Citrus Sinensis ID: 005581

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690
Protein Sequence
MSKLLFLHTPHFTPKKLHTKTFSAIVTQSLTPLHCKCRLLSFSLNTTTTRSNSHLLSQIHYYHRSFSVRSFDDSSSETKIQEPQQQAVVNEDYESRGKSKDEDEYPSGEFEYEKFSAWKIFTVKLRMLVAFPWERVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVDRTLKELLQDLTFSDGVQARMDGILFQRLEEVACGNPILTLIKDYLSSL
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEcccccccccccccccccHHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHHHHHHHHHcccEEEEEccccccccEEEEccccEEEEccccEEEEccccEEHHHHHHHHHHccccEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHcccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEEEEEEccccccccccccccHHHHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHHHHHHcccccEEEEccccccccccHHcccccEEEEEcccccccccEEcccccHHHHHHHcccEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccccHHHHHHcccccccccHHHHHHHHHHHcccccccEEEEEEcccccccHHHHHHHHHHccccHHHHHHHHHHHcccccccHHccccHHHHHHHHcccccHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHcccccccccccHHHHHHHHHcccccEEEEEcccccccccccccccHHccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccEEEEcccHHHHHEEEEEEEEcccccccccccEEEEEcccEEEccccccccccccHHHHHHHHHHHHccccEEEEEEEcccccccHHHHHHHHHHHHHHHHcccEEEEEEcccccccEEEEEEccEEEEcccccEEEEcccccHHHHHHHHHHccccEEEEEEccccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHccccHHcccHHHHHHHHHHHHcccccccccEEEHHHHHHcccccccccccccEEEEEEEEEEEEccccccccccccccHHHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHHHHHHHccccEEEEcccccccccEEEEccccEEEEcccccccHHHHHcccccHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccHHHHHHcccHHccccHHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcHHHHHcccccccccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mskllflhtphftpkklhtkTFSAIVtqsltplhckcrllsfslnttttrsnshLLSQIHYYHrsfsvrsfddsssetkiqepqqqavvnedyesrgkskdedeypsgefeyekfsAWKIFTVKLRMLVAfpwervrkgsVLTMKLRGQIADQLKSrfssglslpqICENFVkaaydprivGIYLHieplscgwgkveEIRRHVVDFkksgkfiigyvpvcgekEYYLACAceelyappsayfSLYGLTVQASFLGgvlekvgiepqvqrigkyksagdqltrkTMSEENCEMLTALLDNIYgnwldkvsstkgkrKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERlgvqkdknlpmvdyrkysgvrrwtlgltgggdqIAVIRASgsisrvrsplslsssgiiGEQLIEKIRKVRESKRYKAAIIRIdspggdalaSDLMWREIRLLseskpviasmsdvaasGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAeqrpfrpdeAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQgrvwtgndaaSRGLVDALGGFSRAVAIAKQkanipedrQVTLVemskpsptlpeILSSVGNSIAGVDRTLKELLQDLTFSDGVQARMDGILFQRleevacgnPILTLIKDYLSSL
Flexible Loop (DISEMBL)
mskllflhtphftpkklhtKTFSAIVTQSLTPLHCKCRLLSFSLNTTTTRSNSHLLSQIHYYHRSFSVRSFDDSSSEtkiqepqqqavvnedyesrgkskdedeypsgefEYEKFSAWKIFTVKLRMLVAFPWERVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVgiepqvqrigkyksagdqltrKTMSEENCEMLTALLDNIYGNWLDKvsstkgkrkedierfindgvykverlkeegfitnvlydDEVISMLKerlgvqkdknlpmvdyrKYSGVRRWtlgltgggdqIAVIRasgsisrvrsplslsssgiigeqLIEKIRKVRESKRYKAaiiridspggdalASDLMWREIRLLseskpviasMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKqkanipedrqVTLVEMSKPSPTLPEILSSVGNSIAGVDRTLKELLQDLTFSDGVQARMDGILFQRleevacgnpILTLIKDYLSSL
Low Complexity Region (SEG)
MSKLLFLHTPHFTPKKLHTKTFSAIVTQSLTPLHCKCRLLSFSLNTTTTRSNSHLLSQIHYYHrsfsvrsfddsssETKIQEPQQQAVVNEDYESRGKSKDEDEYPSGEFEYEKFSAWKIFTVKLRMLVAFPWERVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGsisrvrsplslsssgiigEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVaasggyymamaagTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVDRTLKELLQDLTFSDGVQARMDGILFQRLEEVACGNPILTLIKDYLSSL
Disordered region (IsUnstruct)
***LLFLHTPHFTPKKLHTKTFSAIVTQSLTPLHCKCRLLSFSLNTTTTRSNSHLLSQIHYYHRSFSV*****************************************FEYEKFSAWKIFTVKLRMLVAFPWERVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYK*************ENCEMLTALLDNIYGNWLDKVSSTK**RKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRV********SGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAE**********LFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQ*************************LSSVGNSIAGVDRTLKELLQDLTFSDGVQARMDGILFQRLEEVACGNPILTLIKDYL***
Disordered Region (DISOPRED)
**KLL**HTPHFTPKKLHTKTFSAIVTQSLT******************************************************************************FEYEKFSAWKIFTVKLRMLVA*****VR**SVLTMKLRGQ****************QICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSIS****************QLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKANIPEDRQVTLVEMSKPSPTLPEILS***********TLKELLQDLTFSDGVQARMDGILFQRLEEVACGNPILTLIKDYLSSL
Disordered Region (DISEMBL)
MSKLLFLHTPHFTPKKLHTKTFSAIVTQSLTPLHCKCRLLSFSLNTTTTRSNSHLLSQIHYYHRSFSVR*************************************SGEFEYEKFSAWKIFTVKLRMLVAFPWERVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVDRTLKELLQDLTFSDGVQARMDGILFQRLEEVACGNPILTLIKDYLSSL
Disordered Region (DISPRO)
*SKLLFLHTPHFTPKKLHTKTFSAIVTQSLTPLHCKCRLLSFSLNTTTTRSNSHLLSQIHYYHRSFSVRSFDD******************************EYPSGEFEYEKFSAWKIFTVKLRMLVAFPWERVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGVQKDKNLPMVDYRKYSGVRRWTLG*TGGGDQIAVIRASGSISRVRSPLS***SGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVDRTLKELLQDLTFSDGVQARMDGILFQRLEEVACGNPILTLIKDYLSSL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSKLLFLHTPHFTPKKLHTKTFSAIVTQSLTPLHCKCRLLSFSLNTTTTRSNSHLLSQIHYYHRSFSVRSFDDSSSETKIQEPQQQAVVNEDYESRGKSKDEDEYPSGEFEYEKFSAWKIFTVKLRMLVAFPWERVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVDRTLKELLQDLTFSDGVQARMDGILFQRLEEVACGNPILTLIKDYLSSL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	690	2.2.26 [Sep-21-2011]
P73689	610	Protease 4 OS=Synechocyst	N/A	no	0.681	0.770	0.332	2e-60
P45243	615	Protease 4 OS=Haemophilus	yes	no	0.633	0.710	0.275	4e-42
P08395	618	Protease 4 OS=Escherichia	N/A	no	0.660	0.737	0.277	2e-40
Q8Z6F3	618	Protease 4 OS=Salmonella	N/A	no	0.657	0.734	0.282	6e-37
Q55682	277	Putative protease slr0021	N/A	no	0.331	0.826	0.334	3e-29
Q9K809	331	Putative signal peptide p	yes	no	0.346	0.722	0.298	4e-23
O34525	335	Putative signal peptide p	yes	no	0.313	0.644	0.3	1e-21
Q9X480	344	Putative signal peptide p	yes	no	0.340	0.683	0.273	4e-20
Q8YFI5	736	Na(+)/H(+) antiporter Nha	yes	no	0.282	0.264	0.353	8e-20
Q2YMB3	736	Na(+)/H(+) antiporter Nha	yes	no	0.282	0.264	0.353	9e-20

>sp|P73689|SPPA_SYNY3 Protease 4 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sppA PE=3 SV=1

 Score =  234 bits (596), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 166/499 (33%), Positives = 257/499 (51%), Gaps = 29/499 (5%)

Query: 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSC--GWGKVEEIRRHVVDFKKSGKFIIGYVP 219
           L L  +     KAA D RIV + +     +   G+  + E+++ ++ FK+SGK I+ Y  
Sbjct: 80  LPLRTVVNAIEKAAEDDRIVALLIDGRRSNQVDGYANLSEVQQALIKFKQSGKKIVAYGL 139

Query: 220 VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279
              E  YYLA   + +   P     + GL  Q  F  G L K GI  Q  R+G YK A +
Sbjct: 140 NYSELGYYLAATADTILINPMGGVEINGLGAQPIFFTGALAKAGIGVQTLRVGSYKGAVE 199

Query: 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFIND-GVYKVERLKEEG 338
             TR+ +S EN +    LL+ I+  +L  V++ +      ++   +D G+   +    E 
Sbjct: 200 PYTRENLSPENRQQQQLLLNQIWQIYLTSVANNRSLTVPQLQAIASDQGLLFADIALREK 259

Query: 339 FITNVLYDDEVISMLKERLGV-----------QKDKNLPMVDYRKYSGVRRWTLGLTGGG 387
            +  V Y DEV++ LK+  GV           ++DK    +   +Y  ++ W        
Sbjct: 260 LVDKVTYWDEVLAELKQA-GVWINDPEKIEEQEEDKEFRKISLAEYHRLQNWETENHDQD 318

Query: 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA 447
            +IA++   GSI   R     +   I G++  E +R +R+    KA ++RI+SPGG A A
Sbjct: 319 PKIAIVYLEGSIVNGRG----TWENIGGDRYGELLRTIRQDDDIKAVVLRINSPGGSASA 374

Query: 448 SDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLG 507
           +D++WRE+ LL   KPVI SM +VAASGGY++A A   I+A+  T+TGSIGV +  FN+ 
Sbjct: 375 ADIIWREVELLQAQKPVIISMGNVAASGGYWIATAGEKIVAQPNTVTGSIGVFSILFNVE 434

Query: 508 KLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTV 567
            L +++G N + ++ G+ A V  +  +P    E  +F +S    Y++F DK   +R+++ 
Sbjct: 435 NLGDRLGLNWDEVATGELANV-GSSIKPKTELELAIFQRSVDQVYEIFLDKVGRARNLSP 493

Query: 568 DKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKANIPEDRQVTLVEMSKPSPTL 627
             ++  AQGRVWTG  A   GLVD LGG   AV +A  +A + E  QV      K  PT 
Sbjct: 494 TALDSVAQGRVWTGLAAQKVGLVDQLGGLQTAVNLAAAQAELGEQWQV------KEYPT- 546

Query: 628 PEILSSV--GNSIAGVDRT 644
           P  L+S+   N I G+  T
Sbjct: 547 PRGLNSLLWNNLIHGLTET 565

Digestion of the cleaved signal peptides. This activity is necessary to maintain proper secretion of mature proteins across the membrane.
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: -

>sp|P45243|SPPA_HAEIN Protease 4 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=sppA PE=1 SV=1

 Score =  173 bits (438), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 125/453 (27%), Positives = 224/453 (49%), Gaps = 16/453 (3%)

Query: 173 KAAYDPRIVGIYLHIEPL-SCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACA 231
           +A  DP+I G+ L +          ++ I   +  FK +GK +I Y     + +YYLA  
Sbjct: 98  QAEDDPKIKGLVLDLNYFEGADLPALDFIGGAISHFKDAGKPVIAYADNYSQGQYYLASF 157

Query: 232 CEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENC 291
            +E+Y        ++GL+ +  +   +L+K+ + P + R+G YKSA +   R  MS E  
Sbjct: 158 ADEIYLNSIGSVDIHGLSQENLYFKEMLDKLAVTPHIFRVGTYKSAVEPFLRNDMSAEAK 217

Query: 292 EMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLK--------EEGFITNV 343
             +   L  ++ N++  VS  +  +K+ I       + +++ LK        + G +T+V
Sbjct: 218 ANMQRWLGEMWNNYVLSVSENRNIKKDRILPNAKQYLAELKALKGNSTAYAQQRGLVTDV 277

Query: 344 LYDDEVISMLKERLGVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVR 403
           +   ++   L    G   D    ++++  Y       L      ++IAV+   G+I  + 
Sbjct: 278 VTRLDLDKKLSALFGKGSDGKANLIEFDDYLTQLPDRLEHYNVPNKIAVVNVEGTI--ID 335

Query: 404 SPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSE-SK 462
                 ++G  G+ +   +RK  +    KA I+R++SPGG A AS+++ +E   L +  K
Sbjct: 336 GESDEENAG--GDTIARILRKAHDDNSVKAVILRVNSPGGSAFASEIIRQETENLQKIGK 393

Query: 463 PVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISR 522
           PVI SM  +AASGGY+++  A  I+A++ T+TGSIG+ T         +KIG + + +S 
Sbjct: 394 PVIVSMGAMAASGGYWISSTADYIIADSNTITGSIGIFTMFPTFENSIKKIGVHADGVST 453

Query: 523 GKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGN 582
            + A   A    P      +++    ++ Y  F +  +  R ++  ++++ AQG+VW G+
Sbjct: 454 TELANTSAFS--PLAKPVQDIYQTEIEHGYDRFLEIVSKGRQLSKTQVDKLAQGQVWLGS 511

Query: 583 DAASRGLVDALGGFSRAVAIAKQKANIPEDRQV 615
           DA   GLVD +G F+ AV  A+Q  N  +D  V
Sbjct: 512 DAFQNGLVDEIGSFNEAVNKAEQLVNQRQDTAV 544

Digestion of the cleaved signal peptides. This activity is necessary to maintain proper secretion of mature proteins across the membrane.

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P08395|SPPA_ECOLI Protease 4 OS=Escherichia coli (strain K12) GN=sppA PE=1 SV=2

 Score =  168 bits (425), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 134/483 (27%), Positives = 225/483 (46%), Gaps = 27/483 (5%)

Query: 140 SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCG-WGKVE 198
           S L+ +L G  +D+L+       SL  I     +A  D  I GI + ++  + G    ++
Sbjct: 78  SKLSRQLLGASSDRLQEN-----SLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQ 132

Query: 199 EIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGV 258
            I + + +F+ SGK +        + +YYLA    +++  P     L+G      +   +
Sbjct: 133 YIGKALKEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSL 192

Query: 259 LEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE 318
           L+K+ +   V R+G YKSA +   R  MS    E  +  +  ++ N+L+ V++ +    E
Sbjct: 193 LDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAE 252

Query: 319 DI--------ERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGVQK-DKNLPMVD 369
            +        E     G    +   E   +  +    E+   L +  G  K DKN   + 
Sbjct: 253 QVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDKNYRAIS 312

Query: 370 YRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESK 429
           Y  Y+            GD I V+ A+G+I         +   + G+    +IR  R   
Sbjct: 313 YYDYA-----LKTPADTGDSIGVVFANGAIMDGEE----TQGNVGGDTTAAQIRDARLDP 363

Query: 430 RYKAAIIRIDSPGGDALASDLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILA 488
           + KA ++R++SPGG   AS+++  E+       KPV+ SM  +AASGGY+++  A  I+A
Sbjct: 364 KVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVA 423

Query: 489 ENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSA 548
              TLTGSIG+      +    + IG + + +S    A+V  +  R   P+   +   S 
Sbjct: 424 NPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADV--SITRALPPEAQLMMQLSI 481

Query: 549 QNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKAN 608
           +N YK F    A +R  T +++++ AQG VWTG DA + GLVD+LG F  AVA A + A 
Sbjct: 482 ENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAK 541

Query: 609 IPE 611
           + +
Sbjct: 542 VKQ 544

Digestion of the cleaved signal peptides. This activity is necessary to maintain proper secretion of mature proteins across the membrane.

Escherichia coli (strain K12) (taxid: 83333)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q8Z6F3|SPPA_SALTI Protease 4 OS=Salmonella typhi GN=sppA PE=3 SV=1

 Score =  156 bits (394), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 136/481 (28%), Positives = 227/481 (47%), Gaps = 27/481 (5%)

Query: 142 LTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLS-CGWGKVEEI 200
           L  +L G  +D+L+       SL  I     +A  D  I GI L ++  +      +  I
Sbjct: 80  LGRQLFGASSDRLQEN-----SLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYI 134

Query: 201 RRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLE 260
            + + +F+ SGK +        + +YYLA    +++  P     L+G      +   +L+
Sbjct: 135 GKALREFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLD 194

Query: 261 KVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDI 320
           K+ +   V R+G YKSA +   R  MS    E  +  +  ++ N+L  VS+ +    + +
Sbjct: 195 KLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQL 254

Query: 321 ---ERFINDGVYKVERLKEEGFITNVLYDD-----EVISMLKERLGVQK-DKNLPMVDYR 371
               + I DG+  V     +  + + L D      +V   L ++ G  K + N   + Y 
Sbjct: 255 FPGAQAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFGWSKTENNYRAISYY 314

Query: 372 KYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRY 431
            YS     T   TGG   IAVI A+G+I         +   + G+    +IR  R   + 
Sbjct: 315 DYS---LKTPADTGG--TIAVIFANGAIMDGEE----TPGNVGGDTTASQIRDARLDPKV 365

Query: 432 KAAIIRIDSPGGDALASDLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAEN 490
           KA ++R++SPGG   AS+++  E+       KPV+ SM  +AASGGY+++  A  I+A  
Sbjct: 366 KAIVLRVNSPGGSVNASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASP 425

Query: 491 LTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQN 550
            TLTGSIG+      +      IG + + +S    A++  +  +   P+  ++   S + 
Sbjct: 426 STLTGSIGIFGVINTVENSLSSIGVHSDGVSTSPLADI--SMTKALSPEVQQMMQLSIEY 483

Query: 551 AYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKANIP 610
            YK F    A +R  T +++++ AQG VWTG DA + GLVD+LG F  AVA A + A + 
Sbjct: 484 GYKRFITLVADARKRTPEQIDKIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKLK 543

Query: 611 E 611
           +
Sbjct: 544 Q 544

Digestion of the cleaved signal peptides. This activity is necessary to maintain proper secretion of mature proteins across the membrane.

Salmonella typhi (taxid: 90370)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q55682|Y021_SYNY3 Putative protease slr0021 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0021 PE=3 SV=1

 Score =  130 bits (328), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 131/239 (54%), Gaps = 10/239 (4%)

Query: 421 KIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASGGYYMA 480
           K  K  E K+Y A ++RIDSPGG  + S  ++ +++ LSE   V+AS  +++ASGG Y+A
Sbjct: 32  KALKTVEEKKYPALLVRIDSPGGTVVDSQEIYTKLKQLSEKIKVVASFGNISASGGVYIA 91

Query: 481 MAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDE 540
           M    I+A + T+TGSIGV+    NL +L EK+G + ++I  G Y ++L+ + R   P+E
Sbjct: 92  MGCPHIMANSGTITGSIGVILRGNNLERLLEKVGVSFKVIKSGPYKDILSFD-RELLPEE 150

Query: 541 AELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAV 600
             +      ++Y  F    A  R++ V+K++E+A GR++TG  A   GLVD LG    A 
Sbjct: 151 QSILQALIDDSYGQFVSTVAAGRNLAVEKVKEFADGRIFTGQQALELGLVDRLGTEEDAR 210

Query: 601 AIAKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVDRTLKELLQDLTFSDGVQ 659
             A   A +  D+ V L  +  P P +          + G D  L+ +  +L  ++ ++
Sbjct: 211 QWAATLAGLDPDK-VELDTIEDPKPLV--------RRLTGGDSQLQTMADNLGLTESLK 260

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q9K809|SPPA_BACHD Putative signal peptide peptidase SppA OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=sppA PE=3 SV=1

 Score =  110 bits (275), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 124/248 (50%), Gaps = 9/248 (3%)

Query: 366 PMVDYRKYSGV---RRWTLGLTGG--GDQIAVIRASGSISRVRSPLSLSSSGIIGEQ-LI 419
           P VD  ++ G     + T+  TG   G  IA++  SG I    S  SL ++G+   +  +
Sbjct: 29  PAVDVDEWVGTGTSYKQTIVETGTDFGKSIAILELSGVIQDTGSAPSLLNTGVYHHRDFL 88

Query: 420 EKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSES--KPVIASMSDVAASGGY 477
           +++ K  E       I+++++PGG  L S  + +++  + +   KPV  SM ++AASGGY
Sbjct: 89  KQLEKAGEDPNIAGIILQVNTPGGGVLESAEIHKQVEEIVQDSEKPVYVSMGNMAASGGY 148

Query: 478 YMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFR 537
           Y++  A  I A   T+TGSIGV+    ++  L E +G        G Y ++L ++ R   
Sbjct: 149 YISAPATKIYAHPQTITGSIGVIMQSIDISGLAENLGIEFNTFKSGPYKDIL-SQTREVT 207

Query: 538 PDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFS 597
            +E ++        Y  F       R M+  ++ E A GR++TG+ A + GLVD LGG  
Sbjct: 208 DEEEDILQTLVDEMYDEFVRVIVDGRGMSETEVRELADGRIYTGSQAVATGLVDELGGLD 267

Query: 598 RAVAIAKQ 605
             +   K+
Sbjct: 268 DVIESMKE 275

Digestion of the cleaved signal peptides.

Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) (taxid: 272558)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|O34525|SPPA_BACSU Putative signal peptide peptidase SppA OS=Bacillus subtilis (strain 168) GN=sppA PE=1 SV=1

 Score =  105 bits (262), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 114/220 (51%), Gaps = 4/220 (1%)

Query: 389 QIAVIRASGSISRVRSPLSL-SSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA 447
           +IAV+  SG+I       SL  + G      ++ + + ++ K  K  +++++SPGG    
Sbjct: 59  KIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYE 118

Query: 448 SDLMWREIRLLSES--KPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFN 505
           S  + +++  + +   KP+  SM  +AASGGYY++ AA  I A   TLTGS+GV+    N
Sbjct: 119 SAEIHKKLEEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVN 178

Query: 506 LGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSM 565
             KL +K+G + E I  G + ++++   R    +E  +      N+Y+ F D  +  R M
Sbjct: 179 YSKLADKLGISFETIKSGAHKDIMSP-SREMTKEEKNIMQSMVDNSYEGFVDVISKGRGM 237

Query: 566 TVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQ 605
              ++++ A GRV+ G  A    LVD LG +   +   K+
Sbjct: 238 PKAEVKKIADGRVYDGRQAKKLNLVDELGFYDDTITAMKK 277

Digestion of cleaved signal peptides (By similarity). Required for efficient processing of precursors under conditions of hyper-secretion.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q9X480|SPPA_ENTFC Putative signal peptide peptidase SppA OS=Enterococcus faecium GN=sppA PE=3 SV=1

 Score =  100 bits (249), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 124/249 (49%), Gaps = 14/249 (5%)

Query: 416 EQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSE-SKPVIASMSDVAAS 474
           +  + +++K++E K  K  ++ ++SPGG    S  + +E+  + +   P+  +  + AAS
Sbjct: 91  QNFLTQLKKIQEDKAVKGVLLEVNSPGGGIYESAEIAKEMAKIKKLDIPIYTAFKNTAAS 150

Query: 475 GGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQR 534
           GGYY++  +  I A   T TGSIGV+    N   L EK+G        G   ++++ + +
Sbjct: 151 GGYYISAGSDKIFATEETTTGSIGVIISGLNYSGLLEKLGVTDATYKSGALKDMMSPQHK 210

Query: 535 PFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALG 594
           P   +E ++  +   +AY  F +  A  R+M  + ++E A GR++ GN A   GLVD +G
Sbjct: 211 P-SEEENKVIQEFVMSAYDRFVNVVAKGRNMDTNAVKELADGRIYDGNQAVENGLVDQIG 269

Query: 595 GFSRAVAIAKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIA---GVDRTLKE---- 647
               A+   K++  + +    T++E    +       S +GN IA   G+  T  +    
Sbjct: 270 YSEDALDSLKKEKKLTD---ATVIEYKNDTTGFAS--SWLGNKIAEWQGLKATTSDRVIS 324

Query: 648 LLQDLTFSD 656
           + + L FSD
Sbjct: 325 VFEKLGFSD 333

Digestion of the cleaved signal peptides.

Enterococcus faecium (taxid: 1352)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q8YFI5|NHAA_BRUME Na(+)/H(+) antiporter NhaA OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=nhaA PE=3 SV=2

 Score = 99.4 bits (246), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 76/215 (35%), Positives = 110/215 (51%), Gaps = 20/215 (9%)

Query: 389 QIAVIRASGSI----SRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGD 444
           +I V+R  G+I    + +R  LSL+S+  I E       K    K   A  I I+SPGG 
Sbjct: 465 EIPVVRLHGAIMTGGTSLRPTLSLASTAGILE-------KAFADKHAPAVAISINSPGGA 517

Query: 445 ALASDLMWREIRLLS--ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTG 502
            + S L++R IR L+    K V   + DVAASGGY +A+A   I+A+  ++ GSIGVV+ 
Sbjct: 518 PVQSRLIYRRIRDLAAEHQKKVFVFVEDVAASGGYMIALAGDEIIADPSSIVGSIGVVSA 577

Query: 503 KFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELF--AKSAQ-NAYKLFRDKA 559
            F   +L +KIG  + + + G     L     PF+P++AE     K+ Q   +  F D  
Sbjct: 578 SFGFPELLKKIGVERRVYTAGSNKVTL----DPFQPEKAEDIERLKALQLEIHATFIDMV 633

Query: 560 AFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALG 594
              R+  +    +   G  WTG  AAS GL+D LG
Sbjct: 634 KERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLG 668

Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons.

Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) (taxid: 224914)

>sp|Q2YMB3|NHAA_BRUA2 Na(+)/H(+) antiporter NhaA OS=Brucella abortus (strain 2308) GN=nhaA PE=3 SV=2

 Score = 99.4 bits (246), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 76/215 (35%), Positives = 110/215 (51%), Gaps = 20/215 (9%)

Query: 389 QIAVIRASGSI----SRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGD 444
           +I V+R  G+I    + +R  LSL+S+  I E       K    K   A  I I+SPGG 
Sbjct: 465 EIPVVRLHGAIMTGGTSLRPTLSLASTAGILE-------KAFADKHAPAVAISINSPGGA 517

Query: 445 ALASDLMWREIRLLS--ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTG 502
            + S L++R IR L+    K V   + DVAASGGY +A+A   I+A+  ++ GSIGVV+ 
Sbjct: 518 PVQSRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEIIADPSSIVGSIGVVSA 577

Query: 503 KFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELF--AKSAQ-NAYKLFRDKA 559
            F   +L +KIG  + + + G     L     PF+P++AE     K+ Q   +  F D  
Sbjct: 578 SFGFPELLKKIGVERRVYTAGSNKVTL----DPFQPEKAEDIERLKALQLEIHATFIDMV 633

Query: 560 AFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALG 594
              R+  +    +   G  WTG  AAS GL+D LG
Sbjct: 634 KERRAGKLGDNPDLFSGLFWTGTTAASLGLIDGLG 668

Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons.

Brucella abortus (strain 2308) (taxid: 359391)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	690
225455748	686	PREDICTED: protease 4-like [Vitis vinife	0.989	0.995	0.757	0.0
449440874	684	PREDICTED: protease 4-like [Cucumis sati	0.908	0.916	0.785	0.0
224135361	691	predicted protein [Populus trichocarpa]	0.897	0.895	0.799	0.0
356508467	683	PREDICTED: protease 4-like [Glycine max]	0.944	0.954	0.726	0.0
312283239	682	unnamed protein product [Thellungiella h	0.984	0.995	0.705	0.0
297839273	676	hypothetical protein ARALYDRAFT_476539 [	0.976	0.997	0.698	0.0
42563213	677	signal peptide peptidase [Arabidopsis th	0.975	0.994	0.689	0.0
6690270	680	putative protease SppA [Arabidopsis thal	0.975	0.989	0.678	0.0
356562658	649	PREDICTED: protease 4-like [Glycine max]	0.857	0.912	0.770	0.0
357450793	670	Protease [Medicago truncatula] gi|355484	0.908	0.935	0.732	0.0

>gi|225455748|ref|XP_002268894.1| PREDICTED: protease 4-like [Vitis vinifera]

 Score = 1067 bits (2760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/693 (75%), Positives = 590/693 (85%), Gaps = 10/693 (1%)

Query: 1   MSKLLFLHTPHFTPKKLHTKTFSAIVTQSLTPLHCKCRLLSFSLNTTTTRSNSHLLSQIH 60
           MSKLL  H  H T   +H ++ +AI+++ L  +     L      +    + S+    +H
Sbjct: 1   MSKLL--HGCHLT--SIHRRSCAAILSKPLRSIRVVSSLQPQFSPSKPQNALSYFSPSLH 56

Query: 61  YYHRSFSVRSFDDSSSETK---IQEPQQQAVVNEDYESRGKSKDEDEYPSGEFEYEKFSA 117
              R+ S+R+FD SSSETK   + E   +    +D  +   +   +EYP+G+FE+++ S 
Sbjct: 57  --RRNLSLRAFD-SSSETKSDVVSEEAGEKDYKDDDGALSSTSLAEEYPTGDFEFKEMSG 113

Query: 118 WKIFTVKLRMLVAFPWERVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYD 177
           W  F VKLRML+AFPWERVRKGSV TMKLRGQI+DQLKSRFSSGLSLPQICENF+KAAYD
Sbjct: 114 WMSFVVKLRMLIAFPWERVRKGSVFTMKLRGQISDQLKSRFSSGLSLPQICENFIKAAYD 173

Query: 178 PRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYA 237
           PRI GIYLHIEPLSCGWGKVEEIRRH++DFKKSGKFI+ Y P CGEKEYYL  AC+ELYA
Sbjct: 174 PRISGIYLHIEPLSCGWGKVEEIRRHILDFKKSGKFIVAYAPACGEKEYYLGSACDELYA 233

Query: 238 PPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTAL 297
           PPSAYFSLYGLTVQASFLGGV EKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTAL
Sbjct: 234 PPSAYFSLYGLTVQASFLGGVFEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTAL 293

Query: 298 LDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357
           LDNIYGNWLDK+SS KGK++ED E FIN+GVY+VE+LKEEG+ITN+ YDDEVIS+LKERL
Sbjct: 294 LDNIYGNWLDKISSAKGKKREDTENFINEGVYQVEKLKEEGWITNINYDDEVISILKERL 353

Query: 358 GVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQ 417
           G  KDKNLPMVDYRKYS VR+WTLGL+GG DQIAVIRASGSISRVRSP S+  SGI  EQ
Sbjct: 354 GQPKDKNLPMVDYRKYSKVRKWTLGLSGGKDQIAVIRASGSISRVRSPFSIPGSGITSEQ 413

Query: 418 LIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASGGY 477
            IEKIR VR+SKRYKA IIRIDSPGGDALASDLMWREIRLL+ SKPVIASMSDVAASGGY
Sbjct: 414 FIEKIRSVRDSKRYKAVIIRIDSPGGDALASDLMWREIRLLAASKPVIASMSDVAASGGY 473

Query: 478 YMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFR 537
           YMAM AGTI+AENLTLTGSIGVVTGKFNLG LYEKIGFNKEIISRG++AE+ AAEQRPFR
Sbjct: 474 YMAMGAGTIVAENLTLTGSIGVVTGKFNLGTLYEKIGFNKEIISRGRFAELTAAEQRPFR 533

Query: 538 PDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFS 597
           PDEAELFAKSAQNAYK FRDKAAFSRSM VDKMEE AQGRVWTG DAASRGLVDA+GG S
Sbjct: 534 PDEAELFAKSAQNAYKQFRDKAAFSRSMAVDKMEENAQGRVWTGKDAASRGLVDAIGGLS 593

Query: 598 RAVAIAKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVDRTLKELLQDLTFSDG 657
           RAVAIAKQKA+IP+DR VTLVE+S+PSPT+ EIL+ +G+SI GV+RTLKELLQDLTFS+G
Sbjct: 594 RAVAIAKQKADIPQDRPVTLVELSRPSPTVSEILTGIGSSIVGVERTLKELLQDLTFSNG 653

Query: 658 VQARMDGILFQRLEEVACGNPILTLIKDYLSSL 690
           VQARMDGILFQ+LEE +  NPI TL+KDYLSSL
Sbjct: 654 VQARMDGILFQKLEEASDSNPIFTLVKDYLSSL 686

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440874|ref|XP_004138209.1| PREDICTED: protease 4-like [Cucumis sativus] gi|449477130|ref|XP_004154939.1| PREDICTED: protease 4-like [Cucumis sativus]

 Score = 1040 bits (2689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/630 (78%), Positives = 566/630 (89%), Gaps = 3/630 (0%)

Query: 63  HRSFSVRSFDDSSSETKIQEPQQQAVVNEDYESRG--KSKDEDEYPSGEFEYEKFSAWKI 120
            R FS+R+FDD++ ETK  E ++    NE   S    +++DED YPSGEFE++KF  W+ 
Sbjct: 56  RRCFSLRAFDDNAPETKRVEKEETDASNEAPMSSDVVRTRDED-YPSGEFEFQKFGPWRS 114

Query: 121 FTVKLRMLVAFPWERVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRI 180
           F VKL+MLVAFPWERVRKGSVLTMKLRGQI+DQLKSRFSSGLSLPQICENFVKAAYDPRI
Sbjct: 115 FLVKLKMLVAFPWERVRKGSVLTMKLRGQISDQLKSRFSSGLSLPQICENFVKAAYDPRI 174

Query: 181 VGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPS 240
            GIYL IE L+CGWGKVEEIRRH++DFKKSGKF++ Y+P C EKEYYLACACEE+YAPPS
Sbjct: 175 SGIYLQIEALNCGWGKVEEIRRHILDFKKSGKFVVAYIPTCQEKEYYLACACEEIYAPPS 234

Query: 241 AYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDN 300
           AY SL+GLTVQASFL G+ +KVGIEPQV+RIGKYKSAGDQL R+ MSEENCEMLT LLDN
Sbjct: 235 AYVSLFGLTVQASFLRGIFDKVGIEPQVERIGKYKSAGDQLARRNMSEENCEMLTTLLDN 294

Query: 301 IYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGVQ 360
           IYGNWLDKVSST GK+K+D+E FIN+GVY++E+LKE+G+ITN+ Y+DEV+SML ERLG+ 
Sbjct: 295 IYGNWLDKVSSTNGKKKDDVENFINEGVYQIEKLKEDGWITNIQYEDEVLSMLSERLGLP 354

Query: 361 KDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIE 420
           KDK +PMVDYRKYS VR+WT+GL+GGGDQIAVIRA GSI+RVRSPLS+ SSGIIGEQ IE
Sbjct: 355 KDKKVPMVDYRKYSRVRQWTVGLSGGGDQIAVIRAGGSITRVRSPLSVPSSGIIGEQFIE 414

Query: 421 KIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASGGYYMA 480
           KIR VRESKR+KAAIIRIDSPGGDALASDLMWREIRLL+ SKPV+ASM+DVAASGGYYMA
Sbjct: 415 KIRTVRESKRFKAAIIRIDSPGGDALASDLMWREIRLLAASKPVVASMADVAASGGYYMA 474

Query: 481 MAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDE 540
           MAAGTI+AE+LTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRG++AE+LAAEQRPFRPDE
Sbjct: 475 MAAGTIVAEDLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGRFAELLAAEQRPFRPDE 534

Query: 541 AELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAV 600
           AELFAKSAQNAYK FRDKAAFSRSMTVD+ME+ AQGRVWTG DAASRGLVDA+GGFSRAV
Sbjct: 535 AELFAKSAQNAYKQFRDKAAFSRSMTVDEMEKVAQGRVWTGKDAASRGLVDAIGGFSRAV 594

Query: 601 AIAKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVDRTLKELLQDLTFSDGVQA 660
           AIAK KANI +D QV LVE+S+PSPTLPEILS VG++I GVDRT+K+LLQDL+  +GVQA
Sbjct: 595 AIAKLKANISQDSQVNLVELSRPSPTLPEILSGVGSTIIGVDRTMKDLLQDLSLGEGVQA 654

Query: 661 RMDGILFQRLEEVACGNPILTLIKDYLSSL 690
           RM+GI+ QR+E  + GNPIL  IKDY +SL
Sbjct: 655 RMEGIMLQRMEGFSYGNPILNFIKDYFTSL 684

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135361|ref|XP_002322054.1| predicted protein [Populus trichocarpa] gi|222869050|gb|EEF06181.1| predicted protein [Populus trichocarpa]

 Score = 1033 bits (2670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/627 (79%), Positives = 561/627 (89%), Gaps = 8/627 (1%)

Query: 64  RSFSVRSFDDSSSETKIQEPQQQAVVNEDYESRGKSKDEDEYPSGEFEYEKFSAWKIFTV 123
           R+FSVR+FD   S+T+ +E ++++          K  DED YPSGEF++++  AW  F V
Sbjct: 73  RTFSVRAFDSDDSKTEQEEEKKESF-------HVKKSDED-YPSGEFDFQEIGAWNRFLV 124

Query: 124 KLRMLVAFPWERVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGI 183
           KL+ML+AFPWERVRKGSVLTMKLRGQI+DQLKSRFSSGLSLPQICENF+KAAYDPRI GI
Sbjct: 125 KLKMLIAFPWERVRKGSVLTMKLRGQISDQLKSRFSSGLSLPQICENFIKAAYDPRISGI 184

Query: 184 YLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYF 243
           YLHI+ L+CGW KVEE+RRH+ +FKKSGKF++ Y+P C EKEYYLA AC++LY PP+AYF
Sbjct: 185 YLHIDGLNCGWAKVEELRRHIFNFKKSGKFVVAYLPACREKEYYLASACDDLYLPPTAYF 244

Query: 244 SLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYG 303
           S YG TVQA+FL GV E VGI+P VQRIGKYKSAGDQLTRK+MS+ENCEMLTA+LDNIYG
Sbjct: 245 SFYGFTVQAAFLAGVFENVGIQPDVQRIGKYKSAGDQLTRKSMSKENCEMLTAILDNIYG 304

Query: 304 NWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGVQKDK 363
           NWLDKVSSTKGK+ ED++ FIN+GVYKVERLKEEG ITN+ YDDEVISMLKE++GVQKDK
Sbjct: 305 NWLDKVSSTKGKKIEDMKNFINEGVYKVERLKEEGLITNMHYDDEVISMLKEKVGVQKDK 364

Query: 364 NLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIR 423
            LPMVDY KYS VR WTLGLTGG D IA+IRASGSISRV+SPLSLS SGIIGEQLIEKIR
Sbjct: 365 VLPMVDYSKYSRVRNWTLGLTGGRDLIAIIRASGSISRVKSPLSLSGSGIIGEQLIEKIR 424

Query: 424 KVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAA 483
           + RESK+YKAAIIRIDSPGGDALASDLMWREIRLL+ESKPVIASMSDVAASGGYYMAMAA
Sbjct: 425 QARESKKYKAAIIRIDSPGGDALASDLMWREIRLLAESKPVIASMSDVAASGGYYMAMAA 484

Query: 484 GTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAEL 543
            TI+AENLTLTGSIGVVTGKF+LGKLYEKIGFNKEIISRGKYAE+LAA+QRP RPDEAEL
Sbjct: 485 DTIVAENLTLTGSIGVVTGKFSLGKLYEKIGFNKEIISRGKYAELLAADQRPLRPDEAEL 544

Query: 544 FAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIA 603
           FAKSAQNAY+ FRDKAAFSRSM VDKMEE AQGRVWTG DAASRGLVDA+GGFSRAVAIA
Sbjct: 545 FAKSAQNAYEQFRDKAAFSRSMPVDKMEEVAQGRVWTGQDAASRGLVDAIGGFSRAVAIA 604

Query: 604 KQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVDRTLKELLQDLTFSDGVQARMD 663
           KQKANIP+DRQV LVE+S+PSPTLPEILS +G+S+ G +RTLKELLQDL FS+GVQARMD
Sbjct: 605 KQKANIPQDRQVMLVELSRPSPTLPEILSGIGSSVVGAERTLKELLQDLAFSNGVQARMD 664

Query: 664 GILFQRLEEVACGNPILTLIKDYLSSL 690
           GILFQ LEE +  NPILTLIKDYL SL
Sbjct: 665 GILFQGLEEASYDNPILTLIKDYLGSL 691

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508467|ref|XP_003522978.1| PREDICTED: protease 4-like [Glycine max]

 Score =  994 bits (2570), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/676 (72%), Positives = 569/676 (84%), Gaps = 24/676 (3%)

Query: 26  VTQSLTPLHCKCRLLSFSLNTTTTRSNSHLLSQIHYYHRSF----------SVRSFDDSS 75
            + S + L  +CR   FSL+         LLS++H+   SF           +R+FD SS
Sbjct: 21  TSSSASALQFQCR---FSLS---------LLSRLHHSPTSFRSLVRRTRDLPLRAFDSSS 68

Query: 76  -SETKIQEPQQQAVVNEDYESRGKSKDEDEYPSGEFEYEKFSAWKIFTVKLRMLVAFPWE 134
            + ++ +E  ++     D  S  +  DED YPSG+F++E  + W+ F VKL+MLVAFPWE
Sbjct: 69  DANSEEKEEVKENEEGVDNRSGSRIADED-YPSGQFDFEPVTGWRSFLVKLKMLVAFPWE 127

Query: 135 RVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGW 194
           RV+KGSVLTMKLRGQI+DQ+KSRFS GLSLPQICENF+KAAYDPRI GIYLHI+ L+CGW
Sbjct: 128 RVQKGSVLTMKLRGQISDQVKSRFSPGLSLPQICENFLKAAYDPRISGIYLHIDSLNCGW 187

Query: 195 GKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASF 254
           GKVEEIRRH++DFKKSGKF++ YVP+C EKEYYLA ACEE+YAPPSAYFSL+GLTVQASF
Sbjct: 188 GKVEEIRRHILDFKKSGKFVLAYVPLCQEKEYYLASACEEIYAPPSAYFSLFGLTVQASF 247

Query: 255 LGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKG 314
           L GVL+ +GIEPQV+RIGKYKSAGDQL R+TMSEENCEMLT LLDNIY NWLDKVSS KG
Sbjct: 248 LKGVLDNIGIEPQVERIGKYKSAGDQLARRTMSEENCEMLTTLLDNIYTNWLDKVSSAKG 307

Query: 315 KRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGVQKDKNLPMVDYRKYS 374
           K +EDIE FIN+GVY+V++LKEEG I+N+ YDDE+ +MLKERLGV+ DK+L MVDYRKYS
Sbjct: 308 KTREDIENFINEGVYQVDKLKEEGLISNINYDDEITAMLKERLGVKSDKDLRMVDYRKYS 367

Query: 375 GVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAA 434
            VR+WT+G+ GG + IA+IRASGSISRV S  S+SSSGII E+ IEKIR VRESK++KAA
Sbjct: 368 RVRKWTVGIPGGKELIAIIRASGSISRVESQFSVSSSGIIAEKFIEKIRTVRESKKFKAA 427

Query: 435 IIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLT 494
           IIRIDSPGGDALASDLMWREIRLL+ SKPVIASMSDVAASGGYYMAM A  I+AE+LTLT
Sbjct: 428 IIRIDSPGGDALASDLMWREIRLLAASKPVIASMSDVAASGGYYMAMGADVIVAESLTLT 487

Query: 495 GSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKL 554
           GSIGVVTGKFNLGKLYEKIGFNKEIISRG+YAE+LAAEQRPFRPDEAELFAKSAQ+AYK 
Sbjct: 488 GSIGVVTGKFNLGKLYEKIGFNKEIISRGRYAELLAAEQRPFRPDEAELFAKSAQHAYKQ 547

Query: 555 FRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKANIPEDRQ 614
           FRDKAA SRSMTV+KMEE+AQGRVWTG DAA RGLVDA+GG SRA+AIAK KA+IP+DRQ
Sbjct: 548 FRDKAASSRSMTVEKMEEFAQGRVWTGKDAALRGLVDAIGGLSRAIAIAKMKADIPQDRQ 607

Query: 615 VTLVEMSKPSPTLPEILSSVGNSIAGVDRTLKELLQDLTFSDGVQARMDGILFQRLEEVA 674
           VTLVE+S+ SP+LPEIL  VG+S+ G DRT KELLQ LTFSDGVQARMDGI FQ LEE  
Sbjct: 608 VTLVEISRASPSLPEILLGVGSSLVGADRTAKELLQGLTFSDGVQARMDGIKFQTLEEYP 667

Query: 675 CGNPILTLIKDYLSSL 690
            GNPIL++IKD LSSL
Sbjct: 668 FGNPILSIIKDILSSL 683

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312283239|dbj|BAJ34485.1| unnamed protein product [Thellungiella halophila]

 Score =  990 bits (2560), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/692 (70%), Positives = 570/692 (82%), Gaps = 13/692 (1%)

Query: 1   MSKLLFLHTPHFTPKKLHTKTFSAIVTQSLTPLHCKCRLLSFSLNTTTTRSNSHLLSQIH 60
           M+KLL LH PH  P+   +  +S +   +L     +  LL  S  +++    SH+  ++ 
Sbjct: 1   MAKLLLLHAPHVVPR--FSSCWSLVSASALY----RRPLLVNSQFSSSDSYPSHIGPRLR 54

Query: 61  Y-YHRSFSVRSFDDSSSETKIQEPQQQAVVNEDYESRGKSKDEDE-YPSGEFEYEKFSAW 118
             Y R FS R+FDDSS+ +   E +QQ     +    G S++ DE YP+GE  YE  +AW
Sbjct: 55  SPYSRRFSARAFDDSSASSAEMEKEQQ-----EQRPDGVSRERDEDYPTGEMVYEDRNAW 109

Query: 119 KIFTVKLRMLVAFPWERVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDP 178
           + F VKLRMLVA+P +RVRKGSVLTM LRGQI+DQLKSRFSSGLSLPQI EN VKAAYDP
Sbjct: 110 ESFVVKLRMLVAYPCQRVRKGSVLTMTLRGQISDQLKSRFSSGLSLPQISENLVKAAYDP 169

Query: 179 RIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAP 238
           RI G+YLHIEPLSCGWGKVEEIRRH++DFKKSGKFI+GY+ +CG KEYYL CAC ELYAP
Sbjct: 170 RIAGVYLHIEPLSCGWGKVEEIRRHILDFKKSGKFIVGYINICGLKEYYLGCACNELYAP 229

Query: 239 PSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALL 298
           PSAY  LYGLTVQASFLGGV EKVGIEPQVQRIGKYKSAGDQL+RK +SEEN EML+ LL
Sbjct: 230 PSAYSFLYGLTVQASFLGGVFEKVGIEPQVQRIGKYKSAGDQLSRKNISEENYEMLSVLL 289

Query: 299 DNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLG 358
           DNIY NWLD VS + GK++ED+E FIN GVY++E+LKEEG I ++ YDDEVISMLKERLG
Sbjct: 290 DNIYANWLDGVSDSTGKQREDVESFINQGVYEIEKLKEEGLIKDIRYDDEVISMLKERLG 349

Query: 359 VQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQL 418
           V+KDK LP VDY+KYSGV++WTLGL+GG DQIA+IRA GSISRV+ PLS   S II EQL
Sbjct: 350 VEKDKKLPTVDYKKYSGVKKWTLGLSGGRDQIAIIRAGGSISRVKGPLSTPGSAIIAEQL 409

Query: 419 IEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASGGYY 478
           IEKIR VRESK+YKAAIIRIDSPGGDALASDLMWREI+LL+ESKPVIASMSDVAASGGYY
Sbjct: 410 IEKIRSVRESKKYKAAIIRIDSPGGDALASDLMWREIKLLAESKPVIASMSDVAASGGYY 469

Query: 479 MAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRP 538
           MAMAA TI+AENLTLTGSIGVVT +F L KLYEKIGFNKE ISRGKYAE+L AE+RPF+P
Sbjct: 470 MAMAANTIVAENLTLTGSIGVVTARFTLAKLYEKIGFNKETISRGKYAELLGAEERPFKP 529

Query: 539 DEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSR 598
           +EAELF KSAQ+AY+LFRDKAA SRSM VDKMEE AQGRVWTG DA SRGLVDALGG SR
Sbjct: 530 EEAELFGKSAQHAYQLFRDKAALSRSMPVDKMEEVAQGRVWTGKDAHSRGLVDALGGLSR 589

Query: 599 AVAIAKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVDRTLKELLQDLTFSDGV 658
           A+AIAK+KANIP  ++VTLVE+S+PS +LP+ILS +G+S+ GVDRTLK LL +LT ++GV
Sbjct: 590 AIAIAKKKANIPLHKKVTLVEISRPSTSLPDILSGIGSSVIGVDRTLKGLLDELTVTEGV 649

Query: 659 QARMDGILFQRLEEVACGNPILTLIKDYLSSL 690
           QARMDGI+FQ+L   +   PI+ L++DYLSSL
Sbjct: 650 QARMDGIMFQQLGRDSLATPIIDLLRDYLSSL 681

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839273|ref|XP_002887518.1| hypothetical protein ARALYDRAFT_476539 [Arabidopsis lyrata subsp. lyrata] gi|297333359|gb|EFH63777.1| hypothetical protein ARALYDRAFT_476539 [Arabidopsis lyrata subsp. lyrata]

 Score =  988 bits (2553), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/691 (69%), Positives = 572/691 (82%), Gaps = 17/691 (2%)

Query: 1   MSKLLFLHTPHFTPKKLHTKTFSAIVTQSLTPLHCKCRLLSFSLNTTTTRSNSHLLSQIH 60
           M+KLL LH PH  P+   +             L+ +  L++   +    R  S       
Sbjct: 1   MAKLLLLHAPHVIPRFSSSSRSLVSAAA----LYRRPLLVNPQFSHIGPRLRSP------ 50

Query: 61  YYHRSFSVRSFDDS-SSETKIQEPQQQAVVNEDYESRGKSKDEDEYPSGEFEYEKFSAWK 119
            Y+R FS R+FDDS +S T++++ +Q+ +++      GK KDED YP+GE EYE  +AW+
Sbjct: 51  -YNRRFSARAFDDSPASSTEMEKEKQEQLLDG---VSGK-KDED-YPTGEMEYENRNAWE 104

Query: 120 IFTVKLRMLVAFPWERVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPR 179
           IF VKLRML A+PW+RVRKGSVLTM LRGQI+DQLKSRF+SGLSLPQ+ ENFVKAAYDPR
Sbjct: 105 IFVVKLRMLFAYPWQRVRKGSVLTMTLRGQISDQLKSRFNSGLSLPQLSENFVKAAYDPR 164

Query: 180 IVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPP 239
           I G+YLHI+PLSCGWGKVEE+RRH++DFKKSGKFI+GY+ +CG KE+YL CAC ELYAPP
Sbjct: 165 IAGVYLHIDPLSCGWGKVEELRRHILDFKKSGKFIVGYISICGLKEFYLGCACNELYAPP 224

Query: 240 SAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299
           SAY  LYGLTVQASFLGGV EKVGIEPQVQRIGKYKSAGDQL+RK +SEEN EML+ LLD
Sbjct: 225 SAYSFLYGLTVQASFLGGVFEKVGIEPQVQRIGKYKSAGDQLSRKNISEENYEMLSVLLD 284

Query: 300 NIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGV 359
           NIY NWLD VS + GK++ED+E FIN GVY++E+LKEEG I ++ YDDEVI+MLKERLGV
Sbjct: 285 NIYANWLDGVSDSTGKKREDVENFINQGVYEIEKLKEEGLIKDIRYDDEVIAMLKERLGV 344

Query: 360 QKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLI 419
           +KDK LP VDY+KYSGV++WTLGL+GG DQIA+IRA GSISRV+ PLS   S II EQLI
Sbjct: 345 EKDKKLPTVDYKKYSGVKKWTLGLSGGRDQIAIIRAGGSISRVKGPLSTPGSAIIAEQLI 404

Query: 420 EKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASGGYYM 479
           EKIR VRESK++KAAIIRIDSPGGDALASDLMWREI+LL+E+KPVIASMSDVAASGGYYM
Sbjct: 405 EKIRSVRESKKFKAAIIRIDSPGGDALASDLMWREIKLLAETKPVIASMSDVAASGGYYM 464

Query: 480 AMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPD 539
           AMAA TI+AENLTLTGSIGVVT +F L KLYEKIGFNKE ISRGKYAE+L AE+RPF+P+
Sbjct: 465 AMAANTIVAENLTLTGSIGVVTARFTLAKLYEKIGFNKETISRGKYAELLGAEERPFKPE 524

Query: 540 EAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRA 599
           EAELF KSAQ+AY+LFRDKAA SRSM VDKMEE AQGRVWTG DA SRGLVDALGG SRA
Sbjct: 525 EAELFEKSAQHAYQLFRDKAALSRSMPVDKMEEVAQGRVWTGRDAHSRGLVDALGGLSRA 584

Query: 600 VAIAKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVDRTLKELLQDLTFSDGVQ 659
           +AIAKQKANIP +++VTLVE+S+PS +LP+ILS +G+S+ GVDRTLK LL +LT ++GVQ
Sbjct: 585 IAIAKQKANIPLNKKVTLVELSRPSTSLPDILSGIGSSVIGVDRTLKGLLDELTITEGVQ 644

Query: 660 ARMDGILFQRLEEVACGNPILTLIKDYLSSL 690
           ARMDGI+FQ+L   +   PI+ L+KDYLSSL
Sbjct: 645 ARMDGIMFQQLGRDSLATPIIDLLKDYLSSL 675

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42563213|ref|NP_565077.2| signal peptide peptidase [Arabidopsis thaliana] gi|12325146|gb|AAG52522.1|AC016662_16 putative protease IV; 48713-44371 [Arabidopsis thaliana] gi|332197414|gb|AEE35535.1| signal peptide peptidase [Arabidopsis thaliana]

 Score =  983 bits (2541), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/693 (68%), Positives = 567/693 (81%), Gaps = 20/693 (2%)

Query: 1   MSKLLFLHTPHFTPKKLHTKTFSAIVTQSL--TPLHCKCRLLSFSLNTTTTRSNSHLLSQ 58
           M+KLL LH PH  P+   + + S +   +L   PL    +              SH+  +
Sbjct: 1   MAKLLLLHAPHVIPRFSSSSSRSLVSAAALYRRPLLVNPQF-------------SHIGPR 47

Query: 59  IHY-YHRSFSVRSFDDSSSETKIQEPQQQAVVNEDYESRGKSKDEDEYPSGEFEYEKFSA 117
           +H  Y+R FS R+FDDS + +   E ++Q  + +    +   KDED YP+GE EYE  +A
Sbjct: 48  LHSPYNRRFSARAFDDSPASSAEMEKEKQEQLLDGVSGK---KDED-YPTGEMEYENRNA 103

Query: 118 WKIFTVKLRMLVAFPWERVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYD 177
           W+IF VK RML A+PW+RVRKGSVLTM LRGQI+DQLKSRF+SGLSLPQ+ ENFVKAAYD
Sbjct: 104 WEIFVVKFRMLFAYPWQRVRKGSVLTMTLRGQISDQLKSRFNSGLSLPQLSENFVKAAYD 163

Query: 178 PRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYA 237
           PRI G+YLHI+PLSCGWGKVEEIRRH+++FKKSGKFI+GY+ +CG KEYYL CAC EL+A
Sbjct: 164 PRIAGVYLHIDPLSCGWGKVEEIRRHILNFKKSGKFIVGYISICGLKEYYLGCACNELFA 223

Query: 238 PPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTAL 297
           PPSAY  LYGLTVQASFLGGV EKVGIEPQVQRIGKYKSAGDQL+RK++SEEN EML+ L
Sbjct: 224 PPSAYSFLYGLTVQASFLGGVFEKVGIEPQVQRIGKYKSAGDQLSRKSISEENYEMLSVL 283

Query: 298 LDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357
           LDNIY NWLD VS   GK++ED+E FIN GVY++E+LKE G I ++ YDDEVI+MLKERL
Sbjct: 284 LDNIYSNWLDGVSDATGKKREDVENFINQGVYEIEKLKEAGLIKDIRYDDEVITMLKERL 343

Query: 358 GVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQ 417
           GV+KDK LP VDY+KYSGV++WTLGLTGG DQIA+IRA GSISRV+ PLS   S II EQ
Sbjct: 344 GVEKDKKLPTVDYKKYSGVKKWTLGLTGGRDQIAIIRAGGSISRVKGPLSTPGSAIIAEQ 403

Query: 418 LIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASGGY 477
           LIEKIR VRESK+YKAAIIRIDSPGGDALASDLMWREI+LL+E+KPVIASMSDVAASGGY
Sbjct: 404 LIEKIRSVRESKKYKAAIIRIDSPGGDALASDLMWREIKLLAETKPVIASMSDVAASGGY 463

Query: 478 YMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFR 537
           YMAMAA  I+AENLTLTGSIGVVT +F L KLYEKIGFNKE ISRGKYAE+L AE+RP +
Sbjct: 464 YMAMAANAIVAENLTLTGSIGVVTARFTLAKLYEKIGFNKETISRGKYAELLGAEERPLK 523

Query: 538 PDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFS 597
           P+EAELF KSAQ+AY+LFRDKAA SRSM VDKMEE AQGRVWTG DA SRGL+DA+GG S
Sbjct: 524 PEEAELFEKSAQHAYQLFRDKAALSRSMPVDKMEEVAQGRVWTGKDAHSRGLIDAVGGLS 583

Query: 598 RAVAIAKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVDRTLKELLQDLTFSDG 657
           RA+AIAKQKANIP +++VTLVE+S+PS +LP+ILS +G+S+ GVDRTLK LL +LT ++G
Sbjct: 584 RAIAIAKQKANIPLNKKVTLVELSRPSTSLPDILSGIGSSVIGVDRTLKGLLDELTITEG 643

Query: 658 VQARMDGILFQRLEEVACGNPILTLIKDYLSSL 690
           VQARMDGI+FQ+L   +   PI+ ++KDYLSSL
Sbjct: 644 VQARMDGIMFQQLGRDSLATPIIDMLKDYLSSL 676

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6690270|gb|AAF24059.1|AF114385_1 putative protease SppA [Arabidopsis thaliana]

 Score =  961 bits (2485), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/696 (67%), Positives = 563/696 (80%), Gaps = 23/696 (3%)

Query: 1   MSKLLFLHTPHFTPKKLHTKTFSAIVTQSL--TPLHCKCRLLSFSLNTTTTRSNSHLLSQ 58
           M+KLL LH PH  P+   + + S +   +L   PL    +              SH+  +
Sbjct: 1   MAKLLLLHAPHVIPRFSSSSSRSLVSAAALYRRPLLVNPQF-------------SHIGPR 47

Query: 59  IHY-YHRSFSVRSFDDSSSETKIQEPQQQAVVNEDYESRGKSKDEDEYPSGEFEYEKFSA 117
           +H  Y+R FS R+FDDS + +   E ++Q  + +    +   KDED YP+ E EYE  +A
Sbjct: 48  LHSPYNRRFSARAFDDSPASSAEMEKEKQEQLLDGVSGK---KDED-YPTEEMEYENRNA 103

Query: 118 WKIFTVKLRMLVAFPWERVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYD 177
           W+IF VK RML A+PW+RVRKGSVLTM LRGQI+DQLKSRF+SGLSLPQ+ ENFVKAAYD
Sbjct: 104 WEIFVVKFRMLFAYPWQRVRKGSVLTMTLRGQISDQLKSRFNSGLSLPQLSENFVKAAYD 163

Query: 178 PRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYA 237
           PRI G+YLHI+PLSCGWGKVEEIRRH+++FKKSGKFI+GY+ +CG KEYYL CAC EL+A
Sbjct: 164 PRIAGVYLHIDPLSCGWGKVEEIRRHILNFKKSGKFIVGYISICGLKEYYLGCACNELFA 223

Query: 238 PPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTAL 297
           PPSAY  LYGLTVQASFLGGV EKVGIEPQVQRIGKYKSAGDQL+RK++SEEN EML+ L
Sbjct: 224 PPSAYSFLYGLTVQASFLGGVFEKVGIEPQVQRIGKYKSAGDQLSRKSISEENYEMLSVL 283

Query: 298 LDNIYG-NWL--DKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLK 354
           LDNIY   W+      +  GK++ED+E FIN GVY++E+LKE G I ++ YDDEVI+MLK
Sbjct: 284 LDNIYSIGWMVVSDAQNYAGKKREDVENFINQGVYEIEKLKEAGLIKDIRYDDEVITMLK 343

Query: 355 ERLGVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGII 414
           ERLGV+KDK LP VDY+KYSGV++WTLGLTGG DQIA+IRA GSISRV+ PLS   S II
Sbjct: 344 ERLGVEKDKKLPTVDYKKYSGVKKWTLGLTGGRDQIAIIRAGGSISRVKGPLSTPGSAII 403

Query: 415 GEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAAS 474
            EQLIEKIR VRESK+YKAAIIRIDSPGGDALASDLMWREI+LL+E+KPVIASMSDVAAS
Sbjct: 404 AEQLIEKIRSVRESKKYKAAIIRIDSPGGDALASDLMWREIKLLAETKPVIASMSDVAAS 463

Query: 475 GGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQR 534
           GGYYMAMAA  I+AENLTLTGSIGVVT +F L KLYEKIGFNKE ISRGKYAE+L AE+R
Sbjct: 464 GGYYMAMAANAIVAENLTLTGSIGVVTARFTLAKLYEKIGFNKETISRGKYAELLGAEER 523

Query: 535 PFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALG 594
           P +P+EAELF KSAQ+AY+LFRDKAA SRSM VDKMEE AQGRVWTG DA SRGL+DA+G
Sbjct: 524 PLKPEEAELFEKSAQHAYQLFRDKAALSRSMPVDKMEEVAQGRVWTGKDAHSRGLIDAVG 583

Query: 595 GFSRAVAIAKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVDRTLKELLQDLTF 654
           G SRA+AIAKQKANIP +++VTLVE+S+PS +LP+ILS +G+S+ GVDRTLK LL +LT 
Sbjct: 584 GLSRAIAIAKQKANIPLNKKVTLVELSRPSTSLPDILSGIGSSVIGVDRTLKGLLDELTI 643

Query: 655 SDGVQARMDGILFQRLEEVACGNPILTLIKDYLSSL 690
           ++GVQARMDGI+FQ+L   +   PI+ ++KDYLSSL
Sbjct: 644 TEGVQARMDGIMFQQLGRDSLATPIIDMLKDYLSSL 679

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562658|ref|XP_003549586.1| PREDICTED: protease 4-like [Glycine max]

 Score =  957 bits (2473), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/592 (77%), Positives = 522/592 (88%)

Query: 99  SKDEDEYPSGEFEYEKFSAWKIFTVKLRMLVAFPWERVRKGSVLTMKLRGQIADQLKSRF 158
           S  + +YP+G+F+++  + WK FTV L+ML AFPWER+R G++LT+KLRGQI+DQL SRF
Sbjct: 58  SSPKQDYPTGDFDFKPITGWKKFTVNLKMLTAFPWERLRYGTLLTIKLRGQISDQLNSRF 117

Query: 159 SSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYV 218
           S GLSLPQIC+NF KA YDPRI GIYLHI+ L+CGW KVEEIRRH+++F+KSGKF++ YV
Sbjct: 118 SPGLSLPQICDNFFKATYDPRISGIYLHIDILNCGWAKVEEIRRHILNFRKSGKFVVAYV 177

Query: 219 PVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278
           P C EKEYY+ACACEE+YAPPSAYFSL+GLTVQA FL GVLE +GIEP+V+RIGKYKS G
Sbjct: 178 PSCREKEYYIACACEEIYAPPSAYFSLFGLTVQAPFLRGVLENLGIEPEVERIGKYKSVG 237

Query: 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEG 338
           DQLTRKTMSE++ EMLTALLDNIY NWLDKVSS +GK++EDIE FIN GVY+VERLKEEG
Sbjct: 238 DQLTRKTMSEDHHEMLTALLDNIYTNWLDKVSSARGKKREDIENFINKGVYQVERLKEEG 297

Query: 339 FITNVLYDDEVISMLKERLGVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGS 398
           F+T+++YDDEVI+ LKERL V+ DKNLPMVD RKYSGVR+ TLGL+GG + IA+IRASGS
Sbjct: 298 FLTDIIYDDEVITRLKERLQVKTDKNLPMVDNRKYSGVRKSTLGLSGGKELIAIIRASGS 357

Query: 399 ISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLL 458
           I R+ S LS  SSGIIGE+LIEKIRKVRES +YKAAIIRIDSPGGDALASDLMWREIRLL
Sbjct: 358 IRRIESSLSTRSSGIIGEKLIEKIRKVRESNKYKAAIIRIDSPGGDALASDLMWREIRLL 417

Query: 459 SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKE 518
           + SKPVIASMSDVAASGGYYMAM AG I+AE+LTLTGSIGVVTGKFNLGKLYEKIGFNKE
Sbjct: 418 AASKPVIASMSDVAASGGYYMAMGAGVIVAESLTLTGSIGVVTGKFNLGKLYEKIGFNKE 477

Query: 519 IISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRV 578
           IISRG+YAE+ AAEQR  R DEAELF+KSAQ+AYK FRDKAA SRSMTVDKMEE AQGRV
Sbjct: 478 IISRGRYAELRAAEQRSLRRDEAELFSKSAQHAYKQFRDKAALSRSMTVDKMEEVAQGRV 537

Query: 579 WTGNDAASRGLVDALGGFSRAVAIAKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSI 638
           WTG DAAS GLVDA+GG SRAVAIAK KANIP DRQVT++E+S+PSP+LPEIL  +GNS+
Sbjct: 538 WTGKDAASHGLVDAIGGLSRAVAIAKLKANIPLDRQVTVLELSRPSPSLPEILRGLGNSL 597

Query: 639 AGVDRTLKELLQDLTFSDGVQARMDGILFQRLEEVACGNPILTLIKDYLSSL 690
            GVDRT  ELLQDLTFS  VQARMDGI+F++LE     NPIL LIKDYLSSL
Sbjct: 598 VGVDRTFNELLQDLTFSHEVQARMDGIMFEKLEGYPYANPILALIKDYLSSL 649

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450793|ref|XP_003595673.1| Protease [Medicago truncatula] gi|355484721|gb|AES65924.1| Protease [Medicago truncatula]

 Score =  939 bits (2426), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/635 (73%), Positives = 542/635 (85%), Gaps = 8/635 (1%)

Query: 56  LSQIHYYHRSFSVRSFDDSSSETKIQEPQQQAVVNEDYESRGKSKDEDEYPSGEFEYEKF 115
           L Q        S+R+FD SSS++KI+E     VV E  + R    DED YPSGEFE+E  
Sbjct: 44  LPQTRSRRTCISIRAFD-SSSDSKIEE----KVVQEGEKVR--IADED-YPSGEFEFEPI 95

Query: 116 SAWKIFTVKLRMLVAFPWERVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAA 175
           + W+ F VK+RM +A+PWER+RKGSVLTMKLRG+I+DQ+KS+FS GLSLPQICENF+KAA
Sbjct: 96  TGWRNFVVKVRMFIAYPWERIRKGSVLTMKLRGEISDQVKSKFSPGLSLPQICENFLKAA 155

Query: 176 YDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEEL 235
           YDPRI G+YLHI+ L CGWGKVEEIRRH+++FKKSGKF++ Y+P C EKEYYLACACEE+
Sbjct: 156 YDPRISGVYLHIDSLDCGWGKVEEIRRHILNFKKSGKFVVAYLPTCQEKEYYLACACEEI 215

Query: 236 YAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLT 295
           YAPPSAYFSL+GL+VQASF+ GVL+K+G+EPQV+RIGKYKSAGDQL R +MS+ENCEMLT
Sbjct: 216 YAPPSAYFSLFGLSVQASFIRGVLDKIGVEPQVERIGKYKSAGDQLARTSMSDENCEMLT 275

Query: 296 ALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355
           ALLDNIY NWLDKVSS KGK +EDIE FIN+GVY+V++LKEEG I+N++YDDEV  MLK+
Sbjct: 276 ALLDNIYTNWLDKVSSAKGKGREDIENFINEGVYQVDKLKEEGLISNLMYDDEVTDMLKK 335

Query: 356 RLGVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIG 415
           RLGV+K K LP VDYRKYS V +WT+G++GG   IA+IRASGSISRV+  LSL SSGI  
Sbjct: 336 RLGVKKKKKLPTVDYRKYSRVSKWTVGISGGKKLIAIIRASGSISRVKGQLSLFSSGITA 395

Query: 416 EQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASG 475
           E+ IEKIR VRESK++KAAIIRIDSPGGDALASDLMWREIRLL+ SKPVIASM+DVAASG
Sbjct: 396 EEFIEKIRTVRESKKFKAAIIRIDSPGGDALASDLMWREIRLLAASKPVIASMADVAASG 455

Query: 476 GYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRP 535
           GYYMAM    I+AE+LTLTGSIGVVTGKFNL KLYEKIGFNKEIISRG+YAE+++A+QR 
Sbjct: 456 GYYMAMGTDAIVAESLTLTGSIGVVTGKFNLAKLYEKIGFNKEIISRGRYAELVSADQRS 515

Query: 536 FRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGG 595
           FRPDEAELFAKSAQNAYK FRDKAA SRSMTVDKME+ AQGRVWTG DAAS GLVDA+GG
Sbjct: 516 FRPDEAELFAKSAQNAYKQFRDKAALSRSMTVDKMEKVAQGRVWTGKDAASHGLVDAIGG 575

Query: 596 FSRAVAIAKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVDRTLKELLQDLTFS 655
            SRA+AIAK KANIP+D QVT+VE+S  SP+LPEIL    +S+ GV+ TLKELLQ LTFS
Sbjct: 576 LSRAIAIAKLKANIPQDEQVTVVEISSSSPSLPEILFGARSSLTGVESTLKELLQGLTFS 635

Query: 656 DGVQARMDGILFQRLEEVACGNPILTLIKDYLSSL 690
           DGVQARMDGI F+ LE     NPIL++IKDYLSSL
Sbjct: 636 DGVQARMDGISFRSLEGYPNDNPILSIIKDYLSSL 670

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	690
TAIR|locus:2031526	677	SPPA "signal peptide peptidase	0.976	0.995	0.653	6.2e-236
UNIPROTKB|P95072	623	sppA "Possible protease IV Spp	0.328	0.364	0.342	1.1e-42
DICTYBASE|DDB_G0278333	649	DDB_G0278333 "Protease 4" [Dic	0.717	0.762	0.261	1.3e-39
UNIPROTKB|Q9KQK4	616	VC_1994 "Protease IV" [Vibrio	0.742	0.831	0.260	4e-35
TIGR_CMR|VC_1994	616	VC_1994 "protease IV" [Vibrio	0.742	0.831	0.260	4e-35
UNIPROTKB|P08395	618	sppA [Escherichia coli K-12 (t	0.659	0.736	0.274	1.6e-34
TIGR_CMR|CPS_2585	637	CPS_2585 "signal peptide pepti	0.657	0.712	0.264	5.9e-34
TIGR_CMR|SO_2420	614	SO_2420 "signal peptide peptid	0.740	0.832	0.260	1.2e-32
TIGR_CMR|ECH_0401	288	ECH_0401 "signal peptide pepti	0.262	0.628	0.313	8.1e-21
TIGR_CMR|APH_0272	298	APH_0272 "signal peptide pepti	0.279	0.647	0.288	4.3e-19

TAIR|locus:2031526 SPPA "signal peptide peptidase" [Arabidopsis thaliana (taxid:3702)]

 Score = 2275 (805.9 bits), Expect = 6.2e-236, P = 6.2e-236
 Identities = 452/692 (65%), Positives = 538/692 (77%)

Query:     1 MSKLLFLHTPHFTPKKLHTKTFSAIVTQSLTPLHCKCRLLSFSLNTTTTRSNSHLLSQIH 60
             M+KLL LH PH  P+      FS+  ++SL       R     +N       SH+  ++H
Sbjct:     1 MAKLLLLHAPHVIPR------FSSSSSRSLVSAAALYRR-PLLVNPQF----SHIGPRLH 49

Query:    61 --YYHXXXXXXXXXXXXXETKIQEPQQQAVVNEDYESRGKSKDEDEYPSGEFEYEKFSAW 118
               Y                 ++++ +Q+ ++  D  S GK KDED YP+GE EYE  +AW
Sbjct:    50 SPYNRRFSARAFDDSPASSAEMEKEKQEQLL--DGVS-GK-KDED-YPTGEMEYENRNAW 104

Query:   119 KIFTVKLRMLVAFPWERVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDP 178
             +IF VK RML A+PW+RVRKGSVLTM LRGQI+DQLKSRF+SGLSLPQ+ ENFVKAAYDP
Sbjct:   105 EIFVVKFRMLFAYPWQRVRKGSVLTMTLRGQISDQLKSRFNSGLSLPQLSENFVKAAYDP 164

Query:   179 RIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAP 238
             RI G+YLHI+PLSCGWGKVEEIRRH+++FKKSGKFI+GY+ +CG KEYYL CAC EL+AP
Sbjct:   165 RIAGVYLHIDPLSCGWGKVEEIRRHILNFKKSGKFIVGYISICGLKEYYLGCACNELFAP 224

Query:   239 PSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALL 298
             PSAY  LYGLTVQASFLGGV EKVGIEPQVQRIGKYKSAGDQL+RK++SEEN EML+ LL
Sbjct:   225 PSAYSFLYGLTVQASFLGGVFEKVGIEPQVQRIGKYKSAGDQLSRKSISEENYEMLSVLL 284

Query:   299 DNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLG 358
             DNIY NWLD VS   GK++ED+E FIN GVY++E+LKE G I ++ YDDEVI+MLKERLG
Sbjct:   285 DNIYSNWLDGVSDATGKKREDVENFINQGVYEIEKLKEAGLIKDIRYDDEVITMLKERLG 344

Query:   359 VQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGXXXXXXXXXXXXXXXXXXEQL 418
             V+KDK LP VDY+KYSGV++WTLGLTGG DQIA+IRA G                  EQL
Sbjct:   345 VEKDKKLPTVDYKKYSGVKKWTLGLTGGRDQIAIIRAGGSISRVKGPLSTPGSAIIAEQL 404

Query:   419 IEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVXXXXXXX 478
             IEKIR VRESK+YKAAIIRIDSPGGDALASDLMWREI+LL+E+KPVIASMSDV       
Sbjct:   405 IEKIRSVRESKKYKAAIIRIDSPGGDALASDLMWREIKLLAETKPVIASMSDVAASGGYY 464

Query:   479 XXXXXXTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRP 538
                    I+AENLTLTGSIGVVT +F L KLYEKIGFNKE ISRGKYAE+L AE+RP +P
Sbjct:   465 MAMAANAIVAENLTLTGSIGVVTARFTLAKLYEKIGFNKETISRGKYAELLGAEERPLKP 524

Query:   539 DEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSR 598
             +EAELF KSAQ+AY+LFRDKAA SRSM VDKMEE AQGRVWTG DA SRGL+DA+GG SR
Sbjct:   525 EEAELFEKSAQHAYQLFRDKAALSRSMPVDKMEEVAQGRVWTGKDAHSRGLIDAVGGLSR 584

Query:   599 AVAIAKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVDRTLKELLQDLTFSDGV 658
             A+AIAKQKANIP +++VTLVE+S+PS +LP+ILS +G+S+ GVDRTLK LL +LT ++GV
Sbjct:   585 AIAIAKQKANIPLNKKVTLVELSRPSTSLPDILSGIGSSVIGVDRTLKGLLDELTITEGV 644

Query:   659 QARMDGILFQRLEEVACGNPILTLIKDYLSSL 690
             QARMDGI+FQ+L   +   PI+ ++KDYLSSL
Sbjct:   645 QARMDGIMFQQLGRDSLATPIIDMLKDYLSSL 676

GO:0005886 "plasma membrane" evidence=ISM

GO:0006465 "signal peptide processing" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA;IDA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009642 "response to light intensity" evidence=IEP

GO:0009507 "chloroplast" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

UNIPROTKB|P95072 sppA "Possible protease IV SppA (Endopeptidase IV) (Signal peptide peptidase)" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 338 (124.0 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
 Identities = 84/245 (34%), Positives = 125/245 (51%)

Query:   422 IRKVRESKRYKAAIIRIDSPGGDALASDLMWREI-RLLSESKPVIASMSDVXXXXXXXXX 480
             +R+V       A ++R+DSPGG   AS+ +WRE+ R     KPV+ASM  V         
Sbjct:   367 LREVAADDSVSAIVLRVDSPGGSVTASETIWREVARARDRGKPVVASMGAVAASGGYYVS 426

Query:   481 XXXXTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDE 540
                  I+A   T+TGSIGV+TGK  +  L +++G   + +     A+  + +  PF PD+
Sbjct:   427 MGADAIVANPGTITGSIGVITGKLVVRDLKDRLGVGSDAVRTNANADAWSIDA-PFTPDQ 485

Query:   541 AELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAV 600
                    A   Y  F ++ A  R MT D ++  A+GRVWTG DA  RGLVD LGG   AV
Sbjct:   486 QAHREAEADLFYSDFVERVAEGRKMTTDAVDVVARGRVWTGADALDRGLVDELGGLRTAV 545

Query:   601 AIAKQKANIPEDRQVTLV--------EMSKPSPT-------LPEILSSV-GNSIAGVDRT 644
               AK  A + ED +V +V        +M +P P+       LP+ + ++   SI G+   
Sbjct:   546 RRAKVLAGLDEDTEVRIVSYPGSSLWDMVRPRPSSRPAAASLPDAMGALLARSIVGIVEQ 605

Query:   645 LKELL 649
             +++ L
Sbjct:   606 VEQTL 610

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

DICTYBASE|DDB_G0278333 DDB_G0278333 "Protease 4" [Dictyostelium discoideum (taxid:44689)]

 Score = 440 (159.9 bits), Expect = 1.3e-39, P = 1.3e-39
 Identities = 134/513 (26%), Positives = 227/513 (44%)

Query:   162 LSLPQICENFVKAAYDPRIVGIYLHIEPLS-CGWGKVEEIRRHVVDFKKSGKFIIGYVP- 219
             +S   + +   KAA D R++G+ + +   +      ++E R  +  FK  GK  + +   
Sbjct:    88 ISFRSLLDAIEKAANDKRVIGLIVRLSGENQFSLANIQEFRNAISFFKSKGKRTVAFTDS 147

Query:   220 VC----GEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYK 275
              C    G   YY+A    ++Y  PS   +L       +F+   LEK+ I P      +YK
Sbjct:   148 FCEAGSGIGRYYMASIFHDVYMAPSGTLNLINTQYDFAFIKKTLEKLNIVPDTITRKEYK 207

Query:   276 SAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLK 335
             +A   L  + ++E   E + A+  ++Y   ++ ++  +   KE +      G +  ++  
Sbjct:   208 NALSGLVNEHLTEPEKESMNAIFKSLYEQIIEDIAKDRSLTKERVNELFESGPFSSDKAL 267

Query:   336 EEGFITNVLYDDEVISMLKERLGVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQ---IAV 392
                 + + LY DEV +   E+L   K KN  ++   KY+   +   G   G  Q   IA+
Sbjct:   268 VNKLVDSTLYGDEVYTTTYEKLETTK-KNSNLLYAHKYNAKTKPLYGKKFGRSQQGVIAL 326

Query:   393 IRASGXXXXXXXXXXXXXX-XXXXEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLM 451
             I A G                   + L+  IR     K  KA +IR++S GG  +ASD++
Sbjct:   327 INAEGTIHQGTSANKYNGGPSIGSDSLVLAIRSATLDKDVKAIVIRVNSGGGSYIASDMV 386

Query:   452 WREIRLLSES-KPVIASMSDVXXXXXXXXXXXXXTILAENLTLTGSIGVVTGKFNLGKLY 510
               EI    ++ K ++ SM                 I+A   TLTGSIGV+T KFNL  ++
Sbjct:   387 HHEIEASKKAGKKIVISMGTYCASGGYFFACNADKIVALGATLTGSIGVLTAKFNLKGMW 446

Query:   511 EK---IGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQN--AYKLFRDKAAFSRSM 565
             E+   + F+   ++     +            E +L   ++     Y+ F  K +  R +
Sbjct:   447 EEKVHVKFDALHLNPDGATDNSTYFSSLHNYTEKQLAEVNSYMDFIYEDFTSKVSKGRRL 506

Query:   566 TVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKANIPEDRQVTLVEMSKPSP 625
             T D++EE A+GRVWTG  A    LVD LGG   A+ +AK+   I  + Q  +V   K + 
Sbjct:   507 TRDQVEEIARGRVWTGAQALKLSLVDKLGGLKEAIEVAKELVGIASNVQPHVVTYPKET- 565

Query:   626 TLPEILSSVGNSIAGVDRTLKELLQDLTFSDGV 658
              L ++++S  N+   ++R        +T S GV
Sbjct:   566 VLSQLVASSANNSQDLERRGTPAQASITHSVGV 598

GO:0030587 "sorocarp development" evidence=IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0006465 "signal peptide processing" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q9KQK4 VC_1994 "Protease IV" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 402 (146.6 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 143/548 (26%), Positives = 236/548 (43%)

Query:   132 PWERVRKGSVLTMKLRGQIADQ------LKSRFSS--GLSLPQ------ICENFVKAAYD 177
             P   + K S L + L G I +Q      + S   S  G  LP+      I E    A  D
Sbjct:    48 PLPTMDKSSALVLNLSGPIVEQSTHINPMDSFTGSVFGEELPRENVLFDIVETLRHAKND 107

Query:   178 PRIVGIYLHIEPL-SCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELY 236
               + G+ L +  +      K+  I + + +FK SGK +        + +YYLA   +++Y
Sbjct:   108 NNVTGLVLALGDMPETNLTKLRYIAKAINEFKASGKPVFAVGDFYNQSQYYLASYADKIY 167

Query:   237 APPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTA 296
               P     L G +  + +   +LEK+ +   V R+G YKSA +   R  MS+   E  + 
Sbjct:   168 LAPDGAVLLKGYSAYSMYYKTLLEKLDVTTHVFRVGTYKSAIEPFVRDDMSDAARESASR 227

Query:   297 LLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERL--------KEEGFITNVLYDDE 348
              L  ++  ++D V++ +    + +   +   V +++ +        K+ G +  +    +
Sbjct:   228 WLTQLWSAYVDDVAANRQIEIKTLTPSMEQFVAQLKEVNGDLAALSKKVGLVDELATRQQ 287

Query:   349 VISMLKERLGVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGXXXXXXXXXXX 408
             V   L E  G     +   + Y +Y    + T  LT   D IAV+ ASG           
Sbjct:   288 VRQTLAETFGSDGKDSYNAIGYYEYKTTIKPTT-LTDAND-IAVVVASGAIMDGSQPRGT 345

Query:   409 XXXXXXXEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSES-KPVIAS 467
                    + +   +R+ R     KA ++R+DSPGG A AS+++  EI  L  + KPV+ S
Sbjct:   346 VGG----DTVAGLLREARNDSNVKAVVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVS 401

Query:   468 MSDVXXXXXXXXXXXXXTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYA- 526
             MS +              I+A+  TLTGSIG+ +      K    +G   + +    ++ 
Sbjct:   402 MSSLAASGGYWISMSADKIVAQPTTLTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPFSG 461

Query:   527 EVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAAS 586
             + L         D  +L     ++ Y+ F    A  R +T+  ++E AQGRVWT  DA +
Sbjct:   462 QGLTTGLTQGAKDAIQL---GIEHGYQRFISLVAEKRGLTLKAVDELAQGRVWTAQDAQT 518

Query:   587 RGLVDALGGFSRAVAIAKQKANIPEDRQVTLVEMSKPSPT-LPEILSSVGNSIA-GVDRT 644
              GLVD LG F  AV +A   A + +     + E   P+   L ++L  V  S+   V   
Sbjct:   519 LGLVDQLGDFDDAVHLAADLAQLDQYNLYWVEEPLTPAQQFLQDLLGQVRVSLGLDVSTL 578

Query:   645 LKELLQDL 652
             L + LQ L
Sbjct:   579 LPKSLQPL 586

GO:0006508 "proteolysis" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

TIGR_CMR|VC_1994 VC_1994 "protease IV" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 402 (146.6 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 143/548 (26%), Positives = 236/548 (43%)

Query:   132 PWERVRKGSVLTMKLRGQIADQ------LKSRFSS--GLSLPQ------ICENFVKAAYD 177
             P   + K S L + L G I +Q      + S   S  G  LP+      I E    A  D
Sbjct:    48 PLPTMDKSSALVLNLSGPIVEQSTHINPMDSFTGSVFGEELPRENVLFDIVETLRHAKND 107

Query:   178 PRIVGIYLHIEPL-SCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELY 236
               + G+ L +  +      K+  I + + +FK SGK +        + +YYLA   +++Y
Sbjct:   108 NNVTGLVLALGDMPETNLTKLRYIAKAINEFKASGKPVFAVGDFYNQSQYYLASYADKIY 167

Query:   237 APPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTA 296
               P     L G +  + +   +LEK+ +   V R+G YKSA +   R  MS+   E  + 
Sbjct:   168 LAPDGAVLLKGYSAYSMYYKTLLEKLDVTTHVFRVGTYKSAIEPFVRDDMSDAARESASR 227

Query:   297 LLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERL--------KEEGFITNVLYDDE 348
              L  ++  ++D V++ +    + +   +   V +++ +        K+ G +  +    +
Sbjct:   228 WLTQLWSAYVDDVAANRQIEIKTLTPSMEQFVAQLKEVNGDLAALSKKVGLVDELATRQQ 287

Query:   349 VISMLKERLGVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGXXXXXXXXXXX 408
             V   L E  G     +   + Y +Y    + T  LT   D IAV+ ASG           
Sbjct:   288 VRQTLAETFGSDGKDSYNAIGYYEYKTTIKPTT-LTDAND-IAVVVASGAIMDGSQPRGT 345

Query:   409 XXXXXXXEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSES-KPVIAS 467
                    + +   +R+ R     KA ++R+DSPGG A AS+++  EI  L  + KPV+ S
Sbjct:   346 VGG----DTVAGLLREARNDSNVKAVVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVS 401

Query:   468 MSDVXXXXXXXXXXXXXTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYA- 526
             MS +              I+A+  TLTGSIG+ +      K    +G   + +    ++ 
Sbjct:   402 MSSLAASGGYWISMSADKIVAQPTTLTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPFSG 461

Query:   527 EVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAAS 586
             + L         D  +L     ++ Y+ F    A  R +T+  ++E AQGRVWT  DA +
Sbjct:   462 QGLTTGLTQGAKDAIQL---GIEHGYQRFISLVAEKRGLTLKAVDELAQGRVWTAQDAQT 518

Query:   587 RGLVDALGGFSRAVAIAKQKANIPEDRQVTLVEMSKPSPT-LPEILSSVGNSIA-GVDRT 644
              GLVD LG F  AV +A   A + +     + E   P+   L ++L  V  S+   V   
Sbjct:   519 LGLVDQLGDFDDAVHLAADLAQLDQYNLYWVEEPLTPAQQFLQDLLGQVRVSLGLDVSTL 578

Query:   645 LKELLQDL 652
             L + LQ L
Sbjct:   579 LPKSLQPL 586

GO:0006508 "proteolysis" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

UNIPROTKB|P08395 sppA [Escherichia coli K-12 (taxid:83333)]

 Score = 397 (144.8 bits), Expect = 1.6e-34, P = 1.6e-34
 Identities = 133/484 (27%), Positives = 221/484 (45%)

Query:   140 SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCG-WGKVE 198
             S L+ +L G  +D+L+       SL  I     +A  D  I GI + ++  + G    ++
Sbjct:    78 SKLSRQLLGASSDRLQEN-----SLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQ 132

Query:   199 EIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGV 258
              I + + +F+ SGK +        + +YYLA    +++  P     L+G      +   +
Sbjct:   133 YIGKALKEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSL 192

Query:   259 LEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE 318
             L+K+ +   V R+G YKSA +   R  MS    E  +  +  ++ N+L+ V++ +    E
Sbjct:   193 LDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAE 252

Query:   319 DI---ERFINDGVYKVERLKEEGFITNVLYDD-----EVISMLKERLGVQK-DKNLPMVD 369
              +    + + +G+ K      +  + N L D      E+   L +  G  K DKN   + 
Sbjct:   253 QVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDKNYRAIS 312

Query:   370 YRKYSGVRRWTLGLTGGGDQIAVIRASGXXXXXXXXXXXXXXXXXXEQLIEKIRKVRESK 429
             Y  Y+ ++  T   TG  D I V+ A+G                   Q    IR  R   
Sbjct:   313 YYDYA-LK--TPADTG--DSIGVVFANGAIMDGEETQGNVGGDTTAAQ----IRDARLDP 363

Query:   430 RYKAAIIRIDSPGGDALASDLMWREIRLL-SESKPVIASMSDVXXXXXXXXXXXXXTILA 488
             + KA ++R++SPGG   AS+++  E+    +  KPV+ SM  +              I+A
Sbjct:   364 KVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVA 423

Query:   489 ENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAK-S 547
                TLTGSIG+      +    + IG + + +S    A+V      P  P EA+L  + S
Sbjct:   424 NPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALP--P-EAQLMMQLS 480

Query:   548 AQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKA 607
              +N YK F    A +R  T +++++ AQG VWTG DA + GLVD+LG F  AVA A + A
Sbjct:   481 IENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELA 540

Query:   608 NIPE 611
              + +
Sbjct:   541 KVKQ 544

GO:0006465 "signal peptide processing" evidence=IEA;IMP

GO:0005887 "integral to plasma membrane" evidence=IDA

GO:0004175 "endopeptidase activity" evidence=IDA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0006508 "proteolysis" evidence=IEA

TIGR_CMR|CPS_2585 CPS_2585 "signal peptide peptidase SppA, 67K type" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 393 (143.4 bits), Expect = 5.9e-34, P = 5.9e-34
 Identities = 126/477 (26%), Positives = 210/477 (44%)

Query:   164 LPQICENFVKAAYDPRIVGIYLHIEPLS-CGWGKVEEIRRHVVDFKKSGKFIIGYVPVCG 222
             L  I +   KA  D R+  + L ++ L+  G  K+++I   + DFK SGK II       
Sbjct:    95 LTDIIDVISKAKKDDRVEILVLQLQGLNRAGLTKLQDIAAALEDFKSSGKQIIALGDQFS 154

Query:   223 EKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLT 282
             + +YYLA    +++  P  +  L G      +    LEK+ I   + R+G +KSA +   
Sbjct:   155 QDQYYLASTANDIWLNPQGFMLLDGYGRYNMYFKSALEKLAINQHIFRVGTFKSAVEPFI 214

Query:   283 RKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYK--------VERL 334
             R  MS+   +     L +++  + + V++ +G   ++ +  I++ V K         +  
Sbjct:   215 RDDMSDAAKKANKLWLADLWMQYKEDVAARRGFGVDNFDENIDNLVAKFSAADSSFAQYA 274

Query:   335 KEEGFITNVLYDDEVISMLKERLGV-QKDKNLPMVDYRKY-----SGVRRWTLGLTGGGD 388
              +  ++  +    E+ S L E +G  +K  +   + Y+ Y     S +           D
Sbjct:   275 LKNNWVDQLKSRQEMRSELIELVGENKKGDSYNHIGYKNYIAATSSSIEESAELAEKSHD 334

Query:   389 QIAVIRASGXXXXXXXXXXXXXXXXXXEQLIEKIRKVRESKRYKAAIIRIDSPGGDALAS 448
             ++A+I A G                  + L    RK R +   KA ++R+DSPGG A AS
Sbjct:   335 KVAIIVAKGTILDGTQKPGTIGGDSTAKLL----RKARNNDDVKAVVLRVDSPGGSAYAS 390

Query:   449 DLMWREIRLLSES-KPVIASMSDVXXXXXXXXXXXXXTILAENLTLTGSIGVVTGKFNLG 507
             +++ +E+ LL ++ KPV+ASM                 I A   T+TGSIG+        
Sbjct:   391 EIIRQEVELLKKAGKPVVASMGTYAASGGYWISAPADKIYAAPSTITGSIGIFGMMMTFE 450

Query:   508 KLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTV 567
                 K+G   + +     A    +  +   P  A LF  S    Y+ F    A +R MT+
Sbjct:   451 DTLSKMGIYTDGVGTTDIAGF--SPTQALTPGMANLFQLSINRGYQEFIQLVATNRDMTL 508

Query:   568 DKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKANIPEDRQVTLVEMSKPS 624
             ++++  AQGRVW+G  A   GLVD LG  + AV  A   A + E     L+E  + S
Sbjct:   509 EEVDAIAQGRVWSGKKAKELGLVDELGNLTDAVVAAATLAKL-EQYDTLLIEKEQSS 564

GO:0006508 "proteolysis" evidence=ISS

TIGR_CMR|SO_2420 SO_2420 "signal peptide peptidase SppA, 67K type" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 381 (139.2 bits), Expect = 1.2e-32, P = 1.2e-32
 Identities = 144/553 (26%), Positives = 242/553 (43%)

Query:   135 RVRKGSVLTMKLRGQIADQ----------LK---SRFSSG-LSLPQICENFVKAAYDPRI 180
             +V   S L + L G I DQ          LK   +  S G + L  I      A +D RI
Sbjct:    49 KVEDNSALVLNLAGSIVDQKQQVDPIEAALKQGNNGSSDGEILLADIIYVIDNATHDNRI 108

Query:   181 VGIYLHIEPLS-CGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPP 239
               I L +  L   G  K++ I   +  FK+SGK ++       + +Y+LA     +Y  P
Sbjct:   109 STIVLDLAELKRAGISKLQSIGDALNRFKESGKKVVAIGNYYEQNQYFLASFATTIYLNP 168

Query:   240 SAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299
                 SL GL++   +    LEK+ I+  + R+G +KSA +   R  MS+   E  +ALL 
Sbjct:   169 QGSVSLDGLSMYNQYFKSALEKLKIKAHIFRVGTFKSAVEPYMRDDMSDAAREASSALLA 228

Query:   300 NIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERL-KEEG----------FITNVLYDDE 348
             +I+ ++   V+     R+ D    + D    + +L K EG          ++  +  D+E
Sbjct:   229 DIWQSYTQTVAKN---RQIDANALVLDSPSYLAQLDKAEGDSATMALNMKWVDTLATDEE 285

Query:   349 VISMLKERLGVQKD-KNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGXXXXXXXXXX 407
                ++ + +G + +  +   V +  Y  +    L      D + +I ASG          
Sbjct:   286 FRKIMLDAVGKENNGDSFKQVSFYDYLTLVT-PLPSFIEQDSVGIIVASGTILNGSQPAG 344

Query:   408 XXXXXXXXEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSES-KPVIA 466
                     + L    RK R  K  KA ++R+DSPGG A AS+ + +E+  L  + KPV+ 
Sbjct:   345 QIGGDSTADLL----RKARFDKHIKALVLRVDSPGGSAFASEQIRQELLALKAAGKPVVV 400

Query:   467 SMSDVXXXXXXXXXXXXXTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYA 526
             SM  +              I A   TLTGSIG+             +G + + +S  ++A
Sbjct:   401 SMGSLAASGGYWISASADYIFATPTTLTGSIGIFGMITTFEDSLASLGIHTDGVSTSEWA 460

Query:   527 EVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAAS 586
              +     R   P    +  +  +  Y  F    A  R ++++++++ AQGRVW+G  A  
Sbjct:   461 GLSVT--RTLSPQIESVIQRHIERGYLDFISLVAKERKISLEQVDKIAQGRVWSGKKALE 518

Query:   587 RGLVDALGGFSRAVAIAKQKANIPE-DRQVTLVEMSKPSPTLPEILSSVGNSI-AGVDRT 644
              GLVD LG   +AV  A Q AN+   D ++   E++     + ++ +SV   + A +  +
Sbjct:   519 LGLVDELGDIDQAVTKAAQLANLSLFDTRLIEQELTPEQRFVQQMFASVSAYLPASLSHS 578

Query:   645 --LKELLQDLTFS 655
               L+++L   T S
Sbjct:   579 TLLEQMLNQWTGS 591

GO:0006508 "proteolysis" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

TIGR_CMR|ECH_0401 ECH_0401 "signal peptide peptidase SppA" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 254 (94.5 bits), Expect = 8.1e-21, P = 8.1e-21
 Identities = 59/188 (31%), Positives = 99/188 (52%)

Query:   416 EQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVXXXX 475
             E++   ++K+ E       I+ I+SPGG    S+++++ IR +S++KPV+A ++D     
Sbjct:    63 EEMDALLKKIAEDNHVTGLILNINSPGGSVTGSEILYQNIRNVSKNKPVVALLNDFAASG 122

Query:   476 XXXXXXXXXTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRP 535
                       I+A + T+TGSIGV+     +  L EK+G + + I        L AE  P
Sbjct:   123 GYMTAIAADYIIARHTTITGSIGVLMQYIGINPLAEKMGISLKSIKSSN----LKAETSP 178

Query:   536 FRP---DEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDA 592
             F     ++ E   +  +N+Y  F D  A  R M  D++ + A G ++TG++A S GLVD 
Sbjct:   179 FEELTEEKEESIRRIIKNSYDYFVDIVADRRKMEKDQVLKIANGSIYTGSEALSIGLVDQ 238

Query:   593 LGGFSRAV 600
             +GG   A+
Sbjct:   239 IGGQDEAM 246

GO:0006465 "signal peptide processing" evidence=ISS

TIGR_CMR|APH_0272 APH_0272 "signal peptide peptidase SppA, 36K type" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 238 (88.8 bits), Expect = 4.3e-19, P = 4.3e-19
 Identities = 56/194 (28%), Positives = 99/194 (51%)

Query:   422 IRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVXXXXXXXXXX 481
             + +V +    KA ++RIDSPGG    S+ ++R+IR ++E KPV+A M +V          
Sbjct:    73 LSRVEDDSSIKAVVLRIDSPGGTVGDSEELYRQIRAIAEKKPVVAVMGNVAASGGYMTAL 132

Query:   482 XXXTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEA 541
                 ++A N T+TGSIGV+T    + ++ E++G   + I   +    ++  +   +  E 
Sbjct:   133 AADHVIANNGTITGSIGVLTQYVGVARIAERLGITLKTIKTSELKASMSPLEEMSKNSE- 191

Query:   542 ELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVA 601
             ++  +  ++ +  F    A  R ++ ++  + A GRV+TG  A    LVD LGG   A+ 
Sbjct:   192 DVMHELIKDFHHFFVSMVAERRGLSEEEAYKVADGRVYTGAQALQVKLVDELGGEREALE 251

Query:   602 IAKQKANIPEDRQV 615
               K   NI  ++ V
Sbjct:   252 WLKSHHNIDTEKVV 265

GO:0006465 "signal peptide processing" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	690
TIGR00705	584	TIGR00705, SppA_67K, signal peptide peptidase SppA	1e-82
cd07023	208	cd07023, S49_Sppa_N_C, Signal peptide peptidase A	4e-78
cd07018	222	cd07018, S49_SppA_67K_type, Signal peptide peptida	4e-72
COG0616	317	COG0616, SppA, Periplasmic serine proteases (ClpP	5e-60
TIGR00706	208	TIGR00706, SppA_dom, signal peptide peptidase SppA	2e-48
PRK10949	618	PRK10949, PRK10949, protease 4; Provisional	6e-42
pfam01343	149	pfam01343, Peptidase_S49, Peptidase family S49	4e-40
cd07019	211	cd07019, S49_SppA_1, Signal peptide peptidase A (S	5e-26
cd07022	214	cd07022, S49_Sppa_36K_type, Signal peptide peptida	5e-24
cd07014	177	cd07014, S49_SppA, Signal peptide peptidase A	5e-22
pfam01343	149	pfam01343, Peptidase_S49, Peptidase family S49	1e-16
cd00394	161	cd00394, Clp_protease_like, Caseinolytic protease	2e-16
COG0616	317	COG0616, SppA, Periplasmic serine proteases (ClpP	1e-11
cd07023	208	cd07023, S49_Sppa_N_C, Signal peptide peptidase A	2e-11
cd07018	222	cd07018, S49_SppA_67K_type, Signal peptide peptida	5e-11
TIGR00706	208	TIGR00706, SppA_dom, signal peptide peptidase SppA	9e-10
PRK11778	330	PRK11778, PRK11778, putative inner membrane peptid	1e-08
cd07019	211	cd07019, S49_SppA_1, Signal peptide peptidase A (S	0.002
cd07021	178	cd07021, Clp_protease_NfeD_like, Nodulation format	0.002

>gnl|CDD|233097 TIGR00705, SppA_67K, signal peptide peptidase SppA, 67K type

 Score =  272 bits (697), Expect = 1e-82
 Identities = 157/547 (28%), Positives = 245/547 (44%), Gaps = 43/547 (7%)

Query: 136 VRKGSVLTMKLRGQIADQLKSRFS-----------SGLSLPQICENFVKAAYDPRIVGIY 184
           V  G++L     G + DQ   R S             +SL  I     +AA D RI G+ 
Sbjct: 40  VSSGALLLDLPVGDVTDQ-SPRVSLQGTLLGNPKGRAISLFDIVNAIRQAADDRRIEGLV 98

Query: 185 LHIEPLSCGW--GKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAY 242
             +   S GW    + EI   + +FK SGK +  Y     + +YYLA   +E+   P   
Sbjct: 99  FDLSNFS-GWDSPHLVEIGSALSEFKDSGKPVYAYGTNYSQGQYYLASFADEIILNPMGS 157

Query: 243 FSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIY 302
             L+G   +  F  G+L+K+G+     R+G YK A +  +RK MS E        L  ++
Sbjct: 158 VDLHGFYTETLFYKGMLDKLGVRWHXFRVGTYKGAVEPFSRKDMSPEARRNYQRWLGELW 217

Query: 303 GNWLDKVSSTKGKRKEDIERFINDGVYKVERLK--------EEGFITNVLYDDEVISMLK 354
            N+L  VS  +    + +  +    +  +++L          E  +T V    E    LK
Sbjct: 218 QNYLSSVSRNRAIPVQQLAPYAQGLLELLQKLNGDGARYALAEKLVTAVCSYAEAGKALK 277

Query: 355 ERLGVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGII 414
                  DK    +    Y+  R     +    D+I ++   G I+  R     +     
Sbjct: 278 FLFEDDYDKAKNFISLDDYNRDRPQRHDV---QDKIGIVHLEGPIADGRD----TEGNTG 330

Query: 415 GEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREI-RLLSESKPVIASMSDVAA 473
           G+ +   +R  R     KA ++RI+SPGG   AS+++ RE+ R  +  KPVI SM  +AA
Sbjct: 331 GDTVAALLRVARSDPDIKAVVLRINSPGGSVFASEIIRRELARAQARGKPVIVSMGAMAA 390

Query: 474 SGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQ 533
           SGGY++A AA  I+A   T+TGSIGV +         ++IG + + +S  + A V     
Sbjct: 391 SGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLL-- 448

Query: 534 RPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDAL 593
           RP   ++  +   S +  Y+ F    +  R++T  ++++ AQGRVWTG DA S GLVDAL
Sbjct: 449 RPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDAL 508

Query: 594 GGFSRAVAIAKQKANIPEDRQV-------TLVE--MSKPSPTLPEILSSVGNS-IAGVDR 643
           GG   AVA A + A+  E   V       TL    +      L +   +   + +  ++R
Sbjct: 509 GGLDEAVAKAAKLAHCREQWSVEVYKDSATLGSELLQNLWDGLQKRSLAFLPAPLVILER 568

Query: 644 TLKELLQ 650
              EL Q
Sbjct: 569 EWGELAQ 575

This model represents the signal peptide peptidase A (SppA, protease IV) as found in E. coli, Treponema pallidum, Mycobacterium leprae, and several other species, in which it has a molecular mass around 67 kDa and a duplication such that the N-terminal half shares extensive homology with the C-terminal half. This enzyme was shown in E. coli to form homotetramers. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 584

>gnl|CDD|132934 cd07023, S49_Sppa_N_C, Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

 Score =  248 bits (635), Expect = 4e-78
 Identities = 92/217 (42%), Positives = 128/217 (58%), Gaps = 10/217 (4%)

Query: 389 QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALAS 448
           +IAVI   G+IS           GI  + LIE++RK RE    KA ++RI+SPGG  +AS
Sbjct: 1   KIAVIDIEGTIS--------DGGGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVAS 52

Query: 449 DLMWREIRLLSES-KPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLG 507
           + ++REIR L ++ KPV+ASM DVAASGGYY+A AA  I+A   T+TGSIGV+    NL 
Sbjct: 53  EEIYREIRRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLE 112

Query: 508 KLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTV 567
           +L +K+G  ++ I  G   +  +   RP   +E  +      + Y  F D  A  R M+ 
Sbjct: 113 ELLDKLGIERDTIKSGPGKDKGSP-DRPLTEEERAILQALVDDIYDQFVDVVAEGRGMSG 171

Query: 568 DKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAK 604
           +++++ A GRVWTG  A   GLVD LGG   A+A A 
Sbjct: 172 ERLDKLADGRVWTGRQALELGLVDELGGLDDAIAKAA 208

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. Interestingly, the single membrane spanning E. coli SppA carries out catalysis using a Ser-Lys dyad with the serine located in the conserved carboxy-terminal protease domain and the lysine in the non-conserved amino-terminal domain. Length = 208

>gnl|CDD|132929 cd07018, S49_SppA_67K_type, Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

 Score =  232 bits (594), Expect = 4e-72
 Identities = 84/222 (37%), Positives = 124/222 (55%), Gaps = 8/222 (3%)

Query: 142 LTMKLRGQIADQ--------LKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCG 193
           L + L G + +Q        L    SS LSL  + E   KAA D RI GI L ++ LS G
Sbjct: 1   LVLDLSGSLVEQPPPSPPLLLGGGESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGG 60

Query: 194 WGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQAS 253
             K+EE+R+ +  F+ SGK +I Y     + +YYLA A +E+Y  PS    L GL+ +  
Sbjct: 61  LAKLEELRQALERFRASGKPVIAYADGYSQGQYYLASAADEIYLNPSGSVELTGLSAETL 120

Query: 254 FLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTK 313
           F  G+L+K+G+E QV R+G+YKSA +  TR  MS E  E   ALLD+++  +L  V++++
Sbjct: 121 FFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLDSLWDQYLADVAASR 180

Query: 314 GKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355
           G   + +E  I+ G    E   E G +  + Y DE+ + LKE
Sbjct: 181 GLSPDALEALIDLGGDSAEEALEAGLVDGLAYRDELEARLKE 222

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. Interestingly, the single membrane spanning E. coli SppA carries out catalysis using a Ser-Lys dyad with the serine located in the conserved carboxy-terminal protease domain and the lysine in the non-conserved amino-terminal domain. Length = 222

>gnl|CDD|223689 COG0616, SppA, Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

 Score =  203 bits (519), Expect = 5e-60
 Identities = 112/338 (33%), Positives = 161/338 (47%), Gaps = 31/338 (9%)

Query: 327 GVYKVERLKEEGFITNVLYDDEVISMLKERLGVQKDKNLPMVDYRKYSGVRRWTLGLTGG 386
               VE L E   I    +   +I +L   L   K   L      K   + R       G
Sbjct: 8   KELLVEDLAERLKILF--WLLSLILLLAPTL---KAVGLLAKRLGKLEALLR-----KRG 57

Query: 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDAL 446
              IAVI   G+I     P       I G+ + E +R  R     KA ++RI+SPGG  +
Sbjct: 58  SKVIAVIHVEGAIVAGGGP----LRFIGGDDIEEILRAARADPSVKAVVLRINSPGGSVV 113

Query: 447 ASDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNL 506
           AS+L+ R ++ L   KPV+ S+   AASGGYY+A+AA  I+A+  ++TGSIGV++G  N 
Sbjct: 114 ASELIARALKRLRAKKPVVVSVGGYAASGGYYIALAADKIVADPSSITGSIGVISGAPNF 173

Query: 507 GKLYEKIGFNKEIISRGKYAEVLAAEQRPFRP---DEAELFAKSAQNAYKLFRDKAAFSR 563
            +L EK+G  KE+I+ G+Y ++L     PFRP   +E E+  K     Y  F DK A  R
Sbjct: 174 EELLEKLGVEKEVITAGEYKDIL----SPFRPLTEEEREILQKEIDETYDEFVDKVAEGR 229

Query: 564 SMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKANIPEDRQVTLVEMSKP 623
            ++ + +++ A GRVWTG  A   GLVD LGG   AV  A + A     + V +V   + 
Sbjct: 230 GLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAELAG---VKDVPVVYYLEE 286

Query: 624 SPTLPEILSSVGNSIAGVDRTLKELLQDLTFSDGVQAR 661
                 +L       A    +    L D   + G+ A 
Sbjct: 287 ----KSLLDLFAPIAA---ESAAAGLLDRLLARGLLAL 317

Length = 317

>gnl|CDD|213553 TIGR00706, SppA_dom, signal peptide peptidase SppA, 36K type

 Score =  168 bits (428), Expect = 2e-48
 Identities = 77/216 (35%), Positives = 126/216 (58%), Gaps = 12/216 (5%)

Query: 390 IAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASD 449
           IAV+  SG+I+ V             E  ++K+ ++++ K  KA ++RI+SPGG  +AS+
Sbjct: 2   IAVLEVSGAIADVSP-----------EDFLKKLERIKDDKTIKALVLRINSPGGTVVASE 50

Query: 450 LMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKL 509
            +++++  L   KPV+ASM  +AASGGYY++MAA  I A   T+TGSIGV+    N+ KL
Sbjct: 51  EIYKKLEKLKAKKPVVASMGGMAASGGYYISMAADEIFANPGTITGSIGVILQGANVEKL 110

Query: 510 YEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDK 569
            EK+G + E+I  G Y ++  +  R   P+E  +       +Y+ F    +  R++ V++
Sbjct: 111 AEKLGISFEVIKSGAYKDIG-SPTRELTPEEKNILQSLVNESYEQFVQVVSKGRNLPVEE 169

Query: 570 MEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQ 605
           ++++A GRV+TG  A    LVD LG    A+   K+
Sbjct: 170 VKKFADGRVFTGRQALKLRLVDKLGTEDDAIKWLKK 205

The related but duplicated, double-length protein SppA (protease IV) of E. coli was shown experimentally to degrade signal peptides as are released by protein processing and secretion. This protein shows stronger homology to the C-terminal region of SppA than to the N-terminal domain or to the related putative protease SuhB. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 208

>gnl|CDD|182860 PRK10949, PRK10949, protease 4; Provisional

 Score =  160 bits (408), Expect = 6e-42
 Identities = 141/478 (29%), Positives = 227/478 (47%), Gaps = 29/478 (6%)

Query: 148 GQIADQLKSRFSSGL---SLPQICENFVKAAYDPRIVGIYLHIEPLSCG-WGKVEEIRRH 203
            Q+  QL    S  L   SL  I     +A  D  I GI L ++  +      ++ I + 
Sbjct: 78  SQLGRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKA 137

Query: 204 VVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVG 263
           + +F+ SGK +        + +YYLA    ++Y  P     L+G      +   +L+K+ 
Sbjct: 138 LREFRDSGKPVYAVGDSYSQGQYYLASFANKIYLSPQGVVDLHGFATNGLYYKSLLDKLK 197

Query: 264 IEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERF 323
           +   V R+G YKSA +   R  MS    E  +  +  ++ N+L+ V++ +    + +  F
Sbjct: 198 VSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQITPQQL--F 255

Query: 324 -----INDGVYKVERLKEEGFITNVLYDD-----EVISMLKERLGVQKDKNLPMVDYRKY 373
                I +G+ KV     +  + N L D      E+   L +  G  K       +YR  
Sbjct: 256 PGAQGILEGLTKVGGDTAKYALDNKLVDALASSAEIEKALTKAFGWSKTDK----NYRAI 311

Query: 374 SGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKA 433
           S            G  IAVI A+G+I  +    +  + G  G+    +IR  R   + KA
Sbjct: 312 SIYDYALKTPADTGGSIAVIFANGAI--MDGEETPGNVG--GDTTAAQIRDARLDPKVKA 367

Query: 434 AIIRIDSPGGDALASDLMWREIRLLSES-KPVIASMSDVAASGGYYMAMAAGTILAENLT 492
            ++R++SPGG   AS+++  E+     + KPV+ SM  +AASGGY+++  A  I+A   T
Sbjct: 368 IVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPST 427

Query: 493 LTGSIGVVTGKFN-LGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNA 551
           LTGSIG+  G  N +    + IG + + +S    A+V   +  P  P+  ++   S +N 
Sbjct: 428 LTGSIGIF-GVINTVENSLDSIGVHTDGVSTSPLADVSITKALP--PEFQQMMQLSIENG 484

Query: 552 YKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKANI 609
           YK F    A SR  T +++++ AQG VWTG DA + GLVD+LG F  AVA A + A +
Sbjct: 485 YKRFITLVADSRHKTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKL 542

Length = 618

>gnl|CDD|216445 pfam01343, Peptidase_S49, Peptidase family S49

 Score =  143 bits (363), Expect = 4e-40
 Identities = 60/149 (40%), Positives = 87/149 (58%), Gaps = 1/149 (0%)

Query: 462 KPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIIS 521
           KPV+ASM + AASGGYY+A AA  I+A   T+ GSIGV+    N   L +K+G   + I 
Sbjct: 2   KPVVASMGNYAASGGYYLASAADKIVANPTTIVGSIGVIMQGLNYEGLLDKLGVKTDTIR 61

Query: 522 RGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTG 581
            G+Y +  +   RP  P+E E   +     Y++F    A +R++TVD++++ A+GRVWTG
Sbjct: 62  AGEYKDAGSIR-RPLTPEEREALQRMLDETYQMFVQTVAKNRNLTVDQVDKIAEGRVWTG 120

Query: 582 NDAASRGLVDALGGFSRAVAIAKQKANIP 610
             A   GLVD LG    A+A   + A + 
Sbjct: 121 QQAVEAGLVDELGTLDDAIARLAELAGVK 149

Length = 149

>gnl|CDD|132930 cd07019, S49_SppA_1, Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

 Score =  106 bits (265), Expect = 5e-26
 Identities = 76/214 (35%), Positives = 113/214 (52%), Gaps = 9/214 (4%)

Query: 390 IAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASD 449
           I V+ A+G+I                 Q    IR  R   + KA ++R++SPGG   AS+
Sbjct: 2   IGVVFANGAIVDGEETQGNVGGDTTAAQ----IRDARLDPKVKAIVLRVNSPGGSVTASE 57

Query: 450 LMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGK 508
           ++  E+    +  KPV+ S    AASGGY+++  A  I+A   TLTGSIG+      +  
Sbjct: 58  VIRAELAAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVEN 117

Query: 509 LYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAK-SAQNAYKLFRDKAAFSRSMTV 567
             + IG + + +S    A+V  +  R   P EA+L  + S +N YK F    A +R  T 
Sbjct: 118 SLDSIGVHTDGVSTSPLADV--SITRAL-PPEAQLGLQLSIENGYKRFITLVADARHSTP 174

Query: 568 DKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVA 601
           +++++ AQG VWTG DA + GLVD+LG F  AVA
Sbjct: 175 EQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVA 208

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-terminal domain, similar to Arabidopsis thaliana SppA1 peptidase. Others, including sohB peptidase, protein C and archaeal signal peptide peptidase, do not contain the amino-terminal domain. Interestingly, the single membrane spanning E. coli SppA carries out catalysis using a Ser-Lys dyad with the serine located in the conserved carboxy-terminal protease domain and the lysine in the non-conserved amino-terminal domain. Length = 211

>gnl|CDD|132933 cd07022, S49_Sppa_36K_type, Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

 Score =  100 bits (251), Expect = 5e-24
 Identities = 65/221 (29%), Positives = 97/221 (43%), Gaps = 20/221 (9%)

Query: 390 IAVIRASGSISRVRSPLSLSSSGIIG-EQLIEKIRKVRESKRYKAAIIRIDSPGGDA--- 445
           +AVI   G +   R     +SSG+   E +   IR        +A ++ IDSPGG+    
Sbjct: 2   VAVIPVHGVLVP-RGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGV 60

Query: 446 --LASDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGK 503
             LA       IR     KP++A ++ +AAS  Y++A AA  I+       GSIGVV   
Sbjct: 61  FELADA-----IRAARAGKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSIGVVASH 115

Query: 504 FNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRP--DEA-ELFAKSAQNAYKLFRDKAA 560
            +  K  EK G    +I  G +      +  P  P  DEA           Y +F    A
Sbjct: 116 VDQSKALEKAGLKVTLIFAGAH----KVDGNPDEPLSDEARARLQAEVDALYAMFVAAVA 171

Query: 561 FSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVA 601
            +R ++   +    +G V+ G +A + GL DA+G    A+A
Sbjct: 172 RNRGLSAAAVRA-TEGGVFRGQEAVAAGLADAVGTLDDALA 211

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. Length = 214

>gnl|CDD|132925 cd07014, S49_SppA, Signal peptide peptidase A

 Score = 93.5 bits (232), Expect = 5e-22
 Identities = 66/212 (31%), Positives = 97/212 (45%), Gaps = 40/212 (18%)

Query: 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLM 451
           V+ A+G I       S +   + G+    +IR  R   + KA ++R++SPGG   AS+++
Sbjct: 1   VVFANGVIVDGEESSSDTQGNVSGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVI 60

