGQNIVDVRANGEKVPEKSKVDQAVSVKDGK
************************************************************************************************************************************************************HLYLNKLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLDCETFCKILMFVLREADDVFREMLGISSNCKRDTILGLKNNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLEYKVSKEVGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKR************VEAFLQLEKCSGNTPFTQYYRSV*********************************************************
********************************************************************************************************************FSKFLESH*******************************************AINSWCH*VK**HNASAFISLLNAYRAAC******************LDCETFCKILMFVLREADDVFREM***********************VRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLD**********************VKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVK**R*******NDQ*SVEAFLQLEKCSGNTPFTQYYRSV*********************************************************
*************************NSENGDIEDMSLEAIFS***************SGSDGYLSEDSNCLPIAESEIHLGENGAAGKPSAQNQEILLELENKKKKLSRLKAKDPGFSKFLESHDKGLKSFRNENAY***********QSMDEDGPHLYLNKLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLDCETFCKILMFVLREADDVFREMLGISSNCKRDTILGLKNNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLEYKVSKEVGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTPFTQYYRSVMEKAASRSLIMNENKSFL**********QNIVDVRANGE******************
***************************************************************************************************LENKKKKLSRLKAKDPGFSKFLESHDKGLKSFR****************************NKLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLDCETFCKILMFVLREADDVFREMLGISSNCKRDTILGLKNNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLEYKVSKEVGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTPFTQYYRSVMEKAASRSLIMNENKSFLEQ*K***********************************
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MQFSxxxxxxxxxxxxxxxxxxxxxNSENGDIEDMSLEAIFSEDESDEDEGDVDVDDSGSDGYLSEDSNCLPIAESEIHLGENGAAGKPSAQxxxxxxxxxxxxxxxxxxxxxDPGFSKFLESHDKGLKSFRNENAYSDEDERSDDGMQSMDEDGPHLYLNKLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLDCETFCKILMFVLREADDVFREMLGISSNCKRDTILGLKNNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLEYKVSKEVGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTPFTQYYRSVMEKAASRSLIMNENKSFLEQKKQKRKRGQNIVDVRANGEKVPEKSKVDQAVSVKDGK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query694 2.2.26 [Sep-21-2011]
Q9ZPV5764 Nucleolar complex protein no no 0.779 0.708 0.360 1e-108
Q8LNU5 757 Nucleolar complex protein no no 0.765 0.701 0.350 1e-92
Q3SYU1746 Nucleolar complex protein yes no 0.822 0.765 0.262 4e-56
Q9Y3T9749 Nucleolar complex protein yes no 0.772 0.715 0.271 3e-54
Q9WV70747 Nucleolar complex protein yes no 0.759 0.705 0.267 5e-54
P39744710 Nucleolar complex protein yes no 0.786 0.769 0.247 2e-42
Q9P7G0707 Uncharacterized NOC2 fami yes no 0.822 0.807 0.232 5e-42
Q9VIF0766 Nucleolar complex protein yes no 0.697 0.631 0.240 6e-41
O17580715 Nucleolar complex protein yes no 0.374 0.363 0.253 7e-19
A8WTM7719 Nucleolar complex protein N/A no 0.370 0.357 0.258 1e-18
>sp|Q9ZPV5|NOC2L_ARATH Nucleolar complex protein 2 homolog OS=Arabidopsis thaliana GN=At2g18220 PE=2 SV=2 Back     alignment and function desciption
 Score =  394 bits (1011), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/571 (36%), Positives = 327/571 (57%), Gaps = 30/571 (5%)

Query: 107 LSRLKAKDPGFSKFLESHDKGLKSFRNENAYSDEDERSDDGMQSMDEDG----------P 156
           L RL+ KDP F ++++ HD  L  F       D D   D  ++  +++G           
Sbjct: 63  LKRLQEKDPDFFQYMKEHDAELLKFDATEIEDDADVEPDTDLEDTEKEGDDEATKMEIAK 122

Query: 157 HLYLNKLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLD 216
            +++ K +T+S +++W   ++++       S+L AYR ACHYG ++       +   ++ 
Sbjct: 123 KVHVQKTITASMVDAWSKSIEDEAKLGGVRSILRAYRTACHYGDDTGD--DQSTKFSVMS 180

Query: 217 CETFCKILMFVLREADDVFREMLGISSNCK--RDTILGLKNNSKWKTVRPLIKSYLRSTL 274
            E F KI+++VL E D + R++L    + +  ++TIL L N   WK    L+KSYL ++L
Sbjct: 181 SEVFNKIMIYVLSEMDGILRKLLRFPEDTRGTKETILELTNTRPWKNYNHLVKSYLGNSL 240

