Citrus Sinensis ID: 005537

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-
Protein Sequence
MEGVAIGAPASSSTASCYVSWEEVNASSDRGRREVHYYLKRRDGCGSDLAVIGKEKSSRHMSYRYVISNTSFTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGKEVRLLDGESFKDVQSGTLGQYTKEFLWLGSSWMSRKKRKHYQSFCRNGVKVSVHDFVYVLAEENKRLIAYLEDMYEDSRGNKMVVVRWFHKIDEVGIFLPHNFNDREIFFSLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQLQPFICDKQFENDDVKPFDITLVKGYWRQEIIRHLFTFTSPKNCSSSQQPFDGQRAEKIVNDVVETRPKKRLRQSKDADVCDYTNRKEPMDAACMDLKISTKSSVDGGVGTLAGVGGAALLSKKEADPSSQYLKVGSHVEVLSQDSGMRGCWYRASVIKKHKDKVKVRYNDVQDAADEVNLLEEWVLASRVAAPDQLGLRVSGRRIVRPSPESHKGRVSWAIDVGTIVDAWWHDGWWEGIVIQKDSEDKLHVYFPGEKQKSIFSRGDLRHSQEWFGNGWMFIKERSDVVSSILCCLGTKQDEEKSSDGNSVQATLCAGGQQFNSETEHGESLSDSGDDKIKNSNPVLDLAKDDLLAQLKWKSSRKRRRGGGSSVHRLHCSDPEGKHTRAVVGSGFCERFLFPASIKVDDNCKYMRGSLFKSSVVSPLTSLVMSR
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEEEEEEEccccccEEEEEEEEcccccccEEEEEccccccccEEEEEEEccccccccHHcccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccEEEEEEEccEEEEEccEEEEEEccccccEEEEEEEEEcccccEEEEEEEEEcccccccccccccccccEEEEcccccccccEEEEEEEEEccccHHHccccccccccccEEEEEEEEcccccEEEEEcccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEEEEEEEcccEEEEEcccccccccccccEEEEEEcEEccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEEEEccccEEEEEEcccccEEEEEccccccccEEccccEEEEccccccEEccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccEEcc
Secondary Structure Prediction (SSPRO)
cccEEEEccccccccccEEEEEEEEEccccccEEEEEEEEcccccccEEEEEEccccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHccccccccHHHccccccccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHHHHcccEEEEEEcEEEEEccccccEEEEEEEccHccccccEEEEEEEEcccEEEEEccccccccEEEEEcccEEEEEEEEcccEEEEcHHHHHHHHHHcccccccEEEEEEEEcccccccccHHHHcccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEcEEEEEEEEEEcccEEEEEEEccccccccccccEEEEEcccccccccccccccccccccccccccccccEEEEccccEEEEEEccccEEEEEEEEccccEEEEEEcccccEEEEEHHHccccHEcccccEEcccccccHcccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccHHcccHHccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcc
Coil and Loop (DISEMBL)
megvaigapassstascyvsweevnassdrgrrEVHYYLKRrdgcgsdlavigkekssrhmSYRYVISNTSFTTSLYKLRSRREVVDWLNSIvsgspvlkssqfagrflggkevrlldgesfkdvqsgtlgQYTKEFLWLGSSWMSRKKRKHYQsfcrngvkvsVHDFVYVLAEENKRLIAYLEDMYEDSRGNKMVVVRWFHKIDevgiflphnfndrEIFFSLCLQDLSIECIDGlatvlspqhfekfmneatypqlqpficdkqfenddvkpfdiTLVKGYWRQEIIRHLftftspkncsssqqpfdgqrAEKIVNDVVEtrpkkrlrqskdadvcdytnrkepmdaacmdlkistkssvdggvgtlAGVGGAAllskkeadpssqylkvgshvevlsqdsgmrgcwyRASVIKKHKDKVKVRYNDVQDAADEVNLLEEWVLASrvaapdqlglrvsgrrivrpspeshkgrvsWAIDVGTIVDAWWHDGWWEGIViqkdsedklhvyfpgekqksifsrgdlrhsqewfgnGWMFIKERSDVVSSILCClgtkqdeekssdgnsvQATLcaggqqfnsetehgeslsdsgddkiknsnpvldlAKDDLLAQLKWKssrkrrrgggssvhrlhcsdpegkhtravvgsgfcerflfpasikvddnckymrgslfkssvvspltslvmsr
Flexible Loop (DISEMBL)
megvaigapassstascyvsweevnassdrgrrEVHYylkrrdgcgsdlavigkekssrhmsyryvisntsfttslyklRSRREVVDWLNSIvsgspvlkssqfaGRFLGGKEVRLLDGesfkdvqsgtlgqYTKEFLWLGSSWMSRKKRKHYQsfcrngvkvsVHDFVYVLAEENKRLIAYLEDMYEDSRGNKMVVVRWFHKIDEVGIFLPHNFNDREIFFSLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQLQPFICDKQFENDDVKPFDITLVKGYWRQEIIRHLFTFTSPKncsssqqpfdgqraEKIVNDvvetrpkkrlrqskdadvcdytnrkepmdaACMDLKISTKSSVDGGVGTLAGVGGAALLSKKEADPSSQYLKVGSHVevlsqdsgmrgCWYRAsvikkhkdkvKVRYNDVQDAADEVNLLEEWVLAsrvaapdqlglrvsgrrivrpspeshkgrvswaIDVGTIVDAWWHDGWWEGIVIQKDSEDKLHVYFPGekqksifsrgdLRHSQEWFGNGWMFIKERSDVVSSILCCLGTKqdeekssdgNSVQATLCAGGQQFNSETEHGESLSDSGDDKIKNSNPVLDLAKDDLLAQLkwkssrkrrrgggssvhrlhcsdpegkhTRAVVGSGFCERFLFPASIKVDDNCKYMRGslfkssvvspltslvmsr
Low Complexity Region (SEG)
MEGVAIGAPASSSTASCYVSWEEVNASSDRGRREVHYYLKRRDGCGSDLAVIGKEKSSRHMSYRYVISNTSFTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGKEVRLLDGESFKDVQSGTLGQYTKEFLWLGSSWMSRKKRKHYQSFCRNGVKVSVHDFVYVLAEENKRLIAYLEDMYEDSRGNKMVVVRWFHKIDEVGIFLPHNFNDREIFFSLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQLQPFICDKQFENDDVKPFDITLVKGYWRQEIIRHLFTFTSPKNCSSSQQPFDGQRAEKIVNDVVETRPKKRLRQSKDADVCDYTNRKEPMDAACMDLKISTKSSvdggvgtlagvggaallSKKEADPSSQYLKVGSHVEVLSQDSGMRGCWYRASVIKKHKDKVKVRYNDVQDAADEVNLLEEWVLASRVAAPDQLGLRVSGRRIVRPSPESHKGRVSWAIDVGTIVDAWWHDGWWEGIVIQKDSEDKLHVYFPGEKQKSIFSRGDLRHSQEWFGNGWMFIKERSDVVSSILCCLGTKQDEEKSSDGNSVQATLCAGGQQFNSETEHGESLSDSGDDKIKNSNPVldlakddllaqlkWkssrkrrrgggssVHRLHCSDPEGKHTRAVVGSGFCERFLFPASIKVDDNCKYMRGSLFKSSVVSPLTSLVMSR
Disordered region (IsUnstruct)
****************CYVSWEEV********REVHYYLKRRDGCGSDLAVIGKEKSSRHMSYRYVISNTSFTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGKEVRLLDGESFKDVQSGTLGQYTKEFLWLGSSWMSRKKRKHYQSFCRNGVKVSVHDFVYVLAEENKRLIAYLEDMYEDSRGNKMVVVRWFHKIDEVGIFLPHNFNDREIFFSLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQLQPFICDKQFENDDVKPFDITLVKGYWRQEIIRHLFTFT******************************************************CMDLKI*****VDGGVGTLAGVGGAAL***********YLKVGSHVEVLSQDSGMRGCWYRASVIKKHKDKVKVRYNDVQDAADEVNLLEEWVLASRVAAPDQLGLRVSGRRIV********GRVSWAIDVGTIVDAWWHDGWWEGIVIQKDSEDKLHVYFPGEKQKSIFSRGDLRHSQEWFGNGWMFIKERSDVVSSILCCLG*****************************************************************************************TRAVVGSGFCERFLFPASIKVDDNCKYMRGSLFKSSVV**********
Disordered Region (DISOPRED)
*************TASCYVSWEEVNASSDRGRREVHYYLKRRDGCGSDLAVIGKEKSSRHMSYRYVISNTSFTTSLYKLRSRREVVDWLNS**********************************************LWLGSSWMSRKKRKHYQSFCRNGVKVSVHDFVYVLAEENKRLIAYLEDMYEDSRGNKMVVVRWFHKIDEVGI***HNFNDREIFFSLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQLQPFICDKQFENDDVKPFDITLVKGYWRQEI**************************************************************************DGGVGTLAGVGGAALLSKKEADPSSQYLKVGSHVEVLSQDSGMRGCWYRASVIKKHKDKVKVRYNDVQDAADEVNLLEEWVLASR***************************VSWAIDVGTIVDAWWHDGWWEGIVIQKDSEDKLHVYFPGEKQKSIFSRGDLRHSQEWFGNGWMFIKE**************************************************************************************************************************VDDNCKYMRGSLF*SSVVSPLTSLVMS*
Disordered Region (DISEMBL)
***************SCYVSWEEVNASSDRGRREVHYYLKRRDGCGSDLAVIGKEKSSRHMSYRYVISNTSFTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGKEVRLLDGESFKDVQSGTLGQYTKEFLWLGSSWMSRKKRKHYQSFCRNGVKVSVHDFVYVLAEENKRLIAYLEDMYEDSRGNKMVVVRWFHKIDEVGIFLPHNFNDREIFFSLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQLQPFICDKQFENDDVKPFDITLVKGYWRQEIIRHLFTFTSP************QRAEKIVNDVVETRPKKRLRQSKDADVCDYTNRKEPMDAACMDLKISTKSSVDGGVGTLAGVGGAALLSKKEADPSSQYLKVGSHVEVLSQDSGMRGCWYRASVIKKHKDKVKVRYNDVQDAADEVNLLEEWVLASRVAAPDQLGLRVSGRRIVRPSPESHKGRVSWAIDVGTIVDAWWHDGWWEGIVIQKDSEDKLHVYFPGEKQKSIFSRGDLRHSQEWFGNGWMFIKERSDVVSSILCCLGTK***********VQATLCAGGQQFN*************DDKIKNSNPVLDLAKDDLLAQLKWK**************RLHCSDPEGKHTRAVVGSGFCERFLFPASIKVDDNCKYMRGSLFKSSVVSPLTSLVMSR
Disordered Region (DISPRO)
*****I*AP*SSSTASCYVSWEEVNASSDRGRREVHYYLKRRDGCGSDLAVIGKEKSSRHMSYRYVISNTSFTTSLYKLRSRREVVDWLNSIVSG*******************************SGTLGQYTKEFLWLGSSWMSRKKRKHYQSFCRNGVKVSVHDFVYVLAEENKRLIAYLEDMYEDSRGNKMVVVRWFHKIDEVGIFLPHNFNDREIFFSLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQLQPFICDKQFENDDVKPFDITLVKGYWRQEIIRHLFTFT*******************************************************************************************QYLKVGSHVEVLSQDSGMRGCWYRASVIKKHKDKVKVRYNDVQDAADEVNLLEEWVLASRVAAPDQLGLRVSGRRIVRPSPESHKGRVSWAIDVGTIVDAWWHDGWWEGIVIQKDSEDKLHVYFPGEKQKSIFSRGDLRHSQEWFGNGWMFIKERSDVVSSILCCL***QD**K*****************************************VLDLAKDDLL*QLKW***********************************************DDNCKYMRGSLFKSSVVSPLT******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGVAIGAPASSSTASCYVSWEEVNASSDRGRREVHYYLKRRDGCGSDLAVIGKEKSSRHMSYRYVISNTSFTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGKEVRLLDGESFKDVQSGTLGQYTKEFLWLGSSWMSRKKRKHYQSFCRNGVKVSVHDFVYVLAEENKRLIAYLEDMYEDSRGNKMVVVRWFHKIDEVGIFLPHNFNDREIFFSLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQLQPFICDKQFENDDVKPFDITLVKGYWRQEIIRHLFTFTSPKNCSSSQQPFDGQRAEKIVNDVVETRPKKRLRQSKDADVCDYTNRKEPMDAACMDLKISTKSSVDGGVGTLAGVGGAALLSKKEADPSSQYLKVGSHVEVLSQDSGMRGCWYRASVIKKHKDKVKVRYNDVQDAADEVNLLEEWVLASRVAAPDQLGLRVSGRRIVRPSPESHKGRVSWAIDVGTIVDAWWHDGWWEGIVIQKDSEDKLHVYFPGEKQKSIFSRGDLRHSQEWFGNGWMFIKERSDVVSSILCCLGTKQDEEKSSDGNSVQATLCAGGQQFNSETEHGESLSDSGDDKIKNSNPVLDLAKDDLLAQLKWKSSRKRRRGGGSSVHRLHCSDPEGKHTRAVVGSGFCERFLFPASIKVDDNCKYMRGSLFKSSVVSPLTSLVMSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	691
359472972	731	PREDICTED: uncharacterized protein LOC10	0.989	0.935	0.567	0.0
147856929	669	hypothetical protein VITISV_000033 [Viti	0.956	0.988	0.582	0.0
255576463	685	DNA binding protein, putative [Ricinus c	0.965	0.973	0.573	0.0
224101713	629	predicted protein [Populus trichocarpa]	0.904	0.993	0.560	0.0
224108500	598	predicted protein [Populus trichocarpa]	0.817	0.944	0.578	0.0
356577654	669	PREDICTED: uncharacterized protein LOC10	0.962	0.994	0.517	0.0
449467377	692	PREDICTED: uncharacterized protein LOC10	0.956	0.955	0.520	0.0
449520461	692	PREDICTED: uncharacterized protein LOC10	0.956	0.955	0.520	0.0
357488501	685	Agenet and bromo-adjacent homology (BAH)	0.959	0.967	0.500	1e-176
297838619	649	hypothetical protein ARALYDRAFT_475982 [	0.930	0.990	0.455	1e-143

>gi|359472972|ref|XP_002279093.2| PREDICTED: uncharacterized protein LOC100242253 [Vitis vinifera]

 Score =  784 bits (2025), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/738 (56%), Positives = 509/738 (68%), Gaps = 54/738 (7%)

Query: 1   MEGVAIGAPASSSTASCYVSWEEVNASSDRGRREVHYYLKRRDGCGSDLAVIGKEKSSRH 60
           ME  A  +P SS+ +S +V WEEV  SSDRGRREVHYYLKR+DG  SDLAVIGKEKS RH
Sbjct: 1   MERPAATSP-SSTNSSAFVRWEEVFVSSDRGRREVHYYLKRKDG-SSDLAVIGKEKSLRH 58

Query: 61  MSYRYVISNTSF-----TTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGKEVR 115
           MSY Y I N S      ++SL KLRSRREV+DWLNS+V    + K+ Q  G     K+  
Sbjct: 59  MSYHYAIRNRSLISIAPSSSLVKLRSRREVIDWLNSLVQDLSLPKTPQPTGPSQNNKDAY 118

Query: 116 LLDGESFKDVQSGTLGQYTKEFLWLGSSWMSRKKRKHYQSFCRNGVKVSVHDFVYVLAEE 175
           +   +S KD+Q   LG +TKEFLWLGS W  RK+R HYQSF RNG+K+SVHDFVYVLAEE
Sbjct: 119 I---DSLKDIQLQRLGHFTKEFLWLGSPWTCRKRRNHYQSFRRNGIKISVHDFVYVLAEE 175

Query: 176 NKRLIAYLEDMYEDSRGNKMVVVRWFHKIDEVGIFLPHNFNDREIFFSLCLQDLSIECID 235
           +KRL+AYLEDMYEDSRGN+MVVVRWFHKIDEVGI LP NFNDREIFFSLC QDLSIECID
Sbjct: 176 DKRLVAYLEDMYEDSRGNRMVVVRWFHKIDEVGIVLPLNFNDREIFFSLCHQDLSIECID 235

Query: 236 GLATVLSPQHFEKFMNEATYPQLQPFICDKQFENDDVKPFDITLVKGYWRQEIIRHLFTF 295
           GLATVL PQHFEKF+NEAT+ QL+PF+C KQF+ND+VKPFDIT VKGYW+QEI+R+++T 
Sbjct: 236 GLATVLGPQHFEKFLNEATHTQLEPFVCHKQFDNDEVKPFDITQVKGYWKQEILRYMYTS 295

Query: 296 TSPKNCSSSQQPFDGQRAEKIVNDVVETRPKKRLRQSKDADVC-DYTNRKEPMDAACMDL 354
           T   +  S  Q  D    E  +ND   +RP KR  +S+DAD C   TN++E +D +  + 
Sbjct: 296 TLMPDVRS--QSSDDVGVEGNLNDASGSRPNKRHCRSEDADACLQLTNKEESVDTSRANF 353

Query: 355 KISTKSSVD--GGVGTLAGVGGAAL--LSKKEA--DPSSQYLKVGSHVEVLSQDSGMRGC 408
           +  + S +D      T A   G+A+  + +KEA      Q+L +GS VEVLSQDSG+RGC
Sbjct: 354 QNISNSLIDYRNEPETCALKDGSAVPFIHRKEAIIQKLPQFLAIGSQVEVLSQDSGIRGC 413

Query: 409 WYRASVIKKHKDKVKVRYNDVQDAADEVNLLEEWVLASRVAAPDQLGLRVSGRRIVRPSP 468
           W RA +IKKH+ KVKVRY D+ DAADE + LEEW+LASRVA PD+ GLR+ GR  +RP P
Sbjct: 414 WLRALIIKKHRCKVKVRYQDIMDAADETSNLEEWILASRVAVPDESGLRICGRTTIRPPP 473

Query: 469 E-SHKGRVSWAIDVGTIVDAWWHDGWWEGIVIQKDSEDKLHVYFP--------------- 512
             S+KGRVSWA DVG++VDAWWHDGWWEGIV+QK+SED++HVYFP               
Sbjct: 474 PGSNKGRVSWAFDVGSVVDAWWHDGWWEGIVVQKESEDRIHVYFPGLKRYPFQILNAMLM 533

Query: 513 ------------------GEKQKSIFSRGDLRHSQEWFGNGWMFIKERSDVVSSILCCLG 554
                             GEKQ+ +F R DLRHS+EW+ N W  +KER D+V+SIL    
Sbjct: 534 QNGNQRVVHILKLLYFFAGEKQELVFGRSDLRHSEEWYENSWKHMKERPDLVTSILSGRE 593

Query: 555 TKQDEEKSSDGNSVQATLCAGGQQFNSETEHGESLSDSGDDKIKNSNPVLDLAKDDLLAQ 614
           +K    KSSDG   Q  +C  G     E     S  DSG+DK+K    V DL KDD L+Q
Sbjct: 594 SKHVVSKSSDGKLAQTAICDIGWSKKDEGGCVNSQLDSGNDKLKGLGFVPDLLKDDTLSQ 653

Query: 615 LKWKSSRKRRRGGGSSVHRLHCSDPEGKHTRAVVGSGFCERFLFPASIKVD-DNCKYMRG 673
           LKWK+SRKRRR  G SV +LH +    K    ++GS  C+RF  P S+KVD +NCKY+  
Sbjct: 654 LKWKTSRKRRRVSGGSVQKLHVNVNTSKSASEIMGSHACDRFFIPKSLKVDCENCKYVGD 713

Query: 674 SLFKSSVVSPLTSLVMSR 691
           SLF SSVV PLT+LVMSR
Sbjct: 714 SLFSSSVVPPLTNLVMSR 731

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856929|emb|CAN78632.1| hypothetical protein VITISV_000033 [Vitis vinifera]

 Score =  776 bits (2005), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/699 (58%), Positives = 493/699 (70%), Gaps = 38/699 (5%)

Query: 1   MEGVAIGAPASSSTASCYVSWEEVNASSDRGRREVHYYLKRRDGCGSDLAVIGKEKSSRH 60
           ME  A  +P SS+ +S +V WEEV  SSDRGRREVHYYLKR+DG  SDLAVIGKEKS RH
Sbjct: 1   MERPAATSP-SSTNSSAFVRWEEVFVSSDRGRREVHYYLKRKDG-SSDLAVIGKEKSLRH 58

Query: 61  MSYRYVISNTSF-----TTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGKEVR 115
           MSY Y I N S      ++SL KLRSRREV+DWLNS+V    + K+ Q  G     K+  
Sbjct: 59  MSYHYAIRNRSLISIAPSSSLVKLRSRREVIDWLNSLVQDLSLPKTPQPTGPSQNNKDAY 118

Query: 116 LLDGESFKDVQSGTLGQYTKEFLWLGSSWMSRKKRKHYQSFCRNGVKVSVHDFVYVLAEE 175
           +   +S KD+Q   LG +TKEFLWLGS W  RK+R HYQSF RNG+K+SVHDFVYVLAEE
Sbjct: 119 I---DSLKDIQLQRLGHFTKEFLWLGSPWTCRKRRNHYQSFRRNGIKISVHDFVYVLAEE 175

Query: 176 NKRLIAYLEDMYEDSRGNKMVVVRWFHKIDEVGIFLPHNFNDREIFFSLCLQDLSIECID 235
           +KRL+AYLEDMYEDSRGN+MVVVRWFHKIDEVGI LP NFNDREIFFSLC QDLSIECID
Sbjct: 176 DKRLVAYLEDMYEDSRGNRMVVVRWFHKIDEVGIVLPLNFNDREIFFSLCHQDLSIECID 235

Query: 236 GLATVLSPQHFEKFMNEATYPQLQPFICDKQFENDDVKPFDITLVKGYWRQEIIRHLFTF 295
           GLATVL PQHFEKF+NEAT+ QL+PF+C KQF+ND+VKPFDIT VKGYW+QEI+R+++T 
Sbjct: 236 GLATVLGPQHFEKFLNEATHTQLEPFVCHKQFDNDEVKPFDITQVKGYWKQEILRYMYTS 295

Query: 296 TSPKNCSSSQQPFDGQRAEKIVNDVVETRPKKRLRQSKDADVC-DYTNRKEPMDAACMDL 354
           T   +  S  Q  D    E  +ND   +RP KR  +S+DAD C   TN++E +D +  + 
Sbjct: 296 TLMPDVRS--QSSDDVGVEGNLNDASGSRPNKRHCRSEDADACLQLTNKEESVDTSRANF 353

Query: 355 KISTKSSVDGGVGTLAGVGGAALLSKKEADPSSQYLKVGSHVEVLSQDSGMRGCWYRASV 414
           +  + S +D                    +P +  LK G      S DSG+RGCW RA +
Sbjct: 354 QNISNSLID-----------------YRNEPETCALKDG------SADSGIRGCWLRALI 390

Query: 415 IKKHKDKVKVRYNDVQDAADEVNLLEEWVLASRVAAPDQLGLRVSGRRIVRPSPE-SHKG 473
           IKKH+ KVKVRY D+ DAADE + LEEW+LASRVA PD+ GLR+ GR  +RP P  S+KG
Sbjct: 391 IKKHRCKVKVRYQDIMDAADETSNLEEWILASRVAVPDESGLRICGRTTIRPPPPGSNKG 450

Query: 474 RVSWAIDVGTIVDAWWHDGWWEGIVIQKDSEDKLHVYFPGEKQKSIFSRGDLRHSQEWFG 533
           RVSWA DVG++VDAWWHDGWWEGIV+QK+SED++HVYFPGEKQ+ +F R DLRHS+EW+ 
Sbjct: 451 RVSWAFDVGSVVDAWWHDGWWEGIVVQKESEDRIHVYFPGEKQELVFGRSDLRHSEEWYE 510

Query: 534 NGWMFIKERSDVVSSILCCLGTKQDEEKSSDGNSVQATLCAGGQQFNSETEHGESLSDSG 593
           N W  +KER D+V+SIL    +K    KSSDG   Q  +C  G     E     S  DSG
Sbjct: 511 NSWKHMKERPDLVTSILSGRESKHVVSKSSDGKLAQTAICDIGWSKKDEGGCVNSQLDSG 570

Query: 594 DDKIKNSNPVLDLAKDDLLAQLKWKSSRKRRRGGGSSVHRLHCSDPEGKHTRAVVGSGFC 653
           +DK+K    V DL KDD L+QLKWK+SRKRRR  G SV +LH +    K    ++GS  C
Sbjct: 571 NDKLKGLGFVPDLLKDDTLSQLKWKTSRKRRRVSGGSVQKLHVNVNTSKSASEIMGSHAC 630

Query: 654 ERFLFPASIKVD-DNCKYMRGSLFKSSVVSPLTSLVMSR 691
           +RF  P S+KVD +NCKY+  SLF SSVV PLT+LVMSR
Sbjct: 631 DRFFIPKSLKVDCENCKYVGDSLFSSSVVPPLTNLVMSR 669

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576463|ref|XP_002529123.1| DNA binding protein, putative [Ricinus communis] gi|223531402|gb|EEF33236.1| DNA binding protein, putative [Ricinus communis]

 Score =  748 bits (1932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/682 (57%), Positives = 483/682 (70%), Gaps = 15/682 (2%)

Query: 18  YVSWEEVNASSDRGRREVHYYLKRRDGCGSDLAVIGKEKSSRHMSYRYV--ISNTSFTTS 75
           YVSWEEVN SSD+GRREVHYYLKR+DG G DLAVIGKE+S RHMSY Y   I N S +T 
Sbjct: 11  YVSWEEVNVSSDKGRREVHYYLKRKDG-GLDLAVIGKERSLRHMSYHYAAAIINNSPSTG 69

Query: 76  LYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGKEVRLLDGESFKDVQSGTLGQYTK 135
           L+KL+SRREVVDWLNSIVS S  L+    +G +L   +   LD ++FK  Q   LGQYTK
Sbjct: 70  LWKLKSRREVVDWLNSIVSDSTPLELFHLSG-YLDNIDASELDIDNFKGTQLRKLGQYTK 128

Query: 136 EFLWLGSSWMSRKKRKHYQSFCRNGVKVSVHDFVYVLAEENKRLIAYLEDMYEDSRGNKM 195
           EF WLG SW  R++RKHYQSF RNGV++SV+DFV+VLAEE+K+L+A+LEDMYED++GNKM
Sbjct: 129 EFSWLGPSWTCRRRRKHYQSFSRNGVEISVYDFVFVLAEEDKQLVAHLEDMYEDTKGNKM 188

Query: 196 VVVRWFHKIDEVGIFLPHNFNDREIFFSLCLQDLSIECIDGLATVLSPQHFEKFMNEATY 255
           VVVRW+HKIDEVGI LP  FNDREIF SLCLQDLSIECI+G+ATVLSPQHFEKF+ EA  
Sbjct: 189 VVVRWYHKIDEVGIALPRTFNDREIFSSLCLQDLSIECINGIATVLSPQHFEKFLKEARL 248

Query: 256 PQLQPFICDKQFENDDVKPFDITLVKGYWRQEIIRHLFTFTSPKNCSSSQQPFDGQRAEK 315
             L PF+C KQFENDD++PFDIT VKGYW+QEI R+L+T +S      SQ P   Q+ E 
Sbjct: 249 IVLDPFVCYKQFENDDIRPFDITQVKGYWKQEIFRYLYTVSSIMEQRDSQHPDAAQKLET 308

Query: 316 IVNDVVETRPKKRLRQSKDADVCDYTNRKEPMDAACMDLKISTKSSVDGGVGT----LAG 371
            +ND  E RP+KR  +SKD D+  +   K+P+D   +++     S  D    T    L G
Sbjct: 309 NINDDSEFRPRKRHHRSKD-DL--HAGAKQPVDTMDVNMHDVDNSWADCKRPTEMCCLTG 365

Query: 372 VGGAALLSKKEADPSS-QYLKVGSHVEVLSQDSGMRGCWYRASVIKKHKDKVKVRYNDVQ 430
               A LS   A+ +  QYLKVGS VEVLSQDSG+RGCW+RA +IK HK KVKVRY D++
Sbjct: 366 GESIAPLSTTGAEQNPLQYLKVGSKVEVLSQDSGIRGCWFRALIIKVHKSKVKVRYEDIK 425

Query: 431 DAADEVNLLEEWVLASRVAAPDQLGLRVSGRRIVRPSPESHKGRVSWAIDVGTIVDAWWH 490
           DA +E N LEEW+L +RVA  D LG RV GR I+RP P+ +KGRV W  +VGT VD WWH
Sbjct: 426 DAENEANNLEEWILTTRVAVSDDLGFRVCGRPIIRPLPKCNKGRVLWGFEVGTAVDVWWH 485