Query: 452 WREIRLLSES-KPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLY 510
             E+     + KPV+AS    AASGGY+++  A  I+A   TL GSIG+           
Sbjct: 61  RAELAAARAAGKPVVASGGGNAASGGYWISTPANYIVANPSTLVGSIGIFG--------- 111

Query: 511 EKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKM 570
                 +                             S +N YK F    A +R  T ++ 
Sbjct: 112 -----VQLADQL------------------------SIENGYKRFITLVADNRHSTPEQQ 142

Query: 571 -EEYAQGRVWTGNDAASRGLVDALGGFSRAVA 601
            ++ AQG VWTG DA + GLVD+LG F  AVA
Sbjct: 143 IDKIAQGGVWTGQDAKANGLVDSLGSFDDAVA 174

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-terminal domain (sometimes referred to as 67K type). Others, including sohB peptidase, protein C, protein 1510-N and archaeal signal peptide peptidase, do not contain the amino-terminal domain (sometimes referred to as 36K type). Interestingly, the single membrane spanning E. coli SppA carries out catalysis using a Ser-Lys dyad with the serine located in the conserved carboxy-terminal protease domain and the lysine in the non-conserved amino-terminal domain. This family also contains homologs that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Length = 177

>gnl|CDD|216445 pfam01343, Peptidase_S49, Peptidase family S49

 Score = 77.3 bits (191), Expect = 1e-16
 Identities = 36/134 (26%), Positives = 67/134 (50%), Gaps = 2/134 (1%)

Query: 226 YYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKT 285
           YYLA A +++ A P+      G+ +Q     G+L+K+G++    R G+YK AG    R+ 
Sbjct: 17  YYLASAADKIVANPTTIVGSIGVIMQGLNYEGLLDKLGVKTDTIRAGEYKDAGS--IRRP 74

Query: 286 MSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLY 345
           ++ E  E L  +LD  Y  ++  V+  +    + +++     V+  ++  E G +  +  
Sbjct: 75  LTPEEREALQRMLDETYQMFVQTVAKNRNLTVDQVDKIAEGRVWTGQQAVEAGLVDELGT 134

Query: 346 DDEVISMLKERLGV 359
            D+ I+ L E  GV
Sbjct: 135 LDDAIARLAELAGV 148

Length = 149

>gnl|CDD|132923 cd00394, Clp_protease_like, Caseinolytic protease (ClpP) is an ATP-dependent protease

 Score = 76.7 bits (189), Expect = 2e-16
 Identities = 54/203 (26%), Positives = 76/203 (37%), Gaps = 43/203 (21%)

Query: 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLM 451
           VI  +G I  V             +QL  +IR        KA ++ +++PGG   A   +
Sbjct: 1   VIFINGVIEDV-----------SADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNI 49

Query: 452 WREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYE 511
              ++  +  KPVIA +   AAS GYY+A AA  I+    T  GS G + G         
Sbjct: 50  VDALQ--ASRKPVIAYVGGQAASAGYYIATAANKIVMAPGTRVGSHGPIGG--------- 98

Query: 512 KIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKME 571
                              A+QR                    F    A +R  T +K+E
Sbjct: 99  --------YGGNGNPTAQEADQR------------IILYFIARFISLVAENRGQTTEKLE 138

Query: 572 E-YAQGRVWTGNDAASRGLVDAL 593
           E   +  V T  +A   GLVDAL
Sbjct: 139 EDIEKDLVLTAQEALEYGLVDAL 161

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Another family included in this class of enzymes is the signal peptide peptidase A (SppA; S49) which is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Mutagenesis studies suggest that the catalytic center of SppA comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-terminal domain. Others, including sohB peptidase, protein C, protein 1510-N and archaeal signal peptide peptidase, do not contain the amino-terminal domain. The third family included in this hierarchy is nodulation formation efficiency D (NfeD) which is a membrane-bound Clp-class protease and only found in bacteria and archaea. Majority of the NfeD genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named stomatin operon partner protein (STOPP). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 from Pyrococcus horikoshii has been shown to possess serine protease activity having a Ser-Lys catalytic dyad. Length = 161

>gnl|CDD|223689 COG0616, SppA, Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 50/201 (24%), Positives = 85/201 (42%), Gaps = 22/201 (10%)

Query: 173 KAAYDPRIVGIYLHIEPLSCGWGKV---EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYL 228
            A  DP +  + L I   S G G V   E I R +   +     ++  V        YY+
Sbjct: 91  AARADPSVKAVVLRIN--SPG-GSVVASELIARALKRLRAKKPVVV-SVGGYAASGGYYI 146

Query: 229 ACACEELYAPPSAYFSLYGLT----VQASF--LGGVLEKVGIEPQVQRIGKYKSAGDQLT 282
           A A +++ A PS+      +T    V +       +LEK+G+E +V   G+YK       
Sbjct: 147 ALAADKIVADPSS------ITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSP-F 199

Query: 283 RKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITN 342
           R    EE  E+L   +D  Y  ++DKV+  +G   E +++     V+  ++  E G +  
Sbjct: 200 RPLTEEER-EILQKEIDETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDE 258

Query: 343 VLYDDEVISMLKERLGVQKDK 363
           +   D+ +    E  GV+   
Sbjct: 259 LGGLDDAVKDAAELAGVKDVP 279

Length = 317

>gnl|CDD|132934 cd07023, S49_Sppa_N_C, Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

 Score = 63.7 bits (156), Expect = 2e-11
 Identities = 51/193 (26%), Positives = 83/193 (43%), Gaps = 41/193 (21%)

Query: 146 LRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKV---EEIRR 202
           + G I+D        G+    + E   KA  D  +  + L I   S G G V   EEI R
Sbjct: 7   IEGTISD------GGGIGADSLIEQLRKAREDDSVKAVVLRIN--SPG-GSVVASEEIYR 57

Query: 203 HVVDFKKSGKFIIGYV-PVC---GEKEYYLACACEELYAPPSA----------YFSLYGL 248
            +   +K+ K ++  +  V    G   YY+A A +++ A P+             +L  L
Sbjct: 58  EIRRLRKAKKPVVASMGDVAASGG---YYIAAAADKIVANPTTITGSIGVIGQGPNLEEL 114

Query: 249 TVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDK 308
                     L+K+GIE    + G  K  G    R  ++EE   +L AL+D+IY  ++D 
Sbjct: 115 ----------LDKLGIERDTIKSGPGKDKGS-PDRP-LTEEERAILQALVDDIYDQFVDV 162

Query: 309 VSSTKGKRKEDIE 321
           V+  +G   E ++
Sbjct: 163 VAEGRGMSGERLD 175

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. Interestingly, the single membrane spanning E. coli SppA carries out catalysis using a Ser-Lys dyad with the serine located in the conserved carboxy-terminal protease domain and the lysine in the non-conserved amino-terminal domain. Length = 208

>gnl|CDD|132929 cd07018, S49_SppA_67K_type, Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

 Score = 62.9 bits (154), Expect = 5e-11
 Identities = 61/230 (26%), Positives = 91/230 (39%), Gaps = 25/230 (10%)

Query: 392 VIRASGSI--SRVRSPLSLSSSGIIGE----QLIEKIRKVRESKRYKAAIIRIDSPGGD- 444
           V+  SGS+      SP  L   G   E     L+E + K  E  R K  ++ +D   G  
Sbjct: 2   VLDLSGSLVEQPPPSPPLLLGGGESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGL 61

Query: 445 ALASDLMWREIRLLSES-KPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSI---GVV 500
           A   +L  + +     S KPVIA  +D  + G YY+A AA  I        GS+   G+ 
Sbjct: 62  AKLEELR-QALERFRASGKPVIA-YADGYSQGQYYLASAADEIYLNPS---GSVELTGLS 116

Query: 501 TGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPF-R----PDEAELFAKSAQNAYKLF 555
                   L +K+G   ++   G+Y    A E  PF R    P+  E       + +  +
Sbjct: 117 AETLFFKGLLDKLGVEVQVFRVGEYK--SAVE--PFTRDDMSPEAREQTQALLDSLWDQY 172

Query: 556 RDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQ 605
               A SR ++ D +E        +  +A   GLVD L       A  K+
Sbjct: 173 LADVAASRGLSPDALEALIDLGGDSAEEALEAGLVDGLAYRDELEARLKE 222

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. Interestingly, the single membrane spanning E. coli SppA carries out catalysis using a Ser-Lys dyad with the serine located in the conserved carboxy-terminal protease domain and the lysine in the non-conserved amino-terminal domain. Length = 222

>gnl|CDD|213553 TIGR00706, SppA_dom, signal peptide peptidase SppA, 36K type

 Score = 58.5 bits (142), Expect = 9e-10
 Identities = 40/187 (21%), Positives = 83/187 (44%), Gaps = 2/187 (1%)

Query: 169 ENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYL 228
           +   +   D  I  + L I          EEI + +   K     +     +     YY+
Sbjct: 21  KKLERIKDDKTIKALVLRINSPGGTVVASEEIYKKLEKLKAKKPVVASMGGMAASGGYYI 80

Query: 229 ACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSE 288
           + A +E++A P       G+ +Q + +  + EK+GI  +V + G YK  G   TR+ ++ 
Sbjct: 81  SMAADEIFANPGTITGSIGVILQGANVEKLAEKLGISFEVIKSGAYKDIGSP-TRE-LTP 138

Query: 289 ENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDE 348
           E   +L +L++  Y  ++  VS  +    E++++F +  V+   +  +   +  +  +D+
Sbjct: 139 EEKNILQSLVNESYEQFVQVVSKGRNLPVEEVKKFADGRVFTGRQALKLRLVDKLGTEDD 198

Query: 349 VISMLKE 355
            I  LK+
Sbjct: 199 AIKWLKK 205

The related but duplicated, double-length protein SppA (protease IV) of E. coli was shown experimentally to degrade signal peptides as are released by protein processing and secretion. This protein shows stronger homology to the C-terminal region of SppA than to the N-terminal domain or to the related putative protease SuhB. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 208

>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional

 Score = 56.8 bits (138), Expect = 1e-08
 Identities = 55/172 (31%), Positives = 79/172 (45%), Gaps = 26/172 (15%)

Query: 435 IIRIDSPGG-----DALASDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAE 489
           ++R++SPGG        AS L     RL     P+  ++  VAASGGY MA  A  I+A 
Sbjct: 127 LLRLESPGGVVHGYGLAASQLQ----RLRDAGIPLTVAVDKVAASGGYMMACVADKIIAA 182

Query: 490 NLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLA------AEQRPFRPDEAEL 543
              + GSIGVV    N  +L +K   + E+ + G+Y   L        E R       E 
Sbjct: 183 PFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFGENTEEGR-------EK 235

Query: 544 FAKSAQNAYKLFRDKAAFSR-SMTVDKMEEYAQGRVWTGNDAASRGLVDALG 594
           F +  +  ++LF+D     R  + +DK+   A G  W G  A   GLVD + 
Sbjct: 236 FREELEETHQLFKDFVQRYRPQLDIDKV---ATGEHWYGQQALELGLVDEIQ 284

Length = 330

>gnl|CDD|132930 cd07019, S49_SppA_1, Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 30/175 (17%), Positives = 63/175 (36%), Gaps = 12/175 (6%)

Query: 174 AAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKE----YYLA 229
           A  DP++  I L +          E IR  +   + +GK +   V   G       Y+++
Sbjct: 33  ARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPV---VVSAGGAAASGGYWIS 89

Query: 230 CACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQ-VQRIGKYKSAGDQLTRKTMSE 288
                + A PS      G+    + +   L+ +G+    V        +  +     +  
Sbjct: 90  TPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITR----ALPP 145

Query: 289 ENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNV 343
           E    L   ++N Y  ++  V+  +    E I++     V+  +  K  G + ++
Sbjct: 146 EAQLGLQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSL 200

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-terminal domain, similar to Arabidopsis thaliana SppA1 peptidase. Others, including sohB peptidase, protein C and archaeal signal peptide peptidase, do not contain the amino-terminal domain. Interestingly, the single membrane spanning E. coli SppA carries out catalysis using a Ser-Lys dyad with the serine located in the conserved carboxy-terminal protease domain and the lysine in the non-conserved amino-terminal domain. Length = 211

>gnl|CDD|132932 cd07021, Clp_protease_NfeD_like, Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 13/130 (10%)

Query: 427 ESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTI 486
           + +   A ++ ID+PGG  + S L   ++ +L+   P IA ++D AAS G  +A+AA  I
Sbjct: 26  KEEGADAVVLDIDTPGG-RVDSALEIVDL-ILNSPIPTIAYVNDRAASAGALIALAADEI 83

Query: 487 LAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIIS--RGKYAEVLAAEQRPFRPDEAELF 544
                   G+   + G  N G   EK      + S  R K     AAE++   PD AE  
Sbjct: 84  YMAPGATIGAAEPIPGDGN-GAADEK------VQSYWRAKMRA--AAEKKGRDPDIAEAM 134

Query: 545 AKSAQNAYKL 554
                    +
Sbjct: 135 VDKDIEVPGV 144

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cleaving hydrophobic substrates. Difference in oligomeric form and catalytic residues between 1510-N (forming a dimer) and ClpP (forming a tetradecamer) shows a possible functional difference: 1510-N is likely to have a regulatory function while ClpP is involved in protein quality control. Length = 178

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	690
PRK10949	618	protease 4; Provisional	100.0
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	100.0
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	100.0
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	100.0
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	100.0
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	100.0
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	100.0
PRK11778	330	putative inner membrane peptidase; Provisional	100.0
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	100.0
PRK10949	618	protease 4; Provisional	100.0
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	100.0
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	100.0
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	100.0
PRK11778	330	putative inner membrane peptidase; Provisional	100.0
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	100.0
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	100.0
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	100.0
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	100.0
PF01343	154	Peptidase_S49: Peptidase family S49 peptidase clas	100.0
PF01343	154	Peptidase_S49: Peptidase family S49 peptidase clas	99.97
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	99.96
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	99.96
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	99.96
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	99.96
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	99.95
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	99.94
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.93
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	99.88
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	99.87
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	99.87
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	99.86
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.84
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	99.82
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	99.81
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	99.8
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	99.78
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	99.78
KOG1680	290	consensus Enoyl-CoA hydratase [Lipid transport and	99.77
PRK05980	260	enoyl-CoA hydratase; Provisional	99.76
PRK07854	243	enoyl-CoA hydratase; Provisional	99.76
PRK08138	261	enoyl-CoA hydratase; Provisional	99.76
PRK06563	255	enoyl-CoA hydratase; Provisional	99.76
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	99.76
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	99.76
PRK05862	257	enoyl-CoA hydratase; Provisional	99.75
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	99.75
PRK06142	272	enoyl-CoA hydratase; Provisional	99.75
PRK08258	277	enoyl-CoA hydratase; Provisional	99.75
PLN02600	251	enoyl-CoA hydratase	99.75
PRK07468	262	enoyl-CoA hydratase; Provisional	99.75
PRK07658	257	enoyl-CoA hydratase; Provisional	99.75
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	99.75
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	99.75
PRK07657	260	enoyl-CoA hydratase; Provisional	99.75
PRK06144	262	enoyl-CoA hydratase; Provisional	99.74
PRK09245	266	enoyl-CoA hydratase; Provisional	99.74
PRK09076	258	enoyl-CoA hydratase; Provisional	99.74
PRK08252	254	enoyl-CoA hydratase; Provisional	99.74
PRK06494	259	enoyl-CoA hydratase; Provisional	99.74
PRK08139	266	enoyl-CoA hydratase; Validated	99.74
PRK07509	262	enoyl-CoA hydratase; Provisional	99.74
PRK05981	266	enoyl-CoA hydratase; Provisional	99.74
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	99.74
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	99.74
PRK05995	262	enoyl-CoA hydratase; Provisional	99.74
PRK08140	262	enoyl-CoA hydratase; Provisional	99.74
PRK07511	260	enoyl-CoA hydratase; Provisional	99.73
PRK06127	269	enoyl-CoA hydratase; Provisional	99.73
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	99.73
PRK06072	248	enoyl-CoA hydratase; Provisional	99.73
PRK08150	255	enoyl-CoA hydratase; Provisional	99.73
PRK06023	251	enoyl-CoA hydratase; Provisional	99.73
PRK05869	222	enoyl-CoA hydratase; Validated	99.73
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	99.72
PRK07799	263	enoyl-CoA hydratase; Provisional	99.72
PRK06495	257	enoyl-CoA hydratase; Provisional	99.72
PRK07260	255	enoyl-CoA hydratase; Provisional	99.72
PRK05870	249	enoyl-CoA hydratase; Provisional	99.72
PLN02921	327	naphthoate synthase	99.72
PRK06190	258	enoyl-CoA hydratase; Provisional	99.72
PRK06210	272	enoyl-CoA hydratase; Provisional	99.72
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	99.72
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	99.72
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	99.72
PRK06688	259	enoyl-CoA hydratase; Provisional	99.71
PRK07938	249	enoyl-CoA hydratase; Provisional	99.71
PRK06143	256	enoyl-CoA hydratase; Provisional	99.71
PRK07659	260	enoyl-CoA hydratase; Provisional	99.71
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	99.71
PLN02888	265	enoyl-CoA hydratase	99.71
PRK08260	296	enoyl-CoA hydratase; Provisional	99.71
PRK12478	298	enoyl-CoA hydratase; Provisional	99.71
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	99.7
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	99.7
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	99.7
PRK05864	276	enoyl-CoA hydratase; Provisional	99.7
PRK07327	268	enoyl-CoA hydratase; Provisional	99.69
PRK08321	302	naphthoate synthase; Validated	99.69
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	99.69
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	99.69
PRK08259	254	enoyl-CoA hydratase; Provisional	99.69
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	99.68
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	99.68
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	99.67
PRK07827	260	enoyl-CoA hydratase; Provisional	99.67
PRK08272	302	enoyl-CoA hydratase; Provisional	99.67
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	99.67
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	99.67
PRK08788	287	enoyl-CoA hydratase; Validated	99.66
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	99.66
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	99.65
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	99.65
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	99.65
PRK08290	288	enoyl-CoA hydratase; Provisional	99.64
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	99.63
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	99.62
PRK11730	715	fadB multifunctional fatty acid oxidation complex	99.61
COG1030	436	NfeD Membrane-bound serine protease (ClpP class) [	99.61
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	99.6
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	99.6
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	99.6
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	99.6
PRK06213	229	enoyl-CoA hydratase; Provisional	99.59
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	99.58
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	99.58
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	99.57
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	99.57
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	99.57
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	99.56
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	99.54
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	99.54
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	99.54
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	99.54
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	99.54
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	99.53
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	99.52
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	99.51
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	99.5
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	99.5
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	99.5
COG1030	436	NfeD Membrane-bound serine protease (ClpP class) [	99.48
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	99.48
KOG1679	291	consensus Enoyl-CoA hydratase [Lipid transport and	99.48
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	99.48
COG0447	282	MenB Dihydroxynaphthoic acid synthase [Coenzyme me	99.46
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	99.43
KOG0840	275	consensus ATP-dependent Clp protease, proteolytic	99.37
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	99.34
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	99.33
PRK05995	262	enoyl-CoA hydratase; Provisional	99.32
PRK06190	258	enoyl-CoA hydratase; Provisional	99.31
PLN02600	251	enoyl-CoA hydratase	99.31
PRK07511	260	enoyl-CoA hydratase; Provisional	99.31
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	99.31
PRK06142	272	enoyl-CoA hydratase; Provisional	99.31
PRK06143	256	enoyl-CoA hydratase; Provisional	99.31
PRK08138	261	enoyl-CoA hydratase; Provisional	99.31
PRK05862	257	enoyl-CoA hydratase; Provisional	99.3
PRK05869	222	enoyl-CoA hydratase; Validated	99.3
PRK06688	259	enoyl-CoA hydratase; Provisional	99.3
PRK07468	262	enoyl-CoA hydratase; Provisional	99.3
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	99.3
PRK09245	266	enoyl-CoA hydratase; Provisional	99.29
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	99.29
PLN02888	265	enoyl-CoA hydratase	99.29
PRK08260	296	enoyl-CoA hydratase; Provisional	99.28
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	99.28
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	99.28
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	99.28
PRK06127	269	enoyl-CoA hydratase; Provisional	99.28
PRK06563	255	enoyl-CoA hydratase; Provisional	99.28
PRK06023	251	enoyl-CoA hydratase; Provisional	99.28
PRK05980	260	enoyl-CoA hydratase; Provisional	99.27
PRK06210	272	enoyl-CoA hydratase; Provisional	99.27
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	99.27
PRK07658	257	enoyl-CoA hydratase; Provisional	99.27
PRK08139	266	enoyl-CoA hydratase; Validated	99.27
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	99.27
PRK09076	258	enoyl-CoA hydratase; Provisional	99.27
KOG1680	290	consensus Enoyl-CoA hydratase [Lipid transport and	99.27
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	99.27
PRK06144	262	enoyl-CoA hydratase; Provisional	99.26
PRK07657	260	enoyl-CoA hydratase; Provisional	99.26
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	99.26
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	99.26
PRK07327	268	enoyl-CoA hydratase; Provisional	99.26
KOG1681	292	consensus Enoyl-CoA isomerase [Lipid transport and	99.26
PRK08150	255	enoyl-CoA hydratase; Provisional	99.25
PRK08258	277	enoyl-CoA hydratase; Provisional	99.25
PRK05864	276	enoyl-CoA hydratase; Provisional	99.25
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	99.24
PRK07260	255	enoyl-CoA hydratase; Provisional	99.24
PRK08140	262	enoyl-CoA hydratase; Provisional	99.24
PRK05870	249	enoyl-CoA hydratase; Provisional	99.23
PRK06494	259	enoyl-CoA hydratase; Provisional	99.23
PRK05981	266	enoyl-CoA hydratase; Provisional	99.23
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	99.22
PRK06495	257	enoyl-CoA hydratase; Provisional	99.22
PRK07799	263	enoyl-CoA hydratase; Provisional	99.21
PRK07854	243	enoyl-CoA hydratase; Provisional	99.21
PRK08252	254	enoyl-CoA hydratase; Provisional	99.2
PF01972	285	SDH_sah: Serine dehydrogenase proteinase; InterPro	99.2
PRK07938	249	enoyl-CoA hydratase; Provisional	99.2
PLN02921	327	naphthoate synthase	99.19
PRK07659	260	enoyl-CoA hydratase; Provisional	99.19
PRK08290	288	enoyl-CoA hydratase; Provisional	99.19
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	99.18
PRK12478	298	enoyl-CoA hydratase; Provisional	99.18
PRK08272	302	enoyl-CoA hydratase; Provisional	99.17
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	99.16
PRK08259	254	enoyl-CoA hydratase; Provisional	99.16
PRK07509	262	enoyl-CoA hydratase; Provisional	99.16
PRK08788	287	enoyl-CoA hydratase; Validated	99.16
PRK08321	302	naphthoate synthase; Validated	99.15
PRK07827	260	enoyl-CoA hydratase; Provisional	99.14
PRK06072	248	enoyl-CoA hydratase; Provisional	99.13
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	99.13
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	99.12
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	99.1
PRK11730	715	fadB multifunctional fatty acid oxidation complex	99.08
PF01972	285	SDH_sah: Serine dehydrogenase proteinase; InterPro	99.07
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	99.06
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	99.03
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	99.01
PRK06213	229	enoyl-CoA hydratase; Provisional	99.01
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	98.99
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	98.98
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	98.97
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	98.94
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	98.91
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	98.89
KOG1682	287	consensus Enoyl-CoA isomerase [Lipid transport and	98.87
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	98.85
KOG0840	275	consensus ATP-dependent Clp protease, proteolytic	98.84
KOG0016	266	consensus Enoyl-CoA hydratase/isomerase [Lipid tra	98.83
COG0447	282	MenB Dihydroxynaphthoic acid synthase [Coenzyme me	98.59
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	98.43
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	98.35
KOG1684	401	consensus Enoyl-CoA hydratase [Lipid transport and	98.35
KOG1679	291	consensus Enoyl-CoA hydratase [Lipid transport and	98.31
KOG1681	292	consensus Enoyl-CoA isomerase [Lipid transport and	98.1
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	98.04
TIGR03133	274	malonate_beta malonate decarboxylase, beta subunit	97.96
KOG1682	287	consensus Enoyl-CoA isomerase [Lipid transport and	97.87
KOG0016	266	consensus Enoyl-CoA hydratase/isomerase [Lipid tra	97.66
PRK07189	301	malonate decarboxylase subunit beta; Reviewed	97.53
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	97.42
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	97.34
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	97.34
PRK05654	292	acetyl-CoA carboxylase subunit beta; Validated	97.32
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	97.27
CHL00174	296	accD acetyl-CoA carboxylase beta subunit; Reviewed	97.26
TIGR00515	285	accD acetyl-CoA carboxylase, carboxyl transferase,	97.26
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	97.2
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	97.14
COG0777	294	AccD Acetyl-CoA carboxylase beta subunit [Lipid me	97.05
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	97.05
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	96.8
TIGR03134	238	malonate_gamma malonate decarboxylase, gamma subun	96.74
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	96.73
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	96.68
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	96.67
TIGR00515	285	accD acetyl-CoA carboxylase, carboxyl transferase,	96.63
COG4799	526	Acetyl-CoA carboxylase, carboxyltransferase compon	96.61
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	96.59
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	96.57
PRK05654	292	acetyl-CoA carboxylase subunit beta; Validated	96.38
CHL00174	296	accD acetyl-CoA carboxylase beta subunit; Reviewed	96.32
COG0777	294	AccD Acetyl-CoA carboxylase beta subunit [Lipid me	96.25
TIGR03133	274	malonate_beta malonate decarboxylase, beta subunit	96.21
TIGR03134	238	malonate_gamma malonate decarboxylase, gamma subun	96.12
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	95.71
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	95.24
PRK07189	301	malonate decarboxylase subunit beta; Reviewed	95.13
COG0825	317	AccA Acetyl-CoA carboxylase alpha subunit [Lipid m	94.57
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	94.31
COG0825	317	AccA Acetyl-CoA carboxylase alpha subunit [Lipid m	93.92
KOG1684	401	consensus Enoyl-CoA hydratase [Lipid transport and	93.38
PF00549	153	Ligase_CoA: CoA-ligase; InterPro: IPR005811 This e	91.62
COG4799	526	Acetyl-CoA carboxylase, carboxyltransferase compon	91.55
PF13607	138	Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin	90.43
COG3904	245	Predicted periplasmic protein [Function unknown]	89.04
PF06833	234	MdcE: Malonate decarboxylase gamma subunit (MdcE);	88.12
COG0074	293	SucD Succinyl-CoA synthetase, alpha subunit [Energ	87.99
COG0074	293	SucD Succinyl-CoA synthetase, alpha subunit [Energ	87.77
PF13607	138	Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin	87.2
cd06567	224	Peptidase_S41 C-terminal processing peptidase fami	86.83
COG3904	245	Predicted periplasmic protein [Function unknown]	86.55
PF06833	234	MdcE: Malonate decarboxylase gamma subunit (MdcE);	86.05
PF00549	153	Ligase_CoA: CoA-ligase; InterPro: IPR005811 This e	85.27
PF01740	117	STAS: STAS domain; InterPro: IPR002645 The STAS (S	85.26
KOG1683	380	consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA	83.51
cd07563	250	Peptidase_S41_IRBP Interphotoreceptor retinoid-bin	81.55
PF08496	155	Peptidase_S49_N: Peptidase family S49 N-terminal;	80.57
cd07041	109	STAS_RsbR_RsbS_like Sulphate Transporter and Anti-	80.37

>PRK10949 protease 4; Provisional

Probab=100.00  E-value=7.5e-95  Score=826.88  Aligned_cols=487  Identities=27%  Similarity=0.420  Sum_probs=444.6

Q ss_pred             ccccCCeEEEEEEceeecccccc--cc----------C----CCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCC-CHHH
Q 005581          134 ERVRKGSVLTMKLRGQIADQLKS--RF----------S----SGLSLPQICENFVKAAYDPRIVGIYLHIEPLSC-GWGK  196 (690)
Q Consensus       134 ~~~~~~~VlvI~l~G~I~~~~~~--~~----------~----~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg-~~~~  196 (690)
                      ..+++++|++|+++|+|+|+...  ++          .    ..+++.+++++|++|++||+|+||+|++|++|| ++++
T Consensus        51 ~~~~~~~vL~ldl~G~lve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~  130 (618)
T PRK10949         51 PETASRGALLLDISGVIVDKPSSSNKLSQLGRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVLDLKNFAGADQPS  130 (618)
T ss_pred             ccCCCCeEEEEECCCcccCCCCCCCcHHHHhhhhcccCCCccccccHHHHHHHHHHHhcCCCceEEEEEeCCCCCccHHH
Confidence            45789999999999999997652  11          0    137889999999999999999999999999966 5788


Q ss_pred             HHHHHHHHHHHhhcCCeEEEEecCcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccc
Q 005581          197 VEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS  276 (690)
Q Consensus       197 ~~eI~~aI~~~r~sgKpVvAy~~~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKs  276 (690)
                      ++||+++|++||++|||||||.+.+++++|||||+||+||++|.+.++++|+..+.+||+++|||+||+++++++|+||+
T Consensus       131 ~~eI~~ai~~fk~sGKpVvA~~~~~~s~~YyLASaAD~I~l~P~G~v~~~G~~~~~~~~k~lLdKlGV~~~v~r~G~yKs  210 (618)
T PRK10949        131 MQYIGKALREFRDSGKPVYAVGDSYSQGQYYLASFANKIYLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKS  210 (618)
T ss_pred             HHHHHHHHHHHHHhCCeEEEEecCccchhhhhhhhCCEEEECCCceEEEeeeecchhhHHHHHHHcCCeEEEEEecCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhc--------CcccHHHHHhcCCeeEecchhH
Q 005581          277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFIND--------GVYKVERLKEEGFITNVLYDDE  348 (690)
Q Consensus       277 a~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~--------~v~~a~eAl~~GLID~i~~~de  348 (690)
                      +++||+|++||+++||+++.+++++|++|++.|+++|+++++++...+++        ..+++++|++.||||++++.+|
T Consensus       211 A~epf~r~~mS~e~Re~~~~ll~~l~~~f~~~VA~~R~l~~~~v~~~a~~~~~~l~~~~~~~a~~Al~~GLVD~l~~~de  290 (618)
T PRK10949        211 AVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQITPQQLFPGAQGILEGLTKVGGDTAKYALDNKLVDALASSAE  290 (618)
T ss_pred             CCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCccHHHHHHCCCCCcCCCHHH
Confidence            99999999999999999999999999999999999999999999654443        3579999999999999999999


Q ss_pred             HHHHHHHHhCCCCC-CCCCcccccccccccccccccCCCCCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHh
Q 005581          349 VISMLKERLGVQKD-KNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRE  427 (690)
Q Consensus       349 ~~~~l~~~~g~~~~-~~~~~v~~~~y~~~~~~~~~~~~~~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~  427 (690)
                      +.+.+++.+|.+++ +.++.|++.+|.....     ...+++||||+++|+|.++.+.    .+.++.+.+.+.|++|.+
T Consensus       291 ~~~~l~~~~g~~~~~~~~~~v~~~~y~~~~~-----~~~~~~Iavi~~~G~I~~g~~~----~g~~~~~~~~~~l~~a~~  361 (618)
T PRK10949        291 IEKALTKAFGWSKTDKNYRAISIYDYALKTP-----ADTGGSIAVIFANGAIMDGEET----PGNVGGDTTAAQIRDARL  361 (618)
T ss_pred             HHHHHHHHhCCCccCCccceeeHHHhhcccc-----CCCCCeEEEEEEEEEEcCCCCc----CCCcCHHHHHHHHHHHHh
Confidence            99999999997544 4688999999965221     2346899999999999986532    234567899999999999


Q ss_pred             CCCceEEEEEccCCCcchhhhhHHHHHHHHhc-CCCCEEEEECccccHHHHHHHHhcCeEEEecCceeccccccccccch
Q 005581          428 SKRYKAAIIRIDSPGGDALASDLMWREIRLLS-ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNL  506 (690)
Q Consensus       428 D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~-~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~  506 (690)
                      |++|||||||||||||++.+++.|+++|++++ ++|||||+|+++||||||||||+||+|||+|+|+||||||++.++++
T Consensus       362 D~~vkaVvLrInSpGGs~~ase~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~  441 (618)
T PRK10949        362 DPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTV  441 (618)
T ss_pred             CCCCcEEEEEecCCCCcHHHHHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCH
Confidence            99999999999999999999999999999885 58999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHH
Q 005581          507 GKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAAS  586 (690)
Q Consensus       507 ~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e  586 (690)
                      +++++|+||+.+.+++++++++  ++.++++|++++.+|..+++.|++|++.|+++|+++.++++++++||+|+|++|++
T Consensus       442 ~~ll~klGV~~~~~~~~~~~~~--~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v~~ia~Grv~tg~~A~~  519 (618)
T PRK10949        442 ENSLDSIGVHTDGVSTSPLADV--SITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQIDKIAQGHVWTGQDAKA  519 (618)
T ss_pred             HHHHHhcCCceeEEeccccCCc--cccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhcCCcccHHHHHH
Confidence            9999999999999999999985  68999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccccChHHHHHHHHHHcCCCCCCceEEEEecCCCCCHHHHHhcc
Q 005581          587 RGLVDALGGFSRAVAIAKQKANIPEDRQVTLVEMSKPSPTLPEILSSV  634 (690)
Q Consensus       587 ~GLVD~ig~~~~ai~~a~~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~  634 (690)
                      +||||++|++++|++.|++++++++   +.++.|++++..+..++.+.
T Consensus       520 ~GLVD~lG~~~~ai~~a~~~a~~~~---~~v~~~~~~~~~~~~l~~~~  564 (618)
T PRK10949        520 NGLVDSLGDFDDAVAKAAELAKLKQ---WHLNWYVDEPTFFDMVMDQM  564 (618)
T ss_pred             cCCCccCCCHHHHHHHHHHHcCCCC---ceEEEecCCCCHHHHHHHHH
Confidence            9999999999999999999999974   67788887766666665543

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=100.00  E-value=2e-92  Score=807.62  Aligned_cols=492  Identities=29%  Similarity=0.433  Sum_probs=451.4

Q ss_pred             ccccccCCeEEEEEEce-eecccccc-c----cC-----CCCCHHHHHHHHHHhhcCCCceEEEEEcCC-CCCCHHHHHH
Q 005581          132 PWERVRKGSVLTMKLRG-QIADQLKS-R----FS-----SGLSLPQICENFVKAAYDPRIVGIYLHIEP-LSCGWGKVEE  199 (690)
Q Consensus       132 p~~~~~~~~VlvI~l~G-~I~~~~~~-~----~~-----~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s-~Gg~~~~~~e  199 (690)
                      +...+++++|++|+++| .|+|+... .    +.     ..+++.+++++|++|++||+|+||+|++|+ +||++++++|
T Consensus        35 ~~~~~~~~~~L~l~~~gg~i~e~~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~e  114 (584)
T TIGR00705        35 PSQKLVSSGALLLDLPVGDVTDQSPRVSLQGTLLGNPKGRAISLFDIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVE  114 (584)
T ss_pred             CCcCCCCCeEEEEECCCCcccCcCCCCchhhhhccCCCcCCcCHHHHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHH
Confidence            44557899999999995 99998763 2    11     147899999999999999999999999997 5778999999


Q ss_pred             HHHHHHHHhhcCCeEEEEecCcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCC
Q 005581          200 IRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD  279 (690)
Q Consensus       200 I~~aI~~~r~sgKpVvAy~~~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~e  279 (690)
                      |+++|++||++|||||||++.+++++|||||+||+|||+|.+.+|++|+.++.+||+++|+|+||+++++++|+||++++
T Consensus       115 i~~ai~~fk~sgKpVvA~~~~~~s~~YylAs~AD~I~~~p~G~v~~~G~~~~~~~~k~~ldKlGV~~~v~r~G~yKsa~e  194 (584)
T TIGR00705       115 IGSALSEFKDSGKPVYAYGTNYSQGQYYLASFADEIILNPMGSVDLHGFYTETLFYKGMLDKLGVRWHXFRVGTYKGAVE  194 (584)
T ss_pred             HHHHHHHHHhcCCeEEEEEccccchhhhhhhhCCEEEECCCceEEeeceecccccHHHHHHHcCCeEEEeeccccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcc--------cHHHHHhcCCeeEecchhHHHH
Q 005581          280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVY--------KVERLKEEGFITNVLYDDEVIS  351 (690)
Q Consensus       280 p~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~--------~a~eAl~~GLID~i~~~de~~~  351 (690)
                      ||++++||+++||+++.+++++|++|++.|+++|+++++++++++++.++        ++++|++.||||++++.+|+.+
T Consensus       195 pf~r~~mS~e~re~~~~~l~~l~~~f~~~Va~~R~l~~~~~~~~a~~~~~~~~~~~g~~a~~A~~~gLVD~l~~~de~~~  274 (584)
T TIGR00705       195 PFSRKDMSPEARRNYQRWLGELWQNYLSSVSRNRAIPVQQLAPYAQGLLELLQKLNGDGARYALAEKLVTAVCSYAEAGK  274 (584)
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhHHHHHHHhhCCchHHHHHHCCCcccCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999888765        8999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCCcccccccccccccccccCCCCCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCc
Q 005581          352 MLKERLGVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRY  431 (690)
Q Consensus       352 ~l~~~~g~~~~~~~~~v~~~~y~~~~~~~~~~~~~~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~V  431 (690)
                      .+++.+|.+++++++.|++.+|....++.   ...+++||||+++|+|.++.+.    .+.++.+.+.+.|+++++|++|
T Consensus       275 ~l~~~~g~~~~~~~~~v~~~~y~~~~~~~---~~~~~~vavI~~~G~I~~~~~~----~~~~~~~~~~~~l~~a~~D~~V  347 (584)
T TIGR00705       275 ALKFLFEDDYDKAKNFISLDDYNRDRPQR---HDVQDKIGIVHLEGPIADGRDT----EGNTGGDTVAALLRVARSDPDI  347 (584)
T ss_pred             HHHHHhCCCccCCcceeeHHHhhhhcccc---cCCCCeEEEEEEEEEEcCCCCc----ccccCHHHHHHHHHHHhhCCCc
Confidence            99999998765678999999997654331   2346899999999999975432    2345678999999999999999


Q ss_pred             eEEEEEccCCCcchhhhhHHHHHHHHhcC-CCCEEEEECccccHHHHHHHHhcCeEEEecCceeccccccccccchHHHH
Q 005581          432 KAAIIRIDSPGGDALASDLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLY  510 (690)
Q Consensus       432 kaVVLrinSpGG~~~as~~i~~~I~~l~~-~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~  510 (690)
                      |+||||||||||++++++.|+++|+.+++ +|||||+|+|+|+||||||||+||+|||+|+|+||||||++..+++++++
T Consensus       348 kaIVLrinSpGGs~~ase~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l  427 (584)
T TIGR00705       348 KAVVLRINSPGGSVFASEIIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSL  427 (584)
T ss_pred             eEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHH
Confidence            99999999999999999999999998855 69999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCc
Q 005581          511 EKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLV  590 (690)
Q Consensus       511 ~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLV  590 (690)
                      +|+||+.+.+++|+++++  ++.+|+|+++++.++..++++|++|++.|+++|+++.++++.+++||+|+|+||+++|||
T Consensus       428 ~klGi~~~~~~t~~~~~~--s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLV  505 (584)
T TIGR00705       428 DRIGVHVDGVSTHELANV--SLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLV  505 (584)
T ss_pred             HhcCCceEEEeccCcCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCc
Confidence            999999999999999986  789999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccChHHHHHHHHHHcCCCCCCceEEEEecCCCCCHHHHHhcc
Q 005581          591 DALGGFSRAVAIAKQKANIPEDRQVTLVEMSKPSPTLPEILSSV  634 (690)
Q Consensus       591 D~ig~~~~ai~~a~~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~  634 (690)
                      |++|++++|++.|+++++++++  +.+..+++++.++..++.+.
T Consensus       506 D~ig~~~~Ai~~a~~la~~~~~--~~v~~~~~~~~~~~~~~~~~  547 (584)
T TIGR00705       506 DALGGLDEAVAKAAKLAHCREQ--WSVEVYKDSATLGSELLQNL  547 (584)
T ss_pred             ccCCCHHHHHHHHHHHcCCCCC--ceEEEeCCCCCHHHHHHHHH
Confidence            9999999999999999999433  67788888776666666543

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=100.00  E-value=3.2e-44  Score=366.00  Aligned_cols=213  Identities=38%  Similarity=0.604  Sum_probs=203.8

Q ss_pred             EEEEEceeeccccccc--------cCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCe
Q 005581          142 LTMKLRGQIADQLKSR--------FSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKF  213 (690)
Q Consensus       142 lvI~l~G~I~~~~~~~--------~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKp  213 (690)
                      ++|+++|.|.++....        ..+..++.++++.|++|++||+|++|+|++|+|||+++++++|+++|++||+++||
T Consensus         1 l~i~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kp   80 (222)
T cd07018           1 LVLDLSGSLVEQPPPSPPLLLGGGESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKP   80 (222)
T ss_pred             CEEcCCCcccccCCCCChhhhccCCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCe
Confidence            4789999999876532        12468899999999999999999999999999999999999999999999989999


Q ss_pred             EEEEecCcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHH
Q 005581          214 IIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEM  293 (690)
Q Consensus       214 VvAy~~~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~  293 (690)
                      ||||++.++++||||||+||+|||+|++.+|++|+.++.+||+++|+|+||+++++++|+||++++||++++||+++|++
T Consensus        81 Via~~~~~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~  160 (222)
T cd07018          81 VIAYADGYSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQ  160 (222)
T ss_pred             EEEEeCCCCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHHH
Q 005581          294 LTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLK  354 (690)
Q Consensus       294 ~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~  354 (690)
                      ++++++++|++|++.|+++|+++.+.++++.++++|++++|++.||||++++.||+++.++
T Consensus       161 ~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~l~  221 (222)
T cd07018         161 TQALLDSLWDQYLADVAASRGLSPDALEALIDLGGDSAEEALEAGLVDGLAYRDELEARLK  221 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHCCCCCcCCcHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999998875

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=100.00  E-value=4.4e-44  Score=382.37  Aligned_cols=217  Identities=41%  Similarity=0.689  Sum_probs=207.4

Q ss_pred             cEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEE
Q 005581          389 QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASM  468 (690)
Q Consensus       389 ~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v  468 (690)
                      +||||+++|+|..+..+..    .++.+.+.+.|+++..|+++|+|+|+||||||++.+++.|+++|++++++|||+++|
T Consensus        60 ~Iavi~~~G~I~~~~~~~~----~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~PV~v~v  135 (317)
T COG0616          60 VIAVIHVEGAIVAGGGPLR----FIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKKPVVVSV  135 (317)
T ss_pred             EEEEEEeeeeeecCCCccc----cccHHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhcCCEEEEE
Confidence            8999999999997653322    567899999999999999999999999999999999999999999998777999999


Q ss_pred             CccccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHH
Q 005581          469 SDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSA  548 (690)
Q Consensus       469 ~g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i  548 (690)
                      +++||||||||||+||+|||+|+|++|||||+.+.+++.++++|+||+.+.+++|.+|+++ ++++++++++++.+|+.+
T Consensus       136 ~~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~-~~~~~~t~e~~~~~q~~~  214 (317)
T COG0616         136 GGYAASGGYYIALAADKIVADPSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDIL-SPFRPLTEEEREILQKEI  214 (317)
T ss_pred             CCeecchhhhhhccCCEEEecCCceeeeceeEEecCCHHHHHHhcCCceeeeecccccccc-CcccCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999 999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHHHHcCCC
Q 005581          549 QNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKANIP  610 (690)
Q Consensus       549 ~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~~~a~l~  610 (690)
                      ++.|+.|++.|+++|+++.+++..+++||+|+|++|+++||||++|++++++..+++.++..
T Consensus       215 ~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~~~~~~~~  276 (317)
T COG0616         215 DETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAELAGVK  276 (317)
T ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999999999998743

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=100.00  E-value=1e-41  Score=344.11  Aligned_cols=206  Identities=22%  Similarity=0.375  Sum_probs=197.8

Q ss_pred             eEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec
Q 005581          140 SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP  219 (690)
Q Consensus       140 ~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~  219 (690)
                      .|++|+|+|+|.          .+.+++.+.|+++.+|++|++|+|+++++||++.++++|+++|.+++ ++||||||++
T Consensus         1 ~v~vi~i~g~i~----------~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~-~~kpvia~v~   69 (207)
T TIGR00706         1 TIAILPVSGAIA----------VSPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLK-AKKPVVASMG   69 (207)
T ss_pred             CEEEEEEEEEEe----------cCHHHHHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhc-CCCCEEEEEC
Confidence            489999999997          35789999999999999999999999999999999999999999998 6999999998


Q ss_pred             -CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHH
Q 005581          220 -VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALL  298 (690)
Q Consensus       220 -~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~l  298 (690)
                       .|+|+|||||++||+|||+|++.+|++|+.++.+||+++|+|+||+++++++|+||++++||  +++|+++|+++++++
T Consensus        70 g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~--~~~s~~~~e~~~~~l  147 (207)
T TIGR00706        70 GVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPT--RELTPEERDILQNLV  147 (207)
T ss_pred             CccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCC--CCCCHHHHHHHHHHH
Confidence             57799999999999999999999999999999999999999999999999999999999999  589999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHhC
Q 005581          299 DNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLG  358 (690)
Q Consensus       299 d~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~g  358 (690)
                      +++|++|++.|+++|+++.+++++++++++|++++|+++||||++++.|++++.+++..|
T Consensus       148 ~~~~~~f~~~va~~R~~~~~~~~~~~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~~~~~~  207 (207)
T TIGR00706       148 NESYEQFVQVVAKGRNLPVEDVKKFADGRVFTGRQALKLRLVDKLGTEDDALKWLAELSG  207 (207)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHhcCCcccHHHHHHcCCCcccCCHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999987654

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=100.00  E-value=5.3e-41  Score=340.55  Aligned_cols=210  Identities=21%  Similarity=0.285  Sum_probs=198.9

Q ss_pred             eEEEEEEceeecccccc--ccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEE
Q 005581          140 SVLTMKLRGQIADQLKS--RFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGY  217 (690)
Q Consensus       140 ~VlvI~l~G~I~~~~~~--~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy  217 (690)
                      +|++|+++|+|.++...  .+.+..++.++.++|+++++||+|++|+|+++++||++.+.++|+++|+++++ +||||||
T Consensus         1 ~v~vi~~~g~i~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~-~KpViA~   79 (214)
T cd07022           1 GVAVIPVHGVLVPRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARA-GKPIVAF   79 (214)
T ss_pred             CEEEEEEEEEEeCCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhc-CCCEEEE
Confidence            58999999999987552  23455789999999999999999999999999999999999999999999988 9999999


Q ss_pred             ec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHH
Q 005581          218 VP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTA  296 (690)
Q Consensus       218 ~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~  296 (690)
                      ++ .|+++||+||++||+|||+|++.+|++|+.++.+|++++|+|+||+++++++|+||++++||.  +||+++||++++
T Consensus        80 v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~--~~s~~~re~~~~  157 (214)
T cd07022          80 VNGLAASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDE--PLSDEARARLQA  157 (214)
T ss_pred             ECCchhhHHHHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCC--CCCHHHHHHHHH
Confidence            99 689999999999999999999999999999999999999999999999999999999999994  899999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHH
Q 005581          297 LLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISML  353 (690)
Q Consensus       297 ~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l  353 (690)
                      +++++|++|++.|+++|+++.+++++++ +++|++++|++.||||+|++.+|+++.+
T Consensus       158 ~l~~~~~~f~~~V~~~R~~~~~~~~~~~-~~~~~~~~Al~~gLvD~i~~~~~~~~~~  213 (214)
T cd07022         158 EVDALYAMFVAAVARNRGLSAAAVRATE-GGVFRGQEAVAAGLADAVGTLDDALAAL  213 (214)
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHhh-cCeeeHHHHHHcCCCcccCCHHHHHHHh
Confidence            9999999999999999999999999988 9999999999999999999999998765

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=100.00  E-value=4.8e-40  Score=332.11  Aligned_cols=206  Identities=25%  Similarity=0.407  Sum_probs=196.9

Q ss_pred             eEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec
Q 005581          140 SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP  219 (690)
Q Consensus       140 ~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~  219 (690)
                      .|++|+++|+|.++      +..++.++.++|+++.+||+|++|+|+++++||++.+.++++++++.+++++||||||++
T Consensus         1 ~v~vi~i~g~i~~~------~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~v~   74 (208)
T cd07023           1 KIAVIDIEGTISDG------GGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMG   74 (208)
T ss_pred             CEEEEEEEEEEcCC------CCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence            37999999999975      236789999999999999999999999999999999999999999999999999999999


Q ss_pred             -CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHH
Q 005581          220 -VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALL  298 (690)
Q Consensus       220 -~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~l  298 (690)
                       .|+++||+|||+||+|||+|++.+|++|+.++.+||+++|+|+||+++++++|+||++++|+  ++||+++|+++++++
T Consensus        75 g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~--~~~s~~~~e~~~~~l  152 (208)
T cd07023          75 DVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPD--RPLTEEERAILQALV  152 (208)
T ss_pred             CcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCC--CCCCHHHHHHHHHHH
Confidence             57899999999999999999999999999999999999999999999999999999999995  699999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHH
Q 005581          299 DNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISML  353 (690)
Q Consensus       299 d~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l  353 (690)
                      +++|++|++.|+++|+++.+++++++++.+|++++|+++||||++++.||+++.+
T Consensus       153 ~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~a~~A~~~gLiD~i~~~~~~~~~~  207 (208)
T cd07023         153 DDIYDQFVDVVAEGRGMSGERLDKLADGRVWTGRQALELGLVDELGGLDDAIAKA  207 (208)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHhcCCcEEEHHHHHHcCCCcccCCHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999988754

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>PRK11778 putative inner membrane peptidase; Provisional

Probab=100.00  E-value=3.4e-40  Score=349.86  Aligned_cols=225  Identities=25%  Similarity=0.378  Sum_probs=193.1

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhc-CCCCEE
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLS-ESKPVI  465 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~-~~KPVV  465 (690)
                      +++|+||+++|+|..+..       ....+.+.+.++.+. ++  ++|||++|||||++.+++.++..|.+++ ++|||+
T Consensus        89 ~~~v~VI~~~G~I~~~~~-------~~l~e~i~a~l~~A~-~~--~aVvLridSpGG~v~~s~~a~~~l~~lr~~~kpVv  158 (330)
T PRK11778         89 KPRLFVLDFKGDIDASEV-------ESLREEITAILAVAK-PG--DEVLLRLESPGGVVHGYGLAASQLQRLRDAGIPLT  158 (330)
T ss_pred             CCeEEEEEEEEEECCCcc-------hhhHHHHHHHHHhcc-CC--CeEEEEEeCCCCchhHHHHHHHHHHHHHhcCCCEE
Confidence            479999999999986431       112344444444444 33  6999999999999999999999888875 479999


Q ss_pred             EEECccccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHH
Q 005581          466 ASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFA  545 (690)
Q Consensus       466 a~v~g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~  545 (690)
                      ++|+++|+||||||||+||.|||+|++++|||||++..++++++++|+||+++.+++|+||+.+ +|++++||++|+.++
T Consensus       159 a~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~-~pf~~~see~Re~~q  237 (330)
T PRK11778        159 VAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTL-TLFGENTEEGREKFR  237 (330)
T ss_pred             EEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCC-CCCCCCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999998 899999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHHHHcCCCCCCceEEEEecCCCC
Q 005581          546 KSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKANIPEDRQVTLVEMSKPSP  625 (690)
Q Consensus       546 ~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~~~a~l~~~~~~~~~~~~~~~~  625 (690)
                      +.++++|+.|++.|+++|+  ...++.+++|++|+|++|+++||||+||+.++++..+.+.+++      ..+.|...++
T Consensus       238 ~~Ld~~y~~F~~~Va~~R~--~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~~~~~~v------~~~~~~~~~~  309 (330)
T PRK11778        238 EELEETHQLFKDFVQRYRP--QLDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELMKEHEV------LEVRYQQKKK  309 (330)
T ss_pred             HHHHHHHHHHHHHHHhcCC--cCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHHHhcCCc------eeEecCCCCC
Confidence            9999999999999999996  2356778999999999999999999999999999988876554      2355665544


Q ss_pred             CHHHHH
Q 005581          626 TLPEIL  631 (690)
Q Consensus       626 ~~~~~l  631 (690)
                       +.+.+
T Consensus       310 -~~~~l  314 (330)
T PRK11778        310 -LAERL  314 (330)
T ss_pred             -HHHHH
Confidence             44443

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=100.00  E-value=7.9e-40  Score=330.33  Aligned_cols=207  Identities=38%  Similarity=0.655  Sum_probs=198.9

Q ss_pred             cEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEE
Q 005581          389 QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASM  468 (690)
Q Consensus       389 ~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v  468 (690)
                      +||||+++|+|.            .+.+++.+.|+++.+|++|++|||++|||||++.+++.|++.|+.++++|||||++
T Consensus         1 ~v~vi~i~g~i~------------~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~~~kpvia~v   68 (207)
T TIGR00706         1 TIAILPVSGAIA------------VSPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAKKPVVASM   68 (207)
T ss_pred             CEEEEEEEEEEe------------cCHHHHHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            589999999997            23689999999999999999999999999999999999999999987779999999


Q ss_pred             CccccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHH
Q 005581          469 SDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSA  548 (690)
Q Consensus       469 ~g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i  548 (690)
                      +|.|+||||+||++||+|+|+|++.+||+||+..+++++++++|+||+++.++.|+||++. +|++++||++++.+++.+
T Consensus        69 ~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~-~~~~~~s~~~~e~~~~~l  147 (207)
T TIGR00706        69 GGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIG-SPTRELTPEERDILQNLV  147 (207)
T ss_pred             CCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCC-CCCCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999 788999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHHHHcC
Q 005581          549 QNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKAN  608 (690)
Q Consensus       549 ~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~~~a~  608 (690)
                      ++.|+.|++.|+++|+++.++++.+++|++|+|++|+++||||++++.+++++.+++++|
T Consensus       148 ~~~~~~f~~~va~~R~~~~~~~~~~~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~~~~~~  207 (207)
T TIGR00706       148 NESYEQFVQVVAKGRNLPVEDVKKFADGRVFTGRQALKLRLVDKLGTEDDALKWLAELSG  207 (207)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHhcCCcccHHHHHHcCCCcccCCHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999988764

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>PRK10949 protease 4; Provisional

Probab=100.00  E-value=2.3e-39  Score=370.77  Aligned_cols=219  Identities=16%  Similarity=0.266  Sum_probs=206.9

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEE
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIG  216 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvA  216 (690)
                      .++.|++|+++|+|.+....  .+.++.+.+.+.|++|.+|++||||||++|||||++.++++|+++|+++|+++|||||
T Consensus       324 ~~~~Iavi~~~G~I~~g~~~--~g~~~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~~i~~~r~~gKPVva  401 (618)
T PRK10949        324 TGGSIAVIFANGAIMDGEET--PGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVV  401 (618)
T ss_pred             CCCeEEEEEEEEEEcCCCCc--CCCcCHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHHHHHHHHhcCCcEEE
Confidence            46799999999999976432  2457889999999999999999999999999999999999999999999999999999


Q ss_pred             Eec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHH
Q 005581          217 YVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLT  295 (690)
Q Consensus       217 y~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~  295 (690)
                      ++. .|+|+||||||+||+|||+|++.+|++||.+..++++++|+|+||+++.++.|+|+.. .+  .+++|+++|+.++
T Consensus       402 s~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~-~~--~~~~s~e~~~~~q  478 (618)
T PRK10949        402 SMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADV-SI--TKALPPEFQQMMQ  478 (618)
T ss_pred             EECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCc-cc--cCCCCHHHHHHHH
Confidence            997 8999999999999999999999999999999999999999999999999999999975 44  3799999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHhCCC
Q 005581          296 ALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGVQ  360 (690)
Q Consensus       296 ~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~g~~  360 (690)
                      .+++++|++|++.|+++|+++.++++++++|++|++++|+++||||++++.+++++.+++.+|++
T Consensus       479 ~~ld~~y~~F~~~Va~~R~~~~~~v~~ia~Grv~tg~~A~~~GLVD~lG~~~~ai~~a~~~a~~~  543 (618)
T PRK10949        479 LSIENGYKRFITLVADSRHKTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKLK  543 (618)
T ss_pred             HHHHHHHHHHHHHHHhhCCCCHHHHHHHhcCCcccHHHHHHcCCCccCCCHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999885

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=100.00  E-value=3.2e-39  Score=327.54  Aligned_cols=212  Identities=28%  Similarity=0.381  Sum_probs=198.8

Q ss_pred             cEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEE
Q 005581          389 QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASM  468 (690)
Q Consensus       389 ~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v  468 (690)
                      .|+||+++|+|.+..+..+...+..+.+++.++|+++.+|++||+|||++||+||+....+.+.++|+.++++|||||++
T Consensus         1 ~v~vi~~~g~i~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~~KpViA~v   80 (214)
T cd07022           1 GVAVIPVHGVLVPRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFV   80 (214)
T ss_pred             CEEEEEEEEEEeCCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhcCCCEEEEE
Confidence            48999999999976543332344567899999999999999999999999999999999999999999885589999999


Q ss_pred             CccccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHH
Q 005581          469 SDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSA  548 (690)
Q Consensus       469 ~g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i  548 (690)
                      +|.|+||||+||++||+|||+|++.+|+||++...++++++++|+||+++.++.|+||++. .|++++|+++|+.+++.+
T Consensus        81 ~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~-~~~~~~s~~~re~~~~~l  159 (214)
T cd07022          81 NGLAASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDG-NPDEPLSDEARARLQAEV  159 (214)
T ss_pred             CCchhhHHHHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCC-CCCCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999 889999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHH
Q 005581          549 QNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAI  602 (690)
Q Consensus       549 ~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~  602 (690)
                      ++.|++|++.|+++|+++.++++.++ |++|+|++|++.||||+|+++++++++
T Consensus       160 ~~~~~~f~~~V~~~R~~~~~~~~~~~-~~~~~~~~Al~~gLvD~i~~~~~~~~~  212 (214)
T cd07022         160 DALYAMFVAAVARNRGLSAAAVRATE-GGVFRGQEAVAAGLADAVGTLDDALAA  212 (214)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHhh-cCeeeHHHHHHcCCCcccCCHHHHHHH
Confidence            99999999999999999999999988 999999999999999999999998875

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=100.00  E-value=4.5e-38  Score=318.43  Aligned_cols=208  Identities=15%  Similarity=0.223  Sum_probs=196.0

Q ss_pred             eEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec
Q 005581          140 SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP  219 (690)
Q Consensus       140 ~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~  219 (690)
                      .|++|+++|+|++...  .++.+++.++.++|+++.+||+|++|+|+++++||++.+.++++++|+.|++++|||||+++
T Consensus         1 ~i~v~~~~g~i~~~~~--~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~   78 (211)
T cd07019           1 SIGVVFANGAIVDGEE--TQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAG   78 (211)
T ss_pred             CEEEEEEEEEEeCCCC--CCCccCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            4899999999998764  33567899999999999999999999999999999999999999999999999999999999


Q ss_pred             -CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEee-ccccccCCcccCCCCCHHHHHHHHHH
Q 005581          220 -VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRI-GKYKSAGDQLTRKTMSEENCEMLTAL  297 (690)
Q Consensus       220 -~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~-G~yKsa~ep~~~~~~S~e~re~~~~~  297 (690)
                       .|+++||+||++||+|||+|++.+|++|+..+.+|++++|+|+||+++++++ |.||..    .+++||++.|+.++.+
T Consensus        79 g~a~s~gy~la~~aD~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~----~~~~~s~e~r~~~~~~  154 (211)
T cd07019          79 GAAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVS----ITRALPPEAQLGLQLS  154 (211)
T ss_pred             CeehhHHHHHHHhCCEEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCC----CCCCCCHHHHHHHHHH
Confidence             5679999999999999999999999999999999999999999999999998 888842    3689999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHH
Q 005581          298 LDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISML  353 (690)
Q Consensus       298 ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l  353 (690)
                      ++++|++|++.|++.|++++++++++.++.+|++++|++.||||++++.|++++.+
T Consensus       155 ld~~~~~f~~~Va~~R~~~~~~l~~~~~~~~~~~~~A~~~GLvD~i~~~~~~~~~~  210 (211)
T cd07019         155 IENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKA  210 (211)
T ss_pred             HHHHHHHHHHHHHhhCCCCHHHHHHhcCCcEEeHHHHHHcCCcccCCCHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999988765

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=100.00  E-value=2.4e-38  Score=322.88  Aligned_cols=211  Identities=23%  Similarity=0.305  Sum_probs=194.5

Q ss_pred             EEEeecccccCCCCCC------CCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhc-CCCCE
Q 005581          392 VIRASGSISRVRSPLS------LSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLS-ESKPV  464 (690)
Q Consensus       392 vI~i~G~I~~~~~~~~------~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~-~~KPV  464 (690)
                      +|.++|.|....+...      ...+..+.+++++.|+++.+|++||+|||++|||||.+.+++.|+++|+.++ .+|||
T Consensus         2 ~i~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpV   81 (222)
T cd07018           2 VLDLSGSLVEQPPPSPPLLLGGGESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPV   81 (222)
T ss_pred             EEcCCCcccccCCCCChhhhccCCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeE
Confidence            5778888876554321      2334578899999999999999999999999999999999999999999886 59999


Q ss_pred             EEEECccccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccC--CCCChhHHH
Q 005581          465 IASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQ--RPFRPDEAE  542 (690)
Q Consensus       465 Va~v~g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~--~~~s~~~~~  542 (690)
                      ||++++ |+|||||||++||+|||+|++.+|+|||+...++++++++|+||+++.+++|+||++. +|+  +++|+++|+
T Consensus        82 ia~~~~-~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~-~~~~~~~~s~~~r~  159 (222)
T cd07018          82 IAYADG-YSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAV-EPFTRDDMSPEARE  159 (222)
T ss_pred             EEEeCC-CCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEecccccc-chhhcccCCHHHHH
Confidence            999997 9999999999999999999999999999999999999999999999999999999998 555  479999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHH
Q 005581          543 LFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAK  604 (690)
Q Consensus       543 ~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~  604 (690)
                      .+++.++++|++|++.|+++|+++.+.++.+++|++|+|++|++.||||++++.+++++.++
T Consensus       160 ~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~l~  221 (222)
T cd07018         160 QTQALLDSLWDQYLADVAASRGLSPDALEALIDLGGDSAEEALEAGLVDGLAYRDELEARLK  221 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHCCCCCcCCcHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999988764

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>PRK11778 putative inner membrane peptidase; Provisional

Probab=100.00  E-value=6.1e-38  Score=332.64  Aligned_cols=208  Identities=18%  Similarity=0.227  Sum_probs=185.8

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEE
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGY  217 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy  217 (690)
                      ++.|++|+++|+|.....      .++.+.+.++.+++.++  ++|+|++|||||.+..+..+...|.++|+++|||+++
T Consensus        89 ~~~v~VI~~~G~I~~~~~------~~l~e~i~a~l~~A~~~--~aVvLridSpGG~v~~s~~a~~~l~~lr~~~kpVva~  160 (330)
T PRK11778         89 KPRLFVLDFKGDIDASEV------ESLREEITAILAVAKPG--DEVLLRLESPGGVVHGYGLAASQLQRLRDAGIPLTVA  160 (330)
T ss_pred             CCeEEEEEEEEEECCCcc------hhhHHHHHHHHHhccCC--CeEEEEEeCCCCchhHHHHHHHHHHHHHhcCCCEEEE
Confidence            568999999999987543      34545555544444444  6999999999999999999999999999999999999


Q ss_pred             ec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHH
Q 005581          218 VP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTA  296 (690)
Q Consensus       218 ~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~  296 (690)
                      ++ .|+|+||||||+||+|||+|++.+|++||.++.++|+++|+|+||+++++++|+||++++||.  ++||++|+++++
T Consensus       161 v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~--~~see~Re~~q~  238 (330)
T PRK11778        161 VDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFG--ENTEEGREKFRE  238 (330)
T ss_pred             ECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCC--CCCHHHHHHHHH
Confidence            97 899999999999999999999999999999999999999999999999999999999999995  689999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581          297 LLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL  357 (690)
Q Consensus       297 ~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~  357 (690)
                      .++++|+.|++.|+++|+.  .+++++++|++|++++|+++||||+|++.||++..+.+..
T Consensus       239 ~Ld~~y~~F~~~Va~~R~~--l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~~~~~  297 (330)
T PRK11778        239 ELEETHQLFKDFVQRYRPQ--LDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELMKEH  297 (330)
T ss_pred             HHHHHHHHHHHHHHhcCCc--CCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHHHhcC
Confidence            9999999999999999962  3466788999999999999999999999999988776543

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=100.00  E-value=2.7e-37  Score=312.00  Aligned_cols=206  Identities=45%  Similarity=0.716  Sum_probs=195.1

Q ss_pred             cEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcC-CCCEEEE
Q 005581          389 QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSE-SKPVIAS  467 (690)
Q Consensus       389 ~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~-~KPVVa~  467 (690)
                      .|+||+++|+|.+.        +..+.+++.++|+++.+|++|++|+|++|||||++...+.+++.++.+++ +|||||+
T Consensus         1 ~v~vi~i~g~i~~~--------~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~   72 (208)
T cd07023           1 KIAVIDIEGTISDG--------GGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVAS   72 (208)
T ss_pred             CEEEEEEEEEEcCC--------CCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEE
Confidence            48999999999853        12568899999999999999999999999999999988999999988754 9999999


Q ss_pred             ECccccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHH
Q 005581          468 MSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKS  547 (690)
Q Consensus       468 v~g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~  547 (690)
                      ++|.|+||||+||++||+|||+|++.+||||+....++++++++|+||+++.++.|+||+.. .|++++|+++++.+++.
T Consensus        73 v~g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~-~~~~~~s~~~~e~~~~~  151 (208)
T cd07023          73 MGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKG-SPDRPLTEEERAILQAL  151 (208)
T ss_pred             ECCcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCC-CCCCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999 78999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHH
Q 005581          548 AQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIA  603 (690)
Q Consensus       548 i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a  603 (690)
                      ++.+|++|++.|+++|+++.++++++.+|.+|++++|++.||||+|++.++++++.
T Consensus       152 l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~a~~A~~~gLiD~i~~~~~~~~~~  207 (208)
T cd07023         152 VDDIYDQFVDVVAEGRGMSGERLDKLADGRVWTGRQALELGLVDELGGLDDAIAKA  207 (208)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHhcCCcEEEHHHHHHcCCCcccCCHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999988764

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=100.00  E-value=7.4e-37  Score=350.36  Aligned_cols=219  Identities=17%  Similarity=0.238  Sum_probs=206.9

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEE
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIG  216 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvA  216 (690)
                      .++.|++|+++|+|.+....  .+.++.+.+.+.|++|.+|++||+|||++|||||++.++++|+++|.++|+++|||||
T Consensus       306 ~~~~vavI~~~G~I~~~~~~--~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~ase~i~~~i~~~~~~gKPVva  383 (584)
T TIGR00705       306 VQDKIGIVHLEGPIADGRDT--EGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFASEIIRRELARAQARGKPVIV  383 (584)
T ss_pred             CCCeEEEEEEEEEEcCCCCc--ccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCcEEE
Confidence            57899999999999975432  2446788999999999999999999999999999999999999999999999999999


Q ss_pred             Eec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHH
Q 005581          217 YVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLT  295 (690)
Q Consensus       217 y~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~  295 (690)
                      +++ .|+|+||||||+||+|||+|++.+|++|+.+..++++++|+|+||+++.+++|+||.+ .++  +++|+++++.++
T Consensus       384 ~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~-s~~--~~~t~~~~~~~~  460 (584)
T TIGR00705       384 SMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANV-SLL--RPLTAEDQAIMQ  460 (584)
T ss_pred             EECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCC-CCC--CCCCHHHHHHHH
Confidence            997 7999999999999999999999999999999999999999999999999999999987 555  689999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHhCCC
Q 005581          296 ALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGVQ  360 (690)
Q Consensus       296 ~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~g~~  360 (690)
                      ..++++|++|++.|+++|+++.++++.+++|++|++++|+++||||++++.+++++.+++.++++
T Consensus       461 ~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig~~~~Ai~~a~~la~~~  525 (584)
T TIGR00705       461 LSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALGGLDEAVAKAAKLAHCR  525 (584)
T ss_pred             HHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCCCHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999884

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=100.00  E-value=8.1e-37  Score=309.31  Aligned_cols=208  Identities=35%  Similarity=0.530  Sum_probs=192.7

Q ss_pred             cEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhc-CCCCEEEE
Q 005581          389 QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLS-ESKPVIAS  467 (690)
Q Consensus       389 ~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~-~~KPVVa~  467 (690)
                      .||||+++|+|.++.+    ..+..+.+++.+.|+++.+|++||+|||+++||||++...+.+.+.++.++ .+|||||+
T Consensus         1 ~i~v~~~~g~i~~~~~----~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~   76 (211)
T cd07019           1 SIGVVFANGAIVDGEE----TQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVS   76 (211)
T ss_pred             CEEEEEEEEEEeCCCC----CCCccCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            4899999999997653    223466899999999999999999999999999999999888888887774 49999999


Q ss_pred             ECccccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeecc-cchhhhhhccCCCCChhHHHHHHH
Q 005581          468 MSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISR-GKYAEVLAAEQRPFRPDEAELFAK  546 (690)
Q Consensus       468 v~g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~-g~~~~~~~~~~~~~s~~~~~~~~~  546 (690)
                      ++|.|+||||+||++||+|||+|++.+||||++...++++++++|+|++++.++. |.++ .  .+.+++|+++++.++.
T Consensus        77 v~g~a~s~gy~la~~aD~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k-~--~~~~~~s~e~r~~~~~  153 (211)
T cd07019          77 AGGAAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLAD-V--SITRALPPEAQLGLQL  153 (211)
T ss_pred             ECCeehhHHHHHHHhCCEEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCccc-C--CCCCCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998 7766 3  3589999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHH
Q 005581          547 SAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIA  603 (690)
Q Consensus       547 ~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a  603 (690)
                      .++++|++|++.|+++|++++++++.+.+|++|+|+||++.||||+|++++++++.+
T Consensus       154 ~ld~~~~~f~~~Va~~R~~~~~~l~~~~~~~~~~~~~A~~~GLvD~i~~~~~~~~~~  210 (211)
T cd07019         154 SIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKA  210 (211)
T ss_pred             HHHHHHHHHHHHHHhhCCCCHHHHHHhcCCcEEeHHHHHHcCCcccCCCHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999988764

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=100.00  E-value=3.9e-36  Score=321.22  Aligned_cols=214  Identities=22%  Similarity=0.318  Sum_probs=203.8

Q ss_pred             eEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec
Q 005581          140 SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP  219 (690)
Q Consensus       140 ~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~  219 (690)
                      .|++|+++|.|........  .++.+++.+.|+++..||++++|+|++|||||.+.+++.|+++|+++++.+ ||+++++
T Consensus        60 ~Iavi~~~G~I~~~~~~~~--~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~-PV~v~v~  136 (317)
T COG0616          60 VIAVIHVEGAIVAGGGPLR--FIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKK-PVVVSVG  136 (317)
T ss_pred             EEEEEEeeeeeecCCCccc--cccHHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhcC-CEEEEEC
Confidence            7999999999997654221  578899999999999999999999999999999999999999999999876 9999998


Q ss_pred             -CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHH
Q 005581          220 -VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALL  298 (690)
Q Consensus       220 -~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~l  298 (690)
                       .|+||||||||+||+|||+|++.+|+|||.+..+.+.++++|+||+.+.+++|+||...++|  .++++++++.++..+
T Consensus       137 ~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~--~~~t~e~~~~~q~~~  214 (317)
T COG0616         137 GYAASGGYYIALAADKIVADPSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSPF--RPLTEEEREILQKEI  214 (317)
T ss_pred             CeecchhhhhhccCCEEEecCCceeeeceeEEecCCHHHHHHhcCCceeeeeccccccccCcc--cCCCHHHHHHHHHHH
Confidence             89999999999999999999999999999999999999999999999999999999999999  589999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHhC
Q 005581          299 DNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLG  358 (690)
Q Consensus       299 d~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~g  358 (690)
                      ++.|+.|++.|++.|++..+++..+.+|++|++++|++.||||++++.++++..+.+..+
T Consensus       215 ~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~~~~~~  274 (317)
T COG0616         215 DETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAELAG  274 (317)
T ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999888766

>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification

Probab=100.00  E-value=9.4e-35  Score=280.21  Aligned_cols=152  Identities=38%  Similarity=0.651  Sum_probs=135.0

Q ss_pred             HhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCC
Q 005581          207 FKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKT  285 (690)
Q Consensus       207 ~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~  285 (690)
                      ||+++||||||++ .++|++|||||+||+|||+|++.+|++|+.++.+||+++|+|+||+++++++|+||+++  +++++
T Consensus         2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~--~~~~~   79 (154)
T PF01343_consen    2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAG--FPRDP   79 (154)
T ss_dssp             HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCC--CTTSS
T ss_pred             ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCcccccc--CcCCC
Confidence            6789999999998 67889999999999999999999999999999999999999999999999999999999  56689


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHhCCC
Q 005581          286 MSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGVQ  360 (690)
Q Consensus       286 ~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~g~~  360 (690)
                      ||+++|++++++++++|++|++.|+++|+++.+++++++++++|++++|+++||||++++.||+++.+++.+++|
T Consensus        80 ~s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~~~~v~  154 (154)
T PF01343_consen   80 MSEEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAKLAGVK  154 (154)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHHCHSS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998874

; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.

>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification

Probab=99.97  E-value=6.1e-32  Score=260.65  Aligned_cols=151  Identities=33%  Similarity=0.516  Sum_probs=135.6

Q ss_pred             cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCCh
Q 005581          459 SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRP  538 (690)
Q Consensus       459 ~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~  538 (690)
                      +++|||||+++++|+||||||||+||.|||+|++.+|||||....++++++++|+||+++.++.|+||++. .+.+++||
T Consensus         4 ~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~-~~~~~~s~   82 (154)
T PF01343_consen    4 ASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAG-FPRDPMSE   82 (154)
T ss_dssp             HTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCC-CTTSS--H
T ss_pred             ccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCcccccc-CcCCCCCH
Confidence            56999999999999999999999999999999999999999999999999999999999999999999998 89999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHHHHcCCC
Q 005581          539 DEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKANIP  610 (690)
Q Consensus       539 ~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~~~a~l~  610 (690)
                      ++|+.+++.++.+|+.|++.|+++|+++.++++++++|++|+|++|+++||||++++.+++++.++++++++
T Consensus        83 ~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~~~~v~  154 (154)
T PF01343_consen   83 EERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAKLAGVK  154 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHHCHSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999998864

; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=99.96  E-value=2.7e-27  Score=267.96  Aligned_cols=428  Identities=15%  Similarity=0.110  Sum_probs=267.0

Q ss_pred             CCeEEEEEEceee----ccc--cccccCCCCCHHHHHHHHHHhh-cCCCceEEEEEcC-----CCCCCHHHHHH------
Q 005581          138 KGSVLTMKLRGQI----ADQ--LKSRFSSGLSLPQICENFVKAA-YDPRIVGIYLHIE-----PLSCGWGKVEE------  199 (690)
Q Consensus       138 ~~~VlvI~l~G~I----~~~--~~~~~~~~~s~~~i~~~L~~Aa-~D~~IkgVvL~i~-----s~Gg~~~~~~e------  199 (690)
                      ++.|++|+|+.+=    -+.  ...+..+...+.++.++|+++. .|+.|++|||+..     +.|+++.....      
T Consensus        18 ~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~   97 (546)
T TIGR03222        18 DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWK   97 (546)
T ss_pred             eCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccchh
Confidence            5679999998641    010  1112223345678999999998 7899999999864     23555543210      


Q ss_pred             --H--------HHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCC--CeEEEeccceeccchhhhhhh-cCce
Q 005581          200 --I--------RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPS--AYFSLYGLTVQASFLGGVLEK-VGIE  265 (690)
Q Consensus       200 --I--------~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~--~~vg~~Gv~~~~~~~k~lLeK-lGI~  265 (690)
                        +        +.....++..+|||||.++ .|..+|+.|+++||.+++.++  +.++...+            + +|+-
T Consensus        98 ~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv------------~~lGl~  165 (546)
T TIGR03222        98 VNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEV------------PLLGVL  165 (546)
T ss_pred             hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccch------------hccCcC
Confidence              0        1111234457899999999 567889999999999999986  68888766            4 5665


Q ss_pred             eEEEeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH-HhcCcccHHHHHhcCCeeEec
Q 005581          266 PQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERF-INDGVYKVERLKEEGFITNVL  344 (690)
Q Consensus       266 ~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~-~~~~v~~a~eAl~~GLID~i~  344 (690)
                      |.         .+...                          .....|.+......++ +.|+.++++||+++||||++.
T Consensus       166 P~---------~gg~~--------------------------~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv  210 (546)
T TIGR03222       166 PG---------TGGLT--------------------------RVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVV  210 (546)
T ss_pred             Cc---------cchhh--------------------------hccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEe
Confidence            51         11110                          0011123333434443 678999999999999999999


Q ss_pred             chhHHHHHHHH----HhCCCC-CCCCCcccccccccccccc------c-ccCCCCCcEEEEEeecccccCC-------CC
Q 005581          345 YDDEVISMLKE----RLGVQK-DKNLPMVDYRKYSGVRRWT------L-GLTGGGDQIAVIRASGSISRVR-------SP  405 (690)
Q Consensus       345 ~~de~~~~l~~----~~g~~~-~~~~~~v~~~~y~~~~~~~------~-~~~~~~~~IAvI~i~G~I~~~~-------~~  405 (690)
                      ..+++.+.+.+    .....+ ..+.+-|++....+.....      + -.....+.|++|++++|-..+.       ..
T Consensus       211 ~~~~l~~~a~~lA~~la~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~  290 (546)
T TIGR03222       211 KPSQFDAAIAERAAELAAQSDRPADAKGVQLTPLERTIDEDGVRYPTVDVAIDRAARTATITLKGPKAAQPADIAAIVAQ  290 (546)
T ss_pred             ChHHHHHHHHHHHHHHHhCCCCCcCCCceeeeehhhhcccCCcceeeEEEEEeccCCEEEEEecChhhcCcccccccccc
Confidence            88777655433    232221 1223334332222211100      0 0012247899999999854310       01


Q ss_pred             CCCCCcchHHHHHHHHHHHHH-hCCCceEEEEEcc-----CCCcchhh---------hhHH---HHHHHHh-cCCCCEEE
Q 005581          406 LSLSSSGIIGEQLIEKIRKVR-ESKRYKAAIIRID-----SPGGDALA---------SDLM---WREIRLL-SESKPVIA  466 (690)
Q Consensus       406 ~~~~~~~~~~~~l~~~l~~a~-~D~~VkaVVLrin-----SpGG~~~a---------s~~i---~~~I~~l-~~~KPVVa  466 (690)
                      ..|..+..+.++|.+++.+++ +|++||+|||+..     |.|+++..         .+.+   .+.+..+ ..+|||||
T Consensus       291 ~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviA  370 (546)
T TIGR03222       291 GANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFA  370 (546)
T ss_pred             ccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence            124566678899999999998 4599999999874     35565421         0111   1122333 34999999


Q ss_pred             EE-CccccHHH-HHHHHhcCeEEE-------ecCceec----cccccccccchHHHHHHc-CCceeeecccchhhhhhcc
Q 005581          467 SM-SDVAASGG-YYMAMAAGTILA-------ENLTLTG----SIGVVTGKFNLGKLYEKI-GFNKEIISRGKYAEVLAAE  532 (690)
Q Consensus       467 ~v-~g~AaSGG-y~iA~aaD~I~A-------~p~t~~G----SIGv~~~~~~~~~l~~kl-Gi~~~~i~~g~~~~~~~~~  532 (690)
                      .| +|.|.||| +.||++||++||       ++++.+|    .+|+++.......|...+ |.                 
T Consensus       371 av~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~~~L~~~v~G~-----------------  433 (546)
T TIGR03222       371 LIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNFGLYPMVNGLSRLATRFYAE-----------------  433 (546)
T ss_pred             EECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCccccccCCCcCcHHHHHHHhcCc-----------------
Confidence            99 89999999 999999999999       8999988    367777666665555444 43                 


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHH----HHHHHHHcC
Q 005581          533 QRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRA----VAIAKQKAN  608 (690)
Q Consensus       533 ~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~a----i~~a~~~a~  608 (690)
                                                   .|   ....+.+++|+.++++||+++|||+++.+.++.    .+.|.+++.
T Consensus       434 -----------------------------~~---a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~  481 (546)
T TIGR03222       434 -----------------------------PA---PVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERAS  481 (546)
T ss_pred             -----------------------------hh---HHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHHh
Confidence                                         11   001234688999999999999999999876554    445555555


Q ss_pred             CCCCCceEEEEecCCCCCHHHHHhcc-ccch----hcHHHH-HHHHHHhccCCc---chhhhcCccchHHHh
Q 005581          609 IPEDRQVTLVEMSKPSPTLPEILSSV-GNSI----AGVDRT-LKELLQDLTFSD---GVQARMDGILFQRLE  671 (690)
Q Consensus       609 l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~----~~~~~~-~~~~~~~~~~~~---g~qa~~~~~~~~~~~  671 (690)
                      .++..      +.    .....+... ..+.    .+.+.. ...++.+.+..+   |+.||+....++|-+
T Consensus       482 ~~p~a------~~----~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~p~f~~  543 (546)
T TIGR03222       482 FSPDA------LT----GLEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSGKKAQFDM  543 (546)
T ss_pred             cCHHH------HH----HHHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHccCCCCCCCc
Confidence            44310      00    011222211 1111    222222 244566777888   999999988877643

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>cd07014 S49_SppA Signal peptide peptidase A

Probab=99.96  E-value=2.9e-28  Score=240.25  Aligned_cols=172  Identities=18%  Similarity=0.229  Sum_probs=157.5

Q ss_pred             EEEEceeecccccc--ccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-
Q 005581          143 TMKLRGQIADQLKS--RFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-  219 (690)
Q Consensus       143 vI~l~G~I~~~~~~--~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~-  219 (690)
                      +|+++|+|+++...  .+.+.+++.++.++|+++.+||+|++|||+++++||++...+++++++++|++++|||||+++ 
T Consensus         1 ~i~~~g~i~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G   80 (177)
T cd07014           1 VVFANGVIVDGEESSSDTQGNVSGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGG   80 (177)
T ss_pred             CEEEEEEEeCCCCcCcCCCCCcCHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            48999999987642  344568999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHH
Q 005581          220 VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD  299 (690)
Q Consensus       220 ~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld  299 (690)
                      .|+++||+||++||+|||+|++.|+++|+...                                       +++.+.+++
T Consensus        81 ~a~g~g~~la~a~D~i~a~~~a~~~~~G~~~~---------------------------------------~~~~~~~l~  121 (177)
T cd07014          81 NAASGGYWISTPANYIVANPSTLVGSIGIFGV---------------------------------------QLADQLSIE  121 (177)
T ss_pred             chhHHHHHHHHhCCEEEECCCCeEEEechHhh---------------------------------------HHHHHHHHH
Confidence            78999999999999999999999999999332                                       678899999


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHH-hcCcccHHHHHhcCCeeEecchhHHHHHH
Q 005581          300 NIYGNWLDKVSSTKGKRKEDIERFI-NDGVYKVERLKEEGFITNVLYDDEVISML  353 (690)
Q Consensus       300 ~~~~~f~~~Va~~Rg~~~~~v~~~~-~~~v~~a~eAl~~GLID~i~~~de~~~~l  353 (690)
                      ++|++|++.|++.||++.+.+++++ ++.+|++++|++.||||++++.||+.+.|
T Consensus       122 ~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v~~~~e~~~~l  176 (177)
T cd07014         122 NGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLGSFDDAVAKL  176 (177)
T ss_pred             HHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccCCCHHHHHHHh
Confidence            9999999999999999999998877 56899999999999999999999987765

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=99.96  E-value=7e-27  Score=265.32  Aligned_cols=426  Identities=16%  Similarity=0.143  Sum_probs=266.4

Q ss_pred             CCeEEEEEEcee----eccc--cccccCCCCCHHHHHHHHHHhh-cCCCceEEEEEcCC-----CCCCHHHHH-------
Q 005581          138 KGSVLTMKLRGQ----IADQ--LKSRFSSGLSLPQICENFVKAA-YDPRIVGIYLHIEP-----LSCGWGKVE-------  198 (690)
Q Consensus       138 ~~~VlvI~l~G~----I~~~--~~~~~~~~~s~~~i~~~L~~Aa-~D~~IkgVvL~i~s-----~Gg~~~~~~-------  198 (690)
                      ++.|++|.|+.+    +.+.  ...+..+...+.++.++++++. +|+.|++|||+.+.     .|+++....       
T Consensus        22 ~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~  101 (550)
T PRK08184         22 DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWK  101 (550)
T ss_pred             eCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchh
Confidence            578999999853    1111  1222233445788999999998 78999999998753     345443211       


Q ss_pred             --------HHHH-HHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCC--CeEEEeccceeccchhhhhhh-cCce
Q 005581          199 --------EIRR-HVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPS--AYFSLYGLTVQASFLGGVLEK-VGIE  265 (690)
Q Consensus       199 --------eI~~-aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~--~~vg~~Gv~~~~~~~k~lLeK-lGI~  265 (690)
                              +... ....++..+|||||.++ .|..+|+.|+++||.+++.+.  +.++...+            + +|+-
T Consensus       102 ~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv------------~~~Gl~  169 (550)
T PRK08184        102 VNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEV------------PLLGVL  169 (550)
T ss_pred             hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccch------------hccccC
Confidence                    1111 12234457899999999 577899999999999999987  78888766            3 5555


Q ss_pred             eEEEeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH-HhcCcccHHHHHhcCCeeEec
Q 005581          266 PQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERF-INDGVYKVERLKEEGFITNVL  344 (690)
Q Consensus       266 ~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~-~~~~v~~a~eAl~~GLID~i~  344 (690)
                      |.         .+..                          ..+...|.+......++ +.|..++++||+++||||++.
T Consensus       170 P~---------~gg~--------------------------~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv  214 (550)
T PRK08184        170 PG---------TGGL--------------------------TRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVV  214 (550)
T ss_pred             CC---------cchH--------------------------HHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEee
Confidence            41         1110                          01111234445444554 578999999999999999999


Q ss_pred             chhHHHHHHHHH----hCCCC-CCCCCcccccccccc--------cccccccCCCCCcEEEEEeecccccCC-------C
Q 005581          345 YDDEVISMLKER----LGVQK-DKNLPMVDYRKYSGV--------RRWTLGLTGGGDQIAVIRASGSISRVR-------S  404 (690)
Q Consensus       345 ~~de~~~~l~~~----~g~~~-~~~~~~v~~~~y~~~--------~~~~~~~~~~~~~IAvI~i~G~I~~~~-------~  404 (690)
                      ..+++.+.+.+.    ....+ +.+.+-|.+....+.        ..+.... ...+.|++|+++.|-..+.       .
T Consensus       215 ~~d~l~~~a~~~A~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~va~itlnrP~~~Na~~~~~~~~  293 (550)
T PRK08184        215 KPSKFDAKVAERAAELAAASDRPADAKGVALTPLERTIDADGLRYRHVDVEI-DRAARTATITVKAPTAAQPADIAGIVA  293 (550)
T ss_pred             CHHHHHHHHHHHHHHHHhCCCCCCCCCccccccccccccCCceeeEEEEEEE-EccCCEEEEEEeCcccccccccccccc
Confidence            888776655433    22221 112222222211111        1111111 1246899999999865320       0


Q ss_pred             CCCCCCcchHHHHHHHHHHHHHh-CCCceEEEEEcc-----CCCcch--hh--h----hHHH----HHHHHh-cCCCCEE
Q 005581          405 PLSLSSSGIIGEQLIEKIRKVRE-SKRYKAAIIRID-----SPGGDA--LA--S----DLMW----REIRLL-SESKPVI  465 (690)
Q Consensus       405 ~~~~~~~~~~~~~l~~~l~~a~~-D~~VkaVVLrin-----SpGG~~--~a--s----~~i~----~~I~~l-~~~KPVV  465 (690)
                      ...|..+..+.++|.+++.++.. |++||+|||+..     |.|+++  ..  .    ....    +.++.+ ..+||||
T Consensus       294 ~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  373 (550)
T PRK08184        294 AGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLF  373 (550)
T ss_pred             cccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence            11245567788999999999986 799999999874     345552  11  0    0111    122333 2389999


Q ss_pred             EEEC-ccccHHH-HHHHHhcCeEEEe-------cCceec----cccccccccchHHHHHH-cCCceeeecccchhhhhhc
Q 005581          466 ASMS-DVAASGG-YYMAMAAGTILAE-------NLTLTG----SIGVVTGKFNLGKLYEK-IGFNKEIISRGKYAEVLAA  531 (690)
Q Consensus       466 a~v~-g~AaSGG-y~iA~aaD~I~A~-------p~t~~G----SIGv~~~~~~~~~l~~k-lGi~~~~i~~g~~~~~~~~  531 (690)
                      |.|+ |.|.||| +.|+++||++||+       +++.+|    .+|+++.......|... +|..               
T Consensus       374 AaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~L~r~~vG~~---------------  438 (550)
T PRK08184        374 ALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSALNFGLYPMVNGLSRLARRFYGEP---------------  438 (550)
T ss_pred             EEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccccccCCCCCCcHHHhHHHhcChH---------------
Confidence            9997 9999999 9999999999999       999988    47777776666555544 3431               


Q ss_pred             cCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHH----HHHHc
Q 005581          532 EQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAI----AKQKA  607 (690)
Q Consensus       532 ~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~----a~~~a  607 (690)
                                                     |   ..++..+++|+.++++||+++|||+++.+.++..+.    |.+++
T Consensus       439 -------------------------------~---A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia  484 (550)
T PRK08184        439 -------------------------------D---PLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERA  484 (550)
T ss_pred             -------------------------------H---HHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHH
Confidence                                           1   001112478999999999999999999887655444    45555


Q ss_pred             CCCCCCceEEEEecCCCCCHHHHHhcccc-ch----hcHHHH-HHHHHHhccCCc---chhhhcCccchHHH
Q 005581          608 NIPEDRQVTLVEMSKPSPTLPEILSSVGN-SI----AGVDRT-LKELLQDLTFSD---GVQARMDGILFQRL  670 (690)
Q Consensus       608 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~----~~~~~~-~~~~~~~~~~~~---g~qa~~~~~~~~~~  670 (690)
                      ..++.      .+.    .....+..... ..    ...+.. ...++++.+..+   |+.||+..-.++|-
T Consensus       485 ~~~p~------a~~----~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~~~f~  546 (550)
T PRK08184        485 SLSPD------ALT----GMEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTGQKAQFD  546 (550)
T ss_pred             hCCHH------HHH----HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhccCCCCCCC
Confidence            54431      011    11122221111 11    122222 345566777788   99999998877654

>cd07014 S49_SppA Signal peptide peptidase A

Probab=99.96  E-value=1e-27  Score=236.32  Aligned_cols=173  Identities=38%  Similarity=0.525  Sum_probs=152.2

Q ss_pred             EEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhc-CCCCEEEEECc
Q 005581          392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLS-ESKPVIASMSD  470 (690)
Q Consensus       392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~-~~KPVVa~v~g  470 (690)
                      +|.++|+|++.........+.++.+++.++|+++.+|++||+|||+++|+||++...+.+.+.++.++ .+|||||+++|
T Consensus         1 ~i~~~g~i~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G   80 (177)
T cd07014           1 VVFANGVIVDGEESSSDTQGNVSGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGG   80 (177)
T ss_pred             CEEEEEEEeCCCCcCcCCCCCcCHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            47899999976644433445678899999999999999999999999999999888888888887774 59999999999


Q ss_pred             cccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHHH
Q 005581          471 VAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQN  550 (690)
Q Consensus       471 ~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~  550 (690)
                      .|+||||+||++||+|||+|++.+|++|+...                                      ++..+..+++
T Consensus        81 ~a~g~g~~la~a~D~i~a~~~a~~~~~G~~~~--------------------------------------~~~~~~~l~~  122 (177)
T cd07014          81 NAASGGYWISTPANYIVANPSTLVGSIGIFGV--------------------------------------QLADQLSIEN  122 (177)
T ss_pred             chhHHHHHHHHhCCEEEECCCCeEEEechHhh--------------------------------------HHHHHHHHHH
Confidence            99999999999999999999999999886543                                      3456788999


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHh-cCCcccHHHHHHcCCcccccChHHHHHH
Q 005581          551 AYKLFRDKAAFSRSMTVDKMEEYA-QGRVWTGNDAASRGLVDALGGFSRAVAI  602 (690)
Q Consensus       551 ~y~~F~~~Va~~R~~~~~~v~~l~-~Grv~tg~eA~e~GLVD~ig~~~~ai~~  602 (690)
                      +|+.|++.|+++||++.+.+++++ .|++|+|+||++.||||++++.+++.+.
T Consensus       123 ~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v~~~~e~~~~  175 (177)
T cd07014         123 GYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLGSFDDAVAK  175 (177)
T ss_pred             HHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccCCCHHHHHHH
Confidence            999999999999999999988755 6999999999999999999999987765

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=99.95  E-value=1.1e-26  Score=225.07  Aligned_cols=160  Identities=33%  Similarity=0.398  Sum_probs=145.8

Q ss_pred             EEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECcc
Q 005581          392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV  471 (690)
Q Consensus       392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g~  471 (690)
                      ||+++|+|++           .+.+++++.|+++.+|+++++|+|++|||||++.+...|+++|+.+  +||||++++|.
T Consensus         1 vi~i~g~I~~-----------~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~~~--~kpvva~~~g~   67 (161)
T cd00394           1 VIFINGVIED-----------VSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQAS--RKPVIAYVGGQ   67 (161)
T ss_pred             CEEEEeEEcc-----------chHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHHHh--CCCEEEEECCh
Confidence            6899999995           4578999999999999999999999999999999999999999988  69999999999


Q ss_pred             ccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHHHH
Q 005581          472 AASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNA  551 (690)
Q Consensus       472 AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~  551 (690)
                      |+|+||+|+++||+||+.|++.+|++|+....+++.+                             +++++.+++.++.+
T Consensus        68 ~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~-----------------------------~~~~~~~~~~l~~~  118 (161)
T cd00394          68 AASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGN-----------------------------PTAQEADQRIILYF  118 (161)
T ss_pred             hHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCC-----------------------------hHHHHHHHHHHHHH
Confidence            9999999999999999999999999998766543321                             56788999999999


Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHh-cCCcccHHHHHHcCCcccc
Q 005581          552 YKLFRDKAAFSRSMTVDKMEEYA-QGRVWTGNDAASRGLVDAL  593 (690)
Q Consensus       552 y~~F~~~Va~~R~~~~~~v~~l~-~Grv~tg~eA~e~GLVD~i  593 (690)
                      |++|++.|+++|+++.+++++.. .|.+|+++||+++||||+|
T Consensus       119 ~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~eA~~~GLvD~i  161 (161)
T cd00394         119 IARFISLVAENRGQTTEKLEEDIEKDLVLTAQEALEYGLVDAL  161 (161)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHhcCCcEEcHHHHHHcCCcCcC
Confidence            99999999999999999887765 5999999999999999986

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=99.94  E-value=3.8e-26  Score=221.27  Aligned_cols=159  Identities=19%  Similarity=0.238  Sum_probs=146.7

Q ss_pred             EEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-Cc
Q 005581          143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC  221 (690)
Q Consensus       143 vI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~-~a  221 (690)
                      +|.|+|+|++         .++.++++.|+++..|+++++|+|++|++||++.+..+|+++|++++   ||||++++ .|
T Consensus         1 vi~i~g~I~~---------~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~~~~---kpvva~~~g~~   68 (161)
T cd00394           1 VIFINGVIED---------VSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQASR---KPVIAYVGGQA   68 (161)
T ss_pred             CEEEEeEEcc---------chHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHHHhC---CCEEEEECChh
Confidence            5789999997         46789999999999999999999999999999999999999999885   99999998 89


Q ss_pred             chhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHHHH
Q 005581          222 GEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNI  301 (690)
Q Consensus       222 as~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~  301 (690)
                      +|+||+|+++||+|||.|++.++++|+.....++++                              ++++++++.+++.+
T Consensus        69 ~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~------------------------------~~~~~~~~~~l~~~  118 (161)
T cd00394          69 ASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGN------------------------------PTAQEADQRIILYF  118 (161)
T ss_pred             HHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCC------------------------------hHHHHHHHHHHHHH
Confidence            999999999999999999999999999776665543                              77899999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHh-cCcccHHHHHhcCCeeEe
Q 005581          302 YGNWLDKVSSTKGKRKEDIERFIN-DGVYKVERLKEEGFITNV  343 (690)
Q Consensus       302 ~~~f~~~Va~~Rg~~~~~v~~~~~-~~v~~a~eAl~~GLID~i  343 (690)
                      |++|++.|+++|+++.+++++.+. +.+|+++||+++||||+|
T Consensus       119 ~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~eA~~~GLvD~i  161 (161)
T cd00394         119 IARFISLVAENRGQTTEKLEEDIEKDLVLTAQEALEYGLVDAL  161 (161)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHhcCCcEEcHHHHHHcCCcCcC
Confidence            999999999999999999988775 578999999999999985

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.93  E-value=8e-25  Score=217.72  Aligned_cols=167  Identities=22%  Similarity=0.211  Sum_probs=135.6

Q ss_pred             EEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEEC
Q 005581          390 IAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMS  469 (690)
Q Consensus       390 IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~  469 (690)
                      |+||+++|.|.++           ..+.+.+.|+.+.+|+ +++|+|+||||||++.++..|++.|...  +|||||+|+
T Consensus         1 ~~vv~i~g~I~~~-----------~~~~l~~~l~~a~~~~-~~~vvl~InSpGG~v~~~~~i~~~l~~~--~kPvia~v~   66 (187)
T cd07020           1 VYVLEINGAITPA-----------TADYLERAIDQAEEGG-ADALIIELDTPGGLLDSTREIVQAILAS--PVPVVVYVY   66 (187)
T ss_pred             CEEEEEeeEEChH-----------HHHHHHHHHHHHHhCC-CCEEEEEEECCCCCHHHHHHHHHHHHhC--CCCEEEEEe
Confidence            5899999999842           3578899999998665 9999999999999999999999999765  999999998


Q ss_pred             ---ccccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHH
Q 005581          470 ---DVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAK  546 (690)
Q Consensus       470 ---g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~  546 (690)
                         |.|+|||++|+++||+|+|+|++.+|++++....+...                               .+.. .++
T Consensus        67 ~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~-------------------------------~~~~-~~~  114 (187)
T cd07020          67 PSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGG-------------------------------SDPV-MEK  114 (187)
T ss_pred             cCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCc-------------------------------chHH-HHH
Confidence               99999999999999999999999999988764432110                               1111 222


Q ss_pred             HHHHHHHHHHHHHHhhcCCCHHHHHH-HhcCCcccHHHHHHcCCcccccChH-HHHHH
Q 005581          547 SAQNAYKLFRDKAAFSRSMTVDKMEE-YAQGRVWTGNDAASRGLVDALGGFS-RAVAI  602 (690)
Q Consensus       547 ~i~~~y~~F~~~Va~~R~~~~~~v~~-l~~Grv~tg~eA~e~GLVD~ig~~~-~ai~~  602 (690)
                      .+...+..|...+++.||.+.+.+++ +++|++|+|+||+++||||++++.+ ++++.
T Consensus       115 ~~~~~~~~~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~~  172 (187)
T cd07020         115 KILNDAVAYIRSLAELRGRNAEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLKK  172 (187)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHHH
Confidence            33333445788899999998777765 6789999999999999999998776 45533

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.88  E-value=5.8e-22  Score=192.83  Aligned_cols=158  Identities=16%  Similarity=0.220  Sum_probs=135.5

Q ss_pred             EEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECcc
Q 005581          392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV  471 (690)
Q Consensus       392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g~  471 (690)
                      +|.+.|+|.+           .+.+.+++.|..+..++.++.|+|+||||||++.++..|++.|+.+  ++||++.+.|.
T Consensus         2 ~i~i~g~I~~-----------~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~~i~~~i~~~--~~~v~~~~~g~   68 (162)
T cd07013           2 EIMLTGEVED-----------ISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFI--KADVVTIIDGL   68 (162)
T ss_pred             EEEEccEECc-----------HHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHHHHHHHHHHhc--CCCceEEEEee
Confidence            6889999973           5678999999999999999999999999999999999999999988  78999999999


Q ss_pred             ccHHHHHHHHhcC--eEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHH
Q 005581          472 AASGGYYMAMAAG--TILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQ  549 (690)
Q Consensus       472 AaSGGy~iA~aaD--~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~  549 (690)
                      |+|+|++|+++||  .+++.|++.++......                             ....  ...+.+..++.++
T Consensus        69 aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~-----------------------------~~~g--~~~d~~~~~~~l~  117 (162)
T cd07013          69 AASMGSVIAMAGAKGKRFILPNAMMMIHQPWG-----------------------------GTLG--DATDMRIYADLLL  117 (162)
T ss_pred             hhhHHHHHHHcCCCCcEEEecCEEEEEccCcc-----------------------------cccC--CHHHHHHHHHHHH
Confidence            9999999999999  69999988765321000                             0001  2455678889999


Q ss_pred             HHHHHHHHHHHhhcCCCHHHHHHHhcCCc-ccHHHHHHcCCcccc
Q 005581          550 NAYKLFRDKAAFSRSMTVDKMEEYAQGRV-WTGNDAASRGLVDAL  593 (690)
Q Consensus       550 ~~y~~F~~~Va~~R~~~~~~v~~l~~Grv-~tg~eA~e~GLVD~i  593 (690)
                      +.++.|.+.++++||++.++++++++... ++|+||+++||||+|
T Consensus       118 ~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~eA~~~GliD~i  162 (162)
T cd07013         118 KVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREAVEYGFADTI  162 (162)
T ss_pred             HHHHHHHHHHHHHhCcCHHHHHHHHcCCccccHHHHHHcCCCCcC
Confidence            99999999999999999999999777555 599999999999986

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.87  E-value=2e-21  Score=189.92  Aligned_cols=165  Identities=22%  Similarity=0.258  Sum_probs=132.3

Q ss_pred             EEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEEC
Q 005581          390 IAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMS  469 (690)
Q Consensus       390 IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~  469 (690)
                      |.||+++|+|.+           .+.+.+.+.|+++.+| ++++|+|++|||||.+.++..|++.|+..  ++||++++.
T Consensus         1 v~vi~i~G~I~~-----------~~~~~l~~~l~~A~~~-~~~~i~l~inSPGG~v~~~~~I~~~i~~~--~~pvv~~v~   66 (172)
T cd07015           1 VYVAQIKGQITS-----------YTYDQFDRYITIAEQD-NAEAIIIELDTPGGRADAAGNIVQRIQQS--KIPVIIYVY   66 (172)
T ss_pred             CEEEEEeeEECH-----------hHHHHHHHHHHHHhcC-CCCeEEEEEECCCCCHHHHHHHHHHHHhc--CcCEEEEEe
Confidence            578999999985           3467788889988765 68999999999999999999999999865  899999998


Q ss_pred             ---ccccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHH
Q 005581          470 ---DVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAK  546 (690)
Q Consensus       470 ---g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~  546 (690)
                         |.|+|+||+|+++||+|+|.|+|.+|++|++.+...-       |                    ..     +....
T Consensus        67 p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~-------~--------------------~~-----~~~~~  114 (172)
T cd07015          67 PPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQN-------G--------------------SI-----IEAPP  114 (172)
T ss_pred             cCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCC-------C--------------------cc-----ccchH
Confidence               9999999999999999999999999999986432110       0                    00     00122


Q ss_pred             HHHHHHHHHHHHHHhhcCCCHHHHHHHhc-CCcccHHHHHHcCCcccccC-hHHHH
Q 005581          547 SAQNAYKLFRDKAAFSRSMTVDKMEEYAQ-GRVWTGNDAASRGLVDALGG-FSRAV  600 (690)
Q Consensus       547 ~i~~~y~~F~~~Va~~R~~~~~~v~~l~~-Grv~tg~eA~e~GLVD~ig~-~~~ai  600 (690)
                      .+..-+..+++.+++.||.+.+.++...+ ...+|++||+++|+||.+.. .+|++
T Consensus       115 ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~~~~ll  170 (172)
T cd07015         115 KITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINELL  170 (172)
T ss_pred             HHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhcCcCHHHHHHcCCceeeeCCHHHHh
Confidence            33334445555589999999999988655 99999999999999999865 45544

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.87  E-value=2.3e-21  Score=191.09  Aligned_cols=161  Identities=22%  Similarity=0.264  Sum_probs=136.8

Q ss_pred             EEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEEC
Q 005581          390 IAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMS  469 (690)
Q Consensus       390 IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~  469 (690)
                      |.||+++|+|.+           ...+.+.+.|+++.+++ +++|+|++|||||.+.+++.|++.|+..  ++|||++++
T Consensus         1 v~vi~i~g~I~~-----------~~~~~l~~~l~~a~~~~-~~~ivl~inspGG~v~~~~~I~~~l~~~--~~pvva~V~   66 (178)
T cd07021           1 VYVIPIEGEIDP-----------GLAAFVERALKEAKEEG-ADAVVLDIDTPGGRVDSALEIVDLILNS--PIPTIAYVN   66 (178)
T ss_pred             CEEEEEeeEECH-----------HHHHHHHHHHHHHHhCC-CCeEEEEEECcCCCHHHHHHHHHHHHhC--CCCEEEEEC
Confidence            579999999985           24678889999999887 9999999999999999999999999876  899999999


Q ss_pred             ccccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHH
Q 005581          470 DVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQ  549 (690)
Q Consensus       470 g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~  549 (690)
                      |.|+|+|++|+++||+|+|.|++.+|++|+++..++-                                    ...+.+.
T Consensus        67 g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v~~~~~~------------------------------------~~~~K~~  110 (178)
T cd07021          67 DRAASAGALIALAADEIYMAPGATIGAAEPIPGDGNG------------------------------------AADEKVQ  110 (178)
T ss_pred             CchHHHHHHHHHhCCeEEECCCCeEecCeeEcCCCcc------------------------------------chhHHHH
Confidence            9999999999999999999999999999987654320                                    0112344


Q ss_pred             HHHHHHHHHHHhhcCCCHHHHHHHhcCC--------------cccHHHHHHcCCcccccC-hHHHH
Q 005581          550 NAYKLFRDKAAFSRSMTVDKMEEYAQGR--------------VWTGNDAASRGLVDALGG-FSRAV  600 (690)
Q Consensus       550 ~~y~~F~~~Va~~R~~~~~~v~~l~~Gr--------------v~tg~eA~e~GLVD~ig~-~~~ai  600 (690)
                      +.+..+.+..++.||.+.+.++.+.+-.              .+|++||+++|++|.+.. .++++
T Consensus       111 ~~~~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~~~~ll  176 (178)
T cd07021         111 SYWRAKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDELL  176 (178)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECCHHHHh
Confidence            5566777778999999999999988855              689999999999999854 55554

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.86  E-value=4.1e-21  Score=186.22  Aligned_cols=158  Identities=18%  Similarity=0.243  Sum_probs=134.2

Q ss_pred             EEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECcc
Q 005581          392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV  471 (690)
Q Consensus       392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g~  471 (690)
                      .|++.|+|..+.        +.+.+.+.+.|+.+.++   +.|+|.||||||++.++..|++.|+.+  +|||++.+.|.
T Consensus         2 ~i~~~g~I~~~~--------~~~~~~~~~~l~~~~~~---~~i~l~inspGG~~~~~~~i~~~i~~~--~~pvi~~v~g~   68 (160)
T cd07016           2 EIYIYGDIGSDW--------GVTAKEFKDALDALGDD---SDITVRINSPGGDVFAGLAIYNALKRH--KGKVTVKIDGL   68 (160)
T ss_pred             EEEEEeEeCCCc--------ccCHHHHHHHHHhccCC---CCEEEEEECCCCCHHHHHHHHHHHHhc--CCCEEEEEcch
Confidence            588999998521        24578999999988776   789999999999999999999999887  89999999999


Q ss_pred             ccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHHHH
Q 005581          472 AASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNA  551 (690)
Q Consensus       472 AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~  551 (690)
                      |+|+|++|+++||+++|+|++.++........                               +-...+.+..++.+++.
T Consensus        69 a~s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~-------------------------------~g~~~~~~~~~~~l~~~  117 (160)
T cd07016          69 AASAASVIAMAGDEVEMPPNAMLMIHNPSTGA-------------------------------AGNADDLRKAADLLDKI  117 (160)
T ss_pred             HHhHHHHHHhcCCeEEECCCcEEEEECCcccc-------------------------------CcCHHHHHHHHHHHHHH
Confidence            99999999999999999999987643321110                               01134566788899999


Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHhc-CCcccHHHHHHcCCcccc
Q 005581          552 YKLFRDKAAFSRSMTVDKMEEYAQ-GRVWTGNDAASRGLVDAL  593 (690)
Q Consensus       552 y~~F~~~Va~~R~~~~~~v~~l~~-Grv~tg~eA~e~GLVD~i  593 (690)
                      +++|.+.+++.+|++.++++.++. +++++++||+++||||++
T Consensus       118 ~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~~GliD~v  160 (160)
T cd07016         118 DESIANAYAEKTGLSEEEISALMDAETWLTAQEAVELGFADEI  160 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHHHHcCCCCcC
Confidence            999999999999999999999888 557899999999999986

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.84  E-value=7.9e-20  Score=181.93  Aligned_cols=165  Identities=13%  Similarity=0.138  Sum_probs=131.9

Q ss_pred             EEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-
Q 005581          141 VLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-  219 (690)
Q Consensus       141 VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~-  219 (690)
                      |++|+|+|.|.+.         ....+.+.|+.+.+|+ +++|+|+||||||.+.++++|.+.|..   .+||||++++ 
T Consensus         1 ~~vv~i~g~I~~~---------~~~~l~~~l~~a~~~~-~~~vvl~InSpGG~v~~~~~i~~~l~~---~~kPvia~v~~   67 (187)
T cd07020           1 VYVLEINGAITPA---------TADYLERAIDQAEEGG-ADALIIELDTPGGLLDSTREIVQAILA---SPVPVVVYVYP   67 (187)
T ss_pred             CEEEEEeeEEChH---------HHHHHHHHHHHHHhCC-CCEEEEEEECCCCCHHHHHHHHHHHHh---CCCCEEEEEec
Confidence            4789999999864         2467999999998664 999999999999999999999988874   5799999995 


Q ss_pred             ---CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHH
Q 005581          220 ---VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTA  296 (690)
Q Consensus       220 ---~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~  296 (690)
                         .|+|+||+|+++||+|+|.|++.+|++++.....                          +    ..  ........
T Consensus        68 ~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~--------------------------~----~~--~~~~~~~~  115 (187)
T cd07020          68 SGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGG--------------------------G----GG--SDPVMEKK  115 (187)
T ss_pred             CCCCchhHHHHHHHhCCceeECCCCcEEeccccccCC--------------------------C----Cc--chHHHHHH
Confidence               6889999999999999999999999998731110                          0    00  12233345


Q ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHH-HhcCcccHHHHHhcCCeeEecchh-HHHH
Q 005581          297 LLDNIYGNWLDKVSSTKGKRKEDIERF-INDGVYKVERLKEEGFITNVLYDD-EVIS  351 (690)
Q Consensus       297 ~ld~~~~~f~~~Va~~Rg~~~~~v~~~-~~~~v~~a~eAl~~GLID~i~~~d-e~~~  351 (690)
                      +++.++ .|...+++.||.+.+.++++ ..++.|+++||+++||||++...+ +++.
T Consensus       116 ~~~~~~-~~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~  171 (187)
T cd07020         116 ILNDAV-AYIRSLAELRGRNAEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLK  171 (187)
T ss_pred             HHHHHH-HHHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHH
Confidence            555555 47889999999998888774 578999999999999999998765 5543

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.82  E-value=3e-19  Score=176.16  Aligned_cols=160  Identities=15%  Similarity=0.205  Sum_probs=133.4

Q ss_pred             EEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-
Q 005581          141 VLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-  219 (690)
Q Consensus       141 VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~-  219 (690)
                      |.+|+++|+|.+.         ..+.+.+.|++|.+++ +++|+|++|||||.+..+++|.+.|.++   .|||++|++ 
T Consensus         1 v~vi~i~g~I~~~---------~~~~l~~~l~~a~~~~-~~~ivl~inspGG~v~~~~~I~~~l~~~---~~pvva~V~g   67 (178)
T cd07021           1 VYVIPIEGEIDPG---------LAAFVERALKEAKEEG-ADAVVLDIDTPGGRVDSALEIVDLILNS---PIPTIAYVND   67 (178)
T ss_pred             CEEEEEeeEECHH---------HHHHHHHHHHHHHhCC-CCeEEEEEECcCCCHHHHHHHHHHHHhC---CCCEEEEECC
Confidence            5789999999863         2456888999999886 9999999999999999999999999854   699999998 


Q ss_pred             CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHH
Q 005581          220 VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD  299 (690)
Q Consensus       220 ~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld  299 (690)
                      .|+|+||+|+++||+|+|.|++.+|++|+....                   |      .     +       .+...+.
T Consensus        68 ~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v~~~-------------------~------~-----~-------~~~~K~~  110 (178)
T cd07021          68 RAASAGALIALAADEIYMAPGATIGAAEPIPGD-------------------G------N-----G-------AADEKVQ  110 (178)
T ss_pred             chHHHHHHHHHhCCeEEECCCCeEecCeeEcCC-------------------C------c-----c-------chhHHHH
Confidence            789999999999999999999999999883211                   0      0     0       1123455


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHhcC--------------cccHHHHHhcCCeeEec-chhHHH
Q 005581          300 NIYGNWLDKVSSTKGKRKEDIERFINDG--------------VYKVERLKEEGFITNVL-YDDEVI  350 (690)
Q Consensus       300 ~~~~~f~~~Va~~Rg~~~~~v~~~~~~~--------------v~~a~eAl~~GLID~i~-~~de~~  350 (690)
                      +.+..+++.+++.||.+.+.++.+++..              .++++||++.|++|.+. +.+|++
T Consensus       111 ~~~~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~~~~ll  176 (178)
T cd07021         111 SYWRAKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDELL  176 (178)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECCHHHHh
Confidence            5677788889999999999999999876              58999999999999995 455554

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.81  E-value=6.3e-19  Score=172.38  Aligned_cols=164  Identities=16%  Similarity=0.186  Sum_probs=129.1

Q ss_pred             EEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-
Q 005581          141 VLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-  219 (690)
Q Consensus       141 VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~-  219 (690)
                      |.+|+++|+|.+.         +.+.+.+.|++|.+| ++++|+|++|||||.+..+.+|.+.|+.   +++||++|+. 
T Consensus         1 v~vi~i~G~I~~~---------~~~~l~~~l~~A~~~-~~~~i~l~inSPGG~v~~~~~I~~~i~~---~~~pvv~~v~p   67 (172)
T cd07015           1 VYVAQIKGQITSY---------TYDQFDRYITIAEQD-NAEAIIIELDTPGGRADAAGNIVQRIQQ---SKIPVIIYVYP   67 (172)
T ss_pred             CEEEEEeeEECHh---------HHHHHHHHHHHHhcC-CCCeEEEEEECCCCCHHHHHHHHHHHHh---cCcCEEEEEec
Confidence            5789999999863         345788889998765 6999999999999999999999999974   5799999994 


Q ss_pred             ---CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHH
Q 005581          220 ---VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTA  296 (690)
Q Consensus       220 ---~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~  296 (690)
                         .++|+||||+++||+|+|.|++.+|++|+...  +                 |      +    ++..    +.+..
T Consensus        68 ~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~--~-----------------g------~----~~~~----~~~~~  114 (172)
T cd07015          68 PGASAASAGTYIALGSHLIAMAPGTSIGACRPILG--Y-----------------S------Q----NGSI----IEAPP  114 (172)
T ss_pred             CCCeehhHHHHHHHhcCceEECCCCEEEEcccccc--C-----------------C------C----CCcc----ccchH
Confidence               68999999999999999999999999998421  0                 0      0    0000    11122


Q ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHhc-CcccHHHHHhcCCeeEec-chhHHH
Q 005581          297 LLDNIYGNWLDKVSSTKGKRKEDIERFIND-GVYKVERLKEEGFITNVL-YDDEVI  350 (690)
Q Consensus       297 ~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~-~v~~a~eAl~~GLID~i~-~~de~~  350 (690)
                      .+.+-+-.+++.+++.||.+.+.+++.++. ..++++||+++|+||.+. +.+|++
T Consensus       115 ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~~~~ll  170 (172)
T cd07015         115 KITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINELL  170 (172)
T ss_pred             HHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhcCcCHHHHHHcCCceeeeCCHHHHh
Confidence            233344556667999999999999998876 577999999999999995 445543