Query: 275 FMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQ 334
            +LNQ TD+E++ F+L RL+ S VF AAFP L+R+ IK+A+H W TG   +   S L L+
Sbjct: 241 HVLNQMTDTEMITFTLRRLKHSSVFLAAFPSLLRKYIKVALHFWGTGSGALPVVSLLFLR 300

Query: 335 DVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAK 394
           D+     SDC D C   MYKA++ +C+F      KH+ FL N F+EL   D+  +   A 
Sbjct: 301 DLCIRLGSDCVDDCFKGMYKAYVLNCQFVNADKLKHISFLGNCFIELLGTDISAAYQHAF 360

Query: 395 VSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQI 454
           V I  L+ IL+  L TK KEA +K+  W++ +C++LW   +       +L+P+ Y + QI
Sbjct: 361 VFIRQLAMILREALNTKTKEAFRKVYQWKFIHCLELWTGAVCAYSSQSELRPVAYPLAQI 420

Query: 455 INGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLEYKVSKEVGKP---- 510
           I G+A L P  RY PLR +C+  LN L++++G FIPV+ L++D+LE    KE+ +P    
Sbjct: 421 ITGVARLVPTARYTPLRLRCVRMLNRLAAATGTFIPVSMLLVDMLEM---KELNRPPTGG 477

Query: 511 -GKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLR 569
            GK  +  + +K+ K  +K+R F+E CV++ +E L  H +QWS  ++F EL+ IP I LR
Sbjct: 478 VGKGVDLRTLLKVSKPAVKTRAFQEACVYTVVEELVEHLSQWSCSVAFFELSFIPTIRLR 537

Query: 570 KFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTP 629
            F + +  E  R+ +K+ I  +E N EFV KKR  + F PND  + E+FL+ EK +G TP
Sbjct: 538 SFCKSTKAERFRKEMKQLISQIEANSEFVNKKRALIKFLPND-LAAESFLEDEKKAGKTP 596

Query: 630 FTQYYRSVMEKAASRS-------LIMNENKS 653
             QY   + ++A  R+       +I+ EN +
Sbjct: 597 LLQYAEIIRQRAQQRNESLVESDVIVGENSA 627

Arabidopsis thaliana (taxid: 3702)
>sp|Q8LNU5|NOC2L_ORYSJ Nucleolar complex protein 2 homolog OS=Oryza sativa subsp. japonica GN=Os10g0495500 PE=2 SV=1 Back     alignment and function description
>sp|Q3SYU1|NOC2L_BOVIN Nucleolar complex protein 2 homolog OS=Bos taurus GN=NOC2L PE=2 SV=1 Back     alignment and function description
>sp|Q9Y3T9|NOC2L_HUMAN Nucleolar complex protein 2 homolog OS=Homo sapiens GN=NOC2L PE=1 SV=4 Back     alignment and function description
>sp|Q9WV70|NOC2L_MOUSE Nucleolar complex protein 2 homolog OS=Mus musculus GN=Noc2l PE=1 SV=2 Back     alignment and function description
>sp|P39744|NOC2_YEAST Nucleolar complex protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOC2 PE=1 SV=2 Back     alignment and function description
>sp|Q9P7G0|YKY4_SCHPO Uncharacterized NOC2 family protein C1142.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1142.04 PE=1 SV=1 Back     alignment and function description
>sp|Q9VIF0|NOC2L_DROME Nucleolar complex protein 2 homolog OS=Drosophila melanogaster GN=CG9246 PE=1 SV=1 Back     alignment and function description
>sp|O17580|NOC2L_CAEEL Nucleolar complex protein 2 homolog OS=Caenorhabditis elegans GN=pro-2 PE=2 SV=2 Back     alignment and function description
>sp|A8WTM7|NOC2L_CAEBR Nucleolar complex protein 2 homolog OS=Caenorhabditis briggsae GN=pro-2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query694
225449124704 PREDICTED: nucleolar complex protein 2 h 0.953 0.940 0.638 0.0
296086056710 unnamed protein product [Vitis vinifera] 0.923 0.902 0.656 0.0
224100835624 predicted protein [Populus trichocarpa] 0.726 0.807 0.695 0.0
449497671722 PREDICTED: nucleolar complex protein 2 h 0.961 0.923 0.550 0.0
255577677561 conserved hypothetical protein [Ricinus 0.765 0.946 0.658 0.0
356565737696 PREDICTED: nucleolar complex protein 2 h 0.914 0.912 0.570 0.0
449464502634 PREDICTED: nucleolar complex protein 2 h 0.806 0.883 0.569 0.0
297816846601 hypothetical protein ARALYDRAFT_485977 [ 0.733 0.846 0.541 1e-164
7076794606 putative protein [Arabidopsis thaliana] 0.731 0.838 0.539 1e-162
18410294594 Noc2p family protein [Arabidopsis thalia 0.720 0.841 0.545 1e-161
>gi|225449124|ref|XP_002274888.1| PREDICTED: nucleolar complex protein 2 homolog [Vitis vinifera] Back     alignment and taxonomy information
 Score =  829 bits (2142), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/681 (63%), Positives = 524/681 (76%), Gaps = 19/681 (2%)