Query: 491 DGWWEGIVIQKDSEDKLHVYFPGEKQKSIFSRGDLRHSQEWFGNGWMFIKERSDVVSSIL 550
           D W EGIV+ ++SE + HVYFPGEKQ+ +F   DLRHSQEW GN WM +K R D+++S+ 
Sbjct: 486 DVWQEGIVVSEESEHRFHVYFPGEKQELVFGCADLRHSQEWLGNRWMHLKCRPDILTSLS 545

Query: 551 CCLGTKQDEEKSSDGNSVQATLCAGGQQFNSETEHGESLSDSGDDKIKNSNPVLDLAKDD 610
             L  +    KS++  S++  +C   Q    +T   + L DSG D       V DL KDD
Sbjct: 546 SFLDKQV--VKSNESKSIENGICDTRQSEKFKTGCPDDLLDSGSDGDGELKVVRDLLKDD 603

Query: 611 LLAQLKWKSSRKRRRGGGSSVHRLHCSDPEGKHTRAVVGSGFCERFLFPASIKVD-DNCK 669
            LAQL+W SS+KRRR  G S  R+H  +  GK +  V+ S  CERF+FP SIKVD +NCK
Sbjct: 604 RLAQLRWNSSKKRRRSSGISTQRMHPKESGGKSSSEVISSRGCERFVFPMSIKVDHENCK 663

Query: 670 YMRGSLFKSSVVSPLTSLVMSR 691
           ++R SLF S+V  PLT+L+MSR
Sbjct: 664 FLRDSLFSSAVAQPLTNLIMSR 685

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101713|ref|XP_002312391.1| predicted protein [Populus trichocarpa] gi|222852211|gb|EEE89758.1| predicted protein [Populus trichocarpa]

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/678 (56%), Positives = 455/678 (67%), Gaps = 53/678 (7%)

Query: 18  YVSWEEVNASSDRGRREVHYYLKRRDGCGSDLAVIGKEKSSRHMSYRYVIS---NTSFTT 74
           YVSWEEVN SSD+GRREV YYLK+ DG G DLA+IGKEKS RHMSY + IS   N    T
Sbjct: 1   YVSWEEVNVSSDKGRREVKYYLKKNDG-GIDLAIIGKEKSLRHMSYYFAISIRSNFYSMT 59

Query: 75  SLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGKEVRLLDGESFKDVQSGTLGQYT 134
              KL+SRREV+DWLNSIVS    L +S  A       +  L   E   D QS  LG Y 
Sbjct: 60  PPVKLKSRREVIDWLNSIVSVQ-FLFASLAARSLFEPCDFILFFSED--DNQSQKLGHYY 116

Query: 135 KEFLWLGSSWMSRKKRKHYQSFCRNGVKVSVHDFVYVLAEENKRLIAYLEDMYEDSRGNK 194
            EFLWLGS W  RK++KHY+SFCRNGVK+SVHDFVYVLAEE+KRL+AYLED+YEDS+GNK
Sbjct: 117 SEFLWLGSPWTCRKRKKHYESFCRNGVKISVHDFVYVLAEESKRLVAYLEDLYEDSKGNK 176

Query: 195 MVVVRWFHKIDEVGIFLPHNFNDREIFFSLCLQDLSIECIDGLATVLSPQHFEKFMNEAT 254
           MV+VRWFHKIDEVGI LPHNFNDREIFFS CLQDLSIECIDGLA VLSPQHF+KF+NEA 
Sbjct: 177 MVMVRWFHKIDEVGIVLPHNFNDREIFFSRCLQDLSIECIDGLAIVLSPQHFKKFLNEAV 236

Query: 255 YPQLQPFICDKQFENDDVKPFDITLVKGYWRQEIIRHLFTFTSPKNCSSSQQPFDGQRAE 314
             +  PF+C KQF+N++V PFDIT V+GYW QEI+R+L T  +    ++SQ PF G R E
Sbjct: 237 RTRFNPFVCYKQFDNEEVTPFDITQVEGYWSQEILRYL-TIPTSNYLANSQHPFSGSRGE 295

Query: 315 KIVNDVVETRPKKRLRQSKDADVCDYTNRKEPMDAACMDLKISTKSSVDGGVGTLAGVGG 374
              ND    RPKK LR+SKD D        E M                           
Sbjct: 296 GNDNDASRMRPKKMLRRSKDND--------EVMQNP------------------------ 323

Query: 375 AALLSKKEADPSSQYLKVGSHVEVLSQDSGMRGCWYRASVIKKHKDKVKVRYNDVQDAAD 434
                        Q L V S VEVLSQDSG+RGCW+RAS+IKKHKDKVKVRY D+ DAA+
Sbjct: 324 ------------PQSLNVSSEVEVLSQDSGIRGCWFRASIIKKHKDKVKVRYQDISDAAN 371

Query: 435 EVNLLEEWVLASRVAAPDQLGLRVSGRRIVRPSPESHKGRVSWAIDVGTIVDAWWHDGWW 494
           E   LEEWVL SRVAAPDQL +R+SGR +VRP+P+ +KG+++   DVGT VDAWW+D WW
Sbjct: 372 EAQKLEEWVLVSRVAAPDQLAIRISGRTVVRPTPQFNKGQMASVADVGTAVDAWWNDAWW 431

Query: 495 EGIVIQKDSEDKLHVYFPGEKQKSIFSRGDLRHSQEWFGNGWMFIKERSDVVSSILCCLG 554
           EGIV+ K++ED++HV+FPG K++S+F   DLR S EW GN W  IKER D++S +  CL 
Sbjct: 432 EGIVVHKETEDRIHVFFPGVKKESVFCCSDLRLSLEWLGNAWKHIKERPDILSHLSSCLE 491

Query: 555 TKQDEEKSSDGNSVQATLCAGGQQFNSETEHGESLSDSGDDKIKNSNPVLDLAKDDLLAQ 614
            KQ    S +    +  +    Q   +  E G+   +S  D  K    + DL+KD LLAQ
Sbjct: 492 RKQVTFISDESKLAEVAIPGSRQSGKANPECGDYPFESRLDMRKEVKALPDLSKDKLLAQ 551

Query: 615 LKWKSSRKRRRGGGSSVHRLHCSDPEGKHTRAVVGSGFCERFLFPASIKVD-DNCKYMRG 673
           L+W S +KRRRG GSS H++H ++  G     VVGS   ERFL P S+KVD +NCKYM  
Sbjct: 552 LRWSSIKKRRRGSGSSGHKMHHNNNGGLRLSEVVGSNAGERFLIPTSLKVDHENCKYMGD 611

Query: 674 SLFKSSVVSPLTSLVMSR 691
           SLF  +VV PLT LVMSR
Sbjct: 612 SLFTCAVVQPLTGLVMSR 629

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108500|ref|XP_002314870.1| predicted protein [Populus trichocarpa] gi|222863910|gb|EEF01041.1| predicted protein [Populus trichocarpa]

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/574 (57%), Positives = 412/574 (71%), Gaps = 9/574 (1%)

Query: 124 DVQSGTLGQYTKEFLWLGSSWMSRKKRKHYQSFCRNGVKVSVHDFVYVLAEENKRLIAYL 183
           D+QS  LG Y+ EFLWLGS W+ RKKRKHY+SF RNGVK+S+HDFVYVLAEE+KRLIAYL
Sbjct: 28  DIQSQKLGHYSSEFLWLGSPWVCRKKRKHYESFYRNGVKISIHDFVYVLAEEDKRLIAYL 87

Query: 184 EDMYEDSRGNKMVVVRWFHKIDEVGIFLPHNFNDREIFFSLCLQDLSIECIDGLATVLSP 243
           ED+YED +GNKMV+VRWFHKIDEVGI LPHNFNDREIFFSLCLQDL+IECIDG+ATVLSP
Sbjct: 88  EDLYEDLKGNKMVMVRWFHKIDEVGIVLPHNFNDREIFFSLCLQDLNIECIDGVATVLSP 147

Query: 244 QHFEKFMNEATYPQLQPFICDKQFENDDVKPFDITLVKGYWRQEIIRHLFTFTSPKNCSS 303
           QHF+KF+NEA   +   F+CDK F+N+DV  FDIT V+GYWRQEI+ +L    S K  ++
Sbjct: 148 QHFKKFLNEAVCTRFNAFVCDKLFDNEDVNHFDITQVEGYWRQEILGYLSVLPS-KCLAN 206

Query: 304 SQQPFDGQRAEKIVNDVVETRPKKRLRQSKD-ADVCDYTNRKEPMDAACMDLKISTKSSV 362
           SQ P +G R E   N+    RPKKRLR+ KD  D C    RKE   A C +++    S +
Sbjct: 207 SQYPGNGLRVEGHDNNASRMRPKKRLRRLKDNGDFC--IVRKESTTARCFNMQNLHNSRI 264

Query: 363 DGGVG----TLAGVGGAALLSKKEADPSSQYLKVGSHVEVLSQDSGMRGCWYRASVIKKH 418
           D   G    +  G    A LS  E   + Q L V S VEVLSQDSG+RGCW+RAS+IKKH
Sbjct: 265 DSKTGNEICSQRGEEHTAFLSTTEVMQNPQNLHVDSEVEVLSQDSGIRGCWFRASIIKKH 324

Query: 419 KDKVKVRYNDVQDAADEVNLLEEWVLASRVAAPDQLGLRVSGRRIVRPSPESHKGRVSWA 478
           KDKVKVRY D+ DAADE N LEEWVLASRVAAPDQL +R+ GR +VRP+P+ +K R +  
Sbjct: 325 KDKVKVRYQDISDAADEANKLEEWVLASRVAAPDQLAIRIGGRTVVRPTPQFNKERAASV 384

Query: 479 IDVGTIVDAWWHDGWWEGIVIQKDSEDKLHVYFPGEKQKSIFSRGDLRHSQEWFGNGWMF 538
            DVGT VDAWW+D WWEG+V+QK+SED++HV+FPGEK++S+F   DLR SQEW GN W+ 
Sbjct: 385 ADVGTAVDAWWNDAWWEGVVVQKESEDRIHVFFPGEKKESVFCCSDLRLSQEWVGNEWIH 444

Query: 539 IKERSDVVSSILCCLGTKQDEEKSSDGNSVQATLCAGGQQFNSETEHGESLSDSGDDKIK 598
           I+ R D++S +  C   KQ + +S +    QA +    Q   +     +   DSG D  K
Sbjct: 445 IEGRPDILSHLSSCWERKQLKFRSDESKLAQAAIPDSRQSGKANPGCIDYSLDSGCDMGK 504

Query: 599 NSNPVLDLAKDDLLAQLKWKSSRKRRRGGGSSVHRLHCSDPEGKHTRAVVGSGFCERFLF 658
               V DL+KD+LLAQL+W+S +KRRRG GSS H++H  +  G+    V+GS   ER+L 
Sbjct: 505 ELKVVPDLSKDNLLAQLRWRSIKKRRRGSGSSGHKMHLYNNGGRRLSEVIGSNSGERYLI 564

Query: 659 PASIKVD-DNCKYMRGSLFKSSVVSPLTSLVMSR 691
           P ++KVD +NCKYM  SLF S+VV PL+SLVMSR
Sbjct: 565 PTALKVDHENCKYMGDSLFTSAVVQPLSSLVMSR 598

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577654|ref|XP_003556939.1| PREDICTED: uncharacterized protein LOC100817358 [Glycine max]

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/690 (51%), Positives = 454/690 (65%), Gaps = 25/690 (3%)

Query: 6   IGAPASSSTASCYVSWEEVNASSDRGRREVHYYLKRRDGCGSDLAVIGKEKSS-RHMSYR 64
           +G  +    +  YVSW+EV  S+D+GRREVHY LKRR G GSDLAV+GKEKS  RHMSYR
Sbjct: 1   MGTTSCEKKSVVYVSWDEVFVSNDKGRREVHYLLKRRGG-GSDLAVLGKEKSLLRHMSYR 59

Query: 65  YVISNTSFTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGKEVRLLDGESFKD 124
           Y I N +      KLRSRREVVDWL+SIVS       S      + GK     +  + KD
Sbjct: 60  YAIRNAALFKPYLKLRSRREVVDWLDSIVS------DSSSGDAVMVGKHGYEPEIGALKD 113

Query: 125 VQSGTLGQYTKEFLWLGSSWMSRKKRKHYQSFCRNGVKVSVHDFVYVLAEENKRLIAYLE 184
            Q   +   TKEF W+G  W  +K+RKHYQ++ RNG ++SVHDFV+VLAEE+KRL+AYLE
Sbjct: 114 NQLQKMHSCTKEFSWIGLPWTCKKRRKHYQAYKRNGFQISVHDFVFVLAEEDKRLVAYLE 173

Query: 185 DMYEDSRGNKMVVVRWFHKIDEVGIFLPHNFNDREIFFSLCLQDLSIECIDGLATVLSPQ 244
           D+YEDSRGN+MVVVRWFHKIDEVGI LPH+F+DRE+FFSL LQDLSIECIDGLA VLSP 
Sbjct: 174 DLYEDSRGNRMVVVRWFHKIDEVGIALPHSFSDREVFFSLYLQDLSIECIDGLAFVLSPG 233

Query: 245 HFEKFMNEATYPQLQPFICDKQFENDDVKPFDITLVKGYWRQEIIRHLFTFTSPKNCSSS 304
           H++KF NEA    L+PF+C+ QF+NDDVKPFDIT +KGYW+QEI+R+++     K+  SS
Sbjct: 234 HYKKFQNEACRTHLEPFMCNHQFDNDDVKPFDITRIKGYWKQEILRYMYAQLDLKSSGSS 293

Query: 305 QQPFDGQRAEKIVNDVVETRPKKRLRQSKDADVCDYTNRKEPMDAACMDLKISTKSSVDG 364
            Q       ++        RPKKRL       + +  + KE  D   +  +    S+   
Sbjct: 294 GQSDVSLELDENHTSTAFVRPKKRLC------LTEAADAKEAADLVGLSTENLNNSNTGN 347

Query: 365 GVGTLAGVGGAALLSKKEADPSSQYLKVGSHVEVLSQDSGMRGCWYRASVIKKHKDKVKV 424
             G L G        K + + +S +L VGS VEVLSQDSGMRGCW+RASVIKKHKDKVKV
Sbjct: 348 NSGKLVGHTNKTATIKGKNEHASHHLIVGSQVEVLSQDSGMRGCWFRASVIKKHKDKVKV 407

Query: 425 RYNDVQDAADEVNLLEEWVLASRVAAPDQLGLRVSGRRIVRPSPESHKGRVSWAIDVGTI 484
           +Y D+ DA DE   LEEWVLASR+A  D LGLR+ GR +VRP P S+K  +SW  DVG +
Sbjct: 408 QYQDILDAVDETKKLEEWVLASRIAVADCLGLRMRGRTMVRPDPPSNKRELSWVGDVGFV 467

Query: 485 VDAWWHDGWWEGIVIQKDSEDKLHVYFPGEKQKSIFSRGDLRHSQEWFGNGWMFIKERSD 544
           VDAWWHDGWWEGIV+QKDSE   HVYFPGEK  S+F  G+LR SQ+W GN W++++ER D
Sbjct: 468 VDAWWHDGWWEGIVVQKDSEANYHVYFPGEKVVSVFGPGNLRVSQDWVGNEWIYVRERPD 527

Query: 545 VVSSILCCLGTKQDEEKSSDGNSVQATLCAGGQQFNSETEHGESLSDSGDDKIKNSNPVL 604
           +V+S+L  L TKQ+   S    +    +   GQ         ++  DS  D+ +    V 
Sbjct: 528 LVASVLSSLKTKQNSNNSQSTGATTRDVIQSGQ--------SDTCLDSDKDRPRKPEVVP 579

Query: 605 DLAKDDLLAQL-KWKSSRKRRRGGGSSVHRLHCSDPEGKHTRAVVGSGFCERFLFPASIK 663
           DL K+DLL+QL    + ++RR    +S  +  C+D   K +  VV S   + F+ PAS+K
Sbjct: 580 DLLKNDLLSQLRWKTTRKRRRWSSATSYQKPQCTDTHQKRSPNVVTSNAPDSFVIPASLK 639

Query: 664 VD-DNCKYM-RGSLFKSSVVSPLTSLVMSR 691
           VD D+CKY+   S+F SSVV  LT++VM R
Sbjct: 640 VDHDDCKYVGDPSIFSSSVVPSLTNMVMCR 669

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467377|ref|XP_004151400.1| PREDICTED: uncharacterized protein LOC101211122 [Cucumis sativus]

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/697 (52%), Positives = 459/697 (65%), Gaps = 36/697 (5%)

Query: 10  ASSSTASC-YVSWEEVNASSDRGRREVHYYLKRRDGCGSDLAVIGKEKSSRHMSYRYVIS 68
           A+ + A C +VSW EV  SSDRGRREVHYYLK  DG  SDLAV+GKEKS RHMSY Y + 
Sbjct: 17  ATIAAAPCGFVSWYEVFVSSDRGRREVHYYLKSGDG-ASDLAVVGKEKSLRHMSYHYALQ 75

Query: 69  N-----TSFTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLG--GKEVRLLDGES 121
           N         TSL KL+SRREVV+WL+S+VS S   K+SQ + R +   G++    +  S
Sbjct: 76  NRFLNSLGLFTSLTKLKSRREVVEWLSSVVSDSQ-RKTSQPSDRMMDIEGEDACPSNSGS 134

Query: 122 FKDVQSGTLGQYTKEFLWLGSSWMSRKKRKHYQSFCRNGVKVSVHDFVYVLAEENKRLIA 181
            KDVQ   LGQYT++F W+G  W  ++KR+HY SF RNGVK+SVHDFVYVLAEE KRL+A
Sbjct: 135 KKDVQYIKLGQYTRDFSWVGCPWTCKRKRRHYPSFSRNGVKISVHDFVYVLAEEGKRLVA 194

Query: 182 YLEDMYEDSRGNKMVVVRWFHKIDEVGIFLPHNFNDREIFFSLCLQDLSIECIDGLATVL 241
           YLEDMYEDSR N+MVVVRWFHKIDEV I LP NFNDREIFFSLCLQDLSIECIDGLATVL
Sbjct: 195 YLEDMYEDSRSNRMVVVRWFHKIDEVDIVLPRNFNDREIFFSLCLQDLSIECIDGLATVL 254

Query: 242 SPQHFEKFMNEATYPQLQPFICDKQFENDDVKPFDITLVKGYWRQEIIRHLFTFTSPKNC 301
           SP HF+KF NEA + +L+P++C+KQF+NDD+K FDIT VKGYW+QEI+R+++  +S K  
Sbjct: 255 SPHHFQKFQNEAKHTRLEPYVCEKQFDNDDIKTFDITQVKGYWKQEILRYMYALSS-KAH 313

Query: 302 SSSQQPFDGQRAEKIVNDVVETRPKKRLRQSKDADVCDYTNRKEPMDAACMDLKISTKSS 361
             SQQ  D   A        E RP+KR R+S++ D+ +   R+    ++ ++L+ S   S
Sbjct: 314 GHSQQSEDDTSA--------EMRPRKRHRRSRNDDLQNAEKRQPGNTSSSLELRSSGNYS 365

Query: 362 VDGGVGTL-----AGVGGAALLSKKEADPSSQYLKVGSHVEVLSQDSGMRGCWYRASVIK 416
           VD     +      G      + K+  + SS    V S +EVLSQDSG+RGCW+RAS+IK
Sbjct: 366 VDLKNSDVVFSPKGGCASKTFMGKEMNNSSSSQFAVASEIEVLSQDSGIRGCWFRASIIK 425

Query: 417 KHKDKVKVRYNDVQDAADEVNLLEEWVLASRVAAPDQLGLRVSGRRIVRPSPESHKGRVS 476
           K  D VKV+Y+++QDA DE   L EW+ ASRVAA DQLGLR+SGR ++RP P S      
Sbjct: 426 KRGDMVKVQYHNLQDADDESTKLVEWLSASRVAAADQLGLRISGRLVIRPHP-SKGSNAP 484

Query: 477 WAIDVGTIVDAWWHDGWWEGIVIQKDSEDKLHVYFPGEKQKSIFSRGDLRHSQEWFGNGW 536
              +VG +VD W HDGWWEGI++QK+S+DK  +Y PGEKQ+ +    DLRHSQEW GN W
Sbjct: 485 LIYNVGAVVDVWRHDGWWEGIIVQKESDDKFRIYLPGEKQELVLGTDDLRHSQEWLGNRW 544

Query: 537 MFIKERSDVVSSILCCLGTKQDEEKSSDGNSVQATLCAGGQQFNSETEHGESLSDSGDDK 596
           M ++ER D+  SI+  +      +K S  +S Q  LC   Q     ++  E  S+S  DK
Sbjct: 545 MHLQERPDIAMSIMSRISNDGLPDKVSTMSS-QVALCDQKQPGEGGSQPSELRSNSLVDK 603

Query: 597 IKNSNPVLDLAKDDLLAQLKWKSSRKRRRGGGSSVHRLHCSDPEGKHTRAVVGSGFCE-R 655
            K S  + DL+KD LL +L+W         G     +   S         V  S  CE  
Sbjct: 604 AKESCTIPDLSKDGLLTKLRWT--------GSKKRSQPSSSSSGKSFPSPVASSSPCESS 655

Query: 656 FLFPASIKVD-DNCKYMRGSLFKSSVVSPLTSLVMSR 691
           F+ P+S+K+D DNCKYM  SLF SSVV PL+SLVMSR
Sbjct: 656 FMIPSSMKMDHDNCKYMGDSLFNSSVVPPLSSLVMSR 692

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520461|ref|XP_004167252.1| PREDICTED: uncharacterized protein LOC101229627 [Cucumis sativus]

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/697 (52%), Positives = 459/697 (65%), Gaps = 36/697 (5%)

Query: 10  ASSSTASC-YVSWEEVNASSDRGRREVHYYLKRRDGCGSDLAVIGKEKSSRHMSYRYVIS 68
           A+ + A C +VSW EV  SSDRGRREVHYYLK  DG  SDLAV+GKEKS RHMSY Y + 
Sbjct: 17  ATIAAAPCGFVSWYEVFVSSDRGRREVHYYLKSGDG-ASDLAVVGKEKSLRHMSYHYALQ 75

Query: 69  N-----TSFTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLG--GKEVRLLDGES 121
           N         TSL KL+SRREVV+WL+S+VS S   K+SQ + R +   G++    +  S
Sbjct: 76  NRFLNSLGLFTSLTKLKSRREVVEWLSSVVSDSQ-RKTSQPSDRMMDIEGEDACPSNSGS 134

Query: 122 FKDVQSGTLGQYTKEFLWLGSSWMSRKKRKHYQSFCRNGVKVSVHDFVYVLAEENKRLIA 181
            KDVQ   LGQYT++F W+G  W  ++KR+HY SF RNGVK+SVHDFVYVLAEE KRL+A
Sbjct: 135 KKDVQYIKLGQYTRDFSWVGCPWTCKRKRRHYPSFSRNGVKISVHDFVYVLAEEGKRLVA 194

Query: 182 YLEDMYEDSRGNKMVVVRWFHKIDEVGIFLPHNFNDREIFFSLCLQDLSIECIDGLATVL 241
           YLEDMYEDSR N+MVVVRWFHKIDEV I LP NFNDREIFFSLCLQDLSIECIDGLATVL
Sbjct: 195 YLEDMYEDSRSNRMVVVRWFHKIDEVDIVLPRNFNDREIFFSLCLQDLSIECIDGLATVL 254

Query: 242 SPQHFEKFMNEATYPQLQPFICDKQFENDDVKPFDITLVKGYWRQEIIRHLFTFTSPKNC 301
           SP HF+KF NEA + +L+P++C+KQF+NDD+K FDIT VKGYW+QEI+R+++  +S K  
Sbjct: 255 SPHHFQKFQNEAKHTRLEPYVCEKQFDNDDIKTFDITQVKGYWKQEILRYMYALSS-KAH 313

Query: 302 SSSQQPFDGQRAEKIVNDVVETRPKKRLRQSKDADVCDYTNRKEPMDAACMDLKISTKSS 361
             SQQ  D   A        E RP+KR R+S++ D+ +   R+    ++ ++L+ S   S
Sbjct: 314 GHSQQSEDDTSA--------EMRPRKRHRRSRNDDLQNAEKRQPGNTSSSLELRSSGNYS 365

Query: 362 VDGGVGTL-----AGVGGAALLSKKEADPSSQYLKVGSHVEVLSQDSGMRGCWYRASVIK 416
           VD     +      G      + K+  + SS    V S +EVLSQDSG+RGCW+RAS+IK
Sbjct: 366 VDLKNSDVVFSPKGGCASKTFMGKEMNNSSSSQFAVASEIEVLSQDSGIRGCWFRASIIK 425

Query: 417 KHKDKVKVRYNDVQDAADEVNLLEEWVLASRVAAPDQLGLRVSGRRIVRPSPESHKGRVS 476
           K  D VKV+Y+++QDA DE   L EW+ ASRVAA DQLGLR+SGR ++RP P S      
Sbjct: 426 KRGDMVKVQYHNLQDADDESTKLVEWLSASRVAAADQLGLRISGRLVIRPHP-SKGSNAP 484

Query: 477 WAIDVGTIVDAWWHDGWWEGIVIQKDSEDKLHVYFPGEKQKSIFSRGDLRHSQEWFGNGW 536
              +VG +VD W HDGWWEGI++QK+S+DK  +Y PGEKQ+ +    DLRHSQEW GN W
Sbjct: 485 LIYNVGAVVDVWRHDGWWEGIIVQKESDDKFRIYLPGEKQELVLGTDDLRHSQEWLGNRW 544

Query: 537 MFIKERSDVVSSILCCLGTKQDEEKSSDGNSVQATLCAGGQQFNSETEHGESLSDSGDDK 596
           M ++ER D+  SI+  +      +K S  +S Q  LC   Q     ++  E  S+S  DK
Sbjct: 545 MHLQERPDIAMSIMSRISNDGLPDKVSTMSS-QVALCDQKQPGEGGSQPSELRSNSLVDK 603

Query: 597 IKNSNPVLDLAKDDLLAQLKWKSSRKRRRGGGSSVHRLHCSDPEGKHTRAVVGSGFCE-R 655
            K S  + DL+KD LL +L+W         G     +   S         V  S  CE  
Sbjct: 604 AKESCTIPDLSKDGLLTKLRWT--------GSKKRSQPSSSSSGKSFPSPVASSSPCESS 655

Query: 656 FLFPASIKVD-DNCKYMRGSLFKSSVVSPLTSLVMSR 691
           F+ P+S+K+D DNCKYM  SLF SSVV PL+SLVMSR
Sbjct: 656 FMIPSSMKMDHDNCKYMGDSLFNSSVVPPLSSLVMSR 692

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357488501|ref|XP_003614538.1| Agenet and bromo-adjacent homology (BAH) domain-containing protein-like protein [Medicago truncatula] gi|355515873|gb|AES97496.1| Agenet and bromo-adjacent homology (BAH) domain-containing protein-like protein [Medicago truncatula]

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 350/699 (50%), Positives = 466/699 (66%), Gaps = 36/699 (5%)

Query: 8   APASSSTASC-----YVSWEEVNASSDRGRREVHYYLKRRDGCGSDLAVIGKEKSSRHMS 62
           A +S +T+S      YV+WEE   S D+GRREV Y+LK+++G   DLA+IGKEKSSRHMS
Sbjct: 8   ASSSETTSSQDEQKRYVTWEEKFVSMDKGRREVRYFLKKKNG-ELDLALIGKEKSSRHMS 66

Query: 63  YRYVISNTSFTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGKEVRLLDGESF 122
           Y Y I N+SF    ++L+SRREVV+WL+SIV  S   + +  A R  G +     +  + 
Sbjct: 67  YHYAIRNSSFAP-FFRLKSRREVVNWLDSIVQDSSS-RDANMAVREHGYEP----EIGAL 120

Query: 123 KDVQSGTLGQYTKEFLWLGSSWMSRKKRKHYQSFCRNGVKVSVHDFVYVLAEENKRLIAY 182
           KD Q  +L   +KEF WLG  W  RK+R HYQ+F ++G ++SV+DFV+VLAEENKRL+AY
Sbjct: 121 KDNQLLSLNPCSKEFTWLGLPWTCRKRRNHYQAFRKDGFQISVYDFVFVLAEENKRLVAY 180