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.80  E-value=1.3e-18  Score=169.24  Aligned_cols=157  Identities=15%  Similarity=0.167  Sum_probs=134.5

Q ss_pred             EEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-Cc
Q 005581          143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC  221 (690)
Q Consensus       143 vI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~-~a  221 (690)
                      +|.|.|+|.+         .+..++++.|..+..++.++.|+|.||||||++..+.+|+++|+.+   ++||++++. .|
T Consensus         2 ~i~i~g~I~~---------~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~~i~~~i~~~---~~~v~~~~~g~a   69 (162)
T cd07013           2 EIMLTGEVED---------ISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFI---KADVVTIIDGLA   69 (162)
T ss_pred             EEEEccEECc---------HHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHHHHHHHHHHhc---CCCceEEEEeeh
Confidence            5788899976         3467899999999999999999999999999999999999999976   468999887 79


Q ss_pred             chhhhHHhhccC--eeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHH
Q 005581          222 GEKEYYLACACE--ELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD  299 (690)
Q Consensus       222 as~gY~LAsaaD--~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld  299 (690)
                      +|+||+|+++||  +.++.|.+.++.+....                            ..    .-+..+.+...+.++
T Consensus        70 aS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~----------------------------~~----~g~~~d~~~~~~~l~  117 (162)
T cd07013          70 ASMGSVIAMAGAKGKRFILPNAMMMIHQPWG----------------------------GT----LGDATDMRIYADLLL  117 (162)
T ss_pred             hhHHHHHHHcCCCCcEEEecCEEEEEccCcc----------------------------cc----cCCHHHHHHHHHHHH
Confidence            999999999999  58888899988764310                            11    112445677889999


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHhcCcc-cHHHHHhcCCeeEe
Q 005581          300 NIYGNWLDKVSSTKGKRKEDIERFINDGVY-KVERLKEEGFITNV  343 (690)
Q Consensus       300 ~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~-~a~eAl~~GLID~i  343 (690)
                      .+++.|.+.+++.||++.++++++++...| +++||+++||||+|
T Consensus       118 ~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~eA~~~GliD~i  162 (162)
T cd07013         118 KVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREAVEYGFADTI  162 (162)
T ss_pred             HHHHHHHHHHHHHhCcCHHHHHHHHcCCccccHHHHHHcCCCCcC
Confidence            999999999999999999999999888666 99999999999985

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.78  E-value=5.7e-18  Score=164.27  Aligned_cols=157  Identities=15%  Similarity=0.200  Sum_probs=134.6

Q ss_pred             EEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-Cc
Q 005581          143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC  221 (690)
Q Consensus       143 vI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~-~a  221 (690)
                      .|.|.|+|.+..      +.+..++.+.|+.+..+   +.|+|.||||||++.++.+|.+.|+.+   +|||++++. .|
T Consensus         2 ~i~~~g~I~~~~------~~~~~~~~~~l~~~~~~---~~i~l~inspGG~~~~~~~i~~~i~~~---~~pvi~~v~g~a   69 (160)
T cd07016           2 EIYIYGDIGSDW------GVTAKEFKDALDALGDD---SDITVRINSPGGDVFAGLAIYNALKRH---KGKVTVKIDGLA   69 (160)
T ss_pred             EEEEEeEeCCCc------ccCHHHHHHHHHhccCC---CCEEEEEECCCCCHHHHHHHHHHHHhc---CCCEEEEEcchH
Confidence            578999998742      24678999999999776   789999999999999999999998855   699999998 68


Q ss_pred             chhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHHHH
Q 005581          222 GEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNI  301 (690)
Q Consensus       222 as~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~  301 (690)
                      +|+|++|+++||+++|.|++.++.+.+..            +.                    .....+.+...+.++.+
T Consensus        70 ~s~g~~ia~a~d~~~~~~~a~~~~~~~~~------------~~--------------------~g~~~~~~~~~~~l~~~  117 (160)
T cd07016          70 ASAASVIAMAGDEVEMPPNAMLMIHNPST------------GA--------------------AGNADDLRKAADLLDKI  117 (160)
T ss_pred             HhHHHHHHhcCCeEEECCCcEEEEECCcc------------cc--------------------CcCHHHHHHHHHHHHHH
Confidence            99999999999999999999999876521            00                    11244567788899999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHhcC-cccHHHHHhcCCeeEe
Q 005581          302 YGNWLDKVSSTKGKRKEDIERFINDG-VYKVERLKEEGFITNV  343 (690)
Q Consensus       302 ~~~f~~~Va~~Rg~~~~~v~~~~~~~-v~~a~eAl~~GLID~i  343 (690)
                      ++.|.+.+++.+|++.+.+++++.+. .++++||+++||||++
T Consensus       118 ~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~~GliD~v  160 (160)
T cd07016         118 DESIANAYAEKTGLSEEEISALMDAETWLTAQEAVELGFADEI  160 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHHHHcCCCCcC
Confidence            99999999999999999999999976 6799999999999985

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.78  E-value=3.9e-18  Score=167.43  Aligned_cols=158  Identities=20%  Similarity=0.271  Sum_probs=134.1

Q ss_pred             EEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECcc
Q 005581          392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV  471 (690)
Q Consensus       392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g~  471 (690)
                      +|++.|+|++           ...+.++..|..+..++..+.|+|+||||||++.++..|++.|+..  +.||++.+.|.
T Consensus        11 ~i~i~g~I~~-----------~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~~~i~~~l~~~--~~~v~t~~~g~   77 (171)
T cd07017          11 IIFLGGPIDD-----------EVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGLAIYDTMQYI--KPPVSTICLGL   77 (171)
T ss_pred             EEEEcCEEcH-----------HHHHHHHHHHHHHHccCCCCceEEEEECCCCCHHHHHHHHHHHHhc--CCCEEEEEEeE
Confidence            8899999984           3568899999999999889999999999999999999999999977  89999999999


Q ss_pred             ccHHHHHHHHhcC--eEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHH
Q 005581          472 AASGGYYMAMAAG--TILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQ  549 (690)
Q Consensus       472 AaSGGy~iA~aaD--~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~  549 (690)
                      |+|+|++|+++||  .+++.|++.++........                  .|             +.++.....+.++
T Consensus        78 aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~------------------~g-------------~~~~~~~~~~~l~  126 (171)
T cd07017          78 AASMGALLLAAGTKGKRYALPNSRIMIHQPLGGA------------------GG-------------QASDIEIQAKEIL  126 (171)
T ss_pred             ehhHHHHHHHcCCCCCEEEccchHHHHcCCCccC------------------CC-------------CHHHHHHHHHHHH
Confidence            9999999999999  7999999987643311100                  01             1234455566778


Q ss_pred             HHHHHHHHHHHhhcCCCHHHHHHHh-cCCcccHHHHHHcCCcccc
Q 005581          550 NAYKLFRDKAAFSRSMTVDKMEEYA-QGRVWTGNDAASRGLVDAL  593 (690)
Q Consensus       550 ~~y~~F~~~Va~~R~~~~~~v~~l~-~Grv~tg~eA~e~GLVD~i  593 (690)
                      ...+.|.+.+++.+|++.+++..++ .++.++++||+++||||+|
T Consensus       127 ~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~lta~EA~e~GiiD~V  171 (171)
T cd07017         127 RLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSAEEAKEYGLIDKI  171 (171)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHHHHHcCCCccC
Confidence            8889999999999999999999887 5889999999999999986

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=99.77  E-value=9.5e-19  Score=178.26  Aligned_cols=164  Identities=21%  Similarity=0.243  Sum_probs=131.3

Q ss_pred             CCCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh-------------
Q 005581          386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS-------------  448 (690)
Q Consensus       386 ~~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as-------------  448 (690)
                      .+++|++|.+|.|-..      |+.+..+..+|.+++.++.+|+.+++|||++.    +.|.+....             
T Consensus        43 ~d~~I~lItlNRP~~~------Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~  116 (290)
T KOG1680|consen   43 EDNGIALITLNRPKAL------NALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIF  116 (290)
T ss_pred             cCCCeEEEEeCChHHh------ccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccccc
Confidence            3589999999999774      55667788999999999999999999999974    345444221             


Q ss_pred             hHHHHHHHHhcCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccc
Q 005581          449 DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGK  524 (690)
Q Consensus       449 ~~i~~~I~~l~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~  524 (690)
                      ...|+.+.++  +||||+.++|+|.+||..|++.||++||++++++|-    +|+++.+.+...+..-+|          
T Consensus       117 ~~~~~~~~~~--~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG----------  184 (290)
T KOG1680|consen  117 LRVWDLVSRL--KKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVG----------  184 (290)
T ss_pred             cchhhhhhhc--ccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhC----------
Confidence            1234445434  899999999999999999999999999999999994    788888877766643333          


Q ss_pred             hhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHH
Q 005581          525 YAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAK  604 (690)
Q Consensus       525 ~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~  604 (690)
                                                          .+|     +++.+++|+.++++||+++|||++|...++++.+|.
T Consensus       185 ------------------------------------~s~-----Ale~~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv  223 (290)
T KOG1680|consen  185 ------------------------------------KSR-----ALEMILTGRRLGAQEAKKIGLVNKVVPSGDALGEAV  223 (290)
T ss_pred             ------------------------------------hHH-----HHHHHHhcCcccHHHHHhCCceeEeecchhHHHHHH
Confidence                                                233     667789999999999999999999999888776666


Q ss_pred             HHcC
Q 005581          605 QKAN  608 (690)
Q Consensus       605 ~~a~  608 (690)
                      +++.
T Consensus       224 ~l~~  227 (290)
T KOG1680|consen  224 KLAE  227 (290)
T ss_pred             HHHH
Confidence            6654

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=99.76  E-value=3.6e-18  Score=178.40  Aligned_cols=218  Identities=17%  Similarity=0.174  Sum_probs=139.8

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-----CCCcchhh--h------h----
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALA--S------D----  449 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-----SpGG~~~a--s------~----  449 (690)
                      .+.|++|+++.+-..      |..+..+.++|.+.++++..|++||+|||+.+     |.|++...  .      .    
T Consensus        10 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~   83 (260)
T PRK05980         10 RDGIALLTLNRPEKL------NALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALR   83 (260)
T ss_pred             ECCEEEEEECCcccc------cCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHH
Confidence            368999999987542      45566788999999999999999999999874     35665421  0      0    


Q ss_pred             HHHH----HHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeee
Q 005581          450 LMWR----EIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEII  520 (690)
Q Consensus       450 ~i~~----~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i  520 (690)
                      .+.+    .+..+ ..+|||||.|+|.|.|||+.|+++||++||++.+.+|.    +|+++.......+..++|.     
T Consensus        84 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~-----  158 (260)
T PRK05980         84 DFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGR-----  158 (260)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCH-----
Confidence            1111    12222 23999999999999999999999999999999999874    4554444333333222221     


Q ss_pred             cccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHH
Q 005581          521 SRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAV  600 (690)
Q Consensus       521 ~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai  600 (690)
                                                               .     ...+.+++|+.++|+||+++||||++...+++.
T Consensus       159 -----------------------------------------~-----~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~  192 (260)
T PRK05980        159 -----------------------------------------K-----RALELLLTGDAFSAERALEIGLVNAVVPHEELL  192 (260)
T ss_pred             -----------------------------------------H-----HHHHHHHcCCccCHHHHHHcCCCCcccCHHHHH
Confidence                                                     1     134557889999999999999999999877666


Q ss_pred             HHHHHHc----CCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccch
Q 005581          601 AIAKQKA----NIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILF  667 (690)
Q Consensus       601 ~~a~~~a----~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~  667 (690)
                      +.+.+++    ..++.      .+...|..+...+..........+ .....++.+.+..+|+++++....+
T Consensus       193 ~~a~~~a~~la~~~p~------a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p  258 (260)
T PRK05980        193 PAARALARRIIRHSPV------AVAAILTAVTRGLNLSIAEGLLIESEQFARMAGSADLREGLAAWIERRRP  258 (260)
T ss_pred             HHHHHHHHHHHhCCHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCC
Confidence            6655544    44321      000001111111111000111111 2234456667778999999876544

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=99.76  E-value=3e-18  Score=177.37  Aligned_cols=215  Identities=17%  Similarity=0.205  Sum_probs=144.5

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhh---h----hHHHHHH
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALA---S----DLMWREI  455 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~a---s----~~i~~~I  455 (690)
                      ++.|++|+++.+-..      |..+..+.++|.+.++++.+| ++|+|||+.+    |.|++...   .    +.+.+.+
T Consensus         7 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   79 (243)
T PRK07854          7 DGQVLTIELQRPERR------NALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEML   79 (243)
T ss_pred             eCCEEEEEeCCCccc------cCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchhHHHHHHHHHHHH
Confidence            367999999998653      455667889999999998865 9999999864    45666532   1    1112222


Q ss_pred             HHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccchhhhhh
Q 005581          456 RLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLA  530 (690)
Q Consensus       456 ~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~  530 (690)
                      +.+ .-+|||||.++|.|.|||+.|+++||++||++.+.+|.    +|+++.......+...+|.               
T Consensus        80 ~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~---------------  144 (243)
T PRK07854         80 HAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGG---------------  144 (243)
T ss_pred             HHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCH---------------
Confidence            333 33999999999999999999999999999999999874    4544443333333322322               


Q ss_pred             ccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHHHHcCCC
Q 005581          531 AEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKANIP  610 (690)
Q Consensus       531 ~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~~~a~l~  610 (690)
                                                     .     ...+.+++|+.++++||+++||||++...+++.+.|++++..+
T Consensus       145 -------------------------------~-----~a~~l~ltg~~~~a~eA~~~Glv~~v~~~~~a~~~a~~l~~~~  188 (243)
T PRK07854        145 -------------------------------G-----RARAMLLGAEKLTAEQALATGMANRIGTLADAQAWAAEIAGLA  188 (243)
T ss_pred             -------------------------------H-----HHHHHHHcCCCcCHHHHHHCCCcccccCHHHHHHHHHHHHhCC
Confidence                                           1     1345678899999999999999999998888999999998876


Q ss_pred             CCCceEEEEecCCCCCHHHHHhcccc--chhcH-HHHHHHHHHhccCCcchhhhcCccchHH
Q 005581          611 EDRQVTLVEMSKPSPTLPEILSSVGN--SIAGV-DRTLKELLQDLTFSDGVQARMDGILFQR  669 (690)
Q Consensus       611 ~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~-~~~~~~~~~~~~~~~g~qa~~~~~~~~~  669 (690)
                      +..      +..    ..+++.....  ..... ......++.+.+..+|+++++....+.|
T Consensus       189 ~~a------~~~----~K~~l~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~  240 (243)
T PRK07854        189 PLA------LQH----AKRVLNDDGAIEEAWPAHKELFDKAWASQDAIEAQVARIEKRPPKF  240 (243)
T ss_pred             HHH------HHH----HHHHHHccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCCCCCC
Confidence            521      111    1112211110  00011 1222444556677789999988765543

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=99.76  E-value=5e-18  Score=177.51  Aligned_cols=164  Identities=23%  Similarity=0.291  Sum_probs=120.0

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhh------hhHH----H
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALA------SDLM----W  452 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~a------s~~i----~  452 (690)
                      ++.|++|+++.+-..      |..+..+.++|.+.++++.+|++||+|||+..    |.|+++..      .+..    .
T Consensus        15 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   88 (261)
T PRK08138         15 ADGVALLRLNRPEAR------NALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTE   88 (261)
T ss_pred             cCCEEEEEEcCCccc------CCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHH
Confidence            468999999987542      45566788999999999999999999999874    45666432      1111    1


Q ss_pred             HHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccchhh
Q 005581          453 REIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKYAE  527 (690)
Q Consensus       453 ~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~~~  527 (690)
                      +.+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.+|.    +|+++.......+..++|.            
T Consensus        89 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~------------  156 (261)
T PRK08138         89 RYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGK------------  156 (261)
T ss_pred             HHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCH------------
Confidence            122222 23999999999999999999999999999999998873    5655554443333333332            


Q ss_pred             hhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHHHHc
Q 005581          528 VLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKA  607 (690)
Q Consensus       528 ~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~~~a  607 (690)
                                                        .|     ..+.+++|+.++|+||+++||||++.+.++.++.+.+++
T Consensus       157 ----------------------------------~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a  197 (261)
T PRK08138        157 ----------------------------------FK-----AMRMALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELA  197 (261)
T ss_pred             ----------------------------------HH-----HHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHH
Confidence                                              11     345578899999999999999999998776555554444

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=99.76  E-value=5.4e-18  Score=176.69  Aligned_cols=219  Identities=14%  Similarity=0.108  Sum_probs=138.8

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh--------hH----
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS--------DL----  450 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as--------~~----  450 (690)
                      ++.|++|+++.+-..      |..+..+.++|.+.++++..|++||+|||+.+    |.|++....        ..    
T Consensus         6 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   79 (255)
T PRK06563          6 RGHVLLIGLDRPAKR------NAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEG   79 (255)
T ss_pred             ECCEEEEEECCcccc------cCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhh
Confidence            368999999987642      45566788999999999999999999999875    456654210        00    


Q ss_pred             HHHHHH-Hh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccc
Q 005581          451 MWREIR-LL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGK  524 (690)
Q Consensus       451 i~~~I~-~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~  524 (690)
                      ..+.+. .+ .-+|||||.|+|.|.|||+.|+++||++||++.+.+|.    +|+++.......+.              
T Consensus        80 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~--------------  145 (255)
T PRK06563         80 GIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFP--------------  145 (255)
T ss_pred             hhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHH--------------
Confidence            112121 12 34899999999999999999999999999999998873    45444333222222              


Q ss_pred             hhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHH--
Q 005581          525 YAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAI--  602 (690)
Q Consensus       525 ~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~--  602 (690)
                                                      +.|...+     ..+.+++|+.++++||+++||||++.+.++.++.  
T Consensus       146 --------------------------------~~vG~~~-----a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~  188 (255)
T PRK06563        146 --------------------------------QAAGWGN-----AMRYLLTGDEFDAQEALRLGLVQEVVPPGEQLERAI  188 (255)
T ss_pred             --------------------------------HHhhHHH-----HHHHHHcCCCcCHHHHHHcCCCcEeeCHHHHHHHHH
Confidence                                            2222222     3455788999999999999999999987755554  


Q ss_pred             --HHHHcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchH
Q 005581          603 --AKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQ  668 (690)
Q Consensus       603 --a~~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~  668 (690)
                        +++++..++.      .+...|..+..............+ .....++.+.+..+|+++++....+.
T Consensus       189 ~~a~~la~~~~~------a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~  251 (255)
T PRK06563        189 ELAERIARAAPL------GVQATLASARAAVREGEAAAAAQLPPELRPLFTSEDAKEGVQAFLERRPAR  251 (255)
T ss_pred             HHHHHHHhcCHH------HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence              4455554431      000011111111111000001111 12234455667788999988765443

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=99.76  E-value=6.4e-18  Score=176.14  Aligned_cols=168  Identities=17%  Similarity=0.213  Sum_probs=120.9

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh------hHH----H
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS------DLM----W  452 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as------~~i----~  452 (690)
                      ++.|++|+++.+-..      |..+..+.++|.+.++++.+|++||+|||+..    |.|++....      +.+    .
T Consensus         9 ~~~v~~itlnrp~~~------Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   82 (255)
T PRK09674          9 QQRVLLLTLNRPEAR------NALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRP   82 (255)
T ss_pred             ECCEEEEEEcCCCcc------CCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHH
Confidence            367999999987642      45566788999999999999999999999874    466665320      011    1


Q ss_pred             HHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccchhh
Q 005581          453 REIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKYAE  527 (690)
Q Consensus       453 ~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~~~  527 (690)
                      +.++.+ .-+|||||.|+|.|.|||+.|+++||++||++.+.++.    +|+++.......+...+|.            
T Consensus        83 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~------------  150 (255)
T PRK09674         83 QLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGK------------  150 (255)
T ss_pred             HHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCH------------
Confidence            112222 23999999999999999999999999999999998873    5555444333333222221            


Q ss_pred             hhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHH----HHHH
Q 005581          528 VLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRA----VAIA  603 (690)
Q Consensus       528 ~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~a----i~~a  603 (690)
                                                        .     ...+.+++|+.++++||+++||||++.+.++.    .+.|
T Consensus       151 ----------------------------------~-----~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a  191 (255)
T PRK09674        151 ----------------------------------S-----LASQMVLTGESITAQQAQQAGLVSEVFPPELTLERALQLA  191 (255)
T ss_pred             ----------------------------------H-----HHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHH
Confidence                                              1     13455788999999999999999999876654    4455


Q ss_pred             HHHcCCCC
Q 005581          604 KQKANIPE  611 (690)
Q Consensus       604 ~~~a~l~~  611 (690)
                      .+++..++
T Consensus       192 ~~l~~~~~  199 (255)
T PRK09674        192 SKIARHSP  199 (255)
T ss_pred             HHHHhCCH
Confidence            55555543

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=99.76  E-value=6.9e-18  Score=176.31  Aligned_cols=218  Identities=16%  Similarity=0.167  Sum_probs=139.5

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-----CCCcchhhh--------h----
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALAS--------D----  449 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-----SpGG~~~as--------~----  449 (690)
                      ++.|++|+++.+-..      |..+..+.++|.+.++++..|++||+|||+..     |.|++....        .    
T Consensus        10 ~~~v~~itlnrp~~~------Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~   83 (259)
T TIGR01929        10 TDGIAKITINRPQVR------NAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHR   83 (259)
T ss_pred             CCCEEEEEecCCccc------cCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHH
Confidence            367999999987542      45566788999999999999999999999874     345654210        0    


Q ss_pred             -HHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeeccc
Q 005581          450 -LMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRG  523 (690)
Q Consensus       450 -~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g  523 (690)
                       .+.+.+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.+|.    +|+++.......+...           
T Consensus        84 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~-----------  152 (259)
T TIGR01929        84 LNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARI-----------  152 (259)
T ss_pred             HHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHH-----------
Confidence             011112222 33999999999999999999999999999999998874    4544433332222222           


Q ss_pred             chhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHH-
Q 005581          524 KYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAI-  602 (690)
Q Consensus       524 ~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~-  602 (690)
                                                         |...|     ..+.+++|+.++|+||+++||||++.+.+++.+. 
T Consensus       153 -----------------------------------vG~~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a  192 (259)
T TIGR01929       153 -----------------------------------VGQKK-----AREIWFLCRQYDAEQALDMGLVNTVVPLADLEKET  192 (259)
T ss_pred             -----------------------------------hHHHH-----HHHHHHhCCccCHHHHHHcCCcccccCHHHHHHHH
Confidence                                               22222     4456788999999999999999999987765554 


Q ss_pred             ---HHHHcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchH
Q 005581          603 ---AKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQ  668 (690)
Q Consensus       603 ---a~~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~  668 (690)
                         |++++..++.      .+...|..+...... .......+ .....++.+.+..+|+++++.+..+.
T Consensus       193 ~~~a~~la~~~~~------a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~  255 (259)
T TIGR01929       193 VRWCREILQKSPM------AIRMLKAALNADCDG-QAGLQELAGNATMLFYMTEEGQEGRNAFLEKRQPD  255 (259)
T ss_pred             HHHHHHHHhCCHH------HHHHHHHHHHhhhcc-chHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCC
Confidence               4455555431      011111111111110 00000011 22234555667789999998765544

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=99.75  E-value=7.5e-18  Score=175.78  Aligned_cols=163  Identities=21%  Similarity=0.264  Sum_probs=119.0

Q ss_pred             CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh------h----HHHH
Q 005581          388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS------D----LMWR  453 (690)
Q Consensus       388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as------~----~i~~  453 (690)
                      +.|++|+++.+-.      .|..+..+.++|.+.++++..|++||+|||+..    |.|++....      +    .+.+
T Consensus        12 ~~v~~itlnrp~~------~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   85 (257)
T PRK05862         12 GRVGLITLNRPKA------LNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYIT   85 (257)
T ss_pred             CCEEEEEEcCCcc------cCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHH
Confidence            6799999998754      245566788999999999999999999999875    356654220      1    1112


Q ss_pred             HHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccchhhh
Q 005581          454 EIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKYAEV  528 (690)
Q Consensus       454 ~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~  528 (690)
                      .+..+ .-+|||||.++|.|.|||+.|+++||++||++.+.+|.    +|+++.......+..++|.             
T Consensus        86 ~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~-------------  152 (257)
T PRK05862         86 NWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGK-------------  152 (257)
T ss_pred             HHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCH-------------
Confidence            22233 33999999999999999999999999999999998873    5555444333333322332             


Q ss_pred             hhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHHHHc
Q 005581          529 LAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKA  607 (690)
Q Consensus       529 ~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~~~a  607 (690)
                                                       .|     ..+.+++|+.++++||+++||||++.+.++..+.|.+++
T Consensus       153 ---------------------------------~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a  193 (257)
T PRK05862        153 ---------------------------------AK-----AMDLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAA  193 (257)
T ss_pred             ---------------------------------HH-----HHHHHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHH
Confidence                                             11     345578899999999999999999998776655555544

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=99.75  E-value=7.5e-18  Score=176.22  Aligned_cols=219  Identities=17%  Similarity=0.132  Sum_probs=140.5

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-----CCCcchhhh-------hHH---
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALAS-------DLM---  451 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-----SpGG~~~as-------~~i---  451 (690)
                      ++.|++|+++.+ ..      |..+..+.++|.+.++++..|++||+|||+.+     |.|++....       ...   
T Consensus        10 ~~~v~~itlnrp-~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~   82 (261)
T PRK03580         10 NGSILEITLDRP-KA------NAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPG   82 (261)
T ss_pred             ECCEEEEEECCc-cc------cCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhh
Confidence            367999999998 32      45566788999999999999999999999863     456655310       001   


Q ss_pred             -HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccch
Q 005581          452 -WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKY  525 (690)
Q Consensus       452 -~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~  525 (690)
                       ...+..+ ..+|||||.|+|.|.|||+.|+++||++||++++.+|.    +|+++.......+..++|.          
T Consensus        83 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~----------  152 (261)
T PRK03580         83 GFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPP----------  152 (261)
T ss_pred             hhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCH----------
Confidence             1122222 33999999999999999999999999999999998873    5555444333333333332          


Q ss_pred             hhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHHH
Q 005581          526 AEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQ  605 (690)
Q Consensus       526 ~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~~  605 (690)
                                                          .     ...+.+++|+.|+|+||+++||||++.+.++..+.+.+
T Consensus       153 ------------------------------------~-----~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~  191 (261)
T PRK03580        153 ------------------------------------A-----IANEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRARE  191 (261)
T ss_pred             ------------------------------------H-----HHHHHHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHH
Confidence                                                1     13345678999999999999999999987765555554


Q ss_pred             ----HcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-----HHHHHHHHhccCCcchhhhcCccchHH
Q 005581          606 ----KANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-----RTLKELLQDLTFSDGVQARMDGILFQR  669 (690)
Q Consensus       606 ----~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~g~qa~~~~~~~~~  669 (690)
                          ++..++.      .+...|..+..............+     .....++.+.+..+|+++++....+.|
T Consensus       192 ~a~~la~~~~~------a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr~~~~  258 (261)
T PRK03580        192 LAQQLVNSAPL------AIAALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKRDPVW  258 (261)
T ss_pred             HHHHHHhCCHH------HHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence                4444431      000011111111110000001111     122345666777899999988765544

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=99.75  E-value=7.1e-18  Score=177.38  Aligned_cols=219  Identities=18%  Similarity=0.113  Sum_probs=140.3

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh--------------
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS--------------  448 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as--------------  448 (690)
                      ++.|++|+++.+=.      .|..+..+.++|.+.++++.+|++||+|||+.+    |.|+++...              
T Consensus        13 ~~~v~~itlnrp~~------~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~   86 (272)
T PRK06142         13 ADHVAQVTLNRPGK------GNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLAR   86 (272)
T ss_pred             cCCEEEEEEcCCCc------cCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhccccccccccc
Confidence            46899999998754      245667788999999999999999999999985    456654321              


Q ss_pred             --hHH-------HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcC
Q 005581          449 --DLM-------WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIG  514 (690)
Q Consensus       449 --~~i-------~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klG  514 (690)
                        +..       .+.+..+ ..+|||||.|+|.|.|||+.|+++||++||++.+.+|.    +|+++.......+...+|
T Consensus        87 ~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G  166 (272)
T PRK06142         87 PRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRIIG  166 (272)
T ss_pred             chHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHHhC
Confidence              001       1112222 24999999999999999999999999999999998873    455444333333322222


Q ss_pred             CceeeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCccccc
Q 005581          515 FNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALG  594 (690)
Q Consensus       515 i~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig  594 (690)
                      .                                              .|     ..+.+++|+.++|+||+++||||++.
T Consensus       167 ~----------------------------------------------~~-----a~~l~l~g~~~~a~eA~~~GLv~~vv  195 (272)
T PRK06142        167 D----------------------------------------------GH-----LRELALTGRDIDAAEAEKIGLVNRVY  195 (272)
T ss_pred             H----------------------------------------------HH-----HHHHHHhCCCcCHHHHHHcCCccEec
Confidence            2                                              11     34557889999999999999999998


Q ss_pred             Ch-HHHH----HHHHHHcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchH
Q 005581          595 GF-SRAV----AIAKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQ  668 (690)
Q Consensus       595 ~~-~~ai----~~a~~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~  668 (690)
                      .. +++.    +.+.++++.++.      .+...|..+..............+ .....++.+.+..+|+.+++.+..+.
T Consensus       196 ~~~~~l~~~a~~~a~~ia~~~~~------a~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr~p~  269 (272)
T PRK06142        196 DDADALLAAAHATAREIAAKSPL------AVRGTKEVLDYMRDHRVADGLRYVATWNAAMLPSKDLTEAIAAHMEKRPPE  269 (272)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCCCC
Confidence            74 5544    445555555431      010011111111111000001111 12234456677889999998876554

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=99.75  E-value=7.9e-18  Score=177.54  Aligned_cols=220  Identities=18%  Similarity=0.121  Sum_probs=139.6

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh---------hH---
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS---------DL---  450 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as---------~~---  450 (690)
                      ++.|++|+++.+=.      .|..+..+.++|.+.++++..|++||+|||+.+    |.|+++...         ..   
T Consensus        24 ~~~v~~itlnrp~~------~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~   97 (277)
T PRK08258         24 DDGVATITLNRPER------KNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLA   97 (277)
T ss_pred             ECCEEEEEeCCccc------ccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHH
Confidence            46899999998743      244556688999999999999999999999875    466655321         00   


Q ss_pred             H----HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccc-cccchHHHHHHcCCceeee
Q 005581          451 M----WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVT-GKFNLGKLYEKIGFNKEII  520 (690)
Q Consensus       451 i----~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~-~~~~~~~l~~klGi~~~~i  520 (690)
                      +    .+.+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.+|.    +|+++ .......+...+|.     
T Consensus        98 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~-----  172 (277)
T PRK08258         98 FTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQ-----  172 (277)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCH-----
Confidence            1    1122223 23999999999999999999999999999999998873    45442 12222222222221     


Q ss_pred             cccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHH
Q 005581          521 SRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAV  600 (690)
Q Consensus       521 ~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai  600 (690)
                                                               .|     ..+.+++|+.++|+||+++||||++...++..
T Consensus       173 -----------------------------------------~~-----a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~  206 (277)
T PRK08258        173 -----------------------------------------GR-----ASELLYTGRSMSAEEGERWGFFNRLVEPEELL  206 (277)
T ss_pred             -----------------------------------------HH-----HHHHHHcCCCCCHHHHHHcCCCcEecCHHHHH
Confidence                                                     11     34557889999999999999999999877665


Q ss_pred             HHHHHH----cCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchHH
Q 005581          601 AIAKQK----ANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQR  669 (690)
Q Consensus       601 ~~a~~~----a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~~  669 (690)
                      +.+.++    +..++.      .+...|..+...+..........+ .....++.+.+..+|+++++....+.|
T Consensus       207 ~~a~~~a~~la~~~~~------a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~  274 (277)
T PRK08258        207 AEAQALARRLAAGPTF------AHGMTKTMLHQEWDMGLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKRKPVF  274 (277)
T ss_pred             HHHHHHHHHHHhCCHH------HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence            555544    444331      000011111111111000111111 222445566777899999988766554

>PLN02600 enoyl-CoA hydratase

Probab=99.75  E-value=7.4e-18  Score=175.30  Aligned_cols=219  Identities=17%  Similarity=0.155  Sum_probs=140.1

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-----CCCcchhhh--------hHHHH
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALAS--------DLMWR  453 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-----SpGG~~~as--------~~i~~  453 (690)
                      ++.|++|+++.+-..      |..+..+.++|.+.++++.+|++||+|||+..     |.|+++...        ..+.+
T Consensus         2 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~   75 (251)
T PLN02600          2 DSGIVELRLDRPEAK------NAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVN   75 (251)
T ss_pred             CCcEEEEEEcCCccc------CCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHH
Confidence            368999999987542      45667789999999999999999999999864     456655320        11122


Q ss_pred             ----HHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccc
Q 005581          454 ----EIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGK  524 (690)
Q Consensus       454 ----~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~  524 (690)
                          .+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.+|.    +|+++.......+..++|.         
T Consensus        76 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~---------  146 (251)
T PLN02600         76 SLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGR---------  146 (251)
T ss_pred             HHHHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCH---------
Confidence                12222 23999999999999999999999999999999998874    4443333222222222221         


Q ss_pred             hhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHH-
Q 005581          525 YAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIA-  603 (690)
Q Consensus       525 ~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a-  603 (690)
                                                           .|     ..+.+++|+.++++||+++||||++.+.+++++.+ 
T Consensus       147 -------------------------------------~~-----a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~  184 (251)
T PLN02600        147 -------------------------------------SR-----AKELIFTGRRIGAREAASMGLVNYCVPAGEAYEKAL  184 (251)
T ss_pred             -------------------------------------HH-----HHHHHHhCCccCHHHHHHcCCCcEeeChhHHHHHHH
Confidence                                                 11     34567889999999999999999999877665544 


Q ss_pred             ---HHHcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchH
Q 005581          604 ---KQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQ  668 (690)
Q Consensus       604 ---~~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~  668 (690)
                         .+++..++.      .+...|..+..............+ .....++.+.+..+|+++++....+.
T Consensus       185 ~~a~~la~~~p~------a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~  247 (251)
T PLN02600        185 ELAQEINQKGPL------AIKMAKKAINEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAFAEKRKPV  247 (251)
T ss_pred             HHHHHHHhCCHH------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCC
Confidence               455555431      000111112111111000011111 12244556667789999998766544

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=99.75  E-value=1e-17  Score=175.34  Aligned_cols=218  Identities=13%  Similarity=0.170  Sum_probs=139.1

Q ss_pred             CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh--------hH-----
Q 005581          388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS--------DL-----  450 (690)
Q Consensus       388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as--------~~-----  450 (690)
                      +.|++|+++.+-..      |..+..+.++|.+.++++.+|++||+|||+.+    |.|+++..-        ..     
T Consensus        13 ~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   86 (262)
T PRK07468         13 RGVATLTLNRPEKH------NALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEA   86 (262)
T ss_pred             CcEEEEEEcCcccc------cCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHH
Confidence            57999999987542      45667789999999999999999999999875    466665310        00     


Q ss_pred             --HHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeeccc
Q 005581          451 --MWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRG  523 (690)
Q Consensus       451 --i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g  523 (690)
                        +.+.++.+ .-+|||||.|+|.|.|||+.|+++||++||++.+.+|.    +|+++...... ++.++|         
T Consensus        87 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~-~~~~vG---------  156 (262)
T PRK07468         87 RRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPY-VVARMG---------  156 (262)
T ss_pred             HHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhh-HHhhcc---------
Confidence              11112223 33999999999999999999999999999999998873    44443332111 111122         


Q ss_pred             chhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHH-
Q 005581          524 KYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAI-  602 (690)
Q Consensus       524 ~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~-  602 (690)
                                                           ..|     ..+.+++|+.++++||+++||||++.+.++..+. 
T Consensus       157 -------------------------------------~~~-----a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~  194 (262)
T PRK07468        157 -------------------------------------EAN-----ARRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAV  194 (262)
T ss_pred             -------------------------------------HHH-----HHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHH
Confidence                                                 111     3455788999999999999999999887655444 


Q ss_pred             ---HHHHcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchHH
Q 005581          603 ---AKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQR  669 (690)
Q Consensus       603 ---a~~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~~  669 (690)
                         +.+++..++.      .+...|..+..............+ .....++.+.+..+|+++++.+..+.|
T Consensus       195 ~~~a~~l~~~~~~------a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~  259 (262)
T PRK07468        195 EAEVTPYLSCAPG------AVAAAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKRAPAW  259 (262)
T ss_pred             HHHHHHHHhcCHH------HHHHHHHHHHhhhccChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence               5555665432      010111111111100001111111 122445556677789999988766543

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=99.75  E-value=8.9e-18  Score=175.15  Aligned_cols=163  Identities=24%  Similarity=0.283  Sum_probs=118.2

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh------hH---H--
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS------DL---M--  451 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as------~~---i--  451 (690)
                      ++.|++|+++.+-.       |..+..+.++|.+.++++.+|++||+|||+..    |.|++....      +.   +  
T Consensus         9 ~~~v~~itl~rp~~-------Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   81 (257)
T PRK07658          9 EDHVAVITLNHPPA-------NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQ   81 (257)
T ss_pred             eCCEEEEEECCCCC-------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHH
Confidence            46899999998722       45566788999999999999999999999874    466664310      01   1  


Q ss_pred             --HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccc
Q 005581          452 --WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGK  524 (690)
Q Consensus       452 --~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~  524 (690)
                        .+.++.+ ..+|||||+++|.|.|||+.|+++||++||++++.+|.    +|+++.......+...+|.         
T Consensus        82 ~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~---------  152 (257)
T PRK07658         82 LGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGK---------  152 (257)
T ss_pred             HHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCH---------
Confidence              1122223 33999999999999999999999999999999998873    5655544433333333332         


Q ss_pred             hhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHH
Q 005581          525 YAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAK  604 (690)
Q Consensus       525 ~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~  604 (690)
                                                           .|     ..+.+++|+.++++||+++||||++...+++.+.+.
T Consensus       153 -------------------------------------~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~  190 (257)
T PRK07658        153 -------------------------------------AK-----ALEMMLTSEPITGAEALKWGLVNGVFPEETLLDDAK  190 (257)
T ss_pred             -------------------------------------HH-----HHHHHHcCCCcCHHHHHHcCCcCeecChhHHHHHHH
Confidence                                                 11     335568899999999999999999998775555444


Q ss_pred             HHc
Q 005581          605 QKA  607 (690)
Q Consensus       605 ~~a  607 (690)
                      +++
T Consensus       191 ~~a  193 (257)
T PRK07658        191 KLA  193 (257)
T ss_pred             HHH
Confidence            433

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=99.75  E-value=8.4e-18  Score=177.16  Aligned_cols=219  Identities=16%  Similarity=0.126  Sum_probs=139.3

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh--------------
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS--------------  448 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as--------------  448 (690)
                      .+.|++|+++.|-..      |..+..+.++|.+.++++..|++||+|||+..    |.|+++...              
T Consensus        15 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~   88 (275)
T PLN02664         15 NSSVFHLNLNRPSQR------NALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGR   88 (275)
T ss_pred             CCCEEEEEECCCCcc------CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchh
Confidence            478999999998642      45566788999999999999999999999875    466655311              


Q ss_pred             --hHH-------HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcC
Q 005581          449 --DLM-------WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIG  514 (690)
Q Consensus       449 --~~i-------~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klG  514 (690)
                        +.+       .+.+..+ ..+|||||.|+|.|.|||+.|+++||++||++++.++.    +|+.+.......+..++|
T Consensus        89 ~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG  168 (275)
T PLN02664         89 SGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVG  168 (275)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhC
Confidence              001       1112222 33999999999999999999999999999999998873    444443332222322222


Q ss_pred             CceeeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCccccc
Q 005581          515 FNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALG  594 (690)
Q Consensus       515 i~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig  594 (690)
                      .                                              .|     ..+.+++|+.|+|+||+++||||++.
T Consensus       169 ~----------------------------------------------~~-----A~~l~ltg~~~~a~eA~~~GLv~~vv  197 (275)
T PLN02664        169 Y----------------------------------------------GN-----AMELALTGRRFSGSEAKELGLVSRVF  197 (275)
T ss_pred             H----------------------------------------------HH-----HHHHHHhCCCCCHHHHHHcCCCceee
Confidence            2                                              21     44557889999999999999999998


Q ss_pred             Ch-HHHHH----HHHHHcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchH
Q 005581          595 GF-SRAVA----IAKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQ  668 (690)
Q Consensus       595 ~~-~~ai~----~a~~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~  668 (690)
                      +. ++..+    .|.+++..++..      +...|..+..............+ .....++.+.+..+|+++++....+.
T Consensus       198 ~~~~~l~~~~~~~a~~ia~~~p~a------~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~  271 (275)
T PLN02664        198 GSKEDLDEGVRLIAEGIAAKSPLA------VTGTKAVLLRSRELSVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKRKPV  271 (275)
T ss_pred             CChhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCC
Confidence            73 54433    455566654320      00111112111111000011111 11233445567789999998865544

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=99.75  E-value=9.5e-18  Score=175.28  Aligned_cols=219  Identities=17%  Similarity=0.172  Sum_probs=138.6

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-----CCCcchhhh--------hHH--
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALAS--------DLM--  451 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-----SpGG~~~as--------~~i--  451 (690)
                      ++.|++|+++.+-..      |..+..+.++|.++++++..|++||+|||+..     |.|++...-        ..+  
T Consensus        11 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~   84 (260)
T PRK05809         11 EGHIAVVTINRPKAL------NALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGL   84 (260)
T ss_pred             eCCEEEEEECCCccc------CCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHH
Confidence            367999999987642      45566788999999999999999999999874     345544210        011  


Q ss_pred             --HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccc
Q 005581          452 --WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGK  524 (690)
Q Consensus       452 --~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~  524 (690)
                        .+.+..+ .-+|||||.|+|.|.|||+.|+++||++||++++.++.    +|+++.......+..++|.         
T Consensus        85 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~---------  155 (260)
T PRK05809         85 LGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGP---------  155 (260)
T ss_pred             HHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCH---------
Confidence              1122223 33999999999999999999999999999999998873    4544433332223222232         


Q ss_pred             hhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHH
Q 005581          525 YAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAK  604 (690)
Q Consensus       525 ~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~  604 (690)
                                                           .     ...+.+++|+.++++||+++||||++.+.+++.+.+.
T Consensus       156 -------------------------------------~-----~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~  193 (260)
T PRK05809        156 -------------------------------------G-----KAKELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAK  193 (260)
T ss_pred             -------------------------------------H-----HHHHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHH
Confidence                                                 1     1345578899999999999999999988776555554


Q ss_pred             ----HHcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchH
Q 005581          605 ----QKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQ  668 (690)
Q Consensus       605 ----~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~  668 (690)
                          +++..++.      .+...|..+..............+ .....++.+.+..+|+++++....+.
T Consensus       194 ~~a~~la~~~~~------a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~  256 (260)
T PRK05809        194 ALANKIAANAPI------AVKLCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKREKN  256 (260)
T ss_pred             HHHHHHHhCCHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence                44444321      000011111111111000011111 12244555667789999998765543

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=99.75  E-value=1.1e-17  Score=174.98  Aligned_cols=220  Identities=16%  Similarity=0.156  Sum_probs=140.6

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-----CCCcchhhh--------hH---
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALAS--------DL---  450 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-----SpGG~~~as--------~~---  450 (690)
                      ++.|++|+++.+-..      |..+..+..+|.++++++..|+++|+|||+..     |.|++....        ..   
T Consensus        11 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~   84 (260)
T PRK07657         11 TPHVVKITLNRPRAA------NALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVS   84 (260)
T ss_pred             cCCEEEEEEeCCccc------CCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHH
Confidence            368999999987642      45566788999999999999999999999874     345554210        01   


Q ss_pred             -HHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccc
Q 005581          451 -MWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGK  524 (690)
Q Consensus       451 -i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~  524 (690)
                       +.+.+..+ ..+|||||.|+|.|.|||+.|+++||++||++.+.+|.    +|+++.......+..++|.         
T Consensus        85 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~---------  155 (260)
T PRK07657         85 LIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGV---------  155 (260)
T ss_pred             HHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCH---------
Confidence             11122223 33999999999999999999999999999999999873    5554444333333322221         


Q ss_pred             hhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHH
Q 005581          525 YAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAK  604 (690)
Q Consensus       525 ~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~  604 (690)
                                                           .     ...+.+++|+.++|+||+++||||++...++..+.+.
T Consensus       156 -------------------------------------~-----~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~  193 (260)
T PRK07657        156 -------------------------------------G-----RAKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAI  193 (260)
T ss_pred             -------------------------------------H-----HHHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHH
Confidence                                                 1     1345578899999999999999999998777655555


Q ss_pred             HH----cCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchHH
Q 005581          605 QK----ANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQR  669 (690)
Q Consensus       605 ~~----a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~~  669 (690)
                      ++    +..++.      .+...|..+..............+ .....++.+.+..+|+++++.+..+.|
T Consensus       194 ~~a~~l~~~~~~------a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r~~~~  257 (260)
T PRK07657        194 EIAEKIASNGPI------AVRQAKEAISNGIQVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRKPMY  257 (260)
T ss_pred             HHHHHHHhCCHH------HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence            54    444321      000011111111110000001111 122445566677899999988665543

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=99.74  E-value=1.3e-17  Score=174.56  Aligned_cols=217  Identities=19%  Similarity=0.202  Sum_probs=141.0

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-----CCCcchhh------hh---H--
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALA------SD---L--  450 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-----SpGG~~~a------s~---~--  450 (690)
                      ++.|++|+++.+-..      |..+..+.++|.+.++++.+|++||+|||+.+     |.|++...      .+   .  
T Consensus        15 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~   88 (262)
T PRK06144         15 RGGIARITFNRPAAR------NAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYE   88 (262)
T ss_pred             eCCEEEEEecCCccc------CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHH
Confidence            368999999987653      44556778999999999999999999999874     35665421      01   1  


Q ss_pred             --HHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc-----ccccccccchHHHHHHcCCceeeecc
Q 005581          451 --MWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS-----IGVVTGKFNLGKLYEKIGFNKEIISR  522 (690)
Q Consensus       451 --i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS-----IGv~~~~~~~~~l~~klGi~~~~i~~  522 (690)
                        +.+.+..+ ..+|||||.|+|.|.|||+.|+++||++||++.+.+|.     +|+++.......+.+++|.       
T Consensus        89 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~-------  161 (262)
T PRK06144         89 RRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGA-------  161 (262)
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCH-------
Confidence              11122222 34999999999999999999999999999999998873     4444443333333333332       


Q ss_pred             cchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHH-
Q 005581          523 GKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVA-  601 (690)
Q Consensus       523 g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~-  601 (690)
                                                             .+     ..+.+++|+.++|+||+++||||++.+.+++.+ 
T Consensus       162 ---------------------------------------~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~  197 (262)
T PRK06144        162 ---------------------------------------AR-----VKDMLFTARLLEAEEALAAGLVNEVVEDAALDAR  197 (262)
T ss_pred             ---------------------------------------HH-----HHHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHH
Confidence                                                   11     335578899999999999999999988766554 


Q ss_pred             ---HHHHHcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHHHHHHHHHHhccCCcchhhhcCccchHH
Q 005581          602 ---IAKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVDRTLKELLQDLTFSDGVQARMDGILFQR  669 (690)
Q Consensus       602 ---~a~~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~qa~~~~~~~~~  669 (690)
                         .|++++..++.      .+...|..+.....   ............++.+.+..+|+++++....+.|
T Consensus       198 a~~~a~~i~~~~~~------a~~~~K~~l~~~~~---~~l~~~~~~~~~~~~~~~~~e~~~af~~kr~p~~  259 (262)
T PRK06144        198 ADALAELLAAHAPL------TLRATKEALRRLRR---EGLPDGDDLIRMCYMSEDFREGVEAFLEKRPPKW  259 (262)
T ss_pred             HHHHHHHHHhCCHH------HHHHHHHHHHHhhh---cCHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCC
Confidence               45555555431      00001111111111   1111111233445666777889999988665543

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=99.74  E-value=1e-17  Score=175.55  Aligned_cols=168  Identities=20%  Similarity=0.204  Sum_probs=119.1

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcc-hHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh-------------
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSG-IIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS-------------  448 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~-~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as-------------  448 (690)
                      ++.|++|+++.+-..      |..+. .+.++|.+.++++..|++||+|||+..    |.|++....             
T Consensus        10 ~~~v~~itlnrp~~~------Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~   83 (266)
T PRK09245         10 DGHIVTLTMNRPETR------NALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPAD   83 (266)
T ss_pred             ECCEEEEEECCcccc------cCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccchh
Confidence            368999999987652      34443 578899999999999999999999875    466654210             


Q ss_pred             --hHHH----HHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCce
Q 005581          449 --DLMW----REIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNK  517 (690)
Q Consensus       449 --~~i~----~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~  517 (690)
                        ..+.    +.+..+ ..+|||||.|+|+|.|||+.|+++||++||++.+.+|.    +|+++.......+...+|   
T Consensus        84 ~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG---  160 (266)
T PRK09245         84 IRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIG---  160 (266)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhh---
Confidence              0111    112222 34999999999999999999999999999999998873    555544433222222222   


Q ss_pred             eeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChH
Q 005581          518 EIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFS  597 (690)
Q Consensus       518 ~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~  597 (690)
                                                                 ..|     ..+.+++|+.++++||+++||||++...+
T Consensus       161 -------------------------------------------~~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~  192 (266)
T PRK09245        161 -------------------------------------------MAR-----AAEMAFTGDAIDAATALEWGLVSRVVPAD  192 (266)
T ss_pred             -------------------------------------------HHH-----HHHHHHcCCCcCHHHHHHcCCcceecCHH
Confidence                                                       111     34557889999999999999999998876


Q ss_pred             HHHHHH----HHHcCCCC
Q 005581          598 RAVAIA----KQKANIPE  611 (690)
Q Consensus       598 ~ai~~a----~~~a~l~~  611 (690)
                      +..+.+    .+++..++
T Consensus       193 ~l~~~a~~~a~~l~~~~~  210 (266)
T PRK09245        193 QLLPAARALAERIAANPP  210 (266)
T ss_pred             HHHHHHHHHHHHHHhCCH
Confidence            655544    44555443

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=99.74  E-value=1.2e-17  Score=174.40  Aligned_cols=219  Identities=16%  Similarity=0.118  Sum_probs=140.0

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-----CCCcchhhh--------hH---
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALAS--------DL---  450 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-----SpGG~~~as--------~~---  450 (690)
                      ++.|++|+++.+-.       |..+..+.++|.++++++.+|++||+|||+..     |.|++....        ..   
T Consensus        10 ~~~v~~itlnrp~~-------Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~   82 (258)
T PRK09076         10 DGHVAILTLNNPPA-------NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMAR   82 (258)
T ss_pred             ECCEEEEEECCCCc-------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHH
Confidence            36899999998831       45566788999999999999999999999874     345654210        01   


Q ss_pred             -HHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccc
Q 005581          451 -MWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGK  524 (690)
Q Consensus       451 -i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~  524 (690)
                       +.+.+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.++.    +|+++.......+..++|.         
T Consensus        83 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~---------  153 (258)
T PRK09076         83 RFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGE---------  153 (258)
T ss_pred             HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCH---------
Confidence             11223333 33999999999999999999999999999999998873    5555444333333333332         


Q ss_pred             hhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHH--
Q 005581          525 YAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAI--  602 (690)
Q Consensus       525 ~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~--  602 (690)
                                                           .|     ..+.+++|+.++|+||+++||||++.+.++..+.  
T Consensus       154 -------------------------------------~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~  191 (258)
T PRK09076        154 -------------------------------------GW-----AKRMILCGERVDAATALRIGLVEEVVEKGEAREAAL  191 (258)
T ss_pred             -------------------------------------HH-----HHHHHHcCCcCCHHHHHHCCCCceecCchhHHHHHH
Confidence                                                 11     3345678999999999999999999886655444  


Q ss_pred             --HHHHcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchHH
Q 005581          603 --AKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQR  669 (690)
Q Consensus       603 --a~~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~~  669 (690)
                        +.+++..++.      .+...|..+..............+ .....++.+.+..+|+++++....++|
T Consensus       192 ~~a~~l~~~~~~------a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~  255 (258)
T PRK09076        192 ALAQKVANQSPS------AVAACKTLIQAARNGPRAAALALERELFVDLFDTEDQREGVNAFLEKRAPQW  255 (258)
T ss_pred             HHHHHHHhCCHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence              4555554431      000011111111110000111111 223445556677899999988765554

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=99.74  E-value=1.5e-17  Score=173.22  Aligned_cols=216  Identities=19%  Similarity=0.179  Sum_probs=140.6

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh-----hHHH-HHHH
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS-----DLMW-REIR  456 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as-----~~i~-~~I~  456 (690)
                      ++.|++|+++.+-..      |..+..+.++|.+.++++.+|++||+|||+..    |.|++....     ...+ +.+.
T Consensus        10 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   83 (254)
T PRK08252         10 RGRVLIITINRPEAR------NAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFG   83 (254)
T ss_pred             ECCEEEEEECCCccc------CCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHH
Confidence            368999999987642      45566788999999999999999999999874    466655320     0111 1111


Q ss_pred             H---hcCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccchhhhh
Q 005581          457 L---LSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVL  529 (690)
Q Consensus       457 ~---l~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~  529 (690)
                      .   ...+|||||.|+|.|.|||+.|+++||++||++.+.++.    +|+++.......+..++|.              
T Consensus        84 ~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~--------------  149 (254)
T PRK08252         84 GLTERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPY--------------  149 (254)
T ss_pred             HHHHhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCH--------------
Confidence            1   134899999999999999999999999999999998873    5555544433333333332              


Q ss_pred             hccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHH----HH
Q 005581          530 AAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIA----KQ  605 (690)
Q Consensus       530 ~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a----~~  605 (690)
                                                      .|     ..+.+++|+.++++||+++||||++.+.++.++.+    .+
T Consensus       150 --------------------------------~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~  192 (254)
T PRK08252        150 --------------------------------HI-----AMELALTGDMLTAERAHELGLVNRLTEPGQALDAALELAER  192 (254)
T ss_pred             --------------------------------HH-----HHHHHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHH
Confidence                                            11     34557889999999999999999998866555544    44


Q ss_pred             HcCCCCCCceEEEEecCCCCCHHHHHhcc-ccch---hcHH-HHHHHHHHhccCCcchhhhcCccchHH
Q 005581          606 KANIPEDRQVTLVEMSKPSPTLPEILSSV-GNSI---AGVD-RTLKELLQDLTFSDGVQARMDGILFQR  669 (690)
Q Consensus       606 ~a~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~---~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~~  669 (690)
                      ++..++.      .+..    ...++... ..+.   ...+ .....++.+.+..+|+++++....+.|
T Consensus       193 l~~~~~~------a~~~----~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~  251 (254)
T PRK08252        193 IAANGPL------AVAA----SKRIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAFAEKRAPVW  251 (254)
T ss_pred             HHhCCHH------HHHH----HHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence            5444331      0000    11222111 0011   1111 122445566677899999987655443

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=99.74  E-value=1.5e-17  Score=173.68  Aligned_cols=219  Identities=15%  Similarity=0.136  Sum_probs=140.0

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccC-----CCcchhhh---------hHHH
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDS-----PGGDALAS---------DLMW  452 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinS-----pGG~~~as---------~~i~  452 (690)
                      ++.|++|+++.+-..      |..+..+.++|.+.++++..|++||+|||+.+.     .|++....         ...+
T Consensus        11 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~   84 (259)
T PRK06494         11 KGHVTIVTLNRPEVM------NALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGF   84 (259)
T ss_pred             ECCEEEEEEcCcccc------CCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHH
Confidence            368999999988642      445667889999999999999999999998753     46654210         0011


Q ss_pred             HHHH-HhcCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccchhh
Q 005581          453 REIR-LLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKYAE  527 (690)
Q Consensus       453 ~~I~-~l~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~~~  527 (690)
                      ..+. .+.-+|||||.|+|.|.|||+.|+++||++||++.+.+|.    +|+++.......+.+++|.            
T Consensus        85 ~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~------------  152 (259)
T PRK06494         85 GGLTSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGL------------  152 (259)
T ss_pred             HHHHHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCH------------
Confidence            1122 1234999999999999999999999999999999999884    5555444333333222322            


Q ss_pred             hhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHH----HHH
Q 005581          528 VLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAV----AIA  603 (690)
Q Consensus       528 ~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai----~~a  603 (690)
                                                        .     ...+.+++|+.++|+||+++||||++...++..    +.|
T Consensus       153 ----------------------------------~-----~a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a  193 (259)
T PRK06494        153 ----------------------------------K-----RAMGMILTGRRVTAREGLELGFVNEVVPAGELLAAAERWA  193 (259)
T ss_pred             ----------------------------------H-----HHHHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHH
Confidence                                              1     133457889999999999999999998876544    455


Q ss_pred             HHHcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH---HHHHHHHHhccCCcchhhhcCccchH
Q 005581          604 KQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD---RTLKELLQDLTFSDGVQARMDGILFQ  668 (690)
Q Consensus       604 ~~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~g~qa~~~~~~~~  668 (690)
                      ++++..++.      .+...|..+..............+   .....++.+.+..+|+++++....+.
T Consensus       194 ~~la~~~~~------a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr~p~  255 (259)
T PRK06494        194 DDILACSPL------SIRASKQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKRPPR  255 (259)
T ss_pred             HHHHhcCHH------HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCC
Confidence            555555431      011111111111111000111111   12234455667789999998765444

>PRK08139 enoyl-CoA hydratase; Validated

Probab=99.74  E-value=1.2e-17  Score=175.16  Aligned_cols=219  Identities=14%  Similarity=0.120  Sum_probs=139.1

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh---------hHHH-
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS---------DLMW-  452 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as---------~~i~-  452 (690)
                      .+.|++|+++.+-..      |..+..+.++|.+.++++..|++||+|||+.+    |.|++....         ..+. 
T Consensus        18 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   91 (266)
T PRK08139         18 RDGVATLTLNRPQAF------NALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFA   91 (266)
T ss_pred             eCCEEEEEeCCcccc------cCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHH
Confidence            368999999987542      45566788999999999999999999999875    456655310         1111 


Q ss_pred             ---HHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccc
Q 005581          453 ---REIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGK  524 (690)
Q Consensus       453 ---~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~  524 (690)
                         +.+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.+|.    +|+++..+. ..+...+|          
T Consensus        92 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~-~~l~r~vG----------  160 (266)
T PRK08139         92 RCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTPM-VALSRNVP----------  160 (266)
T ss_pred             HHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCccH-HHHHHHhC----------
Confidence               112222 33999999999999999999999999999999999873    454433221 11222222          


Q ss_pred             hhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHH--
Q 005581          525 YAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAI--  602 (690)
Q Consensus       525 ~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~--  602 (690)
                                                          ..|     ..+.+++|+.++++||+++||||++.+.++..+.  
T Consensus       161 ------------------------------------~~~-----A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~  199 (266)
T PRK08139        161 ------------------------------------RKQ-----AMEMLLTGEFIDAATAREWGLVNRVVPADALDAAVA  199 (266)
T ss_pred             ------------------------------------HHH-----HHHHHHcCCccCHHHHHHcCCccEeeChhHHHHHHH
Confidence                                                122     3455788999999999999999999987655554  


Q ss_pred             --HHHHcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchHH
Q 005581          603 --AKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQR  669 (690)
Q Consensus       603 --a~~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~~  669 (690)
                        +.+++..++.      .+...|..+..............+ .....++.+.+..+|+++++....+.|
T Consensus       200 ~~a~~la~~~~~------a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~  263 (266)
T PRK08139        200 RLAAVIAAKSPA------AVRIGKEAFYRQAEMPLADAYAYAGDVMAENMMAEDAEEGIDAFLEKRPPEW  263 (266)
T ss_pred             HHHHHHHhCCHH------HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence              4445554431      111111112111111000001111 122344556677899999988755543

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=99.74  E-value=1.3e-17  Score=174.37  Aligned_cols=218  Identities=21%  Similarity=0.197  Sum_probs=141.8

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh-----h---HH---
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS-----D---LM---  451 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as-----~---~i---  451 (690)
                      ++.|++|+++.+-..      |..+..+.++|.++++++.+|++||+|||+..    |.|++...-     +   ..   
T Consensus        10 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   83 (262)
T PRK07509         10 EDGIADVRLNRPDKM------NALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKR   83 (262)
T ss_pred             eCCEEEEEecCcccc------cCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhhh
Confidence            368999999987643      45566788999999999999999999999874    466654210     0   00   


Q ss_pred             --------HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCcee
Q 005581          452 --------WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKE  518 (690)
Q Consensus       452 --------~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~  518 (690)
                              .+.+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.++.    +|+++.......+..++|.   
T Consensus        84 ~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~---  160 (262)
T PRK07509         84 LPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRK---  160 (262)
T ss_pred             hHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhCH---
Confidence                    1111112 23999999999999999999999999999999998873    4544433322222222221   


Q ss_pred             eecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccC--h
Q 005581          519 IISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGG--F  596 (690)
Q Consensus       519 ~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~--~  596 (690)
                                                                 .+     ..+.+++|+.++|+||+++||||++.+  .
T Consensus       161 -------------------------------------------~~-----a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~  192 (262)
T PRK07509        161 -------------------------------------------DV-----ARELTYTARVFSAEEALELGLVTHVSDDPL  192 (262)
T ss_pred             -------------------------------------------HH-----HHHHHHcCCCcCHHHHHHcCChhhhhchHH
Confidence                                                       11     335567899999999999999999986  4


Q ss_pred             HHHHHHHHHHcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccch
Q 005581          597 SRAVAIAKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILF  667 (690)
Q Consensus       597 ~~ai~~a~~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~  667 (690)
                      +++.+.+++++..++..      +...|..+..............+ .....++.+.+..+|+.+++....+
T Consensus       193 ~~a~~~a~~l~~~~~~~------~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p  258 (262)
T PRK07509        193 AAALALAREIAQRSPDA------IAAAKRLINRSWTASVRALLARESVEQIRLLLGKNQKIAVKAQMKKRAP  258 (262)
T ss_pred             HHHHHHHHHHHhCCHHH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCC
Confidence            57778888888876521      11111112111111000111111 2224455666778899999876544

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=99.74  E-value=1.4e-17  Score=174.50  Aligned_cols=220  Identities=17%  Similarity=0.103  Sum_probs=138.0

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCC-ceEEEEEcc----CCCcchhhh-------------
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKR-YKAAIIRID----SPGGDALAS-------------  448 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~-VkaVVLrin----SpGG~~~as-------------  448 (690)
                      +++|++|+++.+-..      |..+..+.++|.+.++.+.+|++ ||+|||+..    |.|++....             
T Consensus        11 ~~~i~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~   84 (266)
T PRK05981         11 DGGVAILTLDHPEVM------NAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDA   84 (266)
T ss_pred             ECCEEEEEecCcccc------cCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccchh
Confidence            368999999987542      45566788999999999998765 999999975    456654320             


Q ss_pred             -hHH----HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceec----cccccccccchHHHHHHcCCcee
Q 005581          449 -DLM----WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFNKE  518 (690)
Q Consensus       449 -~~i----~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~G----SIGv~~~~~~~~~l~~klGi~~~  518 (690)
                       ..+    .+.+..+ .-+|||||.|+|.|.|||+.|+++||++||++++.++    .+|+++.......+.        
T Consensus        85 ~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~--------  156 (266)
T PRK05981         85 GAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLP--------  156 (266)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHH--------
Confidence             111    1122223 3399999999999999999999999999999999876    244443332221121        


Q ss_pred             eecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHH
Q 005581          519 IISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSR  598 (690)
Q Consensus       519 ~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~  598 (690)
                                                            +.|...+     ..+.+++|+.++|+||+++||||++...++
T Consensus       157 --------------------------------------~~vg~~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~  193 (266)
T PRK05981        157 --------------------------------------RLVGKAR-----AMELSLLGEKLPAETALQWGLVNRVVDDAE  193 (266)
T ss_pred             --------------------------------------HHhHHHH-----HHHHHHhCCCcCHHHHHHcCCceEeeCHhH
Confidence                                                  2222111     345578899999999999999999998776


Q ss_pred             HHHHHHHHc----CCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchHH
Q 005581          599 AVAIAKQKA----NIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQR  669 (690)
Q Consensus       599 ai~~a~~~a----~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~~  669 (690)
                      ..+.+.+++    ..++.      .+...|..+..............+ ......+.+.+..+|+++++....+.|
T Consensus       194 ~~~~a~~~a~~l~~~~~~------a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~  263 (266)
T PRK05981        194 LMAEAMKLAHELANGPTV------ALGLIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKRPAQF  263 (266)
T ss_pred             HHHHHHHHHHHHHcCCHH------HHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence            655555544    43321      111111111111111000111111 122334556677899999998765543

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=99.74  E-value=3.7e-17  Score=165.15  Aligned_cols=163  Identities=19%  Similarity=0.227  Sum_probs=134.4

Q ss_pred             EEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECc
Q 005581          391 AVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSD  470 (690)
Q Consensus       391 AvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g  470 (690)
                      .+|.+.|+|++           .+.+.+++.|..+...+..+.|+|+||||||++.++..|++.|+..  +.||++.+.|
T Consensus        36 r~I~l~g~I~~-----------~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~g~~I~d~i~~~--~~~v~t~~~G  102 (207)
T PRK12553         36 RIIFLGGQVDD-----------ASANDVMAQLLVLESIDPDRDITLYINSPGGSVTAGDAIYDTIQFI--RPDVQTVCTG  102 (207)
T ss_pred             eEEEEcceECH-----------HHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHHHHHHHHHhc--CCCcEEEEEe
Confidence            36899999984           4678999999999888778999999999999999999999999987  6799999999


Q ss_pred             cccHHHHHHHHhcC--eEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHH
Q 005581          471 VAASGGYYMAMAAG--TILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSA  548 (690)
Q Consensus       471 ~AaSGGy~iA~aaD--~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i  548 (690)
                      .|+|+|..|+++||  +++|.|+|.++........                ...|             +..+.+.-.+.+
T Consensus       103 ~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~----------------~~~G-------------~a~d~~~~~~~l  153 (207)
T PRK12553        103 QAASAGAVLLAAGTPGKRFALPNARILIHQPSLGG----------------GIRG-------------QASDLEIQAREI  153 (207)
T ss_pred             ehhhHHHHHHHcCCcCcEEECCCchhhhcCccccC----------------CCcc-------------CHHHHHHHHHHH
Confidence            99999999999999  5999999987754322000                0011             122333445567


Q ss_pred             HHHHHHHHHHHHhhcCCCHHHHHHHhc-CCcccHHHHHHcCCcccccC
Q 005581          549 QNAYKLFRDKAAFSRSMTVDKMEEYAQ-GRVWTGNDAASRGLVDALGG  595 (690)
Q Consensus       549 ~~~y~~F~~~Va~~R~~~~~~v~~l~~-Grv~tg~eA~e~GLVD~ig~  595 (690)
                      +++.+.|.+.+++.+|++.+.++++.. +.+|||+||+++||||+|..
T Consensus       154 ~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~  201 (207)
T PRK12553        154 LRMRERLERILAEHTGQSVEKIRKDTDRDKWLTAEEAKDYGLVDQIIT  201 (207)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHhcCccccHHHHHHcCCccEEcC
Confidence            788888999999999999999998765 99999999999999999864

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=99.74  E-value=1.7e-17  Score=173.08  Aligned_cols=219  Identities=20%  Similarity=0.183  Sum_probs=137.5

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh--------h---HH
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS--------D---LM  451 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as--------~---~i  451 (690)
                      ++.|++|+++.|-.      .|..+..+.++|.++|+++.+|+ +|+|||+.+    |.|++....        +   .+
T Consensus         6 ~~~v~~itlnrp~~------~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   78 (256)
T TIGR02280         6 EAGVARLTLNRPDK------LNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTI   78 (256)
T ss_pred             ECCEEEEEecCccc------ccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHH
Confidence            36899999998743      24556678999999999999999 999999875    355554210        0   11


Q ss_pred             ----HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecc
Q 005581          452 ----WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISR  522 (690)
Q Consensus       452 ----~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~  522 (690)
                          .+.++.+ .-+|||||.|+|.|.|||+.|+++||++||++.+.++.    +|+++.......+...+|        
T Consensus        79 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG--------  150 (256)
T TIGR02280        79 ETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVG--------  150 (256)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhC--------
Confidence                1112223 33999999999999999999999999999999998772    444433322222222222        


Q ss_pred             cchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHH
Q 005581          523 GKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAI  602 (690)
Q Consensus       523 g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~  602 (690)
                                                            ..|     ..+.+++|+.++|+||+++||||++.+.+++.+.
T Consensus       151 --------------------------------------~~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~  187 (256)
T TIGR02280       151 --------------------------------------RAR-----AMGLAMLGEKLDARTAASWGLIWQVVDDAALMDE  187 (256)
T ss_pred             --------------------------------------HHH-----HHHHHHcCCCCCHHHHHHcCCcceeeChHHHHHH
Confidence                                                  111     3455688999999999999999999987766555


Q ss_pred             HHH----HcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchHH
Q 005581          603 AKQ----KANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQR  669 (690)
Q Consensus       603 a~~----~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~~  669 (690)
                      +.+    ++..++.      .+...|..+..............+ .....++.+.+..+|+++++....+.|
T Consensus       188 a~~~a~~la~~~~~------~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~  253 (256)
T TIGR02280       188 AQALAVHLAAQPTR------GLALTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKRNPQF  253 (256)
T ss_pred             HHHHHHHHHhCCHH------HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCCCCCC
Confidence            544    4444431      000011111111110000001111 122445566677899999887665543

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=99.74  E-value=2.1e-17  Score=172.83  Aligned_cols=163  Identities=15%  Similarity=0.158  Sum_probs=116.5

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh---------h----
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS---------D----  449 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as---------~----  449 (690)
                      ++.|++|+++.+-..      |..+..+.++|.+.++++..|++||+|||+..    |.|++....         +    
T Consensus        11 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   84 (262)
T PRK05995         11 RGQVATVTLNRPDVR------NAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRAD   84 (262)
T ss_pred             eCCEEEEEEcCcccc------cCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhH
Confidence            368999999987542      45566788999999999999999999999875    456654210         0    


Q ss_pred             --HHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecc
Q 005581          450 --LMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISR  522 (690)
Q Consensus       450 --~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~  522 (690)
                        .+.+.+..+ ..+|||||.|+|.|.|||+.|+++||++||++.+.+|.    +|+++.... ..+.            
T Consensus        85 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~-~~l~------------  151 (262)
T PRK05995         85 ARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATIS-PYVI------------  151 (262)
T ss_pred             HHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchH-HHHH------------
Confidence              112223333 34999999999999999999999999999999998874    444332211 1121            


Q ss_pred             cchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHH
Q 005581          523 GKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAI  602 (690)
Q Consensus       523 g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~  602 (690)
                                                        .+|...|     ..+.+++|+.++|+||+++||||++.+.++..+.
T Consensus       152 ----------------------------------~~vg~~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~  192 (262)
T PRK05995        152 ----------------------------------RAMGERA-----ARRYFLTAERFDAAEALRLGLVHEVVPAEALDAK  192 (262)
T ss_pred             ----------------------------------HHhCHHH-----HHHHHHcCCccCHHHHHHcCCCCeecCHHHHHHH
Confidence                                              2222222     3355788999999999999999999987665555


Q ss_pred             HHHHc
Q 005581          603 AKQKA  607 (690)
Q Consensus       603 a~~~a  607 (690)
                      +.+++
T Consensus       193 a~~~a  197 (262)
T PRK05995        193 VDELL  197 (262)
T ss_pred             HHHHH
Confidence            44443

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=99.74  E-value=1.9e-17  Score=173.17  Aligned_cols=219  Identities=18%  Similarity=0.179  Sum_probs=137.4

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh--------h----H
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS--------D----L  450 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as--------~----~  450 (690)
                      ++.|++|+++.+-.      .|..+..+.++|.+.++++. |++||+|||+..    |.|++...-        .    .
T Consensus        11 ~~~v~~itlnrp~~------~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   83 (262)
T PRK08140         11 EAGVATLTLNRPDK------LNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGES   83 (262)
T ss_pred             ECCEEEEEecCCcc------cCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhHHH
Confidence            36899999998754      24556678899999999999 999999999875    456654210        0    1


Q ss_pred             H---HH-HHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeec
Q 005581          451 M---WR-EIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIIS  521 (690)
Q Consensus       451 i---~~-~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~  521 (690)
                      +   ++ .+..+ ..+|||||.|+|.|.|||+.|+++||++||++.+.++.    +|+++.......+..++|       
T Consensus        84 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG-------  156 (262)
T PRK08140         84 IETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVG-------  156 (262)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhC-------
Confidence            1   11 12223 34999999999999999999999999999999998762    444433322222222222       


Q ss_pred             ccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHH
Q 005581          522 RGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVA  601 (690)
Q Consensus       522 ~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~  601 (690)
                                                             ..|     ..+.+++|+.++++||+++||||++.+.+++.+
T Consensus       157 ---------------------------------------~~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~  192 (262)
T PRK08140        157 ---------------------------------------MAR-----ALGLALLGEKLSAEQAEQWGLIWRVVDDAALAD  192 (262)
T ss_pred             ---------------------------------------HHH-----HHHHHHcCCCcCHHHHHHcCCccEeeChHHHHH
Confidence                                                   111     335578899999999999999999998776555


Q ss_pred             HHHH----HcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchHH
Q 005581          602 IAKQ----KANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQR  669 (690)
Q Consensus       602 ~a~~----~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~~  669 (690)
                      .+.+    ++..++.      .+...|..+..............+ .....++.+.+..+|+++++....+.|
T Consensus       193 ~a~~~a~~ia~~~~~------a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~~  259 (262)
T PRK08140        193 EAQQLAAHLATQPTR------GLALIKQAMNASATNTLDAQLDLERDLQREAGRSADYAEGVSAFLEKRAPRF  259 (262)
T ss_pred             HHHHHHHHHHhCCHH------HHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence            5444    4444431      000111111111111000011111 122344556677888988887665543

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=99.73  E-value=1.7e-17  Score=173.34  Aligned_cols=216  Identities=17%  Similarity=0.163  Sum_probs=139.6

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh--------hH----
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS--------DL----  450 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as--------~~----  450 (690)
                      ++.|++|+++.+-..      |..+..+.++|.+.|+++.+|++||+|||+.+    |.|++....        +.    
T Consensus        10 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~   83 (260)
T PRK07511         10 EGSTLVLTLSNPGAR------NALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAAS   83 (260)
T ss_pred             ECCEEEEEECCcccc------cCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHH
Confidence            468999999997542      44566788999999999999999999999875    456654210        01    


Q ss_pred             ---HHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecc
Q 005581          451 ---MWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISR  522 (690)
Q Consensus       451 ---i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~  522 (690)
                         +.+.+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.++.    +|+++.......+..++|.       
T Consensus        84 ~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~-------  156 (260)
T PRK07511         84 IDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPR-------  156 (260)
T ss_pred             HHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCH-------
Confidence               11122222 23999999999999999999999999999999998873    4544433332222222221       


Q ss_pred             cchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHH
Q 005581          523 GKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAI  602 (690)
Q Consensus       523 g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~  602 (690)
                                                             .+     ..+.+++|+.++++||+++||||++.+.++.++.
T Consensus       157 ---------------------------------------~~-----a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~  192 (260)
T PRK07511        157 ---------------------------------------QL-----ATELLLEGKPISAERLHALGVVNRLAEPGQALAE  192 (260)
T ss_pred             ---------------------------------------HH-----HHHHHHhCCCCCHHHHHHcCCccEeeCchHHHHH
Confidence                                                   11     3355788999999999999999999877655555


Q ss_pred             HH----HHcCCCCCCceEEEEecCCCCCHHHHHhcc-ccc---hhcHH-HHHHHHHHhccCCcchhhhcCccchHH
Q 005581          603 AK----QKANIPEDRQVTLVEMSKPSPTLPEILSSV-GNS---IAGVD-RTLKELLQDLTFSDGVQARMDGILFQR  669 (690)
Q Consensus       603 a~----~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~---~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~~  669 (690)
                      +.    +++..++..      +.    ...+.+... ..+   ....+ .....++.+.+..+|+++++.+..+.|
T Consensus       193 a~~~a~~l~~~~~~~------~~----~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r~~~~  258 (260)
T PRK07511        193 ALALADQLAAGSPNA------LA----RIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAAFLEKRAPDY  258 (260)
T ss_pred             HHHHHHHHHhCCHHH------HH----HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhccCCCCC
Confidence            44    444443210      00    011222111 111   11111 122445566677888998888766554

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=99.73  E-value=2e-17  Score=173.69  Aligned_cols=164  Identities=17%  Similarity=0.176  Sum_probs=119.2

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-----CCCcchhhh-------h---HH
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALAS-------D---LM  451 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-----SpGG~~~as-------~---~i  451 (690)
                      .+.|++|+++.+-..      |..+..+.++|.+.++++.+|++||+|||+.+     |.|++...-       +   .+
T Consensus        18 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~   91 (269)
T PRK06127         18 TGGLGRITFNNPARH------NAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAY   91 (269)
T ss_pred             ECCEEEEEecCCCcc------CCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHH
Confidence            368999999987542      45667788999999999999999999999885     346654310       1   11


Q ss_pred             HH----HHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecc
Q 005581          452 WR----EIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISR  522 (690)
Q Consensus       452 ~~----~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~  522 (690)
                      .+    .+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.++.    +|+++.......+...+|        
T Consensus        92 ~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG--------  163 (269)
T PRK06127         92 EQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVG--------  163 (269)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhC--------
Confidence            11    12222 33999999999999999999999999999999998873    454444333322322222        


Q ss_pred             cchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHH
Q 005581          523 GKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAI  602 (690)
Q Consensus       523 g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~  602 (690)
                                                            ..|     ..+.+++|+.++++||+++||||++.+.+++.+.
T Consensus       164 --------------------------------------~~~-----a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~  200 (269)
T PRK06127        164 --------------------------------------PSA-----AKDLFYTARRFDAAEALRIGLVHRVTAADDLETA  200 (269)
T ss_pred             --------------------------------------HHH-----HHHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHH
Confidence                                                  111     3455788999999999999999999987776655


Q ss_pred             HHHHc
Q 005581          603 AKQKA  607 (690)
Q Consensus       603 a~~~a  607 (690)
                      +.+++
T Consensus       201 a~~~a  205 (269)
T PRK06127        201 LADYA  205 (269)
T ss_pred             HHHHH
Confidence            55544

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=99.73  E-value=1.4e-17  Score=175.83  Aligned_cols=225  Identities=14%  Similarity=0.163  Sum_probs=139.7

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc------CCCcchhh------h----hH
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID------SPGGDALA------S----DL  450 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin------SpGG~~~a------s----~~  450 (690)
                      .+.|++|+++.+ .      .|..+..+.++|.+.|+++.+|++||+|||+.+      |.|++...      +    ..
T Consensus        19 ~~~Va~itlnr~-~------~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~   91 (278)
T PLN03214         19 PGGIAVVWLAKE-P------VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAE   91 (278)
T ss_pred             CCCEEEEEECCC-C------CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHH
Confidence            367999999986 2      245566788999999999999999999999874      45555421      0    11


Q ss_pred             HHH----HHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccc-cccccchHHHHHHcCCceeee
Q 005581          451 MWR----EIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGV-VTGKFNLGKLYEKIGFNKEII  520 (690)
Q Consensus       451 i~~----~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv-~~~~~~~~~l~~klGi~~~~i  520 (690)
                      +++    .+..+ ..+|||||.|+|.|.|||+.|+++||++||++.+.+|.    +|+ ++.......+...+|      
T Consensus        92 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G------  165 (278)
T PLN03214         92 FWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVID------  165 (278)
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcC------
Confidence            211    12233 33999999999999999999999999999999998873    444 232222222222222      


Q ss_pred             cccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHH-HHHHHhcCCcccHHHHHHcCCcccccChHHH
Q 005581          521 SRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVD-KMEEYAQGRVWTGNDAASRGLVDALGGFSRA  599 (690)
Q Consensus       521 ~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~-~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~a  599 (690)
                                                                    .. ..+.+++|+.++++||+++||||++.+.++.
T Consensus       166 ----------------------------------------------~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l  199 (278)
T PLN03214        166 ----------------------------------------------RKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAAL  199 (278)
T ss_pred             ----------------------------------------------HHHHHHHHHcCCccCHHHHHHcCCCcEecChHHH
Confidence                                                          22 3455788999999999999999999887665


Q ss_pred             HHH----HHHHcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchHHHhhcc
Q 005581          600 VAI----AKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQRLEEVA  674 (690)
Q Consensus       600 i~~----a~~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~~~~~~~  674 (690)
                      .+.    +.++++.++.      .+...|..+...+..........+ ......+.+.+..+|+++++.++....=   .
T Consensus       200 ~~~a~~~a~~l~~~~~~------a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~aflek~~~~~~---~  270 (278)
T PLN03214        200 MEAAASAMERALKLPSA------ARAATKALLREEFSAAWEAYYEEEAKGGWKMLSEPSIIKALGGVMERLSSGKE---K  270 (278)
T ss_pred             HHHHHHHHHHHHcCCHH------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccc---c
Confidence            554    4445554431      111011111111110000011111 1112344566778999999986643322   3


Q ss_pred             cCCch
Q 005581          675 CGNPI  679 (690)
Q Consensus       675 ~~~~~  679 (690)
                      .+||.
T Consensus       271 ~~~~~  275 (278)
T PLN03214        271 KQNPA  275 (278)
T ss_pred             ccCcc
Confidence            45554

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=99.73  E-value=3.3e-17  Score=170.11  Aligned_cols=218  Identities=14%  Similarity=0.115  Sum_probs=139.9

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh-----hH----HHH
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS-----DL----MWR  453 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as-----~~----i~~  453 (690)
                      ++.|++|+++.+-..      |..+..+.++|.++++++..|++||+|||+..    |.|++....     ..    +.+
T Consensus         7 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   80 (248)
T PRK06072          7 REGYAIVTMSRPDKL------NALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYP   80 (248)
T ss_pred             ECCEEEEEECCcccc------cCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHH
Confidence            368999999987642      45566788999999999999999999999874    466665321     11    112


Q ss_pred             HHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccchhhh
Q 005581          454 EIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKYAEV  528 (690)
Q Consensus       454 ~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~  528 (690)
                      .+..+ ..+|||||.|+|.|+|||+.|+++||++||++.+.++.    +|+++......                     
T Consensus        81 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~---------------------  139 (248)
T PRK06072         81 IIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAY---------------------  139 (248)
T ss_pred             HHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHH---------------------
Confidence            22223 23899999999999999999999999999999998762    33332211110                     


Q ss_pred             hhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccC-hHHHHHHHHHHc
Q 005581          529 LAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGG-FSRAVAIAKQKA  607 (690)
Q Consensus       529 ~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~-~~~ai~~a~~~a  607 (690)
                                               .+...+.      ....+.+++|+.++|+||+++||||++.. .+++.+.|.+++
T Consensus       140 -------------------------~l~~~~g------~~a~~lll~g~~~~a~eA~~~Glv~~~~~~~~~a~~~a~~la  188 (248)
T PRK06072        140 -------------------------FLLKLTG------QRFYEILVLGGEFTAEEAERWGLLKISEDPLSDAEEMANRIS  188 (248)
T ss_pred             -------------------------HHHHHhh------HHHHHHHHhCCccCHHHHHHCCCccccchHHHHHHHHHHHHH
Confidence                                     0111111      22445678899999999999999997643 457778888888


Q ss_pred             CCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchH
Q 005581          608 NIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQ  668 (690)
Q Consensus       608 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~  668 (690)
                      ..|+.      .+...|..+..............+ .....++.+.+..+|+++++....+.
T Consensus       189 ~~~~~------a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~  244 (248)
T PRK06072        189 NGPFQ------SYIAAKRMINLVLYNDLEEFLEYESAIQGYLGKTEDFKEGISSFKEKREPK  244 (248)
T ss_pred             hCCHH------HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCC
Confidence            76642      111112222211111110111111 12234555667788999988765544

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=99.73  E-value=3.1e-17  Score=171.03  Aligned_cols=161  Identities=19%  Similarity=0.194  Sum_probs=116.2

Q ss_pred             CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh------------hHH
Q 005581          388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS------------DLM  451 (690)
Q Consensus       388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as------------~~i  451 (690)
                      +.|++|+++.+-.      .|..+..+.++|.+.++++.  ++||+|||+.+    |.|++....            ..+
T Consensus        10 ~~v~~itlnrp~~------~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   81 (255)
T PRK08150         10 GGVATIGLNRPAK------RNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRW   81 (255)
T ss_pred             CCEEEEEEcCCcc------ccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHH
Confidence            6799999998754      24556678899999999886  78999999985    456665320            111


Q ss_pred             HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccchh
Q 005581          452 WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKYA  526 (690)
Q Consensus       452 ~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~~  526 (690)
                      .+.+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.+|.    +|+++.......+..++|.           
T Consensus        82 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~-----------  150 (255)
T PRK08150         82 HRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGV-----------  150 (255)
T ss_pred             HHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCH-----------
Confidence            2223333 23999999999999999999999999999999999883    5555444333333333332           


Q ss_pred             hhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHHHH
Q 005581          527 EVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQK  606 (690)
Q Consensus       527 ~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~~~  606 (690)
                                                         .     ...+.+++|+.++|+||+++||||++...++.++.+.++
T Consensus       151 -----------------------------------~-----~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~  190 (255)
T PRK08150        151 -----------------------------------A-----RMTDMMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMEL  190 (255)
T ss_pred             -----------------------------------H-----HHHHHHHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHH
Confidence                                               1     134557889999999999999999999866655554444


Q ss_pred             c
Q 005581          607 A  607 (690)
Q Consensus       607 a  607 (690)
                      +
T Consensus       191 a  191 (255)
T PRK08150        191 A  191 (255)
T ss_pred             H
Confidence            3

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=99.73  E-value=3.3e-17  Score=170.37  Aligned_cols=167  Identities=15%  Similarity=0.141  Sum_probs=118.3

Q ss_pred             CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh-----------hHHH
Q 005581          388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS-----------DLMW  452 (690)
Q Consensus       388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as-----------~~i~  452 (690)
                      +.|++|+++.+-.      .|..+..+.++|.+.++++.+|++||+|||+.+    |.|++...-           ..+.
T Consensus        14 ~~v~~itlnrp~~------~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~   87 (251)
T PRK06023         14 PGVQVIRFNRPEK------KNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEIL   87 (251)
T ss_pred             CcEEEEEecCccc------ccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHH
Confidence            3599999998754      245566788999999999999999999999875    466664210           1122


Q ss_pred             HHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccchhh
Q 005581          453 REIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKYAE  527 (690)
Q Consensus       453 ~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~~~  527 (690)
                      +.+..+ ..+|||||+|+|.|.|||+.|+++||++||++.+.++.    +|+++.......+                  
T Consensus        88 ~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l------------------  149 (251)
T PRK06023         88 DFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLA------------------  149 (251)
T ss_pred             HHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHH------------------
Confidence            223333 34999999999999999999999999999999999873    4443332211111                  


Q ss_pred             hhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHH----HH
Q 005581          528 VLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVA----IA  603 (690)
Q Consensus       528 ~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~----~a  603 (690)
                                                  ...+...|     ..+.+++|+.++++||+++||||++.+.+++.+    .|
T Consensus       150 ----------------------------~~~~g~~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a  196 (251)
T PRK06023        150 ----------------------------PRLMGHQR-----AFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAA  196 (251)
T ss_pred             ----------------------------HHHHhHHH-----HHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHH
Confidence                                        11111111     345567899999999999999999998765544    45


Q ss_pred             HHHcCCCC
Q 005581          604 KQKANIPE  611 (690)
Q Consensus       604 ~~~a~l~~  611 (690)
                      .+++..++
T Consensus       197 ~~l~~~~~  204 (251)
T PRK06023        197 EELAAKPP  204 (251)
T ss_pred             HHHHhCCH
Confidence            55555543

>PRK05869 enoyl-CoA hydratase; Validated

Probab=99.73  E-value=1.3e-16  Score=163.09  Aligned_cols=164  Identities=18%  Similarity=0.211  Sum_probs=121.4

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh--------hHHH--
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS--------DLMW--  452 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as--------~~i~--  452 (690)
                      ++.|++|+++.+-.       |..+..+.++|.+.++++.+|++||+|||+..    |.|++....        ..+.  
T Consensus        15 ~~~i~~itlnrp~~-------Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~   87 (222)
T PRK05869         15 DAGLATLLLSRPPT-------NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAARV   87 (222)
T ss_pred             cCCEEEEEECCCCC-------CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhhHHHHHHH
Confidence            47899999998732       45566788999999999999999999999874    456654321        0111  


Q ss_pred             --HHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccch
Q 005581          453 --REIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKY  525 (690)
Q Consensus       453 --~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~  525 (690)
                        +.+.++ .-+|||||.++|+|.|||+.|+++||++||.+.+.+|.    +|+++.......+..++|.          
T Consensus        88 ~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~----------  157 (222)
T PRK05869         88 RQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGP----------  157 (222)
T ss_pred             HHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCH----------
Confidence              122223 33999999999999999999999999999999998873    5555544433333333332          


Q ss_pred             hhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHHH
Q 005581          526 AEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQ  605 (690)
Q Consensus       526 ~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~~  605 (690)
                                                          .     ...+.+++|+.++|+||+++||||++.+.+++.+.+.+
T Consensus       158 ------------------------------------~-----~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~  196 (222)
T PRK05869        158 ------------------------------------S-----RAKELVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAA  196 (222)
T ss_pred             ------------------------------------H-----HHHHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHH
Confidence                                                1     13455788999999999999999999988877777766


Q ss_pred             HcC
Q 005581          606 KAN  608 (690)
Q Consensus       606 ~a~  608 (690)
                      ++.
T Consensus       197 ~a~  199 (222)
T PRK05869        197 WAR  199 (222)
T ss_pred             HHH
Confidence            654

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=99.72  E-value=3.1e-17  Score=172.70  Aligned_cols=164  Identities=20%  Similarity=0.261  Sum_probs=116.6

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-----CCCcchhhh--------h----
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALAS--------D----  449 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-----SpGG~~~as--------~----  449 (690)
                      ++.|++|+++.+-..      |..+..+.++|.+.++++..|++||+|||+.+     |.|++....        +    
T Consensus        20 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~   93 (273)
T PRK07396         20 ADGIAKITINRPEVR------NAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPR   93 (273)
T ss_pred             cCCEEEEEEcCCccc------CCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhh
Confidence            468999999987542      45566788999999999999999999999874     356654210        0    


Q ss_pred             -HHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeeccc
Q 005581          450 -LMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRG  523 (690)
Q Consensus       450 -~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g  523 (690)
                       ...+.++.+ .-+|||||.|+|.|.|||+.|+++||++||++.+.+|.    +|+++.......+.             
T Consensus        94 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~-------------  160 (273)
T PRK07396         94 LNVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLA-------------  160 (273)
T ss_pred             hHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHH-------------
Confidence             011112222 34999999999999999999999999999999998874    34333322222222             


Q ss_pred             chhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHH
Q 005581          524 KYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIA  603 (690)
Q Consensus       524 ~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a  603 (690)
                                                       ..|...|     ..+.+++|+.++++||+++||||++.+.+++.+.+
T Consensus       161 ---------------------------------~~vG~~~-----a~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a  202 (273)
T PRK07396        161 ---------------------------------RIVGQKK-----AREIWFLCRQYDAQEALDMGLVNTVVPLADLEKET  202 (273)
T ss_pred             ---------------------------------HHhhHHH-----HHHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHH
Confidence                                             2222222     34557889999999999999999999877665554


Q ss_pred             HHHc
Q 005581          604 KQKA  607 (690)
Q Consensus       604 ~~~a  607 (690)
                      .+++
T Consensus       203 ~~~a  206 (273)
T PRK07396        203 VRWC  206 (273)
T ss_pred             HHHH
Confidence            4433

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=99.72  E-value=3.7e-17  Score=171.11  Aligned_cols=162  Identities=17%  Similarity=0.161  Sum_probs=116.7

Q ss_pred             CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh------hH----HH-
Q 005581          388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS------DL----MW-  452 (690)
Q Consensus       388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as------~~----i~-  452 (690)
                      +.|++|+++.+-..      |..+..+.++|.++++++..|++||+|||+.+    |.|++....      +.    .+ 
T Consensus        13 ~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   86 (263)
T PRK07799         13 GHTLIVTMNRPEAR------NALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYD   86 (263)
T ss_pred             CCEEEEEECCCccc------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhhhhh
Confidence            68999999987542      45667789999999999999999999999875    466655310      00    01 


Q ss_pred             ----HHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeeccc
Q 005581          453 ----REIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRG  523 (690)
Q Consensus       453 ----~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g  523 (690)
                          +.+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.+|.    +|+++.......+...+|.        
T Consensus        87 ~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~--------  158 (263)
T PRK07799         87 PSRIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPY--------  158 (263)
T ss_pred             hhHHHHHHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCH--------
Confidence                111112 34999999999999999999999999999999998873    5554433322222222221        


Q ss_pred             chhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHH
Q 005581          524 KYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIA  603 (690)
Q Consensus       524 ~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a  603 (690)
                                                            .+     ..+.+++|+.++++||+++||||++.+.++..+.+
T Consensus       159 --------------------------------------~~-----a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a  195 (263)
T PRK07799        159 --------------------------------------TV-----ACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKA  195 (263)
T ss_pred             --------------------------------------HH-----HHHHHHcCCCCCHHHHHHcCCccEecCcchHHHHH
Confidence                                                  11     34557889999999999999999998766554444


Q ss_pred             HHH
Q 005581          604 KQK  606 (690)
Q Consensus       604 ~~~  606 (690)
                      .++
T Consensus       196 ~~~  198 (263)
T PRK07799        196 LEL  198 (263)
T ss_pred             HHH
Confidence            443

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=99.72  E-value=4.6e-17  Score=169.89  Aligned_cols=220  Identities=15%  Similarity=0.112  Sum_probs=136.2

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh-------hHH----
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS-------DLM----  451 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as-------~~i----  451 (690)
                      ++.|++|++++|-.       |..+..+.++|.++++++.+|++||+|||+.+    |.|++....       +..    
T Consensus        11 ~~~v~~itlnrp~~-------Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~   83 (257)
T PRK06495         11 SDHVAVVTLDNPPV-------NALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHN   83 (257)
T ss_pred             eCCEEEEEECCCcc-------ccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHH
Confidence            36799999999831       45566788999999999999999999999875    456655321       011    


Q ss_pred             ---HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeecccchhh
Q 005581          452 ---WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAE  527 (690)
Q Consensus       452 ---~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~  527 (690)
                         .+.+..+ ..+|||||.|+|.|.|||+.|+++||++||++.+.+|..-            -++|+.      |..  
T Consensus        84 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe------------~~~Gl~------~~~--  143 (257)
T PRK06495         84 RRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPE------------IDVGLA------GGG--  143 (257)
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChh------------hccCcc------ccH--
Confidence               1122223 3399999999999999999999999999999999877311            122221      000  


Q ss_pred             hhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHH----HH
Q 005581          528 VLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVA----IA  603 (690)
Q Consensus       528 ~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~----~a  603 (690)
                                               ..+...|...|     ..+.+++|+.++++||+++||||++.+.++..+    .+
T Consensus       144 -------------------------~~l~~~~g~~~-----a~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a  193 (257)
T PRK06495        144 -------------------------KHAMRLFGHSL-----TRRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIA  193 (257)
T ss_pred             -------------------------HHHHHHhCHHH-----HHHHHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHH
Confidence                                     00111122121     345578899999999999999999998765544    45


Q ss_pred             HHHcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchHH
Q 005581          604 KQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQR  669 (690)
Q Consensus       604 ~~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~~  669 (690)
                      .+++..++.      .+...|..+..............+ ......+.+.+..+|+.+++....+.|
T Consensus       194 ~~l~~~~~~------a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr~p~~  254 (257)
T PRK06495        194 REIASKSPL------ATRLAKDALNTIENMSLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKRPPVF  254 (257)
T ss_pred             HHHHhCCHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhccCCCCC
Confidence            555555432      000111111111110000011111 122334555667789999888765553

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=99.72  E-value=4.7e-17  Score=169.61  Aligned_cols=163  Identities=20%  Similarity=0.197  Sum_probs=116.2

Q ss_pred             CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh---------h---HH
Q 005581          388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS---------D---LM  451 (690)
Q Consensus       388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as---------~---~i  451 (690)
                      +.|++|+++++-..      |..+..+.++|.+.++++..|+++|+|||+.+    |.|++....         .   .+
T Consensus        10 ~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   83 (255)
T PRK07260         10 DDLATLTLNRPEVS------NGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLVKI   83 (255)
T ss_pred             CCEEEEEeCCcccc------cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhHHHH
Confidence            67999999987542      45566788999999999999999999999875    456665310         0   01


Q ss_pred             ----HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecc
Q 005581          452 ----WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISR  522 (690)
Q Consensus       452 ----~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~  522 (690)
                          .+.+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.++.    +|+++.......+..++|        
T Consensus        84 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg--------  155 (255)
T PRK07260         84 AELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIG--------  155 (255)
T ss_pred             HHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhC--------
Confidence                1111222 23999999999999999999999999999999998773    444443322222221222        


Q ss_pred             cchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHH
Q 005581          523 GKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAI  602 (690)
Q Consensus       523 g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~  602 (690)
                                                            ..|     ..+.+++|+.++|+||+++||||++.+.++..+.
T Consensus       156 --------------------------------------~~~-----a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~  192 (255)
T PRK07260        156 --------------------------------------LNR-----ATHLAMTGEALTAEKALEYGFVYRVAESEKLEKT  192 (255)
T ss_pred             --------------------------------------HHH-----HHHHHHhCCccCHHHHHHcCCcceecCHhHHHHH
Confidence                                                  111     3455788999999999999999999987765555


Q ss_pred             HHHHc
Q 005581          603 AKQKA  607 (690)
Q Consensus       603 a~~~a  607 (690)
                      +.+++
T Consensus       193 a~~~a  197 (255)
T PRK07260        193 CEQLL  197 (255)
T ss_pred             HHHHH
Confidence            44433

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=99.72  E-value=3.2e-17  Score=170.34  Aligned_cols=167  Identities=19%  Similarity=0.226  Sum_probs=118.0

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh------------hH
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS------------DL  450 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as------------~~  450 (690)
                      .+.|++|+++.+-..      |..+..+.++|.+.++++.+|++||+|||+..    |.|++...-            ..
T Consensus        10 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   83 (249)
T PRK05870         10 DDGVALITVNDPDRR------NAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRR   83 (249)
T ss_pred             cCCEEEEEEcCCCcc------CCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccchHHHHHH
Confidence            368999999986542      45566788999999999999999999999875    456654210            01


Q ss_pred             HHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccch
Q 005581          451 MWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKY  525 (690)
Q Consensus       451 i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~  525 (690)
                      +.+.+..+ .-+|||||.++|.|.|||+.|+++||++||++.+.++.    +|+++.......+.+.+            
T Consensus        84 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~------------  151 (249)
T PRK05870         84 IYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAV------------  151 (249)
T ss_pred             HHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhh------------
Confidence            12222233 34999999999999999999999999999999998773    45444332221121111            


Q ss_pred             hhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHH-HHHHHhcCCcccHHHHHHcCCcccccC--hHHHHHH
Q 005581          526 AEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVD-KMEEYAQGRVWTGNDAASRGLVDALGG--FSRAVAI  602 (690)
Q Consensus       526 ~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~-~v~~l~~Grv~tg~eA~e~GLVD~ig~--~~~ai~~  602 (690)
                                                              ... ..+.+++|+.++++||+++||||++.+  .+++.+.
T Consensus       152 ----------------------------------------G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~l~~~a~~~  191 (249)
T PRK05870        152 ----------------------------------------GPQVARAALLFGMRFDAEAAVRHGLALMVADDPVAAALEL  191 (249)
T ss_pred             ----------------------------------------CHHHHHHHHHhCCccCHHHHHHcCCHHHHHhhHHHHHHHH
Confidence                                                    222 345567899999999999999999982  1245555


Q ss_pred             HHHHcCCCC
Q 005581          603 AKQKANIPE  611 (690)
Q Consensus       603 a~~~a~l~~  611 (690)
                      |.+++..++
T Consensus       192 a~~la~~~~  200 (249)
T PRK05870        192 AAGPAAAPR  200 (249)
T ss_pred             HHHHHhCCH
Confidence            666666554

>PLN02921 naphthoate synthase

Probab=99.72  E-value=4.7e-17  Score=175.13  Aligned_cols=219  Identities=16%  Similarity=0.174  Sum_probs=139.0

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-----CCCcchhhh--------hHH--
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALAS--------DLM--  451 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-----SpGG~~~as--------~~i--  451 (690)
                      ++.|++|+++.+-.      .|..+..+.++|.++++++..|++|++|||+..     |.|++....        +..  
T Consensus        74 ~~~Va~ItLnrP~~------~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~  147 (327)
T PLN02921         74 GEGIAKITINRPER------RNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGR  147 (327)
T ss_pred             CCCEEEEEECCCCC------CCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHH
Confidence            37899999998754      245566788999999999999999999999874     456654210        000  


Q ss_pred             ---HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeeccc
Q 005581          452 ---WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRG  523 (690)
Q Consensus       452 ---~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g  523 (690)
                         .+.+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.+|.    +|+++.......+...+|         
T Consensus       148 ~~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG---------  218 (327)
T PLN02921        148 LNVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVG---------  218 (327)
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhC---------
Confidence               1112222 23999999999999999999999999999999999874    343333222222222222         


Q ss_pred             chhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHH
Q 005581          524 KYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIA  603 (690)
Q Consensus       524 ~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a  603 (690)
                                                           ..|     ..+.+++|+.++|+||+++||||++...+++.+.+
T Consensus       219 -------------------------------------~~~-----A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~~a  256 (327)
T PLN02921        219 -------------------------------------QKK-----AREMWFLARFYTASEALKMGLVNTVVPLDELEGET  256 (327)
T ss_pred             -------------------------------------HHH-----HHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHHHH
Confidence                                                 111     33556889999999999999999999877665554


Q ss_pred             H----HHcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchHH
Q 005581          604 K----QKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQR  669 (690)
Q Consensus       604 ~----~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~~  669 (690)
                      .    +++..++.      .+...|..+...... .......+ .....++.+.+..+|++|++.+..+.|
T Consensus       257 ~~~a~~la~~~p~------al~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~f  320 (327)
T PLN02921        257 VKWCREILRNSPT------AIRVLKSALNAADDG-HAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPDF  320 (327)
T ss_pred             HHHHHHHHccCHH------HHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence            4    44454431      000011111111111 00111111 122334556677899999998766554

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=99.72  E-value=1.5e-16  Score=166.16  Aligned_cols=164  Identities=18%  Similarity=0.227  Sum_probs=117.9

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh----------hHHH
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS----------DLMW  452 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as----------~~i~  452 (690)
                      .+.|++|+++.+-.      .|..+..+.++|.+.|+++..|++||+|||+..    |.|+++...          ..+.
T Consensus        11 ~~~va~Itlnrp~~------~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~   84 (258)
T PRK06190         11 HDRVRTLTLNRPEA------RNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALP   84 (258)
T ss_pred             eCCEEEEEEcCCcc------cCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHH
Confidence            36899999998754      245566788999999999999999999999875    466665320          0111


Q ss_pred             HHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccchhh
Q 005581          453 REIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKYAE  527 (690)
Q Consensus       453 ~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~~~  527 (690)
                      +.+..+ ..+|||||.|+|.|.|||+.|+++||++||++.+.++.    +|+++.......+..++|.            
T Consensus        85 ~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~------------  152 (258)
T PRK06190         85 NPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGI------------  152 (258)
T ss_pred             HHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCH------------
Confidence            222223 23999999999999999999999999999999998873    4544443222222222221            


Q ss_pred             hhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHHHHc
Q 005581          528 VLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKA  607 (690)
Q Consensus       528 ~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~~~a  607 (690)
                                                        .     ...+.+++|+.++|+||+++||||++.+.++..+.+.+++
T Consensus       153 ----------------------------------~-----~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a  193 (258)
T PRK06190        153 ----------------------------------G-----RARRMSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLA  193 (258)
T ss_pred             ----------------------------------H-----HHHHHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHH
Confidence                                              1     1345568899999999999999999998766555554443

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=99.72  E-value=4.8e-17  Score=171.10  Aligned_cols=162  Identities=15%  Similarity=0.144  Sum_probs=117.4

Q ss_pred             cEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh------h--------H
Q 005581          389 QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS------D--------L  450 (690)
Q Consensus       389 ~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as------~--------~  450 (690)
                      .|++|+++.+-.      .|..+..+.++|.+.|+++..|++||+|||+.+    |.|+++...      +        .
T Consensus        15 ~v~~itlnrp~~------~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~   88 (272)
T PRK06210         15 GVAVITLNRPDR------LNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRP   88 (272)
T ss_pred             CEEEEEeCCccc------ccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccccccccchh
Confidence            899999998754      245566788999999999999999999999875    456654310      0        0


Q ss_pred             H--------HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceec----cccccccccchHHHHHHcCCce
Q 005581          451 M--------WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFNK  517 (690)
Q Consensus       451 i--------~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~G----SIGv~~~~~~~~~l~~klGi~~  517 (690)
                      +        .+.+..+ ..+|||||.|+|.|.|||+.|+++||++||++.+.++    .+|+++.......+...+|   
T Consensus        89 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig---  165 (272)
T PRK06210         89 FVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVG---  165 (272)
T ss_pred             hhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHhhhC---
Confidence            1        1112223 3499999999999999999999999999999999887    3555444322222211111   


Q ss_pred             eeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHH-HHHHHhcCCcccHHHHHHcCCcccccCh
Q 005581          518 EIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVD-KMEEYAQGRVWTGNDAASRGLVDALGGF  596 (690)
Q Consensus       518 ~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~-~v~~l~~Grv~tg~eA~e~GLVD~ig~~  596 (690)
                                                                       .. ..+.+++|+.|+|+||+++||||++.+.
T Consensus       166 -------------------------------------------------~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~  196 (272)
T PRK06210        166 -------------------------------------------------HANALDLLLSARTFYAEEALRLGLVNRVVPP  196 (272)
T ss_pred             -------------------------------------------------HHHHHHHHHcCCccCHHHHHHcCCcceecCH
Confidence                                                             22 3455788999999999999999999987


Q ss_pred             HHHHHHHHHHcC
Q 005581          597 SRAVAIAKQKAN  608 (690)
Q Consensus       597 ~~ai~~a~~~a~  608 (690)
                      +++.+.+.+++.
T Consensus       197 ~~l~~~a~~~a~  208 (272)
T PRK06210        197 DELMERTLAYAE  208 (272)
T ss_pred             HHHHHHHHHHHH
Confidence            776666555543

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=99.72  E-value=5.6e-17  Score=168.71  Aligned_cols=217  Identities=17%  Similarity=0.202  Sum_probs=138.3

Q ss_pred             CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh-----hHH----HHH
Q 005581          388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS-----DLM----WRE  454 (690)
Q Consensus       388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as-----~~i----~~~  454 (690)
                      +.|++|+++++ .      .|..+..+.++|.+.+.++.+|+++|+|||+.+    |.|++....     ...    .+.
T Consensus         9 ~~v~~itlnrp-~------~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~   81 (251)
T TIGR03189         9 GKLLRLRLARP-K------ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKL   81 (251)
T ss_pred             CCEEEEEeCCC-C------cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHH
Confidence            57999999998 2      145566788999999999999999999999875    466664320     011    122


Q ss_pred             HHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccchhhhh
Q 005581          455 IRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVL  529 (690)
Q Consensus       455 I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~  529 (690)
                      +..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.+|.    +|+++.. ....+..++|               
T Consensus        82 ~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~-~~~~l~~~vg---------------  145 (251)
T TIGR03189        82 VIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPA-ASCLLPERMG---------------  145 (251)
T ss_pred             HHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCc-hHHHHHHHhC---------------
Confidence            2223 33999999999999999999999999999999998874    4544321 1111222222               


Q ss_pred             hccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChH--HHHHH-HHHH
Q 005581          530 AAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFS--RAVAI-AKQK  606 (690)
Q Consensus       530 ~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~--~ai~~-a~~~  606 (690)
                                                     ..+     ..+.+++|+.++++||+++||||++.+..  ++++. ++++
T Consensus       146 -------------------------------~~~-----a~~l~ltg~~~~a~eA~~~Glv~~v~~~~~~~a~~~~a~~l  189 (251)
T TIGR03189       146 -------------------------------RVA-----AEDLLYSGRSIDGAEGARIGLANAVAEDPENAALAWFDEHP  189 (251)
T ss_pred             -------------------------------HHH-----HHHHHHcCCCCCHHHHHHCCCcceecCcHHHHHHHHHHHHH
Confidence                                           111     34557889999999999999999997632  44554 4667


Q ss_pred             cCCCCCCceEEEEecCCCCCHHHHHhccccc-hhcHH-HHHHHHHHhccCCcchhhhcCccchHH
Q 005581          607 ANIPEDRQVTLVEMSKPSPTLPEILSSVGNS-IAGVD-RTLKELLQDLTFSDGVQARMDGILFQR  669 (690)
Q Consensus       607 a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~~  669 (690)
                      +..++.      .+...|..+.......... ....+ .....++.+.+..+|+++++....+.|
T Consensus       190 a~~~p~------a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~  248 (251)
T TIGR03189       190 AKLSAS------SLRFAVRAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLEKRPALW  248 (251)
T ss_pred             HhCCHH------HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcCCCCC
Confidence            776642      1111111111111110000 00011 122344556677899999988665543

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=99.72  E-value=1.8e-16  Score=165.35  Aligned_cols=218  Identities=19%  Similarity=0.203  Sum_probs=137.8

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-----CCCcchhhh-------h----H
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALAS-------D----L  450 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-----SpGG~~~as-------~----~  450 (690)
                      ++.|++|+++.+-.      .|..+..+.++|.+.++++..|++||+|||+.+     |.|++....       .    .
T Consensus         9 ~~~v~~itlnrp~~------~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~   82 (256)
T TIGR03210         9 RNGIAWIMINRPAK------MNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLP   82 (256)
T ss_pred             eCCEEEEEEcCCcc------ccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHH
Confidence            36899999998754      245566788999999999999999999999874     456665321       0    1


Q ss_pred             HHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccch
Q 005581          451 MWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKY  525 (690)
Q Consensus       451 i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~  525 (690)
                      +.+.+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.+|.    +|+++.......+...+|           
T Consensus        83 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG-----------  151 (256)
T TIGR03210        83 MEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVG-----------  151 (256)
T ss_pred             HHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhC-----------
Confidence            11122223 23999999999999999999999999999999999874    443322222222222222           


Q ss_pred             hhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHH--
Q 005581          526 AEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIA--  603 (690)
Q Consensus       526 ~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a--  603 (690)
                                                         ..|     ..+.+++|+.++|+||+++||||++.+.+++.+.+  
T Consensus       152 -----------------------------------~~~-----A~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~  191 (256)
T TIGR03210       152 -----------------------------------EKK-----AREIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQK  191 (256)
T ss_pred             -----------------------------------HHH-----HHHHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHH
Confidence                                               111     34557789999999999999999999877555544  


Q ss_pred             --HHHcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchH
Q 005581          604 --KQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQ  668 (690)
Q Consensus       604 --~~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~  668 (690)
                        ++++..++.      .+...|..+..... ........+ .....++.+.+..+|+.+++....+.
T Consensus       192 ~a~~ia~~~~~------a~~~~K~~l~~~~~-~~~~~~~~~~~~~~~~~~~~d~~e~~~af~~kr~p~  252 (256)
T TIGR03210       192 WCDEIVEKSPT------AIAIAKRSFNMDTA-HQRGIAGMGMYALKLYYDTAESREGVKAFQEKRKPE  252 (256)
T ss_pred             HHHHHHhCCHH------HHHHHHHHHHHhhc-ccchHHHHHHHHHHHHccChhHHHHHHHHhccCCCC
Confidence              455554431      01111111111110 000011111 12233455566778888888765544

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=99.72  E-value=4.6e-17  Score=170.69  Aligned_cols=162  Identities=13%  Similarity=0.057  Sum_probs=116.0

Q ss_pred             CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh---------------
Q 005581          388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS---------------  448 (690)
Q Consensus       388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as---------------  448 (690)
                      +.|++|+++.+-..      |..+..+.++|.++++++..|++||+|||+.+    |.|++....               
T Consensus        14 ~~v~~itlnrp~~~------Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   87 (265)
T PRK05674         14 RGFATLWLSRADKN------NAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDA   87 (265)
T ss_pred             CCEEEEEecCcccc------cCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHH
Confidence            57999999987542      45566788999999999999999999999875    466654310               


Q ss_pred             hHHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeeccc
Q 005581          449 DLMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRG  523 (690)
Q Consensus       449 ~~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g  523 (690)
                      ..+.+.+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.+|.    +|+++.... ..+.             
T Consensus        88 ~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~-~~l~-------------  153 (265)
T PRK05674         88 RELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVIS-PFVV-------------  153 (265)
T ss_pred             HHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhH-HHHH-------------
Confidence            0112222333 33999999999999999999999999999999998873    444332211 1122             


Q ss_pred             chhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHH
Q 005581          524 KYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIA  603 (690)
Q Consensus       524 ~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a  603 (690)
                                                       .+|...|     ..+.+++|+.++|+||+++||||++.+.+++.+.+
T Consensus       154 ---------------------------------~~vG~~~-----a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a  195 (265)
T PRK05674        154 ---------------------------------KAIGERA-----ARRYALTAERFDGRRARELGLLAESYPAAELEAQV  195 (265)
T ss_pred             ---------------------------------HHhCHHH-----HHHHHHhCcccCHHHHHHCCCcceecCHHHHHHHH
Confidence                                             2222222     34557889999999999999999999877655544


Q ss_pred             HHHc
Q 005581          604 KQKA  607 (690)
Q Consensus       604 ~~~a  607 (690)
                      .+++
T Consensus       196 ~~~a  199 (265)
T PRK05674        196 EAWI  199 (265)
T ss_pred             HHHH
Confidence            4433

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=99.71  E-value=5.7e-17  Score=169.25  Aligned_cols=164  Identities=19%  Similarity=0.192  Sum_probs=116.8

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh-----------hHH
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS-----------DLM  451 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as-----------~~i  451 (690)
                      ++.|++|+++.+-.      .|..+..+.++|.+.++++.+|+++|+|||+.+    |.|++...-           ..+
T Consensus        12 ~~~v~~i~lnrp~~------~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   85 (259)
T PRK06688         12 EDGVLTITINRPDK------KNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPV   85 (259)
T ss_pred             ECCEEEEEecCccc------ccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHH
Confidence            36799999998643      245566788999999999999999999999864    456654210           111


Q ss_pred             HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccchh
Q 005581          452 WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKYA  526 (690)
Q Consensus       452 ~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~~  526 (690)
                      .+.+..+ ..+|||||.|+|.|.|||+.|+++||++||++++.+|.    +|+++.......+..++|            
T Consensus        86 ~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G------------  153 (259)
T PRK06688         86 NRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIG------------  153 (259)
T ss_pred             HHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhh------------
Confidence            2222233 34999999999999999999999999999999998874    444433322222222222            


Q ss_pred             hhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHHHH
Q 005581          527 EVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQK  606 (690)
Q Consensus       527 ~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~~~  606 (690)
                                                        ..     ...+.+++|+.++++||+++||||++.+.+++.+.+.++
T Consensus       154 ----------------------------------~~-----~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~  194 (259)
T PRK06688        154 ----------------------------------RA-----RAAEMLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQ  194 (259)
T ss_pred             ----------------------------------HH-----HHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHH
Confidence                                              11     133456789999999999999999999876665555554


Q ss_pred             c
Q 005581          607 A  607 (690)
Q Consensus       607 a  607 (690)
                      +
T Consensus       195 a  195 (259)
T PRK06688        195 A  195 (259)
T ss_pred             H
Confidence            4

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=99.71  E-value=6.8e-17  Score=167.91  Aligned_cols=164  Identities=16%  Similarity=0.103  Sum_probs=115.0

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh------hHH-----
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS------DLM-----  451 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as------~~i-----  451 (690)
                      ++.|++|+++.+-       .|..+..+.++|.+.++++..|++||+|||+..    |.|++....      +.+     
T Consensus         9 ~~~v~~itlnrp~-------~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~   81 (249)
T PRK07938          9 EPGIAEVTVDYPP-------VNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANR   81 (249)
T ss_pred             CCCEEEEEECCCC-------cccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHH
Confidence            5789999999872       145666788999999999999999999999875    467765321      111     