Query: 4   SVEDQRDAAENE-EENVELSTRRNSENGDIEDMSLEAIFSEDESDEDEGDVDVDDSGSDG 62
           S   ++DAA+++ ++   L   RN E  DIE  SL++IFSED+SD     V  DDS SDG
Sbjct: 34  SSRGEQDAADDQLQDETNLLNGRNLEGEDIEGTSLDSIFSEDDSD-----VAGDDSDSDG 88

Query: 63  YLSEDSNCLPIAESEIH--LGENGAAGKPSAQNQEILLELENKKKKLSRLKAKDPGFSKF 120
           +LSEDS+C+ + ESE    L +NG       QN+EI LEL  KKKKL RLK KDP FSKF
Sbjct: 89  FLSEDSSCMYVPESENGNLLEDNGGGSALLVQNREIHLELAKKKKKLDRLKEKDPEFSKF 148

Query: 121 LESHDKGLKSFRNENAYSDEDERSDDGMQSMDEDGPHLYLNKLLTSSAINSWCHLVKEQH 180
           LES+ KGL+  RN+  YSDEDE SD  MQSM+ED  +L + KLLT+SAI+SWC +V +QH
Sbjct: 149 LESYHKGLEELRNDENYSDEDEESDLNMQSMNEDSLNLKIAKLLTNSAIDSWCKIVGDQH 208

Query: 181 NASAFISLLNAYRAACHYGAESTGIL-GSGSGAPMLDCETFCKILMFVLREADDVFREML 239
           + SA  SLLN YRAACHYG  ST  L  + S   + + ETFC ILMF+L EAD++FR +L
Sbjct: 209 SISALPSLLNGYRAACHYGTSSTSTLDAAASSYSIQNSETFCNILMFMLCEADNIFRGLL 268

Query: 240 GIS-SNCKRDTILGLKNNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIV 298
           GIS S+C+++TIL LKN +KWK+++P++KSYLRSTLF+LNQ TDSEILAFSL RLR SI+
Sbjct: 269 GISCSSCRKETILDLKNTAKWKSLKPMVKSYLRSTLFLLNQVTDSEILAFSLTRLRASII 328

Query: 299 FFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIG 358
           FF  FP L+RRLIKIAVHLWATG  TVS  +FLI+QDVA  FSSDCFD CLIK YKAFI 
Sbjct: 329 FFTTFPSLLRRLIKIAVHLWATGGGTVSSCTFLIIQDVALIFSSDCFDTCLIKTYKAFIA 388

Query: 359 HCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKK 418
           H KF +P  +KH+QFLRNSFVELCS D+ +SS KA VS+  L++ILQ GL+T+KKEA++K
Sbjct: 389 HSKFVKPGFYKHIQFLRNSFVELCSLDVEKSSKKALVSMQQLAKILQQGLRTRKKEAIEK 448

Query: 419 ICSWQYANCIDLWVTYISHCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWL 478
           ICSWQY NCIDLWV +IS  I D  LQ LL++IIQIING+A LFP PRYLPLR K I+WL
Sbjct: 449 ICSWQYTNCIDLWVMFISANISDNSLQHLLFMIIQIINGVAYLFPAPRYLPLRLKTIQWL 508

Query: 479 NHLSSSSGIFIPVTSLMLDVLEYKVSKEVGKPGKDFNFSSAVKLPKHWLKSRNFREDCVF 538
           NHLSSSSG+FIPV SL+LD LEYK+ KE G+PGK FN SSA+KLPKH LKSR F+E+C+ 
Sbjct: 509 NHLSSSSGVFIPVASLVLDTLEYKIGKESGQPGKAFNMSSAIKLPKHCLKSRKFQEECIL 568

Query: 539 SAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFV 598
           SAIELL+ HF QWSYHISFPELA+IPLI LRKF E + +E+LR VVKR ID VEQN+EFV
Sbjct: 569 SAIELLTVHFGQWSYHISFPELASIPLIRLRKFHEIT-IENLRHVVKRLIDQVEQNVEFV 627

Query: 599 KKKRDEVAFSPNDQQSVEAFLQLEK-CSGNTPFTQYYRSVMEKAASRSLIMNENKSFLEQ 657
           +KKRDEVAFSPNDQQSVE+FLQLEK   GN PFTQYY S+MEKAASRSL+MNE       
Sbjct: 628 QKKRDEVAFSPNDQQSVESFLQLEKGGGGNAPFTQYYNSIMEKAASRSLLMNEK---FPG 684