Query: 183 LEDMYEDSRGNKMVVVRWFHKIDEVGIFLPHNFNDREIFFSLCLQDLSIECIDGLATVLS 242
           LEDMYE S+GNKMVVVRWFH+IDEVG  LPH+F++RE++FS  LQ LSIECIDGL +VLS
Sbjct: 181 LEDMYEGSKGNKMVVVRWFHRIDEVGFVLPHSFSEREVYFSPYLQRLSIECIDGLTSVLS 240

Query: 243 PQHFEKFMNEATYPQLQPFICDKQFENDDVKPFDITLVKGYWRQEIIRHLFTFTSPKNCS 302
           PQH+ KF N+A + + +P++C K+F  DDVK FDIT ++GYW+QEI++ ++      +  
Sbjct: 241 PQHYAKFRNKARHARPEPYVCSKKFGKDDVKDFDITQMEGYWKQEILKQMYPHVESNSSG 300

Query: 303 SSQQPFDGQRAEKIVNDVVETRPKKRLRQSKDADVCDYTNRKEPMDAACMDL------KI 356
           SS +  DG   E+ ++     RPKK+ R       C   + K+ ++   + L      KI
Sbjct: 301 SSGKSDDGPELEENLHSSSAIRPKKKQR-------CTKVDGKDAVELGSLQLEKLSNCKI 353

Query: 357 STKSSVDGGV-GTLAGVGGAALLSKKEADPSSQYLKVGSHVEVLSQDSGMRGCWYRASVI 415
             K+S    + G++  VG   L + KE + +SQYL VGS+VEVLSQDSG+RGCW+RASVI
Sbjct: 354 DAKTSSGNKLEGSVKLVGTTKLATIKETNEASQYLAVGSNVEVLSQDSGIRGCWFRASVI 413

Query: 416 KKHKDKVKVRYNDVQDAADEVNLLEEWVLASRVAAPDQLGLRVSGRRIVRPSPESHKGRV 475
           K+HKDKVKV+Y+D+QDA DE N LEEW+LASR   PD LGLRV  R  +RP  E  K  +
Sbjct: 414 KRHKDKVKVQYHDIQDAEDEANNLEEWILASRPVVPDDLGLRVEERTKIRPLLE--KRGI 471

Query: 476 SWAIDVGTIVDAWWHDGWWEGIVIQKDSEDKLHVYFPGEKQKSIFSRGDLRHSQEWFGNG 535
           S+  DVG IVDAWWHDGWWEGIV+QK+S+DK HVYFPGEK+ SIF   +LRHS++W GNG
Sbjct: 472 SFVGDVGYIVDAWWHDGWWEGIVVQKESDDKYHVYFPGEKKMSIFGPCNLRHSRDWTGNG 531

Query: 536 WMFIKERSDVVSSILCCLGTKQDEEKS-SDGNSVQATLCAGGQQFNSETEHGESLSDSGD 594
           W+ ++ER D+V+  L  L  KQ   KS  D  S  A++  G Q   ++   G     S  
Sbjct: 532 WVKVRERPDIVTCKLSSLKAKQSSCKSEEDSKSTVASIGDGIQSKQADAYSG----SSER 587

Query: 595 DKIKNSNPVLDLAKDDLLAQLKWKSSRKRRRGGGSSVHRLHCSDPEGKHTRAVVGSGFCE 654
           DK++ +  V DL KD L  QL+WKSSRKR R  G+S  +   +D   K +   + S   +
Sbjct: 588 DKLRKNEEVPDLVKDVLSLQLRWKSSRKRNR-SGTSQQKQQSNDIHRKLSPKFLQSDATD 646

Query: 655 RFLFPASIKVD-DNCKYM-RGSLFKSSVVSPLTSLVMSR 691
            F+ PAS+KVD D+ KY    S+F SSVV  LT++VM R
Sbjct: 647 SFVVPASLKVDHDDYKYQGDPSIFGSSVVPSLTNMVMCR 685

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838619|ref|XP_002887191.1| hypothetical protein ARALYDRAFT_475982 [Arabidopsis lyrata subsp. lyrata] gi|297333032|gb|EFH63450.1| hypothetical protein ARALYDRAFT_475982 [Arabidopsis lyrata subsp. lyrata]

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 313/687 (45%), Positives = 409/687 (59%), Gaps = 44/687 (6%)

Query: 10  ASSSTASCYVSWEEVNASSDRGRREVHYYLKRRDGCGSDLAVIGKEK-SSRHMSYRYVIS 68
           A SS    Y  W E++  + +G+ EVHYYL+R+DG  +DLAVIG+ K SS+ MS+RY + 
Sbjct: 2   AWSSETPSYCGWNELHVKNTKGKMEVHYYLERKDGI-ADLAVIGRLKNSSKRMSFRYALK 60

Query: 69  NTSFTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGKEVRLLDGESFKDVQSG 128
                + L KL S+ +V +WL+SIVSG  +   +      +  K+   L+  +F + +  
Sbjct: 61  KNR--SVLKKLNSKDDVANWLDSIVSGV-MPHVADVPATVMTEKDAGGLNMSTFMNGKFK 117

Query: 129 TLGQYTKEFLWLGSSWMSRKKRKHYQSFCRNGVKVSVHDFVYVLAEENKRLIAYLEDMYE 188
              Q TK F W+GSSW  RK+RKHYQSF RNGV++SV+DFVYVLAE+NKRL+AYLED+YE
Sbjct: 118 EPIQQTKTFSWMGSSWTCRKRRKHYQSFLRNGVRISVNDFVYVLAEQNKRLVAYLEDLYE 177

Query: 189 DSRGNKMVVVRWFHKIDEVGIFLPHNFNDREIFFSLCLQDLSIECIDGLATVLSPQHFEK 248
           DS+G KMVVVRWFHK +EVG  LP + NDREIFFSL  QD+SIECID LATVLSPQH+EK
Sbjct: 178 DSKGKKMVVVRWFHKTEEVGSVLPDDINDREIFFSLYRQDISIECIDYLATVLSPQHYEK 237

Query: 249 FMNEATYPQLQPFICDKQFENDDVKPFDITLVKGYWRQEIIRHLFTFTSPKNCSSSQQP- 307
           F+    + Q   F C K + +D +KP+DIT ++GYW+QE++R+L   +  K+   +Q P 
Sbjct: 238 FLKVPMHVQPVAFFCQKLYGDDGIKPYDITQLEGYWKQEMLRYL-NVSVLKSGEGAQAPG 296

Query: 308 FDGQRAEKIVNDVVETRPKKRLRQSKDADVCDYTNRKEPMDAACMDLKISTKSSVDGGVG 367
            D      +V  V        +R  K            P   +  D+K   KSS D  +G
Sbjct: 297 TDPGLGAPLVGCV-------GIRSRKRRRPSPVGTLNLP---SAGDIKGDCKSSPDSVLG 346

Query: 368 TLAGVGGAALLSKKEADPSSQYLKVGSHVEVLSQDSGMRGCWYRASVIKKHKDKVKVRYN 427
                   A + K   D SS ++K GS VEVLS+DSG+RGCW++A ++KKHKDKVKV+Y 
Sbjct: 347 -----ASDASMCKGAEDGSSHHIKKGSLVEVLSEDSGIRGCWFKALILKKHKDKVKVQYQ 401

Query: 428 DVQDAADEVNLLEEWVLASRVA-APDQLGLRVSGRRIVRPSPESHKGRVSWAIDVGTIVD 486
           D+QDA DE    EEW+L SRVA   D +GLR+ GR++VRP  +  K      I VG  VD
Sbjct: 402 DIQDADDESKKQEEWILTSRVAGGDDPVGLRIKGRKVVRPMLKPGKENDVCVIGVGMPVD 461

Query: 487 AWWHDGWWEGIVIQKDSEDKLHVYFPGEKQKSIFSRGDLRHSQEWFGNGWMFIKERSDVV 546
            WW DGWWEGIV+QK SE+K  VY PGEK+ + F R DLR S+EW  + W+ I  RSD+V
Sbjct: 462 VWWCDGWWEGIVVQKVSEEKFEVYLPGEKKMAAFHRSDLRQSREWLDDEWLNISSRSDIV 521

Query: 547 SSILCCLGTKQDEEKSSDGNSVQATLCAGGQQFNSETEHGESLSDSGDDKIKNSNPVLDL 606
           SS+L  L  K++ E   D       +C G      E +   SL  +   K     P+ DL
Sbjct: 522 SSVL-SLMKKEEAEVKQDEKPSDVGVCNGVMSAKGEAKRTISLPVATTKKSLPKRPIPDL 580

Query: 607 AKDDLL-AQLKW-KSSRKRRRGGGSSVHRLHCSDPEGKHTRAVVGSGFCERFLFPASIKV 664
            KD L+ + LKW KSSRKR R      H     DP   +  +   S  CE          
Sbjct: 581 LKDVLVTSDLKWKKSSRKRNRVVSCCPH-----DPSLNNGFSSERSLDCE---------- 625

Query: 665 DDNCKYMRGSLFKSSVVSPLTSLVMSR 691
             NCK+M G  F SSV  PLT L+MSR
Sbjct: 626 --NCKFM-GDDFGSSVGQPLTGLLMSR 649

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	691
TAIR|locus:2026874	648	AT1G68580 [Arabidopsis thalian	0.826	0.881	0.455	2e-127
TAIR|locus:2162117	663	AT5G55600 [Arabidopsis thalian	0.726	0.757	0.330	3.2e-65
TAIR|locus:2203018	517	AT1G09320 [Arabidopsis thalian	0.274	0.367	0.305	7.5e-11
TAIR|locus:2130878	2037	G2484-1 "G2484-1 protein" [Ara	0.221	0.075	0.307	2.2e-10
TAIR|locus:2200146	604	DUF2 "DOMAIN OF UNKNOWN FUNCTI	0.218	0.25	0.269	1.8e-06
TAIR|locus:2197985	695	AT1G26540 [Arabidopsis thalian	0.186	0.185	0.281	9.6e-06

TAIR|locus:2026874 AT1G68580 [Arabidopsis thaliana (taxid:3702)]

 Score = 1251 (445.4 bits), Expect = 2.0e-127, P = 2.0e-127
 Identities = 271/595 (45%), Positives = 363/595 (61%)

Query:    11 SSSTASCYVSWEEVNASSDRGRREVHYYLKRRDGCGSDLAVIGKEKSSRHMSYRYVISNT 70
             SS T S Y  W E +  + + + EVHYYL+R+DG  +DLAVIG+ K+S+ MS+RY +   
Sbjct:     4 SSETPS-YCGWNERHVKNTKEKMEVHYYLERKDGI-ADLAVIGRLKNSKRMSFRYALKKN 61

Query:    71 SFTTSLYKLRSRREVVDWLNSIVSGSPVLKSSQFAGRFLGGKEVRLLDGESFKDVQSGTL 130
                + L KL S+ +V  WL+SIVSG  +   +      +  K+    +  +F + +    
Sbjct:    62 R--SVLKKLNSKDDVALWLDSIVSGE-IPHVADVPATVMTEKDAGGFNMSTFMNRKFQEP 118

Query:   131 GQYTKEFLWLGSSWMSRKKRKHYQSFCRNGVKVSVHDFVYVLAEENKRLIAYLEDMYEDS 190
              Q  K F W+G SW  RK+RKHYQS+ RNGV++SV+DFVYVLAE++KRL+AY+ED+YEDS
Sbjct:   119 IQQIKTFSWMGFSWTCRKRRKHYQSYLRNGVRISVNDFVYVLAEQHKRLVAYIEDLYEDS 178

Query:   191 RGNKMVVVRWFHKIDEVGIFLPHNFNDREIFFSLCLQDLSIECIDGLATVLSPQHFEKFM 250
             +G KMVVVRWFHK +EVG  L  + NDREIFFSL  QD+SIECID LATVLSPQH+EKF+
Sbjct:   179 KGKKMVVVRWFHKTEEVGSVLSDDDNDREIFFSLNRQDISIECIDYLATVLSPQHYEKFL 238

Query:   251 NEATYPQLQPFICDKQFENDDVKPFDITLVKGYWRQEIIRHLFTFTSPKNCSSSQQPFDG 310
                 + Q   F C K + +D +KP+DIT ++GYWRQE++R+L   +  K+   +Q P   
Sbjct:   239 KVPMHVQTVAFFCQKLYGDDGLKPYDITQLEGYWRQEMLRYL-NVSILKSFEGAQAPGTD 297

Query:   311 QRAEKIVNDVVETRPKKRLRQSKDADV-CDYTNRKEPMDAACMDLKISTKSSXXXXXXXX 369
                +  +   V  R +KR R S    +   Y            D+K   KSS        
Sbjct:   298 PGLKAPLVGCVGIRSRKRRRPSPVGTLNVSYAG----------DMKGDCKSSPDSVLAVT 347

Query:   370 XXXXXXXXXSKKEADPSSQYLKVGSHVEVLSQDSGMRGCWYRASVIKKHKDKVKVRYNDV 429
                       K + D SS ++K GS +EVLS+DSG+RGCW++A V+KKHKDKVKV+Y D+
Sbjct:   348 DASIF-----KGDEDGSSHHIKKGSLIEVLSEDSGIRGCWFKALVLKKHKDKVKVQYQDI 402

Query:   430 QDAADEVNLLEEWVLASRVAAPDQLG-LRVSGRRIVRPSPESHKGRVSWAIDVGTIVDAW 488
             QDA DE   LEEW+L SRVAA D LG LR+ GR++VRP  +  K      I VG  VD W
Sbjct:   403 QDADDESKKLEEWILTSRVAAGDHLGDLRIKGRKVVRPMLKPSKENDVCVIGVGMPVDVW 462

Query:   489 WHDGWWEGIVIQKDSEDKLHVYFPGEKQKSIFSRGDLRHSQEWFGNGWMFIKERSDVVSS 548
             W DGWWEGIV+Q+ SE+K  VY PGEK+ S F R DLR S+EW  + W+ I+ RSD+VSS
Sbjct:   463 WCDGWWEGIVVQEVSEEKFEVYLPGEKKMSAFHRNDLRQSREWLDDEWLNIRSRSDIVSS 522

Query:   549 ILCCLGTKQDEEKSSDGNSVQATLCAGGQQFNSETEHGESLSDSGDDKIKNSNPV 603
             +L  L  K++ E   D  S    +C G     +E +   SL  +   K     P+
Sbjct:   523 VLS-LTKKKEMEVKHDEKSSDVGVCNGRMSPKTEAKRTISLPVATTKKSLPKRPI 576

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

GO:0006333 "chromatin assembly or disassembly" evidence=RCA

TAIR|locus:2162117 AT5G55600 [Arabidopsis thaliana (taxid:3702)]

 Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
 Identities = 186/563 (33%), Positives = 288/563 (51%)

Query:    18 YVSWEEVNASSDRGRREVHYYLKRRDG------CGSDLAVIGKEKSSRHMSYRYVISNTS 71
             +V W+E   S +RG R VHY+LK   G       G++ +V            R      S
Sbjct:     8 FVEWKEHFVSQERGNRVVHYFLKDSAGESILAVIGTERSVRHMFYVVSEEFVRIHGPENS 67

Query:    72 FTTSLYKLRSRREVVDWLNSIVSGSPVL----KSSQF-AGRFLGGKEVRLLDGESFKDVQ 126
               +  +K RSRREVVDWL S++S         KS +  +G   G  E    +G + +  Q
Sbjct:    68 IHSG-FKWRSRREVVDWLTSMLSKQSTQGNWSKSPKCESGESNGSPEFPS-NGFTAQRAQ 125

Query:   127 SG-------TLGQYTKEFLWLGSSWMSRKKRKHYQSFCRNGVKVSVHDFVYVLAEENKRL 179
             +         L  ++ E +W G+ WM  K+ KHY SFCRNG  + V  FV+VL++   R 
Sbjct:   126 ASEEVRLPINLIIHSWEIMWSGAPWMCGKQLKHYPSFCRNGTTIGVQSFVFVLSKGEDRY 185

Query:   180 IAYLEDMYEDSRGNKMVVVRWFHKIDEV-GIFLPHNFNDREIFFSLCLQDLSIECIDGLA 238
             +AYLEDMYED RG K V VRWFH   EV G     N N +E+F +   Q +S EC+DG A
Sbjct:   186 VAYLEDMYEDKRGLKKVKVRWFHYTKEVKGAVALKNPNPKEVFITPHSQVISAECVDGPA 245

Query:   239 TVLSPQHFEKFMNEATYPQ---LQPFICDKQFENDDVKPFDITLVKGYWRQEIIRHLFTF 295
             TVL+ +H+E+ +  A++P     +  +C +Q  N  VKPFD++ ++GY  Q I+  L + 
Sbjct:   246 TVLTREHYEECV--ASFPNSLLARVHMCYRQLRNSKVKPFDLSKLRGYLDQPIMSCLSSM 303

Query:   296 TS-PKNCSSS-QQPFDGQRAEKIVNDVVETRPKKRLRQSKDADVCDYTNRKEPMDAACMD 353
              + P +C+ + ++  +    E ++    E   KKR R   D  +  Y       +++C  
Sbjct:   304 EAGPVDCAMNIEEDEEWSEGENVMVGA-ERSMKKRARIMSDHLLTTY-------ESSCKR 355

Query:   354 LKISTKSSXXXXXXXXXXXXXXXXXSKKEADPS-SQYLKVGSHVEVLSQDSGMRGCWYRA 412
             LK++                     +  +  P  +  +K  + +E L QDSG+RGCW+R 
Sbjct:   356 LKLNASGKRFPSP------------TNVQKHPCYNGVVKTDAKIEFLCQDSGIRGCWFRC 403

Query:   413 SVIKKHKDKVKVRYNDVQDAADEVNLLEEWVLASRVAAPDQLGLRVSGRRIVRPSPESHK 472
             +V+   + +VK++Y+D++D  D    LEEWV A + A PD+LG+R+S R  +RP+P   K
Sbjct:   404 TVLDVSRKQVKLQYDDIEDE-DGYGNLEEWVPAFKSAMPDKLGIRLSNRPTIRPAPRDVK 462

Query:   473 GR-----VSWAIDVGTIVDAWWHDGWWEGIVIQK-DSEDKLHVYFPGEKQKSIFSRGDLR 526
                    +  A+D     D WW +G    I   K D+ED L +Y PGE       R D+R
Sbjct:   463 TAYFDLTIGEAVDAWWN-DGWW-EG--VVIATGKPDTED-LKIYIPGENLCLTVLRKDIR 517

Query:   527 HSQEWFGNGWMFIKERSDVVSSI 549
              S++W G+ W+ I  + ++++ +
Sbjct:   518 ISRDWVGDSWVDIDPKPEILAIV 540

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

TAIR|locus:2203018 AT1G09320 [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 7.5e-11, P = 7.5e-11
 Identities = 65/213 (30%), Positives = 91/213 (42%)

Query:   389 YLKVGSHVEVLSQDSGMRGCWYRASVI----KKHKDKVK--VRYNDVQDAADEVNLLEEW 442
             YLK GS VE+ S + G RG WY   VI       KD VK  V Y  +    +    L+E 
Sbjct:    38 YLKPGSAVEISSDEIGFRGSWYMGKVITIPSSSDKDSVKCQVEYTTLFFDKEGTKPLKEV 97

Query:   443 VLASRVAAPDQLGLRVSGRRIVRPSPESHKGRVSWAIDVGTIVDAWWHDGWWEGIVIQKD 502
             V  S++  P              P  E  K +    I VG  VDA+++DGWWEG V +  
Sbjct:    98 VDMSQLRPP------------APPMSEIEKKK---KIVVGEEVDAFYNDGWWEGDVTEVL 142

Query:   503 SEDKLHVYFPGEKQKSIFSRGDLRHSQEWFGNGWMFIKERSDVVS--SILCCLGTKQDEE 560
              + K  V+F   K++  F + +LR  +EW    W    E ++     S    L   +DEE
Sbjct:   143 DDGKFSVFFRSSKEQIRFRKDELRFHREWVDGAWKPPLEETEEEEDESEEDKLDDSEDEE 202

Query:   561 KSSDGNSVQATLCAGGQQFNSETEHGESLSDSG 593
                    ++ T     Q F+S T    S  + G
Sbjct:   203 DILARVDLETTRAIAKQMFSSGTVVEVSSDEEG 235

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009688 "abscisic acid biosynthetic process" evidence=RCA

TAIR|locus:2130878 G2484-1 "G2484-1 protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
 Identities = 52/169 (30%), Positives = 84/169 (49%)

Query:   390 LKVGSHVEVLSQDSGMRGCWYRASVIKKHKDKVKVRYND--VQDAADEVNLLEEWVLASR 447
             +K GS+VEV  ++ G+R  WY A+V+    DK  V ++D  V+   D+   L+EWV    
Sbjct:  1573 IKEGSNVEVFKEEPGLRTAWYSANVLSLEDDKAYVLFSDLSVEQGTDK---LKEWVALK- 1628

Query:   448 VAAPDQLGLRVSGRRIVRPSP-ESHKGRVSWAID-----VGTIVDAWWHDGWWEGIVIQK 501
                 DQ   ++   R V   P E  + R   A+      +G  VD+W HD W EG++ +K
Sbjct:  1629 -GEGDQAP-KIRPARSVTALPYEGTRKRRRAALGDHIWKIGDRVDSWVHDSWLEGVITEK 1686

Query:   502 DSEDK--LHVYFPGEKQKSIFSRGDLRHSQEWFGNGWMFIKERSDVVSS 548
             + +D+  + V+FP E++       +LR S  W    W+      + +SS
Sbjct:  1687 NKKDENTVTVHFPAEEETLTIKAWNLRPSLVWKDGKWIECSSSGETISS 1735

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009506 "plasmodesma" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

TAIR|locus:2200146 DUF2 "DOMAIN OF UNKNOWN FUNCTION 724 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 45/167 (26%), Positives = 76/167 (45%)

Query:   389 YLKVGSHVEVLSQDSGMRGCWYRASVIKKHKDKVKVRYNDVQDAADEVNLLEEWVLASRV 448
             +++    VEV S++  ++G +YRA +     +  K  +N ++     +  L E  LA   
Sbjct:     6 FIRKDDKVEVFSEEEELKGSYYRAIL---EDNPTKSGHNKLK--VRYLTQLNEHRLAPLT 60

Query:   449 AAPDQLGLRVSGRRIVRPSPESHKGRVSWAIDVGTIVDAWWHDGWWEGIVIQKDSEDKLH 508
                DQ        R +RP P          ++ G +VDA+  DGWW G+V++   ++K  
Sbjct:    61 EFVDQ--------RFIRPVPSEDVNDGVVFVE-GLMVDAYLKDGWWTGVVVKTMEDEKFL 111

Query:   509 VYFPGEKQKSIFSRGDLRHSQEWFGNGWMFIKERSDVVSSILCCLGT 555
             VYF        F +  LR   +W G  W+   +  ++V S+  C GT
Sbjct:   112 VYFDCPPDIIQFEKKKLRVHLDWTGFKWIR-PDNKELVKSVFSC-GT 156

GO:0003723 "RNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2197985 AT1G26540 [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 9.6e-06, P = 9.6e-06
 Identities = 40/142 (28%), Positives = 65/142 (45%)

Query:   396 VEVLSQDSGMRGCWYRASVIKKHKDKVKVRYNDVQDAADEVNLLEEWVLASRVAAPDQLG 455
             VEV S++ G  G W+RA V+++         N    +  ++ +    +L    ++P  L 
Sbjct:    14 VEVSSEEEGFEGAWFRA-VLEE---------NPGNSSRRKLRVRYSTLLDMDGSSP--LI 61

Query:   456 LRVSGRRIVRPSPESHKGRVSWAIDVGTIVDAWWHDGWWEGIVIQKDSEDKLHVYFPGEK 515
               +  +R +RP P     +    ++ G +VDA   DGWW G+V++K  +D   VYF    
Sbjct:    62 EHIE-QRFIRPVPPEENQQKDVVLEEGLLVDADHKDGWWTGVVVKKMEDDNYLVYFDLPP 120

Query:   516 QKSIFSRGDLRHSQEWFGNGWM 537
                 F R  LR    W G  W+
Sbjct:   121 DIIQFERKQLRTHLIWTGGTWI 142


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.408    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      691       648   0.00095  120 3  11 22  0.40    34
                                                     36  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  633 (67 KB)
  Total size of DFA:  398 KB (2193 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  53.70u 0.11s 53.81t   Elapsed:  00:00:02
  Total cpu time:  53.70u 0.11s 53.81t   Elapsed:  00:00:02
  Start:  Tue May 21 07:53:43 2013   End:  Tue May 21 07:53:45 2013

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	691
cd04721	130	cd04721, BAH_plant_1, BAH, or Bromo Adjacent Homol	1e-57
cd04370	123	cd04370, BAH, BAH, or Bromo Adjacent Homology doma	8e-14
smart00743	59	smart00743, Agenet, Tudor-like domain present in p	3e-11
pfam05641	66	pfam05641, Agenet, Agenet domain	5e-11
pfam01426	120	pfam01426, BAH, BAH domain	2e-10
smart00439	121	smart00439, BAH, Bromo adjacent homology domain	2e-09
cd04713	146	cd04713, BAH_plant_3, BAH, or Bromo Adjacent Homol	2e-06
cd04714	121	cd04714, BAH_BAHCC1, BAH, or Bromo Adjacent Homolo	7e-04
cd04719	128	cd04719, BAH_Orc1p_animal, BAH, or Bromo Adjacent	0.002
cd04715	159	cd04715, BAH_Orc1p_like, BAH, or Bromo Adjacent Ho	0.004

>gnl|CDD|240072 cd04721, BAH_plant_1, BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function

 Score =  190 bits (485), Expect = 1e-57
 Identities = 77/130 (59%), Positives = 98/130 (75%), Gaps = 2/130 (1%)

Query: 156 FCRNGVKVSVHDFVYVLAEENKRLIAYLEDMYEDSRGNKMVVVRWFHKIDEVGIFL-PHN 214
           FCRNGV +SVHDFVYVL+EE  R +AY+ED+YED +G+KMV VRWFH  DEVG  L P +
Sbjct: 1   FCRNGVTISVHDFVYVLSEEEDRYVAYIEDLYEDKKGSKMVKVRWFHTTDEVGAALSPDS 60

Query: 215 FNDREIFFSLCLQDLSIECIDGLATVLSPQHFEKFMNEATYP-QLQPFICDKQFENDDVK 273
            N REIF S  LQ +S+ECIDGLATVL+ +H+EKF +      +LQ + C +Q +N+ VK
Sbjct: 61  VNPREIFLSPNLQVISVECIDGLATVLTREHYEKFQSVPKNSSELQAYFCYRQIDNNKVK 120

Query: 274 PFDITLVKGY 283
           PFDIT ++GY
Sbjct: 121 PFDITQLRGY 130

BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions. Length = 130

>gnl|CDD|239835 cd04370, BAH, BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif)

 Score = 68.2 bits (167), Expect = 8e-14
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 4/118 (3%)

Query: 160 GVKVSVHDFVYVLAEE----NKRLIAYLEDMYEDSRGNKMVVVRWFHKIDEVGIFLPHNF 215
           G+   V D VYV  ++    +   IA +E+++ED+ G+K V VRWF++ +E    L    
Sbjct: 1   GITYEVGDSVYVEPDDSIKSDPPYIARIEELWEDTNGSKQVKVRWFYRPEETPKGLSPFA 60

Query: 216 NDREIFFSLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQLQPFICDKQFENDDVK 273
             RE+F S  L ++ +E I G   VL    FE             F C   ++    +
Sbjct: 61  LRRELFLSDHLDEIPVESIIGKCKVLFVSEFEGLKQRPNKIDTDDFFCRLAYDPTTKE 118

BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions. Length = 123

>gnl|CDD|214798 smart00743, Agenet, Tudor-like domain present in plant sequences

 Score = 58.9 bits (143), Expect = 3e-11
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 479 IDVGTIVDAWWHDGWWEGIVIQKDSEDKLHVYFPG--EKQKSIFSRGDLRHSQEW 531
              G  V+ +  D WWE +V +   + K  V + G  E  +      DLR    W
Sbjct: 3   FKEGDRVEVFSEDSWWEAVVTKVLGDGKYLVEYKGESEPLELTVDWSDLRPHPPW 57

Domain in plant sequences with possible chromatin-associated functions. Length = 59

>gnl|CDD|218672 pfam05641, Agenet, Agenet domain

 Score = 58.5 bits (142), Expect = 5e-11
 Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 17/82 (20%)

Query: 390 LKVGSHVEVLSQDSGMRGCWYRASVIKKH-KDKVKVRYNDVQDAADEVNLLEEWVLASRV 448
              GS VEV S++ G  G W+RA V+K+  +DK KV Y+D+         L E V     
Sbjct: 1   FSKGSEVEVSSEEEGFEGAWFRAKVLKELGEDKYKVEYDDLSLEDGGSAPLNETV----- 55