Q ss_pred             --HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhh
Q 005581          452 --WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEV  528 (690)
Q Consensus       452 --~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~  528 (690)
                        .+.+..+ ..+|||||.|+|.|.|||+.|+++||++||++++.+|...+            ++|+.      |..   
T Consensus        82 ~~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~------------~~G~~------g~~---  140 (249)
T PRK07938         82 GCFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEV------------DRGAL------GAA---  140 (249)
T ss_pred             HHHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccc------------eecCc------hhH---
Confidence              1122223 33999999999999999999999999999999998774211            11210      000   


Q ss_pred             hhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHHHHc
Q 005581          529 LAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKA  607 (690)
Q Consensus       529 ~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~~~a  607 (690)
                                              ..+...|...+     ..+.+++|+.++|+||+++||||++.+.+++.+.+.+++
T Consensus       141 ------------------------~~l~~~vg~~~-----a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a  190 (249)
T PRK07938        141 ------------------------THLQRLVPQHL-----MRALFFTAATITAAELHHFGSVEEVVPRDQLDEAALEVA  190 (249)
T ss_pred             ------------------------HHHHHhcCHHH-----HHHHHHhCCcCCHHHHHHCCCccEEeCHHHHHHHHHHHH
Confidence                                    00111111111     345568899999999999999999998776555555444

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=99.71  E-value=2.3e-16  Score=164.55  Aligned_cols=167  Identities=18%  Similarity=0.151  Sum_probs=118.1

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-----CCCcchhhh--------hHH--
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALAS--------DLM--  451 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-----SpGG~~~as--------~~i--  451 (690)
                      ++.|++|+++.+-.      .|..+..+.++|.++++++..|++||+|||+..     |.|++....        ..+  
T Consensus        14 ~~~v~~itlnrp~~------~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~   87 (256)
T PRK06143         14 DRGVATLTIRNAGS------LNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFIS   87 (256)
T ss_pred             CCCEEEEEEcCCcc------cCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHH
Confidence            47899999998754      245667788999999999999999999999874     456654321        111  


Q ss_pred             --HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccc
Q 005581          452 --WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGK  524 (690)
Q Consensus       452 --~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~  524 (690)
                        .+.+..+ ..+|||||.|+|.|.|||+.|+++||++||++.+.+|.    +|+ +..+....+...+|.         
T Consensus        88 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~---------  157 (256)
T PRK06143         88 RLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGW---------  157 (256)
T ss_pred             HHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCH---------
Confidence              1122222 33999999999999999999999999999999998873    443 222111112112221         


Q ss_pred             hhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHH--
Q 005581          525 YAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAI--  602 (690)
Q Consensus       525 ~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~--  602 (690)
                                                           .     ...+.+++|+.++|+||+++||||++.+.++..+.  
T Consensus       158 -------------------------------------~-----~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~  195 (256)
T PRK06143        158 -------------------------------------A-----RTRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVE  195 (256)
T ss_pred             -------------------------------------H-----HHHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHH
Confidence                                                 1     13445688999999999999999999987655544  


Q ss_pred             --HHHHcCCCC
Q 005581          603 --AKQKANIPE  611 (690)
Q Consensus       603 --a~~~a~l~~  611 (690)
                        +.+++..++
T Consensus       196 ~~a~~la~~~~  206 (256)
T PRK06143        196 RLAASLAGCGP  206 (256)
T ss_pred             HHHHHHHcCCH
Confidence              455555543

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=99.71  E-value=4.7e-17  Score=170.15  Aligned_cols=164  Identities=18%  Similarity=0.186  Sum_probs=115.4

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh---------hHH--
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS---------DLM--  451 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as---------~~i--  451 (690)
                      ++.|++|+++.+-..      |..+..+.++|.+.++++ +|+++|+|||+.+    |.|+++...         ..+  
T Consensus        13 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   85 (260)
T PRK07659         13 EGRVATIMLNRPEAL------NALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMN   85 (260)
T ss_pred             eCCEEEEEeCCcccc------cCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHH
Confidence            368999999987542      455667889999999999 6899999999875    456655320         111  


Q ss_pred             --HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccc
Q 005581          452 --WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGK  524 (690)
Q Consensus       452 --~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~  524 (690)
                        .+.+..+ ..+|||||.|+|.|.|||+.|+++||++||++.+.+|.    +|+++.......+.+++|          
T Consensus        86 ~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg----------  155 (260)
T PRK07659         86 TISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVG----------  155 (260)
T ss_pred             HHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcC----------
Confidence              1112222 23999999999999999999999999999999998773    444443332222222222          


Q ss_pred             hhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHH-HHHHHhcCCcccHHHHHHcCCcccccChHHH----
Q 005581          525 YAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVD-KMEEYAQGRVWTGNDAASRGLVDALGGFSRA----  599 (690)
Q Consensus       525 ~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~-~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~a----  599 (690)
                                                                .. ..+.+++|+.++++||+++||||++. .++.    
T Consensus       156 ------------------------------------------~~~a~~l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a  192 (260)
T PRK07659        156 ------------------------------------------ENKAKQIIWEGKKLSATEALDLGLIDEVI-GGDFQTAA  192 (260)
T ss_pred             ------------------------------------------HHHHHHHHHhCCccCHHHHHHcCChHHHh-hhHHHHHH
Confidence                                                      22 33556789999999999999999998 5554    


Q ss_pred             HHHHHHHcCCC
Q 005581          600 VAIAKQKANIP  610 (690)
Q Consensus       600 i~~a~~~a~l~  610 (690)
                      .+.+.+++..+
T Consensus       193 ~~~a~~l~~~~  203 (260)
T PRK07659        193 KQKISEWLQKP  203 (260)
T ss_pred             HHHHHHHHhCC
Confidence            44455555544

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=99.71  E-value=1.9e-16  Score=166.87  Aligned_cols=164  Identities=20%  Similarity=0.222  Sum_probs=119.2

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh--------h----H
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS--------D----L  450 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as--------~----~  450 (690)
                      ++.|++|+++.+-..      |..+..+.++|.+.++++..|++||+|||+.+    |.|++....        .    .
T Consensus        15 ~~~va~itlnrp~~~------Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   88 (275)
T PRK09120         15 EDGIAWVTLNRPEKR------NAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQER   88 (275)
T ss_pred             ECCEEEEEecCcccc------cCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHH
Confidence            368999999997642      45566788999999999999999999999875    456654310        0    0


Q ss_pred             H----HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeec
Q 005581          451 M----WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIIS  521 (690)
Q Consensus       451 i----~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~  521 (690)
                      +    .+.+..+ ..+|||||.|+|.|.|||+.|+++||++||++++.+|.    +|+++.......+..++|.      
T Consensus        89 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~------  162 (275)
T PRK09120         89 IRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGH------  162 (275)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCH------
Confidence            1    1112222 34999999999999999999999999999999999873    5555544333333333332      


Q ss_pred             ccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHH
Q 005581          522 RGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVA  601 (690)
Q Consensus       522 ~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~  601 (690)
                                                              .|     ..+.+++|+.++++||+++||||++...++..+
T Consensus       163 ----------------------------------------~~-----a~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~  197 (275)
T PRK09120        163 ----------------------------------------RD-----ALYYIMTGETFTGRKAAEMGLVNESVPLAQLRA  197 (275)
T ss_pred             ----------------------------------------HH-----HHHHHhcCCccCHHHHHHcCCcceecCHHHHHH
Confidence                                                    11     334568899999999999999999998776655


Q ss_pred             HHHHHc
Q 005581          602 IAKQKA  607 (690)
Q Consensus       602 ~a~~~a  607 (690)
                      .+.+++
T Consensus       198 ~a~~~a  203 (275)
T PRK09120        198 RTRELA  203 (275)
T ss_pred             HHHHHH
Confidence            555444

>PLN02888 enoyl-CoA hydratase

Probab=99.71  E-value=2.7e-16  Score=164.83  Aligned_cols=164  Identities=20%  Similarity=0.194  Sum_probs=116.8

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhhh-----HH----HH
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALASD-----LM----WR  453 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as~-----~i----~~  453 (690)
                      ++.|++|+++.+-.      .|..+..+.++|.++++++.+|++||+|||+..    |.|++.....     ..    .+
T Consensus        17 ~~~v~~itlnrp~~------~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   90 (265)
T PLN02888         17 RNGIATITINRPKA------LNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETD   90 (265)
T ss_pred             cCCEEEEEEcCCCc------ccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHH
Confidence            36799999998743      245566788999999999999999999999875    4666653110     01    11


Q ss_pred             HHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccchhhh
Q 005581          454 EIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKYAEV  528 (690)
Q Consensus       454 ~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~  528 (690)
                      .+..+ ..+|||||.|+|.|.|||+.|+++||++||++++.++.    +|+++.......+...+|              
T Consensus        91 ~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG--------------  156 (265)
T PLN02888         91 PVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIG--------------  156 (265)
T ss_pred             HHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhC--------------
Confidence            22222 33999999999999999999999999999999998774    343333222222222222              


Q ss_pred             hhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHHHHc
Q 005581          529 LAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKA  607 (690)
Q Consensus       529 ~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~~~a  607 (690)
                                                      ..|     ..+.+++|+.++++||+++||||++.+.++..+.+.+++
T Consensus       157 --------------------------------~~~-----a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a  198 (265)
T PLN02888        157 --------------------------------ANR-----AREVSLTAMPLTAETAERWGLVNHVVEESELLKKAREVA  198 (265)
T ss_pred             --------------------------------HHH-----HHHHHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHH
Confidence                                            111     345578899999999999999999998766555554444

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=99.71  E-value=2.3e-16  Score=168.03  Aligned_cols=164  Identities=24%  Similarity=0.233  Sum_probs=117.3

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh--------------
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS--------------  448 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as--------------  448 (690)
                      ++.|++|+++.+-.      .|..+..+.++|.++|+++..|++||+|||+.+    |.|+++...              
T Consensus        11 ~~~v~~itlnrp~~------~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   84 (296)
T PRK08260         11 ADGIATITLNRPDK------LNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPVE   84 (296)
T ss_pred             eCCEEEEEeCCCcc------cCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccccc
Confidence            36899999998754      245566788999999999999999999999875    466654310              


Q ss_pred             -----------hHHHH----HHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHH
Q 005581          449 -----------DLMWR----EIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGK  508 (690)
Q Consensus       449 -----------~~i~~----~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~  508 (690)
                                 ..+.+    .+..+ ..+|||||.|+|.|.|||+.|+++||++||++.+.+|.    +|+++.......
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~  164 (296)
T PRK08260         85 ADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASSWF  164 (296)
T ss_pred             cccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchhhh
Confidence                       01111    12222 23999999999999999999999999999999998873    444433322211


Q ss_pred             HHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcC
Q 005581          509 LYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRG  588 (690)
Q Consensus       509 l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~G  588 (690)
                      +...+|                                              ..|     ..+.+++|+.++|+||+++|
T Consensus       165 l~r~vG----------------------------------------------~~~-----A~~llltg~~~~a~eA~~~G  193 (296)
T PRK08260        165 LPRLVG----------------------------------------------LQT-----ALEWVYSGRVFDAQEALDGG  193 (296)
T ss_pred             HHHhhC----------------------------------------------HHH-----HHHHHHcCCccCHHHHHHCC
Confidence            211122                                              111     34567889999999999999


Q ss_pred             CcccccChHHHHHHHHHHc
Q 005581          589 LVDALGGFSRAVAIAKQKA  607 (690)
Q Consensus       589 LVD~ig~~~~ai~~a~~~a  607 (690)
                      |||++...++.++.+.+++
T Consensus       194 Lv~~vv~~~~l~~~a~~~a  212 (296)
T PRK08260        194 LVRSVHPPDELLPAARALA  212 (296)
T ss_pred             CceeecCHHHHHHHHHHHH
Confidence            9999998776655555443

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=99.71  E-value=9.5e-17  Score=171.00  Aligned_cols=165  Identities=19%  Similarity=0.147  Sum_probs=115.6

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhh-h-------------
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALA-S-------------  448 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~a-s-------------  448 (690)
                      ++.|++|+++.|-..      |..+..+.++|.++++++..|++||+|||+.+    |.|+++.. .             
T Consensus        12 ~~~Va~ItLnrP~~~------NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~   85 (298)
T PRK12478         12 AGPVATITLNRPEQL------NTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDGRW   85 (298)
T ss_pred             cCCEEEEEecCCccc------CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhccccccc
Confidence            478999999998653      55667789999999999999999999999875    46666531 0             


Q ss_pred             ---hHH----------HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcC
Q 005581          449 ---DLM----------WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIG  514 (690)
Q Consensus       449 ---~~i----------~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klG  514 (690)
                         ..+          .+.+..+ ..+|||||.|+|+|+|||+.|+++||++||++.+.+|.--+--           +|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l-----------~G  154 (298)
T PRK12478         86 DPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRM-----------WG  154 (298)
T ss_pred             CchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEecccccc-----------cc
Confidence               000          0112222 3499999999999999999999999999999999887421100           01


Q ss_pred             CceeeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCccccc
Q 005581          515 FNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALG  594 (690)
Q Consensus       515 i~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig  594 (690)
                      +..     +     .                     .   +..+|...|     ..+.+++|+.++|+||+++||||++.
T Consensus       155 ~~~-----~-----~---------------------~---~~~~vG~~~-----A~~llltg~~i~A~eA~~~GLV~~vv  195 (298)
T PRK12478        155 AYL-----T-----G---------------------M---WLYRLSLAK-----VKWHSLTGRPLTGVQAAEAELINEAV  195 (298)
T ss_pred             CCc-----h-----h---------------------H---HHHHhhHHH-----HHHHHHcCCccCHHHHHHcCCcceec
Confidence            100     0     0                     0   001122222     44667889999999999999999999


Q ss_pred             ChHHHHHHHHHHc
Q 005581          595 GFSRAVAIAKQKA  607 (690)
Q Consensus       595 ~~~~ai~~a~~~a  607 (690)
                      ..+++.+.+.+++
T Consensus       196 ~~~~l~~~a~~~a  208 (298)
T PRK12478        196 PFERLEARVAEVA  208 (298)
T ss_pred             CHHHHHHHHHHHH
Confidence            8766555544443

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=99.70  E-value=9.2e-17  Score=167.48  Aligned_cols=216  Identities=13%  Similarity=0.116  Sum_probs=137.9

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhh--h------------
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALA--S------------  448 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~a--s------------  448 (690)
                      ++.|++|+++.+-..      |..+..+.++|.+.++++.  ++||+|||+.+    |.|++...  .            
T Consensus        11 ~~~i~~itlnrp~~~------Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~   82 (255)
T PRK07112         11 QGDVCFLQLHRPEAQ------NTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDA   82 (255)
T ss_pred             eCCEEEEEEcCCCcc------CCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhH
Confidence            368999999987542      4455677899999999887  36999999864    46665531  0            


Q ss_pred             hHHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeeccc
Q 005581          449 DLMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRG  523 (690)
Q Consensus       449 ~~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g  523 (690)
                      ..+.+.++.+ ..+|||||+|+|.|.|||+.|+++||++||++.+.+|.    +|+++.. ....+..++|         
T Consensus        83 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~-~~~~l~~~vg---------  152 (255)
T PRK07112         83 EPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPAC-VLPFLIRRIG---------  152 (255)
T ss_pred             HHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcch-hhHHHHHHhC---------
Confidence            0012223333 34999999999999999999999999999999998873    4443321 1111222222         


Q ss_pred             chhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHH--HHH
Q 005581          524 KYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSR--AVA  601 (690)
Q Consensus       524 ~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~--ai~  601 (690)
                                                           ..+     ..+.+++|+.++++||+++||||++.+.++  +.+
T Consensus       153 -------------------------------------~~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~~  190 (255)
T PRK07112        153 -------------------------------------TQK-----AHYMTLMTQPVTAQQAFSWGLVDAYGANSDTLLRK  190 (255)
T ss_pred             -------------------------------------HHH-----HHHHHHhCCcccHHHHHHcCCCceecCcHHHHHHH
Confidence                                                 222     335578899999999999999999987543  566


Q ss_pred             HHHHHcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchHH
Q 005581          602 IAKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQR  669 (690)
Q Consensus       602 ~a~~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~~  669 (690)
                      .+++++..++.      .+...|..+........ .....+ ......+.+.+..+|+++++.+..+.|
T Consensus       191 ~a~~l~~~~p~------a~~~~K~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~  252 (255)
T PRK07112        191 HLLRLRCLNKA------AVARYKSYASTLDDTVA-AARPAALAANIEMFADPENLRKIARYVETGKFPW  252 (255)
T ss_pred             HHHHHHhCCHH------HHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHcChHHHHHHHHHHcCCCCCC
Confidence            67777777652      11111222221111100 011111 122445566777899999998765544

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=99.70  E-value=2.8e-16  Score=163.31  Aligned_cols=162  Identities=20%  Similarity=0.237  Sum_probs=116.8

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh------h------H
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS------D------L  450 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as------~------~  450 (690)
                      .+.|++|+++++-.      .|..+..+.++|.+.++++..|++||+|||+.+    |.|++....      +      .
T Consensus        12 ~~~v~~i~ln~p~~------~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   85 (249)
T PRK07110         12 EEGIAQVTMQDRVN------KNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEAN   85 (249)
T ss_pred             eCCEEEEEecCCCc------cCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhhHH
Confidence            36799999998754      245566788999999999999999999999875    466654321      1      1


Q ss_pred             HHHHHHHhcCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccchh
Q 005581          451 MWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKYA  526 (690)
Q Consensus       451 i~~~I~~l~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~~  526 (690)
                      ++..+.  .-+|||||.++|.|.|||+.|+++||++||++.+.++.    +|+++.......+.+               
T Consensus        86 ~~~~l~--~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~---------------  148 (249)
T PRK07110         86 LYSLAL--NCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPE---------------  148 (249)
T ss_pred             HHHHHH--cCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHH---------------
Confidence            222233  33999999999999999999999999999999998763    444333322222221               


Q ss_pred             hhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHHHH
Q 005581          527 EVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQK  606 (690)
Q Consensus       527 ~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~~~  606 (690)
                                                     ++...+     ..+.+++|+.++++||+++||||++...++..+.+.++
T Consensus       149 -------------------------------~~g~~~-----a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~  192 (249)
T PRK07110        149 -------------------------------KLGLAL-----GQEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALEL  192 (249)
T ss_pred             -------------------------------HhCHHH-----HHHHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHH
Confidence                                           221111     44567889999999999999999999866655555544


Q ss_pred             c
Q 005581          607 A  607 (690)
Q Consensus       607 a  607 (690)
                      +
T Consensus       193 a  193 (249)
T PRK07110        193 A  193 (249)
T ss_pred             H
Confidence            3

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=99.70  E-value=2.8e-16  Score=164.39  Aligned_cols=162  Identities=20%  Similarity=0.273  Sum_probs=116.3

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc------CCCcchhhh-----------h
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID------SPGGDALAS-----------D  449 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin------SpGG~~~as-----------~  449 (690)
                      ++.|++|+++.+-..      |..+..+.++|.+.++++.+|+ ||+|||+.+      |.|++....           +
T Consensus        11 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~   83 (261)
T PRK11423         11 INKIATITFNNPAKR------NALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDD   83 (261)
T ss_pred             ECCEEEEEEcCcccc------CCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHH
Confidence            378999999997542      4556678899999999999888 999999864      456654221           1


Q ss_pred             HHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccc
Q 005581          450 LMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGK  524 (690)
Q Consensus       450 ~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~  524 (690)
                      .+.+.++.+ ..+|||||.|+|.|.|||+.|+++||++||++.+.+|.    +|+.+.......                
T Consensus        84 ~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~----------------  147 (261)
T PRK11423         84 PLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILN----------------  147 (261)
T ss_pred             HHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHH----------------
Confidence            112222333 23999999999999999999999999999999998873    444333222222                


Q ss_pred             hhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHH
Q 005581          525 YAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAK  604 (690)
Q Consensus       525 ~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~  604 (690)
                                                    |.++|...|     ..+.+++|+.++|+||+++||||++.+.+++.+.+.
T Consensus       148 ------------------------------l~~~vg~~~-----a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~  192 (261)
T PRK11423        148 ------------------------------FTNDAGFHI-----VKEMFFTASPITAQRALAVGILNHVVEVEELEDFTL  192 (261)
T ss_pred             ------------------------------HHHHhHHHH-----HHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHH
Confidence                                          222333222     445678899999999999999999998776555444


Q ss_pred             HH
Q 005581          605 QK  606 (690)
Q Consensus       605 ~~  606 (690)
                      ++
T Consensus       193 ~~  194 (261)
T PRK11423        193 QM  194 (261)
T ss_pred             HH
Confidence            43

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=99.70  E-value=3.2e-16  Score=165.23  Aligned_cols=168  Identities=24%  Similarity=0.198  Sum_probs=118.1

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh--------------
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS--------------  448 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as--------------  448 (690)
                      ++.|++|+++.+-.      .|..+..+.++|.+.++++.+|++||+|||+.+    |.|+++...              
T Consensus        17 ~~~v~~itlnrp~~------~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~   90 (276)
T PRK05864         17 RPEIALITLNRPER------MNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTY   90 (276)
T ss_pred             cCCEEEEEecCCcc------ccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccchhH
Confidence            36899999998743      245566788999999999999999999999875    466655321              


Q ss_pred             -----hHHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----cccccc-ccchHHHHHHcCCce
Q 005581          449 -----DLMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTG-KFNLGKLYEKIGFNK  517 (690)
Q Consensus       449 -----~~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~-~~~~~~l~~klGi~~  517 (690)
                           ..+.+.+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.++.    +|+.+. ......+.+.+|   
T Consensus        91 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG---  167 (276)
T PRK05864         91 ALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIG---  167 (276)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhC---
Confidence                 0011122222 34999999999999999999999999999999998873    454431 111111111111   


Q ss_pred             eeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChH
Q 005581          518 EIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFS  597 (690)
Q Consensus       518 ~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~  597 (690)
                                                                 ..     ...+.+++|+.++|+||+++||||++...+
T Consensus       168 -------------------------------------------~~-----~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~  199 (276)
T PRK05864        168 -------------------------------------------SS-----RAFEIMLTGRDVDAEEAERIGLVSRQVPDE  199 (276)
T ss_pred             -------------------------------------------HH-----HHHHHHHcCCccCHHHHHHcCCcceeeCHH
Confidence                                                       11     134567889999999999999999998876


Q ss_pred             HHH----HHHHHHcCCCC
Q 005581          598 RAV----AIAKQKANIPE  611 (690)
Q Consensus       598 ~ai----~~a~~~a~l~~  611 (690)
                      +..    +.|.+++..++
T Consensus       200 ~l~~~a~~~a~~la~~~p  217 (276)
T PRK05864        200 QLLDTCYAIAARMAGFSR  217 (276)
T ss_pred             HHHHHHHHHHHHHHhCCH
Confidence            654    44555555543

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=99.69  E-value=4.4e-16  Score=163.51  Aligned_cols=163  Identities=18%  Similarity=0.190  Sum_probs=116.7

Q ss_pred             CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh----------hHHH-
Q 005581          388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS----------DLMW-  452 (690)
Q Consensus       388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as----------~~i~-  452 (690)
                      +.|++|+++.+-.      .|..+..+.++|.+.++++..|++||+|||+..    |.|++....          ...+ 
T Consensus        20 ~~v~~itlnrp~~------~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   93 (268)
T PRK07327         20 PGVLEIVLNGPGA------LNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWR   93 (268)
T ss_pred             CCEEEEEEcCCCc------cCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHH
Confidence            6799999998753      245566788999999999999999999999875    456654210          0111 


Q ss_pred             ---HHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccc
Q 005581          453 ---REIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGK  524 (690)
Q Consensus       453 ---~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~  524 (690)
                         +.+..+ .-+|||||.|+|.|.|||+.|+++||++||++++.++.    +|+++.......+...+|.         
T Consensus        94 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~---------  164 (268)
T PRK07327         94 EARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGM---------  164 (268)
T ss_pred             HHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCH---------
Confidence               122222 33999999999999999999999999999999998873    4544433322222222221         


Q ss_pred             hhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHH
Q 005581          525 YAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAK  604 (690)
Q Consensus       525 ~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~  604 (690)
                                                           .     ...+.+++|+.++|+||+++||||++.+.++..+.+.
T Consensus       165 -------------------------------------~-----~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~  202 (268)
T PRK07327        165 -------------------------------------A-----KAKYYLLLCEPVSGEEAERIGLVSLAVDDDELLPKAL  202 (268)
T ss_pred             -------------------------------------H-----HHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHH
Confidence                                                 1     1344578899999999999999999998776555554


Q ss_pred             HHc
Q 005581          605 QKA  607 (690)
Q Consensus       605 ~~a  607 (690)
                      +++
T Consensus       203 ~~a  205 (268)
T PRK07327        203 EVA  205 (268)
T ss_pred             HHH
Confidence            443

>PRK08321 naphthoate synthase; Validated

Probab=99.69  E-value=1.3e-16  Score=170.18  Aligned_cols=166  Identities=20%  Similarity=0.215  Sum_probs=116.6

Q ss_pred             CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-----------CCCcchhhh--------
Q 005581          388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----------SPGGDALAS--------  448 (690)
Q Consensus       388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-----------SpGG~~~as--------  448 (690)
                      +.|++|+++.+-..      |..+..+.++|.++++++..|++||+|||+.+           |.|++....        
T Consensus        33 ~~va~itlnrP~~~------Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~  106 (302)
T PRK08321         33 QGTVRIAFDRPEVR------NAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYA  106 (302)
T ss_pred             CCEEEEEeCCcccc------cCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhcccccccc
Confidence            67999999998542      45566788999999999999999999999864           466654210        


Q ss_pred             --------h--HH-----HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEe-cCceecc----ccccccccchH
Q 005581          449 --------D--LM-----WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAE-NLTLTGS----IGVVTGKFNLG  507 (690)
Q Consensus       449 --------~--~i-----~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~-p~t~~GS----IGv~~~~~~~~  507 (690)
                              +  ..     .+..+.+ .-+|||||.|+|.|.|||+.|+++||++||+ +.+.++-    +|+++......
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~~~~  186 (302)
T PRK08321        107 EGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSA  186 (302)
T ss_pred             ccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCchHHH
Confidence                    0  00     0112223 2389999999999999999999999999999 5787763    34333322222


Q ss_pred             HHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHc
Q 005581          508 KLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASR  587 (690)
Q Consensus       508 ~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~  587 (690)
                      .+.+++|                                              ..|     ..+.+++|+.++|+||+++
T Consensus       187 ~L~r~vG----------------------------------------------~~~-----A~~l~ltG~~~~A~eA~~~  215 (302)
T PRK08321        187 YLARQVG----------------------------------------------QKF-----AREIFFLGRTYSAEEAHDM  215 (302)
T ss_pred             HHHHHhC----------------------------------------------HHH-----HHHHHHcCCccCHHHHHHC
Confidence            2222222                                              111     3456788999999999999


Q ss_pred             CCcccccChHHHHH----HHHHHcCCC
Q 005581          588 GLVDALGGFSRAVA----IAKQKANIP  610 (690)
Q Consensus       588 GLVD~ig~~~~ai~----~a~~~a~l~  610 (690)
                      ||||++...+++.+    .|.+++..+
T Consensus       216 GLv~~vv~~~~l~~~a~~~a~~la~~~  242 (302)
T PRK08321        216 GAVNAVVPHAELETEALEWAREINGKS  242 (302)
T ss_pred             CCceEeeCHHHHHHHHHHHHHHHHhCC
Confidence            99999998765544    445555544

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=99.69  E-value=4.7e-16  Score=153.85  Aligned_cols=164  Identities=20%  Similarity=0.219  Sum_probs=134.8

Q ss_pred             EEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECccc
Q 005581          393 IRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVA  472 (690)
Q Consensus       393 I~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g~A  472 (690)
                      |.+.|+|.+.           +.+.++.+|..++.++..|-|.|.||||||++++...||+.++..  ++||.+.+-|.|
T Consensus        30 I~l~g~I~~~-----------~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~AIydtm~~i--k~~V~ti~~G~A   96 (200)
T COG0740          30 IFLGGEIEDH-----------MANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFI--KPPVSTICMGQA   96 (200)
T ss_pred             EEEeeeechH-----------HHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhHHHHHHHHhc--CCCeEEEEecHH
Confidence            9999999852           467888999999988889999999999999999999999999988  899999999999


Q ss_pred             cHHHHHHHHhcCeE--EEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHHH
Q 005581          473 ASGGYYMAMAAGTI--LAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQN  550 (690)
Q Consensus       473 aSGGy~iA~aaD~I--~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~  550 (690)
                      ||.|..|++++++.  ++.|++.+-.....++.                  .|..             .+.+.-.+.+..
T Consensus        97 aSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~------------------~G~a-------------~Di~i~A~ei~~  145 (200)
T COG0740          97 ASMGSVLLMAGDKGKRFALPNARIMIHQPSGGA------------------QGQA-------------SDIEIHAREILK  145 (200)
T ss_pred             HhHHHHHHhcCCCCCceeCCCceEEEecCCccC------------------ccCH-------------HHHHHHHHHHHH
Confidence            99999999999986  99999986433222111                  1222             234455566666


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHhc-CCcccHHHHHHcCCcccccChHHHH
Q 005581          551 AYKLFRDKAAFSRSMTVDKMEEYAQ-GRVWTGNDAASRGLVDALGGFSRAV  600 (690)
Q Consensus       551 ~y~~F~~~Va~~R~~~~~~v~~l~~-Grv~tg~eA~e~GLVD~ig~~~~ai  600 (690)
                      +.+...+..+++.|.+.++++...+ ..+++|+||+++||||+|....++.
T Consensus       146 ~~~~l~~i~a~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~~~  196 (200)
T COG0740         146 IKERLNRIYAEHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESREAA  196 (200)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHhhcccccCCHHHHHHcCCcceeccccccc
Confidence            6677777779999999999988777 8888999999999999998765443

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=99.69  E-value=4e-16  Score=162.83  Aligned_cols=164  Identities=23%  Similarity=0.227  Sum_probs=123.3

Q ss_pred             CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhhh---------HHH--
Q 005581          388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALASD---------LMW--  452 (690)
Q Consensus       388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as~---------~i~--  452 (690)
                      +.|++|+++.+-..      |..+..+.++|.++++++..|++||+|||+.+    |.|+++....         ...  
T Consensus        13 ~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~   86 (257)
T COG1024          13 DGIAVITLNRPEKL------NALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQP   86 (257)
T ss_pred             CCEEEEEecCcccc------cCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhH
Confidence            44999999998763      45667789999999999999999999999875    5677654310         111  


Q ss_pred             --HHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccch
Q 005581          453 --REIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKY  525 (690)
Q Consensus       453 --~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~  525 (690)
                        +.++.+ ..+|||||+|+|+|.|||+.|+++||++||++++.+|.    +|++|+......+...+|.          
T Consensus        87 ~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~----------  156 (257)
T COG1024          87 GQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGR----------  156 (257)
T ss_pred             HHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCH----------
Confidence              123333 33999999999999999999999999999999999984    6777655434333333332          


Q ss_pred             hhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccCh-HHHHHHHH
Q 005581          526 AEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGF-SRAVAIAK  604 (690)
Q Consensus       526 ~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~-~~ai~~a~  604 (690)
                                                          .     ...+.+++|+.++++||+++||||++... +++++.+.
T Consensus       157 ------------------------------------~-----~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~  195 (257)
T COG1024         157 ------------------------------------G-----RAKELLLTGEPISAAEALELGLVDEVVPDAEELLERAL  195 (257)
T ss_pred             ------------------------------------H-----HHHHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHH
Confidence                                                1     13335788999999999999999998874 56666666


Q ss_pred             HHcC
Q 005581          605 QKAN  608 (690)
Q Consensus       605 ~~a~  608 (690)
                      +++.
T Consensus       196 ~~a~  199 (257)
T COG1024         196 ELAR  199 (257)
T ss_pred             HHHH
Confidence            6655

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=99.69  E-value=5.9e-16  Score=161.36  Aligned_cols=164  Identities=23%  Similarity=0.224  Sum_probs=116.7

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh-----hHHH-----
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS-----DLMW-----  452 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as-----~~i~-----  452 (690)
                      ++.|++|+++.+-..      |..+..+.++|.+.++++..|++||+|||+..    |.|++....     ....     
T Consensus        10 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~   83 (254)
T PRK08259         10 NGPVTTVILNRPEVR------NAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDG   83 (254)
T ss_pred             ECCEEEEEecCCccc------cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhhcc
Confidence            368999999998542      45667788999999999999999999999875    466664320     0111     


Q ss_pred             HH-HHHhcCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccchhh
Q 005581          453 RE-IRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKYAE  527 (690)
Q Consensus       453 ~~-I~~l~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~~~  527 (690)
                      .. ...+.-+|||||.|+|.|.|||+.|+++||++||++++.+|.    +|+.+.......+..++|             
T Consensus        84 ~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG-------------  150 (254)
T PRK08259         84 PMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIG-------------  150 (254)
T ss_pred             hhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhC-------------
Confidence            00 111234899999999999999999999999999999998773    343333222212222222             


Q ss_pred             hhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHHHHc
Q 005581          528 VLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKA  607 (690)
Q Consensus       528 ~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~~~a  607 (690)
                                                       ..     ...+.+++|+.++++||+++||||++.+.++..+.+.+++
T Consensus       151 ---------------------------------~~-----~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a  192 (254)
T PRK08259        151 ---------------------------------HS-----RAMDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELA  192 (254)
T ss_pred             ---------------------------------HH-----HHHHHHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHH
Confidence                                             11     1345578899999999999999999998776555554443

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=99.68  E-value=1.1e-15  Score=153.14  Aligned_cols=161  Identities=22%  Similarity=0.214  Sum_probs=125.7

Q ss_pred             EEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECc
Q 005581          391 AVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSD  470 (690)
Q Consensus       391 AvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g  470 (690)
                      .+|.+.|+|++           .+...+++.|..+...+..+.|.|+||||||++.+...|++.|+..  +.||++.+.|
T Consensus        24 r~I~i~g~I~~-----------~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~ag~aI~d~i~~~--~~~V~t~v~G   90 (197)
T PRK14512         24 RSIVIAGEINK-----------DLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAIFNMIRFV--KPKVFTIGVG   90 (197)
T ss_pred             cEEEECCEEcH-----------HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHhC--CCCEEEEEEe
Confidence            47888999984           3578899999888875677999999999999999999999999977  7899999999


Q ss_pred             cccHHHHHHHHhcCe--EEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHH
Q 005581          471 VAASGGYYMAMAAGT--ILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSA  548 (690)
Q Consensus       471 ~AaSGGy~iA~aaD~--I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i  548 (690)
                      .|+|.|..|+++||+  +++.|++.+...-..+..                  .|...++             +.-.+.+
T Consensus        91 ~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~------------------~G~a~di-------------~~~a~~l  139 (197)
T PRK14512         91 LVASAAALIFLAAKKESRFSLPNARYLLHQPLSGF------------------KGVATDI-------------EIYANEL  139 (197)
T ss_pred             eeHhHHHHHHhcCCcCceeECCCCcEEEEcCcccc------------------ccCHHHH-------------HHHHHHH
Confidence            999999999999986  899999986543211111                  1111111             1122344


Q ss_pred             HHHHHHHHHHHHhhcCCCHHHHHHHhc-CCcccHHHHHHcCCcccccC
Q 005581          549 QNAYKLFRDKAAFSRSMTVDKMEEYAQ-GRVWTGNDAASRGLVDALGG  595 (690)
Q Consensus       549 ~~~y~~F~~~Va~~R~~~~~~v~~l~~-Grv~tg~eA~e~GLVD~ig~  595 (690)
                      ++..+.+.+..++.+|++.+.++.... ...+|++||+++||||+|..
T Consensus       140 ~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~~lta~EA~~yGliD~I~~  187 (197)
T PRK14512        140 NKVKSELNDIIAKETGQELDKVEKDTDRDFWLDSSSAVKYGLVFEVVE  187 (197)
T ss_pred             HHHHHHHHHHHHHHhCcCHHHHHHhhhcCcccCHHHHHHcCCccEeec
Confidence            555555566668888999999998877 66779999999999999875

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=99.68  E-value=8.8e-16  Score=154.41  Aligned_cols=161  Identities=17%  Similarity=0.235  Sum_probs=131.6

Q ss_pred             EEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECc
Q 005581          391 AVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSD  470 (690)
Q Consensus       391 AvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g  470 (690)
                      .+|.+.|+|++           .+.+.++..|..+..++..+.|.|+||||||++.+...|++.|+..  +.||++.+.|
T Consensus        32 rii~i~g~I~~-----------~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG~v~~g~~I~d~i~~~--~~~v~t~~~G   98 (200)
T PRK00277         32 RIIFLGGEVED-----------HMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFI--KPDVSTICIG   98 (200)
T ss_pred             cEEEECCEECH-----------HHHHHHHHHHHHhhccCCCCCEEEEEECCCCcHHHHHHHHHHHHhc--CCCEEEEEEe
Confidence            37889999984           4578899999999888888899999999999999999999999977  6789999999


Q ss_pred             cccHHHHHHHHhcC--eEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHH
Q 005581          471 VAASGGYYMAMAAG--TILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSA  548 (690)
Q Consensus       471 ~AaSGGy~iA~aaD--~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i  548 (690)
                      .|+|+|..|+++|+  .+++.|++.++..-..+..                  .|             +..+.+...+.+
T Consensus        99 ~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~------------------~G-------------~a~di~~~a~~l  147 (200)
T PRK00277         99 QAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGF------------------QG-------------QATDIEIHAREI  147 (200)
T ss_pred             EeccHHHHHHhcCCCCCEEEcCCceEEeccCcccc------------------cC-------------ChhHHHHHHHHH
Confidence            99999999999876  6999999987643221110                  11             122333455677


Q ss_pred             HHHHHHHHHHHHhhcCCCHHHHHHHhc-CCcccHHHHHHcCCcccccC
Q 005581          549 QNAYKLFRDKAAFSRSMTVDKMEEYAQ-GRVWTGNDAASRGLVDALGG  595 (690)
Q Consensus       549 ~~~y~~F~~~Va~~R~~~~~~v~~l~~-Grv~tg~eA~e~GLVD~ig~  595 (690)
                      +.+.+.+.+..++.+|++.+.+++... +..++++||+++||||+|..
T Consensus       148 ~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~  195 (200)
T PRK00277        148 LKLKKRLNEILAEHTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLT  195 (200)
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHhhCCccccHHHHHHcCCccEEee
Confidence            777778888889999999999998766 78889999999999999864

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.67  E-value=7.7e-16  Score=151.22  Aligned_cols=157  Identities=16%  Similarity=0.106  Sum_probs=131.8

Q ss_pred             EEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-Cc
Q 005581          143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC  221 (690)
Q Consensus       143 vI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~-~a  221 (690)
                      +|.+.|+|.+.         +..+++..|..+..++..+.|+|.+|||||++.....|.+.|+.+   +.||++++. .|
T Consensus        11 ~i~i~g~I~~~---------~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~~~i~~~l~~~---~~~v~t~~~g~a   78 (171)
T cd07017          11 IIFLGGPIDDE---------VANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGLAIYDTMQYI---KPPVSTICLGLA   78 (171)
T ss_pred             EEEEcCEEcHH---------HHHHHHHHHHHHHccCCCCceEEEEECCCCCHHHHHHHHHHHHhc---CCCEEEEEEeEe
Confidence            68899999864         356899999999999889999999999999999999999999865   589999997 79


Q ss_pred             chhhhHHhhccC--eeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHH
Q 005581          222 GEKEYYLACACE--ELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD  299 (690)
Q Consensus       222 as~gY~LAsaaD--~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld  299 (690)
                      +|+|++|+++||  ++||.|.+.++++.+..                              ..  .-+..+.+.....++
T Consensus        79 aS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~------------------------------~~--~g~~~~~~~~~~~l~  126 (171)
T cd07017          79 ASMGALLLAAGTKGKRYALPNSRIMIHQPLG------------------------------GA--GGQASDIEIQAKEIL  126 (171)
T ss_pred             hhHHHHHHHcCCCCCEEEccchHHHHcCCCc------------------------------cC--CCCHHHHHHHHHHHH
Confidence            999999999999  89999999999886511                              00  111233444455677


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHhc-CcccHHHHHhcCCeeEe
Q 005581          300 NIYGNWLDKVSSTKGKRKEDIERFIND-GVYKVERLKEEGFITNV  343 (690)
Q Consensus       300 ~~~~~f~~~Va~~Rg~~~~~v~~~~~~-~v~~a~eAl~~GLID~i  343 (690)
                      .+.+.+.+.+++.+|++.+++.++++. ..++++||+++||||+|
T Consensus       127 ~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~lta~EA~e~GiiD~V  171 (171)
T cd07017         127 RLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSAEEAKEYGLIDKI  171 (171)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHHHHHcCCCccC
Confidence            889999999999999999999999965 56699999999999985

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=99.67  E-value=2.5e-16  Score=164.60  Aligned_cols=167  Identities=20%  Similarity=0.255  Sum_probs=118.1

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh-------h------
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS-------D------  449 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as-------~------  449 (690)
                      .+.|++|+++.+=..      |..+..+.++|.+.++++..|+++|+|||+..    |.|++....       .      
T Consensus        13 ~~~v~~i~lnrp~~~------Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   86 (260)
T PRK07827         13 DGGVATLTLDSPHNR------NALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAVAR   86 (260)
T ss_pred             eCCEEEEEEcCcccc------CCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHHHH
Confidence            368999999987542      45566788999999999999999999999875    456654210       0      


Q ss_pred             --HHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecc
Q 005581          450 --LMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISR  522 (690)
Q Consensus       450 --~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~  522 (690)
                        .+.+.++.+ ..+|||||.++|.|.|||+.|+++||++||++.+.+|.    +|+++.......+ .++         
T Consensus        87 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l-~~l---------  156 (260)
T PRK07827         87 AREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLL-PRL---------  156 (260)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhH-Hhh---------
Confidence              111222323 34999999999999999999999999999999998873    4444333221111 011         


Q ss_pred             cchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccC-h-HHHH
Q 005581          523 GKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGG-F-SRAV  600 (690)
Q Consensus       523 g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~-~-~~ai  600 (690)
                                                           .     .....+.+++|+.|+++||+++||||++.+ + +.+.
T Consensus       157 -------------------------------------~-----~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~l~~~a~  194 (260)
T PRK07827        157 -------------------------------------S-----PRAAARYYLTGEKFGAAEAARIGLVTAAADDVDAAVA  194 (260)
T ss_pred             -------------------------------------h-----HHHHHHHHHhCCccCHHHHHHcCCcccchHHHHHHHH
Confidence                                                 1     112345578899999999999999999963 2 3455


Q ss_pred             HHHHHHcCCCC
Q 005581          601 AIAKQKANIPE  611 (690)
Q Consensus       601 ~~a~~~a~l~~  611 (690)
                      +.+.+++..++
T Consensus       195 ~~a~~la~~~~  205 (260)
T PRK07827        195 ALLADLRRGSP  205 (260)
T ss_pred             HHHHHHHhCCH
Confidence            66777777654

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=99.67  E-value=1.5e-15  Score=162.09  Aligned_cols=164  Identities=16%  Similarity=0.105  Sum_probs=115.4

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhhh-------------
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALASD-------------  449 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as~-------------  449 (690)
                      .+.|++|+++++-..      |..+..+.++|.++++++..|++||+|||+.+    |.|+++....             
T Consensus        17 ~~~V~~Itlnrp~~~------Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~~~   90 (302)
T PRK08272         17 TGRIARITLNRPEKG------NAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGGAYP   90 (302)
T ss_pred             ECCEEEEEecCcccc------CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccccccc
Confidence            368999999987642      45566789999999999999999999999875    4566542100             


Q ss_pred             ------------------------HHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecccccc-ccc
Q 005581          450 ------------------------LMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVV-TGK  503 (690)
Q Consensus       450 ------------------------~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~-~~~  503 (690)
                                              .+.+.+..+ ..+|||||.|+|.|.|||+.|+++||++||++.+.+|...+- ++.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~gg~  170 (302)
T PRK08272         91 GKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGV  170 (302)
T ss_pred             cccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhcccC
Confidence                                    001112222 349999999999999999999999999999999988742211 111


Q ss_pred             cchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHH
Q 005581          504 FNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGND  583 (690)
Q Consensus       504 ~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~e  583 (690)
                      +....                                              +..+|...|     ..+.+++|+.++|+|
T Consensus       171 ~~~~~----------------------------------------------~~~~vG~~~-----A~~llltG~~i~a~e  199 (302)
T PRK08272        171 PATGM----------------------------------------------WAYRLGPQR-----AKRLLFTGDCITGAQ  199 (302)
T ss_pred             ChHHH----------------------------------------------HHHHhhHHH-----HHHHHHcCCccCHHH
Confidence            10000                                              011222222     345678899999999


Q ss_pred             HHHcCCcccccChHHHHHHHHHHc
Q 005581          584 AASRGLVDALGGFSRAVAIAKQKA  607 (690)
Q Consensus       584 A~e~GLVD~ig~~~~ai~~a~~~a  607 (690)
                      |+++||||++.+.+++.+.+.++|
T Consensus       200 A~~~GLv~~vv~~~~l~~~a~~la  223 (302)
T PRK08272        200 AAEWGLAVEAVPPEELDERTERLV  223 (302)
T ss_pred             HHHcCCCceecCHHHHHHHHHHHH
Confidence            999999999998776665554443

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=99.67  E-value=8.1e-16  Score=159.18  Aligned_cols=167  Identities=24%  Similarity=0.243  Sum_probs=119.6

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh--------hH----
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS--------DL----  450 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as--------~~----  450 (690)
                      ++.|++|+++.+-..      |..+..+.++|.+.|+.+.+|++||+||++..    |.|++....        ..    
T Consensus         5 ~~~v~~i~ln~p~~~------N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~   78 (245)
T PF00378_consen    5 EDGVATITLNRPEKR------NALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNSDEEEAREFFRR   78 (245)
T ss_dssp             ETTEEEEEEECGGGT------TEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHHHHHHHHHHHHH
T ss_pred             ECCEEEEEECCCCCC------CCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhccccccccccchh
Confidence            378999999999652      45566789999999999999999998888753    455554211        11    


Q ss_pred             HHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccch
Q 005581          451 MWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKY  525 (690)
Q Consensus       451 i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~  525 (690)
                      +.+.+..+ ..+|||||.++|.|.|||+.++++||++||++.+.+|.    +|+++.......+..++|.          
T Consensus        79 ~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~----------  148 (245)
T PF00378_consen   79 FQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGP----------  148 (245)
T ss_dssp             HHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHH----------
T ss_pred             hccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeec----------
Confidence            11222222 34999999999999999999999999999999999884    4544444333333322221          


Q ss_pred             hhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHH----H
Q 005581          526 AEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAV----A  601 (690)
Q Consensus       526 ~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai----~  601 (690)
                                                          .+     ..+.+++|+.++|+||+++||||++...+++.    +
T Consensus       149 ------------------------------------~~-----a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~  187 (245)
T PF00378_consen  149 ------------------------------------SR-----ARELLLTGEPISAEEALELGLVDEVVPDEELDEEALE  187 (245)
T ss_dssp             ------------------------------------HH-----HHHHHHHTCEEEHHHHHHTTSSSEEESGGGHHHHHHH
T ss_pred             ------------------------------------cc-----ccccccccccchhHHHHhhcceeEEcCchhhhHHHHH
Confidence                                                11     33556889999999999999999998877544    4


Q ss_pred             HHHHHcCCC
Q 005581          602 IAKQKANIP  610 (690)
Q Consensus       602 ~a~~~a~l~  610 (690)
                      .++++++.+
T Consensus       188 ~a~~l~~~~  196 (245)
T PF00378_consen  188 LAKRLAAKP  196 (245)
T ss_dssp             HHHHHHTSC
T ss_pred             HHHHHhcCC
Confidence            455555543

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=99.67  E-value=1.4e-15  Score=154.10  Aligned_cols=160  Identities=19%  Similarity=0.163  Sum_probs=127.4

Q ss_pred             EEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECcc
Q 005581          392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV  471 (690)
Q Consensus       392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g~  471 (690)
                      +|.+.|+|++           .+++.++.+|..+...+.-+-|.|+||||||++.+...|+++++..  +-||++.+.|.
T Consensus        56 iifl~~~Idd-----------~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aGlaIyd~m~~~--~~~V~tv~~G~  122 (221)
T PRK14514         56 IIFLGTQIDD-----------YTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGLGIYDTMQFI--SSDVATICTGM  122 (221)
T ss_pred             EEEECCEEcH-----------HHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhHHHHHHHHHhc--CCCEEEEEEEE
Confidence            6789999984           5678899988888766666899999999999999999999999988  77999999999


Q ss_pred             ccHHHHHHHHhcCe--EEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHH
Q 005581          472 AASGGYYMAMAAGT--ILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQ  549 (690)
Q Consensus       472 AaSGGy~iA~aaD~--I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~  549 (690)
                      |||.|..|+++||+  ++|.|++.+...-..++.                  .|.             ..+.+.-.+.+.
T Consensus       123 AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~------------------~G~-------------a~di~i~a~el~  171 (221)
T PRK14514        123 AASMASVLLVAGTKGKRSALPHSRVMIHQPLGGA------------------QGQ-------------ASDIEITAREIQ  171 (221)
T ss_pred             ehhHHHHHHhcCCCCceeeCCCCEEEeccCCccc------------------CCC-------------cchHHHHHHHHH
Confidence            99999999999996  899999987643321110                  111             112223344556


Q ss_pred             HHHHHHHHHHHhhcCCCHHHHHHHhc-CCcccHHHHHHcCCcccccC
Q 005581          550 NAYKLFRDKAAFSRSMTVDKMEEYAQ-GRVWTGNDAASRGLVDALGG  595 (690)
Q Consensus       550 ~~y~~F~~~Va~~R~~~~~~v~~l~~-Grv~tg~eA~e~GLVD~ig~  595 (690)
                      ++.+...+..++..|.+.+++++..+ ..++|++||+++||||+|..
T Consensus       172 ~~~~~i~~iya~~TG~~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~  218 (221)
T PRK14514        172 KLKKELYTIIADHSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEVLI  218 (221)
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCccEEee
Confidence            66666666668888999999998777 77779999999999999853

>PRK08788 enoyl-CoA hydratase; Validated

Probab=99.66  E-value=2.3e-15  Score=159.37  Aligned_cols=163  Identities=18%  Similarity=0.168  Sum_probs=114.6

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHh-----CCCceEEEEEcc-----CCCcchhhh--------
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRE-----SKRYKAAIIRID-----SPGGDALAS--------  448 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~-----D~~VkaVVLrin-----SpGG~~~as--------  448 (690)
                      ++.|++|+++ +=.      .|..+..+.++|.+.++++.+     |++||+|||+.+     |.|++....        
T Consensus        24 ~~~ia~itl~-p~~------~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~   96 (287)
T PRK08788         24 ERNVMWMYMR-AQP------RPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGD   96 (287)
T ss_pred             cCCEEEEEEC-CCC------CCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccc
Confidence            4789999985 422      245566788999999999998     899999999886     456654310        


Q ss_pred             -h-------HHHHHHHHh----cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHH
Q 005581          449 -D-------LMWREIRLL----SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEK  512 (690)
Q Consensus       449 -~-------~i~~~I~~l----~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~k  512 (690)
                       +       .+.+.+..+    ..+|||||.|+|.|.|||+.|+++||++||++.+.+|.    +|+++.......+.  
T Consensus        97 ~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~--  174 (287)
T PRK08788         97 RDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLA--  174 (287)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHH--
Confidence             0       011112211    35899999999999999999999999999999998873    44433332222222  


Q ss_pred             cCCceeeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCccc
Q 005581          513 IGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDA  592 (690)
Q Consensus       513 lGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~  592 (690)
                                                                  ..|...|     ..+.+++|+.++|+||+++||||+
T Consensus       175 --------------------------------------------~~vG~~~-----A~ellltG~~l~A~eA~~~GLV~~  205 (287)
T PRK08788        175 --------------------------------------------RRVGPKL-----AEELILSGKLYTAEELHDMGLVDV  205 (287)
T ss_pred             --------------------------------------------HHhhHHH-----HHHHHHcCCCCCHHHHHHCCCCcE
Confidence                                                        2222222     345578899999999999999999


Q ss_pred             ccChHHHHHHHHHHc
Q 005581          593 LGGFSRAVAIAKQKA  607 (690)
Q Consensus       593 ig~~~~ai~~a~~~a  607 (690)
                      +.+.++..+.+.+++
T Consensus       206 vv~~~el~~~a~~~a  220 (287)
T PRK08788        206 LVEDGQGEAAVRTFI  220 (287)
T ss_pred             ecCchHHHHHHHHHH
Confidence            988766555544443

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=99.66  E-value=2.2e-15  Score=150.45  Aligned_cols=160  Identities=18%  Similarity=0.239  Sum_probs=125.8

Q ss_pred             EEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECc
Q 005581          391 AVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSD  470 (690)
Q Consensus       391 AvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g  470 (690)
                      -+|.+.|+|++           .+.+.++..|..+..++..+.|+|+||||||++.++..|++.|+..  +.||.+.+.|
T Consensus        27 riI~l~g~I~~-----------~~~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~g~~I~d~l~~~--~~~v~t~~~G   93 (191)
T TIGR00493        27 RIIFLSGEVND-----------SVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIYDTMQFI--KPDVSTICIG   93 (191)
T ss_pred             eEEEEccEECh-----------HHHHHHHHHHHHhhccCCCCCEEEEEECCCCCHHHHHHHHHHHHhc--CCCEEEEEEE
Confidence            47899999984           3568899999999888888999999999999999999999999987  5678888889


Q ss_pred             cccHHHHHHHHhcC--eEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHH
Q 005581          471 VAASGGYYMAMAAG--TILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSA  548 (690)
Q Consensus       471 ~AaSGGy~iA~aaD--~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i  548 (690)
                      .|+|.|..|++++|  ++++.|++.++........                  .|...             +.+.-.+.+
T Consensus        94 ~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~------------------~G~a~-------------d~~~~a~~l  142 (191)
T TIGR00493        94 QAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGA------------------QGQAS-------------DIEIQANEI  142 (191)
T ss_pred             eeccHHHHHHhcCCCCcEEecCCceEEEecCcccc------------------cCCcc-------------hhHHHHHHH
Confidence            99999999999887  4999999998754322111                  11111             112223455


Q ss_pred             HHHHHHHHHHHHhhcCCCHHHHHHHhc-CCcccHHHHHHcCCccccc
Q 005581          549 QNAYKLFRDKAAFSRSMTVDKMEEYAQ-GRVWTGNDAASRGLVDALG  594 (690)
Q Consensus       549 ~~~y~~F~~~Va~~R~~~~~~v~~l~~-Grv~tg~eA~e~GLVD~ig  594 (690)
                      +.+.+.+.+..++..|++.+.+++.+. +..+|++||+++||||+|.
T Consensus       143 ~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~ii  189 (191)
T TIGR00493       143 LRLKGLLNDILANHTGQSLEQIEKDTERDFFMSAEEAKEYGLIDSVL  189 (191)
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHhhCCccCcHHHHHHcCCccEEe
Confidence            556666666668888999999998777 7777999999999999984

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=99.65  E-value=3.3e-15  Score=148.68  Aligned_cols=163  Identities=23%  Similarity=0.243  Sum_probs=119.7

Q ss_pred             CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhh--------------hh
Q 005581          388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALA--------------SD  449 (690)
Q Consensus       388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~a--------------s~  449 (690)
                      ++|++|.++.+-..      +..+..+.++|.+.++.+..|+++|+|||+.+    |+|++...              ..
T Consensus         7 ~~i~~i~l~~~~~~------N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~   80 (195)
T cd06558           7 GGVATITLNRPEKR------NALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIR   80 (195)
T ss_pred             CCEEEEEECCcccc------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHH
Confidence            57999999988632      34556788999999999999999999999986    45655421              11


Q ss_pred             HHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccc
Q 005581          450 LMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGK  524 (690)
Q Consensus       450 ~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~  524 (690)
                      .+.+.+..+ ..+||||+.++|.|.|||+.++++||+++|++++.++.    +|.++.......+.+++|          
T Consensus        81 ~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g----------  150 (195)
T cd06558          81 ELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVG----------  150 (195)
T ss_pred             HHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhC----------
Confidence            112222222 23999999999999999999999999999999988874    333332222222221111          


Q ss_pred             hhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHH-HHHHHhcCCcccHHHHHHcCCcccccChHHHHHHH
Q 005581          525 YAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVD-KMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIA  603 (690)
Q Consensus       525 ~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~-~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a  603 (690)
                                                                .. ..+.+..|+.++|+||+++||||++...++..+.+
T Consensus       151 ------------------------------------------~~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a  188 (195)
T cd06558         151 ------------------------------------------PARARELLLTGRRISAEEALELGLVDEVVPDEELLAAA  188 (195)
T ss_pred             ------------------------------------------HHHHHHHHHcCCccCHHHHHHcCCCCeecChhHHHHHH
Confidence                                                      11 23446779999999999999999999999999888


Q ss_pred             HHHcC
Q 005581          604 KQKAN  608 (690)
Q Consensus       604 ~~~a~  608 (690)
                      .+++.
T Consensus       189 ~~~a~  193 (195)
T cd06558         189 LELAR  193 (195)
T ss_pred             HHHHh
Confidence            88765

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=99.65  E-value=9e-16  Score=166.45  Aligned_cols=158  Identities=19%  Similarity=0.114  Sum_probs=114.9

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccC-----CCcchhhh---------h---
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDS-----PGGDALAS---------D---  449 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinS-----pGG~~~as---------~---  449 (690)
                      .+.|++|+++.|-.      .|..+..+.++|.+.++++..|++||+|||+...     .|++....         .   
T Consensus        10 ~~~v~~itLnrP~~------~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~   83 (342)
T PRK05617         10 EGGVGVITLNRPKA------LNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAAD   83 (342)
T ss_pred             ECCEEEEEECCCcc------ccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHH
Confidence            36899999998754      2455667889999999999999999999998853     56654220         0   


Q ss_pred             HHH----HHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeee
Q 005581          450 LMW----REIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEII  520 (690)
Q Consensus       450 ~i~----~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i  520 (690)
                      ..+    +.+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.+|.    +|+++.......+.          
T Consensus        84 ~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~----------  153 (342)
T PRK05617         84 RFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLS----------  153 (342)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEeh----------
Confidence            111    111222 33999999999999999999999999999999999884    45444332211110          


Q ss_pred             cccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHH
Q 005581          521 SRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAV  600 (690)
Q Consensus       521 ~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai  600 (690)
                                                                |-......+.+++|+.++|+||+++||||++.+.++..
T Consensus       154 ------------------------------------------r~~g~~a~~llltG~~i~A~eA~~~GLv~~vv~~~~l~  191 (342)
T PRK05617        154 ------------------------------------------RAPGALGTYLALTGARISAADALYAGLADHFVPSADLP  191 (342)
T ss_pred             ------------------------------------------hcccHHHHHHHHcCCCCCHHHHHHcCCcceecCHHHHH
Confidence                                                      00112245667899999999999999999999877655


Q ss_pred             HH
Q 005581          601 AI  602 (690)
Q Consensus       601 ~~  602 (690)
                      ..
T Consensus       192 ~~  193 (342)
T PRK05617        192 AL  193 (342)
T ss_pred             HH
Confidence            44

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=99.65  E-value=3.8e-15  Score=149.42  Aligned_cols=161  Identities=16%  Similarity=0.130  Sum_probs=129.6

Q ss_pred             EEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECcc
Q 005581          392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV  471 (690)
Q Consensus       392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g~  471 (690)
                      +|.+.|+|++           .+++.++.+|-.+..++..+.|.|+||||||++++.-.|++.++..  +.||.+.+.|.
T Consensus        32 iifl~~~i~~-----------~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~--~~~V~Tv~~G~   98 (200)
T CHL00028         32 LLFLGQEVDD-----------EIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGLAIYDTMQFV--KPDVHTICLGL   98 (200)
T ss_pred             EEEECCeecH-----------HHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhc--CCCEEEEEEEe
Confidence            6889999985           4678999999998877777999999999999999999999999987  78999999999


Q ss_pred             ccHHHHHHHHhcC--eEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHH
Q 005581          472 AASGGYYMAMAAG--TILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQ  549 (690)
Q Consensus       472 AaSGGy~iA~aaD--~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~  549 (690)
                      |+|.|..|++++|  +++|.|++.+...-..+..                 ..|.             ..+.+.-.+.++
T Consensus        99 AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~-----------------~~G~-------------a~di~~~a~~l~  148 (200)
T CHL00028         99 AASMASFILAGGEITKRLAFPHARVMIHQPASSF-----------------YEGQ-------------ASEFVLEAEELL  148 (200)
T ss_pred             hHHHHHHHHhCCCCCCEEecCCCeEEEecCccCc-----------------CCCC-------------HHHHHHHHHHHH
Confidence            9999999999999  6999999987643321110                 0121             122233445566


Q ss_pred             HHHHHHHHHHHhhcCCCHHHHHHHhc-CCcccHHHHHHcCCcccccC
Q 005581          550 NAYKLFRDKAAFSRSMTVDKMEEYAQ-GRVWTGNDAASRGLVDALGG  595 (690)
Q Consensus       550 ~~y~~F~~~Va~~R~~~~~~v~~l~~-Grv~tg~eA~e~GLVD~ig~  595 (690)
                      ..-+.+.+..++..|.+.+++++..+ ...+|++||+++||||+|..
T Consensus       149 ~~~~~~~~~ya~~Tg~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~  195 (200)
T CHL00028        149 KLRETITRVYAQRTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAV  195 (200)
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCCcEEee
Confidence            66666677778888999999998777 67779999999999999864

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=99.64  E-value=4.4e-15  Score=157.56  Aligned_cols=166  Identities=17%  Similarity=0.154  Sum_probs=114.5

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh--------------
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS--------------  448 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as--------------  448 (690)
                      .+.|++|+++.+-..      |..+..+.++|.+.++++.+|++||+|||+..    |.|+++...              
T Consensus        11 ~~~Va~ItlnrP~~~------Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~   84 (288)
T PRK08290         11 AGRIARITLNRPEAR------NAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQHP   84 (288)
T ss_pred             eCCEEEEEecCcccc------CCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCcccccccccccccccccc
Confidence            368999999987542      45566788999999999999999999999875    456654210              


Q ss_pred             ------------h--------HHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceeccccccccccchH
Q 005581          449 ------------D--------LMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLG  507 (690)
Q Consensus       449 ------------~--------~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~  507 (690)
                                  .        .+.+.+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.+|.-.+        
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~--------  156 (288)
T PRK08290         85 TLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVV--------  156 (288)
T ss_pred             ccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCccc--------
Confidence                        0        011111222 34999999999999999999999999999999998773111        


Q ss_pred             HHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHc
Q 005581          508 KLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASR  587 (690)
Q Consensus       508 ~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~  587 (690)
                          ++|+.    ..+.                            ..+...|...+     ..+.+++|+.++|+||+++
T Consensus       157 ----~lGl~----~~~~----------------------------~~l~~~iG~~~-----A~~llltG~~i~A~eA~~~  195 (288)
T PRK08290        157 ----RMGIP----GVEY----------------------------FAHPWELGPRK-----AKELLFTGDRLTADEAHRL  195 (288)
T ss_pred             ----ccCcC----cchH----------------------------HHHHHHhhHHH-----HHHHHHcCCCCCHHHHHHC
Confidence                12220    0000                            00011122111     4456788999999999999


Q ss_pred             CCcccccChHHHHHHHHHHc
Q 005581          588 GLVDALGGFSRAVAIAKQKA  607 (690)
Q Consensus       588 GLVD~ig~~~~ai~~a~~~a  607 (690)
                      ||||++...++..+.+.+++
T Consensus       196 GLV~~vv~~~~l~~~a~~~a  215 (288)
T PRK08290        196 GMVNRVVPRDELEAETLELA  215 (288)
T ss_pred             CCccEeeCHHHHHHHHHHHH
Confidence            99999998776665555444

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=99.63  E-value=5.2e-15  Score=147.92  Aligned_cols=160  Identities=14%  Similarity=0.170  Sum_probs=127.1

Q ss_pred             EEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECcc
Q 005581          392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV  471 (690)
Q Consensus       392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g~  471 (690)
                      +|.+.|+|++           .+.+.++..|..+..++..+.|.|+||||||++++...|++.++..  +-||++.+.|.
T Consensus        27 iifl~~~i~~-----------~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~--~~~V~t~~~G~   93 (196)
T PRK12551         27 IIFLGEPVTS-----------DSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHV--KPDVHTVCVGL   93 (196)
T ss_pred             EEEECCeecH-----------HHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhc--CCCEEEEEEEE
Confidence            6788888884           5678999999999877777999999999999999999999999988  67899999999


Q ss_pred             ccHHHHHHHHhcCe--EEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHH
Q 005581          472 AASGGYYMAMAAGT--ILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQ  549 (690)
Q Consensus       472 AaSGGy~iA~aaD~--I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~  549 (690)
                      |+|.|..|++++|+  ++|.|++.+...-..+..                  .|..             .+.+.-.+.++
T Consensus        94 AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~------------------~G~a-------------~di~~~a~~l~  142 (196)
T PRK12551         94 AASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGA------------------RGQA-------------SDIRIQADEIL  142 (196)
T ss_pred             ehhHHHHHHhCCCCCceecCCCCEEEEecCCccc------------------CCCc-------------chHHHHHHHHH
Confidence            99999999999986  899999987643221110                  1111             12223344556


Q ss_pred             HHHHHHHHHHHhhcCCCHHHHHHHhc-CCcccHHHHHHcCCcccccC
Q 005581          550 NAYKLFRDKAAFSRSMTVDKMEEYAQ-GRVWTGNDAASRGLVDALGG  595 (690)
Q Consensus       550 ~~y~~F~~~Va~~R~~~~~~v~~l~~-Grv~tg~eA~e~GLVD~ig~  595 (690)
                      ...+.+.+..++..|.+.+++++..+ ...+|++||+++||||+|..
T Consensus       143 ~~~~~~~~~ya~~tG~~~~~i~~~~~rd~~msa~EA~eyGliD~I~~  189 (196)
T PRK12551        143 FLKERLNTELSERTGQPLERIQEDTDRDFFMSPSEAVEYGLIDLVID  189 (196)
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHhhcCcCCCHHHHHHcCCCcEEec
Confidence            66666666667788999999998777 66679999999999999865

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.62  E-value=2.9e-15  Score=148.33  Aligned_cols=160  Identities=22%  Similarity=0.242  Sum_probs=127.5

Q ss_pred             EEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECcc
Q 005581          392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV  471 (690)
Q Consensus       392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g~  471 (690)
                      +|.+.|+|+.           .++..+++.|..+...+..+-|.|.+|||||++.+.-.|++.|+..  +.||++.+.|.
T Consensus        18 ~i~l~g~I~~-----------~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v~~g~~i~~~i~~~--~~~v~t~~~G~   84 (182)
T PF00574_consen   18 IIFLNGPIDE-----------ESANRLISQLLYLENEDKNKPINIYINSPGGDVDAGLAIYDAIRSS--KAPVTTVVLGL   84 (182)
T ss_dssp             EEEEESSBSH-----------HHHHHHHHHHHHHHHHTSSSEEEEEEEECEBCHHHHHHHHHHHHHS--SSEEEEEEEEE
T ss_pred             EEEECCccCH-----------HHHHHHHHHHHHHhccCCCceEEEEEcCCCCccHHHHHHHHHHHhc--CCCeEEEEeCc
Confidence            6889999984           5678889988888767777899999999999999999999999987  89999999999


Q ss_pred             ccHHHHHHHHhcCe--EEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHH
Q 005581          472 AASGGYYMAMAAGT--ILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQ  549 (690)
Q Consensus       472 AaSGGy~iA~aaD~--I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~  549 (690)
                      |+|+|..|+++|+.  +++.|++.++.........                  |             +..+.+...+.++
T Consensus        85 aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~------------------g-------------~~~~l~~~~~~l~  133 (182)
T PF00574_consen   85 AASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSG------------------G-------------NASELREQAKELE  133 (182)
T ss_dssp             EETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEE------------------E-------------EHHHHHHHHHHHH
T ss_pred             cccceehhhhcCCcCceeeeecCEEEeecceeecc------------------c-------------ccchhHHHHHHHH
Confidence            99999999999999  7999999977543221111                  1             1223334455666


Q ss_pred             HHHHHHHHHHHhhcCCCHHHHHHHhc-CCcccHHHHHHcCCcccccC
Q 005581          550 NAYKLFRDKAAFSRSMTVDKMEEYAQ-GRVWTGNDAASRGLVDALGG  595 (690)
Q Consensus       550 ~~y~~F~~~Va~~R~~~~~~v~~l~~-Grv~tg~eA~e~GLVD~ig~  595 (690)
                      +..+.+.+.+++..|++.+.++..+. ...++++||+++||||+|.+
T Consensus       134 ~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~  180 (182)
T PF00574_consen  134 KLNERIANIYAERTGLSKEEIEELMDRDTWLSAEEALEYGIIDEIIE  180 (182)
T ss_dssp             HHHHHHHHHHHHHHTS-HHHHHHHCSSTEEEEHHHHHHHTSSSEEES
T ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHhCCccccHHHHHHcCCCCEecc
Confidence            66777778888899999999999887 55569999999999999865

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.61  E-value=1e-14  Score=172.29  Aligned_cols=164  Identities=20%  Similarity=0.157  Sum_probs=121.8

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh-------h----HH
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS-------D----LM  451 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as-------~----~i  451 (690)
                      ++.|++|+++.+-.      .|..+..+.++|.++++++..|++||+|||+.+    |.|++....       .    .+
T Consensus        14 ~~~v~~itlnrp~~------~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~   87 (715)
T PRK11730         14 EDGIAELVFDAPGS------VNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQW   87 (715)
T ss_pred             CCCEEEEEEcCCCC------CCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHH
Confidence            37899999998654      245667788999999999999999999999875    466665220       0    11


Q ss_pred             H----HHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecc
Q 005581          452 W----REIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISR  522 (690)
Q Consensus       452 ~----~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~  522 (690)
                      .    +.+..+ ..+|||||+|+|.|.|||+.||++||++||++.+.+|.    +|+++.......+...+|.       
T Consensus        88 ~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~-------  160 (715)
T PRK11730         88 LHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGA-------  160 (715)
T ss_pred             HHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCH-------
Confidence            1    122223 34999999999999999999999999999999999883    5665554444333333332       


Q ss_pred             cchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHH
Q 005581          523 GKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAI  602 (690)
Q Consensus       523 g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~  602 (690)
                                                             .     .+.+.+++|+.++|+||+++||||++...++.++.
T Consensus       161 ---------------------------------------~-----~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~  196 (715)
T PRK11730        161 ---------------------------------------D-----NALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEA  196 (715)
T ss_pred             ---------------------------------------H-----HHHHHHHcCCcCCHHHHHHCCCCeEecCHHHHHHH
Confidence                                                   1     13456788999999999999999999987766666


Q ss_pred             HHHHc
Q 005581          603 AKQKA  607 (690)
Q Consensus       603 a~~~a  607 (690)
                      +.+++
T Consensus       197 a~~~a  201 (715)
T PRK11730        197 ALALL  201 (715)
T ss_pred             HHHHH
Confidence            55555

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=1.3e-14  Score=157.51  Aligned_cols=173  Identities=17%  Similarity=0.233  Sum_probs=138.8

Q ss_pred             ccccccCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcC
Q 005581          132 PWERVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSG  211 (690)
Q Consensus       132 p~~~~~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sg  211 (690)
                      ++....++.|++++++|+|..         .+.+.+.+.|+.|.+ .+-.+|+|.+|+|||-+..+.+|.++|.   ++.
T Consensus        19 ~~~~~~~~~v~vi~i~g~I~~---------~s~~~l~r~l~~A~~-~~a~~vvl~ldTPGGl~~sm~~iv~~i~---~s~   85 (436)
T COG1030          19 PSVATAEKKVYVIEIDGAIDP---------ASADYLQRALQSAEE-ENAAAVVLELDTPGGLLDSMRQIVRAIL---NSP   85 (436)
T ss_pred             ccccccCCeEEEEEecCccCH---------HHHHHHHHHHHHHHh-CCCcEEEEEecCCCchHHHHHHHHHHHH---cCC
Confidence            334446789999999999987         457889999999975 5788999999999999998888877777   889


Q ss_pred             CeEEEEec----CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCC
Q 005581          212 KFIIGYVP----VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMS  287 (690)
Q Consensus       212 KpVvAy~~----~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S  287 (690)
                      .||+.|+.    .|+|+|.||+.+||.++|.|++.+|+.-+....                         +     +...
T Consensus        86 vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~-------------------------g-----~~~~  135 (436)
T COG1030          86 VPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGG-------------------------G-----TSAK  135 (436)
T ss_pred             CCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCC-------------------------C-----CCcc
Confidence            99999985    489999999999999999999999988552111                         0     1112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhc-CcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581          288 EENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFIND-GVYKVERLKEEGFITNVLYDDEVISMLKER  356 (690)
Q Consensus       288 ~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~-~v~~a~eAl~~GLID~i~~~de~~~~l~~~  356 (690)
                      +++       .-+-+..++...|+.||.+.+..+++++. ..++++||++.|+||-+..  ++.+.+++.
T Consensus       136 ~~~-------~~n~~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~--~~~ell~~~  196 (436)
T COG1030         136 EAN-------TTNAAVAYIRSLAEERGRNPTWAERFVTENLSLTAEEALRQGVIDLIAR--DLNELLKKL  196 (436)
T ss_pred             chh-------hHHHHHHHHHHHHHHcCCChHHHHHHhhhccCCChhHHHhcCccccccC--CHHHHHHHc
Confidence            221       44566789999999999999999999875 6899999999999999965  444444443

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=99.60  E-value=1.1e-14  Score=159.90  Aligned_cols=166  Identities=16%  Similarity=0.090  Sum_probs=119.8

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh-------hH----H
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS-------DL----M  451 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as-------~~----i  451 (690)
                      .+.|++|+++.+-..      |..+..+..+|.+.++.+..|++||+|||+.+    |.||++...       +.    +
T Consensus        18 ~~~v~~ItLnrP~~~------Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~   91 (379)
T PLN02874         18 KGRVRVITLNRPRQL------NVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVV   91 (379)
T ss_pred             ECCEEEEEECCCccc------cCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHHHHH
Confidence            367999999987652      45567789999999999999999999999875    466765321       11    1


Q ss_pred             HH---HHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeeccc
Q 005581          452 WR---EIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRG  523 (690)
Q Consensus       452 ~~---~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g  523 (690)
                      .+   .+..+ .-+|||||.|+|.|+|||+.|+++||++||++++.+|.    +|+++.......+.             
T Consensus        92 ~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~-------------  158 (379)
T PLN02874         92 YRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILS-------------  158 (379)
T ss_pred             HHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHH-------------
Confidence            11   11222 33999999999999999999999999999999999873    55544332211111             


Q ss_pred             chhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHH
Q 005581          524 KYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIA  603 (690)
Q Consensus       524 ~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a  603 (690)
                                                       ..+.      ....+.+++|+.++|+||+++||||++...+++.+.+
T Consensus       159 ---------------------------------rl~g------~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~  199 (379)
T PLN02874        159 ---------------------------------RLPG------HLGEYLALTGARLNGKEMVACGLATHFVPSEKLPELE  199 (379)
T ss_pred             ---------------------------------hhhH------HHHHHHHHcCCcccHHHHHHcCCccEEeCHHHHHHHH
Confidence                                             0001      1133557889999999999999999999988877755


Q ss_pred             HHHcCCC
Q 005581          604 KQKANIP  610 (690)
Q Consensus       604 ~~~a~l~  610 (690)
                      .+++.++
T Consensus       200 ~~l~~l~  206 (379)
T PLN02874        200 KRLLNLN  206 (379)
T ss_pred             HHHHhcC
Confidence            5555444

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=99.60  E-value=1.9e-14  Score=144.21  Aligned_cols=161  Identities=17%  Similarity=0.197  Sum_probs=124.8

Q ss_pred             EEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECcc
Q 005581          392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV  471 (690)
Q Consensus       392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g~  471 (690)
                      +|.+.|+|++           .+++.++..|..+..++.-+-|.|+||||||++++.-.|++.++..  +-||.+.+.|.
T Consensus        29 iifl~~~i~~-----------~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~GlaIyd~m~~~--~~~V~Ti~~G~   95 (201)
T PRK14513         29 IIFVGTPIES-----------QMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLAIYDTMRYI--KAPVSTICVGI   95 (201)
T ss_pred             EEEECCEEcH-----------HHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhhHHHHHHHHHhc--CCCEEEEEEee
Confidence            5778888884           4578899999888887777899999999999999999999999988  67899999999


Q ss_pred             ccHHHHHHHHhcCe--EEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHH
Q 005581          472 AASGGYYMAMAAGT--ILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQ  549 (690)
Q Consensus       472 AaSGGy~iA~aaD~--I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~  549 (690)
                      |+|.|..|+++||+  ++|.|++.+...-.....                  .|...             +.+...+.++
T Consensus        96 AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~------------------~G~a~-------------di~~~a~el~  144 (201)
T PRK14513         96 AMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGF------------------RGNTP-------------DLEVQAKEVL  144 (201)
T ss_pred             ehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCC------------------CCCHH-------------HHHHHHHHHH
Confidence            99999999999996  899999986532211100                  12112             2223333444


Q ss_pred             HHHHHHHHHHHhhcCCCHHHHHHHhc-CCcccHHHHHHcCCcccccCh
Q 005581          550 NAYKLFRDKAAFSRSMTVDKMEEYAQ-GRVWTGNDAASRGLVDALGGF  596 (690)
Q Consensus       550 ~~y~~F~~~Va~~R~~~~~~v~~l~~-Grv~tg~eA~e~GLVD~ig~~  596 (690)
                      ..-+.+.+..++..|.+.+++++.+. ...+|++||+++||||+|...
T Consensus       145 ~~~~~l~~iya~~Tg~~~~~I~~~~~rd~~msa~EA~eyGliD~I~~~  192 (201)
T PRK14513        145 FLRDTLVDIYHRHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSVIEP  192 (201)
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHhccCcccCHHHHHHcCCCcEEecc
Confidence            45555555557777899999998877 666799999999999999653

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=99.60  E-value=1.4e-14  Score=155.73  Aligned_cols=154  Identities=18%  Similarity=0.169  Sum_probs=111.6

Q ss_pred             cEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-----CCCcchhhh--------h---HH-
Q 005581          389 QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALAS--------D---LM-  451 (690)
Q Consensus       389 ~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-----SpGG~~~as--------~---~i-  451 (690)
                      .+++|+++.+-..      |+.+..+..+|.+.++++..|++|++|||+..     |.|++...-        .   .+ 
T Consensus        37 ~~A~ItLNRP~k~------NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~  110 (360)
T TIGR03200        37 YNAWIILDNPKQY------NSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYM  110 (360)
T ss_pred             EEEEEEECCCCcc------CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHH
Confidence            3566888887542      45566789999999999999999999999874     345543210        0   01 


Q ss_pred             ---HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeeccc
Q 005581          452 ---WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRG  523 (690)
Q Consensus       452 ---~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g  523 (690)
                         .+.++.+ ..+|||||.|+|.|.|||+.|+++||++||++.+.+|.    +|+++.......+...+|.        
T Consensus       111 ~~~~~l~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~--------  182 (360)
T TIGR03200       111 RLFNDMVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGC--------  182 (360)
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCH--------
Confidence               1222223 23999999999999999999999999999999999883    5555444433333322332        


Q ss_pred             chhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHH
Q 005581          524 KYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRA  599 (690)
Q Consensus       524 ~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~a  599 (690)
                                                            .|     ..+.+++|+.|+|+||+++||||++.+.++.
T Consensus       183 --------------------------------------~r-----A~~llltGe~~sA~EA~~~GLVd~VVp~~~~  215 (360)
T TIGR03200       183 --------------------------------------EQ-----AMVSGTLCEPWSAHKAKRLGIIMDVVPALKV  215 (360)
T ss_pred             --------------------------------------HH-----HHHHHHhCCcCcHHHHHHcCChheecCchhc
Confidence                                                  12     3455788999999999999999999876654

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=99.60  E-value=1.7e-14  Score=145.78  Aligned_cols=161  Identities=13%  Similarity=0.103  Sum_probs=132.0

Q ss_pred             EEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-Cc
Q 005581          143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC  221 (690)
Q Consensus       143 vI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~-~a  221 (690)
                      +|.|.|+|.+.         +..++++.|..+...+..+.|+|.||||||++.....|+++|+.++   .||++++. .|
T Consensus        37 ~I~l~g~I~~~---------~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~g~~I~d~i~~~~---~~v~t~~~G~a  104 (207)
T PRK12553         37 IIFLGGQVDDA---------SANDVMAQLLVLESIDPDRDITLYINSPGGSVTAGDAIYDTIQFIR---PDVQTVCTGQA  104 (207)
T ss_pred             EEEEcceECHH---------HHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcC---CCcEEEEEeeh
Confidence            47888999874         3578999999998877789999999999999999999999999764   58999997 79


Q ss_pred             chhhhHHhhccC--eeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHH
Q 005581          222 GEKEYYLACACE--ELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD  299 (690)
Q Consensus       222 as~gY~LAsaaD--~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld  299 (690)
                      +|+|.+|+++||  ++||.|.+.++++.+....                           +.   .-+..+.+.....++
T Consensus       105 aSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~---------------------------~~---~G~a~d~~~~~~~l~  154 (207)
T PRK12553        105 ASAGAVLLAAGTPGKRFALPNARILIHQPSLGG---------------------------GI---RGQASDLEIQAREIL  154 (207)
T ss_pred             hhHHHHHHHcCCcCcEEECCCchhhhcCccccC---------------------------CC---ccCHHHHHHHHHHHH
Confidence            999999999999  5899999999999662100                           00   012223333445677


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHhc-CcccHHHHHhcCCeeEecc
Q 005581          300 NIYGNWLDKVSSTKGKRKEDIERFIND-GVYKVERLKEEGFITNVLY  345 (690)
Q Consensus       300 ~~~~~f~~~Va~~Rg~~~~~v~~~~~~-~v~~a~eAl~~GLID~i~~  345 (690)
                      .+.+.|.+.+++.+|++.+.+++.++. ..++++||+++||||+|..
T Consensus       155 ~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~  201 (207)
T PRK12553        155 RMRERLERILAEHTGQSVEKIRKDTDRDKWLTAEEAKDYGLVDQIIT  201 (207)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHhcCccccHHHHHHcCCccEEcC
Confidence            888999999999999999999998865 5779999999999999964

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=99.59  E-value=3.2e-14  Score=146.08  Aligned_cols=161  Identities=17%  Similarity=0.179  Sum_probs=110.1

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhh-------hhHHH---
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALA-------SDLMW---  452 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~a-------s~~i~---  452 (690)
                      ++.|++|+++.+ .      .|..+..+.++|.+.+.++.  +++|+|||+.+    |.|++...       ...++   
T Consensus        10 ~~~v~~itln~~-~------~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~   80 (229)
T PRK06213         10 EDGVATITLDDG-K------VNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSGAQAAIALLTAG   80 (229)
T ss_pred             cCCEEEEEeCCC-C------CCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcchHhHHHHHHHH
Confidence            368999999975 2      24556677899999999887  56799999875    35555421       11121   


Q ss_pred             -HHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecC-ceecc----ccccccccchHHHHHHcCCceeeecccch
Q 005581          453 -REIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENL-TLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKY  525 (690)
Q Consensus       453 -~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~-t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~  525 (690)
                       +.++.+ .-+|||||+++|.|.|||+.|+++||++||++. +.+|.    +|+.+.......+..++|           
T Consensus        81 ~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g-----------  149 (229)
T PRK06213         81 STLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLT-----------  149 (229)
T ss_pred             HHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcC-----------
Confidence             222223 349999999999999999999999999999998 77663    222211111111111111           


Q ss_pred             hhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHH-HHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHH
Q 005581          526 AEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVD-KMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAK  604 (690)
Q Consensus       526 ~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~-~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~  604 (690)
                                                               .. ..+.+++|+.++|+||+++||||++.+.++..+.+.
T Consensus       150 -----------------------------------------~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~  188 (229)
T PRK06213        150 -----------------------------------------PSAFQRAVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQ  188 (229)
T ss_pred             -----------------------------------------HHHHHHHHHcCcccCHHHHHHCCCceeccChHHHHHHHH
Confidence                                                     11 224468899999999999999999998777666666


Q ss_pred             HHcC
Q 005581          605 QKAN  608 (690)
Q Consensus       605 ~~a~  608 (690)
                      +++.
T Consensus       189 ~~a~  192 (229)
T PRK06213        189 AAAR  192 (229)
T ss_pred             HHHH
Confidence            5554

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=99.58  E-value=3e-14  Score=167.98  Aligned_cols=165  Identities=21%  Similarity=0.201  Sum_probs=124.8

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh--------h---HH
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS--------D---LM  451 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as--------~---~i  451 (690)
                      .+.|++|+++.+-.      .|..+..+.++|.++++++..|++||+|||+.+    |.|+++...        +   .+
T Consensus        14 ~~gva~Itlnrp~~------~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   87 (714)
T TIGR02437        14 EDGIAELKFDAPGS------VNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQW   87 (714)
T ss_pred             cCCEEEEEECCCCC------CCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHHH
Confidence            36899999998643      245667788999999999999999999999875    456655211        0   11


Q ss_pred             ----HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecc
Q 005581          452 ----WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISR  522 (690)
Q Consensus       452 ----~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~  522 (690)
                          .+.+..+ ..+|||||.|+|.|.|||+.|+++||++||++.+.+|.    +|++++......+...+|.       
T Consensus        88 ~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~-------  160 (714)
T TIGR02437        88 LLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGA-------  160 (714)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCH-------
Confidence                1122222 34999999999999999999999999999999999883    6666665554444433333       


Q ss_pred             cchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHH
Q 005581          523 GKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAI  602 (690)
Q Consensus       523 g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~  602 (690)
                                                             .     ...+.+++|+.++++||+++||||++...++..+.
T Consensus       161 ---------------------------------------~-----~A~~llltG~~~~A~eA~~~GLvd~vv~~~~l~~~  196 (714)
T TIGR02437       161 ---------------------------------------D-----NALEWIASGKENRAEDALKVGAVDAVVTADKLGAA  196 (714)
T ss_pred             ---------------------------------------H-----HHHHHHHcCCcCCHHHHHHCCCCcEeeChhHHHHH
Confidence                                                   1     13456788999999999999999999988877777


Q ss_pred             HHHHcC
Q 005581          603 AKQKAN  608 (690)
Q Consensus       603 a~~~a~  608 (690)
                      |.+++.
T Consensus       197 a~~~a~  202 (714)
T TIGR02437       197 ALQLLK  202 (714)
T ss_pred             HHHHHH
Confidence            777663

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=99.58  E-value=7.3e-14  Score=140.08  Aligned_cols=164  Identities=12%  Similarity=0.086  Sum_probs=128.5

Q ss_pred             EEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-Cc
Q 005581          143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC  221 (690)
Q Consensus       143 vI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~-~a  221 (690)
                      +|.|.|+|.+.         ....|++.|..+...+..+.|+|.||||||.+.....|+++|+.+   ..||++++. .|
T Consensus        25 ~I~i~g~I~~~---------~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~ag~aI~d~i~~~---~~~V~t~v~G~A   92 (197)
T PRK14512         25 SIVIAGEINKD---------LSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAIFNMIRFV---KPKVFTIGVGLV   92 (197)
T ss_pred             EEEECCEEcHH---------HHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHhC---CCCEEEEEEeee
Confidence            56778999874         246789999888764567899999999999999999999999965   468999998 79


Q ss_pred             chhhhHHhhccCe--eEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHH
Q 005581          222 GEKEYYLACACEE--LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD  299 (690)
Q Consensus       222 as~gY~LAsaaD~--I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld  299 (690)
                      +|+|.+|+++||+  .|+.|++.++++.+....                               .+ +..+-+...+.++
T Consensus        93 aSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~-------------------------------~G-~a~di~~~a~~l~  140 (197)
T PRK14512         93 ASAAALIFLAAKKESRFSLPNARYLLHQPLSGF-------------------------------KG-VATDIEIYANELN  140 (197)
T ss_pred             HhHHHHHHhcCCcCceeECCCCcEEEEcCcccc-------------------------------cc-CHHHHHHHHHHHH
Confidence            9999999999996  789999999998552110                               01 1111122223456


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHhcC-cccHHHHHhcCCeeEecc-hhHHH
Q 005581          300 NIYGNWLDKVSSTKGKRKEDIERFINDG-VYKVERLKEEGFITNVLY-DDEVI  350 (690)
Q Consensus       300 ~~~~~f~~~Va~~Rg~~~~~v~~~~~~~-v~~a~eAl~~GLID~i~~-~de~~  350 (690)
                      .+.+.+.+.+++.+|++.+.+++.++.. .++++||+++||||+|.. .+++.
T Consensus       141 ~~~~~i~~~~a~~tg~~~~~i~~~~~~d~~lta~EA~~yGliD~I~~~~~~l~  193 (197)
T PRK14512        141 KVKSELNDIIAKETGQELDKVEKDTDRDFWLDSSSAVKYGLVFEVVETRLELE  193 (197)
T ss_pred             HHHHHHHHHHHHHhCcCHHHHHHhhhcCcccCHHHHHHcCCccEeecCcHHhH
Confidence            7777888889999999999999998875 559999999999999964 34443

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=99.57  E-value=7.3e-14  Score=144.40  Aligned_cols=163  Identities=19%  Similarity=0.219  Sum_probs=110.1

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCce-EEEEEcc----CCCcchhhh-------h---HH
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYK-AAIIRID----SPGGDALAS-------D---LM  451 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~Vk-aVVLrin----SpGG~~~as-------~---~i  451 (690)
                      ++.|++|+++.+-.       |..+..+.++|.+.++++.+|++++ +||++.+    |.|++....       +   ..
T Consensus         7 ~~~v~~i~Lnrp~~-------Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~   79 (239)
T PLN02267          7 RGNLFILTLTGDGE-------HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLM   79 (239)
T ss_pred             cCCEEEEEeCCCCc-------CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHH
Confidence            46899999998732       2345567899999999999999976 5666654    566664210       0   11


Q ss_pred             ----HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEec-Cceecc----cccc-ccccchHHHHHHcCCceeee
Q 005581          452 ----WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAEN-LTLTGS----IGVV-TGKFNLGKLYEKIGFNKEII  520 (690)
Q Consensus       452 ----~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p-~t~~GS----IGv~-~~~~~~~~l~~klGi~~~~i  520 (690)
                          .+.+..+ .-+|||||.|+|.|.|||+.|+++||++||++ .+.++.    +|+. +.. ....+..++|.     
T Consensus        80 ~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~-~~~~l~~~vG~-----  153 (239)
T PLN02267         80 VAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDY-FMALLRAKIGS-----  153 (239)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChH-HHHHHHHHcCh-----
Confidence                1122223 34999999999999999999999999999985 567662    4442 211 11112112221     


Q ss_pred             cccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHH-HHHHhcCCcccHHHHHHcCCcccccC-hHH
Q 005581          521 SRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDK-MEEYAQGRVWTGNDAASRGLVDALGG-FSR  598 (690)
Q Consensus       521 ~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~-v~~l~~Grv~tg~eA~e~GLVD~ig~-~~~  598 (690)
                                                                    ... .+.+++|+.++|+||+++||||++.+ .++
T Consensus       154 ----------------------------------------------~~a~~~llltG~~~~a~eA~~~Glv~~vv~~~~~  187 (239)
T PLN02267        154 ----------------------------------------------PAARRDVLLRAAKLTAEEAVEMGIVDSAHDSAEE  187 (239)
T ss_pred             ----------------------------------------------HHHHHHHHHcCCcCCHHHHHHCCCcceecCCHHH
Confidence                                                          112 24578899999999999999999986 456


Q ss_pred             HHHHHHHHcC
Q 005581          599 AVAIAKQKAN  608 (690)
Q Consensus       599 ai~~a~~~a~  608 (690)
                      +++.+.++|.
T Consensus       188 l~~~a~~~A~  197 (239)
T PLN02267        188 TVEAAVRLGE  197 (239)
T ss_pred             HHHHHHHHHH
Confidence            6666655553

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=99.57  E-value=3.4e-14  Score=167.36  Aligned_cols=166  Identities=20%  Similarity=0.234  Sum_probs=122.2

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEE-c----cCCCcchhhh---------hHHH
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIR-I----DSPGGDALAS---------DLMW  452 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLr-i----nSpGG~~~as---------~~i~  452 (690)
                      .+.|++|+++.+-..     .|..+..+.++|.+.|+++.+|++||+|||. .    .|.|++....         ..+.
T Consensus         8 ~~~Va~itlnrp~~~-----~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~   82 (699)
T TIGR02440         8 EDGIAILTIDVPGEK-----MNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALA   82 (699)
T ss_pred             CCCEEEEEECCCCCC-----CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHH
Confidence            468999999987211     2456667889999999999999999999973 3    2566665321         0111


Q ss_pred             ----HHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecC--ceec----cccccccccchHHHHHHcCCceeeec
Q 005581          453 ----REIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENL--TLTG----SIGVVTGKFNLGKLYEKIGFNKEIIS  521 (690)
Q Consensus       453 ----~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~--t~~G----SIGv~~~~~~~~~l~~klGi~~~~i~  521 (690)
                          +.+..+ ..+|||||.|+|.|.|||+.|+++||++||+++  +.+|    .+|+++.......+...+|.      
T Consensus        83 ~~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~------  156 (699)
T TIGR02440        83 QQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGV------  156 (699)
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCH------
Confidence                122223 339999999999999999999999999999986  5777    35655555444333333332      


Q ss_pred             ccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHH
Q 005581          522 RGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVA  601 (690)
Q Consensus       522 ~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~  601 (690)
                                                              .     ...+.+++|+.++++||+++||||++...+++++
T Consensus       157 ----------------------------------------~-----~A~~llltG~~~~a~eA~~~GLV~~vv~~~~l~~  191 (699)
T TIGR02440       157 ----------------------------------------S-----TALDMILTGKQLRAKQALKLGLVDDVVPQSILLD  191 (699)
T ss_pred             ----------------------------------------H-----HHHHHHHcCCcCCHHHHHhCCCCcEecChhHHHH
Confidence                                                    1     1345678899999999999999999999988888


Q ss_pred             HHHHHcC
Q 005581          602 IAKQKAN  608 (690)
Q Consensus       602 ~a~~~a~  608 (690)
                      .|.++|.
T Consensus       192 ~a~~~A~  198 (699)
T TIGR02440       192 TAVEMAL  198 (699)
T ss_pred             HHHHHHH
Confidence            8888885

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=99.57  E-value=4.3e-14  Score=155.66  Aligned_cols=155  Identities=17%  Similarity=0.115  Sum_probs=115.1

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh---------h---H
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS---------D---L  450 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as---------~---~  450 (690)
                      .+.|++|++|.|-..      |..+..+..+|.++|+.+.+|++||+|||+..    |.||++..-         +   .
T Consensus        44 ~g~v~~ItLNRP~~l------NALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~  117 (401)
T PLN02157         44 SGCSRTAILNRPPAL------NALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIRE  117 (401)
T ss_pred             ECCEEEEEECCCCcc------CCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHHHH
Confidence            368999999998653      55667789999999999999999999999875    577876321         0   1


Q ss_pred             HH----HHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeec
Q 005581          451 MW----REIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIIS  521 (690)
Q Consensus       451 i~----~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~  521 (690)
                      .+    +.+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.++.    ||+++.......|....|       
T Consensus       118 ~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G-------  190 (401)
T PLN02157        118 FFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPG-------  190 (401)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhh-------
Confidence            11    111222 23999999999999999999999999999999999884    665554433222211111       


Q ss_pred             ccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHH
Q 005581          522 RGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRA  599 (690)
Q Consensus       522 ~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~a  599 (690)
                                                                   ....+.+++|+.++|+||+++||||++...++.
T Consensus       191 ---------------------------------------------~~a~~L~LTG~~i~A~eA~~~GLv~~vVp~~~l  223 (401)
T PLN02157        191 ---------------------------------------------RLGEYLGLTGLKLSGAEMLACGLATHYIRSEEI  223 (401)
T ss_pred             ---------------------------------------------HHHHHHHHcCCcCCHHHHHHcCCceEEeCHhHH
Confidence                                                         113355688999999999999999999876653

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=99.56  E-value=3.5e-14  Score=155.66  Aligned_cols=165  Identities=15%  Similarity=0.108  Sum_probs=121.1

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhhh------------H
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALASD------------L  450 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as~------------~  450 (690)
                      .+.|++|+++.+-.      .|..+..+.++|.++|+++.+|++|++|||+.+    |.||++..-.            .
T Consensus        16 ~~~i~~ItLnRP~~------lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~   89 (381)
T PLN02988         16 KSSVRILTLNRPKQ------LNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGAN   89 (381)
T ss_pred             ECCEEEEEECCCCc------cCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHH
Confidence            36899999998865      255667789999999999999999999999875    4677663210            1


Q ss_pred             HH----HHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeec
Q 005581          451 MW----REIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIIS  521 (690)
Q Consensus       451 i~----~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~  521 (690)
                      ++    .....+ .-+|||||.|+|.|.|||+.|+++||++||++.+.++.    ||+++.......+....|       
T Consensus        90 ~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G-------  162 (381)
T PLN02988         90 FFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPG-------  162 (381)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHH-------
Confidence            11    111112 23999999999999999999999999999999999873    565544433222211111       


Q ss_pred             ccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHH
Q 005581          522 RGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVA  601 (690)
Q Consensus       522 ~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~  601 (690)
                                                                   ......+++|+.++|++|+++||||++...++..+
T Consensus       163 ---------------------------------------------~~~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~  197 (381)
T PLN02988        163 ---------------------------------------------FFGEYVGLTGARLDGAEMLACGLATHFVPSTRLTA  197 (381)
T ss_pred             ---------------------------------------------HHHHHHHHcCCCCCHHHHHHcCCceEecCHhHHHH
Confidence                                                         01234568899999999999999999998877777


Q ss_pred             HHHHHcCC
Q 005581          602 IAKQKANI  609 (690)
Q Consensus       602 ~a~~~a~l  609 (690)
                      .+.+++.+
T Consensus       198 ~~~~la~~  205 (381)
T PLN02988        198 LEADLCRI  205 (381)
T ss_pred             HHHHHHHh
Confidence            66666654

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.54  E-value=9.6e-14  Score=163.92  Aligned_cols=167  Identities=22%  Similarity=0.276  Sum_probs=122.8

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-----CCCcchhhh---------hHHH
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALAS---------DLMW  452 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-----SpGG~~~as---------~~i~  452 (690)
                      .+.|++|+++.+-..     .|..+..+.++|.+.++++..|++||+|||+..     |.|+++..-         ..+.
T Consensus        13 ~~~va~itlnrp~~~-----~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~   87 (708)
T PRK11154         13 EDNIAVITIDVPGEK-----MNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALA   87 (708)
T ss_pred             CCCEEEEEECCCCCC-----CcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHH
Confidence            478999999987211     245567788999999999999999999999752     466655210         1111


Q ss_pred             H----HHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCc--eecc----ccccccccchHHHHHHcCCceeeec
Q 005581          453 R----EIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLT--LTGS----IGVVTGKFNLGKLYEKIGFNKEIIS  521 (690)
Q Consensus       453 ~----~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t--~~GS----IGv~~~~~~~~~l~~klGi~~~~i~  521 (690)
                      +    .+..+ .-+|||||.|+|.|.|||+.|+++||++||++++  .+|.    +|+++.......+...+|.      
T Consensus        88 ~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~------  161 (708)
T PRK11154         88 RQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGV------  161 (708)
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCH------
Confidence            1    22233 3499999999999999999999999999999974  7773    5665554444334333332      


Q ss_pred             ccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHH
Q 005581          522 RGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVA  601 (690)
Q Consensus       522 ~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~  601 (690)
                                                              .     ...+.+++|+.++++||+++||||++...+++++
T Consensus       162 ----------------------------------------~-----~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~  196 (708)
T PRK11154        162 ----------------------------------------S-----TALDMILTGKQLRAKQALKLGLVDDVVPHSILLE  196 (708)
T ss_pred             ----------------------------------------H-----HHHHHHHhCCcCCHHHHHHCCCCcEecChHHHHH
Confidence                                                    1     1345678899999999999999999999888888


Q ss_pred             HHHHHcCC
Q 005581          602 IAKQKANI  609 (690)
Q Consensus       602 ~a~~~a~l  609 (690)
                      .|.++|.-
T Consensus       197 ~a~~~A~~  204 (708)
T PRK11154        197 VAVELAKK  204 (708)
T ss_pred             HHHHHHHh
Confidence            88888753

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=99.54  E-value=1.3e-13  Score=157.49  Aligned_cols=175  Identities=18%  Similarity=0.158  Sum_probs=116.9

Q ss_pred             CCcEEEEEeeccc----ccCCCCCCCCCcchHHHHHHHHHHHHH-hCCCceEEEEEcc-----CCCcchhhhh-------
Q 005581          387 GDQIAVIRASGSI----SRVRSPLSLSSSGIIGEQLIEKIRKVR-ESKRYKAAIIRID-----SPGGDALASD-------  449 (690)
Q Consensus       387 ~~~IAvI~i~G~I----~~~~~~~~~~~~~~~~~~l~~~l~~a~-~D~~VkaVVLrin-----SpGG~~~as~-------  449 (690)
                      .+.|++|+++.+-    .+......|..+..+.++|.++++++. +|++||+|||+.+     |.|+++....       
T Consensus        22 ~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~  101 (550)
T PRK08184         22 DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWK  101 (550)
T ss_pred             eCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchh
Confidence            3689999999642    221001235566778899999999998 7999999999864     4666543210       


Q ss_pred             -HH---HH----HH-HHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecC--ceecc-----ccccccccchHHHHHH
Q 005581          450 -LM---WR----EI-RLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENL--TLTGS-----IGVVTGKFNLGKLYEK  512 (690)
Q Consensus       450 -~i---~~----~I-~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~--t~~GS-----IGv~~~~~~~~~l~~k  512 (690)
                       ..   .+    .+ +.+ .-+|||||.|+|.|.|||+.|+++||++|+++.  +.+|.     +|+++.......+   
T Consensus       102 ~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P~~gg~~rl---  178 (550)
T PRK08184        102 VNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRV---  178 (550)
T ss_pred             hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCCCcchHHHh---
Confidence             00   01    11 111 239999999999999999999999999999986  66663     3444333222111   


Q ss_pred             cCCceeeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHH-HHHhcCCcccHHHHHHcCCcc
Q 005581          513 IGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKM-EEYAQGRVWTGNDAASRGLVD  591 (690)
Q Consensus       513 lGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v-~~l~~Grv~tg~eA~e~GLVD  591 (690)
                                                                     ...|.+..... +.+++|+.++|+||+++||||
T Consensus       179 -----------------------------------------------~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd  211 (550)
T PRK08184        179 -----------------------------------------------TDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVD  211 (550)
T ss_pred             -----------------------------------------------hhhhhcCHHHHHHHHHhCCcccHHHHHHcCCcc
Confidence                                                           11123333333 345789999999999999999


Q ss_pred             cccChHHHHH----HHHHHcCCCC
Q 005581          592 ALGGFSRAVA----IAKQKANIPE  611 (690)
Q Consensus       592 ~ig~~~~ai~----~a~~~a~l~~  611 (690)
                      ++...+++.+    .|.+++..++
T Consensus       212 ~vv~~d~l~~~a~~~A~~ia~~~~  235 (550)
T PRK08184        212 EVVKPSKFDAKVAERAAELAAASD  235 (550)
T ss_pred             EeeCHHHHHHHHHHHHHHHHhCCC
Confidence            9998665544    4566665543

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=99.54  E-value=1.8e-13  Score=136.71  Aligned_cols=160  Identities=17%  Similarity=0.148  Sum_probs=126.5

Q ss_pred             EEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-C
Q 005581          142 LTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-V  220 (690)
Q Consensus       142 lvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~-~  220 (690)
                      -+|-+.|+|.+..         ..+++..|..+..++..+.|+|.||||||.+.....|++.|+..+   .||.+++. .
T Consensus        27 riI~l~g~I~~~~---------~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~g~~I~d~l~~~~---~~v~t~~~G~   94 (191)
T TIGR00493        27 RIIFLSGEVNDSV---------ANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIYDTMQFIK---PDVSTICIGQ   94 (191)
T ss_pred             eEEEEccEEChHH---------HHHHHHHHHHhhccCCCCCEEEEEECCCCCHHHHHHHHHHHHhcC---CCEEEEEEEe
Confidence            3577899998643         467889998888877788899999999999999999999999764   46777776 7


Q ss_pred             cchhhhHHhhccC--eeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHH
Q 005581          221 CGEKEYYLACACE--ELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALL  298 (690)
Q Consensus       221 aas~gY~LAsaaD--~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~l  298 (690)
                      |+|.|.+|+++++  +++|.|++.++++.+...                              . .+-.. +.+...+.+
T Consensus        95 AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~------------------------------~-~G~a~-d~~~~a~~l  142 (191)
T TIGR00493        95 AASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGG------------------------------A-QGQAS-DIEIQANEI  142 (191)
T ss_pred             eccHHHHHHhcCCCCcEEecCCceEEEecCccc------------------------------c-cCCcc-hhHHHHHHH
Confidence            8999999999876  589999999999966210                              0 01111 122234567


Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHhcC-cccHHHHHhcCCeeEecc
Q 005581          299 DNIYGNWLDKVSSTKGKRKEDIERFINDG-VYKVERLKEEGFITNVLY  345 (690)
Q Consensus       299 d~~~~~f~~~Va~~Rg~~~~~v~~~~~~~-v~~a~eAl~~GLID~i~~  345 (690)
                      +.+.+.+.+.+++..|++.+.+++.++.. .++++||+++||||+|..
T Consensus       143 ~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~ii~  190 (191)
T TIGR00493       143 LRLKGLLNDILANHTGQSLEQIEKDTERDFFMSAEEAKEYGLIDSVLT  190 (191)
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHhhCCccCcHHHHHHcCCccEEec
Confidence            77888888889999999999999998875 559999999999999864

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=99.54  E-value=1.4e-13  Score=156.75  Aligned_cols=172  Identities=17%  Similarity=0.165  Sum_probs=116.0

Q ss_pred             CcEEEEEeecccccCCCC----CCCCCcchHHHHHHHHHHHHH-hCCCceEEEEEcc-----CCCcchhhh--------h
Q 005581          388 DQIAVIRASGSISRVRSP----LSLSSSGIIGEQLIEKIRKVR-ESKRYKAAIIRID-----SPGGDALAS--------D  449 (690)
Q Consensus       388 ~~IAvI~i~G~I~~~~~~----~~~~~~~~~~~~l~~~l~~a~-~D~~VkaVVLrin-----SpGG~~~as--------~  449 (690)
                      +.|++|+++.+-..|..+    ..|..+..+.++|.++|+++. +|++||+|||+..     |.|+++...        .
T Consensus        19 g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~~   98 (546)
T TIGR03222        19 GPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKV   98 (546)
T ss_pred             CCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccchhh
Confidence            679999999753111111    235566678899999999998 7999999999853     566664321        0


Q ss_pred             -----------HHHHHHHHhcCCCCEEEEECccccHHHHHHHHhcCeEEEecC--ceecc-----ccccccccchHHHHH
Q 005581          450 -----------LMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENL--TLTGS-----IGVVTGKFNLGKLYE  511 (690)
Q Consensus       450 -----------~i~~~I~~l~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~--t~~GS-----IGv~~~~~~~~~l~~  511 (690)
                                 .+.+.++  .-+|||||.|+|.|.|||+.|+++||++||++.  +.++.     +|+++.......+. 
T Consensus        99 ~~~~~~~~~~~~i~~~i~--~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~~gg~~~l~-  175 (546)
T TIGR03222        99 NFCKFTNETRNGIEDSSR--HSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGTGGLTRVT-  175 (546)
T ss_pred             hHHHHHHHHHHHHHHHHH--hCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCccchhhhcc-
Confidence                       0111222  239999999999999999999999999999986  56663     33333332211110 


Q ss_pred             HcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHH-HHHHHhcCCcccHHHHHHcCCc
Q 005581          512 KIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVD-KMEEYAQGRVWTGNDAASRGLV  590 (690)
Q Consensus       512 klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~-~v~~l~~Grv~tg~eA~e~GLV  590 (690)
                                                                       ..|.+... +.+.+++|+.++|+||+++|||
T Consensus       176 -------------------------------------------------~~~~vg~~~A~~llltG~~i~A~eA~~~GLV  206 (546)
T TIGR03222       176 -------------------------------------------------DKRRVRRDHADIFCTIEEGVRGKRAKEWRLV  206 (546)
T ss_pred             -------------------------------------------------ccchhCHHHHHHHHHcCCCccHHHHHHcCCc
Confidence                                                             01222232 3345688999999999999999


Q ss_pred             ccccChHHH----HHHHHHHcCCCC
Q 005581          591 DALGGFSRA----VAIAKQKANIPE  611 (690)
Q Consensus       591 D~ig~~~~a----i~~a~~~a~l~~  611 (690)
                      |++...++.    .+.|.+++..++
T Consensus       207 ~~vv~~~~l~~~a~~lA~~la~~~p  231 (546)
T TIGR03222       207 DEVVKPSQFDAAIAERAAELAAQSD  231 (546)
T ss_pred             eEEeChHHHHHHHHHHHHHHHhCCC
Confidence            999886544    445566666554

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=99.54  E-value=1.9e-13  Score=138.40  Aligned_cols=170  Identities=14%  Similarity=0.095  Sum_probs=128.5

Q ss_pred             EEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcc---------hhhhhHHHHHHHHhcCCC
Q 005581          392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGD---------ALASDLMWREIRLLSESK  462 (690)
Q Consensus       392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~---------~~as~~i~~~I~~l~~~K  462 (690)
                      +|.+.|+|++.... ...++.-.++.++.+|-.+..++..|-|.|+||||||+         +.++-.|++.++.+  +-
T Consensus        32 ii~l~~~i~~~~~~-~~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~~glaIyD~m~~i--k~  108 (222)
T PRK12552         32 IVYLGLPLFSDDDA-KRQVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEAFAICDTMRYI--KP  108 (222)
T ss_pred             EEEECCeecccccc-ccchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccccccHHHHHHHHHhc--CC
Confidence            68899999864211 22333346888999999998887789999999999988         45667899999988  66


Q ss_pred             CEEEEECccccHHHHHHHHhcCe--EEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhH
Q 005581          463 PVIASMSDVAASGGYYMAMAAGT--ILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDE  540 (690)
Q Consensus       463 PVVa~v~g~AaSGGy~iA~aaD~--I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~  540 (690)
                      ||.+.+-|.|+|.|..|+++||+  ++|.|++.+-..-..+..                  .|.             ..+
T Consensus       109 ~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~------------------~G~-------------A~d  157 (222)
T PRK12552        109 PVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGA------------------RGQ-------------ATD  157 (222)
T ss_pred             CeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCccc------------------ccC-------------HHH
Confidence            89999999999999999999997  889999986432211000                  122             223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhc-CCcccHHHHHHcCCcccccC
Q 005581          541 AELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQ-GRVWTGNDAASRGLVDALGG  595 (690)
Q Consensus       541 ~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~-Grv~tg~eA~e~GLVD~ig~  595 (690)
                      .+.-.+.+.+..+.+.+..++..|.+.+++++..+ ..++|++||+++||||+|..
T Consensus       158 i~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~  213 (222)
T PRK12552        158 IQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLE  213 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEec
Confidence            33444456666666666667788999999999887 66779999999999999964

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=99.53  E-value=2.3e-13  Score=136.89  Aligned_cols=159  Identities=16%  Similarity=0.110  Sum_probs=130.1

Q ss_pred             EEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-Cc
Q 005581          143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC  221 (690)
Q Consensus       143 vI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~-~a  221 (690)
                      +|.|.|+|.+.         +...++..|..+..++..+.|+|.||||||.+.....|++.|+.+   ..||++++. .|
T Consensus        33 ii~i~g~I~~~---------~~~~i~~~L~~l~~~~~~~~I~l~InSpGG~v~~g~~I~d~i~~~---~~~v~t~~~G~a  100 (200)
T PRK00277         33 IIFLGGEVEDH---------MANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFI---KPDVSTICIGQA  100 (200)
T ss_pred             EEEECCEECHH---------HHHHHHHHHHHhhccCCCCCEEEEEECCCCcHHHHHHHHHHHHhc---CCCEEEEEEeEe
Confidence            56678999763         356799999988877778889999999999999999999999865   368998887 78


Q ss_pred             chhhhHHhhccC--eeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHH
Q 005581          222 GEKEYYLACACE--ELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD  299 (690)
Q Consensus       222 as~gY~LAsaaD--~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld  299 (690)
                      +|+|.+|+++++  ++++.|.+.++++.....                              .  .-+..+.+.....++
T Consensus       101 aS~a~~I~~ag~~~~r~~~p~s~imih~p~~~------------------------------~--~G~a~di~~~a~~l~  148 (200)
T PRK00277        101 ASMGAFLLAAGAKGKRFALPNSRIMIHQPLGG------------------------------F--QGQATDIEIHAREIL  148 (200)
T ss_pred             ccHHHHHHhcCCCCCEEEcCCceEEeccCccc------------------------------c--cCChhHHHHHHHHHH
Confidence            899999999875  699999999999855210                              0  112334445567888


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHhcC-cccHHHHHhcCCeeEecc
Q 005581          300 NIYGNWLDKVSSTKGKRKEDIERFINDG-VYKVERLKEEGFITNVLY  345 (690)
Q Consensus       300 ~~~~~f~~~Va~~Rg~~~~~v~~~~~~~-v~~a~eAl~~GLID~i~~  345 (690)
                      .+.+.+.+.+++.+|++.+.+++.++.. .++++||+++||||+|..
T Consensus       149 ~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~  195 (200)
T PRK00277        149 KLKKRLNEILAEHTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLT  195 (200)
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHhhCCccccHHHHHHcCCccEEee
Confidence            8889999999999999999999988764 569999999999999964

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=99.52  E-value=1.5e-13  Score=162.53  Aligned_cols=154  Identities=21%  Similarity=0.267  Sum_probs=111.3

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEE-EEcc----CCCcchhhh------h------
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAI-IRID----SPGGDALAS------D------  449 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVV-Lrin----SpGG~~~as------~------  449 (690)
                      ++.|++|+++.+-..     .|..+..+.++|.++++++..|++||+|| ++.+    |.|++...-      +      
T Consensus        20 ~~gVa~itlnrP~~~-----~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~   94 (737)
T TIGR02441        20 KGDVAVVKIDSPNSK-----VNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQEVTQLS   94 (737)
T ss_pred             ECCEEEEEEcCCCCC-----CCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChHHHHHHH
Confidence            468999999987421     24556678899999999999999999865 5553    456654210      1      


Q ss_pred             -HHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecC--ceecc----ccccccccchHHHHHHcCCceeeec
Q 005581          450 -LMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENL--TLTGS----IGVVTGKFNLGKLYEKIGFNKEIIS  521 (690)
Q Consensus       450 -~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~--t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~  521 (690)
                       ...+.+..+ ..+|||||+|+|.|.|||+.||++||+++|++.  +.+|.    +|++++......+...+|.      
T Consensus        95 ~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~------  168 (737)
T TIGR02441        95 QEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGV------  168 (737)
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhCH------
Confidence             111122223 349999999999999999999999999999997  46773    6666555444444333332      


Q ss_pred             ccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccCh
Q 005581          522 RGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGF  596 (690)
Q Consensus       522 ~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~  596 (690)
                                                              .     ...+.+++|+.++|+||+++||||++...
T Consensus       169 ----------------------------------------~-----~A~~l~ltG~~i~a~eA~~~GLVd~vv~~  198 (737)
T TIGR02441       169 ----------------------------------------P-----AALDMMLTGKKIRADRAKKMGIVDQLVDP  198 (737)
T ss_pred             ----------------------------------------H-----HHHHHHHcCCcCCHHHHHHCCCCeEecCC
Confidence                                                    1     14456788999999999999999999875

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=99.51  E-value=4.4e-13  Score=134.55  Aligned_cols=160  Identities=13%  Similarity=0.053  Sum_probs=130.0

Q ss_pred             EEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-Cc
Q 005581          143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC  221 (690)
Q Consensus       143 vI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~-~a  221 (690)
                      +|-|.|+|.+..         ..+++..|.....++.-+-|.|.||||||++.....|+++|+..+   -||++++. .|
T Consensus        32 iifl~~~i~~~~---------a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~~---~~V~Tv~~G~A   99 (200)
T CHL00028         32 LLFLGQEVDDEI---------ANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGLAIYDTMQFVK---PDVHTICLGLA   99 (200)
T ss_pred             EEEECCeecHHH---------HHHHHHHHHHHhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhcC---CCEEEEEEEeh
Confidence            466888888753         467899998877666669999999999999999999999999664   68999987 79