Query: 658 KKQKRKRGQNIVDVRANGEKV 678
            ++ RK G+    V   GE++
Sbjct: 685 SEKTRKMGK----VHDKGERL 701

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296086056|emb|CBI31497.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224100835|ref|XP_002312032.1| predicted protein [Populus trichocarpa] gi|222851852|gb|EEE89399.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449497671|ref|XP_004160470.1| PREDICTED: nucleolar complex protein 2 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|255577677|ref|XP_002529715.1| conserved hypothetical protein [Ricinus communis] gi|223530817|gb|EEF32681.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356565737|ref|XP_003551094.1| PREDICTED: nucleolar complex protein 2 homolog [Glycine max] Back     alignment and taxonomy information
>gi|449464502|ref|XP_004149968.1| PREDICTED: nucleolar complex protein 2 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|297816846|ref|XP_002876306.1| hypothetical protein ARALYDRAFT_485977 [Arabidopsis lyrata subsp. lyrata] gi|297322144|gb|EFH52565.1| hypothetical protein ARALYDRAFT_485977 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|7076794|emb|CAB75909.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18410294|ref|NP_567023.1| Noc2p family protein [Arabidopsis thaliana] gi|110741873|dbj|BAE98878.1| hypothetical protein [Arabidopsis thaliana] gi|332645873|gb|AEE79394.1| Noc2p family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query694
TAIR|locus:2100006594 RBL "REBELOTE" [Arabidopsis th 0.720 0.841 0.523 8.9e-143
UNIPROTKB|Q3SYU1746 NOC2L "Nucleolar complex prote 0.799 0.743 0.255 1.2e-49
DICTYBASE|DDB_G0284383802 DDB_G0284383 "Nucleolar comple 0.569 0.492 0.280 2e-49
UNIPROTKB|Q9Y3T9749 NOC2L "Nucleolar complex prote 0.785 0.727 0.258 1.6e-48
UNIPROTKB|F1NV71764 NOC2L "Uncharacterized protein 0.786 0.714 0.250 9.1e-48
UNIPROTKB|E9PTF3644 Noc2l "Protein Noc2l" [Rattus 0.750 0.809 0.253 3.8e-42
RGD|1309387644 Noc2l "nucleolar complex assoc 0.750 0.809 0.253 8e-42
ASPGD|ASPL0000053778774 AN0946 [Emericella nidulans (t 0.802 0.719 0.245 2.4e-41
MGI|MGI:1931051747 Noc2l "nucleolar complex assoc 0.671 0.623 0.252 7.4e-41
UNIPROTKB|G4MV71799 MGG_08867 "Nucleolar complex p 0.766 0.665 0.240 6.4e-37
TAIR|locus:2100006 RBL "REBELOTE" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1360 (483.8 bits), Expect = 8.9e-143, Sum P(2) = 8.9e-143
 Identities = 264/504 (52%), Positives = 358/504 (71%)

Query:   138 SDEDERSDDGMQSMDEDGPHLYLNKLLTSSAINSWCHLVKEQHNASAFISLLNAYRAACH 197
             SD D   D+ +   D D   +   K+L+ S + + C +V ++    A + LLN YRAAC 
Sbjct:    86 SDSDGYLDELVNETDSD---IMKCKVLSRSFLATCCDMVDKEQYVPALVRLLNWYRAACQ 142

Query:   198 YGAESTGILGSGSGAPMLDCETFCKILMFVLREADDVFREMLGISSNCKRDTILGLKNNS 257
             YG E +GI        + D ETF K+++FVL++AD  FR +LG+S +  ++ IL LKNN 
Sbjct:   143 YGHEPSGIARPNIYYDIEDSETFAKVIIFVLQKADHTFRSILGLSDSSTKEKILKLKNNP 202

Query:   258 KWKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHL 317
             KW +++PL+KS+ RSTL ++ QA D EI++F+L +LR SIVF AAFP L+++LIKI+VHL
Sbjct:   203 KWDSLKPLVKSFFRSTLHLVKQAGDLEIISFTLTQLRVSIVFLAAFPDLLKKLIKISVHL 262

Query:   318 WATGEETVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNS 377
             W TGEET+S  +FLIL+D++  F+S+CFD CLI MYKAF+  C   + A  +   FLR+S
Sbjct:   263 WVTGEETISQQAFLILKDISMVFNSECFDSCLINMYKAFLHDCDIPK-ANSEQRPFLRDS 321

Query:   378 FVELCSQDLLRSSNKAKVSINNLSRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISH 437
              VELCSQD+ +S  KA VSI  L+++L++ L TK KEAV+KI S +Y NC+DLWV +IS 
Sbjct:   322 LVELCSQDVQKSYTKASVSITQLAKLLKMALATKNKEAVEKIHSGEYINCVDLWVNFISA 381