Query: 449 AAPDQLGLRVSGRRIVRPSPES 470
                        R +RP P  
Sbjct: 56  -----------DLRRIRPVPPP 66

This domain is related to the TUDOR domain pfam00567. The function of the agenet domain is unknown. This family currently only matches one of the two Agenet domains in the FMR proteins. Length = 66

>gnl|CDD|216495 pfam01426, BAH, BAH domain

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 161 VKVSVHDFVYVLAEENKR--LIAYLEDMYEDSRGNKMVVVRWFHKIDEVGIFLPHNFNDR 218
              SV DFV V  ++      +  +E+++ED  G+KMV VRWF++ +E    L   FN  
Sbjct: 1   ETYSVGDFVLVEPDDAGEPPYVGRIEEIFEDKDGSKMVHVRWFYRPEETVHRLGRAFNKD 60

Query: 219 EIFFSLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQLQPFICDKQFENDDVKPFDI 277
           E+F S    D+ +E I G   V+     E         +   F C+  ++ +      +
Sbjct: 61  EVFLSDECDDVPLEDIIGKCNVIIKSDPESLQPRKINGEPDVFFCELLYDPERGSFKKL 119

This domain has been called BAH (Bromo adjacent homology) domain and has also been called ELM1 and BAM (Bromo adjacent motif) domain. The function of this domain is unknown but may be involved in protein-protein interaction. Length = 120

>gnl|CDD|214664 smart00439, BAH, Bromo adjacent homology domain

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 22/130 (16%)

Query: 162 KVSVHDFVYVLAEE-NKRL-IAYLEDMYEDSRGN--KMVVVRWFHKIDEVGIFLPHNFND 217
            +SV DFV V  ++ ++   I  +E+++E  + +  KMV VRWF++ +E  +     F+ 
Sbjct: 1   TISVGDFVLVEPDDADEPYYIGRIEEIFETKKNSESKMVRVRWFYRPEETVLEKAALFDK 60

Query: 218 REIFFSLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQLQP---------FICDKQFE 268
            E+F S     + +  I G   VL          ++ YP L+P         F C+  ++
Sbjct: 61  NEVFLSDEYDTVPLSDIIGKCNVLY---------KSDYPGLRPEGSIGEPDVFFCESAYD 111

Query: 269 NDDVKPFDIT 278
            +      + 
Sbjct: 112 PEKGSFKKLP 121

Length = 121

>gnl|CDD|240064 cd04713, BAH_plant_3, BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 4/82 (4%)

Query: 146 SRKKRKHYQSFCRNGVKVSVHDFVYVLAEEN-KRLIAYLEDMYEDSRGNKMVVVRWFHK- 203
            +KK+ HY SF ++G K  + D V ++ E++ K  IA ++D+Y+   G+  + V+W ++ 
Sbjct: 4   GKKKKCHYTSFEKDGNKYRLEDCVLLVPEDDQKPYIAIIKDIYKQEEGSLKLEVQWLYRP 63

Query: 204 --IDEVGIFLPHNFNDREIFFS 223
             I++         + RE+F+S
Sbjct: 64  EEIEKKKGGNWKAEDPRELFYS 85

BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions. Length = 146

>gnl|CDD|240065 cd04714, BAH_BAHCC1, BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 4/104 (3%)

Query: 163 VSVHDFVYVLAEENKRL--IAYLEDMYEDSRGNKMVVVRWFHKIDEVGIFLPHNFNDREI 220
           + V D V   +     L  +A +E ++ED  GN +V V+W+++ +E       N  ++E+
Sbjct: 4   IRVGDCVLFKSPGRPSLPYVARIESLWEDPEGNMVVRVKWYYRPEETKGGRKPNHGEKEL 63

Query: 221 FFSLCLQDL-SIECIDGLATVLSPQHFEKFMNEATYPQLQPFIC 263
           F S   QD  S++ I+    VL+   +E+       PQ      
Sbjct: 64  FAS-DHQDENSVQTIEHKCYVLTFAEYERLARVKKKPQDGVDFY 106

BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions. Length = 121

>gnl|CDD|240070 cd04719, BAH_Orc1p_animal, BAH, or Bromo Adjacent Homology domain, as present in animal homologs of Saccharomyces cerevisiae Orc1p

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 19/94 (20%)

Query: 163 VSVHDFVYVLAE-ENKRLIAYLEDMYEDSRGN---KMVVVRWFHKIDEVGIFLPHN---- 214
           + V DFV +  E  +   +A +  +YED   +   K  +V+WF +  EV    P N    
Sbjct: 4   IEVGDFVLIEGEDADGPDVARILHLYEDGNEDDDPKRAIVQWFSRPSEV----PKNKRKL 59

Query: 215 ----FNDREIFF---SLCLQDLSIECIDGLATVL 241
                + +E+FF   S C  D+  E I G   V 
Sbjct: 60  LGREPHSQEVFFYSRSSCDNDIDAETIIGKVRVE 93

Orc1 is part of the Yeast Sir1-origin recognition complex. The Orc1p BAH doman functions in epigenetic silencing. In vertebrates, a similar ORC protein complex exists, which has been shown essential for DNA replication in Xenopus laevis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions. Length = 128

>gnl|CDD|240066 cd04715, BAH_Orc1p_like, BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 19/122 (15%)

Query: 136 EFLWLGSSWMSRKKR--KHYQSFCRNGVKVSVHDFVYVLAEENKRLIAYLEDMYEDS--R 191
           EF W        KK+  + Y+SF  +GV+  ++D VYV   +++  I  +  +YE +   
Sbjct: 1   EFKWGVKRGEGGKKKDGQFYRSFTYDGVEYRLYDDVYVHNGDSEPYIGKIIKIYETAIDS 60

Query: 192 GNKMVVVRWFHKIDEVGIFL-----PHNFNDREIFFSLCLQDLSI------ECIDGLATV 240
           G K V V WF +  E+ + L      H  N  E+F + C +   +      E I G   V
Sbjct: 61  GKKKVKVIWFFRPSEIRMELKGEPKRH-IN--EVFLA-CGRGEGLANINLLESIIGKCNV 116

Query: 241 LS 242
           + 
Sbjct: 117 VC 118

Orc1 is part of the Yeast Sir1-origin recognition complex, the Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions. Length = 159

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	691
cd04721	130	BAH_plant_1 BAH, or Bromo Adjacent Homology domain	100.0
cd04719	128	BAH_Orc1p_animal BAH, or Bromo Adjacent Homology d	99.87
cd04713	146	BAH_plant_3 BAH, or Bromo Adjacent Homology domain	99.82
PF05641	68	Agenet: Agenet domain; InterPro: IPR008395 This do	99.73
cd04370	123	BAH BAH, or Bromo Adjacent Homology domain (also c	99.7
PF01426	119	BAH: BAH domain; InterPro: IPR001025 The BAH (brom	99.59
cd04714	121	BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain,	99.56
smart00439	120	BAH Bromo adjacent homology domain.	99.52
cd04717	121	BAH_polybromo BAH, or Bromo Adjacent Homology doma	99.33
smart00743	61	Agenet Tudor-like domain present in plant sequence	99.28
cd04715	159	BAH_Orc1p_like BAH, or Bromo Adjacent Homology dom	99.16
cd04716	122	BAH_plantDCM_I BAH, or Bromo Adjacent Homology dom	99.05
cd04718	148	BAH_plant_2 BAH, or Bromo Adjacent Homology domain	98.85
cd04708	202	BAH_plantDCM_II BAH, or Bromo Adjacent Homology do	98.78
cd04710	135	BAH_fungalPHD BAH, or Bromo Adjacent Homology doma	98.7
cd04760	124	BAH_Dnmt1_I BAH, or Bromo Adjacent Homology domain	98.63
cd04709	164	BAH_MTA BAH, or Bromo Adjacent Homology domain, as	98.63
smart00743	61	Agenet Tudor-like domain present in plant sequence	98.63
cd04712	130	BAH_DCM_I BAH, or Bromo Adjacent Homology domain,	98.49
cd04720	179	BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology do	98.35
KOG1886	464	consensus BAH domain proteins [Transcription]	97.84
smart00333	57	TUDOR Tudor domain. Domain of unknown function pre	97.19
smart00333	57	TUDOR Tudor domain. Domain of unknown function pre	96.67
PF05641	68	Agenet: Agenet domain; InterPro: IPR008395 This do	96.35
PF11717	55	Tudor-knot: RNA binding activity-knot of a chromod	95.96
cd04508	48	TUDOR Tudor domains are found in many eukaryotic o	95.16
PF15057	124	DUF4537: Domain of unknown function (DUF4537)	94.97
cd04711	137	BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domai	94.5
cd04508	48	TUDOR Tudor domains are found in many eukaryotic o	94.11
PF09465	55	LBR_tudor: Lamin-B receptor of TUDOR domain; Inter	93.37
PF12148	85	DUF3590: Protein of unknown function (DUF3590); In	92.46
smart00561	96	MBT Present in Drosophila Scm, l(3)mbt, and verteb	91.8
PF00855	86	PWWP: PWWP domain; InterPro: IPR000313 Upon charac	91.32
PF07039	130	DUF1325: SGF29 tudor-like domain; InterPro: IPR010	90.95
PF06003	264	SMN: Survival motor neuron protein (SMN); InterPro	88.94
cd05162	87	PWWP The PWWP domain, named for a conserved Pro-Tr	88.94
smart00293	63	PWWP domain with conserved PWWP motif. conservatio	86.86
PF09465	55	LBR_tudor: Lamin-B receptor of TUDOR domain; Inter	85.88
cd05834	83	HDGF_related The PWWP domain is an essential part	84.15
PLN00104	450	MYST -like histone acetyltransferase; Provisional	80.52

>cd04721 BAH_plant_1 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function

Probab=100.00  E-value=1.6e-38  Score=297.08  Aligned_cols=128  Identities=59%  Similarity=1.065  Sum_probs=124.3

Q ss_pred             hhcCCeEEEEeeEEEEeeccchhHHHHHHHHhhccCCCeeEEEEEeeeccccceecCCC-CCCceeEeecccccccceee
Q 005537          156 FCRNGVKVSVHDFVYVLAEENKRLIAYLEDMYEDSRGNKMVVVRWFHKIDEVGIFLPHN-FNDREIFFSLCLQDLSIECI  234 (691)
Q Consensus       156 F~RnG~tIsvh~FVyv~aee~~r~vaYlEDmYED~kg~k~V~VRWFh~~~Ev~~~lp~~-~~~rEvF~s~~~Q~is~ECi  234 (691)
                      |||||++|+|+|||||++++++.||||||+||||.+|.|||+||||++.+|+.+.+|+. ++++|||+|++.|+|++|||
T Consensus         1 ~~r~~~~i~vGD~V~v~~~~~~~~va~Ie~i~ed~~g~~~v~v~WF~~p~E~~~~~~~~~~~~~EvFlS~~~d~i~~~~I   80 (130)
T cd04721           1 FCRNGVTISVHDFVYVLSEEEDRYVAYIEDLYEDKKGSKMVKVRWFHTTDEVGAALSPDSVNPREIFLSPNLQVISVECI   80 (130)
T ss_pred             CccCCEEEECCCEEEEeCCCCCcEEEEEEEEEEcCCCCEEEEEEEecCHHHhccccCCCCCCCCeEEEcCCccccchHHe
Confidence            89999999999999999999999999999999999999999999999999999999986 99999999999999999999


Q ss_pred             cccccccChHHHHHHhhhhCC-CCcceeeEEeeecCCCccceeeccccee
Q 005537          235 DGLATVLSPQHFEKFMNEATY-PQLQPFICDKQFENDDVKPFDITLVKGY  283 (691)
Q Consensus       235 dg~AtVLtp~Hyek~~~~a~~-~~~~~~~C~rq~~~~~vKPFdltqL~GY  283 (691)
                      +|.|+|||++||+|+.+..++ +...+|+|.|+++++++||||+++||||
T Consensus        81 ~gk~~Vls~~~y~k~~~~~~~~~~~~~f~C~~~~d~~~~~~fd~~~~~g~  130 (130)
T cd04721          81 DGLATVLTREHYEKFQSVPKNSSELQAYFCYRQIDNNKVKPFDITQLRGY  130 (130)
T ss_pred             eeeeEECCHHHHhhhhccccCccccccEEEEEEecCCCCceeeeeccccC
Confidence            999999999999999998877 5579999999999999999999999999

BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>cd04719 BAH_Orc1p_animal BAH, or Bromo Adjacent Homology domain, as present in animal homologs of Saccharomyces cerevisiae Orc1p

Probab=99.87  E-value=5.6e-23  Score=192.45  Aligned_cols=111  Identities=23%  Similarity=0.330  Sum_probs=98.4

Q ss_pred             eEEEEeeEEEEeecc-chhHHHHHHHHhhccCC---CeeEEEEEeeeccccce----ecCCCCCCceeEeeccc---ccc
Q 005537          161 VKVSVHDFVYVLAEE-NKRLIAYLEDMYEDSRG---NKMVVVRWFHKIDEVGI----FLPHNFNDREIFFSLCL---QDL  229 (691)
Q Consensus       161 ~tIsvh~FVyv~aee-~~r~vaYlEDmYED~kg---~k~V~VRWFh~~~Ev~~----~lp~~~~~rEvF~s~~~---Q~i  229 (691)
                      +||.|+|||+|++++ +++|||+||+||||++|   .++++||||++.+|++.    .+++.++++|||+|.+.   |+|
T Consensus         2 ~~i~vGd~VlI~~~d~~~~yVAkI~~i~e~~~~~~~~~~~~VqWy~R~~Ev~~~~~~~~~~~~~~~EvF~~~~~~~~~~i   81 (128)
T cd04719           2 LTIEVGDFVLIEGEDADGPDVARILHLYEDGNEDDDPKRAIVQWFSRPSEVPKNKRKLLGREPHSQEVFFYSRSSCDNDI   81 (128)
T ss_pred             eEEecCCEEEEECCCCCCCcEeeehhhhccccCCcccceEEEEcccChHHccccchhhccCCCCCcEEEEecCccccCcE
Confidence            799999999999999 99999999999999988   78999999999999975    34457899999999987   599


Q ss_pred             cceeecccccccChHHHHHHhhhhCCCCcceeeEEeeecCCCcc
Q 005537          230 SIECIDGLATVLSPQHFEKFMNEATYPQLQPFICDKQFENDDVK  273 (691)
Q Consensus       230 s~ECidg~AtVLtp~Hyek~~~~a~~~~~~~~~C~rq~~~~~vK  273 (691)
                      +||||+|+++||+-++|+++-...  ......+|.|++.+++++
T Consensus        82 ~~etI~gkc~V~~~~~y~~l~~~~--~~~~~~~F~r~~~~~k~~  123 (128)
T cd04719          82 DAETIIGKVRVEPVEPKTDLPETK--KKTGGPLFVKRYWDTKTF  123 (128)
T ss_pred             eHHHcccEEEEEEcCCccchhhhc--cccCceEEEEEEeccccc
Confidence            999999999999999999776422  246889999999998754

Orc1 is part of the Yeast Sir1-origin recognition complex. The Orc1p BAH doman functions in epigenetic silencing. In vertebrates, a similar ORC protein complex exists, which has been shown essential for DNA replication in Xenopus laevis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>cd04713 BAH_plant_3 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function

Probab=99.82  E-value=1.6e-21  Score=185.77  Aligned_cols=130  Identities=24%  Similarity=0.385  Sum_probs=110.6

Q ss_pred             hhhhhhhhhhhcCCeEEEEeeEEEEeecc-chhHHHHHHHHhhccCCCeeEEEEEeeeccccceecCC---CCCCceeEe
Q 005537          147 RKKRKHYQSFCRNGVKVSVHDFVYVLAEE-NKRLIAYLEDMYEDSRGNKMVVVRWFHKIDEVGIFLPH---NFNDREIFF  222 (691)
Q Consensus       147 ~Kr~kHY~sF~RnG~tIsvh~FVyv~aee-~~r~vaYlEDmYED~kg~k~V~VRWFh~~~Ev~~~lp~---~~~~rEvF~  222 (691)
                      .++++||++|..+|++|.|+|||||.+++ ++-|||.|++|||+..|.+||+|+||.+..|+...-+.   ...++|||+
T Consensus         5 ~~~~~~y~s~~~dg~~y~vgD~Vlv~~~~~~~pyI~~I~~i~~~~~~~~~v~V~WFyRpeEi~~~~~~~~~~~~~~ElF~   84 (146)
T cd04713           5 KKKKCHYTSFEKDGNKYRLEDCVLLVPEDDQKPYIAIIKDIYKQEEGSLKLEVQWLYRPEEIEKKKGGNWKAEDPRELFY   84 (146)
T ss_pred             ccceeeeeeEEECCEEEECCCEEEEeCCCCCCCEEEEEEEEEEcCCCCEEEEEEeeECHHHhccccccccccCCCCeEEE
Confidence            36789999999999999999999999987 67899999999999999999999999999999764432   235899999


Q ss_pred             ecccccccceeecccccccChHHHHHHhhhhCCCCcceeeEEeeecCCCccceeecc
Q 005537          223 SLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQLQPFICDKQFENDDVKPFDITL  279 (691)
Q Consensus       223 s~~~Q~is~ECidg~AtVLtp~Hyek~~~~a~~~~~~~~~C~rq~~~~~vKPFdltq  279 (691)
                      |.+..++++|||.|.++|++-..+.+   ........+|+|.+.+|+.+-++|+||-
T Consensus        85 S~~~d~~~~~~I~gkc~V~~~~~~~~---~~~~~~~~~F~cr~~yD~~~~~~~~~~~  138 (146)
T cd04713          85 SFHRDEVPAESVLHPCKVAFVPKGKQ---IPLRKGHSGFIVRRVYDNVNKKLWKLTD  138 (146)
T ss_pred             eCCCCcCCHHHCcceeEEEECCcccc---CCccCCCCeEEEEEEEcCCCCcEeeccc
Confidence            99999999999999999974332221   1222346899999999999999999984

BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []

Probab=99.73  E-value=3.8e-18  Score=143.19  Aligned_cols=66  Identities=42%  Similarity=0.772  Sum_probs=43.3

Q ss_pred             cCCCCEEEEeecCCCcceeeEEEEEEEecCC-EEEEEeCccccccccCcceEEEEecccccCCccccccccCCcccCCCC
Q 005537          390 LKVGSHVEVLSQDSGMRGCWYRASVIKKHKD-KVKVRYNDVQDAADEVNLLEEWVLASRVAAPDQLGLRVSGRRIVRPSP  468 (691)
Q Consensus       390 FkvGs~VEV~Sde~G~rGsWF~AtVik~~~~-ky~V~Y~dl~ddeDg~~~L~EwV~~srva~PD~lgiR~~gR~~IRP~P  468 (691)
                      |++|++|||+++++||+||||+|+|++..++ +|+|+|+++.+++++..+|.|||+.+                .|||+|
T Consensus         1 F~~G~~VEV~s~e~g~~gaWf~a~V~~~~~~~~~~V~Y~~~~~~~~~~~~l~e~V~~~----------------~iRP~p   64 (68)
T PF05641_consen    1 FKKGDEVEVSSDEDGFRGAWFPATVLKENGDDKYLVEYDDLPDEDGESPPLKEWVDAR----------------RIRPCP   64 (68)
T ss_dssp             --TT-EEEEEE-SBTT--EEEEEEEEEEETT-EEEEEETT-SS--------EEEEEGG----------------GEEE--
T ss_pred             CCCCCEEEEEEcCCCCCcEEEEEEEEEeCCCcEEEEEECCcccccccccccEEEechh----------------eEECcC
Confidence            7999999999999999999999999999877 99999999998733343499999863                599999


Q ss_pred             CCC
Q 005537          469 ESH  471 (691)
Q Consensus       469 P~~  471 (691)
                      |+.
T Consensus        65 P~~   67 (68)
T PF05641_consen   65 PPE   67 (68)
T ss_dssp             ---
T ss_pred             cCC
Confidence            964

The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.

>cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif)

Probab=99.70  E-value=6.7e-18  Score=150.72  Aligned_cols=116  Identities=30%  Similarity=0.505  Sum_probs=105.4

Q ss_pred             CeEEEEeeEEEEeecc----chhHHHHHHHHhhccCCCeeEEEEEeeeccccceecCCCCCCceeEeecccccccceeec
Q 005537          160 GVKVSVHDFVYVLAEE----NKRLIAYLEDMYEDSRGNKMVVVRWFHKIDEVGIFLPHNFNDREIFFSLCLQDLSIECID  235 (691)
Q Consensus       160 G~tIsvh~FVyv~aee----~~r~vaYlEDmYED~kg~k~V~VRWFh~~~Ev~~~lp~~~~~rEvF~s~~~Q~is~ECid  235 (691)
                      |+++.|.|||||.+++    ++.|||+|+.|++++.|.+||+||||.+..|+.....+.+++||||+|.+..+|.+|||.
T Consensus         1 g~~y~vgd~V~v~~~~~~~~~~~~i~~I~~i~~~~~~~~~~~v~wf~rp~e~~~~~~~~~~~~Elf~s~~~~~i~v~~I~   80 (123)
T cd04370           1 GITYEVGDSVYVEPDDSIKSDPPYIARIEELWEDTNGSKQVKVRWFYRPEETPKGLSPFALRRELFLSDHLDEIPVESII   80 (123)
T ss_pred             CCEEecCCEEEEecCCcCCCCCCEEEEEeeeeECCCCCEEEEEEEEEchhHhccccccccccceeEEecCccccCHHHhc
Confidence            7899999999999988    679999999999999999999999999999999888788999999999999999999999


Q ss_pred             ccccccChHHHHHHhhhhCCCCcceeeEEeeecC--CCccce
Q 005537          236 GLATVLSPQHFEKFMNEATYPQLQPFICDKQFEN--DDVKPF  275 (691)
Q Consensus       236 g~AtVLtp~Hyek~~~~a~~~~~~~~~C~rq~~~--~~vKPF  275 (691)
                      |.++||..+.|++............|+|.+.++.  +.+|++
T Consensus        81 gkc~V~~~~~~~~~~~~~~~~~~~~f~~r~~yd~~~~~fk~~  122 (123)
T cd04370          81 GKCKVLFVSEFEGLKQRPNKIDTDDFFCRLAYDPTTKEFKAL  122 (123)
T ss_pred             cccEEEechHhhccccccccCCCCeEEEEEEECcCcceEEeC
Confidence            9999999999998875333445689999999997  577765

BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions.

>PF01426 BAH: BAH domain; InterPro: IPR001025 The BAH (bromo-adjacent homology) family contains proteins such as eukaryotic DNA (cytosine-5) methyltransferases IPR001525 from INTERPRO, the origin recognition complex 1 (Orc1) proteins, as well as several proteins involved in transcriptional regulation

Probab=99.59  E-value=2e-16  Score=141.80  Aligned_cols=107  Identities=33%  Similarity=0.606  Sum_probs=96.8

Q ss_pred             eEEEEeeEEEEeecc--chhHHHHHHHHhhccCCC--eeEEEEEeeeccccceecCCCCCCceeEeecccccccceeecc
Q 005537          161 VKVSVHDFVYVLAEE--NKRLIAYLEDMYEDSRGN--KMVVVRWFHKIDEVGIFLPHNFNDREIFFSLCLQDLSIECIDG  236 (691)
Q Consensus       161 ~tIsvh~FVyv~aee--~~r~vaYlEDmYED~kg~--k~V~VRWFh~~~Ev~~~lp~~~~~rEvF~s~~~Q~is~ECidg  236 (691)
                      .||.|+|||||..++  +..+||.|++||+|.+++  +||+|+||.+.+|+  ...+-.++||||+|.+.+++.++||.|
T Consensus         1 ~~~~vGD~V~v~~~~~~~~~~v~~I~~i~~~~~~~~~~~~~v~Wf~rp~d~--~~~~~~~~~Elf~s~~~~~~~~~~I~g   78 (119)
T PF01426_consen    1 VTYKVGDFVYVKPDDPPEPPYVARIEEIWEDKDGNKEKMVKVRWFYRPEDT--SLGKTFSPRELFLSDHCDDIPVESIRG   78 (119)
T ss_dssp             EEEETTSEEEEECTSTTSEEEEEEEEEEEEETTTSEEEEEEEEEEEEGGGS--TTGGHSCTTEEEEEEEEEEEEGGGEEE
T ss_pred             CEEeCCCEEEEeCCCCCCCCEEEEEEEEEcCCCCCEEEEEEEEEeECcccc--cccccCCCCEEEEECcEeEEehhhEEe
Confidence            489999999999999  899999999999999999  99999999999999  333446779999999999999999999


Q ss_pred             cccccChHHHHHHhhhhCCCCcceeeEEeeecCC
Q 005537          237 LATVLSPQHFEKFMNEATYPQLQPFICDKQFEND  270 (691)
Q Consensus       237 ~AtVLtp~Hyek~~~~a~~~~~~~~~C~rq~~~~  270 (691)
                      .+.|++.++|+........ ....|+|.+.++..
T Consensus        79 kc~V~~~~~~~~~~~~~~~-~~~~F~cr~~yd~~  111 (119)
T PF01426_consen   79 KCNVLHLEDYEQARPYGKE-EPDTFFCRYAYDPQ  111 (119)
T ss_dssp             EEEEEEHHHHTTGCCHCHH-TTTEEEEEEEEETT
T ss_pred             eeEEEECCccccccccccC-CCCEEEEEEEEeCC
Confidence            9999999999888776644 77899999999975

The BAH domain appears to act as a protein-protein interaction module specialised in gene silencing, as suggested for example by its interaction within yeast Orc1p with the silent information regulator Sir1p. The BAH module might therefore play an important role by linking DNA methylation, replication and transcriptional regulation [].; GO: 0003677 DNA binding; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 3SWR_A 3PTA_A 1M4Z_A 1ZBX_A ....