Q ss_pred             chhhhHHhhccC--eeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHH
Q 005581          222 GEKEYYLACACE--ELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD  299 (690)
Q Consensus       222 as~gY~LAsaaD--~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld  299 (690)
                      +|.|.+|++++|  +++|.|.+.++++.....                             +. .+ +..+-+...+.++
T Consensus       100 aS~aslIl~aG~kg~R~~~p~s~imiHqp~~~-----------------------------~~-~G-~a~di~~~a~~l~  148 (200)
T CHL00028        100 ASMASFILAGGEITKRLAFPHARVMIHQPASS-----------------------------FY-EG-QASEFVLEAEELL  148 (200)
T ss_pred             HHHHHHHHhCCCCCCEEecCCCeEEEecCccC-----------------------------cC-CC-CHHHHHHHHHHHH
Confidence            999999999999  689999999999965211                             00 11 2223344456677


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHhcC-cccHHHHHhcCCeeEecc
Q 005581          300 NIYGNWLDKVSSTKGKRKEDIERFINDG-VYKVERLKEEGFITNVLY  345 (690)
Q Consensus       300 ~~~~~f~~~Va~~Rg~~~~~v~~~~~~~-v~~a~eAl~~GLID~i~~  345 (690)
                      .+-+.+.+.+++..|.+.+++++.++.. .++++||+++||||+|..
T Consensus       149 ~~~~~~~~~ya~~Tg~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~  195 (200)
T CHL00028        149 KLRETITRVYAQRTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAV  195 (200)
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCCcEEee
Confidence            7888899999999999999999999875 559999999999999975

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.50  E-value=1.1e-13  Score=137.06  Aligned_cols=159  Identities=14%  Similarity=0.176  Sum_probs=126.5

Q ss_pred             EEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-Cc
Q 005581          143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC  221 (690)
Q Consensus       143 vI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~-~a  221 (690)
                      .|.|.|+|.+.         +...+++.|..+...+..+-|.|.+|||||.+.....|+++|+..   +.||++++. .|
T Consensus        18 ~i~l~g~I~~~---------~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v~~g~~i~~~i~~~---~~~v~t~~~G~a   85 (182)
T PF00574_consen   18 IIFLNGPIDEE---------SANRLISQLLYLENEDKNKPINIYINSPGGDVDAGLAIYDAIRSS---KAPVTTVVLGLA   85 (182)
T ss_dssp             EEEEESSBSHH---------HHHHHHHHHHHHHHHTSSSEEEEEEEECEBCHHHHHHHHHHHHHS---SSEEEEEEEEEE
T ss_pred             EEEECCccCHH---------HHHHHHHHHHHHhccCCCceEEEEEcCCCCccHHHHHHHHHHHhc---CCCeEEEEeCcc
Confidence            45677888764         356788888777555566889999999999999999999999954   689999998 79


Q ss_pred             chhhhHHhhccCe--eEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHH
Q 005581          222 GEKEYYLACACEE--LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD  299 (690)
Q Consensus       222 as~gY~LAsaaD~--I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld  299 (690)
                      +|+|.+|+++|++  .+|.|.+.++++.+.....                                .+..+-+.....++
T Consensus        86 aSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~--------------------------------g~~~~l~~~~~~l~  133 (182)
T PF00574_consen   86 ASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSG--------------------------------GNASELREQAKELE  133 (182)
T ss_dssp             ETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEE--------------------------------EEHHHHHHHHHHHH
T ss_pred             ccceehhhhcCCcCceeeeecCEEEeecceeecc--------------------------------cccchhHHHHHHHH
Confidence            9999999999999  5999999999997622111                                13334455566777


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHhcCcc-cHHHHHhcCCeeEecc
Q 005581          300 NIYGNWLDKVSSTKGKRKEDIERFINDGVY-KVERLKEEGFITNVLY  345 (690)
Q Consensus       300 ~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~-~a~eAl~~GLID~i~~  345 (690)
                      ...+.+.+.+++..|++.+.+++.++...| +++||+++||||+|..
T Consensus       134 ~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~  180 (182)
T PF00574_consen  134 KLNERIANIYAERTGLSKEEIEELMDRDTWLSAEEALEYGIIDEIIE  180 (182)
T ss_dssp             HHHHHHHHHHHHHHTS-HHHHHHHCSSTEEEEHHHHHHHTSSSEEES
T ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHhCCccccHHHHHHcCCCCEecc
Confidence            888889999999999999999999887655 9999999999999964

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=99.50  E-value=4.1e-13  Score=136.26  Aligned_cols=159  Identities=13%  Similarity=0.030  Sum_probs=125.8

Q ss_pred             EEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-Cc
Q 005581          143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC  221 (690)
Q Consensus       143 vI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~-~a  221 (690)
                      +|-|.|+|++.         +..+++..|......+.-+-|.|.||||||++.....|+++++.++   -||++++. .|
T Consensus        56 iifl~~~Idd~---------~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aGlaIyd~m~~~~---~~V~tv~~G~A  123 (221)
T PRK14514         56 IIFLGTQIDDY---------TANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGLGIYDTMQFIS---SDVATICTGMA  123 (221)
T ss_pred             EEEECCEEcHH---------HHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhHHHHHHHHHhcC---CCEEEEEEEEe
Confidence            46678888874         3467888877765544458899999999999999999999999764   58999987 79


Q ss_pred             chhhhHHhhccCe--eEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHH
Q 005581          222 GEKEYYLACACEE--LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD  299 (690)
Q Consensus       222 as~gY~LAsaaD~--I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld  299 (690)
                      +|.|.+|+++||+  .+|.|.+.++++.+...                              . .+ +..+-+...+.++
T Consensus       124 AS~AslIl~aG~~gkR~~~pna~iMiHqP~~~------------------------------~-~G-~a~di~i~a~el~  171 (221)
T PRK14514        124 ASMASVLLVAGTKGKRSALPHSRVMIHQPLGG------------------------------A-QG-QASDIEITAREIQ  171 (221)
T ss_pred             hhHHHHHHhcCCCCceeeCCCCEEEeccCCcc------------------------------c-CC-CcchHHHHHHHHH
Confidence            9999999999996  89999999999966210                              0 01 1112233344567


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHhcC-cccHHHHHhcCCeeEecc
Q 005581          300 NIYGNWLDKVSSTKGKRKEDIERFINDG-VYKVERLKEEGFITNVLY  345 (690)
Q Consensus       300 ~~~~~f~~~Va~~Rg~~~~~v~~~~~~~-v~~a~eAl~~GLID~i~~  345 (690)
                      .+.+.+.+.+++..|.+.+++.+.++.. .++++||+++||||+|..
T Consensus       172 ~~~~~i~~iya~~TG~~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~  218 (221)
T PRK14514        172 KLKKELYTIIADHSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEVLI  218 (221)
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCccEEee
Confidence            7888888899999999999999999875 459999999999999864

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=99.50  E-value=5.2e-13  Score=133.60  Aligned_cols=160  Identities=13%  Similarity=0.070  Sum_probs=127.8

Q ss_pred             EEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-Cc
Q 005581          143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC  221 (690)
Q Consensus       143 vI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~-~a  221 (690)
                      +|-|.|+|++.         +..+++..|.....++..+-|.|.||||||++.....|+++|+.++   -||++++. .|
T Consensus        27 iifl~~~i~~~---------~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~~---~~V~t~~~G~A   94 (196)
T PRK12551         27 IIFLGEPVTSD---------SANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHVK---PDVHTVCVGLA   94 (196)
T ss_pred             EEEECCeecHH---------HHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhcC---CCEEEEEEEEe
Confidence            35677788774         3468999999887666668999999999999999999999999774   57888887 79


Q ss_pred             chhhhHHhhccCe--eEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHH
Q 005581          222 GEKEYYLACACEE--LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD  299 (690)
Q Consensus       222 as~gY~LAsaaD~--I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld  299 (690)
                      +|.|.+|++++|+  .+|.|.+.++++.+...                              ...  +..+.+.....++
T Consensus        95 aS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~------------------------------~~G--~a~di~~~a~~l~  142 (196)
T PRK12551         95 ASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGG------------------------------ARG--QASDIRIQADEIL  142 (196)
T ss_pred             hhHHHHHHhCCCCCceecCCCCEEEEecCCcc------------------------------cCC--CcchHHHHHHHHH
Confidence            9999999999996  78999999999965210                              011  1112233345677


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHhcCc-ccHHHHHhcCCeeEecch
Q 005581          300 NIYGNWLDKVSSTKGKRKEDIERFINDGV-YKVERLKEEGFITNVLYD  346 (690)
Q Consensus       300 ~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v-~~a~eAl~~GLID~i~~~  346 (690)
                      .+.+.+.+.+++..|++.+++.+.++... ++++||+++||||+|...
T Consensus       143 ~~~~~~~~~ya~~tG~~~~~i~~~~~rd~~msa~EA~eyGliD~I~~~  190 (196)
T PRK12551        143 FLKERLNTELSERTGQPLERIQEDTDRDFFMSPSEAVEYGLIDLVIDK  190 (196)
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHhhcCcCCCHHHHHHcCCCcEEecc
Confidence            77888888999999999999999998765 499999999999999753

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=4.7e-13  Score=145.44  Aligned_cols=170  Identities=22%  Similarity=0.267  Sum_probs=135.8

Q ss_pred             CCCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEE
Q 005581          386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVI  465 (690)
Q Consensus       386 ~~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVV  465 (690)
                      .+++|.||+++|+|++           .+.+.+.+.|..|+++ +..+|||.+|+|||-+.+..+|.++|.+  ++.||+
T Consensus        24 ~~~~v~vi~i~g~I~~-----------~s~~~l~r~l~~A~~~-~a~~vvl~ldTPGGl~~sm~~iv~~i~~--s~vPV~   89 (436)
T COG1030          24 AEKKVYVIEIDGAIDP-----------ASADYLQRALQSAEEE-NAAAVVLELDTPGGLLDSMRQIVRAILN--SPVPVI   89 (436)
T ss_pred             cCCeEEEEEecCccCH-----------HHHHHHHHHHHHHHhC-CCcEEEEEecCCCchHHHHHHHHHHHHc--CCCCEE
Confidence            3579999999999995           3578889999988865 5679999999999999888888888874  499999


Q ss_pred             EEEC---ccccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHH
Q 005581          466 ASMS---DVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAE  542 (690)
Q Consensus       466 a~v~---g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~  542 (690)
                      .++.   +.|+|+|.||+++||+++|.|.|.+|+--.+...++                               +.++..
T Consensus        90 ~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~-------------------------------~~~~~~  138 (436)
T COG1030          90 GYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGT-------------------------------SAKEAN  138 (436)
T ss_pred             EEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCC-------------------------------Cccchh
Confidence            9984   579999999999999999999999997443322211                               111111


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhc-CCcccHHHHHHcCCcccccC-hHHHHHHHHH
Q 005581          543 LFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQ-GRVWTGNDAASRGLVDALGG-FSRAVAIAKQ  605 (690)
Q Consensus       543 ~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~-Grv~tg~eA~e~GLVD~ig~-~~~ai~~a~~  605 (690)
                           ..+.+..|+...++.||++.+..+++.+ ...++++||++.|++|-+.. ..|++..+.-
T Consensus       139 -----~~n~~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~~~ell~~~~g  198 (436)
T COG1030         139 -----TTNAAVAYIRSLAEERGRNPTWAERFVTENLSLTAEEALRQGVIDLIARDLNELLKKLDG  198 (436)
T ss_pred             -----hHHHHHHHHHHHHHHcCCChHHHHHHhhhccCCChhHHHhcCccccccCCHHHHHHHccC
Confidence                 4456677888899999999998888766 99999999999999999864 5666665443

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=99.48  E-value=8e-13  Score=145.63  Aligned_cols=155  Identities=12%  Similarity=0.041  Sum_probs=112.6

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh---------hH---
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS---------DL---  450 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as---------~~---  450 (690)
                      .+++++|+++.+-.      .|+.+..+.++|.++|+.+.+|++|++|||+.+    |.||++...         +.   
T Consensus        49 ~~~~~~ItLNRP~~------lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~  122 (407)
T PLN02851         49 RAKSRAAILNRPSS------LNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKL  122 (407)
T ss_pred             ECCEEEEEECCCCc------CCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHH
Confidence            46789999998765      355667889999999999999999999999885    577765321         01   


Q ss_pred             ----HHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeec
Q 005581          451 ----MWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIIS  521 (690)
Q Consensus       451 ----i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~  521 (690)
                          +++....+ .-+|||||.|+|.|+|||+.|+++||++||++.+.++.    ||+++.......+.           
T Consensus       123 ~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~-----------  191 (407)
T PLN02851        123 FFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLS-----------  191 (407)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHH-----------
Confidence                11111122 33899999999999999999999999999999999873    56554433211111           


Q ss_pred             ccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHH
Q 005581          522 RGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRA  599 (690)
Q Consensus       522 ~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~a  599 (690)
                                                          ++     ........+++|+.++|++|+++||||++...++.
T Consensus       192 ------------------------------------rl-----~g~~g~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l  228 (407)
T PLN02851        192 ------------------------------------RL-----PGYLGEYLALTGQKLNGVEMIACGLATHYCLNARL  228 (407)
T ss_pred             ------------------------------------Hh-----cCHHHHHHHHhCCcCCHHHHHHCCCceeecCHhhH
Confidence                                                00     01112345688999999999999999999876543

>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=99.48  E-value=1.1e-13  Score=135.98  Aligned_cols=165  Identities=24%  Similarity=0.340  Sum_probs=125.6

Q ss_pred             CCCCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhH--------------
Q 005581          385 GGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDL--------------  450 (690)
Q Consensus       385 ~~~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~--------------  450 (690)
                      +.+..|.||.+|.+-..      ++.+..+.+.+.+.++++..|+.+|.|+||--+||-...+.|.              
T Consensus        36 g~~~GItvl~mNRpa~k------Nsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~f  109 (291)
T KOG1679|consen   36 GKDEGITILNMNRPAKK------NSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRF  109 (291)
T ss_pred             CCCCCeEEEecCChhhh------ccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHHH
Confidence            44567888888888763      4455677899999999999999999999998888744332211              


Q ss_pred             ------HHHHHHHhcCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeee
Q 005581          451 ------MWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEII  520 (690)
Q Consensus       451 ------i~~~I~~l~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i  520 (690)
                            ++..|.++  +.||||++.|.|.|||..+|++||+++|..++.+|-    .+++|+-.+.+.|..-+|+..   
T Consensus       110 V~~lR~~~~dIe~L--p~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~al---  184 (291)
T KOG1679|consen  110 VNGLRGLFNDIERL--PQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVAL---  184 (291)
T ss_pred             HHHHHHHHHHHHhC--CccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHHH---
Confidence                  22233334  999999999999999999999999999999999995    456777777766655555411   


Q ss_pred             cccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChH---
Q 005581          521 SRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFS---  597 (690)
Q Consensus       521 ~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~---  597 (690)
                                                                      .-+.++++|+++|.||..+|||+.+....   
T Consensus       185 ------------------------------------------------aKELIftarvl~g~eA~~lGlVnhvv~qneeg  216 (291)
T KOG1679|consen  185 ------------------------------------------------AKELIFTARVLNGAEAAKLGLVNHVVEQNEEG  216 (291)
T ss_pred             ------------------------------------------------HHhHhhhheeccchhHHhcchHHHHHhcCccc
Confidence                                                            33557999999999999999999986543   


Q ss_pred             -HHHHHHHHHcC
Q 005581          598 -RAVAIAKQKAN  608 (690)
Q Consensus       598 -~ai~~a~~~a~  608 (690)
                       .+.+.|.++|.
T Consensus       217 daa~~kal~lA~  228 (291)
T KOG1679|consen  217 DAAYQKALELAR  228 (291)
T ss_pred             cHHHHHHHHHHH
Confidence             45555666554

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=99.48  E-value=9.8e-13  Score=130.42  Aligned_cols=161  Identities=17%  Similarity=0.136  Sum_probs=134.5

Q ss_pred             EEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-Ccc
Q 005581          144 MKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VCG  222 (690)
Q Consensus       144 I~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~-~aa  222 (690)
                      |-|.|+|.+..         ...++..|.....++..+-|.|.||||||++.+...|++.++..   ++||..++. .++
T Consensus        30 I~l~g~I~~~~---------a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~AIydtm~~i---k~~V~ti~~G~Aa   97 (200)
T COG0740          30 IFLGGEIEDHM---------ANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFI---KPPVSTICMGQAA   97 (200)
T ss_pred             EEEeeeechHH---------HHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhHHHHHHHHhc---CCCeEEEEecHHH
Confidence            88999998752         35688888888778889999999999999999999999999976   489999987 799


Q ss_pred             hhhhHHhhccCee--EecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHHH
Q 005581          223 EKEYYLACACEEL--YAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDN  300 (690)
Q Consensus       223 s~gY~LAsaaD~I--~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~  300 (690)
                      |.|-.|++++++-  |+-|++.+.++.+.+.                              . .+ ...+-+..-+.++.
T Consensus        98 Smgs~l~~aG~~g~r~~lPnsrimIHqP~gg------------------------------~-~G-~a~Di~i~A~ei~~  145 (200)
T COG0740          98 SMGSVLLMAGDKGKRFALPNARIMIHQPSGG------------------------------A-QG-QASDIEIHAREILK  145 (200)
T ss_pred             hHHHHHHhcCCCCCceeCCCceEEEecCCcc------------------------------C-cc-CHHHHHHHHHHHHH
Confidence            9999999999997  9999999999977210                              0 11 12245556667888


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHhcCcc-cHHHHHhcCCeeEecchhH
Q 005581          301 IYGNWLDKVSSTKGKRKEDIERFINDGVY-KVERLKEEGFITNVLYDDE  348 (690)
Q Consensus       301 ~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~-~a~eAl~~GLID~i~~~de  348 (690)
                      +.....+.+++..|.+.+++++..+...| +++||+++||||++....+
T Consensus       146 ~~~~l~~i~a~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~  194 (200)
T COG0740         146 IKERLNRIYAEHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESRE  194 (200)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHhhcccccCCHHHHHHcCCcceeccccc
Confidence            88999999999999999999998887655 9999999999999976544

>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

Probab=99.46  E-value=1.6e-13  Score=135.06  Aligned_cols=161  Identities=22%  Similarity=0.254  Sum_probs=120.7

Q ss_pred             CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhh-------------------
Q 005581          388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALAS-------------------  448 (690)
Q Consensus       388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as-------------------  448 (690)
                      +.||-|.++.|-+++      .....+..++++++..|+.|++|.+|+|.+|+.|+.+++|                   
T Consensus        27 ~giakItinRPevrN------AfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~  100 (282)
T COG0447          27 DGIAKITINRPEVRN------AFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGI  100 (282)
T ss_pred             CceEEEEecChhhhc------cCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCCccC
Confidence            589999999999864      4455678999999999999999999999998666555442                   


Q ss_pred             -----hHHHHHHHHhcCCCCEEEEECccccHHHHHHHHhcCeEEEecCceeccccccccc----cchHHHHHHcCCceee
Q 005581          449 -----DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGK----FNLGKLYEKIGFNKEI  519 (690)
Q Consensus       449 -----~~i~~~I~~l~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~----~~~~~l~~klGi~~~~  519 (690)
                           -.+.+.|+.+  +|||||.|+|+|+|||-.+-+.||.-+|+.++++|--|.--+.    ++.+.|....      
T Consensus       101 ~rLnvLdlQrlIR~~--PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~V------  172 (282)
T COG0447         101 PRLNVLDLQRLIRTM--PKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIV------  172 (282)
T ss_pred             cccchhhHHHHHHhC--CcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHh------
Confidence                 1234455555  9999999999999999999999999999999999865532222    2222222111      


Q ss_pred             ecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHH-hcCCcccHHHHHHcCCcccccChHH
Q 005581          520 ISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEY-AQGRVWTGNDAASRGLVDALGGFSR  598 (690)
Q Consensus       520 i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l-~~Grv~tg~eA~e~GLVD~ig~~~~  598 (690)
                                                                    .....+++ +-+|.|+++||+++|||+.+.+.++
T Consensus       173 ----------------------------------------------GqKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~  206 (282)
T COG0447         173 ----------------------------------------------GQKKAREIWFLCRQYDAEEALDMGLVNTVVPHAD  206 (282)
T ss_pred             ----------------------------------------------hhhhhHHhhhhhhhccHHHHHhcCceeeeccHHH
Confidence                                                          22234455 4599999999999999999999876


Q ss_pred             HHHHHHHHcC
Q 005581          599 AVAIAKQKAN  608 (690)
Q Consensus       599 ai~~a~~~a~  608 (690)
                      +.++..++|.
T Consensus       207 LE~e~v~W~~  216 (282)
T COG0447         207 LEKETVQWAR  216 (282)
T ss_pred             HHHHHHHHHH
Confidence            6555555443

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=99.43  E-value=3.5e-12  Score=127.87  Aligned_cols=159  Identities=13%  Similarity=0.042  Sum_probs=125.7

Q ss_pred             EEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-Ccc
Q 005581          144 MKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VCG  222 (690)
Q Consensus       144 I~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~-~aa  222 (690)
                      |-|.|+|.+..         ..+|+..|.....++.-+-|.|.||||||++.....|++.|+.++   -||++++. .|+
T Consensus        30 ifl~~~i~~~~---------a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~GlaIyd~m~~~~---~~V~Ti~~G~Aa   97 (201)
T PRK14513         30 IFVGTPIESQM---------ANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLAIYDTMRYIK---APVSTICVGIAM   97 (201)
T ss_pred             EEECCEEcHHH---------HHHHHHHHHHhhccCCCCCEEEEEECCCCchhhHHHHHHHHHhcC---CCEEEEEEeeeh
Confidence            45677877643         457888888887666668899999999999999999999999774   57888887 799


Q ss_pred             hhhhHHhhccCe--eEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHHH
Q 005581          223 EKEYYLACACEE--LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDN  300 (690)
Q Consensus       223 s~gY~LAsaaD~--I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~  300 (690)
                      |.|.+|+++||+  ++|.|.+.++++.+...                             +  .+...+ -+.....++.
T Consensus        98 S~As~il~aG~kgkR~~~pna~iMIHqp~~~-----------------------------~--~G~a~d-i~~~a~el~~  145 (201)
T PRK14513         98 SMGSVLLMAGDKGKRMALPNSRIMIHQGSAG-----------------------------F--RGNTPD-LEVQAKEVLF  145 (201)
T ss_pred             hhHHHHHhcCCCCcEEecCCeEEEEecCCCC-----------------------------C--CCCHHH-HHHHHHHHHH
Confidence            999999999997  89999999999976211                             0  111122 2333334556


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHhcCcc-cHHHHHhcCCeeEecch
Q 005581          301 IYGNWLDKVSSTKGKRKEDIERFINDGVY-KVERLKEEGFITNVLYD  346 (690)
Q Consensus       301 ~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~-~a~eAl~~GLID~i~~~  346 (690)
                      +-+.+.+.+++..|++.+++.+.++...| +++||+++||||+|...
T Consensus       146 ~~~~l~~iya~~Tg~~~~~I~~~~~rd~~msa~EA~eyGliD~I~~~  192 (201)
T PRK14513        146 LRDTLVDIYHRHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSVIEP  192 (201)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHhccCcccCHHHHHHcCCCcEEecc
Confidence            77788888899999999999999987655 99999999999999753

>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=7.3e-12  Score=126.44  Aligned_cols=160  Identities=16%  Similarity=0.194  Sum_probs=123.4

Q ss_pred             EEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECcc
Q 005581          392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV  471 (690)
Q Consensus       392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g~  471 (690)
                      ||++.++|++           ..++.++.+|-.+..++.-|-|.|.||||||++.+.-.||+.++.+  +-||-+.+-|.
T Consensus        94 Ii~lg~~Idd-----------~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtaglAIYDtMq~i--k~~V~Tic~G~  160 (275)
T KOG0840|consen   94 IVFLGQPIDD-----------DVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGLAIYDTMQYI--KPDVSTICVGL  160 (275)
T ss_pred             eeeeCCcCcH-----------HHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhhhHHHHHHhh--CCCceeeehhh
Confidence            6788899884           5688899999999999999999999999999999999999999988  66777777899


Q ss_pred             ccHHHHHHHHhcC--eEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHH
Q 005581          472 AASGGYYMAMAAG--TILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQ  549 (690)
Q Consensus       472 AaSGGy~iA~aaD--~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~  549 (690)
                      |+|-|-.|.+++-  +++|-|++.+...-..++                  ..|...|+.             +-.+.+.
T Consensus       161 Aas~aalLLaaG~KG~R~alPnsriMIhQP~gg------------------a~Gqa~Di~-------------i~akE~~  209 (275)
T KOG0840|consen  161 AASMAALLLAAGAKGKRYALPNSRIMIHQPSGG------------------AGGQATDIV-------------IQAKELM  209 (275)
T ss_pred             HHhHHHHHHhcCCCcceeecCCceeEEeccCCC------------------cCccchHHH-------------HHHHHHH
Confidence            9998888888875  699999998643221111                  122222222             2223344


Q ss_pred             HHHHHHHHHHHhhcCCCHHHHHHHhc-CCcccHHHHHHcCCcccccC
Q 005581          550 NAYKLFRDKAAFSRSMTVDKMEEYAQ-GRVWTGNDAASRGLVDALGG  595 (690)
Q Consensus       550 ~~y~~F~~~Va~~R~~~~~~v~~l~~-Grv~tg~eA~e~GLVD~ig~  595 (690)
                      ...+...+..+++.|.+.+++++-.+ .+.++++||+++||||.|..
T Consensus       210 ~~k~~l~~i~a~~Tgq~~e~i~~d~dRd~fmsa~EA~eyGliD~v~~  256 (275)
T KOG0840|consen  210 RIKEYLNEIYAKHTGQPLEVIEKDMDRDRFMSAEEAKEYGLIDKVID  256 (275)
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHhhhcccccCCHHHHHHhcchhhhhc
Confidence            44444445558889999999988666 89999999999999999864

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=99.34  E-value=3e-11  Score=122.44  Aligned_cols=168  Identities=14%  Similarity=0.062  Sum_probs=128.3

Q ss_pred             EEEEceeeccccccccC-CCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCC---------HHHHHHHHHHHHHHhhcCC
Q 005581          143 TMKLRGQIADQLKSRFS-SGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCG---------WGKVEEIRRHVVDFKKSGK  212 (690)
Q Consensus       143 vI~l~G~I~~~~~~~~~-~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~---------~~~~~eI~~aI~~~r~sgK  212 (690)
                      +|-|.|+|.+.....+. +.-....|+..|-....++.-+-|.|.||||||+         +.....|++.++.++   -
T Consensus        32 ii~l~~~i~~~~~~~~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~~glaIyD~m~~ik---~  108 (222)
T PRK12552         32 IVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEAFAICDTMRYIK---P  108 (222)
T ss_pred             EEEECCeeccccccccchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccccccHHHHHHHHHhcC---C
Confidence            46678888875221111 1123457888888887776778999999999987         667789999999875   4


Q ss_pred             eEEEEec-CcchhhhHHhhccCe--eEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHH
Q 005581          213 FIIGYVP-VCGEKEYYLACACEE--LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEE  289 (690)
Q Consensus       213 pVvAy~~-~aas~gY~LAsaaD~--I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e  289 (690)
                      +|.+++. .|+|.+.+|++++|+  .++.|.+.+.++.....                              . .+ +..
T Consensus       109 ~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~------------------------------~-~G-~A~  156 (222)
T PRK12552        109 PVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSG------------------------------A-RG-QAT  156 (222)
T ss_pred             CeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcc------------------------------c-cc-CHH
Confidence            6888877 799999999999997  78999999999965211                              0 11 223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcc-cHHHHHhcCCeeEecc
Q 005581          290 NCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVY-KVERLKEEGFITNVLY  345 (690)
Q Consensus       290 ~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~-~a~eAl~~GLID~i~~  345 (690)
                      +-+.....++.+.+.+.+.+++..|++.+++.+.++...| +++||+++||||+|..
T Consensus       157 di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~  213 (222)
T PRK12552        157 DIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLE  213 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEec
Confidence            3333444577788888999999999999999999988654 9999999999999964

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=99.33  E-value=1.2e-11  Score=129.66  Aligned_cols=166  Identities=12%  Similarity=0.164  Sum_probs=118.5

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcC------CCCCCHHHH-----------HHH
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIE------PLSCGWGKV-----------EEI  200 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~------s~Gg~~~~~-----------~eI  200 (690)
                      ++.|++|+|+.+=.    .|..+...+.++.++++++..|+ |++|||..+      +.|+++...           ..+
T Consensus        11 ~~~v~~itlnrp~~----~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~   85 (261)
T PRK11423         11 INKIATITFNNPAK----RNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPL   85 (261)
T ss_pred             ECCEEEEEEcCccc----cCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHH
Confidence            57899999988621    12223345778999999999888 999999864      235555432           224


Q ss_pred             HHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCC
Q 005581          201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD  279 (690)
Q Consensus       201 ~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~e  279 (690)
                      ++.+..+...+|||||.++ .|..+|+.|+++||.+++.+.+.++...+            ++|+.+.         .+.
T Consensus        86 ~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~~~---------~g~  144 (261)
T PRK11423         86 RQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPA------------NLGVPYN---------LSG  144 (261)
T ss_pred             HHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchh------------hcCCCCC---------ccH
Confidence            4556667778999999999 46688999999999999999999999877            6777541         111


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581          280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL  357 (690)
Q Consensus       280 p~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~  357 (690)
                      .                      ..+.+.+..      ...++ ++.|+.++++||+++||||++...+++.+.+.+.+
T Consensus       145 ~----------------------~~l~~~vg~------~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a  195 (261)
T PRK11423        145 I----------------------LNFTNDAGF------HIVKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMA  195 (261)
T ss_pred             H----------------------HHHHHHhHH------HHHHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHH
Confidence            1                      113333332      22333 46789999999999999999998888776655443

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=99.32  E-value=1.5e-11  Score=128.88  Aligned_cols=167  Identities=15%  Similarity=0.182  Sum_probs=120.2

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH---------------
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV---------------  197 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~---------------  197 (690)
                      .++.|++|+++.+=    ..|..+...+.++.+.++++..|++|++|||...+    .|+++...               
T Consensus        10 ~~~~v~~itlnrp~----~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   85 (262)
T PRK05995         10 QRGQVATVTLNRPD----VRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADA   85 (262)
T ss_pred             eeCCEEEEEEcCcc----cccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhHH
Confidence            35679999998762    11222334578899999999999999999998765    24554321               


Q ss_pred             HHHHHHHHHHhhcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccc
Q 005581          198 EEIRRHVVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS  276 (690)
Q Consensus       198 ~eI~~aI~~~r~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKs  276 (690)
                      ..+.+.+..+...+|||||.+++ |..+|+.|+++||.+++.+.+.++...+            ++|+-|.         
T Consensus        86 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p~---------  144 (262)
T PRK05995         86 RRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEV------------RLGLIPA---------  144 (262)
T ss_pred             HHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCccc------------ccccCcc---------
Confidence            12334555666789999999995 6688999999999999999999999988            7777551         


Q ss_pred             cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHH
Q 005581          277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKE  355 (690)
Q Consensus       277 a~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~  355 (690)
                      .+.++                       +...      +......+ ++.|..++++||+++||||++...+++.+.+.+
T Consensus       145 ~g~~~-----------------------l~~~------vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~  195 (262)
T PRK05995        145 TISPY-----------------------VIRA------MGERAARRYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDE  195 (262)
T ss_pred             chHHH-----------------------HHHH------hCHHHHHHHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHH
Confidence            11110                       1222      22333333 467899999999999999999988887766555


Q ss_pred             Hh
Q 005581          356 RL  357 (690)
Q Consensus       356 ~~  357 (690)
                      .+
T Consensus       196 ~a  197 (262)
T PRK05995        196 LL  197 (262)
T ss_pred             HH
Confidence            43

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=99.31  E-value=1.8e-11  Score=127.96  Aligned_cols=167  Identities=17%  Similarity=0.159  Sum_probs=119.6

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH----------HHHHHH
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV----------EEIRRH  203 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~----------~eI~~a  203 (690)
                      ++.|++|+++.+=    ..+..+...+.++.+.|+++..||.|++|||+..+    .|+++...          ..+.+.
T Consensus        11 ~~~va~Itlnrp~----~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~   86 (258)
T PRK06190         11 HDRVRTLTLNRPE----ARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNP   86 (258)
T ss_pred             eCCEEEEEEcCCc----ccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHH
Confidence            5679999998762    11222334578899999999999999999998764    35555432          123445


Q ss_pred             HHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCccc
Q 005581          204 VVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLT  282 (690)
Q Consensus       204 I~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~  282 (690)
                      +..+...+|||||.++ .|..+|+.|+++||.++|.+.+.++...+            ++|+-|.         .+..+ 
T Consensus        87 ~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~p~---------~g~~~-  144 (258)
T PRK06190         87 SPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHA------------RVGILPG---------WGLSV-  144 (258)
T ss_pred             HHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECccc------------ccCcCCC---------ccHHH-
Confidence            5667778999999999 57788999999999999999999998877            7777551         11111 


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581          283 RKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL  357 (690)
Q Consensus       283 ~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~  357 (690)
                                           .+.      |.+......+ ++.|..++++||+++||||++...+++.+...+.+
T Consensus       145 ---------------------~l~------r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a  193 (258)
T PRK06190        145 ---------------------RLP------QKVGIGRARRMSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLA  193 (258)
T ss_pred             ---------------------HHH------HHhCHHHHHHHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHH
Confidence                                 011      1222333333 46789999999999999999998888776655443

>PLN02600 enoyl-CoA hydratase

Probab=99.31  E-value=2e-11  Score=127.15  Aligned_cols=166  Identities=13%  Similarity=0.098  Sum_probs=118.0

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC-----CCCCHHHH------------HHH
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-----LSCGWGKV------------EEI  200 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s-----~Gg~~~~~------------~eI  200 (690)
                      ++.|++|+++.+=    ..|..+...+.++.+.++++..|+.|++|||+...     .|+++...            ..+
T Consensus         2 ~~~v~~itlnrp~----~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   77 (251)
T PLN02600          2 DSGIVELRLDRPE----AKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSL   77 (251)
T ss_pred             CCcEEEEEEcCCc----ccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHH
Confidence            5689999999862    11222334578999999999999999999998652     25555431            112


Q ss_pred             HHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCC
Q 005581          201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD  279 (690)
Q Consensus       201 ~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~e  279 (690)
                      ...+..+...+|||||.++ .|..+|+.|+++||.++|.+.+.++...+            ++|+-|         ..+.
T Consensus        78 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~------------~~Gl~p---------~~g~  136 (251)
T PLN02600         78 RSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPET------------GLAIIP---------GAGG  136 (251)
T ss_pred             HHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCccc------------ccCcCC---------CchH
Confidence            3345556677999999999 56788999999999999999999998877            667654         1111


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581          280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKER  356 (690)
Q Consensus       280 p~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~  356 (690)
                      .+.                      +...      +......+ ++.|..++++||+++||||++...+++.+...+.
T Consensus       137 ~~~----------------------l~~~------~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~  186 (251)
T PLN02600        137 TQR----------------------LPRL------VGRSRAKELIFTGRRIGAREAASMGLVNYCVPAGEAYEKALEL  186 (251)
T ss_pred             HHH----------------------HHHH------hCHHHHHHHHHhCCccCHHHHHHcCCCcEeeChhHHHHHHHHH
Confidence            110                      1122      22222233 4678999999999999999999988887665543

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=99.31  E-value=1.9e-11  Score=127.94  Aligned_cols=168  Identities=19%  Similarity=0.226  Sum_probs=120.3

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH---------------
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV---------------  197 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~---------------  197 (690)
                      .++.|++|+++.+=.    .|..+...+.++.++|+++..|++|++|||+-+.    .|+++...               
T Consensus         9 ~~~~v~~itlnrp~~----~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~   84 (260)
T PRK07511          9 REGSTLVLTLSNPGA----RNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASI   84 (260)
T ss_pred             eECCEEEEEECCccc----ccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHH
Confidence            467899999998621    1222335578999999999999999999998754    24554332               


Q ss_pred             HHHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccc
Q 005581          198 EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS  276 (690)
Q Consensus       198 ~eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKs  276 (690)
                      ..+++.+..+...+|||||.++ .|..+|..|+++||.+++.+.+.++...+            ++|+-|         .
T Consensus        85 ~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~------------~~Gl~p---------~  143 (260)
T PRK07511         85 DGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYV------------KVGLTP---------D  143 (260)
T ss_pred             HHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEecccc------------ccCcCC---------C
Confidence            1223444556667999999999 57788999999999999999999998877            777765         2


Q ss_pred             cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHH
Q 005581          277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKE  355 (690)
Q Consensus       277 a~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~  355 (690)
                      .+..+.                      +.      |.+......+ ++.|..++++||++.||||++...+++.+...+
T Consensus       144 ~g~~~~----------------------l~------~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~  195 (260)
T PRK07511        144 GGGSWF----------------------LA------RALPRQLATELLLEGKPISAERLHALGVVNRLAEPGQALAEALA  195 (260)
T ss_pred             chHHHH----------------------HH------HHhCHHHHHHHHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHH
Confidence            222211                      11      2223333333 467899999999999999999988877665554


Q ss_pred             Hh
Q 005581          356 RL  357 (690)
Q Consensus       356 ~~  357 (690)
                      .+
T Consensus       196 ~a  197 (260)
T PRK07511        196 LA  197 (260)
T ss_pred             HH
Confidence            43

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=99.31  E-value=1.7e-11  Score=127.98  Aligned_cols=166  Identities=16%  Similarity=0.160  Sum_probs=118.8

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHH----------HHHHH
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVE----------EIRRH  203 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~----------eI~~a  203 (690)
                      ++.|++|+++.+=    ..+..+...+.++.++++++..|+.|++|||+..+    .|+++....          ...+.
T Consensus         9 ~~~v~~itlnrp~----~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~   84 (255)
T PRK09674          9 QQRVLLLTLNRPE----ARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQL   84 (255)
T ss_pred             ECCEEEEEEcCCC----ccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHH
Confidence            5679999999862    11222334578999999999999999999998754    355554321          12234


Q ss_pred             HHHHhhcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCccc
Q 005581          204 VVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLT  282 (690)
Q Consensus       204 I~~~r~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~  282 (690)
                      +..+...+|||||.+++ |..+|..|+++||.+++.+.+.++...+            ++|+-|         ..+..+ 
T Consensus        85 ~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~p---------~~g~~~-  142 (255)
T PRK09674         85 WQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEI------------TLGIMP---------GAGGTQ-  142 (255)
T ss_pred             HHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchh------------hcCCCC---------CccHHH-
Confidence            55566789999999995 6688999999999999999999999888            788865         111111 


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581          283 RKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKER  356 (690)
Q Consensus       283 ~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~  356 (690)
                                           .+...      +......+ ++.|..++++||+++||||++...+++.+.+.+.
T Consensus       143 ---------------------~l~~~------ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~  190 (255)
T PRK09674        143 ---------------------RLIRS------VGKSLASQMVLTGESITAQQAQQAGLVSEVFPPELTLERALQL  190 (255)
T ss_pred             ---------------------HHHHH------hCHHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHH
Confidence                                 01112      22223333 4578999999999999999999888776655443

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=99.31  E-value=1.8e-11  Score=128.86  Aligned_cols=168  Identities=15%  Similarity=0.179  Sum_probs=118.8

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC----CCCHHHHH--------------
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE--------------  198 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~----Gg~~~~~~--------------  198 (690)
                      .++.|++|+++.+=    ..|..+...+.++.+.++++..|+.|++|||+.++.    |+++....              
T Consensus        12 ~~~~v~~itlnrp~----~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~   87 (272)
T PRK06142         12 LADHVAQVTLNRPG----KGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARP   87 (272)
T ss_pred             ecCCEEEEEEcCCC----ccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccccccc
Confidence            35779999998762    122223345789999999999999999999998652    45543321              


Q ss_pred             ---------HHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEE
Q 005581          199 ---------EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQV  268 (690)
Q Consensus       199 ---------eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~  268 (690)
                               .+.+.+..+....|||||.++ .|..+|+.|+++||.+++.+.+.++...+            ++|+-|  
T Consensus        88 ~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~p--  153 (272)
T PRK06142         88 RTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREV------------DLGMVA--  153 (272)
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhh------------hhCCCC--
Confidence                     122334556678999999999 46688999999999999999999999987            788866  


Q ss_pred             EeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecch-
Q 005581          269 QRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYD-  346 (690)
Q Consensus       269 ~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~-  346 (690)
                             ..+..++                      +...+.      .....+ ++.|..++++||+++||||++... 
T Consensus       154 -------~~g~~~~----------------------l~~~~G------~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~  198 (272)
T PRK06142        154 -------DVGSLQR----------------------LPRIIG------DGHLRELALTGRDIDAAEAEKIGLVNRVYDDA  198 (272)
T ss_pred             -------CchHHHH----------------------HHHHhC------HHHHHHHHHhCCCcCHHHHHHcCCccEecCCH
Confidence                   2222211                      122222      222333 567899999999999999999874 


Q ss_pred             hHHHHHHHHHh
Q 005581          347 DEVISMLKERL  357 (690)
Q Consensus       347 de~~~~l~~~~  357 (690)
                      +++.+.+.+.+
T Consensus       199 ~~l~~~a~~~a  209 (272)
T PRK06142        199 DALLAAAHATA  209 (272)
T ss_pred             HHHHHHHHHHH
Confidence            77765554433

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=99.31  E-value=1.9e-11  Score=127.62  Aligned_cols=167  Identities=15%  Similarity=0.131  Sum_probs=118.7

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC-----CCCCHHHH------------HH
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-----LSCGWGKV------------EE  199 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s-----~Gg~~~~~------------~e  199 (690)
                      .++.|++|+++.+=    ..+..+...+.++.++++++..|+.|++|||.-.+     .|+++...            ..
T Consensus        13 ~~~~v~~itlnrp~----~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~   88 (256)
T PRK06143         13 DDRGVATLTIRNAG----SLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISR   88 (256)
T ss_pred             cCCCEEEEEEcCCc----ccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHH
Confidence            35789999999861    12222335578999999999999999999998854     24444331            11


Q ss_pred             HHHHHHHHhhcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccC
Q 005581          200 IRRHVVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG  278 (690)
Q Consensus       200 I~~aI~~~r~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~  278 (690)
                      +.+.+..+....|||||.+++ |..+|..|+++||.+++.+.+.++...+            ++|+ |.         .+
T Consensus        89 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~G~-p~---------~~  146 (256)
T PRK06143         89 LRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEV------------RVGI-PS---------VI  146 (256)
T ss_pred             HHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCcc------------ccCC-CC---------cc
Confidence            233455566779999999995 6689999999999999999999999887            6776 41         01


Q ss_pred             CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581          279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL  357 (690)
Q Consensus       279 ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~  357 (690)
                      ..+                      .+      .|-+......+ ++.|..++++||+++||||++...+++.+.+.+.+
T Consensus       147 ~~~----------------------~l------~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a  198 (256)
T PRK06143        147 HAA----------------------LL------PRLIGWARTRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLA  198 (256)
T ss_pred             HHH----------------------HH------HHhcCHHHHHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHH
Confidence            111                      01      11122333333 46789999999999999999998888776655443

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=99.31  E-value=2.1e-11  Score=127.76  Aligned_cols=166  Identities=20%  Similarity=0.164  Sum_probs=118.7

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH----------HHHHHH
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV----------EEIRRH  203 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~----------~eI~~a  203 (690)
                      ++.|++|.++.+=.    .+..+...+.++.++++++..|+.|++|||+..+    .|+++...          ..+.+.
T Consensus        15 ~~~v~~itlnrp~~----~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~   90 (261)
T PRK08138         15 ADGVALLRLNRPEA----RNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERY   90 (261)
T ss_pred             cCCEEEEEEcCCcc----cCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHH
Confidence            56789999987621    1222334578899999999999999999998754    24555331          123344


Q ss_pred             HHHHhhcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCccc
Q 005581          204 VVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLT  282 (690)
Q Consensus       204 I~~~r~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~  282 (690)
                      +..+...+|||||.+++ |..+|+.|+++||.+++.+.+.++...+            ++|+-|         ..+..+.
T Consensus        91 ~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p---------~~g~~~~  149 (261)
T PRK08138         91 WEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEI------------KVGLMP---------GAGGTQR  149 (261)
T ss_pred             HHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCccc------------ccccCC---------CCcHHHH
Confidence            55666789999999994 6688999999999999999999999887            777765         2221110


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581          283 RKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKER  356 (690)
Q Consensus       283 ~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~  356 (690)
                                            +...      +......+ ++.|..++++||+++||||++...+++.+...+.
T Consensus       150 ----------------------l~~~------vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~  196 (261)
T PRK08138        150 ----------------------LVRA------VGKFKAMRMALTGCMVPAPEALAIGLVSEVVEDEQTLPRALEL  196 (261)
T ss_pred             ----------------------HHHH------hCHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHH
Confidence                                  1222      22333333 4578999999999999999999888877655443

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=99.30  E-value=1.9e-11  Score=127.68  Aligned_cols=167  Identities=14%  Similarity=0.154  Sum_probs=119.0

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH----------HHHHHH
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV----------EEIRRH  203 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~----------~eI~~a  203 (690)
                      ++.|++|+++.+=    ..+..+...+.++.+.++++..|+.|++|||+...    .|+++...          ..+.+.
T Consensus        11 ~~~v~~itlnrp~----~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~   86 (257)
T PRK05862         11 RGRVGLITLNRPK----ALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITN   86 (257)
T ss_pred             eCCEEEEEEcCCc----ccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHH
Confidence            5679999998762    11222334578999999999999999999998764    24554322          122334


Q ss_pred             HHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCccc
Q 005581          204 VVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLT  282 (690)
Q Consensus       204 I~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~  282 (690)
                      +..+...+|||||.++ .|..+|+.|+++||.+++.+.+.++...+            ++|+-|         ..+..+ 
T Consensus        87 ~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~p---------~~g~~~-  144 (257)
T PRK05862         87 WEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEI------------KLGVLP---------GMGGSQ-  144 (257)
T ss_pred             HHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchh------------ccCcCC---------CccHHH-
Confidence            4556678999999999 56788999999999999999999999877            777755         111111 


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581          283 RKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL  357 (690)
Q Consensus       283 ~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~  357 (690)
                                           .+...+      ......+ ++.|..++++||+++||||++...+++.+...+.+
T Consensus       145 ---------------------~l~~~v------G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a  193 (257)
T PRK05862        145 ---------------------RLTRAV------GKAKAMDLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAA  193 (257)
T ss_pred             ---------------------HHHHHh------CHHHHHHHHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHH
Confidence                                 112222      2222233 56789999999999999999998888776655543

>PRK05869 enoyl-CoA hydratase; Validated

Probab=99.30  E-value=2.4e-11  Score=124.30  Aligned_cols=167  Identities=11%  Similarity=0.070  Sum_probs=121.2

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH------------HHH
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV------------EEI  200 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~------------~eI  200 (690)
                      .++.|++|+++.+  +  . +..+...+.++.+.++++..|++|++|||+..+    .|+++...            +.+
T Consensus        14 ~~~~i~~itlnrp--~--~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~   88 (222)
T PRK05869         14 QDAGLATLLLSRP--P--T-NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAARVR   88 (222)
T ss_pred             ccCCEEEEEECCC--C--C-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhhHHHHHHHH
Confidence            4678999999987  2  1 223345578999999999999999999998754    25554432            122


Q ss_pred             HHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCC
Q 005581          201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD  279 (690)
Q Consensus       201 ~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~e  279 (690)
                      .+.+.++...+|||||.++ .|..+|..|+++||.++|.+.+.++...+            ++|+-|         ..+.
T Consensus        89 ~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p---------~~g~  147 (222)
T PRK05869         89 QQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEI------------LAGLAP---------SGDG  147 (222)
T ss_pred             HHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchh------------ccCCCC---------CccH
Confidence            3455566778999999999 46688999999999999999999999877            677755         1111


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581          280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL  357 (690)
Q Consensus       280 p~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~  357 (690)
                      .+                      .+.      |.+......+ ++.|..++++||+++||||++...+++.+...+.+
T Consensus       148 ~~----------------------~l~------~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a  198 (222)
T PRK05869        148 MA----------------------RLT------RAAGPSRAKELVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWA  198 (222)
T ss_pred             HH----------------------HHH------HHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHHHH
Confidence            10                      011      2223333333 56789999999999999999998888877665544

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=99.30  E-value=2.7e-11  Score=126.63  Aligned_cols=168  Identities=19%  Similarity=0.191  Sum_probs=119.2

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH-----------HHHH
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV-----------EEIR  201 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~-----------~eI~  201 (690)
                      .++.|++|.++.+=    ..+..+...+.++.+.++++..|+.|++|||..+.    .|+++...           ..+.
T Consensus        11 ~~~~v~~i~lnrp~----~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   86 (259)
T PRK06688         11 LEDGVLTITINRPD----KKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVN   86 (259)
T ss_pred             EECCEEEEEecCcc----cccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHH
Confidence            35679999998751    11222334578999999999999999999998654    24444321           2234


Q ss_pred             HHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCc
Q 005581          202 RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQ  280 (690)
Q Consensus       202 ~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep  280 (690)
                      +.+..+...+|||||.++ .|.++|..|+++||.+++.+.+.++...+            ++|+-|         ..+..
T Consensus        87 ~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~------------~~G~~p---------~~g~~  145 (259)
T PRK06688         87 RFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFA------------KLGLCP---------DAGGS  145 (259)
T ss_pred             HHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchh------------hcCCCC---------Ccchh
Confidence            455566678999999999 57788999999999999999999999887            777765         11111


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581          281 LTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL  357 (690)
Q Consensus       281 ~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~  357 (690)
                      +.                      +...+.      .....+ ++.|..++++||++.||||++...+++.+.+.+.+
T Consensus       146 ~~----------------------l~~~~G------~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a  195 (259)
T PRK06688        146 AL----------------------LPRLIG------RARAAEMLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQA  195 (259)
T ss_pred             hH----------------------HHHHhh------HHHHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHH
Confidence            10                      111121      222222 46789999999999999999998887776655544

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=99.30  E-value=3.1e-11  Score=126.52  Aligned_cols=164  Identities=15%  Similarity=0.180  Sum_probs=118.5

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHH---------------
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVE---------------  198 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~---------------  198 (690)
                      .+.|++|+++.+=.    .|..+...+.++.+.++++..|+.|++|||+.++    .|+++....               
T Consensus        12 ~~~v~~itlnrp~~----~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~   87 (262)
T PRK07468         12 ARGVATLTLNRPEK----HNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEAR   87 (262)
T ss_pred             CCcEEEEEEcCccc----ccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHH
Confidence            35799999997621    2223345678899999999999999999998764    255554211               


Q ss_pred             HHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeecccccc
Q 005581          199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA  277 (690)
Q Consensus       199 eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa  277 (690)
                      .+.+.+..++..+|||||.++ .|..+|+.|+++||.+++.+.+.++...+            ++|+-|.         .
T Consensus        88 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~------------~~Gl~p~---------~  146 (262)
T PRK07468         88 RLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTET------------RLGLIPA---------T  146 (262)
T ss_pred             HHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchh------------ccCCCcc---------c
Confidence            123345566778999999999 46688999999999999999999999887            7787662         1


Q ss_pred             CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHH
Q 005581          278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKE  355 (690)
Q Consensus       278 ~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~  355 (690)
                      +.++                       +...      +......+ ++.|..++++||+++||||++...+++.+.+.+
T Consensus       147 g~~~-----------------------~~~~------vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~  196 (262)
T PRK07468        147 ISPY-----------------------VVAR------MGEANARRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEA  196 (262)
T ss_pred             chhh-----------------------HHhh------ccHHHHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHH
Confidence            1221                       1111      33333334 467899999999999999999988877655443

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=99.30  E-value=2.7e-11  Score=126.58  Aligned_cols=168  Identities=14%  Similarity=0.102  Sum_probs=119.0

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC-----CCCHHHH-----------HHH
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV-----------EEI  200 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~-----Gg~~~~~-----------~eI  200 (690)
                      .++.|++|+++.+=    ..|..+...+.++.++++.+..|+.|++|||+-+++     |+++...           ..+
T Consensus         8 ~~~~v~~itlnrp~----~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~   83 (256)
T TIGR03210         8 KRNGIAWIMINRPA----KMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPM   83 (256)
T ss_pred             eeCCEEEEEEcCCc----cccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHHH
Confidence            35679999998761    222233345788999999999999999999987652     5555432           112


Q ss_pred             HHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCC
Q 005581          201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD  279 (690)
Q Consensus       201 ~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~e  279 (690)
                      .+.+..+...+|||||.++ .|..+|..|+++||.+++.+.+.++...+            ++|+-+         ..+.
T Consensus        84 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~------------~~G~~~---------~~~~  142 (256)
T TIGR03210        84 EELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGP------------KVGSVD---------PGYG  142 (256)
T ss_pred             HHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccc------------cccccC---------CccH
Confidence            3445566678999999999 56788999999999999999999999877            666543         0000


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581          280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL  357 (690)
Q Consensus       280 p~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~  357 (690)
                      .+                      .+...      +......+ ++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus       143 ~~----------------------~l~~~------vG~~~A~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a  193 (256)
T TIGR03210       143 TA----------------------LLARV------VGEKKAREIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWC  193 (256)
T ss_pred             HH----------------------HHHHH------hCHHHHHHHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHH
Confidence            00                      01222      22233333 45689999999999999999998888776655544

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=99.29  E-value=3.9e-11  Score=125.98  Aligned_cols=167  Identities=14%  Similarity=0.157  Sum_probs=117.2

Q ss_pred             CCeEEEEEEceeeccccccccCCC-CCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH---------------
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSG-LSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV---------------  197 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~-~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~---------------  197 (690)
                      ++.|++|+++.+=..    +..+. ..+.++.+.++++..||.|++|||...+    .|+++...               
T Consensus        10 ~~~v~~itlnrp~~~----Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   85 (266)
T PRK09245         10 DGHIVTLTMNRPETR----NALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPADIR   85 (266)
T ss_pred             ECCEEEEEECCcccc----cCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccchhHH
Confidence            568999999986221    11121 2467899999999999999999998764    24444322               


Q ss_pred             HH----HHHHHHHHhhcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeec
Q 005581          198 EE----IRRHVVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIG  272 (690)
Q Consensus       198 ~e----I~~aI~~~r~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G  272 (690)
                      ..    +.+.+..+....|||||.+++ |..+|+.|+++||.+++.+.+.++...+            ++|+-|      
T Consensus        86 ~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~G~~p------  147 (266)
T PRK09245         86 QGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFV------------KLGLIP------  147 (266)
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEccccc------------ccCcCC------
Confidence            11    223345566779999999994 6688999999999999999999999877            777765      


Q ss_pred             cccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHH
Q 005581          273 KYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVIS  351 (690)
Q Consensus       273 ~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~  351 (690)
                         ..+..+.                      +...|...      ...+ ++.|..++++||++.||||++...+++.+
T Consensus       148 ---~~g~~~~----------------------l~~~vG~~------~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~  196 (266)
T PRK09245        148 ---GDGGAWL----------------------LPRIIGMA------RAAEMAFTGDAIDAATALEWGLVSRVVPADQLLP  196 (266)
T ss_pred             ---Ccchhhh----------------------HHHHhhHH------HHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHH
Confidence               2222221                      11222222      2222 46789999999999999999998888776


Q ss_pred             HHHHHh
Q 005581          352 MLKERL  357 (690)
Q Consensus       352 ~l~~~~  357 (690)
                      .+.+.+
T Consensus       197 ~a~~~a  202 (266)
T PRK09245        197 AARALA  202 (266)
T ss_pred             HHHHHH
Confidence            655443

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=99.29  E-value=2.7e-11  Score=126.43  Aligned_cols=166  Identities=16%  Similarity=0.098  Sum_probs=116.7

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC----CCCHHHH-----------HH---
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV-----------EE---  199 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~----Gg~~~~~-----------~e---  199 (690)
                      ++.|++|+++.+=    ..|..+...+.++.++|+++..|+ +++|||+..+.    |+++...           ..   
T Consensus         6 ~~~v~~itlnrp~----~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~   80 (256)
T TIGR02280         6 EAGVARLTLNRPD----KLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIET   80 (256)
T ss_pred             ECCEEEEEecCcc----cccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHHH
Confidence            5789999998761    112223345789999999999999 99999987652    4444321           11   


Q ss_pred             -HHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeecccccc
Q 005581          200 -IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA  277 (690)
Q Consensus       200 -I~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa  277 (690)
                       +...+..+...+|||||.++ .|..+|+.|+++||.++|.+++.++...+            ++|+-|.         .
T Consensus        81 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~------------~lG~~p~---------~  139 (256)
T TIGR02280        81 FYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFA------------KIGLIPD---------S  139 (256)
T ss_pred             HHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhh------------hcCCCCC---------c
Confidence             12234556678999999999 56688999999999999999999998876            7787651         1


Q ss_pred             CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581          278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKER  356 (690)
Q Consensus       278 ~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~  356 (690)
                      +..+.                      +...|      ......+ ++.|+.++++||+++||||++...+++.+.+.+.
T Consensus       140 g~~~~----------------------l~~~v------G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~  191 (256)
T TIGR02280       140 GGTWS----------------------LPRLV------GRARAMGLAMLGEKLDARTAASWGLIWQVVDDAALMDEAQAL  191 (256)
T ss_pred             cHHHH----------------------HHHHh------CHHHHHHHHHcCCCCCHHHHHHcCCcceeeChHHHHHHHHHH
Confidence            11110                      11112      2222233 4678999999999999999999888877665544


Q ss_pred             h
Q 005581          357 L  357 (690)
Q Consensus       357 ~  357 (690)
                      +
T Consensus       192 a  192 (256)
T TIGR02280       192 A  192 (256)
T ss_pred             H
Confidence            3

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PLN02888 enoyl-CoA hydratase

Probab=99.29  E-value=3.5e-11  Score=126.33  Aligned_cols=167  Identities=18%  Similarity=0.170  Sum_probs=117.6

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHHH---------HHHHH
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVEE---------IRRHV  204 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~e---------I~~aI  204 (690)
                      ++.|++|+++.+=    ..|..+...+.++.++++++..|++|++|||+-.+    .|+++....+         ..+.+
T Consensus        17 ~~~v~~itlnrp~----~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~   92 (265)
T PLN02888         17 RNGIATITINRPK----ALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPV   92 (265)
T ss_pred             cCCEEEEEEcCCC----cccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHHHH
Confidence            5678888888751    11222334578899999999999999999998764    2556543221         12344


Q ss_pred             HHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccC
Q 005581          205 VDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTR  283 (690)
Q Consensus       205 ~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~  283 (690)
                      ..+...+|||||.++ .|..+|..|+++||.+++.+++.++...+            ++|+-|         ..+..+. 
T Consensus        93 ~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~------------~~Gl~p---------~~g~~~~-  150 (265)
T PLN02888         93 AQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHA------------KFGIFP---------SWGLSQK-  150 (265)
T ss_pred             HHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccc------------cccCCC---------CccHhhH-
Confidence            556677899999999 46688999999999999999999988776            777755         1111110 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581          284 KTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL  357 (690)
Q Consensus       284 ~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~  357 (690)
                                           +...      +......+ ++.|..++++||+++||||++...+++.+...+.+
T Consensus       151 ---------------------l~~~------vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a  198 (265)
T PLN02888        151 ---------------------LSRI------IGANRAREVSLTAMPLTAETAERWGLVNHVVEESELLKKAREVA  198 (265)
T ss_pred             ---------------------HHHH------hCHHHHHHHHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHH
Confidence                                 1112      22223333 46789999999999999999998887766554443

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=99.28  E-value=3.3e-11  Score=128.53  Aligned_cols=167  Identities=14%  Similarity=0.078  Sum_probs=118.3

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHH---------------
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVE---------------  198 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~---------------  198 (690)
                      ++.|++|+++.+=.    .|..+.-.+.+|.++|+.+..|+.|++|||.-++    .|+++....               
T Consensus        11 ~~~v~~itlnrp~~----~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~   86 (296)
T PRK08260         11 ADGIATITLNRPDK----LNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPVEAD   86 (296)
T ss_pred             eCCEEEEEeCCCcc----cCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccccccc
Confidence            57899999987621    1222334577899999999999999999998764    244443210               


Q ss_pred             ----------HH----HHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcC
Q 005581          199 ----------EI----RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVG  263 (690)
Q Consensus       199 ----------eI----~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlG  263 (690)
                                .+    .+.+..+....|||||.++ .|..+|+.|+++||.+++.+.+.++...+            ++|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~------------~~G  154 (296)
T PRK08260         87 EEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFG------------RRG  154 (296)
T ss_pred             cccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchh------------hcC
Confidence                      11    2244556677899999999 57788999999999999999999999877            778


Q ss_pred             ceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeE
Q 005581          264 IEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITN  342 (690)
Q Consensus       264 I~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~  342 (690)
                      +-|         ..+.+++                      +...      +......+ ++.|+.++++||+++||||+
T Consensus       155 l~p---------~~g~~~~----------------------l~r~------vG~~~A~~llltg~~~~a~eA~~~GLv~~  197 (296)
T PRK08260        155 IVP---------EAASSWF----------------------LPRL------VGLQTALEWVYSGRVFDAQEALDGGLVRS  197 (296)
T ss_pred             cCC---------Ccchhhh----------------------HHHh------hCHHHHHHHHHcCCccCHHHHHHCCCcee
Confidence            766         2222221                      1111      22222333 56789999999999999999


Q ss_pred             ecchhHHHHHHHHHh
Q 005581          343 VLYDDEVISMLKERL  357 (690)
Q Consensus       343 i~~~de~~~~l~~~~  357 (690)
                      +...+++.+.+.+.+
T Consensus       198 vv~~~~l~~~a~~~a  212 (296)
T PRK08260        198 VHPPDELLPAARALA  212 (296)
T ss_pred             ecCHHHHHHHHHHHH
Confidence            998888776655443

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=99.28  E-value=3.2e-11  Score=126.17  Aligned_cols=167  Identities=14%  Similarity=0.078  Sum_probs=117.9

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC-----CCCHHHHH-------------H
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKVE-------------E  199 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~-----Gg~~~~~~-------------e  199 (690)
                      ++.|++|+++.+=    ..|..+...+.++.++++++..|+.|++|||+-.++     |+++....             .
T Consensus        10 ~~~v~~itlnrp~----~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~   85 (259)
T TIGR01929        10 TDGIAKITINRPQ----VRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLN   85 (259)
T ss_pred             CCCEEEEEecCCc----cccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHH
Confidence            5789999999762    112223345788999999999999999999988652     45543211             1


Q ss_pred             HHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccC
Q 005581          200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG  278 (690)
Q Consensus       200 I~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~  278 (690)
                      +.+.+..+...+|||||.++ .|..+|+.|+++||.+++.+.+.++...+            ++|+-|         ..+
T Consensus        86 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~G~~p---------~~~  144 (259)
T TIGR01929        86 VLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGP------------KVGSFD---------GGY  144 (259)
T ss_pred             HHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCccc------------ccccCC---------Ccc
Confidence            22344456677999999999 56788999999999999999999999877            677654         111


Q ss_pred             CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581          279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL  357 (690)
Q Consensus       279 ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~  357 (690)
                      ...                      .+...+...      ...+ ++.|..++++||+++||||++...+++.+.+.+.+
T Consensus       145 ~~~----------------------~l~~~vG~~------~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a  196 (259)
T TIGR01929       145 GSS----------------------YLARIVGQK------KAREIWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWC  196 (259)
T ss_pred             HHH----------------------HHHHHhHHH------HHHHHHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHH
Confidence            110                      122222222      2223 46789999999999999999998888776655443

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=99.28  E-value=3e-11  Score=126.86  Aligned_cols=166  Identities=11%  Similarity=0.127  Sum_probs=119.0

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH---------------H
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV---------------E  198 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~---------------~  198 (690)
                      ++.|++|+++.+=.    .+..+...+.++.++++.+..|+.|++|||.-.+    .|+++...               .
T Consensus        13 ~~~v~~itlnrp~~----~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~   88 (265)
T PRK05674         13 PRGFATLWLSRADK----NNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDAR   88 (265)
T ss_pred             CCCEEEEEecCccc----ccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHH
Confidence            35799999987621    1222334578899999999999999999998764    34554321               1


Q ss_pred             HHHHHHHHHhhcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeecccccc
Q 005581          199 EIRRHVVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA  277 (690)
Q Consensus       199 eI~~aI~~~r~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa  277 (690)
                      .+.+.+..++...|||||.+++ |..+|..|+++||.+++.+.+.++...+            ++|+-|.         .
T Consensus        89 ~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~------------~~Gi~p~---------~  147 (265)
T PRK05674         89 ELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEV------------RIGLAPA---------V  147 (265)
T ss_pred             HHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCccc------------ccCCCcc---------h
Confidence            2344556677789999999995 6688999999999999999999999877            7777551         0


Q ss_pred             CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581          278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKER  356 (690)
Q Consensus       278 ~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~  356 (690)
                      +.++                       +...|.      .....+ ++.|+.++++||+++||||++...+++.+.+.+.
T Consensus       148 ~~~~-----------------------l~~~vG------~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~  198 (265)
T PRK05674        148 ISPF-----------------------VVKAIG------ERAARRYALTAERFDGRRARELGLLAESYPAAELEAQVEAW  198 (265)
T ss_pred             hHHH-----------------------HHHHhC------HHHHHHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHH
Confidence            0000                       122222      222223 4678999999999999999999888877766554


Q ss_pred             h
Q 005581          357 L  357 (690)
Q Consensus       357 ~  357 (690)
                      +
T Consensus       199 a  199 (265)
T PRK05674        199 I  199 (265)
T ss_pred             H
Confidence            4

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=99.28  E-value=2.8e-11  Score=127.72  Aligned_cols=166  Identities=13%  Similarity=0.170  Sum_probs=117.3

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC----CCCHHHHH--------------
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE--------------  198 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~----Gg~~~~~~--------------  198 (690)
                      .++.|++|.++.+=    ..|..+...+.++.++|+++..|+.|++|||...+.    |+++....              
T Consensus        14 ~~~~v~~itlnrp~----~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~   89 (275)
T PLN02664         14 PNSSVFHLNLNRPS----QRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRS   89 (275)
T ss_pred             CCCCEEEEEECCCC----ccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhh
Confidence            46789999999872    122223345789999999999999999999987652    45543221              


Q ss_pred             --H-------HHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEE
Q 005581          199 --E-------IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQV  268 (690)
Q Consensus       199 --e-------I~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~  268 (690)
                        .       +.+.+..+...+|||||.++ .|..+|..|+++||.+++.+++.|+...+            ++|+.|  
T Consensus        90 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~------------~~Gl~p--  155 (275)
T PLN02664         90 GERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEV------------DLAITA--  155 (275)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHH------------hhCCCC--
Confidence              1       12334456678999999999 57788999999999999999999999877            778765  


Q ss_pred             EeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecch-
Q 005581          269 QRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYD-  346 (690)
Q Consensus       269 ~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~-  346 (690)
                             ..+..+.                      +...      +......+ ++.|..++++||++.||||++... 
T Consensus       156 -------~~g~~~~----------------------l~~~------vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~  200 (275)
T PLN02664        156 -------DLGTLQR----------------------LPSI------VGYGNAMELALTGRRFSGSEAKELGLVSRVFGSK  200 (275)
T ss_pred             -------CccHHHH----------------------HHHH------hCHHHHHHHHHhCCCCCHHHHHHcCCCceeeCCh
Confidence                   1111110                      1112      22222333 467899999999999999999874 


Q ss_pred             hHHHHHHHH
Q 005581          347 DEVISMLKE  355 (690)
Q Consensus       347 de~~~~l~~  355 (690)
                      +++.+.+.+
T Consensus       201 ~~l~~~~~~  209 (275)
T PLN02664        201 EDLDEGVRL  209 (275)
T ss_pred             hHHHHHHHH
Confidence            666654443

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=99.28  E-value=3.3e-11  Score=126.77  Aligned_cols=167  Identities=14%  Similarity=0.136  Sum_probs=119.6

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC-----CCCHHHH----------HH---
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV----------EE---  199 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~-----Gg~~~~~----------~e---  199 (690)
                      ++.|++|.++.+=    ..|..+...+.++.+.++++..|+.|++|||+-...     |+++...          ..   
T Consensus        18 ~~~v~~itlnrp~----~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~   93 (269)
T PRK06127         18 TGGLGRITFNNPA----RHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQ   93 (269)
T ss_pred             ECCEEEEEecCCC----ccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHH
Confidence            5679999998762    222233456789999999999999999999998641     5555321          11   


Q ss_pred             -HHHHHHHHhhcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeecccccc
Q 005581          200 -IRRHVVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA  277 (690)
Q Consensus       200 -I~~aI~~~r~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa  277 (690)
                       +...+..++..+|||||.+++ |..+|..|+++||.+++.+.+.++...+            ++|+-|         ..
T Consensus        94 ~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~------------~~Gl~p---------~~  152 (269)
T PRK06127         94 AVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAA------------RLGLGY---------GY  152 (269)
T ss_pred             HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchh------------hhCCCC---------Cc
Confidence             223445566789999999994 6688999999999999999999999877            777755         11


Q ss_pred             CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581          278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKER  356 (690)
Q Consensus       278 ~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~  356 (690)
                      +..+                      .+...+      ......+ ++.|..++++||+++||||++...+++.+.+.+.
T Consensus       153 g~~~----------------------~l~~~v------G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~  204 (269)
T PRK06127        153 DGVK----------------------NLVDLV------GPSAAKDLFYTARRFDAAEALRIGLVHRVTAADDLETALADY  204 (269)
T ss_pred             cHHH----------------------HHHHHh------CHHHHHHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHH
Confidence            1111                      011222      2223333 5678999999999999999999888887665554


Q ss_pred             h
Q 005581          357 L  357 (690)
Q Consensus       357 ~  357 (690)
                      +
T Consensus       205 a  205 (269)
T PRK06127        205 A  205 (269)
T ss_pred             H
Confidence            4

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=99.28  E-value=3.7e-11  Score=125.35  Aligned_cols=166  Identities=15%  Similarity=0.125  Sum_probs=116.5

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC----CCCHHHHH--------H----HH
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE--------E----IR  201 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~----Gg~~~~~~--------e----I~  201 (690)
                      ++.|++|+++.+=.    .|..+...+.++.++|+++..|++|++|||...+.    |+++....        +    ..
T Consensus         6 ~~~v~~itlnrp~~----~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~   81 (255)
T PRK06563          6 RGHVLLIGLDRPAK----RNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGI   81 (255)
T ss_pred             ECCEEEEEECCccc----ccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhh
Confidence            56899999998721    12223345788999999999999999999987642    45543211        0    11


Q ss_pred             HHH-HHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCC
Q 005581          202 RHV-VDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD  279 (690)
Q Consensus       202 ~aI-~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~e  279 (690)
                      +.+ ..++...|||||.++ .|..+|..|+++||.++|.+++.++...+            ++|+-|         ..+.
T Consensus        82 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~------------~~Gl~p---------~~g~  140 (255)
T PRK06563         82 DPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEV------------QRGILP---------FGGA  140 (255)
T ss_pred             HHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhh------------hcCCCC---------CccH
Confidence            122 235567899999999 57789999999999999999999999877            777754         1111


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581          280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKER  356 (690)
Q Consensus       280 p~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~  356 (690)
                      .+                      .+...|..      ....+ ++.|..++++||++.||||++...+++.+...+.
T Consensus       141 ~~----------------------~l~~~vG~------~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~  190 (255)
T PRK06563        141 TL----------------------RFPQAAGW------GNAMRYLLTGDEFDAQEALRLGLVQEVVPPGEQLERAIEL  190 (255)
T ss_pred             HH----------------------HHHHHhhH------HHHHHHHHcCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHH
Confidence            11                      12222222      22233 5678999999999999999999888877655543

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=99.28  E-value=4.5e-11  Score=124.50  Aligned_cols=165  Identities=14%  Similarity=0.138  Sum_probs=117.3

Q ss_pred             eEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH-----------HHHHHHH
Q 005581          140 SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV-----------EEIRRHV  204 (690)
Q Consensus       140 ~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~-----------~eI~~aI  204 (690)
                      .|++|+++.+=    ..+-.+...+.++.++++++..|++|++|||.-..    .|+++...           ..+.+.+
T Consensus        15 ~v~~itlnrp~----~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~   90 (251)
T PRK06023         15 GVQVIRFNRPE----KKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFL   90 (251)
T ss_pred             cEEEEEecCcc----cccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHH
Confidence            49999998762    11222334578899999999999999999998753    34554321           1233455


Q ss_pred             HHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccC
Q 005581          205 VDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTR  283 (690)
Q Consensus       205 ~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~  283 (690)
                      ..++..+|||||.++ .|..+|..|+++||.+++.+.+.|+...+            ++|+-|         ..+..+. 
T Consensus        91 ~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~------------~~Gl~p---------~~g~~~~-  148 (251)
T PRK06023         91 IALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFV------------DLALVP---------EAGSSLL-  148 (251)
T ss_pred             HHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCccc------------ccCCCC---------CchHHHH-
Confidence            667778999999999 57788999999999999999999998877            777755         1111110 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581          284 KTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL  357 (690)
Q Consensus       284 ~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~  357 (690)
                                           +...+      ......+ ++.|+.++++||+++||||++...+++.+.+.+.+
T Consensus       149 ---------------------l~~~~------g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a  196 (251)
T PRK06023        149 ---------------------APRLM------GHQRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAA  196 (251)
T ss_pred             ---------------------HHHHH------hHHHHHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHH
Confidence                                 11111      2222333 45789999999999999999998888776554443

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=99.27  E-value=3.1e-11  Score=126.31  Aligned_cols=168  Identities=11%  Similarity=0.135  Sum_probs=119.0

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC-----CCCCHHHH------------HH
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-----LSCGWGKV------------EE  199 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s-----~Gg~~~~~------------~e  199 (690)
                      .++.|++|+++.+=.    .|..+...+.++.+.|+++..||.|++|||+.++     .|+++...            ..
T Consensus         9 ~~~~v~~itlnrp~~----~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~   84 (260)
T PRK05980          9 IRDGIALLTLNRPEK----LNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRD   84 (260)
T ss_pred             EECCEEEEEECCccc----ccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHH
Confidence            357799999987621    1222334578899999999999999999999865     24554321            11


Q ss_pred             H----HHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccc
Q 005581          200 I----RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKY  274 (690)
Q Consensus       200 I----~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~y  274 (690)
                      +    .+.+..+...+|||||.++ .|..+|..|+++||.+++.+.+.++...+            ++|+-|        
T Consensus        85 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~------------~~Gl~p--------  144 (260)
T PRK05980         85 FVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEI------------RLGMPP--------  144 (260)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCccc------------ccCCCC--------
Confidence            1    1234455567899999999 56788999999999999999999999888            777765        


Q ss_pred             cccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHH
Q 005581          275 KSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISML  353 (690)
Q Consensus       275 Ksa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l  353 (690)
                       ..+..+.                      +      .|.+......+ ++.|..++++||+++||||++...+++.+.+
T Consensus       145 -~~g~~~~----------------------l------~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a  195 (260)
T PRK05980        145 -TFGGTQR----------------------L------PRLAGRKRALELLLTGDAFSAERALEIGLVNAVVPHEELLPAA  195 (260)
T ss_pred             -CchHhhH----------------------H------HhhcCHHHHHHHHHcCCccCHHHHHHcCCCCcccCHHHHHHHH
Confidence             2222211                      1      12223333334 4678999999999999999999888887766


Q ss_pred             HHHh
Q 005581          354 KERL  357 (690)
Q Consensus       354 ~~~~  357 (690)
                      .+.+
T Consensus       196 ~~~a  199 (260)
T PRK05980        196 RALA  199 (260)
T ss_pred             HHHH
Confidence            5544

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=99.27  E-value=4.6e-11  Score=125.81  Aligned_cols=167  Identities=14%  Similarity=0.144  Sum_probs=117.9

Q ss_pred             CC-eEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHH--------------
Q 005581          138 KG-SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVE--------------  198 (690)
Q Consensus       138 ~~-~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~--------------  198 (690)
                      ++ .|++|+++.+=    ..+..+...+.++.+.|+++..|+.|++|||+..+    .|+++....              
T Consensus        12 ~~~~v~~itlnrp~----~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~   87 (272)
T PRK06210         12 ADSGVAVITLNRPD----RLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVR   87 (272)
T ss_pred             CCCCEEEEEeCCcc----cccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccccccccch
Confidence            45 79999998761    12222334578999999999999999999998754    245544321              


Q ss_pred             --------HHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEE
Q 005581          199 --------EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQ  269 (690)
Q Consensus       199 --------eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~  269 (690)
                              .+.+.+..+...+|||||.++ .|..+|..|+++||.+++.+.+.++...+            ++|+-|   
T Consensus        88 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~------------~~Gl~p---  152 (272)
T PRK06210         88 PFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFA------------RRGLIA---  152 (272)
T ss_pred             hhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHH------------hcCCCC---
Confidence                    011224456667999999999 57788999999999999999999998766            677755   


Q ss_pred             eeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhH
Q 005581          270 RIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDE  348 (690)
Q Consensus       270 ~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de  348 (690)
                            ..+.++.                      +.      |-+......+ ++.|..++++||++.||||++...++
T Consensus       153 ------~~g~~~~----------------------l~------~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~  198 (272)
T PRK06210        153 ------EHGISWI----------------------LP------RLVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDE  198 (272)
T ss_pred             ------CCchhhh----------------------hH------hhhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHH
Confidence                  1122221                      11      1122333333 46789999999999999999998888


Q ss_pred             HHHHHHHHh
Q 005581          349 VISMLKERL  357 (690)
Q Consensus       349 ~~~~l~~~~  357 (690)
                      +.+.+.+.+
T Consensus       199 l~~~a~~~a  207 (272)
T PRK06210        199 LMERTLAYA  207 (272)
T ss_pred             HHHHHHHHH
Confidence            776655544

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=99.27  E-value=2.7e-11  Score=125.48  Aligned_cols=168  Identities=18%  Similarity=0.190  Sum_probs=120.8

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH------------HHHH
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV------------EEIR  201 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~------------~eI~  201 (690)
                      ++.|++|.++.+=.    .+..+...+.++.++|+.+..|++|++|++.-..    .|+++...            ..+.
T Consensus         5 ~~~v~~i~ln~p~~----~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~   80 (245)
T PF00378_consen    5 EDGVATITLNRPEK----RNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQ   80 (245)
T ss_dssp             ETTEEEEEEECGGG----TTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHH
T ss_pred             ECCEEEEEECCCCC----CCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhccccccccccchhhc
Confidence            57899999998822    1222334578999999999999999988887543    25565433            2345


Q ss_pred             HHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCc
Q 005581          202 RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQ  280 (690)
Q Consensus       202 ~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep  280 (690)
                      +.+..+...+|||||.++ .|..+|..++++||.+++.+.+.++...+            ++|+-|         ..+..
T Consensus        81 ~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~------------~~G~~p---------~~g~~  139 (245)
T PF00378_consen   81 ELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEV------------RLGIFP---------GAGGT  139 (245)
T ss_dssp             HHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGG------------GGTSSS---------TSTHH
T ss_pred             cccccchhhhhheeecccccccccccccccccceEEeecccceeeeec------------ccCccc---------ccccc
Confidence            556667778999999999 46688999999999999999999999988            777766         22111


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581          281 LTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL  357 (690)
Q Consensus       281 ~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~  357 (690)
                      +                      .+...+...+.     .+-++.|..++++||++.||||++...+++.+.+.+.+
T Consensus       140 ~----------------------~l~r~~g~~~a-----~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a  189 (245)
T PF00378_consen  140 F----------------------RLPRLIGPSRA-----RELLLTGEPISAEEALELGLVDEVVPDEELDEEALELA  189 (245)
T ss_dssp             H----------------------HHHHHHHHHHH-----HHHHHHTCEEEHHHHHHTTSSSEEESGGGHHHHHHHHH
T ss_pred             c----------------------ccceeeecccc-----cccccccccchhHHHHhhcceeEEcCchhhhHHHHHHH
Confidence            1                      12222222221     12246789999999999999999999888776655443

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=99.27  E-value=3.7e-11  Score=125.45  Aligned_cols=167  Identities=16%  Similarity=0.129  Sum_probs=120.0

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC----CCCHHHH-------------HH
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV-------------EE  199 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~----Gg~~~~~-------------~e  199 (690)
                      .++.|++|+++.+  +.   +..+...+.++.++++++..|+.|++|||+..+.    |+++...             ..
T Consensus         8 ~~~~v~~itl~rp--~~---Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   82 (257)
T PRK07658          8 VEDHVAVITLNHP--PA---NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQL   82 (257)
T ss_pred             eeCCEEEEEECCC--CC---CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHH
Confidence            3678999999987  21   2223355788999999999999999999987642    4554321             12


Q ss_pred             HHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccC
Q 005581          200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG  278 (690)
Q Consensus       200 I~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~  278 (690)
                      ..+.+..+...+|||||.++ .|..+|+.|+++||.+++.+++.++...+            ++|+-|         ..+
T Consensus        83 ~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p---------~~g  141 (257)
T PRK07658         83 GQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPEL------------NLGLIP---------GFA  141 (257)
T ss_pred             HHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCccc------------ccCCCC---------CCc
Confidence            23455566678999999999 56788999999999999999999999877            777755         111


Q ss_pred             CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581          279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL  357 (690)
Q Consensus       279 ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~  357 (690)
                      ..+                      .+...|      ......+ ++.|..++++||++.||||++...+++.+.+.+.+
T Consensus       142 ~~~----------------------~l~~~v------G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a  193 (257)
T PRK07658        142 GTQ----------------------RLPRYV------GKAKALEMMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLA  193 (257)
T ss_pred             HHH----------------------HHHHHh------CHHHHHHHHHcCCCcCHHHHHHcCCcCeecChhHHHHHHHHHH
Confidence            111                      011222      2222333 45789999999999999999998887776655543

>PRK08139 enoyl-CoA hydratase; Validated

Probab=99.27  E-value=5.2e-11  Score=125.08  Aligned_cols=166  Identities=15%  Similarity=0.167  Sum_probs=117.6

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC----CCCHHHH---------H----HH
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------E----EI  200 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~----Gg~~~~~---------~----eI  200 (690)
                      ++.|++|+++.+=    ..|..+.-.+.++.+.++++..|+.|++|||...+.    |+++...         .    .+
T Consensus        18 ~~~v~~itlnrp~----~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~   93 (266)
T PRK08139         18 RDGVATLTLNRPQ----AFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARC   93 (266)
T ss_pred             eCCEEEEEeCCcc----cccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHHHH
Confidence            5678999998762    112223345788999999999999999999987652    4554321         1    12


Q ss_pred             HHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCC
Q 005581          201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD  279 (690)
Q Consensus       201 ~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~e  279 (690)
                      .+.+..+...+|||||.++ .|..+|..|+++||.+++.+++.++...+            ++|+-+         ..+.
T Consensus        94 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p---------~~~~  152 (266)
T PRK08139         94 SRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGV------------NIGLFC---------STPM  152 (266)
T ss_pred             HHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCccc------------CcCCCC---------CccH
Confidence            2345556678999999999 56788999999999999999999999877            677744         0000


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581          280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL  357 (690)
Q Consensus       280 p~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~  357 (690)
                       +                      .+.+.|      ......+ ++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus       153 -~----------------------~l~r~v------G~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a  202 (266)
T PRK08139        153 -V----------------------ALSRNV------PRKQAMEMLLTGEFIDAATAREWGLVNRVVPADALDAAVARLA  202 (266)
T ss_pred             -H----------------------HHHHHh------CHHHHHHHHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHH
Confidence             0                      011222      2223333 46789999999999999999998888776655443

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=99.27  E-value=3.7e-11  Score=125.70  Aligned_cols=168  Identities=13%  Similarity=0.130  Sum_probs=118.3

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC-----CCCCHHHH------------HH
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-----LSCGWGKV------------EE  199 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s-----~Gg~~~~~------------~e  199 (690)
                      .++.|++|+++.+=.    .|..+...+.++.++++++..|++|++|||+-.+     .|+++...            ..
T Consensus        10 ~~~~v~~itlnrp~~----~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~   85 (260)
T PRK05809         10 KEGHIAVVTINRPKA----LNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLL   85 (260)
T ss_pred             EeCCEEEEEECCCcc----cCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHH
Confidence            356799999997621    1222334578899999999999999999998754     24444321            11


Q ss_pred             HHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccC
Q 005581          200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG  278 (690)
Q Consensus       200 I~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~  278 (690)
                      ..+.+..+...+|||||.++ .|..+|+.|+++||.+++.+++.++...+            ++|+-|         ..+
T Consensus        86 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~------------~~Gl~p---------~~g  144 (260)
T PRK05809         86 GNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEV------------GLGITP---------GFG  144 (260)
T ss_pred             HHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCccc------------ccCCCC---------Ccc
Confidence            23345556677999999999 56788999999999999999999998877            677755         111


Q ss_pred             CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581          279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL  357 (690)
Q Consensus       279 ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~  357 (690)
                      ..+.                      +.      |.+......+ ++.|..++++||++.||||++...+++.+...+.+
T Consensus       145 ~~~~----------------------l~------~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a  196 (260)
T PRK05809        145 GTQR----------------------LA------RIVGPGKAKELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALA  196 (260)
T ss_pred             HHHH----------------------HH------HHhCHHHHHHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHH
Confidence            1110                      11      1122222333 46789999999999999999998888776655443

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=99.27  E-value=3.9e-11  Score=125.46  Aligned_cols=166  Identities=14%  Similarity=0.076  Sum_probs=119.5

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC-----CCCCHHHH------------HH
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-----LSCGWGKV------------EE  199 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s-----~Gg~~~~~------------~e  199 (690)
                      .++.|++|+++.+  +.   |..+...+.++.++++++..|+.|++|||+..+     .|+++...            ..
T Consensus         9 ~~~~v~~itlnrp--~~---Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~   83 (258)
T PRK09076          9 IDGHVAILTLNNP--PA---NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARR   83 (258)
T ss_pred             EECCEEEEEECCC--Cc---CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHH
Confidence            3578999999987  21   223335678899999999999999999999854     24555331            11


Q ss_pred             HHHHHHHHhhcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccC
Q 005581          200 IRRHVVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG  278 (690)
Q Consensus       200 I~~aI~~~r~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~  278 (690)
                      +.+.+..+....|||||.+++ |..+|..|+++||.+++.+.+.|+...+            ++|+-|         ..+
T Consensus        84 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~p---------~~g  142 (258)
T PRK09076         84 FGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEA------------SVGLLP---------CAG  142 (258)
T ss_pred             HHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCccc------------ccCCCC---------Ccc
Confidence            334556677789999999995 6688999999999999999999999888            778765         111


Q ss_pred             CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581          279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKER  356 (690)
Q Consensus       279 ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~  356 (690)
                      ..++                      +...|      ......+ ++.|..++++||++.||||++...+++.+...+.
T Consensus       143 ~~~~----------------------l~~~i------G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~  193 (258)
T PRK09076        143 GTQN----------------------LPWLV------GEGWAKRMILCGERVDAATALRIGLVEEVVEKGEAREAALAL  193 (258)
T ss_pred             HHHH----------------------HHHHh------CHHHHHHHHHcCCcCCHHHHHHCCCCceecCchhHHHHHHHH
Confidence            1110                      11222      2222233 4578999999999999999999888776655443

>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=99.27  E-value=2.3e-11  Score=124.67  Aligned_cols=168  Identities=15%  Similarity=0.149  Sum_probs=123.1

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHHH----------HHH
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVEE----------IRR  202 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~e----------I~~  202 (690)
                      +++.|.+|.||.|    ...+.....++.++.+++.+..+|+.+++|||....    .|.++.....          .-+
T Consensus        43 ~d~~I~lItlNRP----~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~~~  118 (290)
T KOG1680|consen   43 EDNGIALITLNRP----KALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIFLR  118 (290)
T ss_pred             cCCCeEEEEeCCh----HHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccccccc
Confidence            5789999999988    233334456788999999999999999999998754    2445544433          111


Q ss_pred             HHHHHhhcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcc
Q 005581          203 HVVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQL  281 (690)
Q Consensus       203 aI~~~r~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~  281 (690)
                      .......-.|||||.+++ |-.+|.-||++||.+||.|++.||....            ++||-|         +.+-+-
T Consensus       119 ~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~------------~~Gi~p---------~~GGT~  177 (290)
T KOG1680|consen  119 VWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEI------------RMGIIP---------SWGGTQ  177 (290)
T ss_pred             hhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeeccccc------------ccCCcc---------CCCchh
Confidence            122222346999999995 5688999999999999999999999988            777766         444332


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581          282 TRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKER  356 (690)
Q Consensus       282 ~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~  356 (690)
                                            .+...|..+|.+     +-++.+..++++||++.|||++|...++++.+..+.
T Consensus       178 ----------------------rl~r~vG~s~Al-----e~~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l  225 (290)
T KOG1680|consen  178 ----------------------RLPRIVGKSRAL-----EMILTGRRLGAQEAKKIGLVNKVVPSGDALGEAVKL  225 (290)
T ss_pred             ----------------------hHHHHhChHHHH-----HHHHhcCcccHHHHHhCCceeEeecchhHHHHHHHH
Confidence                                  233445554433     336778999999999999999999988876554443

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=99.27  E-value=4.4e-11  Score=119.00  Aligned_cols=167  Identities=20%  Similarity=0.214  Sum_probs=120.1

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcC----CCCCCHHH--------------HHH
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIE----PLSCGWGK--------------VEE  199 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~----s~Gg~~~~--------------~~e  199 (690)
                      ++.|++|.++.+-.    .+..+...+.++.++++.+..|+.+++|||+.+    +.|+++..              ...
T Consensus         6 ~~~i~~i~l~~~~~----~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~   81 (195)
T cd06558           6 DGGVATITLNRPEK----RNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRE   81 (195)
T ss_pred             ECCEEEEEECCccc----cCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHH
Confidence            45799999998731    122233567899999999999999999999986    33555432              234


Q ss_pred             HHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccC
Q 005581          200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG  278 (690)
Q Consensus       200 I~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~  278 (690)
                      +.+.+..+...+||||+.++ .+.++|+.++++||.++|.+++.++...+            ++|+-|.         .+
T Consensus        82 ~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~------------~~G~~p~---------~g  140 (195)
T cd06558          82 LQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEV------------KLGLVPG---------GG  140 (195)
T ss_pred             HHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhh------------hcCCCCC---------Cc
Confidence            55566666678999999999 57788999999999999999999999887            5666440         00


Q ss_pred             CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581          279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL  357 (690)
Q Consensus       279 ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~  357 (690)
                      ...                      .+.+.+      ......+ ++.|..++++||++.||||++...+++.+.+.+.+
T Consensus       141 ~~~----------------------~l~~~~------g~~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~a  192 (195)
T cd06558         141 GTQ----------------------RLPRLV------GPARARELLLTGRRISAEEALELGLVDEVVPDEELLAAALELA  192 (195)
T ss_pred             HHH----------------------HHHHHh------CHHHHHHHHHcCCccCHHHHHHcCCCCeecChhHHHHHHHHHH
Confidence            100                      011111      1222223 45689999999999999999999888887776654

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=99.26  E-value=4.6e-11  Score=125.25  Aligned_cols=168  Identities=15%  Similarity=0.164  Sum_probs=116.4

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC-----CCCCHHHH-------------H
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-----LSCGWGKV-------------E  198 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s-----~Gg~~~~~-------------~  198 (690)
                      .++.|++|+++.+=.    .+..+...+.++.+.|+++..|+.|++|||...+     .|+++...             .
T Consensus        14 ~~~~v~~itlnrp~~----~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~   89 (262)
T PRK06144         14 VRGGIARITFNRPAA----RNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYER   89 (262)
T ss_pred             eeCCEEEEEecCCcc----cCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHH
Confidence            356899999987621    1222234578899999999999999999998754     24554321             1


Q ss_pred             HHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhh-cCceeEEEeeccccc
Q 005581          199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEK-VGIEPQVQRIGKYKS  276 (690)
Q Consensus       199 eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeK-lGI~~~~~~~G~yKs  276 (690)
                      .+.+.+..+...+|||||.++ .|..+|..|+++||.++|.+.+.++...+            + +|+-+.         
T Consensus        90 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~------------~~~G~~p~---------  148 (262)
T PRK06144         90 RIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIA------------RTLGNCLS---------  148 (262)
T ss_pred             HHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhH------------HhccCCCC---------
Confidence            133445556678999999999 56788999999999999999999988754            3 566441         


Q ss_pred             cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHH
Q 005581          277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKE  355 (690)
Q Consensus       277 a~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~  355 (690)
                      .+..+                      .+...+      ......+ ++.|..++++||+++||||++...+++.+.+.+
T Consensus       149 ~g~~~----------------------~l~~~v------G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~  200 (262)
T PRK06144        149 MSNLA----------------------RLVALL------GAARVKDMLFTARLLEAEEALAAGLVNEVVEDAALDARADA  200 (262)
T ss_pred             ccHHH----------------------HHHHHh------CHHHHHHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHH
Confidence            11110                      112222      2233333 467899999999999999999988887765544


Q ss_pred             Hh
Q 005581          356 RL  357 (690)
Q Consensus       356 ~~  357 (690)
                      .+
T Consensus       201 ~a  202 (262)
T PRK06144        201 LA  202 (262)
T ss_pred             HH
Confidence            43

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=99.26  E-value=4.6e-11  Score=125.07  Aligned_cols=167  Identities=15%  Similarity=0.081  Sum_probs=119.5

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC-----CCCHHHH------------HHH
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV------------EEI  200 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~-----Gg~~~~~------------~eI  200 (690)
                      ++.|++|.++.+=    ..|..+...+.++.++++++..|+.|++|||.-.+.     |+++...            ..+
T Consensus        11 ~~~v~~itlnrp~----~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~   86 (260)
T PRK07657         11 TPHVVKITLNRPR----AANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLI   86 (260)
T ss_pred             cCCEEEEEEeCCc----ccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHH
Confidence            5789999998862    112223345789999999999999999999988552     4444331            112


Q ss_pred             HHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCC
Q 005581          201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD  279 (690)
Q Consensus       201 ~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~e  279 (690)
                      .+.+..+....|||||.++ .|..+|..|+++||.+++.+.+.++...+            ++|+-|         ..+.
T Consensus        87 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~------------~~G~~p---------~~g~  145 (260)
T PRK07657         87 RTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTET------------TLAIIP---------GAGG  145 (260)
T ss_pred             HHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchh------------ccCcCC---------CccH
Confidence            3445556677999999999 56788999999999999999999999888            777765         1111


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581          280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL  357 (690)
Q Consensus       280 p~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~  357 (690)
                      .+.                      +...+      ......+ ++.|..++++||++.||||++...+++.+.+.+.+
T Consensus       146 ~~~----------------------l~~~v------G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a  196 (260)
T PRK07657        146 TQR----------------------LPRLI------GVGRAKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIA  196 (260)
T ss_pred             HHH----------------------HHHHh------CHHHHHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHH
Confidence            110                      11111      1222223 46789999999999999999998888776665544

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=99.26  E-value=4.2e-11  Score=126.38  Aligned_cols=167  Identities=15%  Similarity=0.103  Sum_probs=119.6

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC----CCCHHHH------------H---
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV------------E---  198 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~----Gg~~~~~------------~---  198 (690)
                      ++.|++|+++.+=    ..|..+...+.++.++++.+..|++|++|||+-++.    |+++...            .   
T Consensus        15 ~~~va~itlnrp~----~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~   90 (275)
T PRK09120         15 EDGIAWVTLNRPE----KRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIR   90 (275)
T ss_pred             ECCEEEEEecCcc----cccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHH
Confidence            5679999998862    112223345788999999999999999999987652    4444321            1   


Q ss_pred             -HHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccc
Q 005581          199 -EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS  276 (690)
Q Consensus       199 -eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKs  276 (690)
                       .+.+.+..+...+|||||.++ .|..+|..|+++||.+++.+.+.++...+            ++|+-|         .
T Consensus        91 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~------------~~Gl~p---------~  149 (275)
T PRK09120         91 REAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEI------------NWGIPP---------G  149 (275)
T ss_pred             HHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCcc------------ccCCCC---------C
Confidence             112334556678999999999 57788999999999999999999999888            788865         1


Q ss_pred             cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHH
Q 005581          277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKE  355 (690)
Q Consensus       277 a~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~  355 (690)
                      .+..+.                      +.      |.+......+ ++.|..++++||+++||||++...+++.+.+.+
T Consensus       150 ~g~~~~----------------------l~------~~iG~~~a~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~  201 (275)
T PRK09120        150 GGVSKA----------------------MA------DTVGHRDALYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTRE  201 (275)
T ss_pred             cchHHH----------------------HH------HHcCHHHHHHHHhcCCccCHHHHHHcCCcceecCHHHHHHHHHH
Confidence            111110                      11      2222333334 467899999999999999999998888776655


Q ss_pred             Hh
Q 005581          356 RL  357 (690)
Q Consensus       356 ~~  357 (690)
                      .+
T Consensus       202 ~a  203 (275)
T PRK09120        202 LA  203 (275)
T ss_pred             HH
Confidence            44

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=99.26  E-value=4.5e-11  Score=124.35  Aligned_cols=167  Identities=15%  Similarity=0.086  Sum_probs=118.4

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHHH-------H--HHHH
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVEE-------I--RRHV  204 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~e-------I--~~aI  204 (690)
                      ++.|++|.++.+=    ..+..+...+.++.+.++++..|+.|++|||+-++    .|+++....+       .  .+.+
T Consensus        12 ~~~v~~i~ln~p~----~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~   87 (249)
T PRK07110         12 EEGIAQVTMQDRV----NKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEANLY   87 (249)
T ss_pred             eCCEEEEEecCCC----ccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhhHHHH
Confidence            5679999998752    11222334578999999999999999999998764    3455443211       1  2345


Q ss_pred             HHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccC
Q 005581          205 VDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTR  283 (690)
Q Consensus       205 ~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~  283 (690)
                      ..+...+|||||.++ .|..+|+.|+++||.+++.+.+.++...+            ++|+-|         ..+..+. 
T Consensus        88 ~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~------------~~Gl~p---------~~g~~~~-  145 (249)
T PRK07110         88 SLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFM------------KYGFTP---------GMGATAI-  145 (249)
T ss_pred             HHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchh------------ccCCCC---------CchHHHH-
Confidence            556678999999999 57788999999999999999999988766            677755         1111110 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581          284 KTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL  357 (690)
Q Consensus       284 ~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~  357 (690)
                                           +.      |.+......+ ++.|..++++||++.||||++...+++.+.+.+.+
T Consensus       146 ---------------------l~------~~~g~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a  193 (249)
T PRK07110        146 ---------------------LP------EKLGLALGQEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELA  193 (249)
T ss_pred             ---------------------HH------HHhCHHHHHHHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHH
Confidence                                 11      1222333334 45789999999999999999998888776665544

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=99.26  E-value=6e-11  Score=124.75  Aligned_cols=167  Identities=15%  Similarity=0.111  Sum_probs=117.1

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHH--------------H
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVE--------------E  199 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~--------------e  199 (690)
                      ++.|++|.++.+=    ..+..+...+.++.+.|+++..|+.|++|||...+    .|+++....              .
T Consensus        19 ~~~v~~itlnrp~----~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~   94 (268)
T PRK07327         19 PPGVLEIVLNGPG----ALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWRE   94 (268)
T ss_pred             CCCEEEEEEcCCC----ccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHH
Confidence            4679999999872    11222334577899999999999999999998754    244443211              1


Q ss_pred             HHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccC
Q 005581          200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG  278 (690)
Q Consensus       200 I~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~  278 (690)
                      +.+.+..+...+|||||.++ .|..+|..|+++||.+++.+++.++...+            ++|+.|         ..+
T Consensus        95 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p---------~~g  153 (268)
T PRK07327         95 ARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHT------------RLGVAA---------GDH  153 (268)
T ss_pred             HHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCccc------------ccCCCC---------Ccc
Confidence            22344555667899999999 56688999999999999999999998877            777765         111


Q ss_pred             CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581          279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL  357 (690)
Q Consensus       279 ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~  357 (690)
                      ..+.                      +...|      ......+ ++.|..++++||++.||||++...+++.+...+.+
T Consensus       154 ~~~~----------------------l~~~v------G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a  205 (268)
T PRK07327        154 AAIV----------------------WPLLC------GMAKAKYYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVA  205 (268)
T ss_pred             hhhH----------------------HHHHh------CHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHH
Confidence            1111                      11111      1222222 45789999999999999999998888776655443

>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=99.26  E-value=1e-11  Score=123.38  Aligned_cols=167  Identities=17%  Similarity=0.173  Sum_probs=116.7

Q ss_pred             CCCCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccC-------------------CCcch
Q 005581          385 GGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDS-------------------PGGDA  445 (690)
Q Consensus       385 ~~~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinS-------------------pGG~~  445 (690)
                      ..++.|.-|.++.|---      +..+..+..++.+.+..+.+||++|+|||.+..                   +-|+.
T Consensus        27 ~~~~~V~hv~lnRPsk~------Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~~~dd  100 (292)
T KOG1681|consen   27 SAQPFVYHVQLNRPSKL------NALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQPEGDD  100 (292)
T ss_pred             CCCCeEEEEEecCcchh------hhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhccccccch
Confidence            34678888888887652      445567889999999999999999999996531                   22222


Q ss_pred             hh--hhHHHHHHHHh--------cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceec----cccccccccchHHHHH
Q 005581          446 LA--SDLMWREIRLL--------SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYE  511 (690)
Q Consensus       446 ~a--s~~i~~~I~~l--------~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~G----SIGv~~~~~~~~~l~~  511 (690)
                      .+  +..+.+.|..+        +.+||||++|+|.|.|||.-|..+||++||+..+++-    -+|+......+.++.+
T Consensus       101 ~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~Rlpk  180 (292)
T KOG1681|consen  101 VARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLNRLPK  180 (292)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHhhhhH
Confidence            21  34445555443        2399999999999999999999999999999999875    2444444444433322


Q ss_pred             HcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHH-HHHhcCCcccHHHHHHcCCc
Q 005581          512 KIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKM-EEYAQGRVWTGNDAASRGLV  590 (690)
Q Consensus       512 klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v-~~l~~Grv~tg~eA~e~GLV  590 (690)
                      -.|=                                                   ..-+ +.-+++|.|+|.||++.|||
T Consensus       181 vVGn---------------------------------------------------~s~~~elafTar~f~a~EAl~~GLv  209 (292)
T KOG1681|consen  181 VVGN---------------------------------------------------QSLARELAFTARKFSADEALDSGLV  209 (292)
T ss_pred             Hhcc---------------------------------------------------hHHHHHHHhhhhhcchhhhhhcCcc
Confidence            2221                                                   0112 33467999999999999999


Q ss_pred             ccccC-hHHHHHHHHHHcC
Q 005581          591 DALGG-FSRAVAIAKQKAN  608 (690)
Q Consensus       591 D~ig~-~~~ai~~a~~~a~  608 (690)
                      .++.+ .++.++.+..+|.
T Consensus       210 Srvf~dk~~ll~~~l~mA~  228 (292)
T KOG1681|consen  210 SRVFPDKEELLNGALPMAE  228 (292)
T ss_pred             hhhcCCHHHHHhhhHHHHH
Confidence            99965 4555555544443

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=99.25  E-value=5.3e-11  Score=124.26  Aligned_cols=165  Identities=16%  Similarity=0.145  Sum_probs=117.2

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC----CCCHHHH------------HHHH
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV------------EEIR  201 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~----Gg~~~~~------------~eI~  201 (690)
                      ++.|++|+++.+=    ..|..+...+.++.++++++.  ++|++|||+.++.    |+++...            ..+.
T Consensus         9 ~~~v~~itlnrp~----~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~   82 (255)
T PRK08150          9 DGGVATIGLNRPA----KRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWH   82 (255)
T ss_pred             eCCEEEEEEcCCc----cccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHH
Confidence            5679999999872    112223345788999998885  7899999987652    4555332            2234


Q ss_pred             HHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCc
Q 005581          202 RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQ  280 (690)
Q Consensus       202 ~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep  280 (690)
                      +.+..+...+|||||.++ .|..+|+.|+++||.+++.+.+.++...+            ++|+-|         ..+.+
T Consensus        83 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~p---------~~g~~  141 (255)
T PRK08150         83 RVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEG------------QRGIFV---------GGGGS  141 (255)
T ss_pred             HHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEecccc------------ccCCCC---------CccHH
Confidence            455667678999999999 46788999999999999999999999888            778765         11111


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581          281 LTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL  357 (690)
Q Consensus       281 ~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~  357 (690)
                      +.                      +...|      ......+ ++.|..++++||+++||||++...+++.+...+.+
T Consensus       142 ~~----------------------l~~~i------G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a  191 (255)
T PRK08150        142 VR----------------------VPRLI------GVARMTDMMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELA  191 (255)
T ss_pred             HH----------------------HHHHh------CHHHHHHHHHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHH
Confidence            10                      11122      2222233 56789999999999999999998888777655543

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=99.25  E-value=6.1e-11  Score=125.27  Aligned_cols=168  Identities=15%  Similarity=0.134  Sum_probs=116.9

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH------------H---
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV------------E---  198 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~------------~---  198 (690)
                      ++.|++|.++.+=    ..+..+...+.++.++++++..|+.|++|||+..+    .|+++...            .   
T Consensus        24 ~~~v~~itlnrp~----~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~   99 (277)
T PRK08258         24 DDGVATITLNRPE----RKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFT   99 (277)
T ss_pred             ECCEEEEEeCCcc----cccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHH
Confidence            5689999999761    11222234578899999999999999999998764    24554332            0   


Q ss_pred             -HHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccc
Q 005581          199 -EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS  276 (690)
Q Consensus       199 -eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKs  276 (690)
                       ...+.+..+...+|||||.++ .|..+|+.|+++||.++|.+.+.++...+            ++|+-+-        .
T Consensus       100 ~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~------------~~Gl~p~--------~  159 (277)
T PRK08258        100 RMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFT------------RVGLAGA--------D  159 (277)
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEecccc------------ccCcCCC--------C
Confidence             112345556678999999999 56788999999999999999999998866            6676420        0


Q ss_pred             cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHH
Q 005581          277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKE  355 (690)
Q Consensus       277 a~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~  355 (690)
                      .+..+                      .+...|      ......+ ++.|..++++||+++||||++...+++.+.+.+
T Consensus       160 ~g~~~----------------------~l~~~v------G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~  211 (277)
T PRK08258        160 MGACA----------------------LLPRII------GQGRASELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQA  211 (277)
T ss_pred             chHHH----------------------HHHHHh------CHHHHHHHHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHH
Confidence            01111                      011111      2222333 467889999999999999999988887766655


Q ss_pred             Hh
Q 005581          356 RL  357 (690)
Q Consensus       356 ~~  357 (690)
                      .+
T Consensus       212 ~a  213 (277)
T PRK08258        212 LA  213 (277)
T ss_pred             HH
Confidence            44

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=99.25  E-value=7.3e-11  Score=124.61  Aligned_cols=168  Identities=13%  Similarity=0.137  Sum_probs=117.8

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH----------------
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV----------------  197 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~----------------  197 (690)
                      ++.|++|+++.+    ...|..+...+.++.++++++..||.|++|||..++    .|+++...                
T Consensus        17 ~~~v~~itlnrp----~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~   92 (276)
T PRK05864         17 RPEIALITLNRP----ERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTYAL   92 (276)
T ss_pred             cCCEEEEEecCC----ccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccchhHHH
Confidence            567999999876    111222334567899999999999999999998764    24544321                


Q ss_pred             ---HHHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeecc
Q 005581          198 ---EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGK  273 (690)
Q Consensus       198 ---~eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~  273 (690)
                         ..+.+.+..+...+|||||.++ .|..+|+.|+++||.+++.+.+.++...+            ++|+.+-      
T Consensus        93 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~------------~~Gl~p~------  154 (276)
T PRK05864         93 RSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGI------------NNGLTAS------  154 (276)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCccc------------ccCCCCC------
Confidence               1123345556678999999999 57789999999999999999999998877            6676530      


Q ss_pred             ccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHH
Q 005581          274 YKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISM  352 (690)
Q Consensus       274 yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~  352 (690)
                        ..+..+.                      +.      |.+......+ ++.|+.++++||++.||||++...+++.+.
T Consensus       155 --~~g~~~~----------------------l~------~~vG~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~  204 (276)
T PRK05864        155 --ELGLSYL----------------------LP------RAIGSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDT  204 (276)
T ss_pred             --Ccchhee----------------------hH------hhhCHHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHH
Confidence              0111111                      11      1222333333 467899999999999999999988887765


Q ss_pred             HHHHh
Q 005581          353 LKERL  357 (690)
Q Consensus       353 l~~~~  357 (690)
                      +.+.+
T Consensus       205 a~~~a  209 (276)
T PRK05864        205 CYAIA  209 (276)
T ss_pred             HHHHH
Confidence            55443

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=99.24  E-value=8e-11  Score=124.16  Aligned_cols=168  Identities=13%  Similarity=0.058  Sum_probs=116.8

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC-----CCCCHHHH-----------H--
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-----LSCGWGKV-----------E--  198 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s-----~Gg~~~~~-----------~--  198 (690)
                      .++.|++|+++.+=    ..|..+...+.++.++++.+..|+.|++|||...+     .|+++...           .  
T Consensus        19 ~~~~v~~itlnrp~----~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~   94 (273)
T PRK07396         19 SADGIAKITINRPE----VRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRL   94 (273)
T ss_pred             ecCCEEEEEEcCCc----ccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhh
Confidence            35689999998762    12222334578899999999999999999998754     24544321           1  


Q ss_pred             HHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeecccccc
Q 005581          199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA  277 (690)
Q Consensus       199 eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa  277 (690)
                      ...+.+..+...+|||||.++ .|..+|+-|+++||.+++.+.+.++...+            ++|+-|         ..
T Consensus        95 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p---------~~  153 (273)
T PRK07396         95 NVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGP------------KVGSFD---------GG  153 (273)
T ss_pred             HHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccc------------cccccC---------Cc
Confidence            112234456677999999999 46788999999999999999999998877            666544         10


Q ss_pred             CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581          278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKER  356 (690)
Q Consensus       278 ~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~  356 (690)
                      +..+                      .+...|.      .....+ ++.|..++++||+++||||++...+++.+.+.+.
T Consensus       154 ~~~~----------------------~l~~~vG------~~~a~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~  205 (273)
T PRK07396        154 YGAS----------------------YLARIVG------QKKAREIWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRW  205 (273)
T ss_pred             hHHH----------------------HHHHHhh------HHHHHHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHH
Confidence            0000                      0222222      222233 4678999999999999999999888877665554


Q ss_pred             h
Q 005581          357 L  357 (690)
Q Consensus       357 ~  357 (690)
                      +
T Consensus       206 a  206 (273)
T PRK07396        206 C  206 (273)
T ss_pred             H
Confidence            3

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=99.24  E-value=8.7e-11  Score=122.61  Aligned_cols=167  Identities=16%  Similarity=0.124  Sum_probs=118.3

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHH---------------
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVE---------------  198 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~---------------  198 (690)
                      ++.|++|.++.+=    ..+..+...+.++.++|+++..|+.+++|||.-.+    .|+++....               
T Consensus         9 ~~~v~~itlnrp~----~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~   84 (255)
T PRK07260          9 EDDLATLTLNRPE----VSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLVKIA   84 (255)
T ss_pred             ECCEEEEEeCCcc----cccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhHHHHH
Confidence            5679999999762    11222334577999999999999999999998764    245543221               


Q ss_pred             -HHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccc
Q 005581          199 -EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS  276 (690)
Q Consensus       199 -eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKs  276 (690)
                       .+.+.+..++..+|||||.++ .|..+|..|+++||.+++.+.+.++...+            ++|+-|         .
T Consensus        85 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~------------~~Gl~p---------~  143 (255)
T PRK07260         85 ELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFV------------GVGLAP---------D  143 (255)
T ss_pred             HHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHh------------hcCCCC---------C
Confidence             123344456678999999999 46688999999999999999999998877            788866         2


Q ss_pred             cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHH
Q 005581          277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKE  355 (690)
Q Consensus       277 a~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~  355 (690)
                      .+..+.                      +...      +......+ ++.|..++++||++.||||++...+++.+.+.+
T Consensus       144 ~g~~~~----------------------l~~~------vg~~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~  195 (255)
T PRK07260        144 AGGLFL----------------------LTRA------IGLNRATHLAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQ  195 (255)
T ss_pred             Cchhhh----------------------hHHh------hCHHHHHHHHHhCCccCHHHHHHcCCcceecCHhHHHHHHHH
Confidence            222211                      1111      22222333 456899999999999999999988877766554


Q ss_pred             Hh
Q 005581          356 RL  357 (690)
Q Consensus       356 ~~  357 (690)
                      .+
T Consensus       196 ~a  197 (255)
T PRK07260        196 LL  197 (255)
T ss_pred             HH
Confidence            43

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=99.24  E-value=7.7e-11  Score=123.46  Aligned_cols=166  Identities=17%  Similarity=0.103  Sum_probs=116.1

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH------------HH--
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV------------EE--  199 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~------------~e--  199 (690)
                      ++.|++|+++.+=    ..|..+...+.++.+.++++. |+.+++|||+..+    .|+++...            ..  
T Consensus        11 ~~~v~~itlnrp~----~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~   85 (262)
T PRK08140         11 EAGVATLTLNRPD----KLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIE   85 (262)
T ss_pred             ECCEEEEEecCCc----ccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhHHHHH
Confidence            5679999998751    122233345789999999999 9999999998764    24444321            11  


Q ss_pred             --HHHHHHHHhhcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccc
Q 005581          200 --IRRHVVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS  276 (690)
Q Consensus       200 --I~~aI~~~r~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKs  276 (690)
                        +...+..+...+|||||.+++ |..+|+.|+++||.+++.+++.++...+            ++|+-|         .
T Consensus        86 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~G~~p---------~  144 (262)
T PRK08140         86 TFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFV------------KIGLVP---------D  144 (262)
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEecccc------------ccCCCC---------C
Confidence              122445566789999999995 6688999999999999999999988766            677755         1


Q ss_pred             cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHH
Q 005581          277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKE  355 (690)
Q Consensus       277 a~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~  355 (690)
                      .+..+.                      +...|      ......+ ++.|..++++||+++||||++...+++.+.+.+
T Consensus       145 ~g~~~~----------------------l~~~v------G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~  196 (262)
T PRK08140        145 SGGTWF----------------------LPRLV------GMARALGLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQ  196 (262)
T ss_pred             ccHHHH----------------------HHHHh------CHHHHHHHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHH
Confidence            111110                      11122      2222233 467899999999999999999988887766555


Q ss_pred             Hh
Q 005581          356 RL  357 (690)
Q Consensus       356 ~~  357 (690)
                      .+
T Consensus       197 ~a  198 (262)
T PRK08140        197 LA  198 (262)
T ss_pred             HH
Confidence            44

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=99.23  E-value=6.2e-11  Score=123.31  Aligned_cols=165  Identities=15%  Similarity=0.121  Sum_probs=116.6

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH------------HHH
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV------------EEI  200 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~------------~eI  200 (690)
                      .++.|++|.++.+=    ..+..+...+.++.++++++..||.|++|||+..+    .|+++...            ..+
T Consensus         9 ~~~~v~~itlnrp~----~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   84 (249)
T PRK05870          9 VDDGVALITVNDPD----RRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRRI   84 (249)
T ss_pred             ccCCEEEEEEcCCC----ccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccchHHHHHHH
Confidence            35679999998751    11222334578999999999999999999998754    24554332            123


Q ss_pred             HHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCC
Q 005581          201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD  279 (690)
Q Consensus       201 ~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~e  279 (690)
                      .+.+..+...+|||||.++ .|..+|..|+++||.+++.+.+.++...+            ++|+-|         ..+.
T Consensus        85 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~------------~~G~~p---------~~g~  143 (249)
T PRK05870         85 YDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQ------------KLGLHP---------GGGA  143 (249)
T ss_pred             HHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCccc------------ccCcCC---------CCcc
Confidence            3345556678999999999 56788999999999999999999988877            777766         2222


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581          280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKER  356 (690)
Q Consensus       280 p~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~  356 (690)
                      +++                      +      .|-+......+ ++.|+.++++||++.||||++.  +++.+...+.
T Consensus       144 ~~~----------------------l------~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~  191 (249)
T PRK05870        144 TWM----------------------L------QRAVGPQVARAALLFGMRFDAEAAVRHGLALMVA--DDPVAAALEL  191 (249)
T ss_pred             eee----------------------H------HhhhCHHHHHHHHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHH
Confidence            221                      1      12223333333 4578999999999999999998  5665554443

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=99.23  E-value=7.2e-11  Score=123.54  Aligned_cols=167  Identities=19%  Similarity=0.119  Sum_probs=117.1

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC-----CCCHHHHH----------HHH
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKVE----------EIR  201 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~-----Gg~~~~~~----------eI~  201 (690)
                      .++.|++|.++.+=.    .|..+...+.++.++++++..|+.|++|||+..++     |+++....          .+.
T Consensus        10 ~~~~v~~itlnrp~~----~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~   85 (259)
T PRK06494         10 RKGHVTIVTLNRPEV----MNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFG   85 (259)
T ss_pred             eECCEEEEEEcCccc----cCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHHH
Confidence            356899999987622    12222345688999999999999999999988652     55554321          111