Query:   438 CIHXXXXXXXXXXXXXXXNGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLD 497
              +                NG+A L  GPRYL LR KCI WLNHLS +SGIFIP+ SL+LD
Sbjct:   382 NVQDCDLQPLLYTIVQVINGVAQLIIGPRYLLLRVKCIHWLNHLSRTSGIFIPIASLVLD 441

Query:   498 VLEYKVSKEVGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISF 557
             +LEYK + +  K  +     S VKLPK+WLKS+NF+E C+FS IELL+ HFAQWS+HISF
Sbjct:   442 MLEYKTTNDGEKQEQKLEAVSTVKLPKNWLKSQNFQEQCIFSVIELLAVHFAQWSFHISF 501

Query:   558 PELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEA 617
             P+LATIP++ L+KF E+S +E L+RVVKRFI+ VE NIEFV++KRD+V FSPNDQQS + 
Sbjct:   502 PDLATIPVMRLKKFHERSTMEGLKRVVKRFIEQVESNIEFVQRKRDDVTFSPNDQQSADT 561

Query:   618 FLQLEKCSGNTPFTQYYRSVMEKA 641
             F+QLEK + N P+TQYY+S+++KA
Sbjct:   562 FMQLEKQNANAPYTQYYQSIIDKA 585
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0010582 "floral meristem determinacy" evidence=IGI
GO:0001510 "RNA methylation" evidence=RCA
GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA
UNIPROTKB|Q3SYU1 NOC2L "Nucleolar complex protein 2 homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0284383 DDB_G0284383 "Nucleolar complex protein 2 homolog" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y3T9 NOC2L "Nucleolar complex protein 2 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NV71 NOC2L "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E9PTF3 Noc2l "Protein Noc2l" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1309387 Noc2l "nucleolar complex associated 2 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ASPGD|ASPL0000053778 AN0946 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
MGI|MGI:1931051 Noc2l "nucleolar complex associated 2 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|G4MV71 MGG_08867 "Nucleolar complex protein 2" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query694
pfam03715301 pfam03715, Noc2, Noc2p family 1e-108
COG5604523 COG5604, COG5604, Uncharacterized conserved protei 6e-36
>gnl|CDD|217688 pfam03715, Noc2, Noc2p family Back     alignment and domain information 
 Score =  330 bits (849), Expect = e-108
 Identities = 110/300 (36%), Positives = 169/300 (56%), Gaps = 5/300 (1%)

Query: 341 SSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNL 400
            SD  +  L  MY AF+ + KF  P     + F++NS  EL   D   S   A V I  L
Sbjct: 1   PSDLLETVLKGMYLAFVKNSKFTNPHTLPLINFMKNSAAELFGLDEEVSYQHAFVYIRQL 60

Query: 401 SRILQLGLQTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYD--LQPLLYIIIQIINGM 458
           +  L+  L +K K+A K + +WQY + +D W   +S   +  +  L+PL+Y ++Q+I G+
Sbjct: 61  AIHLRNALNSKTKDAYKSVYNWQYIHSLDFWSRVLSAAANGSESPLRPLIYPLVQVILGV 120

Query: 459 ATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLEYKVSKEVGKPG--KDFNF 516
             L P  RY PLR   I  L  LS S+G+FIP+  L+L+VLE     +  K    K F+F
Sbjct: 121 IRLIPTARYFPLRLHLIRSLIRLSRSTGVFIPLAPLLLEVLESAEFNKPPKKSTLKPFDF 180

Query: 517 SSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPELATIPLIHLRKFQEKSD 576
           S  +KL K +L++R +++  +   +ELL+ + A WS  I+FPEL    +I L++F + S 
Sbjct: 181 SVTLKLSKAYLRTRVYQDGLIEQVVELLTEYLALWSKSIAFPELVLPVVIQLKRFLKSSK 240

Query: 577 VESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTPFTQYYRS 636
                + +K+ ++ +EQN +F++KKR  V F PND+  VEAFL+  K    TP  +YY+S
Sbjct: 241 NAKFNKQLKQLLEKLEQNSKFIEKKRSNVDFGPNDRAEVEAFLKDLKWEK-TPLGKYYQS 299