>cd04714 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins

Probab=99.56  E-value=1.1e-15  Score=141.50  Aligned_cols=111  Identities=22%  Similarity=0.351  Sum_probs=96.2

Q ss_pred             CeEEEEeeEEEEeeccc--hhHHHHHHHHhhccCCCeeEEEEEeeeccccceecCCCCCCceeEeecccccccceeeccc
Q 005537          160 GVKVSVHDFVYVLAEEN--KRLIAYLEDMYEDSRGNKMVVVRWFHKIDEVGIFLPHNFNDREIFFSLCLQDLSIECIDGL  237 (691)
Q Consensus       160 G~tIsvh~FVyv~aee~--~r~vaYlEDmYED~kg~k~V~VRWFh~~~Ev~~~lp~~~~~rEvF~s~~~Q~is~ECidg~  237 (691)
                      |.+|.|+|||||.+++.  .-|||.|+.|+||++|+++|+|+||.+..|..+.-.+.+.++|||+|.+.+++.++||.|.
T Consensus         1 ~~~~~vGD~V~v~~~~~~~~pyIgrI~~i~e~~~g~~~~~v~WfyrPeEt~~~~~~~~~~~EvF~S~~~d~~~~~~I~gk   80 (121)
T cd04714           1 KEIIRVGDCVLFKSPGRPSLPYVARIESLWEDPEGNMVVRVKWYYRPEETKGGRKPNHGEKELFASDHQDENSVQTIEHK   80 (121)
T ss_pred             CCEEEcCCEEEEeCCCCCCCCEEEEEEEEEEcCCCCEEEEEEEEEcHHHccCcccccCCCCceEecCCcccccHHHhCcc
Confidence            56899999999999874  6899999999999999999999999999998765556799999999999999999999999


Q ss_pred             ccccChHHHHHHhhhhC--CCCcceeeEEeeecCC
Q 005537          238 ATVLSPQHFEKFMNEAT--YPQLQPFICDKQFEND  270 (691)
Q Consensus       238 AtVLtp~Hyek~~~~a~--~~~~~~~~C~rq~~~~  270 (691)
                      |+||+...|.++....+  ..-..+++|---++-+
T Consensus        81 c~V~~~~ey~~~~~~~~~~~~~~d~~~Ce~~yn~~  115 (121)
T cd04714          81 CYVLTFAEYERLARVKKKPQDGVDFYYCAGTYNPD  115 (121)
T ss_pred             cEEEehhHheecccccCCCCcCCCEEEEeccCCCC
Confidence            99999999999887532  2334777886655543

BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>smart00439 BAH Bromo adjacent homology domain

Probab=99.52  E-value=4e-15  Score=133.36  Aligned_cols=109  Identities=26%  Similarity=0.481  Sum_probs=97.0

Q ss_pred             EEEEeeEEEEeecc--chhHHHHHHHHhhccCCC-eeEEEEEeeeccccceecCCCCCCceeEeecccccccceeecccc
Q 005537          162 KVSVHDFVYVLAEE--NKRLIAYLEDMYEDSRGN-KMVVVRWFHKIDEVGIFLPHNFNDREIFFSLCLQDLSIECIDGLA  238 (691)
Q Consensus       162 tIsvh~FVyv~aee--~~r~vaYlEDmYED~kg~-k~V~VRWFh~~~Ev~~~lp~~~~~rEvF~s~~~Q~is~ECidg~A  238 (691)
                      +|.|.|||||.++.  ++.+||.|++||++.+|+ +|++|+||-+..|+.....+.++++|||+|.+..+|.+|||.|.+
T Consensus         1 ~~~vgd~V~v~~~~~~~~~~i~~I~~i~~~~~~~~~~~~v~Wf~rp~e~~~~~~~~~~~~Elf~s~~~~~i~~~~I~~kc   80 (120)
T smart00439        1 TIRVGDFVLVEPDDADEPYYIGRIEEIFETKKNSEKMVRVRWFYRPEETVLEKAALFDKNEVFLSDEYDTVPLSDIIGKC   80 (120)
T ss_pred             CcccCCEEEEeCCCCCCCCEEEEEEEEEECCCCCEEEEEEEEEEChhhccccccccCCCcceEEEccCccCChHHeeeEE
Confidence            57899999999997  679999999999999999 999999999999998877777899999999999999999999999


Q ss_pred             cccChHHHHHHhhhhCCCCcceeeEEeeecCC
Q 005537          239 TVLSPQHFEKFMNEATYPQLQPFICDKQFEND  270 (691)
Q Consensus       239 tVLtp~Hyek~~~~a~~~~~~~~~C~rq~~~~  270 (691)
                      +||+.+.|++............|+|.+.|+..
T Consensus        81 ~V~~~~~~~~~~~~~~~~~~~~f~cr~~yd~~  112 (120)
T smart00439       81 NVLSKSDYPGLRPEGKIGEPDVFFCESLYDPE  112 (120)
T ss_pred             EEEEcchhcccccccCCCCCCeEEEEEEEccc
Confidence            99999999886543222246899999999974

>cd04717 BAH_polybromo BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2

Probab=99.33  E-value=6e-13  Score=122.50  Aligned_cols=110  Identities=24%  Similarity=0.421  Sum_probs=96.2

Q ss_pred             CeEEEEeeEEEEeecc--chhHHHHHHHHhhccCCCeeEEEEEeeeccccceecCCCCCCceeEeecccccccceeeccc
Q 005537          160 GVKVSVHDFVYVLAEE--NKRLIAYLEDMYEDSRGNKMVVVRWFHKIDEVGIFLPHNFNDREIFFSLCLQDLSIECIDGL  237 (691)
Q Consensus       160 G~tIsvh~FVyv~aee--~~r~vaYlEDmYED~kg~k~V~VRWFh~~~Ev~~~lp~~~~~rEvF~s~~~Q~is~ECidg~  237 (691)
                      |+.+.|.|+|||.+.+  ...|||-|+.|++|..|+++|.|+||-+.+|+-..-...+.++|||+|+..-.+.++||-|.
T Consensus         1 g~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~~~~Wf~rP~et~~~~~~~~~~~Evfls~~~d~~~~~~I~~k   80 (121)
T cd04717           1 GLQYRVGDCVYVANPEDPSKPIIFRIERLWKDEDGEKFFFGCWFYRPEETFHEPTRKFYKNEVFKSPLYETVPVEEIVGK   80 (121)
T ss_pred             CCEEECCCEEEEeCCCCCCCCEEEEEeEEEECCCCCEEEEEEEEeChHHccCCCccccccCceEEcCccccccHHHhcCe
Confidence            7789999999999988  77899999999999999999999999999999553335789999999999999999999999


Q ss_pred             ccccChHHHHHHhhhhCCCCcceeeEEeeecCC
Q 005537          238 ATVLSPQHFEKFMNEATYPQLQPFICDKQFEND  270 (691)
Q Consensus       238 AtVLtp~Hyek~~~~a~~~~~~~~~C~rq~~~~  270 (691)
                      ++||++..|.+..-. ......+|+|...++..
T Consensus        81 c~Vl~~~~y~~~~p~-~~~~~dvy~ce~~y~~~  112 (121)
T cd04717          81 CAVMDVKDYIKGRPT-EISEEDVYVCESRYNES  112 (121)
T ss_pred             eEEEehHHHhcCCCC-CCCCCCEEEEeEEECcc
Confidence            999999999877532 12234899999999953

The human polybromo protein (BAF180) is a component of the SWI/SNF chromatin-remodeling complex PBAF. It is thought that polybromo participates in transcriptional regulation. Saccharomyces cerevisiae RSC1 and RSC2 are part of the 15-subunit nucleosome remodeling RSC complex. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>smart00743 Agenet Tudor-like domain present in plant sequences

Probab=99.28  E-value=6.8e-12  Score=102.31  Aligned_cols=56  Identities=27%  Similarity=0.519  Sum_probs=53.3

Q ss_pred             cCCCCCEEEEee--CCCeEEEEEEEEcCCceEEEEeCC--CCeEEEEecCCCcceeeecC
Q 005537          478 AIDVGTIVDAWW--HDGWWEGIVIQKDSEDKLHVYFPG--EKQKSIFSRGDLRHSQEWFG  533 (691)
Q Consensus       478 ~~~vGd~VDAw~--nDGWWEGvV~~v~~~~ky~V~FpG--ege~l~f~~sdLRps~dW~d  533 (691)
                      .|++|+.|||++  +++||+|+|++++++++|.|+|++  ++...+++.++|||+++|.+
T Consensus         2 ~~~~G~~Ve~~~~~~~~W~~a~V~~~~~~~~~~V~~~~~~~~~~e~v~~~~LRp~~~w~~   61 (61)
T smart00743        2 DFKKGDRVEVFSKEEDSWWEAVVTKVLGDGKYLVRYLTESEPLKETVDWSDLRPHPPWVD   61 (61)
T ss_pred             CcCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCcccEEEEeHHHcccCCCCCC
Confidence            478999999999  999999999999998899999999  99999999999999999975

Domain in plant sequences with possible chromatin-associated functions.

>cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins

Probab=99.16  E-value=7.5e-12  Score=121.66  Aligned_cols=108  Identities=26%  Similarity=0.333  Sum_probs=91.5

Q ss_pred             EecccchhhhhhhhhhhhhcCCeEEEEeeEEEEeeccchhHHHHHHHHhhccC--CCeeEEEEEeeeccccceecC--CC
Q 005537          139 WLGSSWMSRKKRKHYQSFCRNGVKVSVHDFVYVLAEENKRLIAYLEDMYEDSR--GNKMVVVRWFHKIDEVGIFLP--HN  214 (691)
Q Consensus       139 W~G~~w~c~Kr~kHY~sF~RnG~tIsvh~FVyv~aee~~r~vaYlEDmYED~k--g~k~V~VRWFh~~~Ev~~~lp--~~  214 (691)
                      |.|-+=. .|-.+||++|..+|.++.|.|.|||-++..+-|||-|+.|||+..  |.+|++|+||-+..|.-....  +.
T Consensus         7 ~~g~~~~-~~~~~~Y~s~~~~g~~y~lGD~Vlv~s~~~~~yIgkI~~iwe~~~~~g~~~~~v~WfyRp~E~~~~~~~~~~   85 (159)
T cd04715           7 KRGEGGK-KKDGQFYRSFTYDGVEYRLYDDVYVHNGDSEPYIGKIIKIYETAIDSGKKKVKVIWFFRPSEIRMELKGEPK   85 (159)
T ss_pred             ecccccc-cCCceEEEEEEECCEEEeCCCEEEEeCCCCCCEEEEEEEEEEcCCcCCceEEEEEeeeCHHHhccccccCcc
Confidence            4554431 133469999999999999999999999999999999999999875  999999999999999865554  46


Q ss_pred             CCCceeEeeccc-----ccccceeecccccccChHHHH
Q 005537          215 FNDREIFFSLCL-----QDLSIECIDGLATVLSPQHFE  247 (691)
Q Consensus       215 ~~~rEvF~s~~~-----Q~is~ECidg~AtVLtp~Hye  247 (691)
                      +.+.|||+|.+-     ++.++|||-|.+.||+=..|.
T Consensus        86 ~~~nEvFlS~~~d~~~~~~n~l~sI~gKC~Vl~~~ey~  123 (159)
T cd04715          86 RHINEVFLACGRGEGLANINLLESIIGKCNVVCISEDF  123 (159)
T ss_pred             cCCCcEEEecCcCccccccCcHHHccceeEEEEehHhh
Confidence            889999999863     778999999999999866655

Orc1 is part of the Yeast Sir1-origin recognition complex, the Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>cd04716 BAH_plantDCM_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants

Probab=99.05  E-value=5.3e-11  Score=111.19  Aligned_cols=110  Identities=16%  Similarity=0.348  Sum_probs=92.0

Q ss_pred             CeEEEEeeEEEEeecc-chhHHHHHHHHhhccCCCeeEEEEEeeecccccee-cCCCCCCceeEeecccccccceeeccc
Q 005537          160 GVKVSVHDFVYVLAEE-NKRLIAYLEDMYEDSRGNKMVVVRWFHKIDEVGIF-LPHNFNDREIFFSLCLQDLSIECIDGL  237 (691)
Q Consensus       160 G~tIsvh~FVyv~aee-~~r~vaYlEDmYED~kg~k~V~VRWFh~~~Ev~~~-lp~~~~~rEvF~s~~~Q~is~ECidg~  237 (691)
                      |+.+.+.|+|||.+++ +.-|||-|+.|+|++.|+.+++||||-+..|.-+. .++...+||||+|.+.-+++++||-|.
T Consensus         1 g~~~~lgD~V~v~~~~~~~~yi~rI~~i~e~~~g~~~~~v~WyyRpeet~~~r~~~~~~~rEvFlS~~~D~~pl~~I~~K   80 (122)
T cd04716           1 GITYNLGDDAYVQGGEGEEPFICKITEFFEGTDGKTYFTAQWFYRAEDTVIERQATNHDKKRVFYSEIKNDNPLDCLISK   80 (122)
T ss_pred             CcEEEcCCEEEEECCCCCCCEEEEEEEEEEcCCCceEEEEEEEEcHHHhccccccccCCCceEEEecccCccchhheeee
Confidence            7889999999999998 67899999999999999999999999999886554 345667999999999999999999999


Q ss_pred             ccccChHHHHHHhhhhCCCCcceeeEEeeecC
Q 005537          238 ATVLSPQHFEKFMNEATYPQLQPFICDKQFEN  269 (691)
Q Consensus       238 AtVLtp~Hyek~~~~a~~~~~~~~~C~rq~~~  269 (691)
                      ++||+=.-++.-...+.......|+|..-++-
T Consensus        81 c~V~~~~~~~~~~~~~~~~~~~df~c~~~Y~~  112 (122)
T cd04716          81 VKILQVPPNVGTKRKKPNSEKCDYYYDMEYCV  112 (122)
T ss_pred             eEEEEeCCCCCcccccccCCCceEEEeeEecc
Confidence            99998444443333345555788999877653

DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function

Probab=98.85  E-value=3.5e-09  Score=101.99  Aligned_cols=89  Identities=21%  Similarity=0.456  Sum_probs=79.8

Q ss_pred             chhHHHHHHHHhhccCCCeeEEEEEeeeccccceecCCCCCCceeEeecccccccceeecccccccChHHHHHHhhhhCC
Q 005537          176 NKRLIAYLEDMYEDSRGNKMVVVRWFHKIDEVGIFLPHNFNDREIFFSLCLQDLSIECIDGLATVLSPQHFEKFMNEATY  255 (691)
Q Consensus       176 ~~r~vaYlEDmYED~kg~k~V~VRWFh~~~Ev~~~lp~~~~~rEvF~s~~~Q~is~ECidg~AtVLtp~Hyek~~~~a~~  255 (691)
                      .+-|||+||-|.+|. |+.+|++|||-+..|.-+---+-+..||||.|.+..+++++||-|-+.|++++.|.|    +..
T Consensus        51 ~~~~vArIekiW~~~-G~~~~~grWy~rPEET~~gr~~~~~~kEvFlS~~~d~~~~~~I~gkC~V~~~keY~k----~e~  125 (148)
T cd04718          51 GDLWLARIEKLWEEN-GTYWYAARWYTLPEETHMGRQPHNLRRELYLTNDFADIEMECILRHCSVKCPKEFRD----ASN  125 (148)
T ss_pred             CchHHHHHHHHHhcc-CceEEEEEEEeCchhccCccccccccceeeeccccccccHHHHhcccEEcCHHHccc----ccC
Confidence            568999999999998 999999999999999877766678999999999999999999999999999999986    444


Q ss_pred             CCcceeeEEeeecC
Q 005537          256 PQLQPFICDKQFEN  269 (691)
Q Consensus       256 ~~~~~~~C~rq~~~  269 (691)
                      .-..+|+|---++.
T Consensus       126 ~g~Dvy~Ce~~Yd~  139 (148)
T cd04718         126 DGDDVFLCEYEYDV  139 (148)
T ss_pred             CCCceEEEEEEEhh
Confidence            45688999887775

BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants

Probab=98.78  E-value=3e-09  Score=107.09  Aligned_cols=113  Identities=19%  Similarity=0.308  Sum_probs=95.8

Q ss_pred             hhcCCeEEEEeeEEEEeec-------------------cchhHHHHHHHHhhccCCC------eeEEEEEeeecccccee
Q 005537          156 FCRNGVKVSVHDFVYVLAE-------------------ENKRLIAYLEDMYEDSRGN------KMVVVRWFHKIDEVGIF  210 (691)
Q Consensus       156 F~RnG~tIsvh~FVyv~ae-------------------e~~r~vaYlEDmYED~kg~------k~V~VRWFh~~~Ev~~~  210 (691)
                      |.-+||+..|||||||.++                   -+-=+|+.|=++++-+.++      -+|+||||-+..+.++.
T Consensus         1 f~~~Gv~Y~vgD~VYv~p~~f~~~~~~~~~~~~G~N~~~~p~~I~qI~ei~~~k~~~~~~~~~~~vrVrwFYRPEdt~~~   80 (202)
T cd04708           1 FVYDGVTYSVGDFLYVSPDAFAEEERERATFKAGRNVGLKAFVVCQVLEIVVEKESKQADVASTQVKVRRFYRPEDVSPE   80 (202)
T ss_pred             CcCCCEEEecCCeEEECcccccccccccccccccccCCCCCcEEEEEEEEEecccCCCCCCcceEEEEEEEechhhcCcc
Confidence            7789999999999999999                   1234678888899877764      48999999999998665


Q ss_pred             cCCCCCCceeEeecccccccceeecccccccChHHHHHHhhhhCCCCcceeeEEeeecCC
Q 005537          211 LPHNFNDREIFFSLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQLQPFICDKQFEND  270 (691)
Q Consensus       211 lp~~~~~rEvF~s~~~Q~is~ECidg~AtVLtp~Hyek~~~~a~~~~~~~~~C~rq~~~~  270 (691)
                      ..---..||||+|...-+++++||-|-.+|...+.+.++.+  ......+|+|...++-.
T Consensus        81 ~~y~sd~rely~Sde~~~~~~~~I~GKC~V~~~~d~~~~~~--~~~~~~~Ffc~~~Yd~~  138 (202)
T cd04708          81 KAYASDIREVYYSEDTLTVPVEAVEGKCEVRKKSDLPDSDA--PVIFEHVFFCELLYDPA  138 (202)
T ss_pred             cceecCceeEEEeccceeechhHcceEEEEEecCcchhhhc--cccCCCceEEEEEEcCC
Confidence            44445799999999999999999999999999999988874  34558999999999854

DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>cd04710 BAH_fungalPHD BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains

Probab=98.70  E-value=7.4e-09  Score=98.41  Aligned_cols=115  Identities=16%  Similarity=0.254  Sum_probs=93.7

Q ss_pred             hcCCeEEEEeeEEEEeecc--chhHHHHHHHHhhccCCC------------eeEEEEEeeeccccceecCCCCCCceeEe
Q 005537          157 CRNGVKVSVHDFVYVLAEE--NKRLIAYLEDMYEDSRGN------------KMVVVRWFHKIDEVGIFLPHNFNDREIFF  222 (691)
Q Consensus       157 ~RnG~tIsvh~FVyv~aee--~~r~vaYlEDmYED~kg~------------k~V~VRWFh~~~Ev~~~lp~~~~~rEvF~  222 (691)
                      ..+|+.+.|+|||||.+|.  +--|||-|.+++..+.+.            -+|+|+||-+..|+....  ...+||+|.
T Consensus         6 ~~~g~~~~vgD~Vyv~~~~~~ePyyIgrI~e~~~~~~~~~~~~~~~~~~~~~~vrV~wfYRp~Di~~~~--~~d~relf~   83 (135)
T cd04710           6 LKNGELLKVNDHIYMSSEPPGEPYYIGRIMEFVPKHEFPSGIHARVFPASYFQVRLNWYYRPRDISRRV--VADSRLLYA   83 (135)
T ss_pred             ccCCeEEeCCCEEEEecCCCCCCCEEEEEEEEEecCCCCccccccccCCCcEEEEEEEEeCHHHcCCcc--cCCceEEEE
Confidence            4689999999999999985  557899999999876444            389999999999974322  468899999


Q ss_pred             ecccccccceeecccccccChHHHHHHhhhhCCCCcceeeEEeeecCCCccce
Q 005537          223 SLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQLQPFICDKQFENDDVKPF  275 (691)
Q Consensus       223 s~~~Q~is~ECidg~AtVLtp~Hyek~~~~a~~~~~~~~~C~rq~~~~~vKPF  275 (691)
                      |-+.-++++++|-|..+|..-+.++.+..-.  .....|.|.+.||-...|=|
T Consensus        84 S~h~d~~p~~si~gKC~V~~~~di~~l~~~~--~~~~~Fyf~~lyD~~~~r~~  134 (135)
T cd04710          84 SMHSDICPIGSVRGKCTVRHRDQIPDLEEYK--KRPNHFYFDQLFDRYILRYY  134 (135)
T ss_pred             EeeEeeechHHEEeEEEEEEecccchhhhhc--cCCCEEEEEeeeCcchhhcc
Confidence            9999999999999999999888776544433  34689999999997655433

BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>cd04760 BAH_Dnmt1_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins

Probab=98.63  E-value=2e-08  Score=94.41  Aligned_cols=81  Identities=25%  Similarity=0.377  Sum_probs=70.1

Q ss_pred             CeEEEEeeEEEEeec--cchhHHHHHHHHhhccCCCeeEEEEEeeeccccceecCCCCCCceeEeecccccccceeeccc
Q 005537          160 GVKVSVHDFVYVLAE--ENKRLIAYLEDMYEDSRGNKMVVVRWFHKIDEVGIFLPHNFNDREIFFSLCLQDLSIECIDGL  237 (691)
Q Consensus       160 G~tIsvh~FVyv~ae--e~~r~vaYlEDmYED~kg~k~V~VRWFh~~~Ev~~~lp~~~~~rEvF~s~~~Q~is~ECidg~  237 (691)
                      |-.|.|.|+|+|-+.  .+.-|||+||-||||..|.||+.||||-+..|-.+-  ...++||||+|..-.+.++.||.|.
T Consensus         1 g~~i~vGD~V~v~~~~~~~p~~I~rV~~mfe~~~g~k~~h~rWf~Rg~dTVlG--~~~~~kEvFlsd~c~d~~l~~I~~K   78 (124)
T cd04760           1 GEELEAGDCVSVKPDDPTKPLYIARVTYMWKDSIGGKMFHAHWFCRGSDTVLG--ETSDPLELFLVDECEDMALSSIHGK   78 (124)
T ss_pred             CCEEecCCEEEEecCCCCCCcEEEEEhhheecCCCCcEEEEEEEEECCccccc--ccCCCcEEEeecccCCcchHHheee
Confidence            557999999999975  345689999999999999999999999998664322  3478999999999999999999999


Q ss_pred             ccccC
Q 005537          238 ATVLS  242 (691)
Q Consensus       238 AtVLt  242 (691)
                      ++|.-
T Consensus        79 v~V~~   83 (124)
T cd04760          79 VNVIY   83 (124)
T ss_pred             eEEEE
Confidence            99875

DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>cd04709 BAH_MTA BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins

Probab=98.63  E-value=2.3e-08  Score=97.99  Aligned_cols=109  Identities=22%  Similarity=0.338  Sum_probs=91.8

Q ss_pred             CeEEEEeeEEEEeeccchh-HHHHHHHHhhccCCCeeEEEEEeeecccccee------------------c-C---CCCC
Q 005537          160 GVKVSVHDFVYVLAEENKR-LIAYLEDMYEDSRGNKMVVVRWFHKIDEVGIF------------------L-P---HNFN  216 (691)
Q Consensus       160 G~tIsvh~FVyv~aee~~r-~vaYlEDmYED~kg~k~V~VRWFh~~~Ev~~~------------------l-p---~~~~  216 (691)
                      ++.|.|.|||||.++..+- +|+.||.|.+++.|+.+|+|+||-+..|+-..                  + |   +.+.
T Consensus         1 ~~~yrvGD~Vy~~~~~~~Py~I~rI~e~~~~~~~~~~vkV~wfYRp~DI~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~   80 (164)
T cd04709           1 ANMYRVGDYVYFESSPNNPYLIRRIEELNKTARGHVEAKVVCYYRRRDIPDSLYQLADQHRRELEEKSDDLTPKQRHQLR   80 (164)
T ss_pred             CcEEecCCEEEEECCCCCCCEEEEEEEEEeCCCCCEEEEEEEEEChhHccchhhhhcccccccccccccccchhhhhccC
Confidence            3578999999999986554 49999999999999999999999998886321                  1 1   2357


Q ss_pred             CceeEeecccccccceeecccccccChHHHHHHhhhhCCCCcceeeEEeeecCC
Q 005537          217 DREIFFSLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQLQPFICDKQFEND  270 (691)
Q Consensus       217 ~rEvF~s~~~Q~is~ECidg~AtVLtp~Hyek~~~~a~~~~~~~~~C~rq~~~~  270 (691)
                      .||||+|.+...+.|.||-|..+|..-..|+++..-  ......|+|..-||-.
T Consensus        81 ~rELF~S~~~d~~p~~~IrGKC~V~~~~d~~~l~~~--~~~~d~Ff~~~~YDP~  132 (164)
T cd04709          81 HRELFLSRQVETLPATHIRGKCSVTLLNDTESARSY--LAREDTFFYSLVYDPE  132 (164)
T ss_pred             cceeEEecccccccHHHeeeeEEEEEehhhhhhhhc--cCCCCEEEEEEEECCC
Confidence            999999999999999999999999999999987432  3467999999999865

The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>smart00743 Agenet Tudor-like domain present in plant sequences

Probab=98.63  E-value=1.3e-07  Score=77.24  Aligned_cols=58  Identities=38%  Similarity=0.465  Sum_probs=47.9

Q ss_pred             CCcCCCCEEEEeecCCCcceeeEEEEEEEecC-CEEEEEeCccccccccCcceEEEEecccccCCccccccccCCcccCC
Q 005537          388 QYLKVGSHVEVLSQDSGMRGCWYRASVIKKHK-DKVKVRYNDVQDAADEVNLLEEWVLASRVAAPDQLGLRVSGRRIVRP  466 (691)
Q Consensus       388 ~~FkvGs~VEV~Sde~G~rGsWF~AtVik~~~-~ky~V~Y~dl~ddeDg~~~L~EwV~~srva~PD~lgiR~~gR~~IRP  466 (691)
                      +.|++|+.|||+..+   .|+||+|+|++..+ ++|.|.|.+      +...++|.++.+                .|||
T Consensus         1 ~~~~~G~~Ve~~~~~---~~~W~~a~V~~~~~~~~~~V~~~~------~~~~~~e~v~~~----------------~LRp   55 (61)
T smart00743        1 SDFKKGDRVEVFSKE---EDSWWEAVVTKVLGDGKYLVRYLT------ESEPLKETVDWS----------------DLRP   55 (61)
T ss_pred             CCcCCCCEEEEEECC---CCEEEEEEEEEECCCCEEEEEECC------CCcccEEEEeHH----------------Hccc
Confidence            368999999999876   79999999999975 889999997      234567888754                5899


Q ss_pred             CCCC
Q 005537          467 SPES  470 (691)
Q Consensus       467 ~PP~  470 (691)
                      .||.
T Consensus        56 ~~~w   59 (61)
T smart00743       56 HPPW   59 (61)
T ss_pred             CCCC
Confidence            9974

Domain in plant sequences with possible chromatin-associated functions.