Q ss_pred             HHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCc
Q 005581          202 RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQ  280 (690)
Q Consensus       202 ~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep  280 (690)
                      . +..+....|||||.++ .|..+|+.|+++||.+++.+.+.++...+            ++|+-|         ..+..
T Consensus        86 ~-~~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p---------~~g~~  143 (259)
T PRK06494         86 G-LTSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEP------------RVGLAA---------LAGGL  143 (259)
T ss_pred             H-HHHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCccc------------ccCCCC---------CchHH
Confidence            1 2223356899999999 46788999999999999999999999877            777765         11111


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581          281 LTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL  357 (690)
Q Consensus       281 ~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~  357 (690)
                      +.                      +.      |.+......+ ++.|..++++||+++||||++...+++.+.+.+.+
T Consensus       144 ~~----------------------l~------~~vg~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a  193 (259)
T PRK06494        144 HR----------------------LP------RQIGLKRAMGMILTGRRVTAREGLELGFVNEVVPAGELLAAAERWA  193 (259)
T ss_pred             HH----------------------HH------HHcCHHHHHHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHH
Confidence            10                      11      2223333333 56789999999999999999998888776655443

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=99.23  E-value=1.1e-10  Score=122.67  Aligned_cols=168  Identities=14%  Similarity=0.062  Sum_probs=117.2

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCC-ceEEEEEcCC----CCCCHHHH--------------
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPR-IVGIYLHIEP----LSCGWGKV--------------  197 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~-IkgVvL~i~s----~Gg~~~~~--------------  197 (690)
                      .++.|++|+++.+=    ..+..+...+.+|.+.++.+..|+. |++|||+..+    .|+++...              
T Consensus        10 ~~~~i~~itlnrp~----~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   85 (266)
T PRK05981         10 FDGGVAILTLDHPE----VMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAG   85 (266)
T ss_pred             eECCEEEEEecCcc----cccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccchhH
Confidence            35679999998762    1122233457899999999988765 9999998764    24444321              


Q ss_pred             HH----HHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeec
Q 005581          198 EE----IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIG  272 (690)
Q Consensus       198 ~e----I~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G  272 (690)
                      +.    +.+.+..+...+|||||.++ .|..+|..|+++||.++|.+++.++...+            ++|+-|      
T Consensus        86 ~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~------------~lG~~p------  147 (266)
T PRK05981         86 AALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFR------------RIGLVP------  147 (266)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHh------------hcCCCC------
Confidence            11    23445566678999999999 46688999999999999999999987766            777765      


Q ss_pred             cccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHH
Q 005581          273 KYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVIS  351 (690)
Q Consensus       273 ~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~  351 (690)
                         ..+..+.                      +...|      ......+ ++.|..++++||++.||||++...+++.+
T Consensus       148 ---~~g~~~~----------------------l~~~v------g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~  196 (266)
T PRK05981        148 ---DGGSTWL----------------------LPRLV------GKARAMELSLLGEKLPAETALQWGLVNRVVDDAELMA  196 (266)
T ss_pred             ---CccHHHH----------------------HHHHh------HHHHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHH
Confidence               1111111                      11112      2222233 46789999999999999999998888776


Q ss_pred             HHHHHh
Q 005581          352 MLKERL  357 (690)
Q Consensus       352 ~l~~~~  357 (690)
                      .+.+.+
T Consensus       197 ~a~~~a  202 (266)
T PRK05981        197 EAMKLA  202 (266)
T ss_pred             HHHHHH
Confidence            665544

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=99.22  E-value=9.1e-11  Score=122.88  Aligned_cols=167  Identities=17%  Similarity=0.171  Sum_probs=119.2

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC-----CCCCHHHHH-------H----H
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-----LSCGWGKVE-------E----I  200 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s-----~Gg~~~~~~-------e----I  200 (690)
                      .++.|++|+++.+ ..    |..+...+.++.++++++..|++|++|||+-..     .|+++....       .    .
T Consensus         9 ~~~~v~~itlnrp-~~----Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~   83 (261)
T PRK03580          9 RNGSILEITLDRP-KA----NAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGG   83 (261)
T ss_pred             EECCEEEEEECCc-cc----cCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhh
Confidence            3568999999988 21    222334578899999999999999999998754     245554211       1    1


Q ss_pred             HHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCC
Q 005581          201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD  279 (690)
Q Consensus       201 ~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~e  279 (690)
                      ...+.++....|||||.++ .|..+|.-|+++||.+++.+.+.++...+            ++|+-|         ..+.
T Consensus        84 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~G~~p---------~~g~  142 (261)
T PRK03580         84 FAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEA------------KLGIVP---------DSGG  142 (261)
T ss_pred             hHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCccc------------ccCcCC---------CccH
Confidence            2234556678999999999 56788999999999999999999999877            777755         1111


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581          280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL  357 (690)
Q Consensus       280 p~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~  357 (690)
                      .+                      .+...+      ......+ ++.|..++++||+++||||++...+++.+.+.+.+
T Consensus       143 ~~----------------------~l~~~v------g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a  193 (261)
T PRK03580        143 VL----------------------RLPKRL------PPAIANEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELA  193 (261)
T ss_pred             HH----------------------HHHHHh------CHHHHHHHHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHH
Confidence            11                      011222      2223333 45689999999999999999998888776665544

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=99.22  E-value=9.2e-11  Score=122.59  Aligned_cols=164  Identities=16%  Similarity=0.124  Sum_probs=118.5

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHH--------------
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVE--------------  198 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~--------------  198 (690)
                      .++.|++|+++.+  +.   |..+...+.++.++++++..|+.|++|||+-++    .|+++....              
T Consensus        10 ~~~~v~~itlnrp--~~---Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~   84 (257)
T PRK06495         10 VSDHVAVVTLDNP--PV---NALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNR   84 (257)
T ss_pred             eeCCEEEEEECCC--cc---ccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHH
Confidence            3568999999997  21   223345678999999999999999999998764    345554321              


Q ss_pred             HHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeecccccc
Q 005581          199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA  277 (690)
Q Consensus       199 eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa  277 (690)
                      .+.+.+..+....|||||.++ .|..+|+.|+++||.+++.+.+.++...+            ++|+.      |     
T Consensus        85 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~------~-----  141 (257)
T PRK06495         85 RTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEI------------DVGLA------G-----  141 (257)
T ss_pred             HHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhh------------ccCcc------c-----
Confidence            123345556677899999999 56788999999999999999999999877            67762      1     


Q ss_pred             CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581          278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKER  356 (690)
Q Consensus       278 ~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~  356 (690)
                       ..+.                      +...      +......+ ++.|..++++||++.||||++...+++.+...+.
T Consensus       142 -~~~~----------------------l~~~------~g~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~  192 (257)
T PRK06495        142 -GGKH----------------------AMRL------FGHSLTRRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEI  192 (257)
T ss_pred             -cHHH----------------------HHHH------hCHHHHHHHHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHH
Confidence             1110                      1111      22233333 4578999999999999999999888877665554


Q ss_pred             h
Q 005581          357 L  357 (690)
Q Consensus       357 ~  357 (690)
                      +
T Consensus       193 a  193 (257)
T PRK06495        193 A  193 (257)
T ss_pred             H
Confidence            3

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=99.21  E-value=7.5e-11  Score=123.65  Aligned_cols=166  Identities=15%  Similarity=0.099  Sum_probs=116.6

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHH------H-------H
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVE------E-------I  200 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~------e-------I  200 (690)
                      ++.|++|+++.+=    ..+..+...+.++.++++++..|+.|++|||+..+    .|+++....      .       .
T Consensus        12 ~~~v~~itlnrp~----~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~   87 (263)
T PRK07799         12 RGHTLIVTMNRPE----ARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDP   87 (263)
T ss_pred             ECCEEEEEECCCc----ccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhhhhhh
Confidence            5679999998762    12223345678999999999999999999998764    255554321      0       0


Q ss_pred             H--HHHHHHhhcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeecccccc
Q 005581          201 R--RHVVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA  277 (690)
Q Consensus       201 ~--~aI~~~r~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa  277 (690)
                      .  ..+.+++...|||||.+++ |..+|.-|+++||.+++.+.+.++...+            ++|+-|         ..
T Consensus        88 ~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p---------~~  146 (263)
T PRK07799         88 SRIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEA------------KWSLFP---------MG  146 (263)
T ss_pred             hHHHHHHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCccc------------ccCcCC---------Cc
Confidence            0  1233345678999999995 6688999999999999999999999877            777765         11


Q ss_pred             CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581          278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKER  356 (690)
Q Consensus       278 ~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~  356 (690)
                      +..+                      .+...      +......+ ++.|..++++||+++||||++...+++.+...+.
T Consensus       147 g~~~----------------------~l~r~------vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~  198 (263)
T PRK07799        147 GSAV----------------------RLVRQ------IPYTVACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALEL  198 (263)
T ss_pred             cHHH----------------------HHHHH------hCHHHHHHHHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHH
Confidence            1111                      01122      22233333 5678999999999999999999888776655443

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=99.21  E-value=9.2e-11  Score=121.65  Aligned_cols=167  Identities=16%  Similarity=0.116  Sum_probs=115.6

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC----CCCHHH-------HHHHHHHHHH
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGK-------VEEIRRHVVD  206 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~----Gg~~~~-------~~eI~~aI~~  206 (690)
                      ++.|++|+++.+=.    .+..+...+.++.++++++.+| .+++|||+..+.    |+++..       ...+.+.+..
T Consensus         7 ~~~v~~itlnrp~~----~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~   81 (243)
T PRK07854          7 DGQVLTIELQRPER----RNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHA   81 (243)
T ss_pred             eCCEEEEEeCCCcc----ccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHH
Confidence            56799999998722    1222334567899999998754 899999986542    444431       1223445556


Q ss_pred             HhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCC
Q 005581          207 FKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKT  285 (690)
Q Consensus       207 ~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~  285 (690)
                      +...+|||||.++ .|..+|..|+++||.++|.+++.++...+            ++|+.|         ..+..+    
T Consensus        82 l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~------------~~G~~p---------~~g~~~----  136 (243)
T PRK07854         82 IDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVA------------KYGIAL---------DNWTIR----  136 (243)
T ss_pred             HHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEecccc------------ccccCC---------CccHHH----
Confidence            6677999999999 56788999999999999999999999877            777765         111111    


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHhC
Q 005581          286 MSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERLG  358 (690)
Q Consensus       286 ~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~g  358 (690)
                                        .+...+      ......+ ++.|..++++||++.||||++...+++.+.+++...
T Consensus       137 ------------------~l~~~~------G~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~~~a~~~a~~l~~  186 (243)
T PRK07854        137 ------------------RLSSLV------GGGRARAMLLGAEKLTAEQALATGMANRIGTLADAQAWAAEIAG  186 (243)
T ss_pred             ------------------HHHHHh------CHHHHHHHHHcCCCcCHHHHHHCCCcccccCHHHHHHHHHHHHh
Confidence                              011112      2222333 467899999999999999999776666666555443

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=99.20  E-value=1.1e-10  Score=121.90  Aligned_cols=167  Identities=18%  Similarity=0.183  Sum_probs=116.6

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHHH-----H-HHHHHH
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVEE-----I-RRHVVD  206 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~e-----I-~~aI~~  206 (690)
                      .++.|++|+++.+=.    .|..+...+.++.+.++++..|+.|++|||.-.+    .|+++.....     . ...+..
T Consensus         9 ~~~~v~~itlnrp~~----~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   84 (254)
T PRK08252          9 RRGRVLIITINRPEA----RNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGG   84 (254)
T ss_pred             EECCEEEEEECCCcc----cCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHHH
Confidence            356899999987621    1222334578899999999999999999998754    3555543211     1 111212


Q ss_pred             H--hhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccC
Q 005581          207 F--KKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTR  283 (690)
Q Consensus       207 ~--r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~  283 (690)
                      +  +...|||||.++ .|..+|..|+++||.+++.+.+.++...+            ++|+.|         ..+..+. 
T Consensus        85 ~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~p---------~~g~~~~-  142 (254)
T PRK08252         85 LTERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEV------------KRGLVA---------AGGGLLR-  142 (254)
T ss_pred             HHHhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchh------------hcCCCC---------CchHHHH-
Confidence            2  246899999999 56788999999999999999999999887            788866         1111110 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581          284 KTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKER  356 (690)
Q Consensus       284 ~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~  356 (690)
                                           +.      |.+......+ ++.|..++++||+++||||++...+++++.+.+.
T Consensus       143 ---------------------l~------~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~  189 (254)
T PRK08252        143 ---------------------LP------RRIPYHIAMELALTGDMLTAERAHELGLVNRLTEPGQALDAALEL  189 (254)
T ss_pred             ---------------------HH------HHcCHHHHHHHHHcCCccCHHHHHHcCCcceecCcchHHHHHHHH
Confidence                                 11      2223333344 4568899999999999999999888877665543

>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily

Probab=99.20  E-value=5.8e-10  Score=114.87  Aligned_cols=167  Identities=20%  Similarity=0.205  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECccccHHHHHHHHhcCeEEEecCce
Q 005581          414 IGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTL  493 (690)
Q Consensus       414 ~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~  493 (690)
                      .++.+.++|+.+.++   ++|.|-+++|||.+.++..|.+.|+..  +.||+++|...|.|||.+||++||.|+|.|++.
T Consensus        76 dse~v~raI~~~~~~---~~IdLii~TpGG~v~AA~~I~~~l~~~--~~~v~v~VP~~A~SAGTlIALaADeIvM~p~a~  150 (285)
T PF01972_consen   76 DSEFVLRAIREAPKD---KPIDLIIHTPGGLVDAAEQIARALREH--PAKVTVIVPHYAMSAGTLIALAADEIVMGPGAV  150 (285)
T ss_pred             hHHHHHHHHHhcCCC---CceEEEEECCCCcHHHHHHHHHHHHhC--CCCEEEEECcccccHHHHHHHhCCeEEECCCCc
Confidence            356677777666544   568888999999999999999999976  889999999999999999999999999999999


Q ss_pred             eccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhH--HHH-HHHHHHHHHHHHHHHHHhhcCCCHHHH
Q 005581          494 TGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDE--AEL-FAKSAQNAYKLFRDKAAFSRSMTVDKM  570 (690)
Q Consensus       494 ~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~--~~~-~~~~i~~~y~~F~~~Va~~R~~~~~~v  570 (690)
                      .|.+-...+.......++.+--               .+....+++.  ... -++.++++. .|+...-. .+++.++.
T Consensus       151 LGpiDPqi~~~pA~sil~~~~~---------------K~~~~i~D~tlIladia~KAi~q~~-~~v~~lL~-~~~~~eka  213 (285)
T PF01972_consen  151 LGPIDPQIGQYPAASILKAVEQ---------------KPPDEIDDQTLILADIAEKAIRQVR-EFVKELLK-DKMDEEKA  213 (285)
T ss_pred             cCCCCccccCCChHHHHHHHHh---------------ccccccCHHHHHHHHHHHHHHHHHH-HHHHHHHH-cCCCHHHH
Confidence            9975432222222222111100               0001111111  001 112223332 34433333 35777766


Q ss_pred             HHHh----cC-----CcccHHHHHHcCCcccccChHHHHHH
Q 005581          571 EEYA----QG-----RVWTGNDAASRGLVDALGGFSRAVAI  602 (690)
Q Consensus       571 ~~l~----~G-----rv~tg~eA~e~GLVD~ig~~~~ai~~  602 (690)
                      ++++    +|     ..++.+||+++||==...-.++..+.
T Consensus       214 ~~ia~~L~~g~~tHdypi~~eea~~lGL~V~t~~p~ei~~l  254 (285)
T PF01972_consen  214 EEIAEKLSSGKWTHDYPITVEEAKELGLPVSTDMPEEIYEL  254 (285)
T ss_pred             HHHHHHhcCCCCCCCCCCCHHHHHHcCCCcCCCCcHHHHHH
Confidence            6543    34     45889999999997666555554443

The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=99.20  E-value=4e-10  Score=117.34  Aligned_cols=164  Identities=12%  Similarity=0.074  Sum_probs=118.8

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHH------H-------
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVE------E-------  199 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~------e-------  199 (690)
                      .++.|++|+++.+  +.   |..+.-.+.++.+.++++..|+.|++|||.-.+    .|+++....      .       
T Consensus         8 ~~~~v~~itlnrp--~~---Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~   82 (249)
T PRK07938          8 PEPGIAEVTVDYP--PV---NALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRG   82 (249)
T ss_pred             cCCCEEEEEECCC--Cc---ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHH
Confidence            4678999999987  21   223345578999999999999999999998764    356654321      1       


Q ss_pred             HHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccC
Q 005581          200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG  278 (690)
Q Consensus       200 I~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~  278 (690)
                      ..+.+..+...+|||||.++ .|..+|..|+++||.+++.+++.++...+            ++|+-.            
T Consensus        83 ~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~------------~~G~~g------------  138 (249)
T PRK07938         83 CFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEV------------DRGALG------------  138 (249)
T ss_pred             HHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccc------------eecCch------------
Confidence            12344556678999999999 46788999999999999999999998877            566511            


Q ss_pred             CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581          279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL  357 (690)
Q Consensus       279 ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~  357 (690)
                      ...                      .+.      |-+......+ ++.|..++++||+++||||++...+++.+.+.+.+
T Consensus       139 ~~~----------------------~l~------~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a  190 (249)
T PRK07938        139 AAT----------------------HLQ------RLVPQHLMRALFFTAATITAAELHHFGSVEEVVPRDQLDEAALEVA  190 (249)
T ss_pred             hHH----------------------HHH------HhcCHHHHHHHHHhCCcCCHHHHHHCCCccEEeCHHHHHHHHHHHH
Confidence            000                      011      1122233333 46789999999999999999999888877665544

>PLN02921 naphthoate synthase

Probab=99.19  E-value=1.6e-10  Score=124.68  Aligned_cols=167  Identities=13%  Similarity=0.077  Sum_probs=117.7

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC-----CCCCHHHHH-----------H--
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-----LSCGWGKVE-----------E--  199 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s-----~Gg~~~~~~-----------e--  199 (690)
                      ++.|++|+|+.+=    ..+..+...+.+|.++++.+..|+.|++|||.-.+     .|+++....           .  
T Consensus        74 ~~~Va~ItLnrP~----~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~  149 (327)
T PLN02921         74 GEGIAKITINRPE----RRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLN  149 (327)
T ss_pred             CCCEEEEEECCCC----CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHH
Confidence            5789999998761    12223345678999999999999999999998754     255553211           1  


Q ss_pred             HHHHHHHHhhcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccC
Q 005581          200 IRRHVVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG  278 (690)
Q Consensus       200 I~~aI~~~r~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~  278 (690)
                      ..+.+..++..+|||||.+++ |..+|..|+++||.++|.+.+.|+..++            ++|+-+.         .+
T Consensus       150 ~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~------------~~Gl~p~---------~g  208 (327)
T PLN02921        150 VLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGP------------KVGSFDA---------GY  208 (327)
T ss_pred             HHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCccc------------ccCCCCC---------cc
Confidence            122344566779999999995 6688999999999999999999999877            5665431         00


Q ss_pred             CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581          279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL  357 (690)
Q Consensus       279 ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~  357 (690)
                      .++                      .+.      |-+......+ ++.|+.++++||+++||||++...+++.+.+.+.+
T Consensus       209 g~~----------------------~L~------rliG~~~A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~a  260 (327)
T PLN02921        209 GSS----------------------IMA------RLVGQKKAREMWFLARFYTASEALKMGLVNTVVPLDELEGETVKWC  260 (327)
T ss_pred             HHH----------------------HHH------HHhCHHHHHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHHH
Confidence            000                      011      1122333334 46789999999999999999999888876655443

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=99.19  E-value=1.3e-10  Score=121.69  Aligned_cols=166  Identities=14%  Similarity=0.149  Sum_probs=116.3

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC----CCCHHHH---------H----H
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------E----E  199 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~----Gg~~~~~---------~----e  199 (690)
                      .++.|++|+++.+=    ..+..+...+.++.+.++++ .|+.+++|||...+.    |+++...         .    .
T Consensus        12 ~~~~v~~itlnrp~----~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   86 (260)
T PRK07659         12 YEGRVATIMLNRPE----ALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNT   86 (260)
T ss_pred             eeCCEEEEEeCCcc----cccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHHH
Confidence            35679999988762    11222334578999999999 689999999987652    4554332         1    1


Q ss_pred             HHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccC
Q 005581          200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG  278 (690)
Q Consensus       200 I~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~  278 (690)
                      +.+.+..+...+|||||.++ .|..+|+-|+++||.+++.+++.++...+            ++|+-|         ..+
T Consensus        87 ~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p---------~~g  145 (260)
T PRK07659         87 ISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFI------------GIGLIP---------DGG  145 (260)
T ss_pred             HHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchh------------hcCCCC---------CCc
Confidence            23344456667999999999 57788999999999999999999998876            777765         222


Q ss_pred             CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581          279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL  357 (690)
Q Consensus       279 ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~  357 (690)
                      ..+.                      +      .|.+......+ ++.|..++++||+++||||++. .+++.+.+.+.+
T Consensus       146 ~~~~----------------------L------~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a  196 (260)
T PRK07659        146 GHFF----------------------L------QKRVGENKAKQIIWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKI  196 (260)
T ss_pred             hhhh----------------------H------HHhcCHHHHHHHHHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHH
Confidence            2221                      1      12233344444 4568999999999999999998 677665554433

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=99.19  E-value=1.7e-10  Score=122.66  Aligned_cols=166  Identities=19%  Similarity=0.203  Sum_probs=115.4

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC----CCCHHHH---------------
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------------  197 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~----Gg~~~~~---------------  197 (690)
                      .++.|++|+++.+=.    .+..+...+.++.+.++++..|++|++|||+..+.    |+++...               
T Consensus        10 ~~~~Va~ItlnrP~~----~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~   85 (288)
T PRK08290         10 VAGRIARITLNRPEA----RNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQHPT   85 (288)
T ss_pred             eeCCEEEEEecCccc----cCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccccccccc
Confidence            356799999987621    12223345788999999999999999999987642    4443211               


Q ss_pred             -------------------HHHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhh
Q 005581          198 -------------------EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGG  257 (690)
Q Consensus       198 -------------------~eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~  257 (690)
                                         ..+.+.+..++..+|||||.++ .|..+|..|+++||.+++.+.+.++...+         
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~---------  156 (288)
T PRK08290         86 LWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVV---------  156 (288)
T ss_pred             cccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCccc---------
Confidence                               1122333456678999999999 57788999999999999999999998877         


Q ss_pred             hhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHh
Q 005581          258 VLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKE  336 (690)
Q Consensus       258 lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~  336 (690)
                         ++|+ +     |    . ..+.                      +...|      ......+ ++.|+.++++||++
T Consensus       157 ---~lGl-~-----~----~-~~~~----------------------l~~~i------G~~~A~~llltG~~i~A~eA~~  194 (288)
T PRK08290        157 ---RMGI-P-----G----V-EYFA----------------------HPWEL------GPRKAKELLFTGDRLTADEAHR  194 (288)
T ss_pred             ---ccCc-C-----c----c-hHHH----------------------HHHHh------hHHHHHHHHHcCCCCCHHHHHH
Confidence               6665 1     0    0 0010                      00111      2222223 46789999999999


Q ss_pred             cCCeeEecchhHHHHHHHHHh
Q 005581          337 EGFITNVLYDDEVISMLKERL  357 (690)
Q Consensus       337 ~GLID~i~~~de~~~~l~~~~  357 (690)
                      +||||++...+++.+.+.+.+
T Consensus       195 ~GLV~~vv~~~~l~~~a~~~a  215 (288)
T PRK08290        195 LGMVNRVVPRDELEAETLELA  215 (288)
T ss_pred             CCCccEeeCHHHHHHHHHHHH
Confidence            999999998888776655543

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=99.18  E-value=1.6e-10  Score=122.14  Aligned_cols=165  Identities=12%  Similarity=0.170  Sum_probs=117.6

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC------CCCCHHHH----------HHH-
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP------LSCGWGKV----------EEI-  200 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s------~Gg~~~~~----------~eI-  200 (690)
                      ++.|++|+++.+  +.   |..+.-.+.++.++|+++.+|+.|++|||+.+.      .|+++...          .++ 
T Consensus        19 ~~~Va~itlnr~--~~---Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~   93 (278)
T PLN03214         19 PGGIAVVWLAKE--PV---NSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFW   93 (278)
T ss_pred             CCCEEEEEECCC--CC---CCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHH
Confidence            477999999875  21   222334578999999999999999999998753      24444321          112 


Q ss_pred             ---HHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCce-eEEEeecccc
Q 005581          201 ---RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIE-PQVQRIGKYK  275 (690)
Q Consensus       201 ---~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~-~~~~~~G~yK  275 (690)
                         .+.+.++...+|||||.++ .|..+|+.|+++||.+++.+.+.|+...+            ++|+. +         
T Consensus        94 ~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~lGl~~p---------  152 (278)
T PLN03214         94 LTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEV------------ALGIPVP---------  152 (278)
T ss_pred             HHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHH------------HhCCCCC---------
Confidence               1234567778999999999 56788999999999999999999998877            67773 3         


Q ss_pred             ccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHH
Q 005581          276 SAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLK  354 (690)
Q Consensus       276 sa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~  354 (690)
                      ..+..+                      .+      .|.+......+ ++.|+.++++||+++||||++...+++.+.+.
T Consensus       153 ~~~~~~----------------------~l------~~~~G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~  204 (278)
T PLN03214        153 KFWARL----------------------FM------GRVIDRKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAA  204 (278)
T ss_pred             ChhHHH----------------------HH------HHhcCHHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHH
Confidence            111111                      01      12233444444 46789999999999999999998888776554


Q ss_pred             HH
Q 005581          355 ER  356 (690)
Q Consensus       355 ~~  356 (690)
                      +.
T Consensus       205 ~~  206 (278)
T PLN03214        205 SA  206 (278)
T ss_pred             HH
Confidence            43

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=99.18  E-value=2.7e-10  Score=121.66  Aligned_cols=164  Identities=15%  Similarity=0.103  Sum_probs=115.6

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC----CCCHHH----------------
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGK----------------  196 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~----Gg~~~~----------------  196 (690)
                      .++.|++|+|+.+=    ..|..+...+.++.++++.+..|+.|++|||..++.    |+++..                
T Consensus        11 ~~~~Va~ItLnrP~----~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~   86 (298)
T PRK12478         11 TAGPVATITLNRPE----QLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDGRWD   86 (298)
T ss_pred             ccCCEEEEEecCCc----ccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcccccccC
Confidence            36789999999862    222234456789999999999999999999987652    444321                


Q ss_pred             -HHHH----------HHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhc-C
Q 005581          197 -VEEI----------RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKV-G  263 (690)
Q Consensus       197 -~~eI----------~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKl-G  263 (690)
                       ...+          ...+..+....|||||.++ .|..+|..|+++||.+++.+.+.++...+            ++ |
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~------------~l~G  154 (298)
T PRK12478         87 PGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYS------------RMWG  154 (298)
T ss_pred             chhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEecccc------------cccc
Confidence             0111          1134456668999999999 57788999999999999999999998866            32 3


Q ss_pred             ceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeE
Q 005581          264 IEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITN  342 (690)
Q Consensus       264 I~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~  342 (690)
                      +-+           +.                     .   +...|      ......+ ++.|+.++++||+++||||+
T Consensus       155 ~~~-----------~~---------------------~---~~~~v------G~~~A~~llltg~~i~A~eA~~~GLV~~  193 (298)
T PRK12478        155 AYL-----------TG---------------------M---WLYRL------SLAKVKWHSLTGRPLTGVQAAEAELINE  193 (298)
T ss_pred             CCc-----------hh---------------------H---HHHHh------hHHHHHHHHHcCCccCHHHHHHcCCcce
Confidence            321           00                     0   11112      2233333 46789999999999999999


Q ss_pred             ecchhHHHHHHHHHh
Q 005581          343 VLYDDEVISMLKERL  357 (690)
Q Consensus       343 i~~~de~~~~l~~~~  357 (690)
                      +...+++.+.+.+.+
T Consensus       194 vv~~~~l~~~a~~~a  208 (298)
T PRK12478        194 AVPFERLEARVAEVA  208 (298)
T ss_pred             ecCHHHHHHHHHHHH
Confidence            999888877665544

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=99.17  E-value=3.7e-10  Score=120.83  Aligned_cols=164  Identities=13%  Similarity=0.145  Sum_probs=114.2

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC----CCCHHHH----------------
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV----------------  197 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~----Gg~~~~~----------------  197 (690)
                      ++.|++|+|+.+=    ..|..+...+.++.++++++..|+.|++|||+..+.    |+++...                
T Consensus        17 ~~~V~~Itlnrp~----~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~   92 (302)
T PRK08272         17 TGRIARITLNRPE----KGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGGAYPGK   92 (302)
T ss_pred             ECCEEEEEecCcc----ccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccccccccc
Confidence            5689999999762    122233356789999999999999999999987652    4444322                


Q ss_pred             ---------------------HHHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccch
Q 005581          198 ---------------------EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFL  255 (690)
Q Consensus       198 ---------------------~eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~  255 (690)
                                           ..+.+.+..+...+|||||.++ .|..+|+.|+++||.++|.+.+.||...+       
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~-------  165 (302)
T PRK08272         93 RQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPT-------  165 (302)
T ss_pred             cccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcch-------
Confidence                                 1122334455667899999999 57788999999999999999999988765       


Q ss_pred             hhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHH
Q 005581          256 GGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERL  334 (690)
Q Consensus       256 k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eA  334 (690)
                           ++|.-+                     +..             .+...+      ......+ ++.|..++++||
T Consensus       166 -----~~gg~~---------------------~~~-------------~~~~~v------G~~~A~~llltG~~i~a~eA  200 (302)
T PRK08272        166 -----RVWGVP---------------------ATG-------------MWAYRL------GPQRAKRLLFTGDCITGAQA  200 (302)
T ss_pred             -----hcccCC---------------------hHH-------------HHHHHh------hHHHHHHHHHcCCccCHHHH
Confidence                 221111                     000             011112      2233333 467899999999


Q ss_pred             HhcCCeeEecchhHHHHHHHHHh
Q 005581          335 KEEGFITNVLYDDEVISMLKERL  357 (690)
Q Consensus       335 l~~GLID~i~~~de~~~~l~~~~  357 (690)
                      ++.||||++...+++.+.+.+.+
T Consensus       201 ~~~GLv~~vv~~~~l~~~a~~la  223 (302)
T PRK08272        201 AEWGLAVEAVPPEELDERTERLV  223 (302)
T ss_pred             HHcCCCceecCHHHHHHHHHHHH
Confidence            99999999998888776655443

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=99.16  E-value=3.5e-10  Score=118.18  Aligned_cols=166  Identities=16%  Similarity=0.143  Sum_probs=121.4

Q ss_pred             CeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC----CCCHHHHH-------------HHH
Q 005581          139 GSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE-------------EIR  201 (690)
Q Consensus       139 ~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~----Gg~~~~~~-------------eI~  201 (690)
                      +.|++|+|+.+-.-    +..+...+.++.++++++..|+.|++|||.-+..    |+++....             ...
T Consensus        13 ~~v~~itlnrp~~~----Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~   88 (257)
T COG1024          13 DGIAVITLNRPEKL----NALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQ   88 (257)
T ss_pred             CCEEEEEecCcccc----cCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHH
Confidence            34999999887322    2223356789999999999999999999988753    55555421             122


Q ss_pred             HHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCc
Q 005581          202 RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQ  280 (690)
Q Consensus       202 ~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep  280 (690)
                      ..+..++...|||||.++ .|..+|+-|+++||.+++.+.+.+|...+            ++|+-|         ..+..
T Consensus        89 ~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~------------~iGl~P---------g~g~~  147 (257)
T COG1024          89 DLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEV------------NLGLLP---------GDGGT  147 (257)
T ss_pred             HHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCccc------------ccccCC---------CCcHH
Confidence            356677788999999999 57788999999999999999999999988            788866         11111


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecch-hHHHHHHHHHh
Q 005581          281 LTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYD-DEVISMLKERL  357 (690)
Q Consensus       281 ~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~-de~~~~l~~~~  357 (690)
                      +.                      +      .|-.......+ ++.|..++++||++.||||++... +++++...+.+
T Consensus       148 ~~----------------------l------~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a  198 (257)
T COG1024         148 QR----------------------L------PRLLGRGRAKELLLTGEPISAAEALELGLVDEVVPDAEELLERALELA  198 (257)
T ss_pred             HH----------------------H------HHhcCHHHHHHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHH
Confidence            10                      1      22233344444 578999999999999999998774 57766655544

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=99.16  E-value=1.9e-10  Score=120.11  Aligned_cols=167  Identities=14%  Similarity=0.084  Sum_probs=115.4

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHHH-----HH-----HH
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVEE-----IR-----RH  203 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~e-----I~-----~a  203 (690)
                      ++.|++|+++.+=.    .|..+...+.++.++++.+..|+.|++|||+..+    .|+++.....     ..     ..
T Consensus        10 ~~~v~~itlnrp~~----~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~   85 (254)
T PRK08259         10 NGPVTTVILNRPEV----RNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDGPM   85 (254)
T ss_pred             ECCEEEEEecCCcc----ccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhhcchh
Confidence            56899999998721    1222334578999999999999999999998764    3555543211     11     00


Q ss_pred             HHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCccc
Q 005581          204 VVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLT  282 (690)
Q Consensus       204 I~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~  282 (690)
                      ...+...+|||||.++ .|..+|+.|+++||.+++.+++.++...+            ++|+.+.         .+..+.
T Consensus        86 ~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~p~---------~g~~~~  144 (254)
T PRK08259         86 GPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCR------------RWGVPLI---------DGGTVR  144 (254)
T ss_pred             hhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCccc------------ccCCCCC---------ccHHHH
Confidence            1111246899999999 46688999999999999999999988766            6676541         111110


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581          283 RKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL  357 (690)
Q Consensus       283 ~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~  357 (690)
                                            +...      +......+ ++.|..++++||+++||||++...+++.+.+.+.+
T Consensus       145 ----------------------l~~~------iG~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a  192 (254)
T PRK08259        145 ----------------------LPRL------IGHSRAMDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELA  192 (254)
T ss_pred             ----------------------HHHH------hCHHHHHHHHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHH
Confidence                                  1111      22233333 46789999999999999999999888877665544

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=99.16  E-value=2.5e-10  Score=119.60  Aligned_cols=155  Identities=16%  Similarity=0.159  Sum_probs=109.0

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHH--------H------
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVE--------E------  199 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~--------e------  199 (690)
                      ++.|++|+++.+=.    .+..+...+.++.++|+++..|+.|++|||.-.+    .|+++....        .      
T Consensus        10 ~~~v~~itlnrp~~----~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~   85 (262)
T PRK07509         10 EDGIADVRLNRPDK----MNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLP   85 (262)
T ss_pred             eCCEEEEEecCccc----ccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhhhhH
Confidence            57899999998621    1222334578999999999999999999998654    245443221        1      


Q ss_pred             -----HHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeecc
Q 005581          200 -----IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGK  273 (690)
Q Consensus       200 -----I~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~  273 (690)
                           +.+.+..++...|||||.++ .|..+|..|+++||.+++.+.+.++...+            ++|+-|       
T Consensus        86 ~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~p-------  146 (262)
T PRK07509         86 GNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEA------------KWGLVP-------  146 (262)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchh------------ccCCCC-------
Confidence                 11223345567899999999 56788999999999999999999999877            677755       


Q ss_pred             ccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecc
Q 005581          274 YKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLY  345 (690)
Q Consensus       274 yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~  345 (690)
                        ..+..+.                      +      .|.+......+ ++.|..++++||+++||||++..
T Consensus       147 --~~g~~~~----------------------l------~~~~g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~  189 (262)
T PRK07509        147 --DMAGTVS----------------------L------RGLVRKDVARELTYTARVFSAEEALELGLVTHVSD  189 (262)
T ss_pred             --CchHHHH----------------------H------HHHhCHHHHHHHHHcCCCcCHHHHHHcCChhhhhc
Confidence              2211111                      1      11122333334 45789999999999999999974

>PRK08788 enoyl-CoA hydratase; Validated

Probab=99.16  E-value=3.4e-10  Score=120.06  Aligned_cols=166  Identities=15%  Similarity=0.125  Sum_probs=112.6

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhc-----CCCceEEEEEcC-C----CCCCHHHHH---------
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAY-----DPRIVGIYLHIE-P----LSCGWGKVE---------  198 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~-----D~~IkgVvL~i~-s----~Gg~~~~~~---------  198 (690)
                      ++.|++|.++ +  +.  .+..+...+.++.++++++..     |+.|++|||+-+ +    .|+++....         
T Consensus        24 ~~~ia~itl~-p--~~--~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~   98 (287)
T PRK08788         24 ERNVMWMYMR-A--QP--RPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRD   98 (287)
T ss_pred             cCCEEEEEEC-C--CC--CCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchH
Confidence            5678888875 3  21  222233457789999999987     899999999887 2    355554321         


Q ss_pred             H-------HHHHHHHHh---hcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeE
Q 005581          199 E-------IRRHVVDFK---KSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQ  267 (690)
Q Consensus       199 e-------I~~aI~~~r---~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~  267 (690)
                      .       +.+.+..+.   ..+|||||.+++ |..+|+-|+++||.+++.+.+.++...+            ++|+-| 
T Consensus        99 ~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev------------~lGl~p-  165 (287)
T PRK08788         99 ALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEI------------LFNLFP-  165 (287)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchh------------hhCcCC-
Confidence            1       111122222   578999999995 6688999999999999999999999877            777754 


Q ss_pred             EEeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecch
Q 005581          268 VQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYD  346 (690)
Q Consensus       268 ~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~  346 (690)
                              ..+..+                      .+...|.      .....+ ++.|..++++||+++||||++...
T Consensus       166 --------~~g~~~----------------------~l~~~vG------~~~A~ellltG~~l~A~eA~~~GLV~~vv~~  209 (287)
T PRK08788        166 --------GMGAYS----------------------FLARRVG------PKLAEELILSGKLYTAEELHDMGLVDVLVED  209 (287)
T ss_pred             --------CchHHH----------------------HHHHHhh------HHHHHHHHHcCCCCCHHHHHHCCCCcEecCc
Confidence                    111111                      1222222      222333 467899999999999999999988


Q ss_pred             hHHHHHHHHHh
Q 005581          347 DEVISMLKERL  357 (690)
Q Consensus       347 de~~~~l~~~~  357 (690)
                      +++.+.+.+.+
T Consensus       210 ~el~~~a~~~a  220 (287)
T PRK08788        210 GQGEAAVRTFI  220 (287)
T ss_pred             hHHHHHHHHHH
Confidence            87766554443

>PRK08321 naphthoate synthase; Validated

Probab=99.15  E-value=3.3e-10  Score=121.25  Aligned_cols=167  Identities=13%  Similarity=0.069  Sum_probs=114.3

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC-----------CCCCHHHH---------
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-----------LSCGWGKV---------  197 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s-----------~Gg~~~~~---------  197 (690)
                      ++.|++|+++.+=    ..|..+...+.++.++++.+..|+.|++|||+..+           .|+++...         
T Consensus        32 ~~~va~itlnrP~----~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~  107 (302)
T PRK08321         32 DQGTVRIAFDRPE----VRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAE  107 (302)
T ss_pred             CCCEEEEEeCCcc----cccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccc
Confidence            5679999999871    11222334577999999999999999999998753           34554321         


Q ss_pred             -------H--HH-----HHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEec-CCCeEEEeccceeccchhhhhhh
Q 005581          198 -------E--EI-----RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAP-PSAYFSLYGLTVQASFLGGVLEK  261 (690)
Q Consensus       198 -------~--eI-----~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~-p~~~vg~~Gv~~~~~~~k~lLeK  261 (690)
                             .  ..     .+....+....|||||.++ .|..+|.-|+++||.+++. +.+.++...+            +
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~------------~  175 (302)
T PRK08321        108 GDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDA------------D  175 (302)
T ss_pred             cccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCcc------------c
Confidence                   0  01     1223345567899999999 4678899999999999998 6899988766            5


Q ss_pred             cCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCe
Q 005581          262 VGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFI  340 (690)
Q Consensus       262 lGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLI  340 (690)
                      +|+.+         ..+...                      .+.+.      +......+ ++.|..++++||++.|||
T Consensus       176 ~Gl~p---------~~~~~~----------------------~L~r~------vG~~~A~~l~ltG~~~~A~eA~~~GLv  218 (302)
T PRK08321        176 VGSFD---------GGYGSA----------------------YLARQ------VGQKFAREIFFLGRTYSAEEAHDMGAV  218 (302)
T ss_pred             cccCC---------CchHHH----------------------HHHHH------hCHHHHHHHHHcCCccCHHHHHHCCCc
Confidence            56543         000000                      01122      22222333 467899999999999999


Q ss_pred             eEecchhHHHHHHHHHh
Q 005581          341 TNVLYDDEVISMLKERL  357 (690)
Q Consensus       341 D~i~~~de~~~~l~~~~  357 (690)
                      |++...+++.+.+.+.+
T Consensus       219 ~~vv~~~~l~~~a~~~a  235 (302)
T PRK08321        219 NAVVPHAELETEALEWA  235 (302)
T ss_pred             eEeeCHHHHHHHHHHHH
Confidence            99998888776655443

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=99.14  E-value=5.1e-10  Score=117.18  Aligned_cols=155  Identities=17%  Similarity=0.250  Sum_probs=109.7

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH---------------
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV---------------  197 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~---------------  197 (690)
                      .++.|++|.++.+=    ..+..+...+.++.+.++.+..|+.|++|||...+    .|+++...               
T Consensus        12 ~~~~v~~i~lnrp~----~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   87 (260)
T PRK07827         12 VDGGVATLTLDSPH----NRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAVARA   87 (260)
T ss_pred             eeCCEEEEEEcCcc----ccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHHHHH
Confidence            35689999998762    11222334578999999999999999999998764    24444321               


Q ss_pred             HHHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccc
Q 005581          198 EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS  276 (690)
Q Consensus       198 ~eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKs  276 (690)
                      ..+.+.+..+...+|||||.++ .|..+|+-|+++||.+++.+.+.++...+            ++|+-|         .
T Consensus        88 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p---------~  146 (260)
T PRK07827         88 REMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEA------------RIGVAP---------A  146 (260)
T ss_pred             HHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCccc------------ccCCCC---------C
Confidence            1234455666678999999999 46688999999999999999999999877            778755         2


Q ss_pred             cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEec
Q 005581          277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVL  344 (690)
Q Consensus       277 a~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~  344 (690)
                      .+..+.                       +..+...|     ..+-++.|..++++||+++||||++.
T Consensus       147 ~g~~~~-----------------------l~~l~~~~-----a~~l~l~g~~~~a~eA~~~Glv~~v~  186 (260)
T PRK07827        147 IISLTL-----------------------LPRLSPRA-----AARYYLTGEKFGAAEAARIGLVTAAA  186 (260)
T ss_pred             cccchh-----------------------HHhhhHHH-----HHHHHHhCCccCHHHHHHcCCcccch
Confidence            222221                       11111111     11224678999999999999999984

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=99.13  E-value=6.9e-10  Score=115.46  Aligned_cols=154  Identities=11%  Similarity=0.079  Sum_probs=107.8

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH-----H----HHHHH
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV-----E----EIRRH  203 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~-----~----eI~~a  203 (690)
                      .++.|++|+++.+=.    .|..+...+.++.++++.+..|+.|++|||...+    .|+++...     .    .+.+.
T Consensus         6 ~~~~v~~itlnrp~~----~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   81 (248)
T PRK06072          6 SREGYAIVTMSRPDK----LNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPI   81 (248)
T ss_pred             EECCEEEEEECCccc----ccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHH
Confidence            357899999998721    1222334578899999999999999999998754    35565432     1    12344


Q ss_pred             HHHHhhcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCccc
Q 005581          204 VVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLT  282 (690)
Q Consensus       204 I~~~r~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~  282 (690)
                      +..+...+|||||.+++ |..+|..|+++||.+++.+++.++...+            ++|+.|         ..+.++.
T Consensus        82 ~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~------------~~Gl~p---------~~g~~~~  140 (248)
T PRK06072         82 IREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQ------------RLGLAS---------DTGVAYF  140 (248)
T ss_pred             HHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchh------------hcCcCC---------CchHHHH
Confidence            55566788999999994 6688999999999999999999987755            677755         1111110


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEe
Q 005581          283 RKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNV  343 (690)
Q Consensus       283 ~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i  343 (690)
                                            +...+.      ....+-++.|..++++||+++||||.+
T Consensus       141 ----------------------l~~~~g------~~a~~lll~g~~~~a~eA~~~Glv~~~  173 (248)
T PRK06072        141 ----------------------LLKLTG------QRFYEILVLGGEFTAEEAERWGLLKIS  173 (248)
T ss_pred             ----------------------HHHHhh------HHHHHHHHhCCccCHHHHHHCCCcccc
Confidence                                  111111      111223567899999999999999975

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=99.13  E-value=6.1e-10  Score=116.07  Aligned_cols=154  Identities=14%  Similarity=0.153  Sum_probs=111.5

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH---------HHHHHHH
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV---------EEIRRHV  204 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~---------~eI~~aI  204 (690)
                      ++.|++|+++.+  +.   |..+...+.++.+.++.+..||.+++|||..++    .|+++...         ..+.+.+
T Consensus         8 ~~~v~~itlnrp--~~---Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~   82 (251)
T TIGR03189         8 DGKLLRLRLARP--KA---NIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLV   82 (251)
T ss_pred             eCCEEEEEeCCC--Cc---CCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHH
Confidence            567999999998  21   223445678999999999999999999998764    35554431         1123445


Q ss_pred             HHHhhcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccC
Q 005581          205 VDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTR  283 (690)
Q Consensus       205 ~~~r~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~  283 (690)
                      ..+...+|||||.+++ |..+|..|+++||.+++.+.+.++...+            ++|+.+.         .+ .+  
T Consensus        83 ~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~------------~~Gl~p~---------~~-~~--  138 (251)
T TIGR03189        83 IAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEI------------VLGVFAP---------AA-SC--  138 (251)
T ss_pred             HHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchh------------hcCCCCC---------ch-HH--
Confidence            5566789999999994 6689999999999999999999999877            7777541         00 00  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecch
Q 005581          284 KTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYD  346 (690)
Q Consensus       284 ~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~  346 (690)
                                          .+.      |.+......+ ++.|..++++||+++||||++...
T Consensus       139 --------------------~l~------~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~  176 (251)
T TIGR03189       139 --------------------LLP------ERMGRVAAEDLLYSGRSIDGAEGARIGLANAVAED  176 (251)
T ss_pred             --------------------HHH------HHhCHHHHHHHHHcCCCCCHHHHHHCCCcceecCc
Confidence                                011      2233333344 456889999999999999999754

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=99.12  E-value=1.1e-09  Score=119.27  Aligned_cols=167  Identities=9%  Similarity=-0.016  Sum_probs=119.0

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC-----CCCCHHHHH-------------
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-----LSCGWGKVE-------------  198 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s-----~Gg~~~~~~-------------  198 (690)
                      .++.|++|+++.+=    ..+..+...+.++.+.++.+..||.|++|||+..+     .|+++....             
T Consensus         9 ~~~~v~~itLnrP~----~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~   84 (342)
T PRK05617          9 VEGGVGVITLNRPK----ALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADR   84 (342)
T ss_pred             EECCEEEEEECCCc----cccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHH
Confidence            35789999998752    11222335578899999999999999999999865     255554321             


Q ss_pred             ---HHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccc
Q 005581          199 ---EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKY  274 (690)
Q Consensus       199 ---eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~y  274 (690)
                         .+.+....+...+|||||.++ .|..+|..|+++||.++|.+.+.++...+            ++|+-|        
T Consensus        85 ~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~------------~lGl~P--------  144 (342)
T PRK05617         85 FFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPET------------GIGFFP--------  144 (342)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCcc------------ccCcCC--------
Confidence               111233445667899999999 46788999999999999999999999988            888876        


Q ss_pred             cccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHHH
Q 005581          275 KSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLK  354 (690)
Q Consensus       275 Ksa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~  354 (690)
                       ..+..+..                      ..     + ......+-++.|..++++||++.||||++...+++.....
T Consensus       145 -~~g~~~~L----------------------~r-----~-~g~~a~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~  195 (342)
T PRK05617        145 -DVGGTYFL----------------------SR-----A-PGALGTYLALTGARISAADALYAGLADHFVPSADLPALLD  195 (342)
T ss_pred             -CccceeEe----------------------hh-----c-ccHHHHHHHHcCCCCCHHHHHHcCCcceecCHHHHHHHHH
Confidence             22222211                      00     0 0111223356799999999999999999999888776544


Q ss_pred             HH
Q 005581          355 ER  356 (690)
Q Consensus       355 ~~  356 (690)
                      +.
T Consensus       196 ~~  197 (342)
T PRK05617        196 AL  197 (342)
T ss_pred             HH
Confidence            43

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=99.10  E-value=5.5e-10  Score=120.48  Aligned_cols=158  Identities=15%  Similarity=0.026  Sum_probs=110.3

Q ss_pred             eEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC-----CCCHHHHH---------------H
Q 005581          140 SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKVE---------------E  199 (690)
Q Consensus       140 ~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~-----Gg~~~~~~---------------e  199 (690)
                      .+++|.|+.+=    ..+..+...+.++.++++++..|++|++|||...++     |+++....               .
T Consensus        37 ~~A~ItLNRP~----k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~  112 (360)
T TIGR03200        37 YNAWIILDNPK----QYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRL  112 (360)
T ss_pred             EEEEEEECCCC----ccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHH
Confidence            45568888762    112223345789999999999999999999988652     44443221               1


Q ss_pred             HHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccC
Q 005581          200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG  278 (690)
Q Consensus       200 I~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~  278 (690)
                      ..+.+..+....|||||.++ .|..+|.-|+++||.+++.+.+.|+...+            ++|+-|         ..+
T Consensus       113 ~~~l~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~------------rlGl~P---------~~G  171 (360)
T TIGR03200       113 FNDMVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGP------------KHGSAP---------IGG  171 (360)
T ss_pred             HHHHHHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchh------------ccCCCC---------Ccc
Confidence            22344556677899999999 57788999999999999999999999888            777765         111


Q ss_pred             CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHH
Q 005581          279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEV  349 (690)
Q Consensus       279 ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~  349 (690)
                      ..+                      .+...+...|.     ..-++.|..++++||++.||||++...+++
T Consensus       172 gt~----------------------rLprlvG~~rA-----~~llltGe~~sA~EA~~~GLVd~VVp~~~~  215 (360)
T TIGR03200       172 ATD----------------------FLPLMIGCEQA-----MVSGTLCEPWSAHKAKRLGIIMDVVPALKV  215 (360)
T ss_pred             HHH----------------------HHHHhhCHHHH-----HHHHHhCCcCcHHHHHHcCChheecCchhc
Confidence            111                      02222222221     122567899999999999999999876654

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.08  E-value=8.1e-10  Score=130.90  Aligned_cols=167  Identities=11%  Similarity=0.057  Sum_probs=119.8

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHH---------------
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVE---------------  198 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~---------------  198 (690)
                      ++.|++|+|+.+=    ..|..+...+.++.++++.+..|+.|++|||.-.+    .|+++....               
T Consensus        14 ~~~v~~itlnrp~----~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~   89 (715)
T PRK11730         14 EDGIAELVFDAPG----SVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLH   89 (715)
T ss_pred             CCCEEEEEEcCCC----CCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHH
Confidence            5789999998751    12222334578999999999999999999998865    245553321               


Q ss_pred             HHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeecccccc
Q 005581          199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA  277 (690)
Q Consensus       199 eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa  277 (690)
                      .+.+.+..+...+|||||.++ .|..+|+-||++||.+++.+.+.+|...+            ++|+-|         ..
T Consensus        90 ~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~------------~lGl~p---------~~  148 (715)
T PRK11730         90 FANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPET------------KLGIMP---------GF  148 (715)
T ss_pred             HHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchh------------hcCCCC---------Cc
Confidence            122344556678999999999 57788999999999999999999999988            788866         22


Q ss_pred             CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581          278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKER  356 (690)
Q Consensus       278 ~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~  356 (690)
                      +.++.                      +      .|-+......+ ++.|+.++++||+++||||++...+++.+...+.
T Consensus       149 g~~~~----------------------L------~rlvG~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~  200 (715)
T PRK11730        149 GGTVR----------------------L------PRLIGADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALAL  200 (715)
T ss_pred             hHHHH----------------------H------HHhcCHHHHHHHHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHH
Confidence            22221                      1      12122333333 4678999999999999999999888877655443


Q ss_pred             h
Q 005581          357 L  357 (690)
Q Consensus       357 ~  357 (690)
                      +
T Consensus       201 a  201 (715)
T PRK11730        201 L  201 (715)
T ss_pred             H
Confidence            3

>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily

Probab=99.07  E-value=1.3e-09  Score=112.20  Aligned_cols=169  Identities=16%  Similarity=0.151  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCe
Q 005581          164 LPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAY  242 (690)
Q Consensus       164 ~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~  242 (690)
                      ...+.++|+.+.+|   ++|.|.++||||.+.+++.|.++|+++   ..++++|+. .|.|+|.+||++||+|||.|.+.
T Consensus        77 se~v~raI~~~~~~---~~IdLii~TpGG~v~AA~~I~~~l~~~---~~~v~v~VP~~A~SAGTlIALaADeIvM~p~a~  150 (285)
T PF01972_consen   77 SEFVLRAIREAPKD---KPIDLIIHTPGGLVDAAEQIARALREH---PAKVTVIVPHYAMSAGTLIALAADEIVMGPGAV  150 (285)
T ss_pred             HHHHHHHHHhcCCC---CceEEEEECCCCcHHHHHHHHHHHHhC---CCCEEEEECcccccHHHHHHHhCCeEEECCCCc
Confidence            45678888887655   467888999999999999999999965   578999998 78899999999999999999999


Q ss_pred             EEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Q 005581          243 FSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER  322 (690)
Q Consensus       243 vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~  322 (690)
                      +|.+-...........++.+--+      +.-+..-+++.   +.+-.++.+    +.+. +|+..+-+. +++.+++++
T Consensus       151 LGpiDPqi~~~pA~sil~~~~~K------~~~~i~D~tlI---ladia~KAi----~q~~-~~v~~lL~~-~~~~eka~~  215 (285)
T PF01972_consen  151 LGPIDPQIGQYPAASILKAVEQK------PPDEIDDQTLI---LADIAEKAI----RQVR-EFVKELLKD-KMDEEKAEE  215 (285)
T ss_pred             cCCCCccccCCChHHHHHHHHhc------cccccCHHHHH---HHHHHHHHH----HHHH-HHHHHHHHc-CCCHHHHHH
Confidence            99886644433332222221000      00000001111   111111222    2221 233333333 466666666


Q ss_pred             HHh---------cCcccHHHHHhcCCeeEecchhHHHHHH
Q 005581          323 FIN---------DGVYKVERLKEEGFITNVLYDDEVISML  353 (690)
Q Consensus       323 ~~~---------~~v~~a~eAl~~GLID~i~~~de~~~~l  353 (690)
                      +.+         +.+++.+||+++||==...-++|+.+.+
T Consensus       216 ia~~L~~g~~tHdypi~~eea~~lGL~V~t~~p~ei~~lm  255 (285)
T PF01972_consen  216 IAEKLSSGKWTHDYPITVEEAKELGLPVSTDMPEEIYELM  255 (285)
T ss_pred             HHHHhcCCCCCCCCCCCHHHHHHcCCCcCCCCcHHHHHHH
Confidence            544         2466899999999965556667776655

The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=99.06  E-value=1.5e-09  Score=113.35  Aligned_cols=156  Identities=12%  Similarity=0.086  Sum_probs=107.5

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH--------------H
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV--------------E  198 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~--------------~  198 (690)
                      .++.|++|.++.+=    ..+..+.-.+.++.++++++.  +.|++|||..++    .|+++...              .
T Consensus        10 ~~~~i~~itlnrp~----~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~   83 (255)
T PRK07112         10 QQGDVCFLQLHRPE----AQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDAE   83 (255)
T ss_pred             eeCCEEEEEEcCCC----ccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhHH
Confidence            35689999999862    112223345778999999887  359999998654    34544321              1


Q ss_pred             HHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeecccccc
Q 005581          199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA  277 (690)
Q Consensus       199 eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa  277 (690)
                      .+.+.+..+...+|||||.++ .|..+|+.|+++||.+++.+.+.|+...+            ++|+-|.         .
T Consensus        84 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~------------~~Gl~p~---------~  142 (255)
T PRK07112         84 PLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSEL------------LFGLIPA---------C  142 (255)
T ss_pred             HHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchh------------hhccCcc---------h
Confidence            123445566678999999999 56788999999999999999999998877            6776441         0


Q ss_pred             CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhH
Q 005581          278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDE  348 (690)
Q Consensus       278 ~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de  348 (690)
                      +.+                       .+...      +......+ ++.|..++++||+++||||++...++
T Consensus       143 ~~~-----------------------~l~~~------vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~  185 (255)
T PRK07112        143 VLP-----------------------FLIRR------IGTQKAHYMTLMTQPVTAQQAFSWGLVDAYGANSD  185 (255)
T ss_pred             hhH-----------------------HHHHH------hCHHHHHHHHHhCCcccHHHHHHcCCCceecCcHH
Confidence            000                       01122      22233333 56789999999999999999986554

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=99.03  E-value=1.8e-09  Score=127.75  Aligned_cols=167  Identities=11%  Similarity=0.041  Sum_probs=120.5

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC----CCCHHHHH---------------
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE---------------  198 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~----Gg~~~~~~---------------  198 (690)
                      ++.|++|+++.+=    ..|..+...+.++.++|+++..|+.|++|||+-+..    |+++....               
T Consensus        14 ~~gva~Itlnrp~----~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~   89 (714)
T TIGR02437        14 EDGIAELKFDAPG----SVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQWLL   89 (714)
T ss_pred             cCCEEEEEECCCC----CCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHHHHH
Confidence            5789999998751    122223345789999999999999999999987642    44543211               


Q ss_pred             HHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeecccccc
Q 005581          199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA  277 (690)
Q Consensus       199 eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa  277 (690)
                      .+.+.+..+...+|||||.++ .|..+|+-||++||.+++.+.+.+|+..+            ++|+-|         ..
T Consensus        90 ~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv------------~lGl~P---------g~  148 (714)
T TIGR02437        90 FANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPET------------KLGIMP---------GF  148 (714)
T ss_pred             HHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchh------------hcCCCC---------Cc
Confidence            133445566678999999999 57789999999999999999999999988            888866         22


Q ss_pred             CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581          278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKER  356 (690)
Q Consensus       278 ~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~  356 (690)
                      +..+.                      +...      +......+ ++.|..+++++|++.||||++...+++.+...+.
T Consensus       149 Ggt~r----------------------L~rl------iG~~~A~~llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~  200 (714)
T TIGR02437       149 GGTVR----------------------LPRV------IGADNALEWIASGKENRAEDALKVGAVDAVVTADKLGAAALQL  200 (714)
T ss_pred             cHHHH----------------------HHHH------hCHHHHHHHHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHH
Confidence            22211                      1111      22222223 5678999999999999999999888877665544


Q ss_pred             h
Q 005581          357 L  357 (690)
Q Consensus       357 ~  357 (690)
                      +
T Consensus       201 a  201 (714)
T TIGR02437       201 L  201 (714)
T ss_pred             H
Confidence            4

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=99.01  E-value=3.4e-09  Score=116.81  Aligned_cols=165  Identities=11%  Similarity=0.002  Sum_probs=115.0

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHH-------H-------
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVE-------E-------  199 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~-------e-------  199 (690)
                      ++.|++|+|+.+=    ..|..+...+.++.++|+.+..|+.|++|||+..+    .|+++....       .       
T Consensus        18 ~~~v~~ItLnrP~----~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~   93 (379)
T PLN02874         18 KGRVRVITLNRPR----QLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVVYR   93 (379)
T ss_pred             ECCEEEEEECCCc----cccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHHHHHHH
Confidence            5678889988762    11222334578899999999999999999998764    255554321       1       


Q ss_pred             HHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccC
Q 005581          200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG  278 (690)
Q Consensus       200 I~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~  278 (690)
                      +...+..+...+|||||.++ .|..+|.-|+++||.+++.+.+.++...+            ++|+-|         ..+
T Consensus        94 ~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~------------~iGl~p---------~~g  152 (379)
T PLN02874         94 MYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEA------------SVGFHT---------DCG  152 (379)
T ss_pred             HHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEecccc------------ccCcCC---------Chh
Confidence            11113345567899999999 57788999999999999999999999877            777765         222


Q ss_pred             CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHHHH
Q 005581          279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKE  355 (690)
Q Consensus       279 ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~  355 (690)
                      ..+.                      +...+. .+     ...-++.|..+++++|+++||||++...+++.+...+
T Consensus       153 ~~~~----------------------L~rl~g-~~-----a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~  201 (379)
T PLN02874        153 FSYI----------------------LSRLPG-HL-----GEYLALTGARLNGKEMVACGLATHFVPSEKLPELEKR  201 (379)
T ss_pred             HHHH----------------------HHhhhH-HH-----HHHHHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHH
Confidence            2221                      011111 01     1123578999999999999999999998887763333

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=99.01  E-value=8.7e-09  Score=105.89  Aligned_cols=164  Identities=13%  Similarity=0.111  Sum_probs=112.2

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH-----------HHHHH
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV-----------EEIRR  202 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~-----------~eI~~  202 (690)
                      ++.|++|+++.+  +   .+..+...+.++.++++++.  +++++||+..+.    .|+++...           ..+.+
T Consensus        10 ~~~v~~itln~~--~---~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~   82 (229)
T PRK06213         10 EDGVATITLDDG--K---VNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSGAQAAIALLTAGST   82 (229)
T ss_pred             cCCEEEEEeCCC--C---CCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcchHhHHHHHHHHHH
Confidence            568999999974  1   12223345788999999887  457889998764    24444321           12334


Q ss_pred             HHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCC-CeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCc
Q 005581          203 HVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPS-AYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQ  280 (690)
Q Consensus       203 aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~-~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep  280 (690)
                      .+.++...+|||||.++ .|..+|..|+++||.++|.+. +.++...+            ++|+.+.             
T Consensus        83 l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~------------~~Gl~~~-------------  137 (229)
T PRK06213         83 LARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEV------------AIGMTMP-------------  137 (229)
T ss_pred             HHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchh------------hhCCcCC-------------
Confidence            45566667999999999 567889999999999999999 88998877            6676430             


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581          281 LTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL  357 (690)
Q Consensus       281 ~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~  357 (690)
                      ..       .-..+.           .      .+.....++ ++.|..++++||+++||||++...+++.+...+.+
T Consensus       138 ~~-------~~~~l~-----------~------~~g~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a  191 (229)
T PRK06213        138 HA-------AIELAR-----------D------RLTPSAFQRAVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAA  191 (229)
T ss_pred             hH-------HHHHHH-----------H------HcCHHHHHHHHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHH
Confidence            00       000000           1      111122222 56789999999999999999998888877665544

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=98.99  E-value=4.4e-09  Score=116.22  Aligned_cols=159  Identities=12%  Similarity=0.004  Sum_probs=112.7

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHHH--------------
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVEE--------------  199 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~e--------------  199 (690)
                      ++.|++|+|+.+=    ..|..+...+.++.++|+.+..|+.|++|||+..+    .||++.....              
T Consensus        44 ~g~v~~ItLNRP~----~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~~  119 (401)
T PLN02157         44 SGCSRTAILNRPP----ALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIREFF  119 (401)
T ss_pred             ECCEEEEEECCCC----ccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHH
Confidence            5678888888772    22222334567899999999999999999999765    3566643211              


Q ss_pred             --HHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccc
Q 005581          200 --IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS  276 (690)
Q Consensus       200 --I~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKs  276 (690)
                        .++....+...+|||||.++ .+..||.-|+++||.+++.+.+.++...+            ++|+-|         .
T Consensus       120 ~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~------------~iGl~P---------d  178 (401)
T PLN02157        120 SSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPET------------IIGFHP---------D  178 (401)
T ss_pred             HHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhh------------hcCCCC---------C
Confidence              11223345567999999999 57788999999999999999999999877            777766         2


Q ss_pred             cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHH
Q 005581          277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEV  349 (690)
Q Consensus       277 a~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~  349 (690)
                      .+..+.           +..+           +. .+     ...=+++|..++++||++.||||++...+++
T Consensus       179 ~G~s~~-----------L~rl-----------~G-~~-----a~~L~LTG~~i~A~eA~~~GLv~~vVp~~~l  223 (401)
T PLN02157        179 AGASFN-----------LSHL-----------PG-RL-----GEYLGLTGLKLSGAEMLACGLATHYIRSEEI  223 (401)
T ss_pred             ccHHHH-----------HHHh-----------hh-HH-----HHHHHHcCCcCCHHHHHHcCCceEEeCHhHH
Confidence            333321           1111           11 01     1122567999999999999999999988876

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=98.98  E-value=3.2e-09  Score=125.62  Aligned_cols=170  Identities=12%  Similarity=0.141  Sum_probs=119.9

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEc-CC----CCCCHHHH-------------H
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHI-EP----LSCGWGKV-------------E  198 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i-~s----~Gg~~~~~-------------~  198 (690)
                      .++.|++|+++.+=   ...|..+...+.++.+.|+++..|+.|++|||.- ..    .|+++...             .
T Consensus         7 ~~~~Va~itlnrp~---~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~   83 (699)
T TIGR02440         7 REDGIAILTIDVPG---EKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQ   83 (699)
T ss_pred             cCCCEEEEEECCCC---CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHH
Confidence            45789999999761   1112233345789999999999999999999743 22    24554431             1


Q ss_pred             HHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCC--CeEEEeccceeccchhhhhhhcCceeEEEeecccc
Q 005581          199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPS--AYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYK  275 (690)
Q Consensus       199 eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~--~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yK  275 (690)
                      ...+.+..+...+|||||.++ .|..+|+.||++||.++|.++  +.+|...+            ++|+-|         
T Consensus        84 ~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev------------~lGl~p---------  142 (699)
T TIGR02440        84 QGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEV------------QLGLLP---------  142 (699)
T ss_pred             HHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhh------------cccCCC---------
Confidence            123345567778999999999 577899999999999999976  68999988            888866         


Q ss_pred             ccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHH
Q 005581          276 SAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLK  354 (690)
Q Consensus       276 sa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~  354 (690)
                      ..+..+.                      +      .|-+......+ ++.|..+++++|+++||||++...+++.+...
T Consensus       143 ~~g~~~~----------------------L------~r~vG~~~A~~llltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~  194 (699)
T TIGR02440       143 GSGGTQR----------------------L------PRLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPQSILLDTAV  194 (699)
T ss_pred             CccHHHH----------------------H------HHhcCHHHHHHHHHcCCcCCHHHHHhCCCCcEecChhHHHHHHH
Confidence            1221111                      1      11222233333 46789999999999999999999888887766


Q ss_pred             HHhC
Q 005581          355 ERLG  358 (690)
Q Consensus       355 ~~~g  358 (690)
                      +.+.
T Consensus       195 ~~A~  198 (699)
T TIGR02440       195 EMAL  198 (699)
T ss_pred             HHHH
Confidence            6553

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=98.97  E-value=6.9e-09  Score=114.17  Aligned_cols=167  Identities=13%  Similarity=0.047  Sum_probs=117.2

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC----CCCHHHHH------------H-H
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE------------E-I  200 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~----Gg~~~~~~------------e-I  200 (690)
                      ++.|++|+|+.+=    ..|..+.-.+.+|.++|+++..|++|++|||+..+.    ||++....            + .
T Consensus        16 ~~~i~~ItLnRP~----~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~~f   91 (381)
T PLN02988         16 KSSVRILTLNRPK----QLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGANFF   91 (381)
T ss_pred             ECCEEEEEECCCC----ccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHHHH
Confidence            5789999998772    112223345788999999999999999999998652    56654421            0 1


Q ss_pred             ---HHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccc
Q 005581          201 ---RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS  276 (690)
Q Consensus       201 ---~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKs  276 (690)
                         +.....+...+|||||.++ .+..+|.-|+++||.+++.+.+.++...+            ++|+-|         .
T Consensus        92 ~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~------------~iGl~P---------d  150 (381)
T PLN02988         92 SDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPET------------ALGLFP---------D  150 (381)
T ss_pred             HHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhh------------hcCcCC---------C
Confidence               1122234457899999999 57788999999999999999999998877            677655         3


Q ss_pred             cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581          277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKER  356 (690)
Q Consensus       277 a~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~  356 (690)
                      .+..+.           +..++.            .++     ..=.+.|..+++++|++.||||++...+++.+...+.
T Consensus       151 ~G~s~~-----------L~rl~G------------~~~-----~~l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l  202 (381)
T PLN02988        151 VGASYF-----------LSRLPG------------FFG-----EYVGLTGARLDGAEMLACGLATHFVPSTRLTALEADL  202 (381)
T ss_pred             ccHHHH-----------HHHHHH------------HHH-----HHHHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHH
Confidence            333321           111111            111     1225678999999999999999999888877765554


Q ss_pred             h
Q 005581          357 L  357 (690)
Q Consensus       357 ~  357 (690)
                      .
T Consensus       203 a  203 (381)
T PLN02988        203 C  203 (381)
T ss_pred             H
Confidence            4

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.94  E-value=6.7e-09  Score=123.14  Aligned_cols=168  Identities=10%  Similarity=0.103  Sum_probs=119.2

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC-----CCCCHHHH---------H----H
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-----LSCGWGKV---------E----E  199 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s-----~Gg~~~~~---------~----e  199 (690)
                      ++.|++|+++.+=   ...|..+...+.++.+.++++..|++|++|||.-..     .|+++...         .    .
T Consensus        13 ~~~va~itlnrp~---~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~   89 (708)
T PRK11154         13 EDNIAVITIDVPG---EKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQ   89 (708)
T ss_pred             CCCEEEEEECCCC---CCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHH
Confidence            6789999999761   111222334578999999999999999999997532     24554321         1    1


Q ss_pred             HHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCC--eEEEeccceeccchhhhhhhcCceeEEEeeccccc
Q 005581          200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSA--YFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS  276 (690)
Q Consensus       200 I~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~--~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKs  276 (690)
                      ..+.+..+...+|||||.++ .|..+|+-||++||.+++.+++  .+|...+            ++|+-|         .
T Consensus        90 ~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~------------~lGl~p---------~  148 (708)
T PRK11154         90 GQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEV------------QLGLLP---------G  148 (708)
T ss_pred             HHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccc------------cCCCCC---------C
Confidence            23345566678999999999 5778999999999999999874  8999988            888866         2


Q ss_pred             cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHH
Q 005581          277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKE  355 (690)
Q Consensus       277 a~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~  355 (690)
                      .+..+.                      +.      |-+......+ ++.|..++++||+++||||++...+++.+...+
T Consensus       149 ~gg~~~----------------------L~------r~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~  200 (708)
T PRK11154        149 SGGTQR----------------------LP------RLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVE  200 (708)
T ss_pred             ccHHhH----------------------HH------hhcCHHHHHHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHH
Confidence            222111                      11      1222333333 467899999999999999999988887766655


Q ss_pred             Hh
Q 005581          356 RL  357 (690)
Q Consensus       356 ~~  357 (690)
                      .+
T Consensus       201 ~A  202 (708)
T PRK11154        201 LA  202 (708)
T ss_pred             HH
Confidence            54

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=98.91  E-value=4.1e-08  Score=101.67  Aligned_cols=166  Identities=12%  Similarity=0.119  Sum_probs=110.1

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCce-EEEEEcCC----CCCCHHHHH-------------
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIV-GIYLHIEP----LSCGWGKVE-------------  198 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~Ik-gVvL~i~s----~Gg~~~~~~-------------  198 (690)
                      .++.|++|.|+.+  +.   +-.+...+.+|.++++++..|++++ .||+.-++    .|+++....             
T Consensus         6 ~~~~v~~i~Lnrp--~~---Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~   80 (239)
T PLN02267          6 KRGNLFILTLTGD--GE---HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMV   80 (239)
T ss_pred             ecCCEEEEEeCCC--Cc---CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHH
Confidence            3578999999987  21   1123345778999999999999976 45455442    355543211             


Q ss_pred             -HHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecC-CCeEEEeccceeccchhhhhhhcCce-eEEEeeccc
Q 005581          199 -EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPP-SAYFSLYGLTVQASFLGGVLEKVGIE-PQVQRIGKY  274 (690)
Q Consensus       199 -eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p-~~~vg~~Gv~~~~~~~k~lLeKlGI~-~~~~~~G~y  274 (690)
                       .+.+.+..+...+|||||.++ .|..+|..||++||.++|.+ .+.++...+            ++|+. +.       
T Consensus        81 ~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~------------~~Gl~~p~-------  141 (239)
T PLN02267         81 AKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEV------------DIGLPLPD-------  141 (239)
T ss_pred             HHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEecccc------------ccCCCCCh-------
Confidence             122344456667899999999 46688999999999999974 578888766            66664 20       


Q ss_pred             cccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH-HH-HHhcCcccHHHHHhcCCeeEecc-hhHHHH
Q 005581          275 KSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDI-ER-FINDGVYKVERLKEEGFITNVLY-DDEVIS  351 (690)
Q Consensus       275 Ksa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v-~~-~~~~~v~~a~eAl~~GLID~i~~-~de~~~  351 (690)
                        .+                ...       +      .|.+..... ++ ++.|..++++||++.||||++.. .+++.+
T Consensus       142 --~~----------------~~~-------l------~~~vG~~~a~~~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~  190 (239)
T PLN02267        142 --YF----------------MAL-------L------RAKIGSPAARRDVLLRAAKLTAEEAVEMGIVDSAHDSAEETVE  190 (239)
T ss_pred             --HH----------------HHH-------H------HHHcChHHHHHHHHHcCCcCCHHHHHHCCCcceecCCHHHHHH
Confidence              00                000       1      122222233 23 56789999999999999999986 467776


Q ss_pred             HHHHHh
Q 005581          352 MLKERL  357 (690)
Q Consensus       352 ~l~~~~  357 (690)
                      ...+.+
T Consensus       191 ~a~~~A  196 (239)
T PLN02267        191 AAVRLG  196 (239)
T ss_pred             HHHHHH
Confidence            655544

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=98.89  E-value=2.4e-08  Score=110.52  Aligned_cols=159  Identities=9%  Similarity=-0.011  Sum_probs=111.4

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHHH--------------
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVEE--------------  199 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~e--------------  199 (690)
                      .+.+.+|+|+.+=    ..|..+..++.++.++|+.+..|++|++|||+.++    -||++....+              
T Consensus        49 ~~~~~~ItLNRP~----~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f  124 (407)
T PLN02851         49 RAKSRAAILNRPS----SLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFF  124 (407)
T ss_pred             ECCEEEEEECCCC----cCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHH
Confidence            4567778887762    22223334578899999999999999999999864    3566543311              


Q ss_pred             --HHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccc
Q 005581          200 --IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS  276 (690)
Q Consensus       200 --I~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKs  276 (690)
                        +++....+...+|||||.++ .+.++|..|+++||.+++.+.+.++...+            ++|+-|         .
T Consensus       125 ~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~------------~iGl~P---------d  183 (407)
T PLN02851        125 ENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEV------------QMGFHP---------D  183 (407)
T ss_pred             HHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchh------------ccCCCC---------C
Confidence              12223334457899999999 57788999999999999999999999877            777765         2


Q ss_pred             cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHH
Q 005581          277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEV  349 (690)
Q Consensus       277 a~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~  349 (690)
                      .|..|.                       +..+-   |  .....-.++|..+++++|++.||+|.+...+++
T Consensus       184 vG~s~~-----------------------L~rl~---g--~~g~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l  228 (407)
T PLN02851        184 AGASYY-----------------------LSRLP---G--YLGEYLALTGQKLNGVEMIACGLATHYCLNARL  228 (407)
T ss_pred             ccHHHH-----------------------HHHhc---C--HHHHHHHHhCCcCCHHHHHHCCCceeecCHhhH
Confidence            222221                       11110   1  011122467999999999999999999887776

>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=98.87  E-value=1e-08  Score=100.56  Aligned_cols=160  Identities=19%  Similarity=0.216  Sum_probs=114.2

Q ss_pred             CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcch----------hhh-----
Q 005581          388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDA----------LAS-----  448 (690)
Q Consensus       388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~----------~as-----  448 (690)
                      +.|--|.++.+-..      +..+-.|...|.+.|.+-.++.++|+|||..+    |.|-..          ...     
T Consensus        40 ~gvR~i~l~npKk~------NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haevFqt  113 (287)
T KOG1682|consen   40 NGVREITLNNPKKL------NTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEVFQT  113 (287)
T ss_pred             cceeeeeecCcccc------chhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCccchHHHHHHHH
Confidence            45666666666542      33444567788888888888899999999765    333222          111     


Q ss_pred             -hHHHHHHHHhcCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeeccc
Q 005581          449 -DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRG  523 (690)
Q Consensus       449 -~~i~~~I~~l~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g  523 (690)
                       ..+..-|+++  +.|||+-++|+|+.+|+.+...||.++|+.++.+--    .|+|...|+.                 
T Consensus       114 c~dvmn~Irn~--pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGv-----------------  174 (287)
T KOG1682|consen  114 CTDVMNDIRNL--PVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGV-----------------  174 (287)
T ss_pred             HHHHHHHHhcC--CCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcch-----------------
Confidence             1122334444  999999999999999999999999999999998753    4445444433                 


Q ss_pred             chhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHH-HHHHHhcCCcccHHHHHHcCCcccccChHHHHHH
Q 005581          524 KYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVD-KMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAI  602 (690)
Q Consensus       524 ~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~-~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~  602 (690)
                                                          +..|-++.. .++.+++|..++++||+-.|||.++.+.++.-.+
T Consensus       175 ------------------------------------AlaRavpRkva~~ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~e  218 (287)
T KOG1682|consen  175 ------------------------------------ALARAVPRKVAAYMLMTGLPITGEEALISGLVSKVVPAEELDKE  218 (287)
T ss_pred             ------------------------------------hHhhhcchhHHHHHHHhCCCCchHHHHHhhhhhhcCCHHHHHHH
Confidence                                                334444443 5577899999999999999999999998887666


Q ss_pred             HHHHcC
Q 005581          603 AKQKAN  608 (690)
Q Consensus       603 a~~~a~  608 (690)
                      +.+.++
T Consensus       219 ~~~i~~  224 (287)
T KOG1682|consen  219 IEEITN  224 (287)
T ss_pred             HHHHHH
Confidence            665543

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=98.85  E-value=2.4e-08  Score=118.67  Aligned_cols=157  Identities=19%  Similarity=0.193  Sum_probs=108.8

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEE-EcCC----CCCCHHHH-------------HH
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYL-HIEP----LSCGWGKV-------------EE  199 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL-~i~s----~Gg~~~~~-------------~e  199 (690)
                      ++.|++|+++.+=.   ..|-.+.....++.++|+++..|+.|++||| ...+    -|+++...             ..
T Consensus        20 ~~gVa~itlnrP~~---~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   96 (737)
T TIGR02441        20 KGDVAVVKIDSPNS---KVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQEVTQLSQE   96 (737)
T ss_pred             ECCEEEEEEcCCCC---CCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChHHHHHHHHH
Confidence            67899999987620   1122233457889999999999999998765 4433    24444322             12


Q ss_pred             HHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCC--CeEEEeccceeccchhhhhhhcCceeEEEeeccccc
Q 005581          200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPS--AYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS  276 (690)
Q Consensus       200 I~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~--~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKs  276 (690)
                      ..+.+..+...+|||||.++ .|..+|+.||++||.++|.++  +.+|...+            ++|+-|         .
T Consensus        97 ~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv------------~lGl~P---------g  155 (737)
T TIGR02441        97 GQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEV------------MLGLLP---------G  155 (737)
T ss_pred             HHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchh------------hhCCCC---------C
Confidence            23445556678999999999 577899999999999999987  47999888            788766         2


Q ss_pred             cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecch
Q 005581          277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYD  346 (690)
Q Consensus       277 a~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~  346 (690)
                      .+..+.                      +.      |-+......+ ++.|+.+++++|+++||||++...
T Consensus       156 ~Ggt~r----------------------Lp------rliG~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~  198 (737)
T TIGR02441       156 AGGTQR----------------------LP------KLTGVPAALDMMLTGKKIRADRAKKMGIVDQLVDP  198 (737)
T ss_pred             ccHhhh----------------------HH------HhhCHHHHHHHHHcCCcCCHHHHHHCCCCeEecCC
Confidence            222211                      11      1122222223 567899999999999999999875

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=3.6e-08  Score=100.09  Aligned_cols=161  Identities=19%  Similarity=0.137  Sum_probs=116.7

Q ss_pred             EEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEecCcc
Q 005581          143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCG  222 (690)
Q Consensus       143 vI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~~aa  222 (690)
                      +|-|-++|++.-         .+.|+.+|--...++.-|=|++.||||||.+.+...|++.++..| +..-+||+..-+.
T Consensus        94 Ii~lg~~Idd~v---------a~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtaglAIYDtMq~ik-~~V~Tic~G~Aas  163 (275)
T KOG0840|consen   94 IVFLGQPIDDDV---------ANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIK-PDVSTICVGLAAS  163 (275)
T ss_pred             eeeeCCcCcHHH---------HHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhhhHHHHHHhhC-CCceeeehhhHHh
Confidence            456777887743         346788887777777779999999999999999999999999885 2333444333445


Q ss_pred             hhhhHHhhcc-CeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHHHH
Q 005581          223 EKEYYLACAC-EELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNI  301 (690)
Q Consensus       223 s~gY~LAsaa-D~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~  301 (690)
                      .++++|+..+ -+.|+-|.+.++++.+...                         ++..-  +++.     .-.+-+..+
T Consensus       164 ~aalLLaaG~KG~R~alPnsriMIhQP~gg-------------------------a~Gqa--~Di~-----i~akE~~~~  211 (275)
T KOG0840|consen  164 MAALLLAAGAKGKRYALPNSRIMIHQPSGG-------------------------AGGQA--TDIV-----IQAKELMRI  211 (275)
T ss_pred             HHHHHHhcCCCcceeecCCceeEEeccCCC-------------------------cCccc--hHHH-----HHHHHHHHH
Confidence            5666666655 4799999999999977221                         00110  1111     112234566


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHhcC-cccHHHHHhcCCeeEecc
Q 005581          302 YGNWLDKVSSTKGKRKEDIERFINDG-VYKVERLKEEGFITNVLY  345 (690)
Q Consensus       302 ~~~f~~~Va~~Rg~~~~~v~~~~~~~-v~~a~eAl~~GLID~i~~  345 (690)
                      ++++.+.+++..|.+.+++.+-++.. -++++||+++||||+|..
T Consensus       212 k~~l~~i~a~~Tgq~~e~i~~d~dRd~fmsa~EA~eyGliD~v~~  256 (275)
T KOG0840|consen  212 KEYLNEIYAKHTGQPLEVIEKDMDRDRFMSAEEAKEYGLIDKVID  256 (275)
T ss_pred             HHHHHHHHHHhcCCcHHHHHhhhcccccCCHHHHHHhcchhhhhc
Confidence            77788888999999999999988874 569999999999999854

>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]

Probab=98.83  E-value=5.8e-08  Score=99.07  Aligned_cols=171  Identities=14%  Similarity=0.120  Sum_probs=118.6

Q ss_pred             CCcEEEEEee-cccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccC----CCcchh------------hhh
Q 005581          387 GDQIAVIRAS-GSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDS----PGGDAL------------ASD  449 (690)
Q Consensus       387 ~~~IAvI~i~-G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinS----pGG~~~------------as~  449 (690)
                      .+++..|-++ .|-.      -++.+..+..++.++|+.+.+|+++.-+++..+.    .|.+..            .++
T Consensus        14 ~~g~~~I~~~~~Pkk------~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~~~~   87 (266)
T KOG0016|consen   14 ENGPFFIALNIRPKK------KNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDANEESD   87 (266)
T ss_pred             cCCcEEEEecCCCcc------cccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCcccccch
Confidence            3566666665 4332      2455667888999999999999999777776642    333221            122


Q ss_pred             HHHHHHH-------Hh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeec
Q 005581          450 LMWREIR-------LL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIIS  521 (690)
Q Consensus       450 ~i~~~I~-------~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~  521 (690)
                      .....+.       .+ .-+||+||.++|.|.|-|..|.--||++||++.+.            |.-.+.++|..++..+
T Consensus        88 ~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~------------F~TPfa~lGq~PEG~S  155 (266)
T KOG0016|consen   88 KASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAW------------FQTPFAKLGQSPEGCS  155 (266)
T ss_pred             hhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceE------------EeccchhcCCCCCcce
Confidence            2322222       22 34999999999999999999999999999999887            3344567777666665


Q ss_pred             ccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHH-HHHHHhcCCcccHHHHHHcCCcccccChH---
Q 005581          522 RGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVD-KMEEYAQGRVWTGNDAASRGLVDALGGFS---  597 (690)
Q Consensus       522 ~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~-~v~~l~~Grv~tg~eA~e~GLVD~ig~~~---  597 (690)
                      +-.+..++                                    ..+ +-+.++-|+.++++||.+.|||+++...+   
T Consensus       156 s~t~p~im------------------------------------G~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~  199 (266)
T KOG0016|consen  156 SVTLPKIM------------------------------------GSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFN  199 (266)
T ss_pred             eeeehHhh------------------------------------chhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHH
Confidence            54333222                                    222 44556779999999999999999998754   


Q ss_pred             -HHHHHHHHHcCCCC
Q 005581          598 -RAVAIAKQKANIPE  611 (690)
Q Consensus       598 -~ai~~a~~~a~l~~  611 (690)
                       +++..+++++.+++
T Consensus       200 ~~v~~~ikq~s~l~p  214 (266)
T KOG0016|consen  200 EEVLKKIKQYSKLSP  214 (266)
T ss_pred             HHHHHHHHHHhcCCH
Confidence             55666677777654

>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

Probab=98.59  E-value=2.1e-07  Score=92.37  Aligned_cols=162  Identities=16%  Similarity=0.205  Sum_probs=114.0

Q ss_pred             CeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCC-------C---------CH-H------
Q 005581          139 GSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLS-------C---------GW-G------  195 (690)
Q Consensus       139 ~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~G-------g---------~~-~------  195 (690)
                      +.|+.|.++.|=+...    ....+..++.+++..|..|++|..|+|..++-|       |         ++ .      
T Consensus        27 ~giakItinRPevrNA----frP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~~r  102 (282)
T COG0447          27 DGIAKITINRPEVRNA----FRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIPR  102 (282)
T ss_pred             CceEEEEecChhhhcc----CCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCCccCcc
Confidence            5799999998854432    345789999999999999999999999866321       1         11 1      


Q ss_pred             -HHHHHHHHHHHHhhcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeecc
Q 005581          196 -KVEEIRRHVVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGK  273 (690)
Q Consensus       196 -~~~eI~~aI~~~r~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~  273 (690)
                       ...++.+.|+   ..+|||||.+.+ +..+|-.|-..||.-+++..+.+|-.|.-.                     |.
T Consensus       103 LnvLdlQrlIR---~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~V---------------------GS  158 (282)
T COG0447         103 LNVLDLQRLIR---TMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKV---------------------GS  158 (282)
T ss_pred             cchhhHHHHHH---hCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCc---------------------cc
Confidence             1133444444   568999999994 667899999999999999999999998822                     22


Q ss_pred             ccc-cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHH
Q 005581          274 YKS-AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVIS  351 (690)
Q Consensus       274 yKs-a~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~  351 (690)
                      |.. .|..|                       +...|.+.      ..++ ++-++.|+++||++.|||+.+...+++.+
T Consensus       159 FD~G~Gs~y-----------------------lar~VGqK------kArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~  209 (282)
T COG0447         159 FDGGYGSSY-----------------------LARIVGQK------KAREIWFLCRQYDAEEALDMGLVNTVVPHADLEK  209 (282)
T ss_pred             ccCcccHHH-----------------------HHHHhhhh------hhHHhhhhhhhccHHHHHhcCceeeeccHHHHHH
Confidence            211 01111                       12223332      2334 45689999999999999999999888776


Q ss_pred             HHHHHh
Q 005581          352 MLKERL  357 (690)
Q Consensus       352 ~l~~~~  357 (690)
                      +..+++
T Consensus       210 e~v~W~  215 (282)
T COG0447         210 ETVQWA  215 (282)
T ss_pred             HHHHHH
Confidence            544443

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=98.43  E-value=0.00014  Score=84.02  Aligned_cols=156  Identities=11%  Similarity=0.011  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHhCCCceEEEEEccCCCcchhh-------hhHHHHHHHHh-cCCCCEEEEECccccHHHHHHHH----
Q 005581          414 IGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLL-SESKPVIASMSDVAASGGYYMAM----  481 (690)
Q Consensus       414 ~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~a-------s~~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~----  481 (690)
                      .++...+.++-+.+ -++ -||.-+|+||-.+-.       ...+.+.+..+ ....|.|+.+-|.|.|||||..|    
T Consensus       386 ~a~Kaarfi~lc~~-~~i-Plv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~aM~g~~~  463 (569)
T PLN02820        386 SALKGAHFIELCAQ-RGI-PLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYGMCGRAY  463 (569)
T ss_pred             HHHHHHHHHHHHHh-cCC-CEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHHhcCcCC
Confidence            45666666665543 344 366668999865421       11223334333 34899999999999999999998    


Q ss_pred             hcCeEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 005581          482 AAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAF  561 (690)
Q Consensus       482 aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~  561 (690)
                      .+|++||-|++.+|.+|.   -....-++ +          .+..... ....+..+++++.+++.+.+.|+.       
T Consensus       464 ~~d~~~awp~A~i~vmg~---e~aa~il~-~----------~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------  521 (569)
T PLN02820        464 SPNFLFMWPNARIGVMGG---AQAAGVLA-Q----------IERENKK-RQGIQWSKEEEEAFKAKTVEAYER-------  521 (569)
T ss_pred             CCCEEEECCCCeEEecCH---HHHHHHHH-H----------HHhhhhh-hccccCCccHHHHHHHHHHHHHHH-------
Confidence            679999999998776552   11111111 0          0000000 011223334444555555444432       


Q ss_pred             hcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHHHHcCC
Q 005581          562 SRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKANI  609 (690)
Q Consensus       562 ~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~~~a~l  609 (690)
                                      .-++-.|-+.|+||+|-.+.+......+...+
T Consensus       522 ----------------~~~p~~aa~~~~vD~VIdP~dTR~~l~~~l~~  553 (569)
T PLN02820        522 ----------------EANPYYSTARLWDDGVIDPADTRRVLGLCLSA  553 (569)
T ss_pred             ----------------hCCHHHHHHcCCcCcccCHHHHHHHHHHHHHH
Confidence                            22566788999999999988776665554443

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=98.35  E-value=0.00043  Score=79.40  Aligned_cols=86  Identities=14%  Similarity=0.108  Sum_probs=59.1

Q ss_pred             cchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhh-------HHHHHHHHh-cCCCCEEEEECccccHHHHHHHHh
Q 005581          411 SGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASD-------LMWREIRLL-SESKPVIASMSDVAASGGYYMAMA  482 (690)
Q Consensus       411 ~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~-------~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~a  482 (690)
                      +....+...+.++.+.+. ++ -||.-+||||-..-...       .+.+.+..+ ....|.|+.+.|.++||||+..++
T Consensus       332 ~~~~~~K~~r~i~~a~~~-~l-PlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~am~~  409 (512)
T TIGR01117       332 DIDSSDKIARFIRFCDAF-NI-PIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYLAMCS  409 (512)
T ss_pred             CHHHHHHHHHHHHHHHHc-CC-CEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHHHhcc
Confidence            345677888888877653 33 57777899985321111       122233333 348999999999999998777764


Q ss_pred             ----cCeEEEecCceecccc
Q 005581          483 ----AGTILAENLTLTGSIG  498 (690)
Q Consensus       483 ----aD~I~A~p~t~~GSIG  498 (690)
                          +|++||.|++.+|.+|
T Consensus       410 ~~~~~d~~~a~p~a~~~v~~  429 (512)
T TIGR01117       410 KHLGADQVYAWPTAEIAVMG  429 (512)
T ss_pred             ccCCCCEEEEcCCCeEeecC
Confidence                9999999998877655

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=98.35  E-value=2.1e-06  Score=91.22  Aligned_cols=152  Identities=20%  Similarity=0.193  Sum_probs=110.9

Q ss_pred             CCCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-----CCCcchhhhhHH---------
Q 005581          386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALASDLM---------  451 (690)
Q Consensus       386 ~~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-----SpGG~~~as~~i---------  451 (690)
                      +++...+|.+|.|-.      .|+.+--|...+...|.+.+.++.++.|||..+     |.||++.+...+         
T Consensus        44 ~~~~~r~itLNRPKa------LNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~  117 (401)
T KOG1684|consen   44 GKGCARVITLNRPKA------LNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEV  117 (401)
T ss_pred             cCCceeEEEecCchh------hccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHH
Confidence            467899999999876      355566677888889999999999999999876     478886542221         


Q ss_pred             -------HHHHHHhcC-CCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccc---hHHHHHHcCCc
Q 005581          452 -------WREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFN---LGKLYEKIGFN  516 (690)
Q Consensus       452 -------~~~I~~l~~-~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~---~~~l~~klGi~  516 (690)
                             |..+..+.. .||.||.|+|..+|||..|+..+-++||++.|++..    ||++|....   +..+..++|. 
T Consensus       118 ~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg~lg~-  196 (401)
T KOG1684|consen  118 KKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPGYLGL-  196 (401)
T ss_pred             HHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCccHHHH-
Confidence                   111111211 799999999999999999999999999999998763    776665432   2222111111 


Q ss_pred             eeeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccCh
Q 005581          517 KEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGF  596 (690)
Q Consensus       517 ~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~  596 (690)
                                 .                                           .-++|++++|.+|+..||....+.-
T Consensus       197 -----------Y-------------------------------------------LgLTG~rl~GaD~~~~GlATHyv~S  222 (401)
T KOG1684|consen  197 -----------Y-------------------------------------------LGLTGQRLSGADALRCGLATHYVPS  222 (401)
T ss_pred             -----------h-------------------------------------------hhhccceecchHHHHhcchhhccch
Confidence                       0                                           1167999999999999999988765


Q ss_pred             HH
Q 005581          597 SR  598 (690)
Q Consensus       597 ~~  598 (690)
                      +.
T Consensus       223 ~~  224 (401)
T KOG1684|consen  223 EK  224 (401)
T ss_pred             hh
Confidence            53

>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=98.31  E-value=1.6e-06  Score=86.18  Aligned_cols=158  Identities=16%  Similarity=0.180  Sum_probs=113.0

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCC-----CCH--------HHH----HH
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLS-----CGW--------GKV----EE  199 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~G-----g~~--------~~~----~e  199 (690)
                      ++..|.+|.++.+-...+-    +...+.++.+.++....|++++.|+|+--.||     .++        ..+    ..
T Consensus        37 ~~~GItvl~mNRpa~kNsl----~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~  112 (291)
T KOG1679|consen   37 KDEGITILNMNRPAKKNSL----GRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNG  112 (291)
T ss_pred             CCCCeEEEecCChhhhccH----HHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHHHHHH
Confidence            3456777777777544321    22457789999999999999999999988776     122        111    33


Q ss_pred             HHHHHHHHhhcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccC
Q 005581          200 IRRHVVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG  278 (690)
Q Consensus       200 I~~aI~~~r~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~  278 (690)
                      ||..+.++.+...||||.+++ +..+|.-+|.+||..++..++.+|++..            |++|-|         .+|
T Consensus       113 lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET------------~laiiP---------GaG  171 (291)
T KOG1679|consen  113 LRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVET------------KLAIIP---------GAG  171 (291)
T ss_pred             HHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhcccccccc------------ceeeec---------CCC
Confidence            666666666678999999995 5588999999999999999999999877            777776         444


Q ss_pred             CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchh
Q 005581          279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDD  347 (690)
Q Consensus       279 ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~d  347 (690)
                      .+-.           +                 .|-+...-.++ +++++++++.||.+.|||+.+....
T Consensus       172 GtQR-----------L-----------------pR~vg~alaKELIftarvl~g~eA~~lGlVnhvv~qn  213 (291)
T KOG1679|consen  172 GTQR-----------L-----------------PRIVGVALAKELIFTARVLNGAEAAKLGLVNHVVEQN  213 (291)
T ss_pred             ccch-----------h-----------------HHHHhHHHHHhHhhhheeccchhHHhcchHHHHHhcC
Confidence            4321           1                 12122222333 5678999999999999999886443

>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=98.10  E-value=4e-06  Score=84.07  Aligned_cols=165  Identities=19%  Similarity=0.259  Sum_probs=109.1

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC-------------------CCC-CHH-
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-------------------LSC-GWG-  195 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s-------------------~Gg-~~~-  195 (690)
                      .+..|..+.|+.|-.-..    .+.....++-+.++....||++++|+|...+                   +.| +++ 
T Consensus        28 ~~~~V~hv~lnRPsk~Na----l~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~~~dd~aR  103 (292)
T KOG1681|consen   28 AQPFVYHVQLNRPSKLNA----LNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQPEGDDVAR  103 (292)
T ss_pred             CCCeEEEEEecCcchhhh----hhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhccccccchHhh
Confidence            466888899988732211    1123356899999999999999999995443                   111 111 


Q ss_pred             HHHHHHHHHHHHhh-------cCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeE
Q 005581          196 KVEEIRRHVVDFKK-------SGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQ  267 (690)
Q Consensus       196 ~~~eI~~aI~~~r~-------sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~  267 (690)
                      ..+.+++.|+.+++       ..||||+.++ .|-++|.-|.++||..|+...+.+....|            .+|+-.+
T Consensus       104 ~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEV------------DvglaAD  171 (292)
T KOG1681|consen  104 KGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEV------------DVGLAAD  171 (292)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeee------------eeehhhc
Confidence            12446666666543       5899999999 57788999999999999999999988766            4444332


Q ss_pred             EEeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEe-cc
Q 005581          268 VQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNV-LY  345 (690)
Q Consensus       268 ~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i-~~  345 (690)
                      +   |       ++          +.+...+.+                -..+++ .++++-|.+.||++.|||-++ .+
T Consensus       172 v---G-------TL----------~RlpkvVGn----------------~s~~~elafTar~f~a~EAl~~GLvSrvf~d  215 (292)
T KOG1681|consen  172 V---G-------TL----------NRLPKVVGN----------------QSLARELAFTARKFSADEALDSGLVSRVFPD  215 (292)
T ss_pred             h---h-------hH----------hhhhHHhcc----------------hHHHHHHHhhhhhcchhhhhhcCcchhhcCC
Confidence            1   1       00          111222211                011222 246788999999999999999 55


Q ss_pred             hhHHHHHH
Q 005581          346 DDEVISML  353 (690)
Q Consensus       346 ~de~~~~l  353 (690)
                      .+++++..
T Consensus       216 k~~ll~~~  223 (292)
T KOG1681|consen  216 KEELLNGA  223 (292)
T ss_pred             HHHHHhhh
Confidence            66666543

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=98.04  E-value=0.0012  Score=75.58  Aligned_cols=268  Identities=16%  Similarity=0.106  Sum_probs=145.0

Q ss_pred             CCHHHHHHHHHHhhcCCCceEEEEEcCCCCCC---------HHHHHHHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhc
Q 005581          162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCG---------WGKVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACA  231 (690)
Q Consensus       162 ~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~---------~~~~~eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsa  231 (690)
                      .....+.++++.|.+. ++-- |.-++|.|+.         +.+.-.+...+.+++. +.|+|+++. .|..++-|++..
T Consensus        76 ~~~~Ki~ra~~~A~~~-~~P~-v~l~dsgGa~~r~~eg~~~l~~~g~i~~~~~~~~~-~iP~I~vv~G~~~Gg~A~~~~~  152 (493)
T PF01039_consen   76 VHGEKIARAIELALEN-GLPL-VYLVDSGGAFLRMQEGVESLMGMGRIFRAIARLSG-GIPQISVVTGPCTGGGAYLAAL  152 (493)
T ss_dssp             HHHHHHHHHHHHHHHH-TEEE-EEEEEESSBCGGGGGHHHHHHHHHHHHHHHHHHHT-TS-EEEEEESEEEGGGGHHHHH
T ss_pred             ccceeeehHHHHHHHc-CCCc-EEeccccccccccchhhhhhhhhHHHHHHHHHHhc-CCCeEEEEccccccchhhcccc
Confidence            4567789999999876 3443 3446676661         1233456677777776 999999997 566667777888


Q ss_pred             cCeeEecCC-CeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005581          232 CEELYAPPS-AYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVS  310 (690)
Q Consensus       232 aD~I~a~p~-~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va  310 (690)
                      ||.++|.+. +.+++.|...-                           +..+.+.                         
T Consensus       153 ~d~~i~~~~~a~i~l~GP~vv---------------------------~~~~Ge~-------------------------  180 (493)
T PF01039_consen  153 SDFVIMVKGTARIFLAGPRVV---------------------------ESATGEE-------------------------  180 (493)
T ss_dssp             SSEEEEETTTCEEESSTHHHH---------------------------HHHHSSC-------------------------
T ss_pred             cCccccCccceEEEecccccc---------------------------ccccCcc-------------------------
Confidence            999999998 99998887211                           0000011                         


Q ss_pred             HhcCCCHHHHHHHHhcCcccH-HHHHhcCCeeEecch-hHHHHHHHHHhCCCC---CC---CCCcccc---c-------c
Q 005581          311 STKGKRKEDIERFINDGVYKV-ERLKEEGFITNVLYD-DEVISMLKERLGVQK---DK---NLPMVDY---R-------K  372 (690)
Q Consensus       311 ~~Rg~~~~~v~~~~~~~v~~a-~eAl~~GLID~i~~~-de~~~~l~~~~g~~~---~~---~~~~v~~---~-------~  372 (690)
                          .+.+++     +   .+ .-+.+.|.+|.+... +++++.+++.+..-+   ..   ..+.+.-   .       .
T Consensus       181 ----~~~~~l-----g---G~~~h~~~sG~~d~v~~de~~a~~~ir~~ls~lp~~~~~~~~~~p~~~~~d~~~~~~~l~~  248 (493)
T PF01039_consen  181 ----VDSEEL-----G---GADVHAAKSGVVDYVVDDEEDALAQIRRLLSYLPSPASNNFEDPPRVPTSDPPDRDEELDS  248 (493)
T ss_dssp             ----TSHHHH-----H---BHHHHHHTSSSSSEEESSHHHHHHHHHHHHHTS-SSTSSTTSS--BSSSSSGSSSCGGGHG
T ss_pred             ----ccchhh-----h---hhhhhcccCCCceEEEechHHHHHHHHHhhcccccccccccCCCcccccCCCccccccccc
Confidence                111111     0   01 124678999999754 466777777664322   11   1111110   0       0


Q ss_pred             cccc---------------ccc----cc-ccCCCCCcEEEEEeeccccc----CCCCCCCCCcchHHHHHHHHHHHHHhC
Q 005581          373 YSGV---------------RRW----TL-GLTGGGDQIAVIRASGSISR----VRSPLSLSSSGIIGEQLIEKIRKVRES  428 (690)
Q Consensus       373 y~~~---------------~~~----~~-~~~~~~~~IAvI~i~G~I~~----~~~~~~~~~~~~~~~~l~~~l~~a~~D  428 (690)
                      ....               ...    .. +..+..=-++..+++|.-+.    .............++...+.++-+.. 
T Consensus       249 ~~P~~~~~~yD~r~ii~~i~D~~~f~E~~~~~g~~~vtg~arl~G~pVGiian~~~~~~G~~~~~~a~K~arfi~lcd~-  327 (493)
T PF01039_consen  249 IIPDDRRRPYDMRDIIARIVDDGSFFELKPGYGKNIVTGFARLGGRPVGIIANNPRQRAGALDPDGARKAARFIRLCDA-  327 (493)
T ss_dssp             CS-SSTTS---HHHHHHHHSGGGBEEEESTTSSTTEEEEEEEETTEEEEEEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-
T ss_pred             ccccccCCCCCcceeeEecccCCCceeccccccCCeEEeeeeeCCcceEEEEeccccccccCChHHHHHHHHHHHHHHh-
Confidence            0000               000    00 01111112455555553321    10000011122345666666666655 


Q ss_pred             CCceEEEEEccCCCcchhhh-------hHHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhc----CeEEEecCceecc
Q 005581          429 KRYKAAIIRIDSPGGDALAS-------DLMWREIRLL-SESKPVIASMSDVAASGGYYMAMAA----GTILAENLTLTGS  496 (690)
Q Consensus       429 ~~VkaVVLrinSpGG~~~as-------~~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aa----D~I~A~p~t~~GS  496 (690)
                      -++ -||.-+|+||=.+-..       ..+.+.+..+ ....|+|+.+-+-+.||||+..++.    |.++|-|++.+|.
T Consensus       328 ~~i-Plv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~v  406 (493)
T PF01039_consen  328 FNI-PLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIGV  406 (493)
T ss_dssp             TT---EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEES
T ss_pred             hCC-ceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceeee
Confidence            355 5677779887543211       1122333333 2289999999999999999988888    9999999999886


Q ss_pred             cc
Q 005581          497 IG  498 (690)
Q Consensus       497 IG  498 (690)
                      ++
T Consensus       407 m~  408 (493)
T PF01039_consen  407 MG  408 (493)
T ss_dssp             S-
T ss_pred             cC
Confidence            65

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit

Probab=97.96  E-value=0.00019  Score=75.62  Aligned_cols=103  Identities=17%  Similarity=0.180  Sum_probs=74.1

Q ss_pred             CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCc---eEEEEEccCCCcchhh-------hhHHHHHHHH
Q 005581          388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRY---KAAIIRIDSPGGDALA-------SDLMWREIRL  457 (690)
Q Consensus       388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~V---kaVVLrinSpGG~~~a-------s~~i~~~I~~  457 (690)
                      ..|+|+--+++...      .+.+....+.+.+.++.|.+|...   -.+|+-++|+|+...-       .-.++..+..
T Consensus        59 r~v~v~a~D~t~~G------GS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGaRlqEg~~~L~~~a~i~~~~~~  132 (274)
T TIGR03133        59 KPVVVAAQEGRFQG------GSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILD  132 (274)
T ss_pred             EEEEEEEECCCccC------cCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCcChhhhHHHHHHHHHHHHHHHH
Confidence            34666666666553      233456778999999999874432   2588888998876421       1234555555


Q ss_pred             hcCCCCEEEEECcc--ccHHHHHHHHhcCeEEEecCceecc
Q 005581          458 LSESKPVIASMSDV--AASGGYYMAMAAGTILAENLTLTGS  496 (690)
Q Consensus       458 l~~~KPVVa~v~g~--AaSGGy~iA~aaD~I~A~p~t~~GS  496 (690)
                      ++...|+|+.+.|.  |+||+.|+++.||+++|++.+.+|.
T Consensus       133 ls~~vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~  173 (274)
T TIGR03133       133 ARAAVPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGL  173 (274)
T ss_pred             HhCCCCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEec
Confidence            55569999999999  8999999999999999999876554

Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.