At least one member, Noc2p from yeast, is required for a late step in 60S subunit export from the nucleus. It has also been shown to co-precipitate with Nug1p, a nuclear GTPase also required for ribosome nucleus export. This family was formerly known as UPF0120. Length = 301
>gnl|CDD|227891 COG5604, COG5604, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 694
KOG2256661 consensus Predicted protein involved in nuclear ex 100.0
PF03715299 Noc2: Noc2p family; InterPro: IPR005343 This is a 100.0
COG5604523 Uncharacterized conserved protein [Function unknow 100.0
PF04147840 Nop14: Nop14-like family ; InterPro: IPR007276 Emg 99.15
KOG2147823 consensus Nucleolar protein involved in 40S riboso 97.8
PF04147840 Nop14: Nop14-like family ; InterPro: IPR007276 Emg 97.71
KOG2256661 consensus Predicted protein involved in nuclear ex 96.94
KOG18321516 consensus HIV-1 Vpr-binding protein [Cell cycle co 95.48
KOG2141822 consensus Protein involved in high osmolarity sign 93.6
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 93.15
PF04931784 DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070 90.17
KOG2147823 consensus Nucleolar protein involved in 40S riboso 89.1
KOG18321516 consensus HIV-1 Vpr-binding protein [Cell cycle co 87.82
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 87.76
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 80.86
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=6.5e-151  Score=1248.67  Aligned_cols=557  Identities=38%  Similarity=0.613  Sum_probs=512.4

Q ss_pred             HHHHHHHHHHHhhhcCChhHhHhhhhcCccccCCCCCCCCCcccccccc-ccC---CCCCCC----------CCcccCCc
Q 005489           98 LELENKKKKLSRLKAKDPGFSKFLESHDKGLKSFRNENAYSDEDERSDD-GMQ---SMDEDG----------PHLYLNKL  163 (694)
Q Consensus        98 ~e~~~hk~~L~~LkekDPEFyKyLqenD~~LL~F~~~~~~~dede~~dd-~~~---~~~~d~----------~~~~~~k~  163 (694)
                      +..+.||++|++|+++||+||+||++||++||+|++ |.++|++.|++| +.+   ++++|.          .+....+.
T Consensus        63 g~~~~hk~~l~~l~~~Dp~f~~~~~~~dk~ll~~~~-D~d~d~~lE~~d~Dled~~~d~~d~~~~~~~~~~~~~~~~~k~  141 (661)
T KOG2256|consen   63 GGASKHKKELEKLKDKDPEFFKFLKEEDKELLNFKE-DSDDDEDLEEPDEDLEDFSEDEEDDEEDEIDKETDKKKNSGKV  141 (661)
T ss_pred             chhhhHHHHhhhccccCcHHHHHHHhhhHHHhCCCC-CccchhhccCCcccccccccccchhhhhhcccchhhhhcccch
Confidence            345899999999999999999999999999999996 433333322211 110   111111          11124468


Q ss_pred             ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhccccCCCCCCCCCCccccCHHHHHHHHHHHHHHhHHHHHHHhCCcC
Q 005489          164 LTSSAINSWCHLVKEQHNASAFISLLNAYRAACHYGAESTGILGSGSGAPMLDCETFCKILMFVLREADDVFREMLGISS  243 (694)
Q Consensus       164 lT~~~v~~W~~~l~~~~s~~alr~ll~AFraA~~~~~e~~~~~~~~~ky~I~ds~VFn~vv~~~L~~lp~~l~~~l~~k~  243 (694)
                      ||..+|.+|++++...++++.+|++++||||||+++.+++   ..+.+|.|+|+++||+||.+||+++|.+|+++++++.
T Consensus       142 it~~~V~~w~~~l~~~~~~~~~r~vv~af~aAva~~~~~~---~e~~ky~i~ds~~Fn~vv~~~lq~~~~~l~~ll~~k~  218 (661)
T KOG2256|consen  142 ITVSNVYSWKQQLEQETSLTLVRRVVQAFRAAVAYGGEDS---AEAPKYVITDSEAFNAVVIFCLQEMPDILRKLLRGKV  218 (661)
T ss_pred             hhHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhccccc---ccccceeechHHHHHHHHHHHHHHhHHHHHHHcCCCc
Confidence            9999999999999999999999999999999999998762   2468999999999999999999999999999999988