>cd04712 BAH_DCM_I BAH, or Bromo Adjacent Homology domain, as present in DNA (Cytosine-5)-methyltransferases (DCM) 1

Probab=98.49  E-value=6.4e-08  Score=91.43  Aligned_cols=101  Identities=23%  Similarity=0.262  Sum_probs=82.3

Q ss_pred             CeEEEEeeEEEEeeccch------------hHHHHHHHHhhccCCCeeEEEEEeeeccccceecCCCCCCceeEeecccc
Q 005537          160 GVKVSVHDFVYVLAEENK------------RLIAYLEDMYEDSRGNKMVVVRWFHKIDEVGIFLPHNFNDREIFFSLCLQ  227 (691)
Q Consensus       160 G~tIsvh~FVyv~aee~~------------r~vaYlEDmYED~kg~k~V~VRWFh~~~Ev~~~lp~~~~~rEvF~s~~~Q  227 (691)
                      |-+|.|-|+|+|-..+.+            -||++||-|+|+..|.+|+.+|||-+.-|--+.-  -+++||||+|.+-.
T Consensus         3 ~~~i~vGD~V~v~~d~~~~~~~~~~~~~~~~~i~~V~~~~e~~~g~~~~h~~W~yrp~eTv~g~--~~~~~ElFLSd~c~   80 (130)
T cd04712           3 GLTIRVGDVVSVERDDADSTTKWNDDHRWLPLVQFVEYMKKGSDGSKMFHGRWLYRGCDTVLGN--YANERELFLTNECT   80 (130)
T ss_pred             CCEEeCCCEEEEcCCCCCccccccccccccceEEEEEEeeecCCCceEEEEEEEEcchhccccc--cCCCceEEEecccc
Confidence            678999999999998865            4899999999999999999999999997765544  78999999999999


Q ss_pred             cccce----eecccccccChHHHHHHhhhhCCCCcceeeEEeeec
Q 005537          228 DLSIE----CIDGLATVLSPQHFEKFMNEATYPQLQPFICDKQFE  268 (691)
Q Consensus       228 ~is~E----Cidg~AtVLtp~Hyek~~~~a~~~~~~~~~C~rq~~  268 (691)
                      +++++    +|-|.+.|---..+++      -....-|+|...+.
T Consensus        81 ~~~~~~~~~~I~~k~~V~~~~~~~~------~~~~~~F~r~syy~  119 (130)
T cd04712          81 CLELDLLSTEIKGVHKVDWSGTPWG------KGLPEFFVRQSYYW  119 (130)
T ss_pred             ccccccccceeEEEEEEEEecCcCC------cCCCCEEEEEEEEC
Confidence            99999    9999988863222221      22345677777766

DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>cd04720 BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology domain, as present in Orc1p, which again is part of the Saccharomyces cerevisiae Sir1-origin recognition complex, and as present in Sir3p

Probab=98.35  E-value=3.6e-07  Score=90.64  Aligned_cols=109  Identities=20%  Similarity=0.360  Sum_probs=90.8

Q ss_pred             CCeEEEEeeEEEEeecc-chhHHHHHHHHhhccC-CCeeEEEEEeeeccccceecCC--CCC--------CceeEeeccc
Q 005537          159 NGVKVSVHDFVYVLAEE-NKRLIAYLEDMYEDSR-GNKMVVVRWFHKIDEVGIFLPH--NFN--------DREIFFSLCL  226 (691)
Q Consensus       159 nG~tIsvh~FVyv~aee-~~r~vaYlEDmYED~k-g~k~V~VRWFh~~~Ev~~~lp~--~~~--------~rEvF~s~~~  226 (691)
                      .|.+|.|-|-|.|-+++ ..-+||-|+.+.++.. ...+|.|.||-+.+|+.. .+.  .++        +-|||+|+++
T Consensus        49 d~~~~~vGD~Vlik~~~~~~~~V~iI~ei~~~~~~~~v~i~v~Wy~r~~Ei~~-~~~~~~~~~~~~~~~~~nElflT~~~  127 (179)
T cd04720          49 DGLELSVGDTILVKDDVANSPSVYLIHEIRLNTLNNEVELWVMWFLRWFEINP-ARYYKQFDPEFRSESNKNELYLTAEL  127 (179)
T ss_pred             CCeEEeCCCEEEEeCCCCCCCEEEEEEEEEeCCCCCEEEEEEEEcCCHHHccc-ccccccccchhcccCCCceEEEeccc
Confidence            68999999999999986 6688999999999987 446999999999999943 332  233        6899999999


Q ss_pred             ccccceeecccccccChHHHHHHhhhhCCCCcceeeEEeeecC
Q 005537          227 QDLSIECIDGLATVLSPQHFEKFMNEATYPQLQPFICDKQFEN  269 (691)
Q Consensus       227 Q~is~ECidg~AtVLtp~Hyek~~~~a~~~~~~~~~C~rq~~~  269 (691)
                      -.|.+++|.|.|+|||-+.|++.-..-. .....|+|.+-++.
T Consensus       128 d~i~l~~Ii~k~~Vls~~ef~~~~~~~~-~~~~~F~cR~~~d~  169 (179)
T cd04720         128 SEIKLKDIIDKANVLSESEFNDLSTDDK-NGERTFFCRYACEP  169 (179)
T ss_pred             ceEEhhheeeeEEEecHHHhhhhccccc-CCCceEEEEEEEeC
Confidence            9999999999999999998886654311 23479999999995

The Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>KOG1886 consensus BAH domain proteins [Transcription]

Probab=97.84  E-value=2.5e-06  Score=94.80  Aligned_cols=138  Identities=23%  Similarity=0.300  Sum_probs=107.3

Q ss_pred             hhhhhhhhhhcCCeEEEEeeEEEEeecc--chhHHHHHHHHhhccC-CCeeEEEEEeeecccc--ce-ecCCCCCCceeE
Q 005537          148 KKRKHYQSFCRNGVKVSVHDFVYVLAEE--NKRLIAYLEDMYEDSR-GNKMVVVRWFHKIDEV--GI-FLPHNFNDREIF  221 (691)
Q Consensus       148 Kr~kHY~sF~RnG~tIsvh~FVyv~aee--~~r~vaYlEDmYED~k-g~k~V~VRWFh~~~Ev--~~-~lp~~~~~rEvF  221 (691)
                      |++.+++.+.+-|-+|.+-|+|...+|+  ..-||||+||||.+.+ ++.||.|+||-+..|+  +. ..++.-++||+|
T Consensus        36 k~~h~~t~~~~~g~~~~~~d~vllvped~~~pPyvaii~~i~a~~~g~~~k~ev~W~YrPee~~~~~~~~~~a~~~relF  115 (464)
T KOG1886|consen   36 KSLHFETFIYRGGRYINYGDSVLLVPEDPGKPPYVAIIEDIYAQERGGNVKVEVQWFYRPEESEGGGSGKWGAKQPRELF  115 (464)
T ss_pred             ccccccceeeccCcccccCcceeecCCCCCCCCeeEEEeeeeccccCCCcceecccccCCCccCCCCCCCcccCCCcccc
Confidence            5677788888999999988888888887  6789999999999999 5999999999999887  33 345678999999


Q ss_pred             eecccccccceeecccccccChHHHHHHhhhhCCCCcceeeEEeeecCC--CccceeecccceehHhHH
Q 005537          222 FSLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQLQPFICDKQFEND--DVKPFDITLVKGYWRQEI  288 (691)
Q Consensus       222 ~s~~~Q~is~ECidg~AtVLtp~Hyek~~~~a~~~~~~~~~C~rq~~~~--~vKPFdltqL~GYw~Qei  288 (691)
                      +|.+.-.+.||-|-+..-|..=..|-..-+   ..-..-|.|.+.+++.  .+++|.....-+--+++|
T Consensus       116 ~SfH~De~~A~ti~~rC~V~fvp~~kqlp~---~~~~~~f~~r~vYd~~~~~~~~~~~~~~~~~~k~e~  181 (464)
T KOG1886|consen  116 LSFHEDEAFAETILHRCKVHFVPAYKQLPN---RVGHESFICRRVYDAVTSKLRKLRDGDFGDGQKLEI  181 (464)
T ss_pred             ccccccchhhhhhcccceeeeccccccccc---cCCCCCcccccccccccccccCccccchhcccccCC
Confidence            999999999999999988876333222221   1223568999999974  777777776655444444

>smart00333 TUDOR Tudor domain

Probab=97.19  E-value=0.0013  Score=52.57  Aligned_cols=45  Identities=36%  Similarity=0.500  Sum_probs=37.9

Q ss_pred             CcCCCCEEEEeecCCCcceeeEEEEEEEecC-CEEEEEeCccccccccCcceEEEEec
Q 005537          389 YLKVGSHVEVLSQDSGMRGCWYRASVIKKHK-DKVKVRYNDVQDAADEVNLLEEWVLA  445 (691)
Q Consensus       389 ~FkvGs~VEV~Sde~G~rGsWF~AtVik~~~-~ky~V~Y~dl~ddeDg~~~L~EwV~~  445 (691)
                      .|++|+.|.+.. +   .|.||+|+|+++.+ +.+.|.|.|+-+        .|+|+.
T Consensus         2 ~~~~G~~~~a~~-~---d~~wyra~I~~~~~~~~~~V~f~D~G~--------~~~v~~   47 (57)
T smart00333        2 TFKVGDKVAARW-E---DGEWYRARIIKVDGEQLYEVFFIDYGN--------EEVVPP   47 (57)
T ss_pred             CCCCCCEEEEEe-C---CCCEEEEEEEEECCCCEEEEEEECCCc--------cEEEeH
Confidence            578999999996 3   58999999999986 899999998843        378875

Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).

>smart00333 TUDOR Tudor domain

Probab=96.67  E-value=0.0048  Score=49.23  Aligned_cols=51  Identities=27%  Similarity=0.550  Sum_probs=46.2

Q ss_pred             cCCCCCEEEEee-CCCeEEEEEEEEcCCceEEEEeCCCCeEEEEecCCCcce
Q 005537          478 AIDVGTIVDAWW-HDGWWEGIVIQKDSEDKLHVYFPGEKQKSIFSRGDLRHS  528 (691)
Q Consensus       478 ~~~vGd~VDAw~-nDGWWEGvV~~v~~~~ky~V~FpGege~l~f~~sdLRps  528 (691)
                      .|++|+.|=|.+ ++.|..|+|+++.+++.+.|+|.+-|....+..++||+-
T Consensus         2 ~~~~G~~~~a~~~d~~wyra~I~~~~~~~~~~V~f~D~G~~~~v~~~~l~~l   53 (57)
T smart00333        2 TFKVGDKVAARWEDGEWYRARIIKVDGEQLYEVFFIDYGNEEVVPPSDLRPL   53 (57)
T ss_pred             CCCCCCEEEEEeCCCCEEEEEEEEECCCCEEEEEEECCCccEEEeHHHeecC
Confidence            478999999999 888999999999987899999999888889999999873

Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).

>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []

Probab=96.35  E-value=0.0077  Score=50.88  Aligned_cols=53  Identities=19%  Similarity=0.318  Sum_probs=35.2

Q ss_pred             CCCCCEEEEee-----CCCeEEEEEEEEcCCceEEEEeCC------CC--eEEEEecCCCcceeee
Q 005537          479 IDVGTIVDAWW-----HDGWWEGIVIQKDSEDKLHVYFPG------EK--QKSIFSRGDLRHSQEW  531 (691)
Q Consensus       479 ~~vGd~VDAw~-----nDGWWEGvV~~v~~~~ky~V~FpG------eg--e~l~f~~sdLRps~dW  531 (691)
                      |+.|+.||+..     .++|+.|+|++..++++|.|.+..      .+  -.-.++..+|||.--.
T Consensus         1 F~~G~~VEV~s~e~g~~gaWf~a~V~~~~~~~~~~V~Y~~~~~~~~~~~~l~e~V~~~~iRP~pP~   66 (68)
T PF05641_consen    1 FKKGDEVEVSSDEDGFRGAWFPATVLKENGDDKYLVEYDDLPDEDGESPPLKEWVDARRIRPCPPP   66 (68)
T ss_dssp             --TT-EEEEEE-SBTT--EEEEEEEEEEETT-EEEEEETT-SS--------EEEEEGGGEEE----
T ss_pred             CCCCCEEEEEEcCCCCCcEEEEEEEEEeCCCcEEEEEECCcccccccccccEEEechheEECcCcC
Confidence            67899999999     789999999999987799999852      22  2557788889997544

The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.

>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F

Probab=95.96  E-value=0.023  Score=46.30  Aligned_cols=49  Identities=31%  Similarity=0.568  Sum_probs=38.1

Q ss_pred             cCCCCEEEEeecCCCcceeeEEEEEEEec----CCEEEEEeCccccccccCcceEEEEecccc
Q 005537          390 LKVGSHVEVLSQDSGMRGCWYRASVIKKH----KDKVKVRYNDVQDAADEVNLLEEWVLASRV  448 (691)
Q Consensus       390 FkvGs~VEV~Sde~G~rGsWF~AtVik~~----~~ky~V~Y~dl~ddeDg~~~L~EwV~~srv  448 (691)
                      |++|++|-+.-    ..|.|+.|+|+++.    ...|+|-|...      ...+-|||+.+++
T Consensus         1 ~~vG~~v~~~~----~~~~~y~A~I~~~r~~~~~~~YyVHY~g~------nkR~DeWV~~~~i   53 (55)
T PF11717_consen    1 FEVGEKVLCKY----KDGQWYEAKILDIREKNGEPEYYVHYQGW------NKRLDEWVPESRI   53 (55)
T ss_dssp             --TTEEEEEEE----TTTEEEEEEEEEEEECTTCEEEEEEETTS------TGCC-EEEETTTE
T ss_pred             CCcCCEEEEEE----CCCcEEEEEEEEEEecCCCEEEEEEcCCC------CCCceeeecHHHc
Confidence            67999999986    46899999999984    34799999977      4578999998654

...

>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains

Probab=95.16  E-value=0.048  Score=42.10  Aligned_cols=46  Identities=22%  Similarity=0.410  Sum_probs=40.0

Q ss_pred             CCEEEEeeC--CCeEEEEEEEEcCCceEEEEeCCCCeEEEEecCCCcc
Q 005537          482 GTIVDAWWH--DGWWEGIVIQKDSEDKLHVYFPGEKQKSIFSRGDLRH  527 (691)
Q Consensus       482 Gd~VDAw~n--DGWWEGvV~~v~~~~ky~V~FpGege~l~f~~sdLRp  527 (691)
                      |+.|=|.+.  +.|..|+|.++.+++.+.|+|.+-|....+..++||+
T Consensus         1 G~~c~a~~~~d~~wyra~V~~~~~~~~~~V~f~DyG~~~~v~~~~l~~   48 (48)
T cd04508           1 GDLCLAKYSDDGKWYRAKITSILSDGKVEVFFVDYGNTEVVPLSDLRP   48 (48)
T ss_pred             CCEEEEEECCCCeEEEEEEEEECCCCcEEEEEEcCCCcEEEeHHHcCC
Confidence            667778776  7799999999998889999999988888888888886

For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.

>PF15057 DUF4537: Domain of unknown function (DUF4537)

Probab=94.97  E-value=0.3  Score=46.19  Aligned_cols=91  Identities=23%  Similarity=0.321  Sum_probs=63.7

Q ss_pred             CCEEEEeecCCCcceeeEEEEEEEe-cCCEEEEEeCccccccccCcceEEEEecccccCCccccccccCCcccCCCCCCC
Q 005537          393 GSHVEVLSQDSGMRGCWYRASVIKK-HKDKVKVRYNDVQDAADEVNLLEEWVLASRVAAPDQLGLRVSGRRIVRPSPESH  471 (691)
Q Consensus       393 Gs~VEV~Sde~G~rGsWF~AtVik~-~~~ky~V~Y~dl~ddeDg~~~L~EwV~~srva~PD~lgiR~~gR~~IRP~PP~~  471 (691)
                      |+.|=.+++++||   +|+|+|++. +...++|++.+-         ..+.|+...                |-+.-+..
T Consensus         1 g~~VlAR~~~DG~---YY~GtV~~~~~~~~~lV~f~~~---------~~~~v~~~~----------------iI~~~~~~   52 (124)
T PF15057_consen    1 GQKVLARREEDGF---YYPGTVKKCVSSGQFLVEFDDG---------DTQEVPISD----------------IIALSDAM   52 (124)
T ss_pred             CCeEEEeeCCCCc---EEeEEEEEccCCCEEEEEECCC---------CEEEeChHH----------------eEEccCcc
Confidence            7889999999988   899999998 688999999322         134444321                11111110


Q ss_pred             CCCCcccCCCCCEEEEee---CCCeEEEEEEE-----EcCCceEEEEeCCCC
Q 005537          472 KGRVSWAIDVGTIVDAWW---HDGWWEGIVIQ-----KDSEDKLHVYFPGEK  515 (691)
Q Consensus       472 ~~~~~~~~~vGd~VDAw~---nDGWWEGvV~~-----v~~~~ky~V~FpGeg  515 (691)
                          ...+++||.|=|-+   +..|=.|+|+.     ...+..|+|.|-...
T Consensus        53 ----~~~L~~GD~VLA~~~~~~~~Y~Pg~V~~~~~~~~~~~~~~~V~f~ng~  100 (124)
T PF15057_consen   53 ----RHSLQVGDKVLAPWEPDDCRYGPGTVIAGPERRASEDKEYTVRFYNGK  100 (124)
T ss_pred             ----cCcCCCCCEEEEecCcCCCEEeCEEEEECccccccCCceEEEEEECCC
Confidence                12467899998887   45588899997     556789999988554

>cd04711 BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins

Probab=94.50  E-value=0.012  Score=56.69  Aligned_cols=91  Identities=12%  Similarity=0.168  Sum_probs=65.5

Q ss_pred             hHHHHHHHHhhccCCC-------eeEEEEEeeeccccceecCCCC-CC-ceeEeecccccccceeecccccccChHHHHH
Q 005537          178 RLIAYLEDMYEDSRGN-------KMVVVRWFHKIDEVGIFLPHNF-ND-REIFFSLCLQDLSIECIDGLATVLSPQHFEK  248 (691)
Q Consensus       178 r~vaYlEDmYED~kg~-------k~V~VRWFh~~~Ev~~~lp~~~-~~-rEvF~s~~~Q~is~ECidg~AtVLtp~Hyek  248 (691)
                      =+||.|+.++-+++++       =||+||||=+..+...-..... .| ||||.|.+.-+++++-|.|-.+|.=.+.+..
T Consensus        27 y~VgrI~eI~~~k~~~~k~~~~~ikvrV~~fYRPEdi~~g~~~ayhsDirevy~Sd~~~~~~~~~I~GKC~V~~~~di~~  106 (137)
T cd04711          27 FRIGRIKEIFCAKRSNGKPNESDIKLRINKFYRPENTHKGFKATYHADINMLYWSDEEATVDFSAVQGRCTVEYGEDLPE  106 (137)
T ss_pred             cEEEEEEEEecCCCCCCCCCccceEEEEEEEecccccccccccccccceeeEEeecceeecChhhccceEEEEeccccch
Confidence            4788999999888776       1799999999999987665532 45 9999999999999999999999995444443


Q ss_pred             HhhhhCCCCcceeeEEeeec
Q 005537          249 FMNEATYPQLQPFICDKQFE  268 (691)
Q Consensus       249 ~~~~a~~~~~~~~~C~rq~~  268 (691)
                      ++.+-..-...-|.|..-|+
T Consensus       107 s~~~y~~~gpd~Fyf~~~Y~  126 (137)
T cd04711         107 SVQEYSGGGPDRFYFLEAYN  126 (137)
T ss_pred             hHHHHhcCCCcceEEhhhhc
Confidence            33322112234455554444

DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains

Probab=94.11  E-value=0.17  Score=38.99  Aligned_cols=36  Identities=31%  Similarity=0.473  Sum_probs=29.0

Q ss_pred             CCEEEEeecCCCcceeeEEEEEEEec-CCEEEEEeCcccc
Q 005537          393 GSHVEVLSQDSGMRGCWYRASVIKKH-KDKVKVRYNDVQD  431 (691)
Q Consensus       393 Gs~VEV~Sde~G~rGsWF~AtVik~~-~~ky~V~Y~dl~d  431 (691)
                      |+.+-+...+   -|.||||+|+++. .+.+.|.|.|+-+
T Consensus         1 G~~c~a~~~~---d~~wyra~V~~~~~~~~~~V~f~DyG~   37 (48)
T cd04508           1 GDLCLAKYSD---DGKWYRAKITSILSDGKVEVFFVDYGN   37 (48)
T ss_pred             CCEEEEEECC---CCeEEEEEEEEECCCCcEEEEEEcCCC
Confidence            5667777554   3799999999997 8889999998843

For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.

>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane

Probab=93.37  E-value=0.39  Score=40.01  Aligned_cols=48  Identities=23%  Similarity=0.534  Sum_probs=37.1

Q ss_pred             cCCCCCEEEEeeCCC--eEEEEEEEEcC-CceEEEEeCCCCeEEEEecCCCc
Q 005537          478 AIDVGTIVDAWWHDG--WWEGIVIQKDS-EDKLHVYFPGEKQKSIFSRGDLR  526 (691)
Q Consensus       478 ~~~vGd~VDAw~nDG--WWEGvV~~v~~-~~ky~V~FpGege~l~f~~sdLR  526 (691)
                      .|..|+.|.+||-++  |.+|.|+.-+. ...|+|.|.. |.++++...+|.
T Consensus         5 k~~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~D-Gtel~lke~dik   55 (55)
T PF09465_consen    5 KFAIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYED-GTELELKENDIK   55 (55)
T ss_dssp             SS-SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETT-S-EEEEECCCEE
T ss_pred             cccCCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcC-CCEEEecccccC
Confidence            478999999999876  99999999654 7899999997 667988887763

It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.

>PF12148 DUF3590: Protein of unknown function (DUF3590); InterPro: IPR021991 This domain is found in eukaryotes, and is typically between 83 and 97 amino acids in length

Probab=92.46  E-value=0.36  Score=43.47  Aligned_cols=62  Identities=16%  Similarity=0.313  Sum_probs=33.8

Q ss_pred             cceeeEEEEEEEec--------CCEEEEEeCccccccccCcceEEEEecccccCCccccccccCCcccCCCCCCCCCCCc
Q 005537          405 MRGCWYRASVIKKH--------KDKVKVRYNDVQDAADEVNLLEEWVLASRVAAPDQLGLRVSGRRIVRPSPESHKGRVS  476 (691)
Q Consensus       405 ~rGsWF~AtVik~~--------~~ky~V~Y~dl~ddeDg~~~L~EwV~~srva~PD~lgiR~~gR~~IRP~PP~~~~~~~  476 (691)
                      ..||||.|+|+.+.        .--|.|+|+++.+.  |    ...+..                ..|||.--..-  .-
T Consensus         8 ~~gAWfEa~i~~i~~~~~~~~e~viYhIkyddype~--g----vv~~~~----------------~~iRpRARt~l--~w   63 (85)
T PF12148_consen    8 NMGAWFEAQIVTITKKCMSDDEDVIYHIKYDDYPEN--G----VVEMRS----------------KDIRPRARTIL--KW   63 (85)
T ss_dssp             TT-EEEEEEEEEEEES-SSSSTTEEEEEEETT-GGG-------EEEEEG----------------GGEEE---SBE---G
T ss_pred             CCcceEEEEEEEeeccCCCCCCCEEEEEEeccCCCc--C----ceeccc----------------ccccceeeEec--cH
Confidence            45899999999873        22589999999643  2    222332                35676654321  12


Q ss_pred             ccCCCCCEEEEeeC
Q 005537          477 WAIDVGTIVDAWWH  490 (691)
Q Consensus       477 ~~~~vGd~VDAw~n  490 (691)
                      ..+++|+.|=+-||
T Consensus        64 ~~L~VG~~VMvNYN   77 (85)
T PF12148_consen   64 DELKVGQVVMVNYN   77 (85)
T ss_dssp             GG--TT-EEEEEE-
T ss_pred             HhCCcccEEEEecC
Confidence            36889999987775

It is found in association with PF00097 from PFAM, PF02182 from PFAM, PF00628 from PFAM, PF00240 from PFAM. There are two conserved sequence motifs: RAR and NYN. The domain is part of the protein NIRF which has zinc finger and ubiquitinating domains. The function of this domain is likely to be mainly structural, however this has not been confirmed. ; PDB: 3DB4_A 3ASK_A 3DB3_A 2L3R_A.

>smart00561 MBT Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2

Probab=91.80  E-value=0.96  Score=41.15  Aligned_cols=53  Identities=17%  Similarity=0.263  Sum_probs=41.8

Q ss_pred             CCCCCcCCCCEEEEeecCCCcceeeEEEEEEEecCCEEEEEeCccccccccCcceEEEEec
Q 005537          385 PSSQYLKVGSHVEVLSQDSGMRGCWYRASVIKKHKDKVKVRYNDVQDAADEVNLLEEWVLA  445 (691)
Q Consensus       385 ~~p~~FkvGs~VEV~Sde~G~rGsWF~AtVik~~~~ky~V~Y~dl~ddeDg~~~L~EwV~~  445 (691)
                      .....|++|.++|+...  ---..+-.|||+++.+.+++|.|+...+      .-.+|+..
T Consensus        23 ~~~~~F~vGmkLEavD~--~~~~~i~vAtV~~v~g~~l~v~~dg~~~------~~D~W~~~   75 (96)
T smart00561       23 SPPNGFKVGMKLEAVDP--RNPSLICVATVVEVKGYRLLLHFDGWDD------KYDFWCDA   75 (96)
T ss_pred             CccCcccCCCEEEEECC--CCCceEEEEEEEEEECCEEEEEEccCCC------cCCEEEEC
Confidence            33478999999999844  3346888999999999999999997732      14688876

Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. These proteins are involved in transcriptional regulation.

>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified []

Probab=91.32  E-value=0.62  Score=39.99  Aligned_cols=51  Identities=20%  Similarity=0.375  Sum_probs=38.7

Q ss_pred             CCCCCEEEEeeCC-CeEEEEEEEEc-------CCceEEEEeCCCCeEEEEecCCCccee
Q 005537          479 IDVGTIVDAWWHD-GWWEGIVIQKD-------SEDKLHVYFPGEKQKSIFSRGDLRHSQ  529 (691)
Q Consensus       479 ~~vGd~VDAw~nD-GWWEGvV~~v~-------~~~ky~V~FpGege~l~f~~sdLRps~  529 (691)
                      |.+||.|=|-..+ .||.|+|+...       ..+.+.|+|-|+.+..-+..++|+|-.
T Consensus         1 f~~GdlVWaK~~g~pwWPa~V~~~~~~~~~~~~~~~~~V~Ffg~~~~~wv~~~~i~~f~   59 (86)
T PF00855_consen    1 FRPGDLVWAKLKGYPWWPARVCDPDEKSKKKRKDGHVLVRFFGDNDYAWVKPSNIKPFS   59 (86)
T ss_dssp             -STTEEEEEEETTSEEEEEEEEECCHCTSCSSSSTEEEEEETTTTEEEEEEGGGEEECC
T ss_pred             CCCCCEEEEEeCCCCCCceEEeecccccccCCCCCEEEEEecCCCCEEEECHHHhhChh
Confidence            5688888877654 49999999863       357899999999877777777766543

The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. It is present in proteins of nuclear origin and plays a role in cell growth and differentiation. Due to its position, the composition of amino acids close to the PWWP motif and the pattern of other domains present it has been suggested that the domain is involved in protein-protein interactions [].; PDB: 3LYI_B 2L89_A 2NLU_A 1RI0_A 1KHC_A 3QKJ_C 2DAQ_A 1N27_A 3PFS_B 3QJ6_A ....

>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes

Probab=90.95  E-value=6.4  Score=37.78  Aligned_cols=106  Identities=18%  Similarity=0.279  Sum_probs=64.0

Q ss_pred             CCCCEEEEeecCCCcceeeEEEEEEEecC--CEEEEEeCccccccccCcceEEEEecccccCCccccccccCCcccCCCC
Q 005537          391 KVGSHVEVLSQDSGMRGCWYRASVIKKHK--DKVKVRYNDVQDAADEVNLLEEWVLASRVAAPDQLGLRVSGRRIVRPSP  468 (691)
Q Consensus       391 kvGs~VEV~Sde~G~rGsWF~AtVik~~~--~ky~V~Y~dl~ddeDg~~~L~EwV~~srva~PD~lgiR~~gR~~IRP~P  468 (691)
                      ++|+.|=.+-...+-.+.|+-|+|++..+  ++|.|+  |.-+  ++... .=.++                +..|=|.|
T Consensus         1 q~G~~VAak~~~~~~~~~WIla~Vv~~~~~~~rYeV~--D~d~--~~~~~-~~~~~----------------~~~iIPLP   59 (130)
T PF07039_consen    1 QPGDQVAAKVKQGNEEEEWILAEVVKYNSDGNRYEVE--DPDP--EEEKK-RYKLS----------------RKQIIPLP   59 (130)
T ss_dssp             -TT-EEEEEECTTTTTCEEEEEEEEEEETTTTEEEEE--ETTT--CTTTE-EEEEE----------------GGGEEEE-
T ss_pred             CCCCEEEEEcCCCCCCCCEEEEEEEEEeCCCCEEEEe--cCCC--CCCCc-eEEeC----------------HHHEEECC
Confidence            47888888765555669999999999863  478776  2211  11112 22222                23444555


Q ss_pred             C--CCCCCCcccCCCCCEEEEeeCC--CeEEEEEEEE--cCCceEEEEeCCCCeE
Q 005537          469 E--SHKGRVSWAIDVGTIVDAWWHD--GWWEGIVIQK--DSEDKLHVYFPGEKQK  517 (691)
Q Consensus       469 P--~~~~~~~~~~~vGd~VDAw~nD--GWWEGvV~~v--~~~~ky~V~FpGege~  517 (691)
                      .  +........|..|+.|=|.|=+  +...|+|...  ...+.|.+.|.|+.+.
T Consensus        60 ~~~~~~~~~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~~~  114 (130)
T PF07039_consen   60 KKAPPDTDPLAEFPKGTKVLALYPDTTCFYPATVVSPPKKKSGEYKLKFEDDEDA  114 (130)
T ss_dssp             SB--TTT-GGGS--TT-EEEEE-TTSSEEEEEEEEEE-SSTTS-EEEEECTTTST
T ss_pred             CccCCCCCchhhCCCCCEEEEECCCCceEEEEEEEeCCCCCCCcEEEEEeCCCCc
Confidence            4  1112234679999999999866  6999999887  5678999999986653

It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.

>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins

Probab=88.94  E-value=0.95  Score=48.01  Aligned_cols=55  Identities=18%  Similarity=0.199  Sum_probs=42.4

Q ss_pred             ccCCCCCEEEEee--CCCeEEEEEEEEcC-CceEEEEeCCCCeEEEEecCCCcceeee
Q 005537          477 WAIDVGTIVDAWW--HDGWWEGIVIQKDS-EDKLHVYFPGEKQKSIFSRGDLRHSQEW  531 (691)
Q Consensus       477 ~~~~vGd~VDAw~--nDGWWEGvV~~v~~-~~ky~V~FpGege~l~f~~sdLRps~dW  531 (691)
                      ..|+|||..-|.|  +|.|.+++|..|.. .+.+.|.|.|=|..-++...+|+|.-..
T Consensus        67 ~~WkvGd~C~A~~s~Dg~~Y~A~I~~i~~~~~~~~V~f~gYgn~e~v~l~dL~~~~~~  124 (264)
T PF06003_consen   67 KKWKVGDKCMAVYSEDGQYYPATIESIDEEDGTCVVVFTGYGNEEEVNLSDLKPSEGD  124 (264)
T ss_dssp             T---TT-EEEEE-TTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGEEETT--
T ss_pred             cCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEcccCCeEeeehhhhcccccc
Confidence            4799999999988  44599999999986 4689999999888889999999998665

The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.