>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=97.87  E-value=0.00012  Score=72.50  Aligned_cols=162  Identities=14%  Similarity=0.116  Sum_probs=115.0

Q ss_pred             CeEEEEEEceeeccccccccCCCCC---HHHHHHHHHHhhcCCCceEEEEEcCCCC--------------CCHHHH---H
Q 005581          139 GSVLTMKLRGQIADQLKSRFSSGLS---LPQICENFVKAAYDPRIVGIYLHIEPLS--------------CGWGKV---E  198 (690)
Q Consensus       139 ~~VlvI~l~G~I~~~~~~~~~~~~s---~~~i~~~L~~Aa~D~~IkgVvL~i~s~G--------------g~~~~~---~  198 (690)
                      +.|-.|.|+.+=.-       +++|   +..+.+.|.+-+++.+++.|+|.-+++-              |.--++   +
T Consensus        40 ~gvR~i~l~npKk~-------NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haevFq  112 (287)
T KOG1682|consen   40 NGVREITLNNPKKL-------NTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEVFQ  112 (287)
T ss_pred             cceeeeeecCcccc-------chhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCccchHHHHHHH
Confidence            56667777765222       2244   3456667777777788999999766531              111111   3


Q ss_pred             HHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeecccccc
Q 005581          199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA  277 (690)
Q Consensus       199 eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa  277 (690)
                      ...+.+..+|+.+.||+|-++ .++-+|..|-..||.+++...+.|...|.            ++|+-.         | 
T Consensus       113 tc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~------------~vGlFC---------S-  170 (287)
T KOG1682|consen  113 TCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGA------------GVGLFC---------S-  170 (287)
T ss_pred             HHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCC------------ceeeEe---------c-
Confidence            456677778888999999999 46677999999999999999999999888            444422         1 


Q ss_pred             CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH-HHHHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581          278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDI-ERFINDGVYKVERLKEEGFITNVLYDDEVISMLKER  356 (690)
Q Consensus       278 ~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v-~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~  356 (690)
                       .|                           .||-.|.+++... .-+++|.+.+++||+-.||+.++...+|+..++.+.
T Consensus       171 -TP---------------------------GvAlaRavpRkva~~ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~i  222 (287)
T KOG1682|consen  171 -TP---------------------------GVALARAVPRKVAAYMLMTGLPITGEEALISGLVSKVVPAEELDKEIEEI  222 (287)
T ss_pred             -Cc---------------------------chhHhhhcchhHHHHHHHhCCCCchHHHHHhhhhhhcCCHHHHHHHHHHH
Confidence             01                           2444566555433 345789999999999999999999999988776655


Q ss_pred             h
Q 005581          357 L  357 (690)
Q Consensus       357 ~  357 (690)
                      .
T Consensus       223 ~  223 (287)
T KOG1682|consen  223 T  223 (287)
T ss_pred             H
Confidence            4

>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]

Probab=97.66  E-value=0.0007  Score=69.73  Aligned_cols=146  Identities=13%  Similarity=0.114  Sum_probs=98.4

Q ss_pred             CCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH------------HHH-------HHHHHHHhhcCCeEEEEe
Q 005581          162 LSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV------------EEI-------RRHVVDFKKSGKFIIGYV  218 (690)
Q Consensus       162 ~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~------------~eI-------~~aI~~~r~sgKpVvAy~  218 (690)
                      -.+.++.++|..|.+|+++.-+++.-++    -|.++...            .+.       .-.+..|-+..||+||.+
T Consensus        35 e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~v  114 (266)
T KOG0016|consen   35 EDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDANEESDKASKFVKNVSCFVNTFINFPKPLVALV  114 (266)
T ss_pred             HHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCcccccchhhHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            3477899999999999998777775543    12222111            112       124555656789999999


Q ss_pred             cC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHH
Q 005581          219 PV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTAL  297 (690)
Q Consensus       219 ~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~  297 (690)
                      ++ +-+-|-.|.-.||.+|++..+.+--.-            .++|..|+.-         ..++.              
T Consensus       115 NGPAIGlgasil~lcD~V~A~Dka~F~TPf------------a~lGq~PEG~---------Ss~t~--------------  159 (266)
T KOG0016|consen  115 NGPAIGLGASILPLCDYVWASDKAWFQTPF------------AKLGQSPEGC---------SSVTL--------------  159 (266)
T ss_pred             cCCccchhhHHhhhhheEEeccceEEeccc------------hhcCCCCCcc---------eeeee--------------
Confidence            95 555577788889999999888875552            3889888543         33331              


Q ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581          298 LDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKER  356 (690)
Q Consensus       298 ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~  356 (690)
                                    .+.+..+...+ ++-+..++++||.+.|||+++....++-+.+.++
T Consensus       160 --------------p~imG~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~  205 (266)
T KOG0016|consen  160 --------------PKIMGSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKK  205 (266)
T ss_pred             --------------hHhhchhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHH
Confidence                          11122233333 4568999999999999999998777666555443

>PRK07189 malonate decarboxylase subunit beta; Reviewed

Probab=97.53  E-value=0.00071  Score=72.12  Aligned_cols=103  Identities=18%  Similarity=0.169  Sum_probs=74.8

Q ss_pred             cEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCC---ceEEEEEccCCCcchh-------hhhHHHHHHHHh
Q 005581          389 QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKR---YKAAIIRIDSPGGDAL-------ASDLMWREIRLL  458 (690)
Q Consensus       389 ~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~---VkaVVLrinSpGG~~~-------as~~i~~~I~~l  458 (690)
                      .|+|+--+++...      .+.+....+.+...++.|.++..   ...+|+-++|+|+...       +.-.++..+..+
T Consensus        69 ~v~v~a~D~tf~G------GS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGaRlqEg~~~L~~~a~i~~~~~~l  142 (301)
T PRK07189         69 PVVVAAQEGRFMG------GSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDL  142 (301)
T ss_pred             EEEEEEECCCccC------cCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCcCccchHHHHHHHHHHHHHHHHH
Confidence            4555555555542      33445678899999999887651   2367788899887642       122345555556


Q ss_pred             cCCCCEEEEECcc--ccHHHHHHHHhcCeEEEecCceeccc
Q 005581          459 SESKPVIASMSDV--AASGGYYMAMAAGTILAENLTLTGSI  497 (690)
Q Consensus       459 ~~~KPVVa~v~g~--AaSGGy~iA~aaD~I~A~p~t~~GSI  497 (690)
                      +...|+|+.+.|.  |++|+-|++++||+++|++.+.+|.-
T Consensus       143 s~~VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igla  183 (301)
T PRK07189        143 RAAVPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLS  183 (301)
T ss_pred             hCCCCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEecc
Confidence            5569999999999  99999999999999999998766543

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=97.42  E-value=0.00074  Score=70.69  Aligned_cols=85  Identities=14%  Similarity=0.144  Sum_probs=63.1

Q ss_pred             chHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhh-------hhHHHHHHHHhc-CCCCEEEEECccccHHHHHHHHhc
Q 005581          412 GIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLLS-ESKPVIASMSDVAASGGYYMAMAA  483 (690)
Q Consensus       412 ~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~a-------s~~i~~~I~~l~-~~KPVVa~v~g~AaSGGy~iA~aa  483 (690)
                      ...++...+.++.+.+.. + -||--+||||.....       ...+.+.+..+. ...|+|+.+-|.|.|||+|..+.|
T Consensus        81 ~~g~rKa~R~~~lA~~~~-l-PvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~~~gGgA~a~~~~  158 (256)
T PRK12319         81 PEGYRKALRLMKQAEKFG-R-PVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVA  158 (256)
T ss_pred             HHHHHHHHHHHHHHHHcC-C-CEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCcCcHHHHHhhcC
Confidence            346777777777776543 2 477778999986421       233555555543 389999999999999999999999


Q ss_pred             CeEEEecCceecccc
Q 005581          484 GTILAENLTLTGSIG  498 (690)
Q Consensus       484 D~I~A~p~t~~GSIG  498 (690)
                      |+++|.|++.++.++
T Consensus       159 D~v~m~~~a~~~v~~  173 (256)
T PRK12319        159 DQVWMLENTMYAVLS  173 (256)
T ss_pred             CEEEEecCceEEEcC
Confidence            999999998765443

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=97.34  E-value=0.0013  Score=70.68  Aligned_cols=83  Identities=16%  Similarity=0.141  Sum_probs=60.9

Q ss_pred             chHHHHHHHHHHHHHhCCCceEEEEEccCCCcchh-------hhhHHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhc
Q 005581          412 GIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDAL-------ASDLMWREIRLL-SESKPVIASMSDVAASGGYYMAMAA  483 (690)
Q Consensus       412 ~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~-------as~~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aa  483 (690)
                      ...++...+.++.+.+..  .-||--+|+||...-       .+..|.+.+..+ ....|+|+.+-|-|.|||.|..+.|
T Consensus       137 p~g~rKa~Rlm~lA~~f~--lPIItlvDTpGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVViGeggsGGAlal~~a  214 (322)
T CHL00198        137 PGGYRKALRLMKHANKFG--LPILTFIDTPGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGIG  214 (322)
T ss_pred             HHHHHHHHHHHHHHHHcC--CCEEEEEeCCCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCcccHHHHHhhhcC
Confidence            446677777777766543  357777899998642       123455555443 3489999999999999999988889


Q ss_pred             CeEEEecCceecc
Q 005581          484 GTILAENLTLTGS  496 (690)
Q Consensus       484 D~I~A~p~t~~GS  496 (690)
                      |+++|.+++.++-
T Consensus       215 D~V~m~e~a~~sV  227 (322)
T CHL00198        215 DSIMMLEYAVYTV  227 (322)
T ss_pred             CeEEEeCCeEEEe
Confidence            9999999987543

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=97.34  E-value=0.0027  Score=69.94  Aligned_cols=85  Identities=15%  Similarity=0.129  Sum_probs=61.4

Q ss_pred             chHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhh-------hhHHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhc
Q 005581          412 GIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLL-SESKPVIASMSDVAASGGYYMAMAA  483 (690)
Q Consensus       412 ~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~a-------s~~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aa  483 (690)
                      ...++...+.++.+.+..  .-||--+|+||.....       ++.|.+.+..+ ...+|+|+.|-|-+.|||.+..++|
T Consensus       204 peGyRKAlR~mklAekf~--lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVViGeGgSGGAlalg~a  281 (431)
T PLN03230        204 PNGYRKALRFMRHAEKFG--FPILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVIGEGGSGGALAIGCG  281 (431)
T ss_pred             HHHHHHHHHHHHHHHHcC--CCEEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHHhhcC
Confidence            356677777777766543  3577789999975421       34455666555 3479999999999988888877889


Q ss_pred             CeEEEecCceecccc
Q 005581          484 GTILAENLTLTGSIG  498 (690)
Q Consensus       484 D~I~A~p~t~~GSIG  498 (690)
                      |+++|.+++.++.++
T Consensus       282 D~VlMle~A~ysVis  296 (431)
T PLN03230        282 NRMLMMENAVYYVAS  296 (431)
T ss_pred             CEEEEecCCEEEecC
Confidence            999999998755433

>PRK05654 acetyl-CoA carboxylase subunit beta; Validated

Probab=97.32  E-value=0.0054  Score=65.46  Aligned_cols=88  Identities=24%  Similarity=0.327  Sum_probs=61.5

Q ss_pred             CCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhh-------hhHHHHHHHHhc-CCCCEEEEECccccHHHHHH-
Q 005581          409 SSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLLS-ESKPVIASMSDVAASGGYYM-  479 (690)
Q Consensus       409 ~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~a-------s~~i~~~I~~l~-~~KPVVa~v~g~AaSGGy~i-  479 (690)
                      +.+....+.+.+.++.+.+. ++- ||.-.+|+|.....       .-.+...+..+. ...|.|+.+.|.++||+.+. 
T Consensus       136 S~g~~~~eKi~r~~e~A~~~-~lP-lV~l~dsgGarmqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~  213 (292)
T PRK05654        136 SMGSVVGEKIVRAVERAIEE-KCP-LVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVSASF  213 (292)
T ss_pred             CccHHHHHHHHHHHHHHHHc-CCC-EEEEEcCCCcchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHHHHHH
Confidence            34456788999988888765 454 55556888764311       112333454453 48999999999999997665 


Q ss_pred             HHhcCeEEEecCceecccc
Q 005581          480 AMAAGTILAENLTLTGSIG  498 (690)
Q Consensus       480 A~aaD~I~A~p~t~~GSIG  498 (690)
                      ++.+|+++|.|++.+|..|
T Consensus       214 a~~~D~iia~p~A~ig~aG  232 (292)
T PRK05654        214 AMLGDIIIAEPKALIGFAG  232 (292)
T ss_pred             HHcCCEEEEecCcEEEecC
Confidence            6679999999998877544

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=97.27  E-value=0.0012  Score=76.80  Aligned_cols=85  Identities=14%  Similarity=0.122  Sum_probs=63.0

Q ss_pred             chHHHHHHHHHHHHHhCCCceEEEEEccCCCcchh-------hhhHHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhc
Q 005581          412 GIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDAL-------ASDLMWREIRLL-SESKPVIASMSDVAASGGYYMAMAA  483 (690)
Q Consensus       412 ~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~-------as~~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aa  483 (690)
                      ..+++...+.++.|.+..  .-||--+|+||..+.       .+..|.+.+..+ ....|+|+.|-|-|.|||.|..++|
T Consensus       225 peGyRKAlRlmkLAekfg--LPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~a  302 (762)
T PLN03229        225 PHGYRKALRMMYYADHHG--FPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCA  302 (762)
T ss_pred             HHHHHHHHHHHHHHHHcC--CCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcC
Confidence            345677777777666543  357778999998652       234455656655 3479999999999999999999999


Q ss_pred             CeEEEecCceecccc
Q 005581          484 GTILAENLTLTGSIG  498 (690)
Q Consensus       484 D~I~A~p~t~~GSIG  498 (690)
                      |+++|.+++.++.+|
T Consensus       303 D~VlMle~A~~sVis  317 (762)
T PLN03229        303 NKLLMLENAVFYVAS  317 (762)
T ss_pred             CEEEEecCCeEEecC
Confidence            999999998755443

>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed

Probab=97.26  E-value=0.0074  Score=64.17  Aligned_cols=88  Identities=17%  Similarity=0.148  Sum_probs=61.0

Q ss_pred             CCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhh----hhH---HHHHHHHh--cCCCCEEEEECccccHHHHHH
Q 005581          409 SSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA----SDL---MWREIRLL--SESKPVIASMSDVAASGGYYM  479 (690)
Q Consensus       409 ~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~a----s~~---i~~~I~~l--~~~KPVVa~v~g~AaSGGy~i  479 (690)
                      +.+....+.+.++++.|.+.. + .+|+-.+|.|+...-    -..   +..++..+  ..+.|.|+.+.|.++||+.+.
T Consensus       148 SmG~v~geKi~ra~e~A~~~r-l-PlV~l~~SGGARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isvl~gPt~GG~aas  225 (296)
T CHL00174        148 SMGSVVGEKITRLIEYATNES-L-PLIIVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILTSPTTGGVTAS  225 (296)
T ss_pred             CcCHHHHHHHHHHHHHHHHcC-C-CEEEEECCCCccccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEcCCCchHHHHH
Confidence            344567889999998887754 3 466667787764311    112   22223332  357999999999999888887


Q ss_pred             -HHhcCeEEEecCceecccc
Q 005581          480 -AMAAGTILAENLTLTGSIG  498 (690)
Q Consensus       480 -A~aaD~I~A~p~t~~GSIG  498 (690)
                       ++.||+|+|.|++.+|.-|
T Consensus       226 ~a~l~Diiiae~~A~IgfAG  245 (296)
T CHL00174        226 FGMLGDIIIAEPNAYIAFAG  245 (296)
T ss_pred             HHHcccEEEEeCCeEEEeeC
Confidence             5569999999999876433

>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit

Probab=97.26  E-value=0.008  Score=63.94  Aligned_cols=87  Identities=24%  Similarity=0.292  Sum_probs=61.2

Q ss_pred             CcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhh-------hhHHHHHHHHhc-CCCCEEEEECccccHHHHH-HH
Q 005581          410 SSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLLS-ESKPVIASMSDVAASGGYY-MA  480 (690)
Q Consensus       410 ~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~a-------s~~i~~~I~~l~-~~KPVVa~v~g~AaSGGy~-iA  480 (690)
                      .+....+.+.+.++.+.+. ++ .||.-.+|+|.....       ...+...+..++ ...|.|+.+.|.++||+.+ .+
T Consensus       136 mg~~~geKi~r~~e~A~~~-~l-PlV~l~dSgGaRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~aas~a  213 (285)
T TIGR00515       136 MGSVVGEKFVRAIEKALED-NC-PLIIFSASGGARMQEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGVSASFA  213 (285)
T ss_pred             ccHHHHHHHHHHHHHHHHc-CC-CEEEEEcCCCcccccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHH
Confidence            3446788888888888754 44 455668888864321       112233444454 4899999999999999766 45


Q ss_pred             HhcCeEEEecCceecccc
Q 005581          481 MAAGTILAENLTLTGSIG  498 (690)
Q Consensus       481 ~aaD~I~A~p~t~~GSIG  498 (690)
                      +.+|+++|.|++.+|.-|
T Consensus       214 ~~~D~iia~p~A~ig~aG  231 (285)
T TIGR00515       214 MLGDLNIAEPKALIGFAG  231 (285)
T ss_pred             hCCCEEEEECCeEEEcCC
Confidence            799999999998877544

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=97.20  E-value=0.0018  Score=69.47  Aligned_cols=85  Identities=19%  Similarity=0.181  Sum_probs=62.2

Q ss_pred             chHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhh-------hhHHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhc
Q 005581          412 GIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLL-SESKPVIASMSDVAASGGYYMAMAA  483 (690)
Q Consensus       412 ~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~a-------s~~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aa  483 (690)
                      ...++...+.++.+.+-.  .-||--+|+||..+..       ...+.+.+..+ ....|+|+.+-|-|.|||.+....|
T Consensus       134 p~g~rKa~R~m~lA~~f~--iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGeggsGGAla~~~a  211 (316)
T TIGR00513       134 PEGYRKALRLMKMAERFK--MPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGEGGSGGALAIGVG  211 (316)
T ss_pred             HHHHHHHHHHHHHHHHcC--CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEecccccHHHhhhccC
Confidence            456777777777766543  3577789999976321       23455555544 3389999999999999999988889


Q ss_pred             CeEEEecCceecccc
Q 005581          484 GTILAENLTLTGSIG  498 (690)
Q Consensus       484 D~I~A~p~t~~GSIG  498 (690)
                      |+++|.|++.++.++
T Consensus       212 D~v~m~~~a~~sVis  226 (316)
T TIGR00513       212 DKVNMLEYSTYSVIS  226 (316)
T ss_pred             CEEEEecCceEEecC
Confidence            999999998766443

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=97.14  E-value=0.0024  Score=68.56  Aligned_cols=85  Identities=18%  Similarity=0.197  Sum_probs=62.0

Q ss_pred             chHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhh-------hhHHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhc
Q 005581          412 GIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLL-SESKPVIASMSDVAASGGYYMAMAA  483 (690)
Q Consensus       412 ~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~a-------s~~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aa  483 (690)
                      ...++...+.++.+.+- ++ -||--+|+||..+..       ...+.+.+..+ ....|+|+.+-|-|.|||.+....|
T Consensus       134 peg~rKa~R~m~lA~~f-~l-PIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiGeg~sGGAla~~~a  211 (319)
T PRK05724        134 PEGYRKALRLMKMAEKF-GL-PIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGEGGSGGALAIGVG  211 (319)
T ss_pred             HHHHHHHHHHHHHHHHc-CC-CEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCccHHHHHHHhcc
Confidence            34567777777666554 33 577778999976421       23455555554 3489999999999999999988899


Q ss_pred             CeEEEecCceecccc
Q 005581          484 GTILAENLTLTGSIG  498 (690)
Q Consensus       484 D~I~A~p~t~~GSIG  498 (690)
                      |+++|.|++.++.++
T Consensus       212 D~v~m~~~A~~svis  226 (319)
T PRK05724        212 DRVLMLEYSTYSVIS  226 (319)
T ss_pred             CeeeeecCceEeecC
Confidence            999999999866443

>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]

Probab=97.05  E-value=0.0052  Score=63.86  Aligned_cols=131  Identities=18%  Similarity=0.172  Sum_probs=94.4

Q ss_pred             CCHHHHHHHHHHhhcCCCceEEEEEcCCCC-------CCHHHHHHHHHHHHHHhhcCCeEEEEecCcchh--hhHHhhcc
Q 005581          162 LSLPQICENFVKAAYDPRIVGIYLHIEPLS-------CGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEK--EYYLACAC  232 (690)
Q Consensus       162 ~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~G-------g~~~~~~eI~~aI~~~r~sgKpVvAy~~~aas~--gY~LAsaa  232 (690)
                      ..-..|++++++|.++. .-.|++-. |.|       -++.+.-.+..+|.++++.+.|.|++...-..|  .--.|+..
T Consensus       141 VvGeki~ra~E~A~e~k-~P~v~f~a-SGGARMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PTtGGVsASfA~lG  218 (294)
T COG0777         141 VVGEKITRAIERAIEDK-LPLVLFSA-SGGARMQEGILSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLG  218 (294)
T ss_pred             HHHHHHHHHHHHHHHhC-CCEEEEec-CcchhHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCCccchhHhHHhcc
Confidence            44678999999998874 54554432 222       245667788899999999999999999743333  44567889


Q ss_pred             CeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005581          233 EELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSST  312 (690)
Q Consensus       233 D~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~  312 (690)
                      |.+++.|.+.+|+.|....                           |+                                
T Consensus       219 Di~iAEP~AlIGFAGpRVI---------------------------EQ--------------------------------  239 (294)
T COG0777         219 DIIIAEPGALIGFAGPRVI---------------------------EQ--------------------------------  239 (294)
T ss_pred             CeeecCcccccccCcchhh---------------------------hh--------------------------------
Confidence            9999999999999988221                           11                                


Q ss_pred             cCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHhCC
Q 005581          313 KGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGV  359 (690)
Q Consensus       313 Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~g~  359 (690)
                            .+++-+-.+.-++|..+++|+||.|....|+.+.+...+.+
T Consensus       240 ------Tire~LPegfQ~aEfLlehG~iD~iv~R~elr~tla~ll~~  280 (294)
T COG0777         240 ------TIREKLPEGFQTAEFLLEHGMIDMIVHRDELRTTLASLLAK  280 (294)
T ss_pred             ------hhcccCCcchhhHHHHHHcCCceeeecHHHHHHHHHHHHHH
Confidence                  11111112334678889999999999999998888877654

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=97.05  E-value=0.013  Score=63.15  Aligned_cols=85  Identities=12%  Similarity=-0.045  Sum_probs=59.8

Q ss_pred             CCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHH-------HHHHHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccC
Q 005581          162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWG-------KVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACE  233 (690)
Q Consensus       162 ~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~-------~~~eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD  233 (690)
                      .++....+.++.|.... +- ||--+|+||..+.       +++.|.+.+..+.....|+|+.+- -++++|.|..+.||
T Consensus       138 ~g~rKa~Rlm~lA~~f~-lP-IItlvDTpGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVViGeggsGGAlal~~aD  215 (322)
T CHL00198        138 GGYRKALRLMKHANKFG-LP-ILTFIDTPGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGIGD  215 (322)
T ss_pred             HHHHHHHHHHHHHHHcC-CC-EEEEEeCCCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCcccHHHHHhhhcCC
Confidence            45667777777776553 32 4555799986532       234466666656566799999885 56677767667899


Q ss_pred             eeEecCCCeEEEecc
Q 005581          234 ELYAPPSAYFSLYGL  248 (690)
Q Consensus       234 ~I~a~p~~~vg~~Gv  248 (690)
                      .++|-|.+.++.++.
T Consensus       216 ~V~m~e~a~~sVisP  230 (322)
T CHL00198        216 SIMMLEYAVYTVATP  230 (322)
T ss_pred             eEEEeCCeEEEecCH
Confidence            999999998877755

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=96.80  E-value=0.018  Score=60.39  Aligned_cols=85  Identities=11%  Similarity=0.062  Sum_probs=61.7

Q ss_pred             CCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHH-------HHHHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccC
Q 005581          162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGK-------VEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACE  233 (690)
Q Consensus       162 ~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~-------~~eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD  233 (690)
                      .++....+.++.|.+.. += ||--+|+||.....       .+.+.+.+..+.....|+|+.+- .++++|+|....||
T Consensus        82 ~g~rKa~R~~~lA~~~~-lP-vV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~~~gGgA~a~~~~D  159 (256)
T PRK12319         82 EGYRKALRLMKQAEKFG-RP-VVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVAD  159 (256)
T ss_pred             HHHHHHHHHHHHHHHcC-CC-EEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCcCcHHHHHhhcCC
Confidence            35677788888886553 33 44457999865422       23455556665556799999885 67888888888999


Q ss_pred             eeEecCCCeEEEecc
Q 005581          234 ELYAPPSAYFSLYGL  248 (690)
Q Consensus       234 ~I~a~p~~~vg~~Gv  248 (690)
                      .++|-|++.++.++.
T Consensus       160 ~v~m~~~a~~~v~~p  174 (256)
T PRK12319        160 QVWMLENTMYAVLSP  174 (256)
T ss_pred             EEEEecCceEEEcCH
Confidence            999999999888766

>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit

Probab=96.74  E-value=0.018  Score=59.82  Aligned_cols=84  Identities=17%  Similarity=0.228  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHH-hCCCceEEEEEccCCCcchhh-------hhHHH---HHHHHh-cCCCCEEEEECccccHHHHHHHH
Q 005581          414 IGEQLIEKIRKVR-ESKRYKAAIIRIDSPGGDALA-------SDLMW---REIRLL-SESKPVIASMSDVAASGGYYMAM  481 (690)
Q Consensus       414 ~~~~l~~~l~~a~-~D~~VkaVVLrinSpGG~~~a-------s~~i~---~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~  481 (690)
                      ......+.+.... ++.+ ..||.-+|+||-....       ...+.   +.+... ..+.|+|+.+-|-+.||||+-..
T Consensus        49 ~~~k~A~~v~~~~d~~f~-~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg  127 (238)
T TIGR03134        49 EALALAQAVLDVIEADDK-RPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHG  127 (238)
T ss_pred             HHHHHHHHHHHHHHhcCC-CCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHc
Confidence            4556666677753 3344 4688889999865422       12223   233333 23799999999999999988776


Q ss_pred             -hcCeEEEecCceecccc
Q 005581          482 -AAGTILAENLTLTGSIG  498 (690)
Q Consensus       482 -aaD~I~A~p~t~~GSIG  498 (690)
                       .+|.+||-|++.++.++
T Consensus       128 ~~ad~v~Alp~A~i~vm~  145 (238)
T TIGR03134       128 LQADRIIALPGAMVHVMD  145 (238)
T ss_pred             cCcCeEEEcCCcEEEecC
Confidence             38999999999876543

Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=96.73  E-value=0.018  Score=67.32  Aligned_cols=85  Identities=14%  Similarity=0.016  Sum_probs=61.6

Q ss_pred             CCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCH-------HHHHHHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccC
Q 005581          162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGW-------GKVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACE  233 (690)
Q Consensus       162 ~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~-------~~~~eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD  233 (690)
                      .+++-.++.++.|.... += ||--+|+||..+       ++++.|.+.+..+.....|+|+.+- -|++||.|..+.||
T Consensus       226 eGyRKAlRlmkLAekfg-LP-IVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~aD  303 (762)
T PLN03229        226 HGYRKALRMMYYADHHG-FP-IVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCAN  303 (762)
T ss_pred             HHHHHHHHHHHHHHHcC-CC-EEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcCC
Confidence            34667777777776553 32 455589998654       2345566666666556799999885 57777777778899


Q ss_pred             eeEecCCCeEEEecc
Q 005581          234 ELYAPPSAYFSLYGL  248 (690)
Q Consensus       234 ~I~a~p~~~vg~~Gv  248 (690)
                      .++|-|.+.++.+|.
T Consensus       304 ~VlMle~A~~sVisP  318 (762)
T PLN03229        304 KLLMLENAVFYVASP  318 (762)
T ss_pred             EEEEecCCeEEecCH
Confidence            999999998887766

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=96.68  E-value=0.036  Score=59.65  Aligned_cols=85  Identities=14%  Similarity=0.040  Sum_probs=60.1

Q ss_pred             CCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHH-------HHHHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccC
Q 005581          162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGK-------VEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACE  233 (690)
Q Consensus       162 ~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~-------~~eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD  233 (690)
                      .++...++.++.|..-. +- ||--+|+||..+..       ++.+.+.+..+.....|+|+.+- -++++|.|....||
T Consensus       135 ~g~rKa~R~m~lA~~f~-iP-vVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGeggsGGAla~~~aD  212 (316)
T TIGR00513       135 EGYRKALRLMKMAERFK-MP-IITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGEGGSGGALAIGVGD  212 (316)
T ss_pred             HHHHHHHHHHHHHHHcC-CC-EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEecccccHHHhhhccCC
Confidence            45667777777776553 32 45558999865332       34455666656556799999885 56677777667899


Q ss_pred             eeEecCCCeEEEecc
Q 005581          234 ELYAPPSAYFSLYGL  248 (690)
Q Consensus       234 ~I~a~p~~~vg~~Gv  248 (690)
                      .++|-|++.++.++.
T Consensus       213 ~v~m~~~a~~sVisP  227 (316)
T TIGR00513       213 KVNMLEYSTYSVISP  227 (316)
T ss_pred             EEEEecCceEEecCH
Confidence            999999999988766

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=96.67  E-value=0.032  Score=64.04  Aligned_cols=85  Identities=21%  Similarity=0.275  Sum_probs=63.6

Q ss_pred             CCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCc--chh-------hhhHHHHHHHHhcCCCCEEEEECccccHHHHHH
Q 005581          409 SSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGG--DAL-------ASDLMWREIRLLSESKPVIASMSDVAASGGYYM  479 (690)
Q Consensus       409 ~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG--~~~-------as~~i~~~I~~l~~~KPVVa~v~g~AaSGGy~i  479 (690)
                      +.+....+.+.++++.|.+. .+- +|.-.+|.|+  ...       +...+...+.++....|+|+.+.|.|++||-|+
T Consensus        72 s~g~~~~~Ki~ra~~~A~~~-~~P-~v~l~dsgGa~~r~~eg~~~l~~~g~i~~~~~~~~~~iP~I~vv~G~~~Gg~A~~  149 (493)
T PF01039_consen   72 SVGEVHGEKIARAIELALEN-GLP-LVYLVDSGGAFLRMQEGVESLMGMGRIFRAIARLSGGIPQISVVTGPCTGGGAYL  149 (493)
T ss_dssp             TBSHHHHHHHHHHHHHHHHH-TEE-EEEEEEESSBCGGGGGHHHHHHHHHHHHHHHHHHHTTS-EEEEEESEEEGGGGHH
T ss_pred             CCCcccceeeehHHHHHHHc-CCC-cEEeccccccccccchhhhhhhhhHHHHHHHHHHhcCCCeEEEEccccccchhhc
Confidence            34557788899999888876 343 4555788888  221       233455666666669999999999999999999


Q ss_pred             HHhcCeEEEecC-ceec
Q 005581          480 AMAAGTILAENL-TLTG  495 (690)
Q Consensus       480 A~aaD~I~A~p~-t~~G  495 (690)
                      +..||++++.+. +.++
T Consensus       150 ~~~~d~~i~~~~~a~i~  166 (493)
T PF01039_consen  150 AALSDFVIMVKGTARIF  166 (493)
T ss_dssp             HHHSSEEEEETTTCEEE
T ss_pred             ccccCccccCccceEEE
Confidence            999999999997 6544

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit

Probab=96.63  E-value=0.029  Score=59.73  Aligned_cols=131  Identities=17%  Similarity=0.143  Sum_probs=88.8

Q ss_pred             CCHHHHHHHHHHhhcCCCceEEEEEcCCCCCC-------HHHHHHHHHHHHHHhhcCCeEEEEec--CcchhhhHHhhcc
Q 005581          162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCG-------WGKVEEIRRHVVDFKKSGKFIIGYVP--VCGEKEYYLACAC  232 (690)
Q Consensus       162 ~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~-------~~~~~eI~~aI~~~r~sgKpVvAy~~--~aas~gY~LAsaa  232 (690)
                      ...+.+.+.++.|.+. ++- ||.-.+|+|.-       +.+.-.+..++.++++.+.|.|+.+.  .++.++|..++.+
T Consensus       139 ~~geKi~r~~e~A~~~-~lP-lV~l~dSgGaRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~  216 (285)
T TIGR00515       139 VVGEKFVRAIEKALED-NCP-LIIFSASGGARMQEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGVSASFAMLG  216 (285)
T ss_pred             HHHHHHHHHHHHHHHc-CCC-EEEEEcCCCcccccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhCC
Confidence            3567788888888754 454 44447887743       22223345577788778999999886  3444467778899


Q ss_pred             CeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005581          233 EELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSST  312 (690)
Q Consensus       233 D~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~  312 (690)
                      |.++|.|++.+|+.|...        +                                                  .+.
T Consensus       217 D~iia~p~A~ig~aGprV--------i--------------------------------------------------e~t  238 (285)
T TIGR00515       217 DLNIAEPKALIGFAGPRV--------I--------------------------------------------------EQT  238 (285)
T ss_pred             CEEEEECCeEEEcCCHHH--------H--------------------------------------------------HHH
Confidence            999999999999888710        0                                                  000


Q ss_pred             cCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHhCC
Q 005581          313 KGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGV  359 (690)
Q Consensus       313 Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~g~  359 (690)
                      .+       +.+....-+++-+.+.|+||.|....|+.+.|.+.+..
T Consensus       239 i~-------e~lpe~~q~ae~~~~~G~vD~iv~~~~~r~~l~~~L~~  278 (285)
T TIGR00515       239 VR-------EKLPEGFQTSEFLLEHGAIDMIVHRPEMKKTLASLLAK  278 (285)
T ss_pred             hc-------CccchhcCCHHHHHhCCCCcEEECcHHHHHHHHHHHHH
Confidence            00       00111233567788899999999999999988887653

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]

Probab=96.61  E-value=0.22  Score=56.94  Aligned_cols=84  Identities=17%  Similarity=0.081  Sum_probs=54.2

Q ss_pred             CCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCC----HHHH---HHHHHHHHHHhhcC-CeEEEEec-CcchhhhHHhhc
Q 005581          161 GLSLPQICENFVKAAYDPRIVGIYLHIEPLSCG----WGKV---EEIRRHVVDFKKSG-KFIIGYVP-VCGEKEYYLACA  231 (690)
Q Consensus       161 ~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~----~~~~---~eI~~aI~~~r~sg-KpVvAy~~-~aas~gY~LAsa  231 (690)
                      ......+++..+.|.++. .-.|.| .||.|+.    +...   -+|...-.  +.|+ +|.|+.+- .|+.+|-|+-..
T Consensus       109 ~~~~~Ki~r~~~~A~~~g-~P~i~l-~dsgGari~~~v~~l~g~g~iF~~~a--~~Sg~IPqIsvv~G~c~gGgaY~pal  184 (526)
T COG4799         109 EMTAKKILRAQELAIENG-LPVIGL-NDSGGARIQEGVPSLAGYGRIFYRNA--RASGVIPQISVVMGPCAGGGAYSPAL  184 (526)
T ss_pred             ccccchHHHHHHHHHHcC-CCEEEE-EcccccccccCccccccchHHHHHHH--HhccCCCEEEEEEecCcccccccccc
Confidence            456778999999998764 333333 3444422    2222   12221111  2344 79999887 688888888889


Q ss_pred             cCeeEecCC-CeEEEecc
Q 005581          232 CEELYAPPS-AYFSLYGL  248 (690)
Q Consensus       232 aD~I~a~p~-~~vg~~Gv  248 (690)
                      ||.++|-.. +.+.+.|.
T Consensus       185 ~D~~imv~~~~~mfltGP  202 (526)
T COG4799         185 TDFVIMVRDQSYMFLTGP  202 (526)
T ss_pred             cceEEEEcCCccEEeeCH
Confidence            999999988 67777776

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=96.59  E-value=0.022  Score=62.94  Aligned_cols=85  Identities=12%  Similarity=-0.031  Sum_probs=58.0

Q ss_pred             CCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHH-------HHHHHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccC
Q 005581          162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWG-------KVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACE  233 (690)
Q Consensus       162 ~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~-------~~~eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD  233 (690)
                      .++...++.++.|.... += ||--+|+||....       +++.|.+.+..+-..+.|+|+.+- -++|+|-+....||
T Consensus       205 eGyRKAlR~mklAekf~-lP-IVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVViGeGgSGGAlalg~aD  282 (431)
T PLN03230        205 NGYRKALRFMRHAEKFG-FP-ILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVIGEGGSGGALAIGCGN  282 (431)
T ss_pred             HHHHHHHHHHHHHHHcC-CC-EEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHHhhcCC
Confidence            35667777777776553 32 4555799985432       234566667666667899999885 44455444445789


Q ss_pred             eeEecCCCeEEEecc
Q 005581          234 ELYAPPSAYFSLYGL  248 (690)
Q Consensus       234 ~I~a~p~~~vg~~Gv  248 (690)
                      .++|-|++.++.++.
T Consensus       283 ~VlMle~A~ysVisP  297 (431)
T PLN03230        283 RMLMMENAVYYVASP  297 (431)
T ss_pred             EEEEecCCEEEecCH
Confidence            999999998887766

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=96.57  E-value=0.024  Score=61.11  Aligned_cols=85  Identities=14%  Similarity=0.028  Sum_probs=60.7

Q ss_pred             CCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHH-------HHHHHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccC
Q 005581          162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWG-------KVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACE  233 (690)
Q Consensus       162 ~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~-------~~~eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD  233 (690)
                      .+++...+.++.|..- ++- ||--+|+||..+.       +++.+.+.+..+.....|+|+.+- -+.++|.|....||
T Consensus       135 eg~rKa~R~m~lA~~f-~lP-IVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiGeg~sGGAla~~~aD  212 (319)
T PRK05724        135 EGYRKALRLMKMAEKF-GLP-IITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGEGGSGGALAIGVGD  212 (319)
T ss_pred             HHHHHHHHHHHHHHHc-CCC-EEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCccHHHHHHHhccC
Confidence            3566677777777654 333 4555899986543       234566667767667899999885 56677777767799


Q ss_pred             eeEecCCCeEEEecc
Q 005581          234 ELYAPPSAYFSLYGL  248 (690)
Q Consensus       234 ~I~a~p~~~vg~~Gv  248 (690)
                      .++|-|++.++.++.
T Consensus       213 ~v~m~~~A~~svisP  227 (319)
T PRK05724        213 RVLMLEYSTYSVISP  227 (319)
T ss_pred             eeeeecCceEeecCH
Confidence            999999999888766

>PRK05654 acetyl-CoA carboxylase subunit beta; Validated

Probab=96.38  E-value=0.057  Score=57.74  Aligned_cols=85  Identities=12%  Similarity=0.090  Sum_probs=60.6

Q ss_pred             CCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCH-------HHHHHHHHHHHHHhhcCCeEEEEec--CcchhhhHHhhcc
Q 005581          162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGW-------GKVEEIRRHVVDFKKSGKFIIGYVP--VCGEKEYYLACAC  232 (690)
Q Consensus       162 ~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~-------~~~~eI~~aI~~~r~sgKpVvAy~~--~aas~gY~LAsaa  232 (690)
                      .+.+.+.+.++.|.+. ++--|. -.+|+|.-.       .+.-.+..++.++++.+.|.|+.+.  .++.++|..++.+
T Consensus       140 ~~~eKi~r~~e~A~~~-~lPlV~-l~dsgGarmqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~  217 (292)
T PRK05654        140 VVGEKIVRAVERAIEE-KCPLVI-FSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLG  217 (292)
T ss_pred             HHHHHHHHHHHHHHHc-CCCEEE-EEcCCCcchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcC
Confidence            4567788888888765 554444 457777432       1222344577778777899999886  3445567778889


Q ss_pred             CeeEecCCCeEEEecc
Q 005581          233 EELYAPPSAYFSLYGL  248 (690)
Q Consensus       233 D~I~a~p~~~vg~~Gv  248 (690)
                      |.++|.|++.+|+.|.
T Consensus       218 D~iia~p~A~ig~aGp  233 (292)
T PRK05654        218 DIIIAEPKALIGFAGP  233 (292)
T ss_pred             CEEEEecCcEEEecCH
Confidence            9999999999999887

>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed

Probab=96.32  E-value=0.085  Score=56.29  Aligned_cols=131  Identities=16%  Similarity=0.214  Sum_probs=88.8

Q ss_pred             CCHHHHHHHHHHhhcCCCceEEEEEcCCCCCC-------HHHHHHHHHHHHHHh-hcCCeEEEEec--CcchhhhHHhhc
Q 005581          162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCG-------WGKVEEIRRHVVDFK-KSGKFIIGYVP--VCGEKEYYLACA  231 (690)
Q Consensus       162 ~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~-------~~~~~eI~~aI~~~r-~sgKpVvAy~~--~aas~gY~LAsa  231 (690)
                      .....+.++++.|.+. ++- +|+-.+|.|+-       +.+.-.+..++..++ ..+.|.|+.+.  .++..+|..|+.
T Consensus       152 v~geKi~ra~e~A~~~-rlP-lV~l~~SGGARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isvl~gPt~GG~aas~a~l  229 (296)
T CHL00174        152 VVGEKITRLIEYATNE-SLP-LIIVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILTSPTTGGVTASFGML  229 (296)
T ss_pred             HHHHHHHHHHHHHHHc-CCC-EEEEECCCCccccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEcCCCchHHHHHHHHc
Confidence            4577899999999765 443 45556666532       223334555566654 46789999985  345567778889


Q ss_pred             cCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 005581          232 CEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSS  311 (690)
Q Consensus       232 aD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~  311 (690)
                      ||.|+|.|.+.+|+.|....                           +.-+.                            
T Consensus       230 ~Diiiae~~A~IgfAGPrVI---------------------------e~t~g----------------------------  254 (296)
T CHL00174        230 GDIIIAEPNAYIAFAGKRVI---------------------------EQTLN----------------------------  254 (296)
T ss_pred             ccEEEEeCCeEEEeeCHHHH---------------------------HHhcC----------------------------
Confidence            99999999999999988211                           00000                            


Q ss_pred             hcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHhCC
Q 005581          312 TKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGV  359 (690)
Q Consensus       312 ~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~g~  359 (690)
                       ..+         ..+.-+++-.++.|+||.+....++.+.|.+.+.+
T Consensus       255 -e~l---------pe~fq~ae~l~~~G~vD~iV~r~~lr~~l~~ll~~  292 (296)
T CHL00174        255 -KTV---------PEGSQAAEYLFDKGLFDLIVPRNLLKGVLSELFQL  292 (296)
T ss_pred             -CcC---------CcccccHHHHHhCcCceEEEcHHHHHHHHHHHHHh
Confidence             001         12234677788999999999999998888877654

>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]

Probab=96.25  E-value=0.036  Score=57.80  Aligned_cols=108  Identities=25%  Similarity=0.339  Sum_probs=67.0

Q ss_pred             cEEEEEeecccccCCC-----C---CCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcch----hh---hhHHHH
Q 005581          389 QIAVIRASGSISRVRS-----P---LSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDA----LA---SDLMWR  453 (690)
Q Consensus       389 ~IAvI~i~G~I~~~~~-----~---~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~----~a---s~~i~~  453 (690)
                      .=|||.-.|.|..-.-     .   .+.+.+....+.++++++.|.+++ ...|++.. |.|...    ++   .-.+.-
T Consensus       109 ~davvtg~g~i~G~pvv~av~df~FmgGSmGsVvGeki~ra~E~A~e~k-~P~v~f~a-SGGARMQEg~lSLMQMaktsa  186 (294)
T COG0777         109 DDAVVTGEGTINGLPVVLAVMDFAFMGGSMGSVVGEKITRAIERAIEDK-LPLVLFSA-SGGARMQEGILSLMQMAKTSA  186 (294)
T ss_pred             CcceEEEeeEECCeEEEEEEEeccccccchhHHHHHHHHHHHHHHHHhC-CCEEEEec-CcchhHhHHHHHHHHHHHHHH
Confidence            3456666666653210     1   122334566899999999999875 55555543 333221    22   222334


Q ss_pred             HHHHhc-CCCCEEEEECccccHHH-HHHHHhcCeEEEecCceecccc
Q 005581          454 EIRLLS-ESKPVIASMSDVAASGG-YYMAMAAGTILAENLTLTGSIG  498 (690)
Q Consensus       454 ~I~~l~-~~KPVVa~v~g~AaSGG-y~iA~aaD~I~A~p~t~~GSIG  498 (690)
                      ++.+++ ++.|.|+.+.+...||= ...|+.+|+++|.|.+++|.-|
T Consensus       187 Al~~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAG  233 (294)
T COG0777         187 ALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAG  233 (294)
T ss_pred             HHHHHHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCc
Confidence            566664 48999999987775442 2467788999999999988655

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit

Probab=96.21  E-value=0.096  Score=55.46  Aligned_cols=86  Identities=20%  Similarity=0.213  Sum_probs=64.8

Q ss_pred             CCHHHHHHHHHHhhcCCCc---eEEEEEcCCCCCCHHH-------HHHHHHHHHHHhhcCCeEEEEec-C--cchhhhHH
Q 005581          162 LSLPQICENFVKAAYDPRI---VGIYLHIEPLSCGWGK-------VEEIRRHVVDFKKSGKFIIGYVP-V--CGEKEYYL  228 (690)
Q Consensus       162 ~s~~~i~~~L~~Aa~D~~I---kgVvL~i~s~Gg~~~~-------~~eI~~aI~~~r~sgKpVvAy~~-~--aas~gY~L  228 (690)
                      .....+...++.|.+|.+-   --||+-++|.|+-+..       .-++..++.+++.. .|+|+.+. .  |..++.|+
T Consensus        78 ~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGaRlqEg~~~L~~~a~i~~~~~~ls~~-vP~Isvv~Gp~gc~GG~a~~  156 (274)
T TIGR03133        78 VHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILDARAA-VPVIGVIGGRVGCFGGMGIA  156 (274)
T ss_pred             HHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCcChhhhHHHHHHHHHHHHHHHHHhCC-CCEEEEEeCCCCcchHHHHH
Confidence            4567899999999874331   1477778888865432       23566667777655 89999885 3  67777799


Q ss_pred             hhccCeeEecCCCeEEEecc
Q 005581          229 ACACEELYAPPSAYFSLYGL  248 (690)
Q Consensus       229 AsaaD~I~a~p~~~vg~~Gv  248 (690)
                      ++.||.++|.|.+.+++.|.
T Consensus       157 a~l~D~vim~~~a~i~~aGP  176 (274)
T TIGR03133       157 AGLCSYLIMTEEGRLGLSGP  176 (274)
T ss_pred             HhcCCEEEEeCCcEEeccCH
Confidence            99999999999999999887

Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.

>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit

Probab=96.12  E-value=0.043  Score=56.98  Aligned_cols=84  Identities=15%  Similarity=0.251  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHhh-cCCCceEEEEEcCCCCCCHHHHHH-------HH---HHHHHHhhcCCeEEEEec-CcchhhhHHhh-
Q 005581          164 LPQICENFVKAA-YDPRIVGIYLHIEPLSCGWGKVEE-------IR---RHVVDFKKSGKFIIGYVP-VCGEKEYYLAC-  230 (690)
Q Consensus       164 ~~~i~~~L~~Aa-~D~~IkgVvL~i~s~Gg~~~~~~e-------I~---~aI~~~r~sgKpVvAy~~-~aas~gY~LAs-  230 (690)
                      .......+.... .+.++ -||.-+|+||-.+..-+|       +.   .++...+..+.|+|+.+- .+.|+||+.-. 
T Consensus        50 ~~k~A~~v~~~~d~~f~~-PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~  128 (238)
T TIGR03134        50 ALALAQAVLDVIEADDKR-PIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGL  128 (238)
T ss_pred             HHHHHHHHHHHHHhcCCC-CEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHcc
Confidence            345666666643 33554 466678999865533322       33   445555566799999986 55566555444 


Q ss_pred             ccCeeEecCCCeEEEecc
Q 005581          231 ACEELYAPPSAYFSLYGL  248 (690)
Q Consensus       231 aaD~I~a~p~~~vg~~Gv  248 (690)
                      .+|.+||-|++.++..+.
T Consensus       129 ~ad~v~Alp~A~i~vm~~  146 (238)
T TIGR03134       129 QADRIIALPGAMVHVMDL  146 (238)
T ss_pred             CcCeEEEcCCcEEEecCH
Confidence            599999999999987765

Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=95.71  E-value=0.29  Score=55.52  Aligned_cols=112  Identities=15%  Similarity=0.130  Sum_probs=66.8

Q ss_pred             cCCeEEEEEEceeeccc----ccc---ccC-----CCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHH
Q 005581          137 RKGSVLTMKLRGQIADQ----LKS---RFS-----SGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHV  204 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~----~~~---~~~-----~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI  204 (690)
                      ..+.|.+|.=+|.+.-.    ...   .|+     +.-.--++.+.|+...+||+.++|+|.+.+..-    ...+.++.
T Consensus       149 ~~G~valvsqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~d~~~~d~l~~l~~D~~t~~I~ly~E~~~~----~~~f~~aa  224 (447)
T TIGR02717       149 KKGGIAFISQSGALLTALLDWAEKNGVGFSYFVSLGNKADIDESDLLEYLADDPDTKVILLYLEGIKD----GRKFLKTA  224 (447)
T ss_pred             CCCCEEEEechHHHHHHHHHHHHhcCCCcceEEECCchhhCCHHHHHHHHhhCCCCCEEEEEecCCCC----HHHHHHHH
Confidence            35668888777754421    110   121     111122577888888999999999999998652    24455666


Q ss_pred             HHHhhcCCeEEEEecCcchhh-hHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCcee
Q 005581          205 VDFKKSGKFIIGYVPVCGEKE-YYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEP  266 (690)
Q Consensus       205 ~~~r~sgKpVvAy~~~aas~g-Y~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~  266 (690)
                      ++... +||||++-.+-...| --..+++       .+..|      ....|..+|++.||-.
T Consensus       225 ~~a~~-~KPVv~~k~Grs~~g~~aa~sHt-------galag------~~~~~~a~~~~~Gv~~  273 (447)
T TIGR02717       225 REISK-KKPIVVLKSGTSEAGAKAASSHT-------GALAG------SDEAYDAAFKQAGVIR  273 (447)
T ss_pred             HHHcC-CCCEEEEecCCChhhhhhhhhcc-------ccccC------hHHHHHHHHHHCCeEE
Confidence            66644 899999986432222 1111211       22222      3345788899999865

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=95.24  E-value=0.19  Score=57.91  Aligned_cols=85  Identities=14%  Similarity=0.107  Sum_probs=59.1

Q ss_pred             CCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHH-------HHHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhc--
Q 005581          162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKV-------EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACA--  231 (690)
Q Consensus       162 ~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~-------~eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsa--  231 (690)
                      .+.+.+.+.++.|... ++- ||.-+|++|.....-       ..+.+.+..+.+...|.|+++- .+.+++|+..+.  
T Consensus       334 ~~~~K~~r~i~~a~~~-~lP-lV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~am~~~~  411 (512)
T TIGR01117       334 DSSDKIARFIRFCDAF-NIP-IVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYLAMCSKH  411 (512)
T ss_pred             HHHHHHHHHHHHHHHc-CCC-EEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHHHhcccc
Confidence            3566677777877544 443 455588988643333       3344455556667899999997 456667666653  


Q ss_pred             --cCeeEecCCCeEEEecc
Q 005581          232 --CEELYAPPSAYFSLYGL  248 (690)
Q Consensus       232 --aD~I~a~p~~~vg~~Gv  248 (690)
                        +|.+||-|++.++..|.
T Consensus       412 ~~~d~~~a~p~a~~~v~~p  430 (512)
T TIGR01117       412 LGADQVYAWPTAEIAVMGP  430 (512)
T ss_pred             CCCCEEEEcCCCeEeecCH
Confidence              99999999999999887

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>PRK07189 malonate decarboxylase subunit beta; Reviewed

Probab=95.13  E-value=0.11  Score=55.56  Aligned_cols=86  Identities=22%  Similarity=0.257  Sum_probs=65.4

Q ss_pred             CCHHHHHHHHHHhhcCCC---ceEEEEEcCCCCCCHH-------HHHHHHHHHHHHhhcCCeEEEEec-C--cchhhhHH
Q 005581          162 LSLPQICENFVKAAYDPR---IVGIYLHIEPLSCGWG-------KVEEIRRHVVDFKKSGKFIIGYVP-V--CGEKEYYL  228 (690)
Q Consensus       162 ~s~~~i~~~L~~Aa~D~~---IkgVvL~i~s~Gg~~~-------~~~eI~~aI~~~r~sgKpVvAy~~-~--aas~gY~L  228 (690)
                      .+...+...++.|.++.+   ..-+|+-++|.|+-+.       +.-++..++.+++.. .|+|+.+. .  |..++-|+
T Consensus        87 ~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGaRlqEg~~~L~~~a~i~~~~~~ls~~-VP~I~vv~G~~gc~GG~a~~  165 (301)
T PRK07189         87 VHGAKLAGALELAAEDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDLRAA-VPVIGLIGGRVGCFGGMGIA  165 (301)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCcCccchHHHHHHHHHHHHHHHHHhCC-CCEEEEEcCCCCCcHHHHHH
Confidence            457789999999987641   2356777888775432       334666677777665 99999986 3  77777778


Q ss_pred             hhccCeeEecCCCeEEEecc
Q 005581          229 ACACEELYAPPSAYFSLYGL  248 (690)
Q Consensus       229 AsaaD~I~a~p~~~vg~~Gv  248 (690)
                      ++.||.|+|.+.+.+++.|.
T Consensus       166 a~l~D~iIm~~~a~iglaGP  185 (301)
T PRK07189        166 AALCSYLIVSEEGRLGLSGP  185 (301)
T ss_pred             HhcCCEEEEECCcEEeccCH
Confidence            99999999999999999988

>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]

Probab=94.57  E-value=0.042  Score=57.73  Aligned_cols=79  Identities=19%  Similarity=0.181  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHhCCCceEEEEEccCCCcch-------hhhhHHHHHHHHhc-CCCCEEEEECccccHHHHHHHHhcCe
Q 005581          414 IGEQLIEKIRKVRESKRYKAAIIRIDSPGGDA-------LASDLMWREIRLLS-ESKPVIASMSDVAASGGYYMAMAAGT  485 (690)
Q Consensus       414 ~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~-------~as~~i~~~I~~l~-~~KPVVa~v~g~AaSGGy~iA~aaD~  485 (690)
                      .+..-++.++.|++=  -.-||.-||+||...       -.++.|.+.+.++. -+.||||.|=|-.-|||..-...||.
T Consensus       135 GyRKAlRlm~~AekF--~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~  212 (317)
T COG0825         135 GYRKALRLMKLAEKF--GLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADR  212 (317)
T ss_pred             HHHHHHHHHHHHHHh--CCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHH
Confidence            344444444444322  245888899998643       24788888887764 39999999999999999998889999


Q ss_pred             EEEecCcee
Q 005581          486 ILAENLTLT  494 (690)
Q Consensus       486 I~A~p~t~~  494 (690)
                      ++|-.+++.
T Consensus       213 V~mle~s~y  221 (317)
T COG0825         213 VLMLENSTY  221 (317)
T ss_pred             HHHHHhcee
Confidence            999998863

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=94.31  E-value=0.33  Score=56.63  Aligned_cols=85  Identities=15%  Similarity=0.137  Sum_probs=61.1

Q ss_pred             CCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhh----------hhHHHHHHHHhc-CCCCEEEEECccccHHHH
Q 005581          409 SSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA----------SDLMWREIRLLS-ESKPVIASMSDVAASGGY  477 (690)
Q Consensus       409 ~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~a----------s~~i~~~I~~l~-~~KPVVa~v~g~AaSGGy  477 (690)
                      +.+....+.+.+.++.|.+.. + -||.-++|+|+....          ...|+..+.++. ...|.|+.+-|.|++||.
T Consensus       144 s~g~~~~~Ki~r~~elA~~~~-l-PlV~l~DSgGarl~~q~e~~~~~~~~g~if~~~~~ls~~~VP~Isvv~G~~~gGgA  221 (569)
T PLN02820        144 TYYPITVKKHLRAQEIAAQCR-L-PCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSAGIPQIALVLGSCTAGGA  221 (569)
T ss_pred             CCCHHHHHHHHHHHHHHHHcC-C-CEEEEEeCCCcCCcccccccchHhHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHH
Confidence            344567888998888887654 3 577778998876521          123444444444 369999999999999999


Q ss_pred             HHHHhcCeEEEec-Cceec
Q 005581          478 YMAMAAGTILAEN-LTLTG  495 (690)
Q Consensus       478 ~iA~aaD~I~A~p-~t~~G  495 (690)
                      |+...||.+++.. ++.++
T Consensus       222 y~~a~~D~vim~~~~a~i~  240 (569)
T PLN02820        222 YVPAMADESVIVKGNGTIF  240 (569)
T ss_pred             HHHHhCCceEEecCCcEEE
Confidence            9999999988775 55444

>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]

Probab=93.92  E-value=0.12  Score=54.51  Aligned_cols=84  Identities=14%  Similarity=0.041  Sum_probs=61.0

Q ss_pred             CCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCH-------HHHHHHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhcc
Q 005581          161 GLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGW-------GKVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACAC  232 (690)
Q Consensus       161 ~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~-------~~~~eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaa  232 (690)
                      .-+++.-++.++.|..=..  =|+.-||++|...       .+++.|.+-+.++-....|||+.+= -.+|||-+--..|
T Consensus       133 PeGyRKAlRlm~~AekF~l--PiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~va  210 (317)
T COG0825         133 PEGYRKALRLMKLAEKFGL--PIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVA  210 (317)
T ss_pred             chHHHHHHHHHHHHHHhCC--CEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHH
Confidence            3456666666666654322  3677789988432       5667899999998888899999875 5667777777789


Q ss_pred             CeeEecCCCeEEEe
Q 005581          233 EELYAPPSAYFSLY  246 (690)
Q Consensus       233 D~I~a~p~~~vg~~  246 (690)
                      |+|+|-..+....+
T Consensus       211 d~V~mle~s~ySVi  224 (317)
T COG0825         211 DRVLMLENSTYSVI  224 (317)
T ss_pred             HHHHHHHhceeeec
Confidence            99999998877655

>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=93.38  E-value=0.82  Score=49.69  Aligned_cols=167  Identities=14%  Similarity=0.024  Sum_probs=99.3

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC-----CCCCHHHHHHHH-----------
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-----LSCGWGKVEEIR-----------  201 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s-----~Gg~~~~~~eI~-----------  201 (690)
                      ++...+|.|+.|=.    -+..+.-+...+...|.+-..||.++.|||.-++     .||++..+.|+.           
T Consensus        45 ~~~~r~itLNRPKa----LNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~~~f  120 (401)
T KOG1684|consen   45 KGCARVITLNRPKA----LNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEVKKF  120 (401)
T ss_pred             CCceeEEEecCchh----hccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHHHHH
Confidence            44566777777621    1111223345677889999999999999999885     378866553321           


Q ss_pred             -----HHHHHHhhcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeecccc
Q 005581          202 -----RHVVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYK  275 (690)
Q Consensus       202 -----~aI~~~r~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yK  275 (690)
                           ..+..+-.-.||.||.+++ -.++|.-|+...-..++...+.+.....            -+|.-|         
T Consensus       121 F~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt------------~IGlfP---------  179 (401)
T KOG1684|consen  121 FTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPET------------GIGLFP---------  179 (401)
T ss_pred             HHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceeccccc------------cccccc---------
Confidence                 1111111235999999994 4466777877776666666655544433            222222         


Q ss_pred             ccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHHHH
Q 005581          276 SAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKE  355 (690)
Q Consensus       276 sa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~  355 (690)
                      ++|..|..... +.   ++-.+                        --++|..+++.+|+..||.......+++ ..|.+
T Consensus       180 DVG~Sy~lsrl-pg---~lg~Y------------------------LgLTG~rl~GaD~~~~GlATHyv~S~~l-~~Lee  230 (401)
T KOG1684|consen  180 DVGASYFLSRL-PG---YLGLY------------------------LGLTGQRLSGADALRCGLATHYVPSEKL-PSLEE  230 (401)
T ss_pred             CccceeehhhC-cc---HHHHh------------------------hhhccceecchHHHHhcchhhccchhhh-hHHHH
Confidence            34444421000 00   00000                        0245788899999999999999876664 55666


Q ss_pred             HhC
Q 005581          356 RLG  358 (690)
Q Consensus       356 ~~g  358 (690)
                      +++
T Consensus       231 ~L~  233 (401)
T KOG1684|consen  231 RLL  233 (401)
T ss_pred             HHh
Confidence            665

>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6

Probab=91.62  E-value=0.22  Score=48.28  Aligned_cols=71  Identities=18%  Similarity=0.110  Sum_probs=49.9

Q ss_pred             hHHHHHHHHHHHHHhCCCceEEEEEccCCCcc-hhhhhHHHHHHHHhc---CCCCEEEEECccccH-----HHHHHHHhc
Q 005581          413 IIGEQLIEKIRKVRESKRYKAAIIRIDSPGGD-ALASDLMWREIRLLS---ESKPVIASMSDVAAS-----GGYYMAMAA  483 (690)
Q Consensus       413 ~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~-~~as~~i~~~I~~l~---~~KPVVa~v~g~AaS-----GGy~iA~aa  483 (690)
                      |..+...+.|+...+||++++|++.+--..|. ..-...+.++++..+   .+||||+++.|..+-     ++.-+.-.+
T Consensus        56 id~~~~~~~l~~~~~Dp~v~vIlvd~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvVa~v~GT~~dpq~~~~~~~~L~~~  135 (153)
T PF00549_consen   56 IDPSTRNEALEIEAADPEVKVILVDIVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVVARVCGTNADPQGRMGQAGALEDA  135 (153)
T ss_dssp             T-SSHHHHHHHHHHTSTTESEEEEEEESSSSSHHHHHHHHHHHHSHCTHTTT-SEEEEEEESTTCHTTSCHHHHHHHHCT
T ss_pred             cCHHHHHHHHHHHhcCCCccEEEEEeccccCchHHHHHHHHHHHHhccccCCCCcEEEEeeeecCCCCCcHHHHHHHHhC
Confidence            44678889999999999999999998754232 233445566666554   579999999998887     555544433

2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....

>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]

Probab=91.55  E-value=0.7  Score=52.95  Aligned_cols=81  Identities=15%  Similarity=0.110  Sum_probs=55.8

Q ss_pred             CcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcch-------hhhhHHHHHHHHhcCCCCEEEEECccccHHHHHHHHh
Q 005581          410 SSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDA-------LASDLMWREIRLLSESKPVIASMSDVAASGGYYMAMA  482 (690)
Q Consensus       410 ~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~-------~as~~i~~~I~~l~~~KPVVa~v~g~AaSGGy~iA~a  482 (690)
                      ......+.+++..+.|.++.- - +|.-.+|.|+..       .+.-.|+..-.++....|.|+.|-|.|++||.|+-..
T Consensus       107 ~~~~~~~Ki~r~~~~A~~~g~-P-~i~l~dsgGari~~~v~~l~g~g~iF~~~a~~Sg~IPqIsvv~G~c~gGgaY~pal  184 (526)
T COG4799         107 LGEMTAKKILRAQELAIENGL-P-VIGLNDSGGARIQEGVPSLAGYGRIFYRNARASGVIPQISVVMGPCAGGGAYSPAL  184 (526)
T ss_pred             ccccccchHHHHHHHHHHcCC-C-EEEEEcccccccccCccccccchHHHHHHHHhccCCCEEEEEEecCcccccccccc
Confidence            344567888888887776532 2 333345655432       1223344333334446999999999999999999999


Q ss_pred             cCeEEEecCc
Q 005581          483 AGTILAENLT  492 (690)
Q Consensus       483 aD~I~A~p~t  492 (690)
                      ||++||...+
T Consensus       185 ~D~~imv~~~  194 (526)
T COG4799         185 TDFVIMVRDQ  194 (526)
T ss_pred             cceEEEEcCC
Confidence            9999999985

>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A

Probab=90.43  E-value=0.59  Score=44.55  Aligned_cols=55  Identities=13%  Similarity=0.273  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECccccHH
Q 005581          417 QLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASG  475 (690)
Q Consensus       417 ~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g~AaSG  475 (690)
                      .+.+.|+.+.+||++|+|++.+++-+-    .+...+.+++....||||+...|....|
T Consensus        41 ~~~d~l~~~~~D~~t~~I~ly~E~~~d----~~~f~~~~~~a~~~KPVv~lk~Grt~~g   95 (138)
T PF13607_consen   41 DFADLLEYLAEDPDTRVIVLYLEGIGD----GRRFLEAARRAARRKPVVVLKAGRTEAG   95 (138)
T ss_dssp             -HHHHHHHHCT-SS--EEEEEES--S-----HHHHHHHHHHHCCCS-EEEEE-------
T ss_pred             CHHHHHHHHhcCCCCCEEEEEccCCCC----HHHHHHHHHHHhcCCCEEEEeCCCchhh
Confidence            355667788889999999999986432    3667777888766699999999875544

>COG3904 Predicted periplasmic protein [Function unknown]

Probab=89.04  E-value=7.6  Score=39.41  Aligned_cols=93  Identities=19%  Similarity=0.149  Sum_probs=62.3

Q ss_pred             CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEE-EEccCCCcchhhhhHHHHHHHHhcCCCCEE
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAI-IRIDSPGGDALASDLMWREIRLLSESKPVI  465 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVV-LrinSpGG~~~as~~i~~~I~~l~~~KPVV  465 (690)
                      .++..-|.+++++.+..          ....+-+.++    .+..-... +..|||||++.-.-.+.+.|++.  +.-+.
T Consensus        73 dgr~l~VvVse~~a~~d----------a~sal~~lir----~~G~y~~t~v~lnSpGGsv~kA~~mgkLiRe~--gfdt~  136 (245)
T COG3904          73 DGRQLPVVVSEPGANVD----------AASALGRLIR----KAGLYIATGVTLNSPGGSVAKACSMGKLIRED--GFDTA  136 (245)
T ss_pred             cCceeeEEEcCCCCCcc----------HHHHHHHHHh----ccCceeEEEEEecCCCCcHHHHHhhhhhhhhc--ccCcc
Confidence            35667777888776421          1122333333    33333333 67899999998777777778765  55666


Q ss_pred             EEECccccHHHHHHHHhcCeEEEecCceec
Q 005581          466 ASMSDVAASGGYYMAMAAGTILAENLTLTG  495 (690)
Q Consensus       466 a~v~g~AaSGGy~iA~aaD~I~A~p~t~~G  495 (690)
                      +.-..+|+|..-++-+++=.+++.+.+.+|
T Consensus       137 v~s~A~CasaCpl~fagGvrRvve~~ayiG  166 (245)
T COG3904         137 VDSGAMCASACPLMFAGGVRRVVEDFAYIG  166 (245)
T ss_pred             ccchhhhhccchhhhhcceeeeecccceee
Confidence            666778999888888888889999866544

>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins

Probab=88.12  E-value=3.8  Score=42.41  Aligned_cols=76  Identities=17%  Similarity=0.210  Sum_probs=51.1

Q ss_pred             HHHHHHHHHhCCCceEEEEEccCCCcchhhhhH----------HHHHHHHh-cCCCCEEEEECccccHHHHH-HHHhcCe
Q 005581          418 LIEKIRKVRESKRYKAAIIRIDSPGGDALASDL----------MWREIRLL-SESKPVIASMSDVAASGGYY-MAMAAGT  485 (690)
Q Consensus       418 l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~----------i~~~I~~l-~~~KPVVa~v~g~AaSGGy~-iA~aaD~  485 (690)
                      +.+.+.+.-++..-+.||+-+|+||--..--|+          ..+.+... ..+-|||+.+-|.|+||||. -.+.||.
T Consensus        51 lA~~V~~~i~~~~krpIv~lVD~~sQa~grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~r  130 (234)
T PF06833_consen   51 LAKAVLDTIRSGPKRPIVALVDVPSQAYGRREELLGINQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQANR  130 (234)
T ss_pred             HHHHHHHHHhcCCCCCEEEEEeCCccccchHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhcc
Confidence            333444444556668999999999753322222          12222222 34999999999999999986 4678899


Q ss_pred             EEEecCce
Q 005581          486 ILAENLTL  493 (690)
Q Consensus       486 I~A~p~t~  493 (690)
                      +||-|.+.
T Consensus       131 l~AL~ga~  138 (234)
T PF06833_consen  131 LIALPGAM  138 (234)
T ss_pred             hhcCCCCe
Confidence            99999554

Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]

Probab=87.99  E-value=0.62  Score=49.21  Aligned_cols=84  Identities=20%  Similarity=0.294  Sum_probs=58.5

Q ss_pred             CCcEEEEEeecccccCCC------CC------CCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHH
Q 005581          387 GDQIAVIRASGSISRVRS------PL------SLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWRE  454 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~------~~------~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~  454 (690)
                      +++|+||.-+|+.+....      ..      +..++.+..-.+++.|+.+.+||..++|||-.. .||..-  +.-.+.
T Consensus       145 ~G~IGiVSrSGTLTyE~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmiGE-iGG~aE--e~AA~~  221 (293)
T COG0074         145 PGNIGIVSRSGTLTYEAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMIGE-IGGPAE--EEAAEY  221 (293)
T ss_pred             CCceEEEecCcchHHHHHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHHHhcCccccEEEEEec-CCCcHH--HHHHHH
Confidence            589999999999874211      11      122345566788999999999999999999764 455442  222344


Q ss_pred             HHHhcCCCCEEEEECcccc
Q 005581          455 IRLLSESKPVIASMSDVAA  473 (690)
Q Consensus       455 I~~l~~~KPVVa~v~g~Aa  473 (690)
                      |++...+||||+++.|..+
T Consensus       222 i~~~~~~KPVVa~iaG~ta  240 (293)
T COG0074         222 IKANATRKPVVAYIAGRTA  240 (293)
T ss_pred             HHHhccCCCEEEEEeccCC
Confidence            5542235999999999998

>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]

Probab=87.77  E-value=1  Score=47.55  Aligned_cols=86  Identities=13%  Similarity=0.149  Sum_probs=59.0

Q ss_pred             ccccccCCeEEEEEEceeecccccc-----ccC---------CCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHH
Q 005581          132 PWERVRKGSVLTMKLRGQIADQLKS-----RFS---------SGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKV  197 (690)
Q Consensus       132 p~~~~~~~~VlvI~l~G~I~~~~~~-----~~~---------~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~  197 (690)
                      |..-.+.+.|.++-=+|+++.....     .++         +.+.-..++++|+...+||+.++|++- ...||...  
T Consensus       139 p~~i~~~G~IGiVSrSGTLTyE~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmi-GEiGG~aE--  215 (293)
T COG0074         139 PGNIYKPGNIGIVSRSGTLTYEAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMI-GEIGGPAE--  215 (293)
T ss_pred             hhhhccCCceEEEecCcchHHHHHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHHHhcCccccEEEEE-ecCCCcHH--
Confidence            5555578899999999988754321     111         234556789999999999999999984 44444322  


Q ss_pred             HHHHHHHHHHhhcCCeEEEEecCc
Q 005581          198 EEIRRHVVDFKKSGKFIIGYVPVC  221 (690)
Q Consensus       198 ~eI~~aI~~~r~sgKpVvAy~~~a  221 (690)
                      ++-++.|++ +.++||||||+...
T Consensus       216 e~AA~~i~~-~~~~KPVVa~iaG~  238 (293)
T COG0074         216 EEAAEYIKA-NATRKPVVAYIAGR  238 (293)
T ss_pred             HHHHHHHHH-hccCCCEEEEEecc
Confidence            334455665 45679999999743

>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A

Probab=87.20  E-value=1.2  Score=42.50  Aligned_cols=83  Identities=13%  Similarity=0.051  Sum_probs=43.5

Q ss_pred             HHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEecCcchhhhHHhhccCeeEecC-CCeEE
Q 005581          166 QICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPP-SAYFS  244 (690)
Q Consensus       166 ~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~~aas~gY~LAsaaD~I~a~p-~~~vg  244 (690)
                      ++.+.|+...+||++++|++.+++.+-    .+++.++.++.+.. ||||++-.+-...|-       +..+.- .+.. 
T Consensus        41 ~~~d~l~~~~~D~~t~~I~ly~E~~~d----~~~f~~~~~~a~~~-KPVv~lk~Grt~~g~-------~aa~sHTgsla-  107 (138)
T PF13607_consen   41 DFADLLEYLAEDPDTRVIVLYLEGIGD----GRRFLEAARRAARR-KPVVVLKAGRTEAGA-------RAAASHTGSLA-  107 (138)
T ss_dssp             -HHHHHHHHCT-SS--EEEEEES--S-----HHHHHHHHHHHCCC-S-EEEEE---------------------------
T ss_pred             CHHHHHHHHhcCCCCCEEEEEccCCCC----HHHHHHHHHHHhcC-CCEEEEeCCCchhhh-------hhhhccCCccc-
Confidence            467777778889999999999998763    36777788887665 999999874432221       111111 2222 


Q ss_pred             EeccceeccchhhhhhhcCcee
Q 005581          245 LYGLTVQASFLGGVLEKVGIEP  266 (690)
Q Consensus       245 ~~Gv~~~~~~~k~lLeKlGI~~  266 (690)
                           ....-+..+|++.||..
T Consensus       108 -----g~~~~~~a~~~~aGv~~  124 (138)
T PF13607_consen  108 -----GDDAVYDAALRQAGVVR  124 (138)
T ss_dssp             -------HHHHHHHHHHCTEEE
T ss_pred             -----CcHHHHHHHHHHcCceE
Confidence                 23344677888888865

>cd06567 Peptidase_S41 C-terminal processing peptidase family S41

Probab=86.83  E-value=13  Score=37.82  Aligned_cols=81  Identities=21%  Similarity=0.204  Sum_probs=57.4

Q ss_pred             EEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-CCCcchhhhhHHHHHHHH-----------
Q 005581          390 IAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-SPGGDALASDLMWREIRL-----------  457 (690)
Q Consensus       390 IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-SpGG~~~as~~i~~~I~~-----------  457 (690)
                      |+.|++..-..           ....+.+.+.+.+..+  +++++||.+- -+||....+..+...+..           
T Consensus        61 igYi~i~~f~~-----------~~~~~~~~~~~~~~~~--~~~~lIiDLR~N~GG~~~~a~~l~~~~~~~~~~~~~~~~~  127 (224)
T cd06567          61 IGYIRIPSFSA-----------ESTAEELREALAELKK--GVKGLILDLRNNPGGLLSAAVELASLFLPKGKIVVTTRRR  127 (224)
T ss_pred             eEEEEECccCC-----------cchHHHHHHHHHHHHc--CCCEEEEEcCCCCCccHHHHHHHHHHhcCCCcEEEEEecC
Confidence            78888876541           1235677777777766  7999999763 478887666555444321           


Q ss_pred             -------------hcCCCCEEEEECccccHHHHHHHHhc
Q 005581          458 -------------LSESKPVIASMSDVAASGGYYMAMAA  483 (690)
Q Consensus       458 -------------l~~~KPVVa~v~g~AaSGGy~iA~aa  483 (690)
                                   ..-.+||++.+++..+|++=.++.+-
T Consensus       128 ~~~~~~~~~~~~~~~~~~pv~vL~~~~taSaaE~~a~~l  166 (224)
T cd06567         128 GGNETEYVAPGGGSLYDGPLVVLVNEGSASASEIFAGAL  166 (224)
T ss_pred             CCceeEEecCCCCcccCCCEEEEECCCCccHHHHHHHHH
Confidence                         01269999999999999999888876

Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn pr

>COG3904 Predicted periplasmic protein [Function unknown]

Probab=86.55  E-value=4.2  Score=41.22  Aligned_cols=97  Identities=10%  Similarity=0.042  Sum_probs=65.8

Q ss_pred             CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEE
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGY  217 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy  217 (690)
                      .+..+.+-+++++.+...        ...+-+.++++..+   ....+.+|||||++..+-++.+.|++   .+.-+...
T Consensus        73 dgr~l~VvVse~~a~~da--------~sal~~lir~~G~y---~~t~v~lnSpGGsv~kA~~mgkLiRe---~gfdt~v~  138 (245)
T COG3904          73 DGRQLPVVVSEPGANVDA--------ASALGRLIRKAGLY---IATGVTLNSPGGSVAKACSMGKLIRE---DGFDTAVD  138 (245)
T ss_pred             cCceeeEEEcCCCCCccH--------HHHHHHHHhccCce---eEEEEEecCCCCcHHHHHhhhhhhhh---cccCcccc
Confidence            456777778877665432        12233334444322   22336789999999999999998885   33333333


Q ss_pred             e-cCcchhhhHHhhccCeeEecCCCeEEEecc
Q 005581          218 V-PVCGEKEYYLACACEELYAPPSAYFSLYGL  248 (690)
Q Consensus       218 ~-~~aas~gY~LAsaaD~I~a~p~~~vg~~Gv  248 (690)
                      - ..|+|+--++-+..=..++.+.+++|.+-+
T Consensus       139 s~A~CasaCpl~fagGvrRvve~~ayiGVHq~  170 (245)
T COG3904         139 SGAMCASACPLMFAGGVRRVVEDFAYIGVHQI  170 (245)
T ss_pred             chhhhhccchhhhhcceeeeecccceeeeeec
Confidence            2 378888777777888899999999999966

>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins

Probab=86.05  E-value=4.2  Score=42.12  Aligned_cols=121  Identities=16%  Similarity=0.208  Sum_probs=81.1

Q ss_pred             HHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHH----------HHHHHHHHhhcCCeEEEEec-CcchhhhHH-hhccCe
Q 005581          167 ICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEE----------IRRHVVDFKKSGKFIIGYVP-VCGEKEYYL-ACACEE  234 (690)
Q Consensus       167 i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~e----------I~~aI~~~r~sgKpVvAy~~-~aas~gY~L-AsaaD~  234 (690)
                      +.+.+.+.-.+..=+.|++-+|+||=.+..-+|          +.+++...|..|-|||+.+- .+.||+|+- +..||+
T Consensus        51 lA~~V~~~i~~~~krpIv~lVD~~sQa~grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~r  130 (234)
T PF06833_consen   51 LAKAVLDTIRSGPKRPIVALVDVPSQAYGRREELLGINQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQANR  130 (234)
T ss_pred             HHHHHHHHHhcCCCCCEEEEEeCCccccchHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhcc
Confidence            344444444444456788889998744444443          44566667888999999987 577777653 457999


Q ss_pred             eEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005581          235 LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKG  314 (690)
Q Consensus       235 I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg  314 (690)
                      +|+-|.+.+-..+.                                                          ..+|+=.+
T Consensus       131 l~AL~ga~i~vM~~----------------------------------------------------------~s~ARVTk  152 (234)
T PF06833_consen  131 LIALPGAMIHVMGK----------------------------------------------------------PSAARVTK  152 (234)
T ss_pred             hhcCCCCeeecCCh----------------------------------------------------------HHhHHHhh
Confidence            99998555533322                                                          23344456


Q ss_pred             CCHHHHHHHHhcC-c--ccHHHHHhcCCeeEecc
Q 005581          315 KRKEDIERFINDG-V--YKVERLKEEGFITNVLY  345 (690)
Q Consensus       315 ~~~~~v~~~~~~~-v--~~a~eAl~~GLID~i~~  345 (690)
                      ++.++++++...- +  +..+--.++|+++++..
T Consensus       153 ~~ve~Le~la~s~PvfA~gi~ny~~lG~l~~l~~  186 (234)
T PF06833_consen  153 RPVEELEELAKSVPVFAPGIENYAKLGALDELWD  186 (234)
T ss_pred             cCHHHHHHHhhcCCCcCCCHHHHHHhccHHHHhc
Confidence            7888888887653 3  35578889999998866

Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6

Probab=85.27  E-value=1.6  Score=42.40  Aligned_cols=56  Identities=16%  Similarity=0.046  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHhhcCCCceEEEEEcCCC-CCCHHHHHHHHHHHHHHh--hcCCeEEEEec
Q 005581          164 LPQICENFVKAAYDPRIVGIYLHIEPL-SCGWGKVEEIRRHVVDFK--KSGKFIIGYVP  219 (690)
Q Consensus       164 ~~~i~~~L~~Aa~D~~IkgVvL~i~s~-Gg~~~~~~eI~~aI~~~r--~sgKpVvAy~~  219 (690)
                      ...+.++|+...+||++++|++++--. |..-..+.++.+++++.+  ...||||+++.
T Consensus        58 ~~~~~~~l~~~~~Dp~v~vIlvd~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvVa~v~  116 (153)
T PF00549_consen   58 PSTRNEALEIEAADPEVKVILVDIVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVVARVC  116 (153)
T ss_dssp             SSHHHHHHHHHHTSTTESEEEEEEESSSSSHHHHHHHHHHHHSHCTHTTT-SEEEEEEE
T ss_pred             HHHHHHHHHHHhcCCCccEEEEEeccccCchHHHHHHHHHHHHhccccCCCCcEEEEee
Confidence            457899999999999999999988655 545566677877777764  24689999996

2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....

>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists

Probab=85.26  E-value=3.3  Score=37.36  Aligned_cols=71  Identities=11%  Similarity=0.203  Sum_probs=57.5

Q ss_pred             cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCC--------ceEEEEEcCCC-CCCHHHHHHHHHHHHHH
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPR--------IVGIYLHIEPL-SCGWGKVEEIRRHVVDF  207 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~--------IkgVvL~i~s~-Gg~~~~~~eI~~aI~~~  207 (690)
                      ..+.+++++++|++...         +...+.+.+.+......        ++.|||++... .-+.+.++.|.+..+.+
T Consensus         6 ~~~~v~ii~~~g~l~f~---------~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgi~~L~~~~~~~   76 (117)
T PF01740_consen    6 THDGVLIIRLDGPLFFA---------NAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSGVSFIDSSGIQALVDIIKEL   76 (117)
T ss_dssp             EETTEEEEEEESEESHH---------HHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETTESEESHHHHHHHHHHHHHH
T ss_pred             EECCEEEEEEeeEEEHH---------HHHHHHHHHHHhhhcccccccccccceEEEEEEEeCCcCCHHHHHHHHHHHHHH
Confidence            35678999999999863         35788999988887765        89999999874 56788888999999999


Q ss_pred             hhcCCeEEE
Q 005581          208 KKSGKFIIG  216 (690)
Q Consensus       208 r~sgKpVvA  216 (690)
                      ++.|..++-
T Consensus        77 ~~~g~~~~l   85 (117)
T PF01740_consen   77 RRRGVQLVL   85 (117)
T ss_dssp             HHTTCEEEE
T ss_pred             HHCCCEEEE
Confidence            887777753

It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....

>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=83.51  E-value=0.8  Score=50.02  Aligned_cols=142  Identities=17%  Similarity=0.183  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHHhCCCceEEEEEccC-------------CCcchhhhhHHHHH----HHHh-cCCCCEEEEECccccHH
Q 005581          414 IGEQLIEKIRKVRESKRYKAAIIRIDS-------------PGGDALASDLMWRE----IRLL-SESKPVIASMSDVAASG  475 (690)
Q Consensus       414 ~~~~l~~~l~~a~~D~~VkaVVLrinS-------------pGG~~~as~~i~~~----I~~l-~~~KPVVa~v~g~AaSG  475 (690)
                      --.+|...|++...+..|+|..+.-..             -.|+.+-+-.-|-.    |... .++.|+.+++++.+--|
T Consensus        83 Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~~g  162 (380)
T KOG1683|consen   83 LKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSPAG  162 (380)
T ss_pred             HHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccccC
Confidence            357888999999999999998875322             12333333222322    2222 35788888888888888


Q ss_pred             H--HHHHHhcCeEEEe--cCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHHHH
Q 005581          476 G--YYMAMAAGTILAE--NLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNA  551 (690)
Q Consensus       476 G--y~iA~aaD~I~A~--p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~  551 (690)
                      |  +.++-||++++.-  |.=..|          ...++..+|+...                            .++.+
T Consensus       163 k~~vvVg~c~gf~v~r~l~~y~~~----------~~~~l~e~g~~p~----------------------------~iD~~  204 (380)
T KOG1683|consen  163 KLPVVVGNCCGFRVNRLLPPYTIG----------LNELLLEIGADPW----------------------------LIDSL  204 (380)
T ss_pred             CccEEeccCCceEEEecccHHHHH----------HHHHHHHcCCCHH----------------------------HHHHH
Confidence            8  8889999998877  322212          3344545555221                            23333


Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccC--hHHHHHH
Q 005581          552 YKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGG--FSRAVAI  602 (690)
Q Consensus       552 y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~--~~~ai~~  602 (690)
                      -..|=-.|++.         .+.++.-++-.||++.||+|+++.  .++++..
T Consensus       205 ~t~fGf~~g~~---------~L~d~~gfdv~eal~~gl~~~~~~r~~eel~~~  248 (380)
T KOG1683|consen  205 ITKFGFRVGER---------ALADGVGFDVAEALAVGLGDEIGPRIEEELLEK  248 (380)
T ss_pred             HHhcCccccHH---------HHhhccCccHHHHHhhccchhccchhHHHHHHH
Confidence            33333333333         367899999999999999999999  5666554

>cd07563 Peptidase_S41_IRBP Interphotoreceptor retinoid-binding protein; serine protease family S41

Probab=81.55  E-value=13  Score=38.66  Aligned_cols=117  Identities=20%  Similarity=0.152  Sum_probs=69.8

Q ss_pred             cCCeeEecchhHHHHHHHHHhCCCCCCCCCcccccccccccccccccCCCCCcEEEEEeecccccCCCCCCCCCcchHHH
Q 005581          337 EGFITNVLYDDEVISMLKERLGVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGE  416 (690)
Q Consensus       337 ~GLID~i~~~de~~~~l~~~~g~~~~~~~~~v~~~~y~~~~~~~~~~~~~~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~  416 (690)
                      .+.-+...+.+++.+.|.+.+..-.|+...+..                    |+.|++..-....        .....+
T Consensus        32 ~~~~~~~~~~~~l~~~l~~~l~~l~D~H~~~~~--------------------IgYl~i~~f~~~~--------~~~~~~   83 (250)
T cd07563          32 AQVYLDITSPEELAAVLTADLQELGDGHLNVSY--------------------IGYLRIDSFGGFE--------IAAAEA   83 (250)
T ss_pred             ccccccCCCHHHHHHHHHHhhhccCCCcEEEEE--------------------eEEEEEcccCChh--------hhhhHH
Confidence            333335567778877777766543343332221                    7777776643210        012234


Q ss_pred             HHHHHHHHHHhCCCceEEEEEcc-CCCcchhhhhHHHHHHHH-------------------------------hcCCCCE
Q 005581          417 QLIEKIRKVRESKRYKAAIIRID-SPGGDALASDLMWREIRL-------------------------------LSESKPV  464 (690)
Q Consensus       417 ~l~~~l~~a~~D~~VkaVVLrin-SpGG~~~as~~i~~~I~~-------------------------------l~~~KPV  464 (690)
                      .+.+.++++.+.   +++||.+- .+||....+..+...+..                               ...++||
T Consensus        84 ~~~~~~~~l~~~---~~LIIDLR~N~GG~~~~~~~l~s~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv  160 (250)
T cd07563          84 LLDEALDKLADT---DALIIDLRYNGGGSDSLVAYLASYFTDEDKPVHLYTIYKRPGNTTTELWTLPVVPGGRYGYTKPV  160 (250)
T ss_pred             HHHHHHHHhcCC---CeEEEEECCCCCCCHHHHHHHHHHcCCCCCcEEEEEEEECCCCCCcccceeeecCCCcccCCCCE
Confidence            555666666543   88898663 367776555444433320                               0125899


Q ss_pred             EEEECccccHHHHHHHHhcC
Q 005581          465 IASMSDVAASGGYYMAMAAG  484 (690)
Q Consensus       465 Va~v~g~AaSGGy~iA~aaD  484 (690)
                      ++.+++.++|+|=.++.+.-
T Consensus       161 ~vL~~~~T~SaaE~~a~~lk  180 (250)
T cd07563         161 YVLTSPVTFSAAEEFAYALK  180 (250)
T ss_pred             EEEeCCCcCcHHHHHHHHHH
Confidence            99999999999999999874

Interphotoreceptor retinoid-binding protein (IRBP) is a homolog of the S41 protease, C-terminal processing peptidase (CTPase) family. It is thought to facilitate the compartmentalization of the visual cycle that requires poorly soluble and potentially toxic retinoids to cross the aqueous subretinal space between the photoreceptors and the retinal pigment epithelium (RPE). IRBP is secreted by photoreceptors into the interphotoreceptor matrix (IPM) where it is rapidly turned over by a combination of RPE and photoreceptor endocytosis. It is the most abundant soluble protein component of the IPM, consisting of homologous modules, each repeat structure arising through the duplication (as in teleost IRBP) or quadruplication (in tetrapods) of an ancient gene, arisen in the early evolution of the vertebrate eye. IRBP has been shown to promote the release of all-trans retinol from photoreceptors

>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=80.57  E-value=1.6  Score=42.51  Aligned_cols=51  Identities=18%  Similarity=0.287  Sum_probs=35.0

Q ss_pred             CCCcEEEEEeecccccCCCCCCCCCcchH-HHHHHHHHHHHHhCCCceEEEEEccCCCcchhh
Q 005581          386 GGDQIAVIRASGSISRVRSPLSLSSSGII-GEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA  447 (690)
Q Consensus       386 ~~~~IAvI~i~G~I~~~~~~~~~~~~~~~-~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~a  447 (690)
                      .++++-|+..+|.|....        ... -+++...|.-|..+|   -||||..||||.+.+
T Consensus        96 ~~~r~~VldF~Gdi~A~~--------v~~LReeisail~~a~~~D---eV~~rLES~GG~Vh~  147 (155)
T PF08496_consen   96 PKPRLFVLDFKGDIKASE--------VESLREEISAILSVATPED---EVLVRLESPGGMVHG  147 (155)
T ss_pred             CCCeEEEEecCCCccHHH--------HHHHHHHHHHHHHhCCCCC---eEEEEEecCCceeec
Confidence            368999999999998421        112 344555555555443   589999999998754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane

>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation

Probab=80.37  E-value=7.9  Score=34.51  Aligned_cols=69  Identities=19%  Similarity=0.223  Sum_probs=50.2

Q ss_pred             CeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC-CCCCHHHHHHHHHHHHHHhhcCCeEEE
Q 005581          139 GSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-LSCGWGKVEEIRRHVVDFKKSGKFIIG  216 (690)
Q Consensus       139 ~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s-~Gg~~~~~~eI~~aI~~~r~sgKpVvA  216 (690)
                      +.+++++++|++....         ..++.+.+.......+.+.|+|++.. +--+.+....+.+..++++..|+.++-
T Consensus         9 ~~~~v~~l~G~L~~~~---------a~~~~~~l~~~~~~~~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l   78 (109)
T cd07041           9 DGVLVLPLIGDLDDER---------AEQLQERLLEAISRRRARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTIL   78 (109)
T ss_pred             CCEEEEeeeeeECHHH---------HHHHHHHHHHHHHHcCCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEE
Confidence            4588999999988643         45676666554443477899999965 446777788888888888877776653

The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	690
3bf0_A	593	Crystal Structure Of Escherichia Coli Signal Peptid		6e-34
3bez_A	593	Crystal Structure Of Escherichia Coli Signal Peptid		2e-29
3rst_A	240	Crystal Structure Of Bacillus Subtilis Signal Pepti		6e-15

>pdb|3BF0|A Chain A, Crystal Structure Of Escherichia Coli Signal Peptide Peptidase (Sppa), Native Crystals Length = 593

Iteration: 1
 Score =  142 bits (358), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 128/483 (26%), Positives = 211/483 (43%), Gaps = 27/483 (5%)
Query: 140 SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCG-WGKVE 198
           S L+ +L G  +D+L+       SL  I     +A  D  I GI + ++  + G    ++
Sbjct: 53  SKLSRQLLGASSDRLQEN-----SLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQ 107
Query: 199 EIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGV 258
            I + + +F+ SGK +        + +YYLA    +++  P     L+G      +   +
Sbjct: 108 YIGKALKEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSL 167
Query: 259 LEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE 318
           L+K+ +   V R+G YKSA +   R  MS    E  +  +  ++ N+L+ V++ +    E
Sbjct: 168 LDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAE 227
Query: 319 DI--------ERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGVQK-DKNLPMVD 369
            +        E     G    +   E   +  +    E+   L +  G  K DKN   + 
Sbjct: 228 QVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDKNYRAIS 287
Query: 370 YRKYSGVRRWTLGLTGGGDQIAVIRASGXXXXXXXXXXXXXXXXXXEQLIEKIRKVRESK 429
           Y  Y+     T   TG  D I V+ A+G                   Q    IR  R   
Sbjct: 288 YYDYA---LKTPADTG--DSIGVVFANGAIMDGEETQGNVGGDTTAAQ----IRDARLDP 338
Query: 430 RYKAAIIRIDSPGGDALASDLMWREIRLLSE-SKPVIASMSDVXXXXXXXXXXXXXTILA 488
           + KA ++R++SPGG   AS+++  E+       KPV+ SM  +              I+A
Sbjct: 339 KVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVA 398
Query: 489 ENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSA 548
              TLTGSIG+      +    + IG + + +S    A+V  +  R   P+   +   S 
Sbjct: 399 NPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADV--SITRALPPEAQLMMQLSI 456
Query: 549 QNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKAN 608
           +N YK F    A +R  T +++++ AQG VWTG DA + GLVD+LG F  AVA A + A 
Sbjct: 457 ENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAK 516
Query: 609 IPE 611
           + +
Sbjct: 517 VKQ 519

>pdb|3BEZ|A Chain A, Crystal Structure Of Escherichia Coli Signal Peptide Peptidase (Sppa), Semet Crystals Length = 593

Iteration: 1
 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 127/482 (26%), Positives = 205/482 (42%), Gaps = 29/482 (6%)
Query: 140 SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCG-WGKVE 198
           S L+ +L G  +D+L+       SL  I     +A  D  I GI   ++  + G     +
Sbjct: 53  SKLSRQLLGASSDRLQEN-----SLFDIVNTIRQAKDDRNITGIVXDLKNFAGGDQPSXQ 107
Query: 199 EIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGV 258
            I + + +F+ SGK +        + +YYLA    +++  P     L+G      +   +
Sbjct: 108 YIGKALKEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSL 167
Query: 259 LEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE 318
           L+K+ +   V R+G YKSA +   R   S    E  +  +  ++ N+L+ V++ +    E
Sbjct: 168 LDKLKVSTHVFRVGTYKSAVEPFIRDDXSPAAREADSRWIGELWQNYLNTVAANRQIPAE 227
Query: 319 DI--------ERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGVQK-DKNLPMVD 369
            +        E     G    +   E   +  +    E+   L +  G  K DKN   + 
Sbjct: 228 QVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDKNYRAIS 287
Query: 370 YRKYSGVRRWTLGLTGGGDQIAVIRASGXXXXXXXXXXXXXXXXXXEQLIEKIRKVRESK 429
           Y  Y+            GD I V+ A+G                   Q    IR  R   
Sbjct: 288 YYDYA-----LKTPADTGDSIGVVFANGAIXDGEETQGNVGGDTTAAQ----IRDARLDP 338
Query: 430 RYKAAIIRIDSPGGDALASDLMWREIRLLSE-SKPVIASMSDVXXXXXXXXXXXXXTILA 488
           + KA ++R++SPGG   AS+++  E+       KPV+ S                  I+A
Sbjct: 339 KVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSXGGXAASGGYWISTPANYIVA 398
Query: 489 ENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAK-S 547
              TLTGSIG+      +    + IG + + +S    A+V      P    EA+L  + S
Sbjct: 399 NPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALP---PEAQLXXQLS 455
Query: 548 AQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKA 607
            +N YK F    A +R  T +++++ AQG VWTG DA + GLVD+LG F  AVA A + A
Sbjct: 456 IENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELA 515
Query: 608 NI 609
            +
Sbjct: 516 KV 517

>pdb|3RST|A Chain A, Crystal Structure Of Bacillus Subtilis Signal Peptide Peptidase A Length = 240

Iteration: 1
 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 91/190 (47%), Gaps = 3/190 (1%)
Query: 418 LIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSES--KPVIASMSDVXXXX 475
            ++ + + ++ K  K  +++++SPGG    S  + +++  + +   KP+  SM  +    
Sbjct: 34  FLKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIHKKLEEIKKETKKPIYVSMGSMAASG 93
Query: 476 XXXXXXXXXTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRP 535
                     I A   TLTGS+GV+    N  KL +K+G + E I  G +A++++   R 
Sbjct: 94  GYYISTAADKIFATPETLTGSLGVIMESVNYSKLADKLGISFETIKSGAHADIMSP-SRE 152
Query: 536 FRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGG 595
              +E  +      N+Y+ F D  +  R M   ++++ A GRV+ G  A    LVD LG 
Sbjct: 153 MTKEEKNIMQSMVDNSYEGFVDVISKGRGMPKAEVKKIADGRVYDGRQAKKLNLVDELGF 212
Query: 596 FSRAVAIAKQ 605
           +   +   K+
Sbjct: 213 YDDTITAMKK 222

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	690
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	1e-154
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	4e-88
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	8e-13
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	4e-18
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A Length = 593

 Score =  457 bits (1177), Expect = e-154
 Identities = 131/564 (23%), Positives = 230/564 (40%), Gaps = 40/564 (7%)

Query: 134 ERVRKGSVLTMKLRGQIADQ----------------LKSRFSSGLSLPQICENFVKAAYD 177
           +       L + + G I D+                  S      SL  I     +A  D
Sbjct: 26  KETASRGALLLDISGVIVDKPDSSQRFSKLSRQLLGASSDRLQENSLFDIVNTIRQAKDD 85

Query: 178 PRIVGIYLHIEPLSCG-WGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELY 236
             I GI + ++  + G    ++ I + + +F+ SGK +        + +YYLA    +++
Sbjct: 86  RNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGENYSQGQYYLASFANKIW 145

Query: 237 APPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTA 296
             P     L+G      +   +L+K+ +   V R+G YKSA +   R  MS    E  + 
Sbjct: 146 LSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSR 205

Query: 297 LLDNIYGNWLDKVSSTKGKRKEDIERFIND--------GVYKVERLKEEGFITNVLYDDE 348
            +  ++ N+L+ V++ +    E +              G    +   E   +  +    E
Sbjct: 206 WIGELWQNYLNTVAANRQIPAEQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSAE 265

Query: 349 VISMLKERLGVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSL 408
           +   L +  G  K                         GD I V+ A+G+I         
Sbjct: 266 IEKALTKEFGWSKTDKNYRAISYYD----YALKTPADTGDSIGVVFANGAIMDGEE---- 317

Query: 409 SSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSES-KPVIAS 467
           +   + G+    +IR  R   + KA ++R++SPGG   AS+++  E+     + KPV+ S
Sbjct: 318 TQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVS 377

Query: 468 MSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAE 527
           M  +AASGGY+++  A  I+A   TLTGSIG+      +    + IG + + +S    A+
Sbjct: 378 MGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLAD 437

Query: 528 VLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASR 587
           V     R   P+   +   S +N YK F    A +R  T +++++ AQG VWTG DA + 
Sbjct: 438 VSIT--RALPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKAN 495

Query: 588 GLVDALGGFSRAVAIAKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAG-VDRTLK 646
           GLVD+LG F  AVA A + A + +     L           +++ ++  S+   +    +
Sbjct: 496 GLVDSLGDFDDAVAKAAELAKVKQWH---LEYYVDEPTFFDKVMDNMSGSVRAMLPDAFQ 552

Query: 647 ELLQDLTFSDGVQARMDGILFQRL 670
            +L     S     + +       
Sbjct: 553 AMLPAPLASVASTVKSESDKLAAF 576

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis} Length = 240

 Score =  274 bits (703), Expect = 4e-88
 Identities = 68/239 (28%), Positives = 120/239 (50%), Gaps = 6/239 (2%)

Query: 388 DQIAVIRASGSISRVRSPLSL-SSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDAL 446
            +IAV+  SG+I       SL  + G      ++ + + ++ K  K  +++++SPGG   
Sbjct: 3   SKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVY 62

Query: 447 ASDLMWREIRLLSES--KPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKF 504
            S  + +++  + +   KP+  SM  +AASGGYY++ AA  I A   TLTGS+GV+    
Sbjct: 63  ESAEIHKKLEEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESV 122

Query: 505 NLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRS 564
           N  KL +K+G + E I  G +A++++   R    +E  +      N+Y+ F D  +  R 
Sbjct: 123 NYSKLADKLGISFETIKSGAHADIMSP-SREMTKEEKNIMQSMVDNSYEGFVDVISKGRG 181

Query: 565 MTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKANIPEDRQVTLVEMSKP 623
           M   ++++ A GRV+ G  A    LVD LG +   +   K+     ++  V  +   + 
Sbjct: 182 MPKAEVKKIADGRVYDGRQAKKLNLVDELGFYDDTITAMKKDHKDLKNASV--ISYEES 238

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis} Length = 240

 Score = 67.7 bits (166), Expect = 8e-13
 Identities = 56/247 (22%), Positives = 109/247 (44%), Gaps = 33/247 (13%)

Query: 146 LRGQIADQLKSRFSSG---LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKV---EE 199
           + G I D   S    G    +     +N  +A  D  + GI L +   S G G V    E
Sbjct: 10  VSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVN--SPG-GGVYESAE 66

Query: 200 IRRHVVDFKK-SGKFII---GYVPVCGEKEYYLACACEELYAPPSAYFSLYGLT----VQ 251
           I + + + KK + K I    G +   G   YY++ A ++++A P        LT    V 
Sbjct: 67  IHKKLEEIKKETKKPIYVSMGSMAASGG--YYISTAADKIFATPET------LTGSLGVI 118

Query: 252 ASF--LGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKV 309
                   + +K+GI  +  + G +         + M++E   ++ +++DN Y  ++D +
Sbjct: 119 MESVNYSKLADKLGISFETIKSGAHADIMS--PSREMTKEEKNIMQSMVDNSYEGFVDVI 176

Query: 310 SSTKGKRKEDIERFINDG-VYKVERLKEEGFITNVLYDDEVISMLKERLGVQKDKNLPMV 368
           S  +G  K ++++ I DG VY   + K+   +  + + D+ I+ +K+     K+ ++  +
Sbjct: 177 SKGRGMPKAEVKK-IADGRVYDGRQAKKLNLVDELGFYDDTITAMKKDHKDLKNASV--I 233

Query: 369 DYRKYSG 375
            Y +  G
Sbjct: 234 SYEESFG 240

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A Length = 230

 Score = 83.1 bits (205), Expect = 4e-18
 Identities = 40/249 (16%), Positives = 73/249 (29%), Gaps = 56/249 (22%)

Query: 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDA 445
             + + V +  G I+               +Q    I    E    +A II +D+PGG A
Sbjct: 6   AKNIVYVAQIKGQITSYTY-----------DQFDRYITIA-EQDNAEAIIIELDTPGGRA 53

Query: 446 LASDLMWREI-RLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKF 504
            A   + + I +        +      AAS G Y+A+ +  I     T  G+   + G  
Sbjct: 54  DAMMNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYS 113

Query: 505 NLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRS 564
             G + E             Y + L A++       AE F                    
Sbjct: 114 QNGSIIEAPP--AITNYFIAYIKSL-AQESGRNATIAEEFI------------------- 151

Query: 565 MTVDKMEEYAQGRVWTGNDAASRGLVD-----------ALGGFSRAVAIAKQKANI-PED 612
                     +    T  +A   G+++              G    + +  +   +   +
Sbjct: 152 ---------TKDLSLTPEEALKYGVIEVVARDINELLKKSNGMKTKIPVNGRYVTLNFTN 202

Query: 613 RQVTLVEMS 621
            +V  +  S
Sbjct: 203 VEVRYLAPS 211

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 3e-07
 Identities = 75/582 (12%), Positives = 152/582 (26%), Gaps = 210/582 (36%)

Query: 180 IVGIYLH--IEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYA 237
           I+ ++    ++   C         + V D  K          +  ++E       + +  
Sbjct: 21  ILSVFEDAFVDNFDC---------KDVQDMPK---------SILSKEE------IDHIIM 56

Query: 238 PPSAYFSLYGL----------TVQASFLGGVLEK-----------VGIEPQVQRIGKYKS 276
              A      L           VQ  F+  VL                +P +     Y  
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEEMVQK-FVEEVLRINYKFLMSPIKTEQRQPSMMTR-MYIE 114

Query: 277 AGDQL------------TRKTMSEENCEMLTALLDN----IYG------NWLDKVSSTKG 314
             D+L            +R     +  + L  L       I G       W+        
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV--ALDVC- 171

Query: 315 KRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGVQKDKNLPMVDYRKYS 374
                ++  ++  ++ +        + N    + V+ ML ++L  Q D N          
Sbjct: 172 -LSYKVQCKMDFKIFWLN-------LKNCNSPETVLEML-QKLLYQIDPNW--------- 213

Query: 375 GVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAA 434
                    T   D  + I            L +         +  ++R++ +SK Y+  
Sbjct: 214 ---------TSRSDHSSNI-----------KLRI-------HSIQAELRRLLKSKPYENC 246

Query: 435 IIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLT 494
           ++ +          ++          +     +  +++             IL   LT T
Sbjct: 247 LLVLL---------NV-Q--------NAKAWNAF-NLSC-----------KIL---LT-T 272

Query: 495 GSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEV-LAAEQRPFRPDEA-ELFAKSAQNAY 552
               V                  + +S      + L        PDE   L  K      
Sbjct: 273 RFKQVT-----------------DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 553 K-------------------LFRDKAA---FSRSMTVDKMEEYAQGRVWTGNDAASRGLV 590
           +                     RD  A     + +  DK+    +  +     A  R + 
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 591 DALGGFSRAVAIAKQKANIPEDRQVTL-VEMSKPSPTLPEILSSVGNSIAGVDRTLKEL- 648
           D L  F  +        +IP      +  ++ K       +++ +      V++  KE  
Sbjct: 376 DRLSVFPPSA-------HIPTILLSLIWFDVIKSDV--MVVVNKLHKYSL-VEKQPKEST 425

Query: 649 --LQDLTFSDGVQARMDGILFQRLEEVACGNPILTLIKDYLS 688
             +  +     V+   +  L + +  V   N   T   D L 
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSI--VDHYNIPKTFDSDDLI 465

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 1e-05
 Identities = 61/475 (12%), Positives = 136/475 (28%), Gaps = 148/475 (31%)

Query: 70  SFDDSSSETKIQEPQQQ--AVVNEDYESRGKSKDEDEYPSGEFEYEK---FS-------- 116
           +  + +S   + E  Q+    ++ ++ SR       +      + E              
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 117 ----------AWKIFTVKLRMLV--------AFPWERVRKGSVLTMKLRGQIADQLKSRF 158
                     AW  F +  ++L+         F          L         D++KS  
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 159 SSGL-----SLP-QICENFVKAAYDPRIVGI---YLHIEPLSCGWGKVEEIRRHVVDFKK 209
              L      LP ++         +PR + I    +        W   +  +   V+  K
Sbjct: 308 LKYLDCRPQDLPREVLTT------NPRRLSIIAESIRDGL--ATW---DNWKH--VNCDK 354

Query: 210 SGKFI---IGYVPVCGEKEYYLACAC--EELYAPPSAYFSLYGLTVQASFLGGVLEKV-- 262
               I   +  +     ++ +   +      + P                   +L  +  
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI-----------------LLSLIWF 397

Query: 263 -GIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIE 321
             I+  V  +       ++L + ++ E+  +  T  + +IY   L+     K K + +  
Sbjct: 398 DVIKSDVMVV------VNKLHKYSLVEKQPKESTISIPSIY---LE----LKVKLENEYA 444

Query: 322 ---RFINDGVYKVER-LKEEGFITNVLYDDEVISM-----LKERLGVQKDKNLPMV--DY 370
                ++   Y + +    +  I    Y D+         LK     ++     MV  D+
Sbjct: 445 LHRSIVDH--YNIPKTFDSDDLIPP--YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500

Query: 371 RKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKR 430
                  R+ L           IR   +       +            +++++       
Sbjct: 501 -------RF-LE--------QKIRHDSTAWNASGSIL---------NTLQQLKF------ 529

Query: 431 YKAAIIRIDSPGGDALASDLM-----WREIRLLSESKPV--IASMSDVAASGGYY 478
           YK  I   D P  + L + ++       E  + S+   +  IA M++       +
Sbjct: 530 YKPYICDND-PKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAE---DEAIF 580

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	690
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	99.87
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	99.85
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	99.85
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	99.84
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	99.83
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	99.83
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	99.83
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	99.81
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	99.81
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	99.79
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	99.78
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	99.77
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	99.77
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	99.74
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	99.73
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	99.69
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	99.68
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	99.66
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	99.65
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	99.63
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	99.6
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	99.6
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	99.53
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	99.52
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	99.51
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	99.51
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	99.51
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	99.5
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	99.49
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	99.46
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	99.46
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	99.45
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	99.44
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	99.41
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	99.39
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	99.36
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	99.35
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	99.34
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	99.32
d1on3a1	253	Methylmalonyl-CoA carboxyltransferase (transcarbox	98.04
d2a7sa1	258	Propionyl-CoA carboxylase complex B subunit, PccB	98.02
d2f9yb1	263	Acetyl-coenzyme A carboxylase carboxyl transferase	97.99
d1xnya1	258	Propionyl-CoA carboxylase complex B subunit, PccB	97.9
d1vrga1	251	Propionyl-CoA carboxylase complex B subunit, PccB	97.82
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	97.63
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	97.55
d1pixa2	287	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	97.22
d1xnya2	263	Propionyl-CoA carboxylase complex B subunit, PccB	97.03
d2f9yb1	263	Acetyl-coenzyme A carboxylase carboxyl transferase	96.93
d1xnya2	263	Propionyl-CoA carboxylase complex B subunit, PccB	96.52
d1vrga2	264	Propionyl-CoA carboxylase complex B subunit, PccB	96.12
d2a7sa2	271	Propionyl-CoA carboxylase complex B subunit, PccB	95.61
d2a7sa2	271	Propionyl-CoA carboxylase complex B subunit, PccB	95.45
d1vrga2	264	Propionyl-CoA carboxylase complex B subunit, PccB	95.27
d1pixa2	287	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	94.86
d1uyra1	333	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	94.46
d1on3a1	253	Methylmalonyl-CoA carboxyltransferase (transcarbox	93.45
d1on3a2	264	Methylmalonyl-CoA carboxyltransferase (transcarbox	92.96
d1uyra2	404	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	92.13
d1on3a2	264	Methylmalonyl-CoA carboxyltransferase (transcarbox	91.76
d2csua2	161	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	91.65
d1pixa3	299	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	90.05
d1pixa3	299	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	88.81
d1th8b_	115	Anti-sigma factor antagonist SpoIIaa {Bacillus ste	85.51
d1oi7a2	167	Succinyl-CoA synthetase, alpha-chain, C-terminal d	83.38
d1vc1a_	110	Anti-sigma factor antagonist SpoIIaa {Thermotoga m	81.87

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.87  E-value=2.4e-22  Score=157.53  Aligned_cols=220  Identities=16%  Similarity=0.125  Sum_probs=143.4

Q ss_pred             CCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCC----CCCHHHH--H-----------
Q ss_conf             9857999952110368887878883017999999999988079956899981699----9514431--6-----------
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSP----GGDALAS--D-----------  449 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~VkaVVLrinSp----GG~~~as--~-----------  449 (690)
                      +++|+.|++++|-..      |+.+..+..+|.+.++++.+|+++|+|||+.+.+    ||..+++  +           
T Consensus        27 ~~gi~~ItlnRP~~~------NAl~~~m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~~f~ag~Dl~~~~~~~~~~  100 (297)
T d1q52a_          27 DDATVRVAFNRPEVR------NAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQY  100 (297)
T ss_dssp             SSSEEEEEECCGGGT------TCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC------------
T ss_pred             CCCEEEEEECCCCCC------CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCHHHHHCCCCCCC
T ss_conf             099899997788867------89899999999999999972999657999668876552566554201134430233222


Q ss_pred             -----------------HHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHCCEEEEECCC-EECC----CCCCCCCCCH
Q ss_conf             -----------------889999986-1999799998860117999999763957870675-0001----2442466654
Q 005581          450 -----------------LMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLT-LTGS----IGVVTGKFNL  506 (690)
Q Consensus       450 -----------------~i~~~i~~~-~~~KPVIA~i~g~AaSGGy~iA~aaD~IvA~p~t-~~GS----IGV~~~~~~~  506 (690)
                                       .+.+.+..+ ..+|||||.|+|.|.+||+.|+++||.+++.+.+ .++.    +|+++.....
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GGG~~lal~~D~~ia~~~~~~f~~pe~~~Gl~p~~~~~  180 (297)
T d1q52a_         101 ASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGS  180 (297)
T ss_dssp             -----------------CHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCGGGGTCCCCSTTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEECCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCC
T ss_conf             33443100356788888899999999852983999972416641105555443020012432100001013654223454


Q ss_pred             HHHHHHCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHH
Q ss_conf             77998709832123043014553203999995699999999999999999999841399998999986498655887987
Q 005581          507 GKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAAS  586 (690)
Q Consensus       507 ~~l~~klGv~~~~i~~g~~k~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~~~~i~~Grv~tg~eAle  586 (690)
                      ..+...+|..                                                   ...+.+++|+.++|++|++
T Consensus       181 ~~L~r~iG~~---------------------------------------------------~a~~llltg~~~~a~eA~~  209 (297)
T d1q52a_         181 AYLARQVGQK---------------------------------------------------FAREIFFLGRTYTAEQMHQ  209 (297)
T ss_dssp             HHHHHHHCHH---------------------------------------------------HHHHHHHHCCEECHHHHHH
T ss_pred             CCCCCCCCCC---------------------------------------------------CEEECCCCCCCCCHHHHHH
T ss_conf             1210246752---------------------------------------------------0010212232444676654


Q ss_pred             CCCCCCCCCHHHHH----HHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHCCCCCHHCHHHHHHHHHHHCCCCCCHHHHC
Q ss_conf             69764215958999----99999908999983489981499999888871226640108999999998426872022503
Q 005581          587 RGLVDALGGFSRAV----AIAKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVDRTLKELLQDLTFSDGVQARM  662 (690)
Q Consensus       587 ~GLVD~ig~~~~ai----~~a~~~a~l~~~~~v~~~~~~~~k~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~qa~~  662 (690)
                      +||||++.+.++..    +.++++++.++.      .+...|..+.....+...............+.+.++.+|++||+
T Consensus       210 ~Glv~~vv~~~el~~~~~~~a~~l~~~~~~------a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~Egv~AF~  283 (297)
T d1q52a_         210 MGAVNAVAEHAELETVGLQWAAEINAKSPQ------AQRMLKFAFNLLDDGLVGQQLFAGEATRLAYMTDEAVEGRDAFL  283 (297)
T ss_dssp             HTSCSEEECGGGHHHHHHHHHHHHHTSCHH------HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             HCCCCCCCCHHHHHHHHHHHHHHHCCCCHH------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             124324676577667788876654147799------99999999997462869999999999999856988999999985


Q ss_pred             CCCCHHH
Q ss_conf             7311688
Q 005581          663 DGILFQR  669 (690)
Q Consensus       663 ~~~~~~~  669 (690)
                      +...|.|
T Consensus       284 eKR~P~f  290 (297)
T d1q52a_         284 QKRPPDW  290 (297)
T ss_dssp             TTSCCCC
T ss_pred             CCCCCCC
T ss_conf             8999799

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=99.85  E-value=3.8e-21  Score=149.85  Aligned_cols=221  Identities=17%  Similarity=0.111  Sum_probs=141.8

Q ss_pred             CCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC----CCCCHHHH--------------
Q ss_conf             985799995211036888787888301799999999998807995689998169----99514431--------------
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDS----PGGDALAS--------------  448 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~VkaVVLrinS----pGG~~~as--------------  448 (690)
                      +++|++|+++.|-..      |+.+..+..+|.+.++.+.+|+++++|||+.+.    .|++....              
T Consensus        10 ~dgVa~Itlnrp~~~------Nal~~~~~~el~~~l~~~~~d~~i~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   83 (269)
T d1nzya_          10 EDGVAEITIKLPRHR------NALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHFR   83 (269)
T ss_dssp             ETTEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHHH
T ss_pred             ECCEEEEEECCCCCC------CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCHHHHHH
T ss_conf             899999997688867------89899999999999999985899169999677433330226988752235431035777


Q ss_pred             ---HHHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHCCEEEEECCCEECC----CCCCCCCCCHHHHHHHCCCCEEEE
Q ss_conf             ---6889999986-19997999988601179999997639578706750001----244246665477998709832123
Q 005581          449 ---DLMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEII  520 (690)
Q Consensus       449 ---~~i~~~i~~~-~~~KPVIA~i~g~AaSGGy~iA~aaD~IvA~p~t~~GS----IGV~~~~~~~~~l~~klGv~~~~i  520 (690)
                         ....+.+..+ ..+|||||.|+|.|.+||+.|+++||.+++++.+.++.    +|+.+.......+.          
T Consensus        84 ~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~~~~~g~~~~~g~~~~l~----------  153 (269)
T d1nzya_          84 IAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLA----------  153 (269)
T ss_dssp             HHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHH----------
T ss_pred             HHHHHHHHHHHHHHHHCCHHEHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC----------
T ss_conf             8888888999999863020023655524787323320461766525421102233233333333433210----------


Q ss_pred             CCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHH
Q ss_conf             04301455320399999569999999999999999999984139999899998649865588798769764215958999
Q 005581          521 SRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAV  600 (690)
Q Consensus       521 ~~g~~k~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~~~~i~~Grv~tg~eAle~GLVD~ig~~~~ai  600 (690)
                                                          ..+...+     ..+.+++|+.++|++|+++||||++.+.+++.
T Consensus       154 ------------------------------------~~ig~~~-----a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~  192 (269)
T d1nzya_         154 ------------------------------------RIVGMRR-----AMELMLTNRTLYPEEAKDWGLVSRVYPKDEFR  192 (269)
T ss_dssp             ------------------------------------HHHHHHH-----HHHHHHHCCCBCHHHHHHHTSCSCEECHHHHH
T ss_pred             ------------------------------------CCCCHHH-----HHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCC
T ss_conf             ------------------------------------0357155-----55302423332045898729751234433332


Q ss_pred             HHHH----HHCCCCCCCCEEEEEECCCCCCHHHHHHCCCCCHHC-HHHHHHHHHHHCCCCCCHHHHCCCCCHHHH
Q ss_conf             9999----990899998348998149999988887122664010-899999999842687202250373116888
Q 005581          601 AIAK----QKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAG-VDRTLKELLQDLTFSDGVQARMDGILFQRL  670 (690)
Q Consensus       601 ~~a~----~~a~l~~~~~v~~~~~~~~k~~~~~~l~~~~~~~~~-~~~~~~~l~~~~~~~~~~qa~~~~~~~~~~  670 (690)
                      +.+.    ++++.++.      .+...|..+............. ........+.+.+..+++++|+.+..++|-
T Consensus       193 ~~a~~~a~~la~~~~~------a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~e~v~aflekrkp~~~  261 (269)
T d1nzya_         193 EVAWKVARELAAAPTH------LQVMAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCLTRFLDGHRADRP  261 (269)
T ss_dssp             HHHHHHHHHHHHSCHH------HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHSTTHHHHHHHHHTTCCTTCC
T ss_pred             CCHHHHHHHHHHHHHH------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCC
T ss_conf             2003344555542477------79999999999872899999999999999984698999999999778997958

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=99.85  E-value=1.3e-21  Score=152.88  Aligned_cols=219  Identities=16%  Similarity=0.095  Sum_probs=138.0

Q ss_pred             CCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC----CCCCHHHH-------HH-----
Q ss_conf             985799995211036888787888301799999999998807995689998169----99514431-------68-----
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDS----PGGDALAS-------DL-----  450 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~VkaVVLrinS----pGG~~~as-------~~-----  450 (690)
                      +++|+.|++ .+-.      .|+.+..+..+|.+.++++.+|++||+|||+.+.    .|++....       +.     
T Consensus        17 ~~gV~~itl-rp~~------~Nal~~~m~~el~~~~~~~~~d~~vr~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~   89 (263)
T d1wz8a1          17 RPGVLEITF-RGEK------LNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRASHEALLRVF   89 (263)
T ss_dssp             ETTEEEEEE-CCSG------GGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHHHHCHHHHHHHH
T ss_pred             CCCEEEEEE-CCCC------CCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCH
T ss_conf             897899997-9988------788899999999999999961999749999635432222100223331012333322102


Q ss_pred             --HHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHCCEEEEECCCEECC----CCCCCCCCCHHHHHHHCCCCEEEECCC
Q ss_conf             --89999986-19997999988601179999997639578706750001----244246665477998709832123043
Q 005581          451 --MWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRG  523 (690)
Q Consensus       451 --i~~~i~~~-~~~KPVIA~i~g~AaSGGy~iA~aaD~IvA~p~t~~GS----IGV~~~~~~~~~l~~klGv~~~~i~~g  523 (690)
                        +.+.+..+ ..+|||||.|+|.|.+||+.|+++||.+++++.+.++.    +|+++.......+...+|.        
T Consensus        90 ~~~~~~~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~~G~--------  161 (263)
T d1wz8a1          90 WEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGM--------  161 (263)
T ss_dssp             HHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCH--------
T ss_pred             HHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------
T ss_conf             456677877653101023211344566544421121010123334332223332333322333345422221--------


Q ss_pred             CHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHH-
Q ss_conf             0145532039999956999999999999999999998413999989999864986558879876976421595899999-
Q 005581          524 KYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAI-  602 (690)
Q Consensus       524 ~~k~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~~~~i~~Grv~tg~eAle~GLVD~ig~~~~ai~~-  602 (690)
                                                            .     ...+.+++|+.++|++|+++||||++.+.+++.+. 
T Consensus       162 --------------------------------------~-----~a~~l~l~g~~i~a~eA~~~Glv~~vv~~~~l~~~a  198 (263)
T d1wz8a1         162 --------------------------------------A-----KAKYHLLLNEPLTGEEAERLGLVALAVEDEKVYEKA  198 (263)
T ss_dssp             --------------------------------------H-----HHHHHHHHTCCEEHHHHHHHTSSSEEECGGGHHHHH
T ss_pred             --------------------------------------C-----HHHHHCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf             --------------------------------------0-----133320221101146887517752223200225778


Q ss_pred             ---HHHHCCCCCCCCEEEEEECCCCCCHHHHHHCCCCCHHCHHHHHHHHHHHCCCCCCHHHHCCCCCHHH
Q ss_conf             ---9999089999834899814999998888712266401089999999984268720225037311688
Q 005581          603 ---AKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVDRTLKELLQDLTFSDGVQARMDGILFQR  669 (690)
Q Consensus       603 ---a~~~a~l~~~~~v~~~~~~~~k~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~qa~~~~~~~~~  669 (690)
                         ++++++.++.      .+...|..+.....................+.+.+..+|++||+....|.|
T Consensus       199 ~~~a~~la~~~~~------al~~~K~~l~~~~~~~~~~~~~e~~~~~~~~~s~d~~Egi~Af~eKR~P~f  262 (263)
T d1wz8a1         199 LEVAERLAQGPKE------ALHHTKHALNHWYRSFLPHFELSLALEFLGFSGKELEEGLKALKEKRPPEF  262 (263)
T ss_dssp             HHHHHHHHTSCHH------HHHHHHHHHHHHHHTTHHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHCCHHH------HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC
T ss_conf             9999886200899------999999999998768399999999999987049889999999828999999

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.8e-21  Score=151.95  Aligned_cols=219  Identities=18%  Similarity=0.182  Sum_probs=141.0

Q ss_pred             CCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCC-----CCCHHH------------HHH
Q ss_conf             857999952110368887878883017999999999988079956899981699-----951443------------168
Q 005581          388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSP-----GGDALA------------SDL  450 (690)
Q Consensus       388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~VkaVVLrinSp-----GG~~~a------------s~~  450 (690)
                      ++|++|+++.|-..      |+.+..+.+++.+.++.+..|+++++|||+.+.+     |++...            ...
T Consensus        14 ~gI~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~~~~~~~~~~~~~   87 (266)
T d1hzda_          14 RGIVVLGINRAYGK------NSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSK   87 (266)
T ss_dssp             TTEEEEEECCGGGT------TCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCC------CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             98899996899877------999999999999999999749886368872366443046532111111111012234567


Q ss_pred             HHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHCCEEEEECCCEECC----CCCCCCCCCHHHHHHHCCCCEEEECCCCH
Q ss_conf             89999986-19997999988601179999997639578706750001----24424666547799870983212304301
Q 005581          451 MWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKY  525 (690)
Q Consensus       451 i~~~i~~~-~~~KPVIA~i~g~AaSGGy~iA~aaD~IvA~p~t~~GS----IGV~~~~~~~~~l~~klGv~~~~i~~g~~  525 (690)
                      +.+.++.+ ..+|||||.|+|.|.+||+.|+++||+++|++++.+|.    +|+++.......+..++|..         
T Consensus        88 ~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~ig~~---------  158 (266)
T d1hzda_          88 IRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMS---------  158 (266)
T ss_dssp             HHHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHH---------
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCEEEECCCCEEEECCCCEEECCCCCCEEEEHHHHHHH---------
T ss_conf             77888887428742001112334455521024543356447868740345552247745402323456777---------


Q ss_pred             HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHH----HHHH
Q ss_conf             455320399999569999999999999999999984139999899998649865588798769764215958----9999
Q 005581          526 AEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFS----RAVA  601 (690)
Q Consensus       526 k~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~~~~i~~Grv~tg~eAle~GLVD~ig~~~----~ai~  601 (690)
                                                                ...+.+++|+.+++++|+++||||++.+.+    ++++
T Consensus       159 ------------------------------------------~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~~~~  196 (266)
T d1hzda_         159 ------------------------------------------LAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYR  196 (266)
T ss_dssp             ------------------------------------------HHHHHHHHTCEEEHHHHHHHTSCSEEECCCTTSCHHHH
T ss_pred             ------------------------------------------HHHHHHCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf             ------------------------------------------87766423772477885223432333570665557788


Q ss_pred             HHHHHCC----CCCCCCEEEEEECCCCCCHHHHHHCCCCCHHCHH-HHHHHHHHHCCCCCCHHHHCCCCCHHH
Q ss_conf             9999908----9999834899814999998888712266401089-999999984268720225037311688
Q 005581          602 IAKQKAN----IPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQR  669 (690)
Q Consensus       602 ~a~~~a~----l~~~~~v~~~~~~~~k~~~~~~l~~~~~~~~~~~-~~~~~l~~~~~~~~~~qa~~~~~~~~~  669 (690)
                      .+.+++.    .++.      .+...|..+...+..........+ ......+.+.+..+|++||+....|.|
T Consensus       197 ~a~~~a~~i~~~~p~------a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~f  263 (266)
T d1hzda_         197 KALDLAREFLPQGPV------AMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRY  263 (266)
T ss_dssp             HHHHHHHTTTTSCHH------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTTSCCCC
T ss_pred             HHHHHHHHCCCCCHH------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC
T ss_conf             889999850357869------9999999999875089999999999999998579999999999958999999