Q ss_pred             CCCCccccccCCCCcchhhHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHhhcCCCc
Q 005489          244 NCKRDTILGLKNNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAFSLNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEE  323 (694)
Q Consensus       244 ~~~k~~~~~~~~~~kw~kl~~liKsyl~sll~LL~~ltd~~~l~~vL~~l~~l~py~~~f~kl~k~llK~lv~lWst~~e  323 (694)
                      .+++.....  ...+|.++++++|+|++++++||+++|++++++++|++++.++||+++||+++|.++|++|++||||++
T Consensus       219 ~~~~~~~~~--~~~~w~k~~~~vKsYl~s~l~Ll~~~t~te~~~~~L~~l~~l~~~~~~f~k~lk~liK~~V~vWstge~  296 (661)
T KOG2256|consen  219 DKDKSLFLK--TASKWYKLRVLVKSYLGSSLHLLNQLTDTEVLAFTLRHLTVLVPFLATFPKLLKKLIKAVVHVWSTGEE  296 (661)
T ss_pred             CCCcccccc--ccccchhhhHHHHHHhHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHheeeccCCc
Confidence            644433333  333499999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhhcccCCccchhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHH
Q 005489          324 TVSFHSFLILQDVASGFSSDCFDLCLIKMYKAFIGHCKFAEPALFKHLQFLRNSFVELCSQDLLRSSNKAKVSINNLSRI  403 (694)
Q Consensus       324 ~vrv~AFl~Lr~la~~~~~~~le~~LK~~Y~ayv~n~k~t~~~tlp~Infm~N~~~EL~~ld~~~sYq~AF~YIRQLAih  403 (694)
                      ++|++||+||+++|+.+.+++++.|||+||.+||+||++|+++|||+||||+||++||||+|+..+|||||+||||||||
T Consensus       297 ~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~nsk~~~~~tl~~i~Fl~~slvEL~~ld~~~~Yq~aF~yIrQLAih  376 (661)
T KOG2256|consen  297 SLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRNSKFVTVNTLPLINFLQNSLVELLGLDLQVSYQHAFVYIRQLAIH  376 (661)
T ss_pred             chhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhhhhhhcccchhHhHHHHHHHHHc-ccCCCCCcchhhHHHHHHHhhhhcccCCCcccchHHHHHHHHHHHH
Q 005489          404 LQLGLQTKKKEAVKKICSWQYANCIDLWVTYIS-HCIHDYDLQPLLYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLS  482 (694)
Q Consensus       404 LRna~~~k~Ke~~k~VYNWQfi~sL~lWs~Vls-~~~~~s~L~pLiYPLvQVi~G~irLiPt~ry~PLRfh~ir~L~~Ls  482 (694)
                      |||||++++|++++.||||||||||+||++||| ++...++|+||+|||||||+|||||+||+|||||||||||+||+||
T Consensus       377 LRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~~s~lq~LvYpLvQvi~GvirLipT~qy~PLRlhcir~Li~Ls  456 (661)
T KOG2256|consen  377 LRNAMITKNKESVQSVYNWQYVHCLDLWLRVISFANGSASQLQPLVYPLVQVILGVIRLIPTPQYYPLRLHCIRSLISLS  456 (661)
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccHhhhhhhhhHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999 7878899999999999999999999999999999999999999999


Q ss_pred             hccCcceechhHHHHhhccccc--cCCCCCCCCCCcccccccchhhhcchhhHHHHHHHHHHHHHHHHHHhhcCCccccc
Q 005489          483 SSSGIFIPVTSLMLDVLEYKVS--KEVGKPGKDFNFSSAVKLPKHWLKSRNFREDCVFSAIELLSAHFAQWSYHISFPEL  560 (694)
Q Consensus       483 ~~t~~fIPl~p~LleiL~~~~~--K~~~~~~k~~df~~~Lk~~k~~l~s~~yqd~lie~~~eLL~e~la~~S~sIAFPEL  560 (694)
                      ++||+||||+|+|+|||.+...  ++++++++|+||.++||||+.||++++||++|++++++||++||++||+|||||||
T Consensus       457 ~ssg~fIPi~~ll~Eml~~~~~nrkp~~~~~k~~D~~~~Lk~sk~~L~sk~yq~~~ieqv~~lL~ey~a~~s~~IaFPEL  536 (661)
T KOG2256|consen  457 RSSGTFIPLSPLLVEMLKSVTFNRKPKASSVKPIDFDSTLKLSKRYLRSKAYQDGVIEQVIELLLEYFALFSKSIAFPEL  536 (661)
T ss_pred             hhcCceeecHHHHHHHHHHhhccCCccccccCCCCeeEEeecCHHHhccHHHHHHHHHHHHHHHHHHHHHHhccCCchhh
Confidence            9999999999999999999765  34556679999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCCCHHHHHHHHHhhhcCCCCchHHHHHHHHHH
Q 005489          561 ATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQQSVEAFLQLEKCSGNTPFTQYYRSVMEK  640 (694)
Q Consensus       561 ~~P~i~~LKrf~K~~k~~~~~~~lK~LidkIeens~fI~~kR~~v~F~p~d~~~V~~Fl~~~~~~~~tPL~~y~~~~~~~  640 (694)
                      ++|+|++||+|+|.|++++|++.+++|+++|++|++||.++|..|+|+|+|.++|++|+++ ..|++||||+||.+|+++
T Consensus       537 v~p~i~rLk~f~k~skn~~~~r~v~~li~kle~ns~FV~~kR~~v~F~pnD~~~V~afe~~-~~~~~TPl~~yy~~~rk~  615 (661)
T KOG2256|consen  537 VLPVIMRLKSFLKESKNGNYKRVVKQLIEKLEENSKFVLEKRNKVKFSPNDQQAVSAFEQD-LDWNKTPLGQYYSSWRKV  615 (661)
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCcHHHHHHHHHH-HHccCCcHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999996 468999999999999999