>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids

Probab=88.94  E-value=0.8  Score=40.03  Aligned_cols=53  Identities=26%  Similarity=0.424  Sum_probs=41.2

Q ss_pred             CCCCCEEEEeeCC-CeEEEEEEEEcC----------CceEEEEeCCCCeEEEEecCCCcceeee
Q 005537          479 IDVGTIVDAWWHD-GWWEGIVIQKDS----------EDKLHVYFPGEKQKSIFSRGDLRHSQEW  531 (691)
Q Consensus       479 ~~vGd~VDAw~nD-GWWEGvV~~v~~----------~~ky~V~FpGege~l~f~~sdLRps~dW  531 (691)
                      |.+||.|=|=..+ .||.|+|+....          ++.|.|+|-|+.+..-+..++|+|-.+-
T Consensus         1 f~~GdlVwaK~~g~pwWPa~V~~~~~~~~~~~~~~~~~~~~V~Ffg~~~~~wv~~~~l~pf~~~   64 (87)
T cd05162           1 FRPGDLVWAKMKGYPWWPALVVDPPKDSKKAKKKAKEGKVLVLFFGDKTFAWVGAERLKPFTEH   64 (87)
T ss_pred             CCCCCEEEEeCCCCCCCCEEEccccccchhhhccCCCCEEEEEEeCCCcEEEeCccceeeccch
Confidence            5688888887766 799999998542          3689999999888777777777775544

The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.

>smart00293 PWWP domain with conserved PWWP motif

Probab=86.86  E-value=1.3  Score=36.97  Aligned_cols=49  Identities=27%  Similarity=0.443  Sum_probs=40.2

Q ss_pred             CCCCCEEEEeeCC-CeEEEEEEEEc-----------CCceEEEEeCCCCeEEEEecCCCcc
Q 005537          479 IDVGTIVDAWWHD-GWWEGIVIQKD-----------SEDKLHVYFPGEKQKSIFSRGDLRH  527 (691)
Q Consensus       479 ~~vGd~VDAw~nD-GWWEGvV~~v~-----------~~~ky~V~FpGege~l~f~~sdLRp  527 (691)
                      |.+||.|=|=..+ .||.|.|+...           .+..|.|+|-|+++..-+..++|.|
T Consensus         1 f~~GdlVwaK~~G~p~WPa~V~~~~~~~~~~~~~~~~~~~~~V~Ffg~~~~awv~~~~l~p   61 (63)
T smart00293        1 FKPGDLVWAKMKGFPWWPALVVSPKETPDNIRKRKRFENLYPVLFFGDKDTAWISSSKLFP   61 (63)
T ss_pred             CCCCCEEEEECCCCCCCCeEEcCcccCChhHhhccCCCCEEEEEEeCCCCEEEECccceee
Confidence            4678988887777 79999998742           1468999999999988888888876

conservation of Pro-Trp-Trp-Pro residues

>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane

Probab=85.88  E-value=2.6  Score=35.24  Aligned_cols=38  Identities=26%  Similarity=0.422  Sum_probs=29.0

Q ss_pred             CCcCCCCEEEEeecCCCcceeeEEEEEEEe--cCCEEEEEeCc
Q 005537          388 QYLKVGSHVEVLSQDSGMRGCWYRASVIKK--HKDKVKVRYND  428 (691)
Q Consensus       388 ~~FkvGs~VEV~Sde~G~rGsWF~AtVik~--~~~ky~V~Y~d  428 (691)
                      ..|..|+.|.++=-.+   ..||.|+|++.  ..+.|.|.|.|
T Consensus         4 ~k~~~Ge~V~~rWP~s---~lYYe~kV~~~d~~~~~y~V~Y~D   43 (55)
T PF09465_consen    4 RKFAIGEVVMVRWPGS---SLYYEGKVLSYDSKSDRYTVLYED   43 (55)
T ss_dssp             SSS-SS-EEEEE-TTT---S-EEEEEEEEEETTTTEEEEEETT
T ss_pred             ccccCCCEEEEECCCC---CcEEEEEEEEecccCceEEEEEcC
Confidence            7899999999994433   48999999996  48899999995

It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.

>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF

Probab=84.15  E-value=1.8  Score=38.42  Aligned_cols=54  Identities=24%  Similarity=0.294  Sum_probs=43.3

Q ss_pred             cCCCCCEEEEeeCC-CeEEEEEEEEcC----CceEEEEeCCCCeEEEEecCCCcceeee
Q 005537          478 AIDVGTIVDAWWHD-GWWEGIVIQKDS----EDKLHVYFPGEKQKSIFSRGDLRHSQEW  531 (691)
Q Consensus       478 ~~~vGd~VDAw~nD-GWWEGvV~~v~~----~~ky~V~FpGege~l~f~~sdLRps~dW  531 (691)
                      .|.+||.|=|=..+ -||.|.|.....    ...|.|+|-|+++.--+..++|-|-.+.
T Consensus         2 ~f~~GdlVwaK~kGyp~WPa~I~~~~~~~~~~~~~~V~FfGt~~~a~v~~~~l~pf~~~   60 (83)
T cd05834           2 QFKAGDLVFAKVKGYPAWPARVDEPEDWKPPGKKYPVYFFGTHETAFLKPEDLFPYTEN   60 (83)
T ss_pred             CCCCCCEEEEecCCCCCCCEEEecccccCCCCCEEEEEEeCCCCEeEECHHHceecccc
Confidence            47899999876544 499999998753    5799999999988888888888776654

This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.

>PLN00104 MYST -like histone acetyltransferase; Provisional

Probab=80.52  E-value=3.3  Score=47.22  Aligned_cols=53  Identities=25%  Similarity=0.409  Sum_probs=43.5

Q ss_pred             CCcCCCCEEEEeecCCCcceeeEEEEEEEecC--------CEEEEEeCccccccccCcceEEEEeccccc
Q 005537          388 QYLKVGSHVEVLSQDSGMRGCWYRASVIKKHK--------DKVKVRYNDVQDAADEVNLLEEWVLASRVA  449 (691)
Q Consensus       388 ~~FkvGs~VEV~Sde~G~rGsWF~AtVik~~~--------~ky~V~Y~dl~ddeDg~~~L~EwV~~srva  449 (691)
                      ..|.+|++|=+...   .-|.|+.|+||+...        ..|+|-|..+      ...|-|||..+|+.
T Consensus        52 ~~~~VGekVla~~~---~Dg~~~~A~VI~~R~~~~~~~~~~~YYVHY~g~------nrRlDEWV~~~rLd  112 (450)
T PLN00104         52 LPLEVGTRVMCRWR---FDGKYHPVKVIERRRGGSGGPNDYEYYVHYTEF------NRRLDEWVKLEQLD  112 (450)
T ss_pred             ceeccCCEEEEEEC---CCCCEEEEEEEEEeccCCCCCCCceEEEEEecC------CccHhhccCHhhcc
Confidence            78999999999854   347899999999853        3699999977      35788999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	691
1w4s_A	174	Polybromo, polybromo 1 protein; BAH, bromo-associa	5e-30
4dov_A	163	ORC1, origin recognition complex subunit 1; DNA re	7e-25
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	4e-13
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	3e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05

>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A* Length = 163

 Score =  100 bits (250), Expect = 7e-25
 Identities = 32/162 (19%), Positives = 64/162 (39%), Gaps = 19/162 (11%)

Query: 132 QYTKEFLWLGSSWMSRKKR-KHYQSFCRNG-----VKVSVHDFVYVLAEENKR-LIAYLE 184
           +  + F W+G    +RK+  + Y+  C        + + V  FV +  E+NK+  +A L 
Sbjct: 2   KTRQTFSWVGRPLPNRKQFQQMYREICMKINDGSEIHIKVGQFVLIQGEDNKKPYVAKLI 61

Query: 185 DMYED---SRGNKMVVVRWFHKIDEV----GIFLPHNFNDREIFF---SLCLQDLSIECI 234
           +++++       K   V+WF +  E+       L  +   +EIF+   S     +++E I
Sbjct: 62  ELFQNGAEVPPKKCARVQWFVRFLEIPVSKRHLLGRSPPAQEIFWYDCSDWDNKINVETI 121

Query: 235 DGLATVLSPQHFEKFMNEATYPQLQPFICDKQFENDDVKPFD 276
            G   V++    E    +    +         +   D  P  
Sbjct: 122 IGPVQVVALAPEEVIPVDQKSEET--LFVKLSWNKKDFAPLP 161

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* Length = 1002

 Score = 71.8 bits (175), Expect = 4e-13
 Identities = 52/338 (15%), Positives = 110/338 (32%), Gaps = 40/338 (11%)

Query: 132 QYTKEFLWLGSSWMSRKKRKHYQSFCRNGVKVSVHDFVYVLAEENKRL--IAYLEDMYED 189
           Q      W+G +  +  K+ +Y+  C +   + V D V V+ +++ +   +A +  ++ED
Sbjct: 128 QNKNRISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWED 187

Query: 190 SRGNKMVVVRWFHKIDEVGIFLPHNFNDREIFFSLCLQDLSIECIDGLATVLSPQHFEKF 249
           S   +M    WF    +    L    +  E+F     +D+ +  I     V+     E  
Sbjct: 188 SSNGQMFHAHWFCAGTD--TVLGATSDPLELFLVDECEDMQLSYIHSKVKVIYKAPSEN- 244

Query: 250 MNEATYPQLQPFICDKQFENDDVKPFDITLVKGYWRQEIIRHLFTFTSPKNCSSSQQPFD 309
                +        +   E DD K +       +++    +    F SP     ++    
Sbjct: 245 -----WAMEGGMDPESLLEGDDGKTY-------FYQLWYDQDYARFESPPKTQPTED--- 289

Query: 310 GQRAEKIVNDVVETRPKKRLRQSKDADVCDYTNRKEPMDAACMDLKISTKSSVDGGVGTL 369
                   N         RL + +  ++     + E +D+  +    +         G L
Sbjct: 290 --------NKFKFCVSCARLAEMRQKEIPRVLEQLEDLDSRVLYYSATKN-------GIL 334

Query: 370 AGVGGAALLSKKEADPSSQYLKVGSHVEVLSQDSGMRGCWYRASVIKKHKDKVKVRYNDV 429
             VG    L  +    + +             D  +    YR     K+ D +K    D 
Sbjct: 335 YRVGDGVYLPPEAFTFNIKLSSPVKRPRKEPVDEDLYPEHYR-----KYSDYIKGSNLDA 389

Query: 430 QDAADEVNLLEEWVLASRVAAPDQLGLRVSGRRIVRPS 467
            +      + E +        P++  +++   +  RP 
Sbjct: 390 PEPYRIGRIKEIFCPKKSNGRPNETDIKIRVNKFYRPE 427

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* Length = 1330

 Score = 69.2 bits (168), Expect = 3e-12
 Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 4/108 (3%)

Query: 135 KEFLWLGSSWMSRKKRKHYQSFCRNGVKVSVHDFVYVLAEENKRL--IAYLEDMYEDSRG 192
               WLG      + R +YQ    +   + V D V V+ +++ +   +A +  ++ED  G
Sbjct: 442 DRISWLGQPMKIEENRTYYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWEDKNG 501

Query: 193 NKMVVVRWFHKIDEVGIFLPHNFNDREIFFSLCLQDLSIECIDGLATV 240
             M    WF    +    L    +  E+F     +++ +  I     V
Sbjct: 502 QMMFHAHWFCAGTD--TVLGATSDPLELFLVGECENMQLSYIHSKVKV 547

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 6e-05
 Identities = 38/266 (14%), Positives = 83/266 (31%), Gaps = 85/266 (31%)

Query: 202 HKID-EVGIFLPHNFND-REIFFSLCLQDLSIECI-DGLATVLSPQHFEKFMN-----EA 253
           H +D E G    + + D   +F    + +   + + D   ++LS +  +  +        
Sbjct: 5   HHMDFETGE-HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63

Query: 254 TYPQLQPFICDKQFENDDVKPF-DITLVKGY-WRQEIIRHLFTFTSPKNCSSSQQPFDGQ 311
           T  +L   +  KQ   + V+ F +  L   Y +    I+     T  +  S   + +  Q
Sbjct: 64  TL-RLFWTLLSKQ--EEMVQKFVEEVLRINYKFLMSPIK-----TEQRQPSMMTRMYIEQ 115

Query: 312 RAEKIVNDVVETRPKKRLRQSKDADVCDYTNRKEPMDAACMDLKISTKSSVDGGVGTLAG 371
           R +++ ND                      +R +P       L+                
Sbjct: 116 R-DRLYNDNQVFAK-------------YNVSRLQPYLK----LR---------------- 141

Query: 372 VGGAALLSKKEADPSSQYLKVGSHVEVLSQDSGMRGC---WYRASVIKKHKDKVKVRYND 428
               ALL  +     ++ + +           G+ G    W    V   +  KV+ + + 
Sbjct: 142 ---QALLELR----PAKNVLI--D--------GVLGSGKTWVALDVCLSY--KVQCKMD- 181

Query: 429 VQDAADEVNLLEEWVLASRVAAPDQL 454
                 ++     W+      +P+ +
Sbjct: 182 -----FKIF----WLNLKNCNSPETV 198

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 7e-05
 Identities = 54/337 (16%), Positives = 97/337 (28%), Gaps = 100/337 (29%)

Query: 21  WEEVNASSDRGRREVHYYLKRRDGCGSDLAVIGKEKSSRHMSYRYVISNTSFTTSLYKLR 80
              +     +       Y+++RD   +D  V  K   SR   Y           +L +LR
Sbjct: 95  MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY------LKLRQALLELR 148

Query: 81  SRREVVDWLNSIVSGSPVLKSSQFAGRFLG-GKEVRLLDGESFKDVQSG--------TLG 131
             + V+      + G             LG GK    LD      VQ           L 
Sbjct: 149 PAKNVL------IDG------------VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190

Query: 132 QYTKEFLWLGSSW-MSRKKRKHYQSFCRNG--VKVSVHDFVYVLAEENKRLIAY------ 182
                   L     +  +   ++ S   +   +K+ +H     +  E +RL+        
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS----IQAELRRLLKSKPYENC 246

Query: 183 ---LEDMYEDSR-------GNKMVVV-RWFHKIDEVG------IFLPHN---FNDREI-- 220
              L ++  +++         K+++  R+    D +       I L H+       E+  
Sbjct: 247 LLVLLNVQ-NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 221 FFSLCL----QDLSIECIDGLATVLS---------PQHFEKF----------MNEATYPQ 257
                L    QDL  E +      LS            ++ +          + E++   
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365

Query: 258 LQPFICDKQFE-----NDDVK-PFDITLVKGYWRQEI 288
           L+P    K F+           P    L    W   I
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTI-LLSL-IWFDVI 400

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	691
d1m4za_	217	b.34.12.1 (A:) Origin-recognition complex protein	2e-06

>d1m4za_ b.34.12.1 (A:) Origin-recognition complex protein 120kDa subunit, Orc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 217

class: All beta proteins
fold: SH3-like barrel
superfamily: BAH domain
family: BAH domain
domain: Origin-recognition complex protein 120kDa subunit, Orc1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 25/177 (14%), Positives = 46/177 (25%), Gaps = 29/177 (16%)

Query: 146 SRKKRKHYQSFCRNGVKVSVHDFVYVLAEENKRLIAYL---------------------- 183
              K +HY     +G+K+   D V +  E       Y+                      
Sbjct: 36  RGAKTEHYLKRSSDGIKLGRGDSVVMHNEAAGTYSVYMIQELRLNTLNNVVELWALTYLR 95

Query: 184 --EDMYEDSRGNKMVVVRWFHKIDE-VGIFLPHNFNDREIFFSLCLQDLSIECIDGLATV 240
             E                 ++             N  E++ +  L +L +     +A V
Sbjct: 96  WFEVNPLAHYRQFNPDANILNRPLNYYNKLFSETANKNELYLTAELAELQLFNFIRVANV 155

Query: 241 LSPQHFEKFMNEATYPQLQPFICDKQFENDDVK--PFDITLVKGYWRQEIIRHLFTF 295
           +    +E         +   F      E    K    +I  VK Y ++   R    +
Sbjct: 156 MDGSKWEVLKGNVDPERD--FTVRYICEPTGEKFVDINIEDVKAYIKKVEPREAQEY 210

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	691
d1m4za_	217	Origin-recognition complex protein 120kDa subunit,	98.27
d1wgsa_	133	Probable histone acetyltransferase MYST1 {Mouse (M	96.41
d2d9ta1	60	Tudor domain-containing protein 3, TDRD3 {Mouse (M	95.5
d1mhna_	59	Survival motor neuron protein 1, smn {Human (Homo	94.74
d1mhna_	59	Survival motor neuron protein 1, smn {Human (Homo	94.59
d1wjqa_	107	Lethal(3)malignant brain tumor-like 3 protein, L3M	94.52
d1oz2a3	106	Lethal(3)malignant brain tumor-like protein {Human	94.38
d2buda1	88	Putative histone acetyltransferase MOF {Fruit fly	93.86
d2hqxa1	90	P100 co-activator, SND1 {Human (Homo sapiens) [Tax	93.8
d2d9ta1	60	Tudor domain-containing protein 3, TDRD3 {Mouse (M	93.8
d2hqxa1	90	P100 co-activator, SND1 {Human (Homo sapiens) [Tax	92.6
d2diqa1	97	Tudor and KH domain-containing protein TDRKH {Huma	92.43
d1wjsa_	127	Lethal(3)malignant brain tumor-like 3 protein, L3M	91.99
d2f5ka1	83	Mortality factor 4-like protein 1, MRG15 {Human (H	90.85
d2diqa1	97	Tudor and KH domain-containing protein TDRKH {Huma	90.73
d1khca_	137	DNA methyltransferase DNMT3B {Mouse (Mus musculus)	90.63
d2nlua1	100	Hepatoma-derived growth factor, HDGF {Human (Homo	90.5
d1oi1a2	104	Scml2 protein {Human (Homo sapiens) [TaxId: 9606]}	90.36
d1oz2a1	110	Lethal(3)malignant brain tumor-like protein {Human	89.78
d1oz2a2	108	Lethal(3)malignant brain tumor-like protein {Human	88.74
d1oi1a1	103	Scml2 protein {Human (Homo sapiens) [TaxId: 9606]}	88.65
d1wjra_	127	Scm-like with four MBT domains protein 2, SFMBT2 (	84.61
d1h3za_	108	Hypothetical protein SPBC215.07c {Fission yeast (S	81.9

>d1m4za_ b.34.12.1 (A:) Origin-recognition complex protein 120kDa subunit, Orc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: BAH domain
family: BAH domain
domain: Origin-recognition complex protein 120kDa subunit, Orc1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.27  E-value=4.3e-09  Score=76.67  Aligned_cols=132  Identities=15%  Similarity=0.197  Sum_probs=97.4

Q ss_pred             HHHHHHCCCEEEEEEEEEEEEECCCHH-HHHHHHHHHH-----------------------CCCCCEEEEEEEEEECCCC
Q ss_conf             113123299199873389996044303-7778888741-----------------------2679703999983304533
Q 005537          152 HYQSFCRNGVKVSVHDFVYVLAEENKR-LIAYLEDMYE-----------------------DSRGNKMVVVRWFHKIDEV  207 (691)
Q Consensus       152 HY~sF~RnG~tIsVh~FVyvlaee~~r-~vaYlEDmYE-----------------------D~kg~k~V~VRWFh~~~Ev  207 (691)
                      +|-..---|+++.+.|.||+-+++-+. .|+-|++.=+                       ..-++++++++||-+.+|.
T Consensus        42 ~~~~r~~D~~e~~~GD~Vlvk~~~~~~~~v~iI~ei~~~~~~~~~e~~~~~~lr~~e~~~~~~~~~~~~~~~w~~~p~e~  121 (217)
T d1m4za_          42 HYLKRSSDGIKLGRGDSVVMHNEAAGTYSVYMIQELRLNTLNNVVELWALTYLRWFEVNPLAHYRQFNPDANILNRPLNY  121 (217)
T ss_dssp             EEEEETTTCCEECTTCEEEEEETTTTEEEEEEEEEEEEETTTTEEEEEEEEEECGGGSCHHHHHHHHCHHHHHSCCCHHH
T ss_pred             EEEEEECCCEEEECCCEEEEECCCCCCCEEEEEEEECCCCCCCHHEEEEECCCCHHHHCCCHHHHHCCCCEEEECCCHHH
T ss_conf             89887208838844889999479999735899966314764210003442002044434310111015422461581454


Q ss_pred             -CEECCCCCCCCEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECC--CCCCCEEECCCCEEH
Q ss_conf             -30238998984068412641001024305311039588999765307877630667863049--984201330322000
Q 005537          208 -GIFLPHNFNDREIFFSLCLQDLSIECIDGLATVLSPQHFEKFMNEATYPQLQPFICDKQFEN--DDVKPFDITLVKGYW  284 (691)
Q Consensus       208 -~~~lp~~~~~rEvF~s~~~Q~isvECiDG~AtVLtp~H~ek~~~~a~~s~~~~~~C~rq~~n--~~vkPFdltqL~GYw  284 (691)
                       .....+..+++|+|+|+.+-+|.+++|.|.|.||++.-|+......  .....|+|.+.++.  .+++|+||..+.++.
T Consensus       122 ~~~k~r~~~~~~ElflT~~~d~i~~~~I~~k~~V~s~~ef~~~~~~~--~~~~~F~cr~~~D~~~~~f~~id~~~~~~~~  199 (217)
T d1m4za_         122 YNKLFSETANKNELYLTAELAELQLFNFIRVANVMDGSKWEVLKGNV--DPERDFTVRYICEPTGEKFVDINIEDVKAYI  199 (217)
T ss_dssp             HHHHHHHHSCTTEEEEEEEEEEECGGGEEEEEEEECHHHHHHHGGGC--CTTTEEEEEEECCTTSCCCEECCHHHHHHHH
T ss_pred             HHHCCCCCCCCCEEEECCCCCEEEHHHEEEEEEEECHHHHCCHHHCC--CCCCEEEEEEEECCCCCCEEECCHHHHHHHC
T ss_conf             31110011675505763853500545403357995289930002115--7797599998975887804664478764312


Q ss_pred             H
Q ss_conf             7
Q 005537          285 R  285 (691)
Q Consensus       285 ~  285 (691)
                      .
T Consensus       200 ~  200 (217)
T d1m4za_         200 K  200 (217)
T ss_dssp             T
T ss_pred             C
T ss_conf             0

>d1wgsa_ b.34.13.3 (A:) Probable histone acetyltransferase MYST1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo barrel domain
domain: Probable histone acetyltransferase MYST1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.41  E-value=0.0064  Score=35.61  Aligned_cols=51  Identities=25%  Similarity=0.475  Sum_probs=40.7

Q ss_pred             CCCCCCCEEEEEECCCCCCEEEEEEEEEEEC------CCEEEEEECCCCCCCCCCCCEEEEEECCCC
Q ss_conf             7768999899963399851126989999841------987999967655532467540899963203
Q 005537          388 QYLKVGSHVEVLSQDSGMRGCWYRASVIKKH------KDKVKVRYNDVQDAADEVNLLEEWVLASRV  448 (691)
Q Consensus       388 ~~FkvGs~VEVls~e~G~rGsWF~AtVlk~~------~~k~~V~Y~dL~deeDg~~~L~EwV~~srv  448 (691)
                      ..|.+|+.|.|.-.+    |.|++|+||+..      ...|+|-|..+      ...+-|||+..|+
T Consensus        11 ~~~~vG~~~~v~~~d----g~~~~AkVl~~r~~~~~~~~~yyVHY~g~------n~r~DEWV~~~ri   67 (133)
T d1wgsa_          11 VTVEIGETYLCRRPD----STWHSAEVIQSRVNDQEGREEFYVHYVGF------NRRLDEWVDKNRL   67 (133)
T ss_dssp             CCCCTTSEEEEEETT----TEEEEEEEEEEEEETTTTEEEEEEECTTT------CSSCCEEECTTTS
T ss_pred             CCEECCCEEEEEECC----CCEEEEEEEEEEECCCCCCEEEEEECCCC------CCCCCEECCHHHC
T ss_conf             667149899999389----98867789998863668875999971688------6325301278880

>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor domain-containing protein 3, TDRD3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.50  E-value=0.038  Score=30.46  Aligned_cols=55  Identities=25%  Similarity=0.296  Sum_probs=40.5

Q ss_pred             CCCCCCEEEEEECCCCCCEEEEEEEEEEEC--CCEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             768999899963399851126989999841--987999967655532467540899963203588644644468743379
Q 005537          389 YLKVGSHVEVLSQDSGMRGCWYRASVIKKH--KDKVKVRYNDVQDAADEVNLLEEWVLASRVAAPDQLGLRVSGRRIVRP  466 (691)
Q Consensus       389 ~FkvGs~VEVls~e~G~rGsWF~AtVlk~~--~~k~~V~Y~dL~deeDg~~~L~EwV~~srva~Pd~lgiR~~gR~~IRP  466 (691)
                      .+++|+.+-+...+   -|.||||+|++..  ++.+.|.|.|+-+        .|.|+.                ..|||
T Consensus         2 ~wkvG~~c~A~~~~---D~~wYRA~I~~i~~~~~~~~V~fvDYGn--------~e~v~~----------------~~lr~   54 (60)
T d2d9ta1           2 VWKPGDECFALYWE---DNKFYRAEVEALHSSGMTAVVKFTDYGN--------YEEVLL----------------SNIKP   54 (60)
T ss_dssp             CCCTTCEEEEECTT---TCCEEEEEEEEECSSSSEEEEEETTTTE--------EEEEEG----------------GGEEE
T ss_pred             CCCCCCEEEEEECC---CCCEEEEEEEEECCCCCEEEEEEECCCC--------EEEECH----------------HHCCC
T ss_conf             46769999999987---8979999999982789999999987999--------899838----------------99192


Q ss_pred             CCCC
Q ss_conf             9998
Q 005537          467 SPES  470 (691)
Q Consensus       467 ~PP~  470 (691)
                      .|+.
T Consensus        55 l~~e   58 (60)
T d2d9ta1          55 VQTE   58 (60)
T ss_dssp             CCCC
T ss_pred             CCCC
T ss_conf             7988

>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Survival motor neuron protein 1, smn
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.075  Score=28.53  Aligned_cols=48  Identities=25%  Similarity=0.388  Sum_probs=28.2

Q ss_pred             CCCCCCCEEEEEECCCCCCEEEEEEEEEEE--CCCEEEEEECCCCCCCCCCCCEEEEEECC
Q ss_conf             776899989996339985112698999984--19879999676555324675408999632
Q 005537          388 QYLKVGSHVEVLSQDSGMRGCWYRASVIKK--HKDKVKVRYNDVQDAADEVNLLEEWVLAS  446 (691)
Q Consensus       388 ~~FkvGs~VEVls~e~G~rGsWF~AtVlk~--~~~k~~V~Y~dL~deeDg~~~L~EwV~~s  446 (691)
                      ..+++|+.+-....++   |.||||+|++.  ..+.+.|.|.|+-+        .|.|+.+
T Consensus         2 ~~wkvG~~C~A~~s~D---g~wYRA~I~~v~~~~~~~~V~fvDYGn--------~e~V~~~   51 (59)
T d1mhna_           2 QQWKVGDKCSAIWSED---GCIYPATIASIDFKRETCVVVYTGYGN--------REEQNLS   51 (59)
T ss_dssp             CCCCTTCEEEEECTTT---SCEEEEEEEEEETTTTEEEEEETTTTE--------EEEEEGG
T ss_pred             CCCCCCCEEEEEECCC---CCEEEEEEEEECCCCCEEEEEEEECCC--------EEEEEHH
T ss_conf             7688699999998878---989899999974889999999980899--------8998899

>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Survival motor neuron protein 1, smn
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.59  E-value=0.13  Score=26.95  Aligned_cols=51  Identities=20%  Similarity=0.297  Sum_probs=44.3

Q ss_pred             CCCCCCEEEEEEC-C-CEEEEEEEEEC-CCCEEEEEECCCCEEEEEECCCCCCE
Q ss_conf             5789998989607-9-74789999974-89659999478970899714997120
Q 005537          478 AIDVGTIVDAWWH-D-GWWEGIVIQKD-SEDKLHVYFPGEKQKSIFSRGDLRHS  528 (691)
Q Consensus       478 ~~~vGd~VDAw~~-D-GWWEGvV~~v~-~~~~~~VyFpGe~e~l~f~~~dLRps  528 (691)
                      .|++|+.+-|-+. | .|..++|..+. ..+.+.|+|.+=|..-.+..++|||.
T Consensus         3 ~wkvG~~C~A~~s~Dg~wYRA~I~~v~~~~~~~~V~fvDYGn~e~V~~~~l~~~   56 (59)
T d1mhna_           3 QWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSP   56 (59)
T ss_dssp             CCCTTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGCBCT
T ss_pred             CCCCCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEEECCCEEEEEHHHCCCC
T ss_conf             688699999998878989899999974889999999980899899889997698

>d1wjqa_ b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 3 protein, L3MBTL3 (KIAA1798) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: MBT repeat
domain: Lethal(3)malignant brain tumor-like 3 protein, L3MBTL3 (KIAA1798)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.52  E-value=0.12  Score=27.09  Aligned_cols=53  Identities=17%  Similarity=0.287  Sum_probs=41.2

Q ss_pred             CCCCCCCCCCEEEEEECCCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEC
Q ss_conf             9987768999899963399851126989999841987999967655532467540899963
Q 005537          385 PSSQYLKVGSHVEVLSQDSGMRGCWYRASVIKKHKDKVKVRYNDVQDAADEVNLLEEWVLA  445 (691)
Q Consensus       385 ~~p~~FkvGs~VEVls~e~G~rGsWF~AtVlk~~~~k~~V~Y~dL~deeDg~~~L~EwV~~  445 (691)
                      ..+..|++|.++|+.....  -..+-.|||++..+.+++|+|+...++      -.+|+..
T Consensus         9 ~P~~~F~vGmKLEavD~~~--~~~i~vAtV~~v~g~~l~v~~DG~~~~------~d~w~~~   61 (107)
T d1wjqa_           9 KPPHGFQKKMKLEVVDKRN--PMFIRVATVADTDDHRVKVHFDGWNNC------YDYWIDA   61 (107)
T ss_dssp             CCSSSCCSSCEEEEECTTC--TTCEEEEEEEEECSSCEEEECSSSCGG------GCEEECT
T ss_pred             CCCCCCCCCCEEEEECCCC--CEEEEEEEEEEEECCEEEEEECCCCCC------CCEEEEC
T ss_conf             8986574799999886889--816898999887899999997889987------8989988

>d1oz2a3 b.34.9.3 (A:422-527) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: MBT repeat
domain: Lethal(3)malignant brain tumor-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.38  E-value=0.14  Score=26.65  Aligned_cols=54  Identities=15%  Similarity=0.247  Sum_probs=42.0

Q ss_pred             CCCCCCCCCCEEEEEECCCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECC
Q ss_conf             99877689998999633998511269899998419879999676555324675408999632
Q 005537          385 PSSQYLKVGSHVEVLSQDSGMRGCWYRASVIKKHKDKVKVRYNDVQDAADEVNLLEEWVLAS  446 (691)
Q Consensus       385 ~~p~~FkvGs~VEVls~e~G~rGsWF~AtVlk~~~~k~~V~Y~dL~deeDg~~~L~EwV~~s  446 (691)
                      ..+..|++|.++|+...  .--..+..|||+++.+.+++|+|+...++      -..|+...
T Consensus        23 ~~~~~F~~GmklEavd~--~~~~~i~vAtV~~v~g~~l~v~~DG~~~~------~dfw~~~~   76 (106)
T d1oz2a3          23 RPPHSFLVNMKLEAVDR--RNPALIRVASVEDVEDHRIKIHFDGWSHG------YDFWIDAD   76 (106)
T ss_dssp             CCCCCCCTTCEEEEECS--SSTTCEEEEEEEEECSSEEEEEETTBCGG------GCEEEETT
T ss_pred             CCCCCCCCCCEEEEECC--CCCCEEEEEEEEEEECCEEEEEECCCCCC------CCEEEECC
T ss_conf             67456404889998738--89862898999987899999997888887------99999899

>d2buda1 b.34.13.3 (A:367-454) Putative histone acetyltransferase MOF {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo barrel domain
domain: Putative histone acetyltransferase MOF
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.86  E-value=0.047  Score=29.86  Aligned_cols=70  Identities=21%  Similarity=0.359  Sum_probs=42.9

Q ss_pred             CCCCCCCEE-EE-EECCCCCCEEEEEEEEEEEC-------CCEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf             776899989-99-63399851126989999841-------9879999676555324675408999632035886446444
Q 005537          388 QYLKVGSHV-EV-LSQDSGMRGCWYRASVIKKH-------KDKVKVRYNDVQDAADEVNLLEEWVLASRVAAPDQLGLRV  458 (691)
Q Consensus       388 ~~FkvGs~V-EV-ls~e~G~rGsWF~AtVlk~~-------~~k~~V~Y~dL~deeDg~~~L~EwV~~srva~Pd~lgiR~  458 (691)
                      +.|.+|..+ || +++.  ..|.|++|+||+..       ...|+|-|..+      ...+-|||+.+|+.....-    
T Consensus         5 ~~~~v~~~~~kVy~~~r--~Dg~~~~AkIi~~R~~~~~~g~~eYyVHY~g~------n~r~DEWV~~~ri~~~~de----   72 (88)
T d2buda1           5 QKIDISENPDKIYFIRR--EDGTVHRGQVLQSRTTENAAAPDEYYVHYVGL------NRRLDGWVGRHRISDNADD----   72 (88)
T ss_dssp             SSCCSTTCTTSCEEEEC--TTSCEEEEEEEEEECTTTCSSCCEEEEECSSS------CTTTCEEEETTTEESCHHH----
T ss_pred             CCEEECCCCCEEEEEEC--CCCCEEEEEEEEEEECCCCCCCEEEEEEECCC------CCHHHHCCCHHHHHHHHHH----
T ss_conf             52541224674999987--78988657999988258889853999980474------6416653398675320131----


Q ss_pred             CCCCCCCCCCC
Q ss_conf             68743379999
Q 005537          459 SGRRIVRPSPE  469 (691)
Q Consensus       459 ~gR~~IRP~PP  469 (691)
                      .+..++-|.||
T Consensus        73 ~~~~t~~p~~p   83 (88)
T d2buda1          73 LGGITVLPAPP   83 (88)
T ss_dssp             HHTTTCCCCCC
T ss_pred             CCCCEECCCCC
T ss_conf             07612068999

>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: P100 co-activator, SND1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.80  E-value=0.18  Score=26.00  Aligned_cols=45  Identities=29%  Similarity=0.381  Sum_probs=34.2

Q ss_pred             CCCCCEEEEEECCCCCCEEEEEEEEEEEC-CCEEEEEECCCCCCCCCCCCEEEEEECC
Q ss_conf             68999899963399851126989999841-9879999676555324675408999632
Q 005537          390 LKVGSHVEVLSQDSGMRGCWYRASVIKKH-KDKVKVRYNDVQDAADEVNLLEEWVLAS  446 (691)
Q Consensus       390 FkvGs~VEVls~e~G~rGsWF~AtVlk~~-~~k~~V~Y~dL~deeDg~~~L~EwV~~s  446 (691)
                      -++|+.+-+... +   |.||||.|+... .+++.|.|-|+-+        .|.|+.+
T Consensus        26 p~~G~~c~a~~~-D---~~wyRa~V~~~~~~~~~~V~~vDyG~--------~~~v~~~   71 (90)
T d2hqxa1          26 PRRGEFCIAKFV-D---GEWYRARVEKVESPAKIHVFYIDYGN--------REVLPST   71 (90)
T ss_dssp             CCTTCEEEEECT-T---SCEEEEEEEEEEETTEEEEEETTTCC--------EEEECGG
T ss_pred             CCCCCEEEEEEC-C---CCEEEEEEEEECCCCEEEEEEEECCC--------CEEEEHH
T ss_conf             877999999973-8---98989999996799959999994898--------7998779

>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor domain-containing protein 3, TDRD3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.80  E-value=0.13  Score=26.88  Aligned_cols=52  Identities=13%  Similarity=0.060  Sum_probs=44.5

Q ss_pred             CCCCCCEEEEEE--CCCEEEEEEEEECC-CCEEEEEECCCCEEEEEECCCCCCEE
Q ss_conf             578999898960--79747899999748-96599994789708997149971202
Q 005537          478 AIDVGTIVDAWW--HDGWWEGIVIQKDS-EDKLHVYFPGEKQKSIFSRGDLRHSQ  529 (691)
Q Consensus       478 ~~~vGd~VDAw~--~DGWWEGvV~~v~~-~~~~~VyFpGe~e~l~f~~~dLRps~  529 (691)
                      .|++|+.+=|-+  ++.|..++|.++.. ++.+.|+|-+-|....++.++|||=.
T Consensus         2 ~wkvG~~c~A~~~~D~~wYRA~I~~i~~~~~~~~V~fvDYGn~e~v~~~~lr~l~   56 (60)
T d2d9ta1           2 VWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQ   56 (60)
T ss_dssp             CCCTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGGGEEECC
T ss_pred             CCCCCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCEEEECHHHCCCCC
T ss_conf             4676999999998789799999999827899999999879998998389919279

>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: P100 co-activator, SND1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.60  E-value=0.28  Score=24.72  Aligned_cols=52  Identities=21%  Similarity=0.376  Sum_probs=44.9

Q ss_pred             CCCCCCCEEEEEECC-CEEEEEEEEECCCCEEEEEECCCCEEEEEECCCCCCE
Q ss_conf             357899989896079-7478999997489659999478970899714997120
Q 005537          477 WAIDVGTIVDAWWHD-GWWEGIVIQKDSEDKLHVYFPGEKQKSIFSRGDLRHS  528 (691)
Q Consensus       477 ~~~~vGd~VDAw~~D-GWWEGvV~~v~~~~~~~VyFpGe~e~l~f~~~dLRps  528 (691)
                      ..+++|+.+=|-+.| .|.-|+|+.+.+++.+.|+|-+-|....+..++||+=
T Consensus        24 ~~p~~G~~c~a~~~D~~wyRa~V~~~~~~~~~~V~~vDyG~~~~v~~~~l~~l   76 (90)
T d2hqxa1          24 YAPRRGEFCIAKFVDGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTL   76 (90)
T ss_dssp             CCCCTTCEEEEECTTSCEEEEEEEEEEETTEEEEEETTTCCEEEECGGGEECC
T ss_pred             CCCCCCCEEEEEECCCCEEEEEEEEECCCCEEEEEEEECCCCEEEEHHHEEEC
T ss_conf             57877999999973898989999996799959999994898799877990487

>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor and KH domain-containing protein TDRKH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.43  E-value=0.12  Score=27.18  Aligned_cols=49  Identities=22%  Similarity=0.364  Sum_probs=34.0

Q ss_pred             CCCCCCCCEEEEEECCCCCCEEEEEEEEEEEC-CCEEEEEECCCCCCCCCCCCEEEEEECC
Q ss_conf             87768999899963399851126989999841-9879999676555324675408999632
Q 005537          387 SQYLKVGSHVEVLSQDSGMRGCWYRASVIKKH-KDKVKVRYNDVQDAADEVNLLEEWVLAS  446 (691)
Q Consensus       387 p~~FkvGs~VEVls~e~G~rGsWF~AtVlk~~-~~k~~V~Y~dL~deeDg~~~L~EwV~~s  446 (691)
                      +....+|+.+-+...++   |.||||.|++.. .+++.|.|-|+-+        +|.|+..
T Consensus        23 ~~~~~~G~~~~a~~~~d---~~wyRa~V~~~~~~~~~~V~~vDyG~--------~~~v~~~   72 (97)
T d2diqa1          23 DLTVHVGDIVAAPLPTN---GSWYRARVLGTLENGNLDLYFVDFGD--------NGDCPLK   72 (97)
T ss_dssp             CCCCCTTCEEEECCTTT---CSCEEEEECCCCSSSCEEEEETTTCC--------EEEECGG
T ss_pred             CCCCCCCCEEEEEECCC---CEEEEEEEEEECCCCEEEEEEEEECC--------EEEEEHH
T ss_conf             68898899999998879---94999999998899979999996099--------8998679

>d1wjsa_ b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 3 protein, L3MBTL3 (KIAA1798) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: MBT repeat
domain: Lethal(3)malignant brain tumor-like 3 protein, L3MBTL3 (KIAA1798)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.99  E-value=0.33  Score=24.23  Aligned_cols=53  Identities=19%  Similarity=0.372  Sum_probs=40.4

Q ss_pred             CCCCCCCCCEEEEEECCCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECC
Q ss_conf             9877689998999633998511269899998419879999676555324675408999632
Q 005537          386 SSQYLKVGSHVEVLSQDSGMRGCWYRASVIKKHKDKVKVRYNDVQDAADEVNLLEEWVLAS  446 (691)
Q Consensus       386 ~p~~FkvGs~VEVls~e~G~rGsWF~AtVlk~~~~k~~V~Y~dL~deeDg~~~L~EwV~~s  446 (691)
                      .+..|++|.++|+.....  ...-..|||+++.+.+++|+|+...++      -..|+...
T Consensus        10 ~~~~F~~GmKLEavd~~~--~~~i~vAtV~~v~g~~l~v~~DG~~~~------~dfw~~~~   62 (127)
T d1wjsa_          10 NKNGFKVGMKLEGVDPEH--QSVYCVLTVAEVCGYRIKLHFDGYSDC------YDFWVNAD   62 (127)
T ss_dssp             CCCSCCTTCEEEEEETTE--EEEEEEEEEEEEETTEEEEEETTSCGG------GCEEEETT
T ss_pred             CCCCCCCCCEEEEECCCC--CCEEEEEEEEEEECCEEEEEECCCCCC------CCEEEECC
T ss_conf             988886388899876889--845898999888899999996888887------89899889

>d2f5ka1 b.34.13.3 (A:6-88) Mortality factor 4-like protein 1, MRG15 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo barrel domain
domain: Mortality factor 4-like protein 1, MRG15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.85  E-value=0.41  Score=23.64  Aligned_cols=53  Identities=25%  Similarity=0.298  Sum_probs=38.0

Q ss_pred             CCCCCCCEEEEEECCCCCCEEEEEEEEEEEC----CCEEEEEECCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf             7768999899963399851126989999841----987999967655532467540899963203588
Q 005537          388 QYLKVGSHVEVLSQDSGMRGCWYRASVIKKH----KDKVKVRYNDVQDAADEVNLLEEWVLASRVAAP  451 (691)
Q Consensus       388 ~~FkvGs~VEVls~e~G~rGsWF~AtVlk~~----~~k~~V~Y~dL~deeDg~~~L~EwV~~srva~P  451 (691)
                      ..|.+|+.|-+.     ..+.+|.|+|++..    ...|+|.|.-.      ....-|||+.+|+...
T Consensus         4 ~~f~~ge~Vlc~-----~~~~lYeAkil~~~~~~~~~~Y~VHy~GW------n~~~DeWv~~~ril~~   60 (83)
T d2f5ka1           4 PKFQEGERVLCF-----HGPLLYEAKCVKVAIKDKQVKYFIHYSGW------NKNWDEWVPESRVLKY   60 (83)
T ss_dssp             CSCCTTCEEEEE-----SSSSEEEEEEEEEEEETTEEEEEEEETTS------CGGGCEEEEGGGEEES
T ss_pred             CCCCCCCEEEEE-----ECCEEEEEEEEEEEECCCCEEEEEEECCC------CCCCCCCCCHHHCCCC
T ss_conf             855789989999-----78905874899999758946899986664------8742540274332037

>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor and KH domain-containing protein TDRKH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.73  E-value=0.28  Score=24.69  Aligned_cols=52  Identities=25%  Similarity=0.376  Sum_probs=45.2

Q ss_pred             CCCCCCCEEEEEE--CCCEEEEEEEEECCCCEEEEEECCCCEEEEEECCCCCCE
Q ss_conf             3578999898960--797478999997489659999478970899714997120
Q 005537          477 WAIDVGTIVDAWW--HDGWWEGIVIQKDSEDKLHVYFPGEKQKSIFSRGDLRHS  528 (691)
Q Consensus       477 ~~~~vGd~VDAw~--~DGWWEGvV~~v~~~~~~~VyFpGe~e~l~f~~~dLRps  528 (691)
                      ..+.+|+.+=|.+  ++.|.-|+|.++.+++.+.|+|-+-|....+...+||+-
T Consensus        24 ~~~~~G~~~~a~~~~d~~wyRa~V~~~~~~~~~~V~~vDyG~~~~v~~~~l~~l   77 (97)
T d2diqa1          24 LTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRAL   77 (97)
T ss_dssp             CCCCTTCEEEECCTTTCSCEEEEECCCCSSSCEEEEETTTCCEEEECGGGCEEC
T ss_pred             CCCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEEEEECCEEEEEHHHHHCC
T ss_conf             889889999999887994999999998899979999996099899867994612

>d1khca_ b.34.9.2 (A:) DNA methyltransferase DNMT3B {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: PWWP domain
domain: DNA methyltransferase DNMT3B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.63  E-value=0.45  Score=23.35  Aligned_cols=56  Identities=18%  Similarity=0.253  Sum_probs=44.9

Q ss_pred             CCCCCCCCEEEEEECC-CEEEEEEEEE-------CCCCEEEEEECCCCEEEEEECCCCCCEEEE
Q ss_conf             5357899989896079-7478999997-------489659999478970899714997120263
Q 005537          476 SWAIDVGTIVDAWWHD-GWWEGIVIQK-------DSEDKLHVYFPGEKQKSIFSRGDLRHSQEW  531 (691)
Q Consensus       476 ~~~~~vGd~VDAw~~D-GWWEGvV~~v-------~~~~~~~VyFpGe~e~l~f~~~dLRps~eW  531 (691)
                      ...|.+||.|=|=..+ .||.|.|+..       ...+.+.|+|-|.+...-+...+|.|-.+.
T Consensus         6 g~~f~~GdlVWaK~~g~pwWPg~V~~~~~~~~~~~~~~~~~V~fFGd~~~~wv~~~~L~pf~~~   69 (137)
T d1khca_           6 DKEFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMPGMRWVQWFGDGKFSEISADKLVALGLF   69 (137)
T ss_dssp             SSSCCTTCEEEEEETTTEEEEEEEECGGGTTSCCCCTTEEEEEETTTCCEEEEEGGGCEETTSH
T ss_pred             CCCCCCCCEEEEECCCCCCCCEEECCHHHHCCCCCCCCCEEEEEECCCCEEEECHHHCCCCHHH
T ss_conf             8757668889984689799986872755530226888818899835898798658988560788

>d2nlua1 b.34.9.2 (A:1-100) Hepatoma-derived growth factor, HDGF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: PWWP domain
domain: Hepatoma-derived growth factor, HDGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.50  E-value=0.42  Score=23.51  Aligned_cols=55  Identities=20%  Similarity=0.309  Sum_probs=42.3

Q ss_pred             CCCCCCCCEEEEEECC-CEEEEEEEEEC------CCCEEEEEECCCCEEEEEECCCCCCEEE
Q ss_conf             5357899989896079-74789999974------8965999947897089971499712026
Q 005537          476 SWAIDVGTIVDAWWHD-GWWEGIVIQKD------SEDKLHVYFPGEKQKSIFSRGDLRHSQE  530 (691)
Q Consensus       476 ~~~~~vGd~VDAw~~D-GWWEGvV~~v~------~~~~~~VyFpGe~e~l~f~~~dLRps~e  530 (691)
                      ...|.+||.|=|=..+ .||.|+|+...      ..+.|.|.|-|+.+..-+...+|.+-.+
T Consensus         7 ~~~f~~GdlVWaK~~gypwWPa~V~~~~~~~~~~~~~~~~V~Ffg~~~~~wv~~~~l~~f~e   68 (100)
T d2nlua1           7 QKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKDLFPYEE   68 (100)
T ss_dssp             CCCCSTTCEEEEEETTEEEEEEEEECCTTSSCSCCCSCEEEEETTTTEEEEECGGGEECHHH
T ss_pred             CCCCCCCCEEEEECCCCCCCCEEEECCHHHCCCCCCCEEEEEECCCCCEEEECHHHCCCHHH
T ss_conf             77587688999966897999879836023034677787999986899879983888547034

>d1oi1a2 b.34.9.3 (A:140-243) Scml2 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: MBT repeat
domain: Scml2 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.36  E-value=0.47  Score=23.20  Aligned_cols=51  Identities=18%  Similarity=0.324  Sum_probs=39.7

Q ss_pred             CCCCCCCEEEEEECCCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECC
Q ss_conf             77689998999633998511269899998419879999676555324675408999632
Q 005537          388 QYLKVGSHVEVLSQDSGMRGCWYRASVIKKHKDKVKVRYNDVQDAADEVNLLEEWVLAS  446 (691)
Q Consensus       388 ~~FkvGs~VEVls~e~G~rGsWF~AtVlk~~~~k~~V~Y~dL~deeDg~~~L~EwV~~s  446 (691)
                      ..|++|.++|+.....  ......|||++..+.+++|+|+...++      -..|+...
T Consensus        31 ~~F~~GmkLEavD~~~--~~~i~vAtV~~v~g~~l~v~~dg~~~~------~dfw~~~~   81 (104)
T d1oi1a2          31 NNFKVGMKLEAIDKKN--PYLICPATIGDVKGDEVHITFDGWSGA------FDYWCKYD   81 (104)
T ss_dssp             CCCCTTCEEEEECTTS--TTCEEEEEEEEEETTEEEEEETTSCST------TCEEEETT
T ss_pred             CCCCCCCEEEEECCCC--CCEEEEEEEEEEECCEEEEEECCCCCC------CCEEEECC
T ss_conf             7777898999787889--986999999998899999996899986------59899889

>d1oz2a1 b.34.9.3 (A:204-313) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: MBT repeat
domain: Lethal(3)malignant brain tumor-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.78  E-value=0.53  Score=22.90  Aligned_cols=51  Identities=14%  Similarity=0.335  Sum_probs=40.7

Q ss_pred             CCCCCCCEEEEEECCCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECC
Q ss_conf             77689998999633998511269899998419879999676555324675408999632
Q 005537          388 QYLKVGSHVEVLSQDSGMRGCWYRASVIKKHKDKVKVRYNDVQDAADEVNLLEEWVLAS  446 (691)
Q Consensus       388 ~~FkvGs~VEVls~e~G~rGsWF~AtVlk~~~~k~~V~Y~dL~deeDg~~~L~EwV~~s  446 (691)
                      ..|++|.++|+....  --.....|||+++.+.+++|+|+...++      -..|+...
T Consensus        33 ~~f~~GmklEavd~~--~~~~i~vAtV~~v~g~~l~v~~dg~~~~------~dfw~~~~   83 (110)
T d1oz2a1          33 NGFKLGMKLEGIDPQ--HPSMYFILTVAEVCGYRLRLHFDGYSEC------HDFWVNAN   83 (110)
T ss_dssp             CCCCTTCEEEEEETT--EEEEEEEEEEEEEETTEEEEEETTSCGG------GCEEEETT
T ss_pred             CCCCCCCEEEEECCC--CCCEEEEEEEEEEECCEEEEEECCCCCC------CCEEEECC
T ss_conf             723578889877577--8874898999998899999998998887------89899889

>d1oz2a2 b.34.9.3 (A:314-421) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: MBT repeat
domain: Lethal(3)malignant brain tumor-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.74  E-value=0.62  Score=22.41  Aligned_cols=52  Identities=19%  Similarity=0.275  Sum_probs=39.0

Q ss_pred             CCCCCCCCEEEEEECCCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECC
Q ss_conf             877689998999633998511269899998419879999676555324675408999632
Q 005537          387 SQYLKVGSHVEVLSQDSGMRGCWYRASVIKKHKDKVKVRYNDVQDAADEVNLLEEWVLAS  446 (691)
Q Consensus       387 p~~FkvGs~VEVls~e~G~rGsWF~AtVlk~~~~k~~V~Y~dL~deeDg~~~L~EwV~~s  446 (691)
                      ...|++|.++|+.....-  ..--.|||+++.+.+++|+|+...++      -.+|+...
T Consensus        29 ~~~F~~GmkLEavd~~~~--~~i~vAtV~~v~g~~~~l~~dg~~~~------~d~w~~~~   80 (108)
T d1oz2a2          29 PLGFQVGMKLEAVDRMNP--SLVCVASVTDVVDSRFLVHFDNWDDT------YDYWCDPS   80 (108)
T ss_dssp             CTTCCTTCEEEEECTTST--TCEEEEEEEEEETTEEEEEETTSCGG------GCEEECTT
T ss_pred             CCCCCCCCEEEEECCCCC--EEEEEEEEEEEECCEEEEEECCCCCC------CCEEEECC
T ss_conf             777777999998748998--07887999998899999997789986------68899789

>d1oi1a1 b.34.9.3 (A:33-135) Scml2 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: MBT repeat
domain: Scml2 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.65  E-value=0.63  Score=22.37  Aligned_cols=52  Identities=19%  Similarity=0.289  Sum_probs=40.1

Q ss_pred             CCCCCCCCEEEEEECCCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECC
Q ss_conf             877689998999633998511269899998419879999676555324675408999632
Q 005537          387 SQYLKVGSHVEVLSQDSGMRGCWYRASVIKKHKDKVKVRYNDVQDAADEVNLLEEWVLAS  446 (691)
Q Consensus       387 p~~FkvGs~VEVls~e~G~rGsWF~AtVlk~~~~k~~V~Y~dL~deeDg~~~L~EwV~~s  446 (691)
                      ...|++|.++|+.....  -..+..|||++..+.+++|+|+...++      -..|+.+.
T Consensus        28 ~~~f~~GmklEavd~~~--~~~~~vAtV~~v~g~~~~l~~dG~~~~------~dfw~~~~   79 (103)
T d1oi1a1          28 VNDFKVGMKLEARDPRN--ATSVCIATVIGITGARLRLRLDGSDNR------NDFWRLVD   79 (103)
T ss_dssp             CCCCCTTCEEEEEETTE--EEEEEEEEEEEEETTEEEEEETTSCTT------CCEEEETT
T ss_pred             CCCCCCCCEEEEECCCC--CCEEEEEEEEEEECCEEEEEECCCCCC------CCEEEECC
T ss_conf             76741587897075778--972898999985387899997889986------89999889

>d1wjra_ b.34.9.3 (A:) Scm-like with four MBT domains protein 2, SFMBT2 (KIAA1617) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: MBT repeat
domain: Scm-like with four MBT domains protein 2, SFMBT2 (KIAA1617)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.61  E-value=0.78  Score=21.76  Aligned_cols=52  Identities=21%  Similarity=0.504  Sum_probs=39.3

Q ss_pred             CCCCCCCEEEEEECCCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEC
Q ss_conf             7768999899963399851126989999841987999967655532467540899963
Q 005537          388 QYLKVGSHVEVLSQDSGMRGCWYRASVIKKHKDKVKVRYNDVQDAADEVNLLEEWVLA  445 (691)
Q Consensus       388 ~~FkvGs~VEVls~e~G~rGsWF~AtVlk~~~~k~~V~Y~dL~deeDg~~~L~EwV~~  445 (691)
                      ..|++|.++|+.-...  -..--.|||++..+.+++|+|+.+.++ +   ...-|+..
T Consensus        10 ~~f~vGmkLEavdp~~--~~~i~vAtV~~v~g~~l~v~~DG~~~~-~---~~dfw~~~   61 (127)
T d1wjra_          10 DLITVGSLIELQDSQN--PFQYWIVSVIENVGGRLRLRYVGLEDT-E---SYDQWLFY   61 (127)
T ss_dssp             HHCCTTCEEEEECSSC--SSCEEEEECCCEETTEEEECBTTCSSC-C---SSCEEEET
T ss_pred             CCCCCCCEEEEECCCC--CCEEEEEEEEEEECCEEEEEEECCCCC-C---CCCEEEEC
T ss_conf             1168899999876999--974899999997799999998167898-7---78899988

>d1h3za_ b.34.9.2 (A:) Hypothetical protein SPBC215.07c {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: PWWP domain
domain: Hypothetical protein SPBC215.07c
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=81.90  E-value=1.3  Score=20.38  Aligned_cols=52  Identities=17%  Similarity=0.171  Sum_probs=36.9

Q ss_pred             CCCCCCCEEEEEECCC-EEEEEEEEE-------------CCCCEEEEEECCCCEEEEEECCCCCCE
Q ss_conf             3578999898960797-478999997-------------489659999478970899714997120
Q 005537          477 WAIDVGTIVDAWWHDG-WWEGIVIQK-------------DSEDKLHVYFPGEKQKSIFSRGDLRHS  528 (691)
Q Consensus       477 ~~~~vGd~VDAw~~DG-WWEGvV~~v-------------~~~~~~~VyFpGe~e~l~f~~~dLRps  528 (691)
                      ..|.+||.|=|=..+- ||.|+|+..             .....|.|+|-|.++..-+...+|.|-
T Consensus         4 ~~f~~GdlVWaK~~gyPwWPa~I~~~~~~~~~~~~~~~~~~~~~~~V~FFg~~~~aWv~~~~l~pf   69 (108)
T d1h3za_           4 VNYKPGMRVLTKMSGFPWWPSMVVTESKMTSVARKSKPKRAGTFYPVIFFPNKEYLWTGSDSLTPL   69 (108)
T ss_dssp             CCCCTTCEEEEEETTEEEEEEEECCGGGCCHHHHHTCCCSSSCEEEEEETTTTCCEEEEGGGEEEC
T ss_pred             CCCCCCCEEEEECCCCCCCCEEEECHHHCCHHHHHCCCCCCCCEEEEEEECCCCEEEECHHHCCCC
T ss_conf             768888899997579899887972731287888742456789858889837997899768888577