Q ss_pred             HHHHHHHHhhhhhHHHHHHHH
Q 005489          641 AASRSLIMNENKSFLEQKKQK  661 (694)
Q Consensus       641 ~~~r~~~~~~~~~~~~~~~~~  661 (694)
                      +++++++++|+.++.++++++
T Consensus       616 ~~~k~r~~~e~~~~~d~~~~~  636 (661)
T KOG2256|consen  616 REEKNRLAVESSEEDDKDKPK  636 (661)
T ss_pred             HHHHHHHHhhhhhhhhhhhhh
Confidence            999999999999998777655

>PF03715 Noc2: Noc2p family; InterPro: IPR005343 This is a small family of mainly hypothetical proteins of unknown function Back     alignment and domain information
>COG5604 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [] Back     alignment and domain information
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [] Back     alignment and domain information
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar Back     alignment and domain information
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query694
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 75.3 bits (184), Expect = 4e-14
 Identities = 95/660 (14%), Positives = 205/660 (31%), Gaps = 178/660 (26%)

Query: 66  EDSNCLPIAESEIHLGENGAAGKPSAQNQEI--LLELENKKKKLSRLKAKDPGFSKFLES 123
           ++ +C  + +            K     +EI  ++  ++      RL      F   L  
Sbjct: 31  DNFDCKDVQDMP----------KSILSKEEIDHIIMSKDAVSGTLRL------FWTLLSK 74

Query: 124 HDKGLKSFRNE----------NAYSDEDERSDDGMQSMDEDGPHLYLNKLLTSSAINSWC 173
            ++ ++ F  E          +    E  +     +   E       ++L   + + +  
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE-----QRDRLYNDNQVFAKY 129

Query: 174 HLVKEQHNASAFISLLNAYRA---ACHYGAESTGILGSG-SGAPMLDCETFCKILMFVLR 229
           ++ + Q       +LL    A            G+LGSG +    +  +  C       +
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLID------GVLGSGKT---WVALDV-CLSYKVQCK 179

Query: 230 EADDVFREMLGISSNCKRDTILGLKNNSKWKTVRPLIKSYLRSTLFMLNQATDSEILAFS 289
               +F   L    NC     +          +  L K   +      +++  S  +   
Sbjct: 180 MDFKIFWLNLK---NCNSPETV----------LEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 290 LNRLRTSIVFFAAFPLLIRRLIKIAVHLWATGEETVSFHSFLILQDVASGFSSDCFDLCL 349
           ++ ++  +          RRL+K   +           +  L+L +V +           
Sbjct: 227 IHSIQAEL----------RRLLKSKPYE----------NCLLVLLNVQNA---------- 256

Query: 350 IKMYKAFIGHCK------------FAEPALFKH--LQFLRNSFVELCSQDLLRSSNKAKV 395
            K + AF   CK            F   A   H  L     +      + LL        
Sbjct: 257 -KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL--LKYLDC 313

Query: 396 SINNLSRI------LQLGL-QTKKKEAVKKICSWQYANCIDLWVTYISHCIHDYDLQPL- 447
              +L R        +L +     ++ +    +W++ NC  L  T I   ++   L+P  
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL-TTIIESSLN--VLEPAE 370

Query: 448 ---LYIIIQIINGMATLFPGPRYLPLRCKCIEWLNHLSSSSGIFIPVTSLMLDVLE-YKV 503
              ++  + +       FP   ++P     + W + + S          ++++ L  Y +
Sbjct: 371 YRKMFDRLSV-------FPPSAHIPTILLSLIWFDVIKS-------DVMVVVNKLHKYSL 416

Query: 504 SKEVGKPGK----DFNFSSAVKLPK----H--WLKSRNFREDCVFSAIELLSAHFAQWSY 553
            ++  K              VKL      H   +   N  +   F + +L+  +  Q+ Y
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT--FDSDDLIPPYLDQYFY 474

Query: 554 -HISFPELATIPLIHLRKFQEKSDVESLRRVVKRFIDVVEQNIEFVKKKRDEVAFSPNDQ 612
            HI           HL+  +    +   R V   F+D       F+++K    + + N  
Sbjct: 475 SHIGH---------HLKNIEHPERMTLFRMV---FLD-----FRFLEQKIRHDSTAWNAS 517

Query: 613 QSVEAFLQ-LEKCSGNTPFTQYYRSVMEKAASRSLIMNENKSFLEQKKQK--RKRGQNIV 669
            S+   LQ L+          Y   + +       ++N    FL + ++     +  +++
Sbjct: 518 GSILNTLQQLKF---------YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00