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=99.84  E-value=2.7e-21  Score=150.81  Aligned_cols=218  Identities=16%  Similarity=0.141  Sum_probs=136.5

Q ss_pred             CCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCC----CCCHHHH--------------
Q ss_conf             9857999952110368887878883017999999999988079956899981699----9514431--------------
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSP----GGDALAS--------------  448 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~VkaVVLrinSp----GG~~~as--------------  448 (690)
                      +++|++|++++|-..      |+.+..+..++.+.++++.+|+++++|||+.+.+    |++....              
T Consensus         6 ~G~va~Itlnrp~~~------Nal~~~~~~el~~~l~~~~~d~~v~~vvl~g~g~~f~aG~dl~~~~~~~~~~~~~~~~~   79 (253)
T d1uiya_           6 KGHVAVVFLNDPERR------NPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRH   79 (253)
T ss_dssp             CSSEEEEEECCGGGT------CCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHH
T ss_pred             ECCEEEEEECCCCCC------CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCCCH
T ss_conf             499999998588867------89999999999999999972999649999666432221110677630234575311000


Q ss_pred             -HHHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHCCEEEEECCCEECCCCCCCCCCCH---HHHHHHCCCCEEEECCC
Q ss_conf             -6889999986-199979999886011799999976395787067500012442466654---77998709832123043
Q 005581          449 -DLMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNL---GKLYEKIGFNKEIISRG  523 (690)
Q Consensus       449 -~~i~~~i~~~-~~~KPVIA~i~g~AaSGGy~iA~aaD~IvA~p~t~~GSIGV~~~~~~~---~~l~~klGv~~~~i~~g  523 (690)
                       ..+...+..+ ..+|||||.|+|.|.+||+.|+++||++++++.+.++...+..+.+..   ..+...           
T Consensus        80 ~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~e~~~g~~~~~~~~~l~~~-----------  148 (253)
T d1uiya_          80 SLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALVSVILVRA-----------  148 (253)
T ss_dssp             HHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCHHHHHHHHHH-----------
T ss_pred             HHHHHHHHHHHHCCCCCEEEEECEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCC-----------
T ss_conf             133321456876189788997372873262798762016566466677643122222222100121112-----------


Q ss_pred             CHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf             014553203999995699999999999999999999841399998-9999864986558879876976421595899999
Q 005581          524 KYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVD-KMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAI  602 (690)
Q Consensus       524 ~~k~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~-~~~~i~~Grv~tg~eAle~GLVD~ig~~~~ai~~  602 (690)
                                                               +... ..+.+++|+.+++++|+++||||++.+.++..+.
T Consensus       149 -----------------------------------------~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~  187 (253)
T d1uiya_         149 -----------------------------------------VGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGKALEE  187 (253)
T ss_dssp             -----------------------------------------SCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECTTCHHHH
T ss_pred             -----------------------------------------CCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCHH
T ss_conf             -----------------------------------------479999987624857779999972887522332111016


Q ss_pred             HHHHC----CCCCCCCEEEEEECCCCCCHHHHHHCCCCCHHCHHHHH-HHHHHHCCCCCCHHHHCCCCCHH
Q ss_conf             99990----89999834899814999998888712266401089999-99998426872022503731168
Q 005581          603 AKQKA----NIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVDRTL-KELLQDLTFSDGVQARMDGILFQ  668 (690)
Q Consensus       603 a~~~a----~l~~~~~v~~~~~~~~k~~~~~~l~~~~~~~~~~~~~~-~~l~~~~~~~~~~qa~~~~~~~~  668 (690)
                      +.+++    ..++.      .+...|..+.+.........+..+... ...+.+.+..+|++||+....|+
T Consensus       188 a~~~a~~~~~~~~~------a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~af~eKR~P~  252 (253)
T d1uiya_         188 AKALAEEVAKNAPT------SLRLTKELLLALPGMGLEDGFRLAALANAWVRETGDLAEGIRAFFEKRPPR  252 (253)
T ss_dssp             HHHHHHHHHHSCHH------HHHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHCCCCHH------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC
T ss_conf             78887752010169------999999999973459999999999999999867999999999982899999

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=2.3e-21  Score=151.30  Aligned_cols=220  Identities=18%  Similarity=0.174  Sum_probs=140.8

Q ss_pred             CCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC----CCCCHHHH------HHHH----
Q ss_conf             985799995211036888787888301799999999998807995689998169----99514431------6889----
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDS----PGGDALAS------DLMW----  452 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~VkaVVLrinS----pGG~~~as------~~i~----  452 (690)
                      ++.|++|+++.|-..      |+.+..+..+|.+.++++.+|+++++|||+.+.    .|++....      ....    
T Consensus        14 ~~~I~~itlnrP~~~------Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   87 (260)
T d1mj3a_          14 NSSVGLIQLNRPKAL------NALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFL   87 (260)
T ss_dssp             GGCEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCHHHHHHC--C
T ss_pred             CCCEEEEEECCCCCC------CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHCCCHHHHHHHHHH
T ss_conf             799899998089867------89999999999999999975988655898135433332101666521212456678999


Q ss_pred             HHHHHH-CCCCCEEEEECCCCCHHHHHHHHHCCEEEEECCCEECC----CCCCCCCCCHHHHHHHCCCCEEEECCCCHHH
Q ss_conf             999986-19997999988601179999997639578706750001----2442466654779987098321230430145
Q 005581          453 REIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKYAE  527 (690)
Q Consensus       453 ~~i~~~-~~~KPVIA~i~g~AaSGGy~iA~aaD~IvA~p~t~~GS----IGV~~~~~~~~~l~~klGv~~~~i~~g~~k~  527 (690)
                      +.+..+ ..+|||||.++|.|.+||+.|+++||.++|++.+.++.    +|+++.......+...+|..           
T Consensus        88 ~~~~~~~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~ig~~-----------  156 (260)
T d1mj3a_          88 SHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKS-----------  156 (260)
T ss_dssp             CGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHH-----------
T ss_pred             HHHHHHCCCCCEEEEEECCEEEHHHHHHHHHCCEEEECCCCEEECCHHCCCCCCCCCHHHHHHHHHCHH-----------
T ss_conf             998874149986999983757198899999799999749988988511607687504999999973899-----------


Q ss_pred             HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHH----HHH
Q ss_conf             5320399999569999999999999999999984139999899998649865588798769764215958999----999
Q 005581          528 VLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAV----AIA  603 (690)
Q Consensus       528 ~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~~~~i~~Grv~tg~eAle~GLVD~ig~~~~ai----~~a  603 (690)
                                                              ...+.+++|+.++++||+++||||++...++..    ..+
T Consensus       157 ----------------------------------------~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a  196 (260)
T d1mj3a_         157 ----------------------------------------LAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCA  196 (260)
T ss_dssp             ----------------------------------------HHHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHH
T ss_pred             ----------------------------------------HHHHHHHCCCCCCCHHHCCCCCCEEEECCCCCCCCCCCCC
T ss_conf             ----------------------------------------9999998196627433235897326510122233333332


Q ss_pred             HHHCCCCCCCCEEEEEECCCCCCHHHHHHCCCCCHHCHH-HHHHHHHHHCCCCCCHHHHCCCCCHHH
Q ss_conf             999089999834899814999998888712266401089-999999984268720225037311688
Q 005581          604 KQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQR  669 (690)
Q Consensus       604 ~~~a~l~~~~~v~~~~~~~~k~~~~~~l~~~~~~~~~~~-~~~~~l~~~~~~~~~~qa~~~~~~~~~  669 (690)
                      .+++..++.      .+...|..+..............+ ......+.+.+..+|+++|+....|+|
T Consensus       197 ~~i~~~~~~------a~~~~K~~l~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egi~aFleKR~P~f  257 (260)
T d1mj3a_         197 EKIANNSKI------IVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANF  257 (260)
T ss_dssp             HHHHHSCHH------HHHHHHHHHHGGGSSCHHHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCC
T ss_pred             CCCCCHHHH------HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC
T ss_conf             222100367------9999999999987089999999999999998479999999999968999999

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=1.1e-20  Score=146.99  Aligned_cols=221  Identities=15%  Similarity=0.134  Sum_probs=139.7

Q ss_pred             CCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC----CCCCHHHHH-------------
Q ss_conf             985799995211036888787888301799999999998807995689998169----995144316-------------
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDS----PGGDALASD-------------  449 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~VkaVVLrinS----pGG~~~as~-------------  449 (690)
                      +++|+.|+++.|-..      |+.+..+..+|.+.++.+.+|+++++|||+.+.    .|++.....             
T Consensus        11 ~~~I~~itlnrP~~~------Nals~~m~~el~~~l~~~~~d~~v~~vvltg~~~~F~aG~dl~~~~~~~~~~~~~~~~~   84 (275)
T d1dcia_          11 QKHVLHVQLNRPEKR------NAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDDVAR   84 (275)
T ss_dssp             ETTEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSSHHH
T ss_pred             CCCEEEEEECCCCCC------CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCC
T ss_conf             598899997489988------99999999999999999973999669999544665356715888621113443321110


Q ss_pred             ----------HHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHCCEEEEECCCEECC----CCCCCCCCCHHHHHHHCC
Q ss_conf             ----------889999986-19997999988601179999997639578706750001----244246665477998709
Q 005581          450 ----------LMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIG  514 (690)
Q Consensus       450 ----------~i~~~i~~~-~~~KPVIA~i~g~AaSGGy~iA~aaD~IvA~p~t~~GS----IGV~~~~~~~~~l~~klG  514 (690)
                                .+.+.+..+ ..+|||||.|+|.|.+||+.|+++||.+++++++.++.    +|+++.......+...+|
T Consensus        85 ~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~~~~~~~~~~~g  164 (275)
T d1dcia_          85 IAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIG  164 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGGGTCS
T ss_pred             HHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEHHHHHHHHHCCCHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCC
T ss_conf             25442010012478899988659979999801854245998763374334367643210012243100133333433245


Q ss_pred             CCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH-HHHHCCCCCCHHHHHHCCCCCCC
Q ss_conf             83212304301455320399999569999999999999999999984139999899-99864986558879876976421
Q 005581          515 FNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKM-EEYAQGRVWTGNDAASRGLVDAL  593 (690)
Q Consensus       515 v~~~~i~~g~~k~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~~-~~i~~Grv~tg~eAle~GLVD~i  593 (690)
                                                                         ..... +.+.+|+.+++++|+++||||++
T Consensus       165 ---------------------------------------------------~~~~~~~ll~~g~~~~a~eA~~~Glv~~v  193 (275)
T d1dcia_         165 ---------------------------------------------------NRSLVNELTFTARKMMADEALDSGLVSRV  193 (275)
T ss_dssp             ---------------------------------------------------CHHHHHHHHHHCCEEEHHHHHHHTSSSEE
T ss_pred             ---------------------------------------------------CCCCCCCCCCCCCCCCHHHHCCCCCCEEE
T ss_conf             ---------------------------------------------------43332221124333354565047974044


Q ss_pred             CCHHH-HHHH----HHHHCCCCCCCCEEEEEECCCCCCHHHHHHCCCCCHHC-HHHHHHHHHHHCCCCCCHHHHCCCCCH
Q ss_conf             59589-9999----99990899998348998149999988887122664010-899999999842687202250373116
Q 005581          594 GGFSR-AVAI----AKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAG-VDRTLKELLQDLTFSDGVQARMDGILF  667 (690)
Q Consensus       594 g~~~~-ai~~----a~~~a~l~~~~~v~~~~~~~~k~~~~~~l~~~~~~~~~-~~~~~~~l~~~~~~~~~~qa~~~~~~~  667 (690)
                      .+.++ ....    +.+++..++.      .+...|..+............. ......+++.+.+..+|++||+....+
T Consensus       194 ~~~~~~l~~~~~~~a~~i~~~~p~------a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~Egi~AfleKR~p  267 (275)
T d1dcia_         194 FPDKDVMLNAAFALAADISSKSPV------AVQGSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDS  267 (275)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHSCHH------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSHHHHHHHHHHHTTCCG
T ss_pred             EEHHHHHHHCCCCCCCCCCCCCHH------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC
T ss_conf             201233200022222222446589------99999999998754999999999999999981799999999999678998


Q ss_pred             HHH
Q ss_conf             888
Q 005581          668 QRL  670 (690)
Q Consensus       668 ~~~  670 (690)
                      .|.
T Consensus       268 k~~  270 (275)
T d1dcia_         268 KSI  270 (275)
T ss_dssp             GGC
T ss_pred             CCC
T ss_conf             999

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.83  E-value=2.2e-19  Score=138.60  Aligned_cols=168  Identities=18%  Similarity=0.191  Sum_probs=121.0

Q ss_pred             CCCEEEEEEE-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC----CCCCHHHH---------H---
Q ss_conf             9857999952-11036888787888301799999999998807995689998169----99514431---------6---
Q 005581          387 GDQIAVIRAS-GSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDS----PGGDALAS---------D---  449 (690)
Q Consensus       387 ~~~IAvI~i~-G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~VkaVVLrinS----pGG~~~as---------~---  449 (690)
                      +++|++|+++ .+-.      .|+.+..+.++|.+.++.+..|+++++|||+.+.    .|++....         +   
T Consensus        14 ~~gva~i~ln~~p~~------~Nal~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~   87 (310)
T d1wdka4          14 ESGIVELKFDLKGES------VNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDAELIA   87 (310)
T ss_dssp             GGGEEEEEECCTTSS------SCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSSBBCCCHHHHHHHTTSCHHHHHH
T ss_pred             CCCEEEEEECCCCCC------CCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCHHHHH
T ss_conf             398899998989834------67899999999999999998489956999978998741001156665201010011223


Q ss_pred             ---HHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHCCEEEEECCCEECC----CCCCCCCCCHHHHHHHCCCCEEEEC
Q ss_conf             ---889999986-19997999988601179999997639578706750001----2442466654779987098321230
Q 005581          450 ---LMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIIS  521 (690)
Q Consensus       450 ---~i~~~i~~~-~~~KPVIA~i~g~AaSGGy~iA~aaD~IvA~p~t~~GS----IGV~~~~~~~~~l~~klGv~~~~i~  521 (690)
                         .+.+.+..+ ..+||||+.|+|.|.+||+.|+++||++++++.+.+|.    +|+++.......+...+|..     
T Consensus        88 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~elal~cD~ria~~~a~f~~pe~~~Gl~P~~gg~~~L~r~iG~~-----  162 (310)
T d1wdka4          88 GNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVD-----  162 (310)
T ss_dssp             HHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHH-----
T ss_pred             HHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHH-----
T ss_conf             236788998886328811110003445444432210024310364335416622458776544203544324554-----


Q ss_pred             CCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHH
Q ss_conf             43014553203999995699999999999999999999841399998999986498655887987697642159589999
Q 005581          522 RGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVA  601 (690)
Q Consensus       522 ~g~~k~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~~~~i~~Grv~tg~eAle~GLVD~ig~~~~ai~  601 (690)
                                                                    ...+.+++|+.+++++|+++||||++.+.++..+
T Consensus       163 ----------------------------------------------~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~  196 (310)
T d1wdka4         163 ----------------------------------------------NAVEWIASGKENRAEDALKVSAVDAVVTADKLGA  196 (310)
T ss_dssp             ----------------------------------------------HHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHH
T ss_pred             ----------------------------------------------HHHHHHCCCCCCCHHHHHHCCCCCEECCHHHHHH
T ss_conf             ----------------------------------------------5566530245668999952267507716899999


Q ss_pred             ----HHHHHCCCCC
Q ss_conf             ----9999908999
Q 005581          602 ----IAKQKANIPE  611 (690)
Q Consensus       602 ----~a~~~a~l~~  611 (690)
                          .+++++..+.
T Consensus       197 ~a~~~a~~~~~~~~  210 (310)
T d1wdka4         197 AALDLIKRAISGEL  210 (310)
T ss_dssp             HHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHCCC
T ss_conf             99999999875254

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=1.6e-20  Score=145.83  Aligned_cols=221  Identities=14%  Similarity=0.161  Sum_probs=139.3

Q ss_pred             CCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC------CCCCHHH-----------HH
Q ss_conf             985799995211036888787888301799999999998807995689998169------9951443-----------16
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDS------PGGDALA-----------SD  449 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~VkaVVLrinS------pGG~~~a-----------s~  449 (690)
                      ++.|++|+++.|-..      |+.+..+..+|.+.+.++. ++++++|||+..+      .|++...           .+
T Consensus        11 ~~~v~~Itlnrp~~~------Nal~~~~~~~l~~al~~~~-~~~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~~~~~~~~   83 (261)
T d1ef8a_          11 INKVAVIEFNYGRKL------NALSKVFIDDLMQALSDLN-RPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDD   83 (261)
T ss_dssp             ETTEEEEEECCGGGT------TCCCHHHHHHHHHHHHHTC-STTCCEEEEECCTTCSEEECCSCSTTC-----CTTCTTS
T ss_pred             ECCEEEEEECCCCCC------CCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf             999999997487777------9999999999999999974-799779997201231111244222222357753100013


Q ss_pred             HHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHCCEEEEECCCEECCCCC-CCCCCCHHHHHHHCCCCEEEECCCCHHH
Q ss_conf             889999986-19997999988601179999997639578706750001244-2466654779987098321230430145
Q 005581          450 LMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGV-VTGKFNLGKLYEKIGFNKEIISRGKYAE  527 (690)
Q Consensus       450 ~i~~~i~~~-~~~KPVIA~i~g~AaSGGy~iA~aaD~IvA~p~t~~GSIGV-~~~~~~~~~l~~klGv~~~~i~~g~~k~  527 (690)
                      .+.+.++.+ ..+|||||.|+|.|.+||+.|+++||.+++.+.+.+|...+ ++..+......                 
T Consensus        84 ~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~~~~pe~~~Gl~~~~~~~~-----------------  146 (261)
T d1ef8a_          84 PLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIH-----------------  146 (261)
T ss_dssp             HHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHH-----------------
T ss_pred             CHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-----------------
T ss_conf             025667788757600210243201010134333234410467677765422434223332222-----------------


Q ss_pred             HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH-HHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHH-
Q ss_conf             5320399999569999999999999999999984139999899-99864986558879876976421595899999999-
Q 005581          528 VLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKM-EEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQ-  605 (690)
Q Consensus       528 ~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~~-~~i~~Grv~tg~eAle~GLVD~ig~~~~ai~~a~~-  605 (690)
                                                      ...|.+..... +.+++|+.++++||+++||||++.+.++..+.+.+ 
T Consensus       147 --------------------------------~l~r~~g~~~a~~~~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~  194 (261)
T d1ef8a_         147 --------------------------------NLTRDAGFHIVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQM  194 (261)
T ss_dssp             --------------------------------TTSSSSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHHH
T ss_pred             --------------------------------CCCCCCCCCCCCCCCCCCCEECHHHHHHCCCCCEEEECHHHHHHHHHH
T ss_conf             --------------------------------232356763211222447627699998709952452002210126889


Q ss_pred             ---HCCCCCCCCEEEEEECCCCCCHHHHHHCCCCCHHCHH---HHHHHHHHHCCCCCCHHHHCCCCCHHH
Q ss_conf             ---9089999834899814999998888712266401089---999999984268720225037311688
Q 005581          606 ---KANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD---RTLKELLQDLTFSDGVQARMDGILFQR  669 (690)
Q Consensus       606 ---~a~l~~~~~v~~~~~~~~k~~~~~~l~~~~~~~~~~~---~~~~~l~~~~~~~~~~qa~~~~~~~~~  669 (690)
                         ++..++.      .+...|..+..............+   .....++.+.+..+|++||++...|.|
T Consensus       195 a~~la~~~~~------a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~D~~Egi~AfleKR~P~f  258 (261)
T d1ef8a_         195 AHHISEKAPL------AIAVIKEELRVLGEAHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPNF  258 (261)
T ss_dssp             HHHHTTSCHH------HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHCCCH------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC
T ss_conf             9999853827------799999999998735824599999999999998379999999999848999969

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=99.81  E-value=6.6e-19  Score=135.58  Aligned_cols=164  Identities=18%  Similarity=0.141  Sum_probs=116.9

Q ss_pred             CCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC-----CCCCHHH------HH------
Q ss_conf             985799995211036888787888301799999999998807995689998169-----9951443------16------
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDS-----PGGDALA------SD------  449 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~VkaVVLrinS-----pGG~~~a------s~------  449 (690)
                      .++|++|+++.|-..      |+.+..+..++.+.++++.+|+++|+|||+.+.     .|++...      .+      
T Consensus         7 ~d~I~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~   80 (230)
T d2a7ka1           7 SDEVRVITLDHPNKH------NPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWI   80 (230)
T ss_dssp             ETTEEEEEECCSSTT------CBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHH
T ss_pred             CCCEEEEEECCCCCC------CCCCHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHCCCCCCCCCCCCCCCCCCH
T ss_conf             599999997688777------99999999999999999973976430000002104554320232122333233322110


Q ss_pred             -HHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHCCEEEEECCCEECC----CCCCCCCCCHHHHHHHCCCCEEEECCC
Q ss_conf             -889999986-19997999988601179999997639578706750001----244246665477998709832123043
Q 005581          450 -LMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRG  523 (690)
Q Consensus       450 -~i~~~i~~~-~~~KPVIA~i~g~AaSGGy~iA~aaD~IvA~p~t~~GS----IGV~~~~~~~~~l~~klGv~~~~i~~g  523 (690)
                       .+.+.++.+ ..+|||||.|+|.|.+||+.|+++||.++|++.+.++.    +|+++... ...+...+|.        
T Consensus        81 ~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g-~~~l~~~iG~--------  151 (230)
T d2a7ka1          81 DRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVG-AAILGFTHGF--------  151 (230)
T ss_dssp             HHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHH-HHHHHHHHCH--------
T ss_pred             HHHHHHHHCCCCHHCCEEEECCCCCCCCCCCCHHCCCHHHCCCCCHHHHCCCCCCCCCCCC-CCCCCCCCCC--------
T ss_conf             1100000002000000001100245554422000111100013213330123233333222-2333322222--------


Q ss_pred             CHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf             01455320399999569999999999999999999984139999899998649865588798769764215958999999
Q 005581          524 KYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIA  603 (690)
Q Consensus       524 ~~k~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~~~~i~~Grv~tg~eAle~GLVD~ig~~~~ai~~a  603 (690)
                                                            .+     ..+.+++|+.++|++|+++||||++.+.+++.+.+
T Consensus       152 --------------------------------------~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a  188 (230)
T d2a7ka1         152 --------------------------------------ST-----MQEIIYQCQSLDAPRCVDYRLVNQVVESSALLDAA  188 (230)
T ss_dssp             --------------------------------------HH-----HHHHHHHCCCBCHHHHHHHTCCSEEECHHHHHHHH
T ss_pred             --------------------------------------CC-----CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf             --------------------------------------23-----33433466540389999864034579858999999


Q ss_pred             HHHCC
Q ss_conf             99908
Q 005581          604 KQKAN  608 (690)
Q Consensus       604 ~~~a~  608 (690)
                      .+++.
T Consensus       189 ~~~a~  193 (230)
T d2a7ka1         189 ITQAH  193 (230)
T ss_dssp             HHHHH
T ss_pred             HHHHH
T ss_conf             99999

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.9e-19  Score=138.99  Aligned_cols=217  Identities=12%  Similarity=0.066  Sum_probs=135.8

Q ss_pred             CCCEEEEEEE-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC----CCCCHHHH-------------
Q ss_conf             9857999952-11036888787888301799999999998807995689998169----99514431-------------
Q 005581          387 GDQIAVIRAS-GSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDS----PGGDALAS-------------  448 (690)
Q Consensus       387 ~~~IAvI~i~-G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~VkaVVLrinS----pGG~~~as-------------  448 (690)
                      +++|+.|+++ .|-.      .|+.+..+.++|.+.+.++..| ++++|||+.+.    .|++....             
T Consensus         9 ~~gi~~i~l~~rp~~------~Nals~~~~~el~~al~~~~~d-~~~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~   81 (258)
T d2fw2a1           9 EDGFTQIVLSTRSTE------KNALNTEVIKEMVNALNSAAAD-DSKLVLFSAAGSVFCCGLDFGYFVRHLRNDRNTASL   81 (258)
T ss_dssp             ETTEEEEEECCSSSS------TTCBCHHHHHHHHHHHHHHHHS-SCSEEEEEECSSCSBCCBCHHHHHHHHHHCHHHHHH
T ss_pred             ECCEEEEEECCCCCC------CCCCCHHHHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCCHHHHCCCCCCCCHHH
T ss_conf             899899998889744------6898999999999999998719-977999955742102343211111001221110246


Q ss_pred             ---HHHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHCCEEEEECCCEECC----CCCCCCCCCHHHHHHHCCCCEEEE
Q ss_conf             ---6889999986-19997999988601179999997639578706750001----244246665477998709832123
Q 005581          449 ---DLMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEII  520 (690)
Q Consensus       449 ---~~i~~~i~~~-~~~KPVIA~i~g~AaSGGy~iA~aaD~IvA~p~t~~GS----IGV~~~~~~~~~l~~klGv~~~~i  520 (690)
                         +.+.+.+..+ ..+|||||.|+|.|.+||+.++++||.+++++.+.++.    +|+++.......+...+|.     
T Consensus        82 ~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ig~-----  156 (258)
T d2fw2a1          82 EMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGK-----  156 (258)
T ss_dssp             HHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCH-----
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCEECCCCEEECCCCCCCCCCCCCCCCCHHHCCC-----
T ss_conf             777788999876310210134200344545543323344400210133212022336643453333310555186-----


Q ss_pred             CCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHH
Q ss_conf             04301455320399999569999999999999999999984139999899998649865588798769764215958999
Q 005581          521 SRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAV  600 (690)
Q Consensus       521 ~~g~~k~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~~~~i~~Grv~tg~eAle~GLVD~ig~~~~ai  600 (690)
                                                               .     ...+.+++|+.++|++|+++||||++.+.+++.
T Consensus       157 -----------------------------------------~-----~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~  190 (258)
T d2fw2a1         157 -----------------------------------------A-----SANEMLIAGRKLTAREACAKGLVSQVFLTGTFT  190 (258)
T ss_dssp             -----------------------------------------H-----HHHHHHTTCCEEEHHHHHHTTSCSEEECSTTHH
T ss_pred             -----------------------------------------C-----CCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             -----------------------------------------3-----301021147643212212333321245533233


Q ss_pred             H----HHHHHCCCCCCCCEEEEEECCCCCCHHHHHHCCCCCHHCHH-HHHHHHHHHCCCCCCHHHHCCCCCH
Q ss_conf             9----99999089999834899814999998888712266401089-9999999842687202250373116
Q 005581          601 A----IAKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILF  667 (690)
Q Consensus       601 ~----~a~~~a~l~~~~~v~~~~~~~~k~~~~~~l~~~~~~~~~~~-~~~~~l~~~~~~~~~~qa~~~~~~~  667 (690)
                      +    .+++++..++.      .+...|..+..............+ .....++.+.+..+|++||+....|
T Consensus       191 ~~a~~~a~~i~~~~~~------a~~~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~Egi~af~EKR~p  256 (258)
T d2fw2a1         191 QEVMIQIKELASYNAI------VLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVENKID  256 (258)
T ss_dssp             HHHHHHHHHHTTSCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHSSCC
T ss_pred             CCCCHHHHHHHHHHHH------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC
T ss_conf             3221034555543378------99999999997502899999999999999995799999999999678998

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=7.6e-18  Score=128.83  Aligned_cols=163  Identities=13%  Similarity=0.094  Sum_probs=116.2

Q ss_pred             CCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC----CCCCHHHH--------------
Q ss_conf             985799995211036888787888301799999999998807995689998169----99514431--------------
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDS----PGGDALAS--------------  448 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~VkaVVLrinS----pGG~~~as--------------  448 (690)
                      +++|+.|+++.|-..      |+.+..+..++.+.++.+.+|+.+ +||+....    .|++....              
T Consensus        10 ~~gi~~Itlnrp~~~------Nals~~~~~~l~~~l~~~~~d~~v-~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   82 (245)
T d2f6qa1          10 EDGITKIMFNRPKKK------NAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKN   82 (245)
T ss_dssp             ETTEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHHHHHHH
T ss_pred             ECCEEEEEECCCCCC------CCCCHHHHHHHHHHHHHHHCCCCE-EEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCH
T ss_conf             899999997687767------898999999999999998639866-8863688852457863021001332333210100


Q ss_pred             --HHHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHCCEEEEECCCEECC----CCCCCCCCCHHHHHHHCCCCEEEEC
Q ss_conf             --6889999986-19997999988601179999997639578706750001----2442466654779987098321230
Q 005581          449 --DLMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIIS  521 (690)
Q Consensus       449 --~~i~~~i~~~-~~~KPVIA~i~g~AaSGGy~iA~aaD~IvA~p~t~~GS----IGV~~~~~~~~~l~~klGv~~~~i~  521 (690)
                        ....+.++.+ ..+|||||.|+|.|.+||+.++++||.+++++.+.++.    +|+++.......+..++|.      
T Consensus        83 ~~~~~~~~~~~i~~~~kpvIa~v~G~a~GgG~~la~~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~g~------  156 (245)
T d2f6qa1          83 NAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSP------  156 (245)
T ss_dssp             HHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCH------
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHCCCCCCC------
T ss_conf             23577777766440478637877784334555300002465552067684653457878652212223521122------


Q ss_pred             CCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHH
Q ss_conf             43014553203999995699999999999999999999841399998999986498655887987697642159589999
Q 005581          522 RGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVA  601 (690)
Q Consensus       522 ~g~~k~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~~~~i~~Grv~tg~eAle~GLVD~ig~~~~ai~  601 (690)
                                                              .     ...+.+++|+.|+|++|+++||||++.+.++..+
T Consensus       157 ----------------------------------------~-----~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~  191 (245)
T d2f6qa1         157 ----------------------------------------A-----KATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQK  191 (245)
T ss_dssp             ----------------------------------------H-----HHHHHHTTCCCEEHHHHHHTTSCSEEECTTTHHH
T ss_pred             ----------------------------------------C-----HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             ----------------------------------------0-----2232202565422222123223224577306899


Q ss_pred             HHHHHC
Q ss_conf             999990
Q 005581          602 IAKQKA  607 (690)
Q Consensus       602 ~a~~~a  607 (690)
                      .+.+++
T Consensus       192 ~a~~~a  197 (245)
T d2f6qa1         192 EVWTRL  197 (245)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
T ss_conf             999999

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.77  E-value=4.7e-18  Score=130.16  Aligned_cols=167  Identities=18%  Similarity=0.245  Sum_probs=115.8

Q ss_pred             CCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCC-----CCCHHH--------H----H
Q ss_conf             9857999952110368887878883017999999999988079956899981699-----951443--------1----6
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSP-----GGDALA--------S----D  449 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~VkaVVLrinSp-----GG~~~a--------s----~  449 (690)
                      .++|++|+++.|-.       |+.+..+.+++.+.++.+.+|+++++|||+.+++     |++...        .    .
T Consensus        11 ~~gIa~itln~p~~-------Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~~Fs~G~Dl~~~~~~~~~~~~~~~~   83 (249)
T d1sg4a1          11 GAGVAVMKFKNPPV-------NSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWK   83 (249)
T ss_dssp             TTTEEEEEECCTTT-------TEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCC-------CCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCH
T ss_conf             99889999789986-------88999999999999999972999668999853430674265433221345332211110


Q ss_pred             HHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHCCEEEEECCCEE--CC----CCCCCCCCCHHHHHHHCCCCEEEECC
Q ss_conf             889999986-199979999886011799999976395787067500--01----24424666547799870983212304
Q 005581          450 LMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLT--GS----IGVVTGKFNLGKLYEKIGFNKEIISR  522 (690)
Q Consensus       450 ~i~~~i~~~-~~~KPVIA~i~g~AaSGGy~iA~aaD~IvA~p~t~~--GS----IGV~~~~~~~~~l~~klGv~~~~i~~  522 (690)
                      .+.+.++.+ ..+|||||.|+|.|.+||+.|+++||+++|++++.+  |.    +|+++.......+..++|.       
T Consensus        84 ~~~~~~~~l~~~~kpvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~pe~~~Gl~p~~g~~~~l~~~iG~-------  156 (249)
T d1sg4a1          84 AVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGH-------  156 (249)
T ss_dssp             HHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCH-------
T ss_pred             HHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------
T ss_conf             2578877530376320000102354444332111241112013321121234444433322112122223342-------


Q ss_pred             CCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHH--
Q ss_conf             301455320399999569999999999999999999984139999899998649865588798769764215958999--
Q 005581          523 GKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAV--  600 (690)
Q Consensus       523 g~~k~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~~~~i~~Grv~tg~eAle~GLVD~ig~~~~ai--  600 (690)
                                                             .+     ..+.+++|+.++|++|+++||||++.+.++..  
T Consensus       157 ---------------------------------------~~-----a~~lll~g~~~~a~~A~~~Glv~~v~~~~~l~~~  192 (249)
T d1sg4a1         157 ---------------------------------------RA-----AERALQLGLLFPPAEALQVGIVDQVVPEEQVQST  192 (249)
T ss_dssp             ---------------------------------------HH-----HHHHHHHTCCBCHHHHHHHTSSSEEECGGGHHHH
T ss_pred             ---------------------------------------CC-----CCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHH
T ss_conf             ---------------------------------------21-----2222234654207888753244125785899999


Q ss_pred             --HHHHHHCCCCC
Q ss_conf             --99999908999
Q 005581          601 --AIAKQKANIPE  611 (690)
Q Consensus       601 --~~a~~~a~l~~  611 (690)
                        +++++++..++
T Consensus       193 a~~~a~~l~~~~~  205 (249)
T d1sg4a1         193 ALSAIAQWMAIPD  205 (249)
T ss_dssp             HHHHHHHHHTSCH
T ss_pred             HHHHHHHHHCCCH
T ss_conf             9999999975999

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=5.9e-18  Score=129.54  Aligned_cols=153  Identities=14%  Similarity=0.026  Sum_probs=110.1

Q ss_pred             CCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECC----CCCCCHHHH--------------
Q ss_conf             98579999521103688878788830179999999999880799568999816----999514431--------------
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS--------------  448 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~VkaVVLrin----SpGG~~~as--------------  448 (690)
                      +++|++|+++.|-..      |+.+..+..++.+.++++.+|++|++|||+.+    |.|++....              
T Consensus        12 ~~~v~~Itlnrp~~~------Na~~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~   85 (266)
T d1pjha_          12 EGPFFIIHLINPDNL------NALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSE   85 (266)
T ss_dssp             ETTEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------CCSSH
T ss_pred             ECCEEEEEECCCCCC------CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCH
T ss_conf             999999997688867------89999999999999999984999619999566421033500999972223432122101


Q ss_pred             ---------HHHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHCCEEEEEC-CCEECC----CCCCCCCCCHHHHHHHC
Q ss_conf             ---------6889999986-19997999988601179999997639578706-750001----24424666547799870
Q 005581          449 ---------DLMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAEN-LTLTGS----IGVVTGKFNLGKLYEKI  513 (690)
Q Consensus       449 ---------~~i~~~i~~~-~~~KPVIA~i~g~AaSGGy~iA~aaD~IvA~p-~t~~GS----IGV~~~~~~~~~l~~kl  513 (690)
                               ....+.+..+ ..+|||||.|+|.|.+||+.|+++||.++|.+ ++.+|.    +|+++.......+...+
T Consensus        86 ~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~~lGl~p~~g~~~~l~r~~  165 (266)
T d1pjha_          86 TSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKF  165 (266)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             26789999998999999999663224256421354534221001102233100111222233322232222222222222


Q ss_pred             CCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCC
Q ss_conf             98321230430145532039999956999999999999999999998413999989999864986558879876976421
Q 005581          514 GFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDAL  593 (690)
Q Consensus       514 Gv~~~~i~~g~~k~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~~~~i~~Grv~tg~eAle~GLVD~i  593 (690)
                      |.                                              .+     ..+.+++|+.+++++|+++||||++
T Consensus       166 g~----------------------------------------------~~-----a~~llltg~~~~a~eA~~~Glv~~v  194 (266)
T d1pjha_         166 GT----------------------------------------------NT-----TYECLMFNKPFKYDIMCENGFISKN  194 (266)
T ss_dssp             CH----------------------------------------------HH-----HHHHHHTTCCEEHHHHHHTTCCSEE
T ss_pred             CC----------------------------------------------CH-----HHHHHCCCCCCCHHHHHHCCCEEEE
T ss_conf             11----------------------------------------------01-----2334244886789999977997676


Q ss_pred             CCH
Q ss_conf             595
Q 005581          594 GGF  596 (690)
Q Consensus       594 g~~  596 (690)
                      ...
T Consensus       195 ~~~  197 (266)
T d1pjha_         195 FNM  197 (266)
T ss_dssp             CCC
T ss_pred             ECC
T ss_conf             386

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=99.74  E-value=3.6e-17  Score=124.48  Aligned_cols=163  Identities=15%  Similarity=0.083  Sum_probs=114.8

Q ss_pred             CCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC----CCCCHHH--------HHH----
Q ss_conf             985799995211036888787888301799999999998807995689998169----9951443--------168----
Q 005581          387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDS----PGGDALA--------SDL----  450 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~VkaVVLrinS----pGG~~~a--------s~~----  450 (690)
                      +++|++|+++.|-..      |..+..+..++.+.++++.+|+++++|||+.+.    .|++...        ...    
T Consensus        20 ~~~v~~itln~p~~~------Nal~~~~~~el~~al~~~~~d~~v~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~   93 (249)
T d1szoa_          20 DGGVLLVTVHTEGKS------LVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLGTPHDWDEIIFE   93 (249)
T ss_dssp             ETTEEEEEECBTTBS------CEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCSSHHHHHHHHHH
T ss_pred             ECCEEEEEECCCCCC------CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHH
T ss_conf             899999997888746------79999999999999999974988645765124432233201455422443200122222


Q ss_pred             HHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHCCEEEEECCCEE-CC----CCCCCCCCCHHHHHHHCCCCEEEECCCC
Q ss_conf             89999986-199979999886011799999976395787067500-01----2442466654779987098321230430
Q 005581          451 MWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLT-GS----IGVVTGKFNLGKLYEKIGFNKEIISRGK  524 (690)
Q Consensus       451 i~~~i~~~-~~~KPVIA~i~g~AaSGGy~iA~aaD~IvA~p~t~~-GS----IGV~~~~~~~~~l~~klGv~~~~i~~g~  524 (690)
                      ..+.++.+ ..+||||+.++|.|.+ |..++++||.+++.+.+.+ +.    +|+++.......+...+|.         
T Consensus        94 ~~~l~~~i~~~~~pvIa~v~g~~~G-G~~l~l~~D~ria~~~a~f~~~pe~~~g~~p~~g~~~~l~r~ig~---------  163 (249)
T d1szoa_          94 GQRLLNNLLSIEVPVIAAVNGPVTN-APEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGS---------  163 (249)
T ss_dssp             HHHHHHHHHHCCSCEEEEECSCBCS-STHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCH---------
T ss_pred             HHHHHHHCCCCCCCCEEEECCCCCC-CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC---------
T ss_conf             1000000014764311222133321-123333333232368867987403344323554332233233672---------


Q ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf             14553203999995699999999999999999999841399998-99998649865588798769764215958999999
Q 005581          525 YAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVD-KMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIA  603 (690)
Q Consensus       525 ~k~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~-~~~~i~~Grv~tg~eAle~GLVD~ig~~~~ai~~a  603 (690)
                                                                 . ..+.+++|+.|++++|+++||||++.+.+++.+.+
T Consensus       164 -------------------------------------------~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a  200 (249)
T d1szoa_         164 -------------------------------------------NRGRYFLLTGQELDARTALDYGAVNEVLSEQELLPRA  200 (249)
T ss_dssp             -------------------------------------------HHHHHHHHTTCEEEHHHHHHHTSCSEEECHHHHHHHH
T ss_pred             -------------------------------------------CCEEEECCCCCCCCHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf             -------------------------------------------1012101367777778999829967666878999999


Q ss_pred             HHHCC
Q ss_conf             99908
Q 005581          604 KQKAN  608 (690)
Q Consensus       604 ~~~a~  608 (690)
                      .+++.
T Consensus       201 ~~~a~  205 (249)
T d1szoa_         201 WELAR  205 (249)
T ss_dssp             HHHHH
T ss_pred             HHHHH
T ss_conf             99999

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=1e-16  Score=121.64  Aligned_cols=160  Identities=17%  Similarity=0.247  Sum_probs=125.8

Q ss_pred             EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             99952110368887878883017999999999988079956899981699951443168899999861999799998860
Q 005581          392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV  471 (690)
Q Consensus       392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~VkaVVLrinSpGG~~~as~~i~~~i~~~~~~KPVIA~i~g~  471 (690)
                      +|.+.|+|..           .+...++..+..+..++..+-|.|.+|||||++.....|++.++..  +.||++.+.|.
T Consensus        18 iI~l~g~I~~-----------~~~~~~i~~l~~l~~~~~~~~I~l~InS~GG~v~~g~~i~d~i~~~--~~~v~tv~~G~   84 (183)
T d1yg6a1          18 VIFLTGQVED-----------HMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFI--KPDVSTICMGQ   84 (183)
T ss_dssp             EEEEESSBCH-----------HHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHS--SSCEEEEEEEE
T ss_pred             EEEECCEECH-----------HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHC--CCCEEEEEEEE
T ss_conf             8998979877-----------9999999999876640567762899848986188899999999757--99989999877


Q ss_pred             CCHHHHHHHHHCC--EEEEECCCEECCCCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             1179999997639--57870675000124424666547799870983212304301455320399999569999999999
Q 005581          472 AASGGYYMAMAAG--TILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQ  549 (690)
Q Consensus       472 AaSGGy~iA~aaD--~IvA~p~t~~GSIGV~~~~~~~~~l~~klGv~~~~i~~g~~k~~~~~~~~~~s~~~~~~~~~~i~  549 (690)
                      |+|.|..|.++|+  ++++.|++.+....+...                  ..|...++             +...+.++
T Consensus        85 aaS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~------------------~~G~~~~i-------------~~~~~~~~  133 (183)
T d1yg6a1          85 AASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGG------------------YQGQATDI-------------EIHAREIL  133 (183)
T ss_dssp             EETHHHHHHHTSCTTCEEECTTCEEEECCCEEE------------------EEEEHHHH-------------HHHHHHHH
T ss_pred             EHHHHHHHHHCCCCCCEEECCCCEEEECCCCCC------------------CCCCHHHH-------------HHHHHHHH
T ss_conf             588779999767877544679862786055516------------------66679999-------------99999999


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHCCCCC-CHHHHHHCCCCCCCCC
Q ss_conf             999999999984139999899998649865-5887987697642159
Q 005581          550 NAYKLFRDKAAFSRSMTVDKMEEYAQGRVW-TGNDAASRGLVDALGG  595 (690)
Q Consensus       550 ~~y~~F~~~Va~~R~~~~~~~~~i~~Grv~-tg~eAle~GLVD~ig~  595 (690)
                      .....+.+..++..+++.+++++......| +++||+++||||+|..
T Consensus       134 ~~~~~~~~~~~~~tg~~~e~i~~~~~~d~~lta~EAl~~GliD~Ii~  180 (183)
T d1yg6a1         134 KVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILT  180 (183)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHTSSCEEEEHHHHHHHTSSSEECC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEEC
T ss_conf             99999989999987969999998741682365999998599858834

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.69  E-value=1e-15  Score=115.32  Aligned_cols=160  Identities=16%  Similarity=0.165  Sum_probs=125.2

Q ss_pred             EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             99952110368887878883017999999999988079956899981699951443168899999861999799998860
Q 005581          392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV  471 (690)
Q Consensus       392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~VkaVVLrinSpGG~~~as~~i~~~i~~~~~~KPVIA~i~g~  471 (690)
                      +|.+.|+|.+           .+...++..+..+...+.-+-|-|.||||||++.+.-.|++.++..  +-||++...|.
T Consensus        28 iifl~g~I~~-----------~~~~~~i~~l~~l~~~~~~~~I~l~InS~GG~v~~g~~i~d~i~~~--~~~V~tv~~G~   94 (193)
T d1tg6a1          28 IVCVMGPIDD-----------SVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYI--LNPICTWCVGQ   94 (193)
T ss_dssp             EEEEESSBCH-----------HHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHS--CSCEEEEEEEE
T ss_pred             EEEECCEECH-----------HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH--CCCEEEEECCC
T ss_conf             8987988861-----------7899999999874335778379999606966177789999999862--67528998160


Q ss_pred             CCHHHHHHHHHCCE--EEEECCCEECCCCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             11799999976395--7870675000124424666547799870983212304301455320399999569999999999
Q 005581          472 AASGGYYMAMAAGT--ILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQ  549 (690)
Q Consensus       472 AaSGGy~iA~aaD~--IvA~p~t~~GSIGV~~~~~~~~~l~~klGv~~~~i~~g~~k~~~~~~~~~~s~~~~~~~~~~i~  549 (690)
                      |+|.|..|.++|++  +++.|++.+......++.                  .|             ...+.+...+.++
T Consensus        95 aaS~a~~il~aG~~g~R~~~pns~~miHq~~~~~------------------~G-------------~~~di~~~~~el~  143 (193)
T d1tg6a1          95 AASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGA------------------RG-------------QATDIAIQAEEIM  143 (193)
T ss_dssp             EETHHHHHHHTSCTTCEEECTTCEEEECCCCCCC------------------CS-------------SHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCC------------------CC-------------CHHHHHHHHHHHH
T ss_conf             4787789966176675045864298831776578------------------86-------------9999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHCCCC-CCHHHHHHCCCCCCCCC
Q ss_conf             99999999998413999989999864986-55887987697642159
Q 005581          550 NAYKLFRDKAAFSRSMTVDKMEEYAQGRV-WTGNDAASRGLVDALGG  595 (690)
Q Consensus       550 ~~y~~F~~~Va~~R~~~~~~~~~i~~Grv-~tg~eAle~GLVD~ig~  595 (690)
                      ...+.+.+..++.-|++.++++...+... ++++||+++||||+|..
T Consensus       144 ~~~~~i~~i~a~~Tg~~~~~i~~~~~rD~~lta~EAl~yGliD~Ii~  190 (193)
T d1tg6a1         144 KLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLV  190 (193)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHSSCEEECHHHHHHHTSCSEECS
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEECC
T ss_conf             99999899999871998999998742685277999998399988725

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.68  E-value=1e-15  Score=115.27  Aligned_cols=160  Identities=19%  Similarity=0.178  Sum_probs=116.3

Q ss_pred             EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             99952110368887878883017999999999988079956899981699951443168899999861999799998860
Q 005581          392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV  471 (690)
Q Consensus       392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~VkaVVLrinSpGG~~~as~~i~~~i~~~~~~KPVIA~i~g~  471 (690)
                      +|.+.|+|..           .+...++..|..+..++..+-|.|.+|||||++.+...|++.++..  +.||++.+.|.
T Consensus        15 ii~l~g~I~~-----------~~~~~~i~~l~~l~~~~~~~~I~l~InS~GG~v~~gl~i~d~i~~~--~~~v~t~~~G~   81 (179)
T d2cbya1          15 IIFLGSEVND-----------EIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLA--PCDIATYAMGM   81 (179)
T ss_dssp             EEEECSCBCH-----------HHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHC--SSCEEEEEEEE
T ss_pred             EEEECCEECH-----------HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH--CCCEEEEHHHH
T ss_conf             9998987878-----------9999999999997466999728999517878777899999999852--64315645531


Q ss_pred             CCHHHHHHHHHCC--EEEEECCCEECCCCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             1179999997639--57870675000124424666547799870983212304301455320399999569999999999
Q 005581          472 AASGGYYMAMAAG--TILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQ  549 (690)
Q Consensus       472 AaSGGy~iA~aaD--~IvA~p~t~~GSIGV~~~~~~~~~l~~klGv~~~~i~~g~~k~~~~~~~~~~s~~~~~~~~~~i~  549 (690)
                      |+|.|..|.++|+  ++++.|++.+..+.+....                  .|.             ..+.+...+.++
T Consensus        82 aaS~a~~il~ag~k~~R~~~~~s~~miH~~~~~~------------------~G~-------------~~~i~~~~~~l~  130 (179)
T d2cbya1          82 AASMGEFLLAAGTKGKRYALPHARILMHQPLGGV------------------TGS-------------AADIAIQAEQFA  130 (179)
T ss_dssp             EETHHHHHHHTSCTTCEEECTTCEEECCCC-----------------------------------------CHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCEEECCCHHHHCCCCCHHC------------------CCC-------------CHHHHHHHHHHH
T ss_conf             0247999997379896478876076628773213------------------896-------------198999999999


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHC-CCCCCHHHHHHCCCCCCCCC
Q ss_conf             99999999998413999989999864-98655887987697642159
Q 005581          550 NAYKLFRDKAAFSRSMTVDKMEEYAQ-GRVWTGNDAASRGLVDALGG  595 (690)
Q Consensus       550 ~~y~~F~~~Va~~R~~~~~~~~~i~~-Grv~tg~eAle~GLVD~ig~  595 (690)
                      ...+.+.+..++.-+++.+++++... ...++++||+++||||+|..
T Consensus       131 ~~~~~i~~i~a~~tg~~~~~i~~~~~~d~~l~a~EA~~~GliDeIi~  177 (179)
T d2cbya1         131 VIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIIT  177 (179)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHHTTCEEEHHHHHHHTSCSEECS
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHCCCCEECHHHHHHCCCCCEEEC
T ss_conf             99899888999884999999998602881533999998599848732

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.66  E-value=2e-15  Score=113.32  Aligned_cols=162  Identities=13%  Similarity=0.160  Sum_probs=117.0

Q ss_pred             EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             99952110368887878883017999999999988079956899981699951443168899999861999799998860
Q 005581          392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV  471 (690)
Q Consensus       392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~VkaVVLrinSpGG~~~as~~i~~~i~~~~~~KPVIA~i~g~  471 (690)
                      +|.+.|+|.+           .+.+.++..+..+..++.-+-|.|.||||||++.+.-.|++.++..  +.||++.+.|.
T Consensus        26 ii~l~g~I~~-----------~~~~~~~~~l~~l~~~~~~~~I~l~InS~GG~v~~glai~d~i~~~--~~~v~t~~~G~   92 (192)
T d1y7oa1          26 IIMLTGPVED-----------NMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFI--KADVQTIVMGM   92 (192)
T ss_dssp             EEEEESCBCH-----------HHHHHHHHHHHHHHHHCTTSCEEEEEEECCBCHHHHHHHHHHHHHS--SSCEEEEEEEE
T ss_pred             EEEECCEECH-----------HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHC--CCCEEEEECCC
T ss_conf             8998989866-----------9999999999876540555762555047778888899999999846--76609996413


Q ss_pred             CCHHHHHHHHHC--CEEEEECCCEECCCCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             117999999763--957870675000124424666547799870983212304301455320399999569999999999
Q 005581          472 AASGGYYMAMAA--GTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQ  549 (690)
Q Consensus       472 AaSGGy~iA~aa--D~IvA~p~t~~GSIGV~~~~~~~~~l~~klGv~~~~i~~g~~k~~~~~~~~~~s~~~~~~~~~~i~  549 (690)
                      |+|.|..|++++  +++++.|++.+..+...++..+-                             ..+.+.+.....+.
T Consensus        93 aaS~as~il~aG~~g~R~~~pns~~miHq~~~~~~G~-----------------------------~~~~~~~~~~~el~  143 (192)
T d1y7oa1          93 AASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGG-----------------------------TQQTDMAIAPEHLL  143 (192)
T ss_dssp             EETHHHHHHTTSCTTCEEECTTCEEECCCCC-------------------------------------------CHHHHH
T ss_pred             CCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCC-----------------------------CHHHHHHHHHHHHH
T ss_conf             0776542455237885530367878852034664222-----------------------------11577899999999


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHC-CCCCCHHHHHHCCCCCCCCC
Q ss_conf             99999999998413999989999864-98655887987697642159
Q 005581          550 NAYKLFRDKAAFSRSMTVDKMEEYAQ-GRVWTGNDAASRGLVDALGG  595 (690)
Q Consensus       550 ~~y~~F~~~Va~~R~~~~~~~~~i~~-Grv~tg~eAle~GLVD~ig~  595 (690)
                      ...+.+.+..++..|++.+++++... ...++++||+++||||+|-.
T Consensus       144 ~~~~~i~~i~~~~tg~~~~~i~~~~~rd~~lsa~EAleyGliD~Ii~  190 (192)
T d1y7oa1         144 KTRNTLEKILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMA  190 (192)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHSCCCBCHHHHHHHTSCSEECC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHCCCCEECHHHHHHCCCCCEEEC
T ss_conf             99999999999872999999997642792641999998599849806

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.65  E-value=3.4e-15  Score=111.92  Aligned_cols=159  Identities=15%  Similarity=0.130  Sum_probs=114.8

Q ss_pred             EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             99952110368887878883017999999999988079956899981699951443168899999861999799998860
Q 005581          392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV  471 (690)
Q Consensus       392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~VkaVVLrinSpGG~~~as~~i~~~i~~~~~~KPVIA~i~g~  471 (690)
                      +|.+.|+|..           .+...++..|..+...+ -+-|-|.||||||++.+.-.|++.++.+  +.||.+.+.|.
T Consensus        20 ii~l~g~Id~-----------~~~~~~i~~l~~l~~~~-~~~I~l~INS~GG~v~~g~ai~d~i~~~--~~~v~tv~~G~   85 (190)
T d2f6ia1          20 IIYLTDEINK-----------KTADELISQLLYLDNIN-HNDIKIYINSPGGSINEGLAILDIFNYI--KSDIQTISFGL   85 (190)
T ss_dssp             EEEECSCBCH-----------HHHHHHHHHHHHHHHHC-CSCEEEEEEECCBCHHHHHHHHHHHHHS--SSCEEEEEEEE
T ss_pred             EEEECCEECH-----------HHHHHHHHHHHHHHCCC-CCCEEEEEECCHHHHHHHHHHHHHHHHH--CCCEEEEEECC
T ss_conf             8998886678-----------99999999999885358-8775999718125556789999999860--77369998506


Q ss_pred             CCHHHHHHHHHCCE--EEEECCCEECCCCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             11799999976395--7870675000124424666547799870983212304301455320399999569999999999
Q 005581          472 AASGGYYMAMAAGT--ILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQ  549 (690)
Q Consensus       472 AaSGGy~iA~aaD~--IvA~p~t~~GSIGV~~~~~~~~~l~~klGv~~~~i~~g~~k~~~~~~~~~~s~~~~~~~~~~i~  549 (690)
                      |+|.|..|+++|++  +++.|++.+..........                  |...             +.+...+.++
T Consensus        86 aaS~a~~i~~aG~kg~R~~~pns~imiH~~s~~~~------------------G~~~-------------di~~~~~~l~  134 (190)
T d2f6ia1          86 VASMASVILASGKKGKRKSLPNCRIMIHQPLGNAF------------------GHPQ-------------DIEIQTKEIL  134 (190)
T ss_dssp             ECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC---------------------------------------CHHHHH
T ss_pred             CCCHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCC------------------CCHH-------------HHHHHHHHHH
T ss_conf             63056788870787764157772799723422357------------------7389-------------9999999899


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHCCCC-CCHHHHHHCCCCCCCCC
Q ss_conf             99999999998413999989999864986-55887987697642159
Q 005581          550 NAYKLFRDKAAFSRSMTVDKMEEYAQGRV-WTGNDAASRGLVDALGG  595 (690)
Q Consensus       550 ~~y~~F~~~Va~~R~~~~~~~~~i~~Grv-~tg~eAle~GLVD~ig~  595 (690)
                      ...+.+.+..++.-+.+.+.+++...... ++|+||+++||||+|..
T Consensus       135 ~~~~~~~~i~a~~tg~~~~~i~~~~~~d~~l~a~EAl~~GliD~Ii~  181 (190)
T d2f6ia1         135 YLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIE  181 (190)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHHTTCEECHHHHHHHTSCSEECC
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHCCCCEEECHHHHHHCCCCCEECC
T ss_conf             99999999999883999999998515881623999998399849844

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=3.7e-15  Score=111.70  Aligned_cols=159  Identities=14%  Similarity=0.107  Sum_probs=126.6

Q ss_pred             EEEECEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC-CC
Q ss_conf             99971031455433458899999999999984539992199999099998988999999999997635981999936-75
Q 005581          143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC  221 (690)
Q Consensus       143 vI~l~G~I~~~~~~~~~~~~sl~~i~~~L~~Aa~D~~IkaIvL~ids~GG~~~~~~eI~~aI~~~r~sgKpVvAyv~-~a  221 (690)
                      +|-|.|+|.+..         ...++..|.....++..+-|.|.+|||||.+.....|.++|+.   +..||++++. .|
T Consensus        18 iI~l~g~I~~~~---------~~~~i~~l~~l~~~~~~~~I~l~InS~GG~v~~g~~i~d~i~~---~~~~v~tv~~G~a   85 (183)
T d1yg6a1          18 VIFLTGQVEDHM---------ANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQF---IKPDVSTICMGQA   85 (183)
T ss_dssp             EEEEESSBCHHH---------HHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHH---SSSCEEEEEEEEE
T ss_pred             EEEECCEECHHH---------HHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHH---CCCCEEEEEEEEE
T ss_conf             899897987799---------9999999987664056776289984898618889999999975---7999899998775


Q ss_pred             CHHHHHHHHCCC--EEEECCCCEEEEECCCEECCCHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             224647853059--068658874777023001000122653239400789612566557764478999999999999999
Q 005581          222 GEKEYYLACACE--ELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD  299 (690)
Q Consensus       222 as~gY~lAsaaD--~I~a~P~s~igs~Gv~~~~~~~~~lL~KlGI~~~~~~~G~yKsa~~p~~~~~~s~e~re~l~~~l~  299 (690)
                      +|.|.+|.++|+  +.|+.|.+.+..+.+....                                ..+..+-+.....++
T Consensus        86 aS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~~--------------------------------~G~~~~i~~~~~~~~  133 (183)
T d1yg6a1          86 ASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGY--------------------------------QGQATDIEIHAREIL  133 (183)
T ss_dssp             ETHHHHHHHTSCTTCEEECTTCEEEECCCEEEE--------------------------------EEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCEEECCCCEEEECCCCCCC--------------------------------CCCHHHHHHHHHHHH
T ss_conf             887799997678775446798627860555166--------------------------------667999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHCCCC-CHHHHHHCCCEEEECC
Q ss_conf             999999999997429999999998803765-4887873688157525
Q 005581          300 NIYGNWLDKVSSTKGKRKEDIERFINDGVY-KVERLKEEGFITNVLY  345 (690)
Q Consensus       300 ~~~~~f~~~Va~~Rg~~~~~v~~~~~~~~~-~a~eAl~~GLID~i~~  345 (690)
                      .+...+.+.+++..+++.+++++.++...| +++||+++||||+|..
T Consensus       134 ~~~~~~~~~~~~~tg~~~e~i~~~~~~d~~lta~EAl~~GliD~Ii~  180 (183)
T d1yg6a1         134 KVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILT  180 (183)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHTSSCEEEEHHHHHHHTSSSEECC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEEC
T ss_conf             99999989999987969999998741682365999998599858834

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.60  E-value=3.4e-14  Score=105.54  Aligned_cols=159  Identities=10%  Similarity=0.009  Sum_probs=127.4

Q ss_pred             EEEECEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC-CC
Q ss_conf             99971031455433458899999999999984539992199999099998988999999999997635981999936-75
Q 005581          143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC  221 (690)
Q Consensus       143 vI~l~G~I~~~~~~~~~~~~sl~~i~~~L~~Aa~D~~IkaIvL~ids~GG~~~~~~eI~~aI~~~r~sgKpVvAyv~-~a  221 (690)
                      +|-|.|+|.+..         ...++..|......+.-+-|.|.||||||++.....|.+.++.   ..-||+.++. .|
T Consensus        28 iifl~g~I~~~~---------~~~~i~~l~~l~~~~~~~~I~l~InS~GG~v~~g~~i~d~i~~---~~~~V~tv~~G~a   95 (193)
T d1tg6a1          28 IVCVMGPIDDSV---------ASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQY---ILNPICTWCVGQA   95 (193)
T ss_dssp             EEEEESSBCHHH---------HHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHH---SCSCEEEEEEEEE
T ss_pred             EEEECCEECHHH---------HHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH---HCCCEEEEECCCH
T ss_conf             898798886178---------9999999987433577837999960696617778999999986---2675289981604


Q ss_pred             CHHHHHHHHCCCE--EEECCCCEEEEECCCEECCCHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             2246478530590--68658874777023001000122653239400789612566557764478999999999999999
Q 005581          222 GEKEYYLACACEE--LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD  299 (690)
Q Consensus       222 as~gY~lAsaaD~--I~a~P~s~igs~Gv~~~~~~~~~lL~KlGI~~~~~~~G~yKsa~~p~~~~~~s~e~re~l~~~l~  299 (690)
                      +|.|..|.++|++  .|+.|.+.+..+.+..                                ....+..+-+.....++
T Consensus        96 aS~a~~il~aG~~g~R~~~pns~~miHq~~~--------------------------------~~~G~~~di~~~~~el~  143 (193)
T d1tg6a1          96 ASMGSLLLAAGTPGMRHSLPNSRIMIHQPSG--------------------------------GARGQATDIAIQAEEIM  143 (193)
T ss_dssp             ETHHHHHHHTSCTTCEEECTTCEEEECCCCC--------------------------------CCCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCHHHHCCCCC--------------------------------CCCCCHHHHHHHHHHHH
T ss_conf             7877899661766750458642988317765--------------------------------78869999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHCCC-CCHHHHHHCCCEEEECC
Q ss_conf             99999999999742999999999880376-54887873688157525
Q 005581          300 NIYGNWLDKVSSTKGKRKEDIERFINDGV-YKVERLKEEGFITNVLY  345 (690)
Q Consensus       300 ~~~~~f~~~Va~~Rg~~~~~v~~~~~~~~-~~a~eAl~~GLID~i~~  345 (690)
                      .+.+.+.+.+++..|++.+++++.++... ++++||+++||||+|..
T Consensus       144 ~~~~~i~~i~a~~Tg~~~~~i~~~~~rD~~lta~EAl~yGliD~Ii~  190 (193)
T d1tg6a1         144 KLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLV  190 (193)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHSSCEEECHHHHHHHTSCSEECS
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEECC
T ss_conf             99999899999871998999998742685277999998399988725

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.60  E-value=1.5e-14  Score=107.81  Aligned_cols=160  Identities=17%  Similarity=0.156  Sum_probs=124.1

Q ss_pred             EEEECEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC-CC
Q ss_conf             99971031455433458899999999999984539992199999099998988999999999997635981999936-75
Q 005581          143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC  221 (690)
Q Consensus       143 vI~l~G~I~~~~~~~~~~~~sl~~i~~~L~~Aa~D~~IkaIvL~ids~GG~~~~~~eI~~aI~~~r~sgKpVvAyv~-~a  221 (690)
                      +|-|.|+|.+..         ..+++..|.....++..+-|.|.+|||||++.....|.++++.   .+.||+.++. .|
T Consensus        15 ii~l~g~I~~~~---------~~~~i~~l~~l~~~~~~~~I~l~InS~GG~v~~gl~i~d~i~~---~~~~v~t~~~G~a   82 (179)
T d2cbya1          15 IIFLGSEVNDEI---------ANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVL---APCDIATYAMGMA   82 (179)
T ss_dssp             EEEECSCBCHHH---------HHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHH---CSSCEEEEEEEEE
T ss_pred             EEEECCEECHHH---------HHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH---HCCCEEEEHHHHH
T ss_conf             999898787899---------9999999999746699972899951787877789999999985---2643156455310


Q ss_pred             CHHHHHHHHCCC--EEEECCCCEEEEECCCEECCCHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             224647853059--068658874777023001000122653239400789612566557764478999999999999999
Q 005581          222 GEKEYYLACACE--ELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD  299 (690)
Q Consensus       222 as~gY~lAsaaD--~I~a~P~s~igs~Gv~~~~~~~~~lL~KlGI~~~~~~~G~yKsa~~p~~~~~~s~e~re~l~~~l~  299 (690)
                      +|.|..|.++++  +.|+.|.+.+..+.+....                                ..+..+-+.....++
T Consensus        83 aS~a~~il~ag~k~~R~~~~~s~~miH~~~~~~--------------------------------~G~~~~i~~~~~~l~  130 (179)
T d2cbya1          83 ASMGEFLLAAGTKGKRYALPHARILMHQPLGGV--------------------------------TGSAADIAIQAEQFA  130 (179)
T ss_dssp             ETHHHHHHHTSCTTCEEECTTCEEECCCC------------------------------------------CHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCEEECCCHHHHCCCCCHHC--------------------------------CCCCHHHHHHHHHHH
T ss_conf             247999997379896478876076628773213--------------------------------896198999999999


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHCCC-CCHHHHHHCCCEEEECCH
Q ss_conf             99999999999742999999999880376-548878736881575251
Q 005581          300 NIYGNWLDKVSSTKGKRKEDIERFINDGV-YKVERLKEEGFITNVLYD  346 (690)
Q Consensus       300 ~~~~~f~~~Va~~Rg~~~~~v~~~~~~~~-~~a~eAl~~GLID~i~~~  346 (690)
                      .+.+.+.+.+++..|++.+.+++.++... ++++||+++||||+|.+.
T Consensus       131 ~~~~~i~~i~a~~tg~~~~~i~~~~~~d~~l~a~EA~~~GliDeIi~~  178 (179)
T d2cbya1         131 VIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITR  178 (179)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHHTTCEEEHHHHHHHTSCSEECSC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHCCCCEECHHHHHHCCCCCEEECC
T ss_conf             998998889998849999999986028815339999985998487328

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.53  E-value=1.1e-13  Score=102.19  Aligned_cols=161  Identities=11%  Similarity=0.093  Sum_probs=119.7

Q ss_pred             EEEECEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC-CC
Q ss_conf             99971031455433458899999999999984539992199999099998988999999999997635981999936-75
Q 005581          143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC  221 (690)
Q Consensus       143 vI~l~G~I~~~~~~~~~~~~sl~~i~~~L~~Aa~D~~IkaIvL~ids~GG~~~~~~eI~~aI~~~r~sgKpVvAyv~-~a  221 (690)
                      +|-|.|+|.+..         ...++..|.....++.-+-|.|.||||||++.....|.+.++..   ..||+.++. .|
T Consensus        26 ii~l~g~I~~~~---------~~~~~~~l~~l~~~~~~~~I~l~InS~GG~v~~glai~d~i~~~---~~~v~t~~~G~a   93 (192)
T d1y7oa1          26 IIMLTGPVEDNM---------ANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFI---KADVQTIVMGMA   93 (192)
T ss_dssp             EEEEESCBCHHH---------HHHHHHHHHHHHHHCTTSCEEEEEEECCBCHHHHHHHHHHHHHS---SSCEEEEEEEEE
T ss_pred             EEEECCEECHHH---------HHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHC---CCCEEEEECCCC
T ss_conf             899898986699---------99999999876540555762555047778888899999999846---766099964130


Q ss_pred             CHHHHHHHHCC--CEEEECCCCEEEEECCCEECCCHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             22464785305--9068658874777023001000122653239400789612566557764478999999999999999
Q 005581          222 GEKEYYLACAC--EELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD  299 (690)
Q Consensus       222 as~gY~lAsaa--D~I~a~P~s~igs~Gv~~~~~~~~~lL~KlGI~~~~~~~G~yKsa~~p~~~~~~s~e~re~l~~~l~  299 (690)
                      +|.|..|++++  ++.|+.|.+.+..+.+......                              ...+.+.+.....+.
T Consensus        94 aS~as~il~aG~~g~R~~~pns~~miHq~~~~~~G------------------------------~~~~~~~~~~~~el~  143 (192)
T d1y7oa1          94 ASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGG------------------------------GTQQTDMAIAPEHLL  143 (192)
T ss_dssp             ETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------------------------------------CHHHHH
T ss_pred             CCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCC------------------------------CCHHHHHHHHHHHHH
T ss_conf             77654245523788553036787885203466422------------------------------211577899999999


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHCC-CCCHHHHHHCCCEEEECC
Q ss_conf             9999999999974299999999988037-654887873688157525
Q 005581          300 NIYGNWLDKVSSTKGKRKEDIERFINDG-VYKVERLKEEGFITNVLY  345 (690)
Q Consensus       300 ~~~~~f~~~Va~~Rg~~~~~v~~~~~~~-~~~a~eAl~~GLID~i~~  345 (690)
                      .+.+.+.+.+++..|++.+++++.++.. .++++||+++||||+|..
T Consensus       144 ~~~~~i~~i~~~~tg~~~~~i~~~~~rd~~lsa~EAleyGliD~Ii~  190 (192)
T d1y7oa1         144 KTRNTLEKILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMA  190 (192)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHSCCCBCHHHHHHHTSCSEECC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHCCCCEECHHHHHHCCCCCEEEC
T ss_conf             99999999999872999999997642792641999998599849806

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=99.52  E-value=1e-13  Score=102.49  Aligned_cols=167  Identities=12%  Similarity=0.057  Sum_probs=118.7

Q ss_pred             CCCEEEEEEECEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC-----CCCHHHH-------------H
Q ss_conf             689099999710314554334588999999999999845399921999990999-----9898899-------------9
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV-------------E  198 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~sl~~i~~~L~~Aa~D~~IkaIvL~ids~-----GG~~~~~-------------~  198 (690)
                      .++.|++|+|+.+=.    .+..+...+.++.+.++.+..|+++++|||.-+.+     |+++...             .
T Consensus         6 ~~d~I~~itlnrp~~----~Nal~~~~~~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~   81 (230)
T d2a7ka1           6 NSDEVRVITLDHPNK----HNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWID   81 (230)
T ss_dssp             EETTEEEEEECCSST----TCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHH
T ss_pred             ECCCEEEEEECCCCC----CCCCCHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHCCCCCCCCCCCCCCCCCCHH
T ss_conf             459999999768877----7999999999999999999739764300000021045543202321223332333221101


Q ss_pred             HHHHHHHHHHHCCCEEEEEECC-CCHHHHHHHHCCCEEEECCCCEEEEECCCEECCCHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf             9999999976359819999367-522464785305906865887477702300100012265323940078961256655
Q 005581          199 EIRRHVVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA  277 (690)
Q Consensus       199 eI~~aI~~~r~sgKpVvAyv~~-aas~gY~lAsaaD~I~a~P~s~igs~Gv~~~~~~~~~lL~KlGI~~~~~~~G~yKsa  277 (690)
                      .+.+.+..++..+|||||.+++ |..+|..++++||.+++.+.+.|+...+            ++|+-|         ..
T Consensus        82 ~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~------------~~G~~p---------~~  140 (230)
T d2a7ka1          82 RVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPEL------------KHGIGC---------SV  140 (230)
T ss_dssp             HHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGG------------GGTCCC---------HH
T ss_pred             HHHHHHHCCCCHHCCEEEECCCCCCCCCCCCHHCCCHHHCCCCCHHHHCCC------------CCCCCC---------CC
T ss_conf             100000002000000001100245554422000111100013213330123------------233333---------22


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH-HHHCCCCCHHHHHHCCCEEEECCHHHHHHHHHHH
Q ss_conf             776447899999999999999999999999999742999999999-8803765488787368815752516899999998
Q 005581          278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKER  356 (690)
Q Consensus       278 ~~p~~~~~~s~e~re~l~~~l~~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~~~~a~eAl~~GLID~i~~~de~~~~l~~~  356 (690)
                      +.+                       .+...      +......+ ++.+..+++++|++.||||++...+++.+.+.+.
T Consensus       141 g~~-----------------------~l~~~------iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~  191 (230)
T d2a7ka1         141 GAA-----------------------ILGFT------HGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVESSALLDAAITQ  191 (230)
T ss_dssp             HHH-----------------------HHHHH------HCHHHHHHHHHHCCCBCHHHHHHHTCCSEEECHHHHHHHHHHH
T ss_pred             CCC-----------------------CCCCC------CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             223-----------------------33322------2222333433466540389999864034579858999999999


Q ss_pred             H
Q ss_conf             1
Q 005581          357 L  357 (690)
Q Consensus       357 ~  357 (690)
                      +
T Consensus       192 a  192 (230)
T d2a7ka1         192 A  192 (230)
T ss_dssp             H
T ss_pred             H
T ss_conf             9

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=99.51  E-value=4.9e-13  Score=98.16  Aligned_cols=169  Identities=13%  Similarity=0.078  Sum_probs=120.0

Q ss_pred             CCCCEEEEEEECEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC----CCCHHHH--------------
Q ss_conf             3689099999710314554334588999999999999845399921999990999----9898899--------------
Q 005581          136 VRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV--------------  197 (690)
Q Consensus       136 ~~~~~VlvI~l~G~I~~~~~~~~~~~~sl~~i~~~L~~Aa~D~~IkaIvL~ids~----GG~~~~~--------------  197 (690)
                      +.+|.|++|+|+.+=    ..+-.+...+.++.++++.+..|+.+++|||+.++.    |++....              
T Consensus         4 ie~G~va~Itlnrp~----~~Nal~~~~~~el~~~l~~~~~d~~v~~vvl~g~g~~f~aG~dl~~~~~~~~~~~~~~~~~   79 (253)
T d1uiya_           4 VEKGHVAVVFLNDPE----RRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRH   79 (253)
T ss_dssp             EECSSEEEEEECCGG----GTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHH
T ss_pred             EEECCEEEEEECCCC----CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCCCH
T ss_conf             924999999985888----6789999999999999999972999649999666432221110677630234575311000


Q ss_pred             -HHHHHHHHHHHHCCCEEEEEECC-CCHHHHHHHHCCCEEEECCCCEEEEECCCEECCCHHHHHHHCCCEEEEEEECCCC
Q ss_conf             -99999999976359819999367-5224647853059068658874777023001000122653239400789612566
Q 005581          198 -EEIRRHVVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYK  275 (690)
Q Consensus       198 -~eI~~aI~~~r~sgKpVvAyv~~-aas~gY~lAsaaD~I~a~P~s~igs~Gv~~~~~~~~~lL~KlGI~~~~~~~G~yK  275 (690)
                       ..+...+..+....|||||.+++ |..+|..|+++||.+++.+.+.++....            ++|+-+         
T Consensus        80 ~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~e~------------~~g~~~---------  138 (253)
T d1uiya_          80 SLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEV------------KIGFVA---------  138 (253)
T ss_dssp             HHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHH------------HHTCCC---------
T ss_pred             HHHHHHHHHHHHCCCCCEEEEECEEEEHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCCCCC---------
T ss_conf             13332145687618978899737287326279876201656646667764312------------222222---------


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH-HHHCCCCCHHHHHHCCCEEEECCHHHHHHHHH
Q ss_conf             55776447899999999999999999999999999742999999999-88037654887873688157525168999999
Q 005581          276 SAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLK  354 (690)
Q Consensus       276 sa~~p~~~~~~s~e~re~l~~~l~~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~~~~a~eAl~~GLID~i~~~de~~~~l~  354 (690)
                           ..                      .....  .|-+......+ ++.+..+++++|++.||||++...+++...+.
T Consensus       139 -----~~----------------------~~~~l--~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~  189 (253)
T d1uiya_         139 -----AL----------------------VSVIL--VRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGKALEEAK  189 (253)
T ss_dssp             -----HH----------------------HHHHH--HHHSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECTTCHHHHHH
T ss_pred             -----CC----------------------CHHHH--HCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf             -----21----------------------00121--11247999998762485777999997288752233211101678


Q ss_pred             HHHC
Q ss_conf             9818
Q 005581          355 ERLG  358 (690)
Q Consensus       355 ~~~g  358 (690)
                      +.+.
T Consensus       190 ~~a~  193 (253)
T d1uiya_         190 ALAE  193 (253)
T ss_dssp             HHHH
T ss_pred             HHHH
T ss_conf             8877

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.51  E-value=2e-13  Score=100.58  Aligned_cols=168  Identities=12%  Similarity=0.094  Sum_probs=120.5

Q ss_pred             CCEEEEEEECE-EECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC----CCCHHHHH--------------
Q ss_conf             89099999710-314554334588999999999999845399921999990999----98988999--------------
Q 005581          138 KGSVLTMKLRG-QIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE--------------  198 (690)
Q Consensus       138 ~~~VlvI~l~G-~I~~~~~~~~~~~~sl~~i~~~L~~Aa~D~~IkaIvL~ids~----GG~~~~~~--------------  198 (690)
                      ++.|++|.++- +    ...+..+...+.++.++++.+..|+.+++|||.-+..    |+++....              
T Consensus        14 ~~gva~i~ln~~p----~~~Nal~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   89 (310)
T d1wdka4          14 ESGIVELKFDLKG----ESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDAELIAGN   89 (310)
T ss_dssp             GGGEEEEEECCTT----SSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSSBBCCCHHHHHHHTTSCHHHHHHHH
T ss_pred             CCCEEEEEECCCC----CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCHHHHHHH
T ss_conf             3988999989898----346789999999999999999848995699997899874100115666520101001122323


Q ss_pred             -HHHHHHHHHHHCCCEEEEEEC-CCCHHHHHHHHCCCEEEECCCCEEEEECCCEECCCHHHHHHHCCCEEEEEEECCCCC
Q ss_conf             -999999997635981999936-752246478530590686588747770230010001226532394007896125665
Q 005581          199 -EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS  276 (690)
Q Consensus       199 -eI~~aI~~~r~sgKpVvAyv~-~aas~gY~lAsaaD~I~a~P~s~igs~Gv~~~~~~~~~lL~KlGI~~~~~~~G~yKs  276 (690)
                       ++.+.+..++..+|||||.++ .|..+|..++++||.+++.+.+.++...+            ++|+-|         .
T Consensus        90 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~elal~cD~ria~~~a~f~~pe~------------~~Gl~P---------~  148 (310)
T d1wdka4          90 LEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEV------------KLGIYP---------G  148 (310)
T ss_dssp             HHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGG------------GGTCCC---------C
T ss_pred             HHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCEECCCCC------------CCCCCC---------C
T ss_conf             6788998886328811110003445444432210024310364335416622------------458776---------5


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH-HHHCCCCCHHHHHHCCCEEEECCHHHHHHHHHH
Q ss_conf             5776447899999999999999999999999999742999999999-880376548878736881575251689999999
Q 005581          277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKE  355 (690)
Q Consensus       277 a~~p~~~~~~s~e~re~l~~~l~~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~~~~a~eAl~~GLID~i~~~de~~~~l~~  355 (690)
                      .+-.+           .           +...      +......+ ++.+..++++||+++||||++...+++.+...+
T Consensus       149 ~gg~~-----------~-----------L~r~------iG~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~  200 (310)
T d1wdka4         149 FGGTV-----------R-----------LPRL------IGVDNAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALD  200 (310)
T ss_dssp             SSHHH-----------H-----------HHHH------HCHHHHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHH
T ss_pred             CCCHH-----------H-----------HHHH------HHHHHHHHHHCCCCCCCHHHHHHCCCCCEECCHHHHHHHHHH
T ss_conf             44203-----------5-----------4432------455455665302456689999522675077168999999999


Q ss_pred             HHC
Q ss_conf             818
Q 005581          356 RLG  358 (690)
Q Consensus       356 ~~g  358 (690)
                      .+.
T Consensus       201 ~a~  203 (310)
T d1wdka4         201 LIK  203 (310)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             999

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=8.6e-14  Score=102.99  Aligned_cols=161  Identities=17%  Similarity=0.142  Sum_probs=117.4

Q ss_pred             CCEEEEEEECEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC-----CCCHHH------------HHHH
Q ss_conf             89099999710314554334588999999999999845399921999990999-----989889------------9999
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGK------------VEEI  200 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~sl~~i~~~L~~Aa~D~~IkaIvL~ids~-----GG~~~~------------~~eI  200 (690)
                      ++.|++|+++.+=    ..+-.+...+.++.++++.+..|+.+++|||+.+.+     |+....            ...+
T Consensus        13 ~~gI~~itlnrp~----~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~~~~~~~~~~~~~~   88 (266)
T d1hzda_          13 NRGIVVLGINRAY----GKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKI   88 (266)
T ss_dssp             GTTEEEEEECCGG----GTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCC----CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             6988999968998----779999999999999999997498863688723664430465321111111110122345677


Q ss_pred             HHHHHHHHHCCCEEEEEEC-CCCHHHHHHHHCCCEEEECCCCEEEEECCCEECCCHHHHHHHCCCEEEEEEECCCCCCCC
Q ss_conf             9999997635981999936-752246478530590686588747770230010001226532394007896125665577
Q 005581          201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD  279 (690)
Q Consensus       201 ~~aI~~~r~sgKpVvAyv~-~aas~gY~lAsaaD~I~a~P~s~igs~Gv~~~~~~~~~lL~KlGI~~~~~~~G~yKsa~~  279 (690)
                      .+.+..+....|||||.++ .|..+|..|+++||.+++.+.+.|+...+            ++|+.|         ..+.
T Consensus        89 ~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~------------~~G~~p---------~~g~  147 (266)
T d1hzda_          89 RAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVET------------KLAIIP---------GGGG  147 (266)
T ss_dssp             HHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGG------------GGTCCC---------CSSH
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCEEEECCCCEEEECCC------------CEEECC---------CCCC
T ss_conf             7888887428742001112334455521024543356447868740345------------552247---------7454


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH-HHHCCCCCHHHHHHCCCEEEECCHHHHHH
Q ss_conf             6447899999999999999999999999999742999999999-88037654887873688157525168999
Q 005581          280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVIS  351 (690)
Q Consensus       280 p~~~~~~s~e~re~l~~~l~~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~~~~a~eAl~~GLID~i~~~de~~~  351 (690)
                      .+           .           +...      +......+ ++.+..+++++|++.||||++...+++.+
T Consensus       148 ~~-----------~-----------l~~~------ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~  192 (266)
T d1hzda_         148 TQ-----------R-----------LPRA------IGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGD  192 (266)
T ss_dssp             HH-----------H-----------HHHH------HCHHHHHHHHHHTCEEEHHHHHHHTSCSEEECCCTTSC
T ss_pred             EE-----------E-----------EHHH------HHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCHHHHHH
T ss_conf             02-----------3-----------2345------67778776642377247788522343233357066555

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.50  E-value=3.2e-13  Score=99.37  Aligned_cols=157  Identities=13%  Similarity=0.032  Sum_probs=118.1

Q ss_pred             EEECEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC-CCC
Q ss_conf             9971031455433458899999999999984539992199999099998988999999999997635981999936-752
Q 005581          144 MKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VCG  222 (690)
Q Consensus       144 I~l~G~I~~~~~~~~~~~~sl~~i~~~L~~Aa~D~~IkaIvL~ids~GG~~~~~~eI~~aI~~~r~sgKpVvAyv~-~aa  222 (690)
                      |-|.|+|.+..         ..+++..|...... +-+-|.|.||||||++.....|.+.++..   ..||..++. .++
T Consensus        21 i~l~g~Id~~~---------~~~~i~~l~~l~~~-~~~~I~l~INS~GG~v~~g~ai~d~i~~~---~~~v~tv~~G~aa   87 (190)
T d2f6ia1          21 IYLTDEINKKT---------ADELISQLLYLDNI-NHNDIKIYINSPGGSINEGLAILDIFNYI---KSDIQTISFGLVA   87 (190)
T ss_dssp             EEECSCBCHHH---------HHHHHHHHHHHHHH-CCSCEEEEEEECCBCHHHHHHHHHHHHHS---SSCEEEEEEEEEC
T ss_pred             EEECCEECHHH---------HHHHHHHHHHHHCC-CCCCEEEEEECCHHHHHHHHHHHHHHHHH---CCCEEEEEECCCC
T ss_conf             99888667899---------99999999988535-88775999718125556789999999860---7736999850663


Q ss_pred             HHHHHHHHCCCE--EEECCCCEEEEECCCEECCCHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             246478530590--686588747770230010001226532394007896125665577644789999999999999999
Q 005581          223 EKEYYLACACEE--LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDN  300 (690)
Q Consensus       223 s~gY~lAsaaD~--I~a~P~s~igs~Gv~~~~~~~~~lL~KlGI~~~~~~~G~yKsa~~p~~~~~~s~e~re~l~~~l~~  300 (690)
                      |.|..|++++++  .++.|.+.+..+.+....                                .....+.+.....++.
T Consensus        88 S~a~~i~~aG~kg~R~~~pns~imiH~~s~~~--------------------------------~G~~~di~~~~~~l~~  135 (190)
T d2f6ia1          88 SMASVILASGKKGKRKSLPNCRIMIHQPLGNA--------------------------------FGHPQDIEIQTKEILY  135 (190)
T ss_dssp             HHHHHHHHTSCTTCEEECTTCEEESSCTTCSC--------------------------------C--------CHHHHHH
T ss_pred             CHHHHHHHHCCCCCCCCCCCCEEEECCCCCCC--------------------------------CCCHHHHHHHHHHHHH
T ss_conf             05678887078776415777279972342235--------------------------------7738999999998999


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHCCCC-CHHHHHHCCCEEEECC
Q ss_conf             99999999997429999999998803765-4887873688157525
Q 005581          301 IYGNWLDKVSSTKGKRKEDIERFINDGVY-KVERLKEEGFITNVLY  345 (690)
Q Consensus       301 ~~~~f~~~Va~~Rg~~~~~v~~~~~~~~~-~a~eAl~~GLID~i~~  345 (690)
                      +.+.+...+++..|++.+.+++..+...| +++||+++||||+|..
T Consensus       136 ~~~~~~~i~a~~tg~~~~~i~~~~~~d~~l~a~EAl~~GliD~Ii~  181 (190)
T d2f6ia1         136 LKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIE  181 (190)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHTTCEECHHHHHHHTSCSEECC
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHCCCCEEECHHHHHHCCCCCEECC
T ss_conf             9999999999883999999998515881623999998399849844

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=5.8e-14  Score=104.09  Aligned_cols=168  Identities=15%  Similarity=0.150  Sum_probs=121.3

Q ss_pred             CCCEEEEEEECEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC----CCCHHHHH----------HHHH
Q ss_conf             689099999710314554334588999999999999845399921999990999----98988999----------9999
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE----------EIRR  202 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~sl~~i~~~L~~Aa~D~~IkaIvL~ids~----GG~~~~~~----------eI~~  202 (690)
                      +++.|++|+|+.+=    ..+..+...+.++.++|+++..|+.+++|||..+..    |+++....          .+.+
T Consensus        13 ~~~~I~~itlnrP~----~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   88 (260)
T d1mj3a_          13 KNSSVGLIQLNRPK----ALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLS   88 (260)
T ss_dssp             GGGCEEEEEECCGG----GTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCHHHHHHC--CC
T ss_pred             CCCCEEEEEECCCC----CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHCCCHHHHHHHHHHH
T ss_conf             77998999980898----67899999999999999999759886558981354333321016665212124566789999


Q ss_pred             HHHHHHHCCCEEEEEECC-CCHHHHHHHHCCCEEEECCCCEEEEECCCEECCCHHHHHHHCCCEEEEEEECCCCCCCCCC
Q ss_conf             999976359819999367-5224647853059068658874777023001000122653239400789612566557764
Q 005581          203 HVVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQL  281 (690)
Q Consensus       203 aI~~~r~sgKpVvAyv~~-aas~gY~lAsaaD~I~a~P~s~igs~Gv~~~~~~~~~lL~KlGI~~~~~~~G~yKsa~~p~  281 (690)
                      .+..+....|||||.+++ |..+|..|+++||.+++.+.+.|+...+            ++|+.|         ..+..+
T Consensus        89 ~~~~~~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~------------~~Gl~p---------~~~~~~  147 (260)
T d1mj3a_          89 HWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEI------------LLGTIP---------GAGGTQ  147 (260)
T ss_dssp             GGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGG------------GGTCCC---------CSSTTT
T ss_pred             HHHHHCCCCCEEEEEECCEEEHHHHHHHHHCCEEEECCCCEEECCHH------------CCCCCC---------CCCHHH
T ss_conf             98874149986999983757198899999799999749988988511------------607687---------504999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH-HHHCCCCCHHHHHHCCCEEEECCHHHHHHHHHHHH
Q ss_conf             47899999999999999999999999999742999999999-88037654887873688157525168999999981
Q 005581          282 TRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL  357 (690)
Q Consensus       282 ~~~~~s~e~re~l~~~l~~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~~~~a~eAl~~GLID~i~~~de~~~~l~~~~  357 (690)
                      .                      +...+      ......+ ++.+..++++||++.||||++...+++.....+.+
T Consensus       148 ~----------------------l~~~i------g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a  196 (260)
T d1mj3a_         148 R----------------------LTRAV------GKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCA  196 (260)
T ss_dssp             H----------------------HHHHH------CHHHHHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHH
T ss_pred             H----------------------HHHHH------CHHHHHHHHHCCCCCCCHHHCCCCCCEEEECCCCCCCCCCCCC
T ss_conf             9----------------------99973------8999999998196627433235897326510122233333332

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.46  E-value=4.5e-13  Score=98.42  Aligned_cols=167  Identities=13%  Similarity=0.050  Sum_probs=118.0

Q ss_pred             CCEEEEEEECEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC----CC-------CHHH----------
Q ss_conf             89099999710314554334588999999999999845399921999990999----98-------9889----------
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SC-------GWGK----------  196 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~sl~~i~~~L~~Aa~D~~IkaIvL~ids~----GG-------~~~~----------  196 (690)
                      ++.|++|+|+.+=    ..+..+...+.++.++|+++.+|+.+++|||..+++    ||       +...          
T Consensus        27 ~~gi~~ItlnRP~----~~NAl~~~m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~~f~ag~Dl~~~~~~~~~~~~  102 (297)
T d1q52a_          27 DDATVRVAFNRPE----VRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYAS  102 (297)
T ss_dssp             SSSEEEEEECCGG----GTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC--------------
T ss_pred             CCCEEEEEECCCC----CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCHHHHHCCCCCCCCC
T ss_conf             0998999977888----678989999999999999997299965799966887655256655420113443023322233


Q ss_pred             -----H--------HHHHHHHHHHHHCCCEEEEEEC-CCCHHHHHHHHCCCEEEECCCC-EEEEECCCEECCCHHHHHHH
Q ss_conf             -----9--------9999999997635981999936-7522464785305906865887-47770230010001226532
Q 005581          197 -----V--------EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSA-YFSLYGLTVQASFLGGVLEK  261 (690)
Q Consensus       197 -----~--------~eI~~aI~~~r~sgKpVvAyv~-~aas~gY~lAsaaD~I~a~P~s-~igs~Gv~~~~~~~~~lL~K  261 (690)
                           .        ..+.+.+..+....|||||.++ .|..+|..++++||.+++.+.+ .++...+            +
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GGG~~lal~~D~~ia~~~~~~f~~pe~------------~  170 (297)
T d1q52a_         103 GDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDA------------D  170 (297)
T ss_dssp             ---------------CHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCGG------------G
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEECCCHHHHHHHCCCCCCCCCCCEEEEE------------C
T ss_conf             4431003567888888999999998529839999724166411055554430200124321000010------------1


Q ss_pred             CCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH-HHHHCCCCCHHHHHHCCCE
Q ss_conf             394007896125665577644789999999999999999999999999974299999999-9880376548878736881
Q 005581          262 VGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIE-RFINDGVYKVERLKEEGFI  340 (690)
Q Consensus       262 lGI~~~~~~~G~yKsa~~p~~~~~~s~e~re~l~~~l~~~~~~f~~~Va~~Rg~~~~~v~-~~~~~~~~~a~eAl~~GLI  340 (690)
                      +|+-|         ..+-       +.               .+...+..      .... -++.++.++++||+++|||
T Consensus       171 ~Gl~p---------~~~~-------~~---------------~L~r~iG~------~~a~~llltg~~~~a~eA~~~Glv  213 (297)
T d1q52a_         171 VGSFD---------GGYG-------SA---------------YLARQVGQ------KFAREIFFLGRTYTAEQMHQMGAV  213 (297)
T ss_dssp             GTCCC---------CSTT-------TH---------------HHHHHHCH------HHHHHHHHHCCEECHHHHHHHTSC
T ss_pred             CCCCC---------CCCC-------CC---------------CCCCCCCC------CCEEECCCCCCCCCHHHHHHHCCC
T ss_conf             36542---------2345-------41---------------21024675------200102122324446766541243


Q ss_pred             EEECCHHHHHHHHHHHH
Q ss_conf             57525168999999981
Q 005581          341 TNVLYDDEVISMLKERL  357 (690)
Q Consensus       341 D~i~~~de~~~~l~~~~  357 (690)
                      |++...+++.+...+.+
T Consensus       214 ~~vv~~~el~~~~~~~a  230 (297)
T d1q52a_         214 NAVAEHAELETVGLQWA  230 (297)
T ss_dssp             SEEECGGGHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
T ss_conf             24676577667788876

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=99.46  E-value=4.5e-13  Score=98.40  Aligned_cols=168  Identities=11%  Similarity=0.066  Sum_probs=118.4

Q ss_pred             CCCEEEEEEECEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC----CCCHHH----------------
Q ss_conf             689099999710314554334588999999999999845399921999990999----989889----------------
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGK----------------  196 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~sl~~i~~~L~~Aa~D~~IkaIvL~ids~----GG~~~~----------------  196 (690)
                      .++.|++|+++.+=    ..+..+...+.++.++|+.+.+|+.+++|||..+.+    |++...                
T Consensus         9 i~dgVa~Itlnrp~----~~Nal~~~~~~el~~~l~~~~~d~~i~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   84 (269)
T d1nzya_           9 VEDGVAEITIKLPR----HRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHFRI   84 (269)
T ss_dssp             EETTEEEEEECCGG----GTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHHHH
T ss_pred             EECCEEEEEECCCC----CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCHHHHHHH
T ss_conf             98999999976888----67898999999999999999858991699996774333302269887522354310357778


Q ss_pred             -HHHHHHHHHHHHHCCCEEEEEEC-CCCHHHHHHHHCCCEEEECCCCEEEEECCCEECCCHHHHHHHCCCEEEEEEECCC
Q ss_conf             -99999999997635981999936-7522464785305906865887477702300100012265323940078961256
Q 005581          197 -VEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKY  274 (690)
Q Consensus       197 -~~eI~~aI~~~r~sgKpVvAyv~-~aas~gY~lAsaaD~I~a~P~s~igs~Gv~~~~~~~~~lL~KlGI~~~~~~~G~y  274 (690)
                       ...+...+..+...+|||||.++ .|..+|..|+++||.+++.+.+.++....            ++|+-+        
T Consensus        85 ~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~~~------------~~g~~~--------  144 (269)
T d1nzya_          85 AALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWH------------TIGIGN--------  144 (269)
T ss_dssp             HHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHH------------HHTCCC--------
T ss_pred             HHHHHHHHHHHHHHHCCHHEHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCC------------CCCCCC--------
T ss_conf             888888999999863020023655524787323320461766525421102233------------233333--------


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH-HHHCCCCCHHHHHHCCCEEEECCHHHHHHHH
Q ss_conf             655776447899999999999999999999999999742999999999-8803765488787368815752516899999
Q 005581          275 KSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISML  353 (690)
Q Consensus       275 Ksa~~p~~~~~~s~e~re~l~~~l~~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~~~~a~eAl~~GLID~i~~~de~~~~l  353 (690)
                       ..       +.+    ..           +...+..      ....+ ++.+..++++||++.||||++...+++.+.+
T Consensus       145 -~~-------g~~----~~-----------l~~~ig~------~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a  195 (269)
T d1nzya_         145 -DT-------ATS----YS-----------LARIVGM------RRAMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVA  195 (269)
T ss_dssp             -CT-------THH----HH-----------HHHHHHH------HHHHHHHHHCCCBCHHHHHHHTSCSCEECHHHHHHHH
T ss_pred             -CC-------CCC----CC-----------CCCCCCH------HHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCH
T ss_conf             -33-------343----32-----------1003571------5555302423332045898729751234433332200


Q ss_pred             HHHH
Q ss_conf             9981
Q 005581          354 KERL  357 (690)
Q Consensus       354 ~~~~  357 (690)
                      .+.+
T Consensus       196 ~~~a  199 (269)
T d1nzya_         196 WKVA  199 (269)
T ss_dssp             HHHH
T ss_pred             HHHH
T ss_conf             3344

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=99.45  E-value=3.2e-13  Score=99.38  Aligned_cols=166  Identities=14%  Similarity=0.098  Sum_probs=118.9

Q ss_pred             CCEEEEEEECEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC----CCCCHHHH--------------HH
Q ss_conf             8909999971031455433458899999999999984539992199999099----99898899--------------99
Q 005581          138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV--------------EE  199 (690)
Q Consensus       138 ~~~VlvI~l~G~I~~~~~~~~~~~~sl~~i~~~L~~Aa~D~~IkaIvL~ids----~GG~~~~~--------------~e  199 (690)
                      ++.|++|+++ +  +  ..+..+...+.++.++++++..|+++++|||+.+.    .|+++...              ..
T Consensus        17 ~~gV~~itlr-p--~--~~Nal~~~m~~el~~~~~~~~~d~~vr~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~   91 (263)
T d1wz8a1          17 RPGVLEITFR-G--E--KLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRASHEALLRVFWE   91 (263)
T ss_dssp             ETTEEEEEEC-C--S--GGGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHHHHCHHHHHHHHHH
T ss_pred             CCCEEEEEEC-C--C--CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCHHH
T ss_conf             8978999979-9--8--878889999999999999996199974999963543222210022333101233332210245


Q ss_pred             HHHHHHHHHHCCCEEEEEECC-CCHHHHHHHHCCCEEEECCCCEEEEECCCEECCCHHHHHHHCCCEEEEEEECCCCCCC
Q ss_conf             999999976359819999367-5224647853059068658874777023001000122653239400789612566557
Q 005581          200 IRRHVVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG  278 (690)
Q Consensus       200 I~~aI~~~r~sgKpVvAyv~~-aas~gY~lAsaaD~I~a~P~s~igs~Gv~~~~~~~~~lL~KlGI~~~~~~~G~yKsa~  278 (690)
                      +.+.+..+....|||||.+++ |..+|..++++||.+++.+.+.++...+            ++|+-|         ..+
T Consensus        92 ~~~~~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~------------~~Gl~p---------~~~  150 (263)
T d1wz8a1          92 ARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHL------------RLGVAA---------GDH  150 (263)
T ss_dssp             HHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHH------------HHTSCC---------TTT
T ss_pred             HHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------------CCCCCC---------CCC
T ss_conf             66778776531010232113445665444211210101233343322233------------323333---------223


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH-HHHCCCCCHHHHHHCCCEEEECCHHHHHHHHHHHH
Q ss_conf             76447899999999999999999999999999742999999999-88037654887873688157525168999999981
Q 005581          279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL  357 (690)
Q Consensus       279 ~p~~~~~~s~e~re~l~~~l~~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~~~~a~eAl~~GLID~i~~~de~~~~l~~~~  357 (690)
                      ..+.                      +...+      ......+ ++.+..++++||++.||||++...+++.+.+.+.+
T Consensus       151 ~~~~----------------------l~~~~------G~~~a~~l~l~g~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a  202 (263)
T d1wz8a1         151 AVLL----------------------WPLLV------GMAKAKYHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVA  202 (263)
T ss_dssp             HHHH----------------------THHHH------CHHHHHHHHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHHH
T ss_pred             CCCC----------------------CCCCC------CCCHHHHHCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf             3334----------------------54222------2101333202211011468875177522232002257789999

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=4.8e-12  Score=91.86  Aligned_cols=167  Identities=15%  Similarity=0.191  Sum_probs=118.3

Q ss_pred             CCCEEEEEEECEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC----CCCHHHHH--------------
Q ss_conf             689099999710314554334588999999999999845399921999990999----98988999--------------
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE--------------  198 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~sl~~i~~~L~~Aa~D~~IkaIvL~ids~----GG~~~~~~--------------  198 (690)
                      .++.|+.|+++.+=    ..+..+...+.++.++|+.+..|+++++|||..++.    |++.....              
T Consensus        10 ~~~~I~~itlnrP~----~~Nals~~m~~el~~~l~~~~~d~~v~~vvltg~~~~F~aG~dl~~~~~~~~~~~~~~~~~~   85 (275)
T d1dcia_          10 AQKHVLHVQLNRPE----KRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARI   85 (275)
T ss_dssp             EETTEEEEEECCGG----GTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSSHHHH
T ss_pred             CCCCEEEEEECCCC----CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCH
T ss_conf             15988999974899----88999999999999999999739996699995446653567158886211134433211102


Q ss_pred             ---------HHHHHHHHHHHCCCEEEEEECC-CCHHHHHHHHCCCEEEECCCCEEEEECCCEECCCHHHHHHHCCCEEEE
Q ss_conf             ---------9999999976359819999367-522464785305906865887477702300100012265323940078
Q 005581          199 ---------EIRRHVVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQV  268 (690)
Q Consensus       199 ---------eI~~aI~~~r~sgKpVvAyv~~-aas~gY~lAsaaD~I~a~P~s~igs~Gv~~~~~~~~~lL~KlGI~~~~  268 (690)
                               ...+.+..+....|||||.+++ |..+|..|+++||.+++.+.+.++...+            ++|+.|  
T Consensus        86 ~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~------------~~Gl~p--  151 (275)
T d1dcia_          86 AWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEV------------DVGLAA--  151 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGG------------GGTSCC--
T ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEHHHHHHHHHCCCHHHCCCCCCCCHHC------------CCCCCC--
T ss_conf             544201001247889998865997999980185424599876337433436764321001------------224310--


Q ss_pred             EEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHH-HHHCCCCCHHHHHHCCCEEEECCH
Q ss_conf             961256655776447899999999999999999999999999742999-999999-880376548878736881575251
Q 005581          269 QRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKR-KEDIER-FINDGVYKVERLKEEGFITNVLYD  346 (690)
Q Consensus       269 ~~~G~yKsa~~p~~~~~~s~e~re~l~~~l~~~~~~f~~~Va~~Rg~~-~~~v~~-~~~~~~~~a~eAl~~GLID~i~~~  346 (690)
                             ..+.++.                            -.|-.. ...... +..+..++++||++.||||++...
T Consensus       152 -------~~~~~~~----------------------------~~~~~g~~~~~~~ll~~g~~~~a~eA~~~Glv~~v~~~  196 (275)
T d1dcia_         152 -------DVGTLQR----------------------------LPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPD  196 (275)
T ss_dssp             -------CSSHHHH----------------------------GGGTCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESS
T ss_pred             -------CCCCCCC----------------------------CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEEEEH
T ss_conf             -------0133333----------------------------43324543332221124333354565047974044201


Q ss_pred             HH-HHHHHHHH
Q ss_conf             68-99999998
Q 005581          347 DE-VISMLKER  356 (690)
Q Consensus       347 de-~~~~l~~~  356 (690)
                      ++ +...+.+.
T Consensus       197 ~~~l~~~~~~~  207 (275)
T d1dcia_         197 KDVMLNAAFAL  207 (275)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHCCCCC
T ss_conf             23320002222

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.5e-12  Score=95.03  Aligned_cols=168  Identities=16%  Similarity=0.091  Sum_probs=117.7

Q ss_pred             CCCEEEEEEECEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC----CCCHHHH---------------
Q ss_conf             689099999710314554334588999999999999845399921999990999----9898899---------------
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------------  197 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~sl~~i~~~L~~Aa~D~~IkaIvL~ids~----GG~~~~~---------------  197 (690)
                      .++.|++|+++.+    .+.+..+...+.++.+.|+.+..|+.+ .|++...+.    |+++...               
T Consensus         9 ~~~gi~~Itlnrp----~~~Nals~~~~~~l~~~l~~~~~d~~v-~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   83 (245)
T d2f6qa1           9 SEDGITKIMFNRP----KKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNN   83 (245)
T ss_dssp             EETTEEEEEECCG----GGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHHHHHHHH
T ss_pred             EECCEEEEEECCC----CCCCCCCHHHHHHHHHHHHHHHCCCCE-EEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCHH
T ss_conf             9899999997687----767898999999999999998639866-88636888524578630210013323332101002


Q ss_pred             -HHHHHHHHHHHHCCCEEEEEEC-CCCHHHHHHHHCCCEEEECCCCEEEEECCCEECCCHHHHHHHCCCEEEEEEECCCC
Q ss_conf             -9999999997635981999936-75224647853059068658874777023001000122653239400789612566
Q 005581          198 -EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYK  275 (690)
Q Consensus       198 -~eI~~aI~~~r~sgKpVvAyv~-~aas~gY~lAsaaD~I~a~P~s~igs~Gv~~~~~~~~~lL~KlGI~~~~~~~G~yK  275 (690)
                       ....+.+..+...+|||||.++ .|..+|..++++||.+++.+.+.++...+            ++|+.|         
T Consensus        84 ~~~~~~~~~~i~~~~kpvIa~v~G~a~GgG~~la~~~D~~ia~~~a~f~~pe~------------~~G~~p---------  142 (245)
T d2f6qa1          84 AVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFS------------HLGQSP---------  142 (245)
T ss_dssp             HHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTG------------GGTCCC---------
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEECCCC------------CCCCCC---------
T ss_conf             35777777664404786378777843345553000024655520676846534------------578786---------


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH-HHHCCCCCHHHHHHCCCEEEECCHHHHHHHHH
Q ss_conf             55776447899999999999999999999999999742999999999-88037654887873688157525168999999
Q 005581          276 SAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLK  354 (690)
Q Consensus       276 sa~~p~~~~~~s~e~re~l~~~l~~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~~~~a~eAl~~GLID~i~~~de~~~~l~  354 (690)
                      ..+..+.                      +...+      ......+ ++.+..++++||++.||||++...+++.+.+.
T Consensus       143 ~~g~~~~----------------------l~~~~------g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~  194 (245)
T d2f6qa1         143 EGCSSYT----------------------FPKIM------SPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVW  194 (245)
T ss_dssp             CTTHHHH----------------------HHHHH------CHHHHHHHHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHH
T ss_pred             CCCCHHH----------------------CCCCC------CCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             5221222----------------------35211------2202232202565422222123223224577306899999


Q ss_pred             HHHC
Q ss_conf             9818
Q 005581          355 ERLG  358 (690)
Q Consensus       355 ~~~g  358 (690)
                      +.+.
T Consensus       195 ~~a~  198 (245)
T d2f6qa1         195 TRLK  198 (245)
T ss_dssp             HHHH
T ss_pred             HHHH
T ss_conf             9999

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.39  E-value=1.4e-12  Score=95.23  Aligned_cols=159  Identities=13%  Similarity=0.114  Sum_probs=111.0

Q ss_pred             CCCEEEEEEECEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC----CCCCHHHH---------------
Q ss_conf             68909999971031455433458899999999999984539992199999099----99898899---------------
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV---------------  197 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~sl~~i~~~L~~Aa~D~~IkaIvL~ids----~GG~~~~~---------------  197 (690)
                      .++.|+.|.++.+=    ..+..+...+.++.++|+.+..|+++++|||...+    .|+++...               
T Consensus        11 ~~~~v~~Itlnrp~----~~Na~~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~   86 (266)
T d1pjha_          11 IEGPFFIIHLINPD----NLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSET   86 (266)
T ss_dssp             EETTEEEEEECCGG----GTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------CCSSHH
T ss_pred             EECCEEEEEECCCC----CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCHH
T ss_conf             99999999976888----67899999999999999999849996199995664210335009999722234321221012


Q ss_pred             --------HHHHHHHHHHHHCCCEEEEEEC-CCCHHHHHHHHCCCEEEECC-CCEEEEECCCEECCCHHHHHHHCCCEEE
Q ss_conf             --------9999999997635981999936-75224647853059068658-8747770230010001226532394007
Q 005581          198 --------EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPP-SAYFSLYGLTVQASFLGGVLEKVGIEPQ  267 (690)
Q Consensus       198 --------~eI~~aI~~~r~sgKpVvAyv~-~aas~gY~lAsaaD~I~a~P-~s~igs~Gv~~~~~~~~~lL~KlGI~~~  267 (690)
                              ......+..+....|||||.++ .|..+|..|+++||.+++.+ ++.++...+            ++|+-| 
T Consensus        87 ~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~------------~lGl~p-  153 (266)
T d1pjha_          87 SKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFA------------NLGLIT-  153 (266)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHH------------HHTCCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHCCCHHHHHHCCCCCCCCCC------------CCCCCC-
T ss_conf             6789999998999999999663224256421354534221001102233100111222233------------322232-


Q ss_pred             EEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH-HHHCCCCCHHHHHHCCCEEEECCH
Q ss_conf             8961256655776447899999999999999999999999999742999999999-880376548878736881575251
Q 005581          268 VQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYD  346 (690)
Q Consensus       268 ~~~~G~yKsa~~p~~~~~~s~e~re~l~~~l~~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~~~~a~eAl~~GLID~i~~~  346 (690)
                              ..+-.+                      .+...      +......+ ++.+..++++||+++||||++...
T Consensus       154 --------~~g~~~----------------------~l~r~------~g~~~a~~llltg~~~~a~eA~~~Glv~~v~~~  197 (266)
T d1pjha_         154 --------EGGTTV----------------------SLPLK------FGTNTTYECLMFNKPFKYDIMCENGFISKNFNM  197 (266)
T ss_dssp             --------CTTHHH----------------------HHHHH------HCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCC
T ss_pred             --------CCCCCC----------------------CCCCC------CCCCHHHHHHCCCCCCCHHHHHHCCCEEEEECC
T ss_conf             --------222222----------------------22222------211012334244886789999977997676386


Q ss_pred             HH
Q ss_conf             68
Q 005581          347 DE  348 (690)
Q Consensus       347 de  348 (690)
                      ++
T Consensus       198 ~~  199 (266)
T d1pjha_         198 PS  199 (266)
T ss_dssp             CT
T ss_pred             HH
T ss_conf             04

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=99.36  E-value=1.2e-12  Score=95.67  Aligned_cols=169  Identities=16%  Similarity=0.110  Sum_probs=115.9

Q ss_pred             CCCEEEEEEECEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC----CCCH--------HHH----HHH
Q ss_conf             689099999710314554334588999999999999845399921999990999----9898--------899----999
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGW--------GKV----EEI  200 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~sl~~i~~~L~~Aa~D~~IkaIvL~ids~----GG~~--------~~~----~eI  200 (690)
                      .++.|++|+++.+=.    .+..+...+.++.++|+++..|+++++|+|.....    |+++        ...    .+.
T Consensus        19 ~~~~v~~itln~p~~----~Nal~~~~~~el~~al~~~~~d~~v~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~   94 (249)
T d1szoa_          19 RDGGVLLVTVHTEGK----SLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLGTPHDWDEIIFEG   94 (249)
T ss_dssp             EETTEEEEEECBTTB----SCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCSSHHHHHHHHHHH
T ss_pred             EECCEEEEEECCCCC----CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHH
T ss_conf             989999999788874----6799999999999999999749886457651244322332014554224432001222221


Q ss_pred             HHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCEEEECCCCEEE-EECCCEECCCHHHHHHHCCCEEEEEEECCCCCCCC
Q ss_conf             99999976359819999367522464785305906865887477-70230010001226532394007896125665577
Q 005581          201 RRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFS-LYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD  279 (690)
Q Consensus       201 ~~aI~~~r~sgKpVvAyv~~aas~gY~lAsaaD~I~a~P~s~ig-s~Gv~~~~~~~~~lL~KlGI~~~~~~~G~yKsa~~  279 (690)
                      .+.+..+....||||+.+++++.||..++++||.+++.+.+.+. ...+            ++|+-|         ..+.
T Consensus        95 ~~l~~~i~~~~~pvIa~v~g~~~GG~~l~l~~D~ria~~~a~f~~~pe~------------~~g~~p---------~~g~  153 (249)
T d1szoa_          95 QRLLNNLLSIEVPVIAAVNGPVTNAPEIPVMSDIVLAAESATFQDGPHF------------PSGIVP---------GDGA  153 (249)
T ss_dssp             HHHHHHHHHCCSCEEEEECSCBCSSTHHHHTSSEEEEETTCEEECTTSG------------GGTCCC---------TTTH
T ss_pred             HHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECC------------CCCCCC---------CCCC
T ss_conf             0000000147643112221333211233333332323688679874033------------443235---------5433


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH-HHHCCCCCHHHHHHCCCEEEECCHHHHHHHHHHHHC
Q ss_conf             6447899999999999999999999999999742999999999-880376548878736881575251689999999818
Q 005581          280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERLG  358 (690)
Q Consensus       280 p~~~~~~s~e~re~l~~~l~~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~~~~a~eAl~~GLID~i~~~de~~~~l~~~~g  358 (690)
                      .           ..           +      .|.+......+ ++.+..++++||++.||||++...+++.+.+.+.+.
T Consensus       154 ~-----------~~-----------l------~r~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~  205 (249)
T d1szoa_         154 H-----------VV-----------W------PHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQELLPRAWELAR  205 (249)
T ss_dssp             H-----------HH-----------H------HHHHCHHHHHHHHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHHHHHH
T ss_pred             C-----------CC-----------C------CCCCCCCCEEEECCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf             2-----------23-----------3------233672101210136777777899982996766687899999999999

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=6.1e-12  Score=91.20  Aligned_cols=167  Identities=13%  Similarity=0.127  Sum_probs=119.2

Q ss_pred             CCCEEEEEEECEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC------CCCCHHHH-----------HH
Q ss_conf             68909999971031455433458899999999999984539992199999099------99898899-----------99
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP------LSCGWGKV-----------EE  199 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~sl~~i~~~L~~Aa~D~~IkaIvL~ids------~GG~~~~~-----------~e  199 (690)
                      .++.|++|+++.+=    ..+..+...+.++.++|+++. ++.+++|||...+      .|+++...           ..
T Consensus        10 ~~~~v~~Itlnrp~----~~Nal~~~~~~~l~~al~~~~-~~~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~   84 (261)
T d1ef8a_          10 TINKVAVIEFNYGR----KLNALSKVFIDDLMQALSDLN-RPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDP   84 (261)
T ss_dssp             EETTEEEEEECCGG----GTTCCCHHHHHHHHHHHHHTC-STTCCEEEEECCTTCSEEECCSCSTTC-----CTTCTTSH
T ss_pred             EECCEEEEEECCCC----CCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99999999974877----779999999999999999974-7997799972012311112442222223577531000130


Q ss_pred             HHHHHHHHHHCCCEEEEEEC-CCCHHHHHHHHCCCEEEECCCCEEEEECCCEECCCHHHHHHHCCCEEEEEEECCCCCCC
Q ss_conf             99999997635981999936-75224647853059068658874777023001000122653239400789612566557
Q 005581          200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG  278 (690)
Q Consensus       200 I~~aI~~~r~sgKpVvAyv~-~aas~gY~lAsaaD~I~a~P~s~igs~Gv~~~~~~~~~lL~KlGI~~~~~~~G~yKsa~  278 (690)
                      +.+.+..+.+..|||||.++ .|..+|..|+++||.+++.+.+.++...+            ++|+-+.         .+
T Consensus        85 ~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~~~~pe~------------~~Gl~~~---------~~  143 (261)
T d1ef8a_          85 LRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPV------------NLGVPYN---------LV  143 (261)
T ss_dssp             HHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHH------------HHTCCCC---------HH
T ss_pred             HHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC------------CCCCCCC---------CC
T ss_conf             25667788757600210243201010134333234410467677765422------------4342233---------32


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH-HHHCCCCCHHHHHHCCCEEEECCHHHHHHHHHHHH
Q ss_conf             76447899999999999999999999999999742999999999-88037654887873688157525168999999981
Q 005581          279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL  357 (690)
Q Consensus       279 ~p~~~~~~s~e~re~l~~~l~~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~~~~a~eAl~~GLID~i~~~de~~~~l~~~~  357 (690)
                      ..                            ..-.|.+......+ ++.+..++++||++.||||++...+++.+.+.+.+
T Consensus       144 ~~----------------------------~~l~r~~g~~~a~~~~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a  195 (261)
T d1ef8a_         144 GI----------------------------HNLTRDAGFHIVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMA  195 (261)
T ss_dssp             HH----------------------------HTTSSSSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHHHH
T ss_pred             CC----------------------------CCCCCCCCCCCCCCCCCCCCEECHHHHHHCCCCCEEEECHHHHHHHHHHH
T ss_conf             22----------------------------22323567632112224476276999987099524520022101268899

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.34  E-value=2.8e-12  Score=93.35  Aligned_cols=167  Identities=13%  Similarity=0.157  Sum_probs=114.6

Q ss_pred             CCCEEEEEEECEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC-----CCCHH--------HH----HH
Q ss_conf             689099999710314554334588999999999999845399921999990999-----98988--------99----99
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWG--------KV----EE  199 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~sl~~i~~~L~~Aa~D~~IkaIvL~ids~-----GG~~~--------~~----~e  199 (690)
                      ..+.|++|+++.+  +.   +-.+...+.++.++|+.+..|+.+++|+|+-+++     |+++.        ..    ..
T Consensus        10 ~~~gIa~itln~p--~~---Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~~Fs~G~Dl~~~~~~~~~~~~~~~~~   84 (249)
T d1sg4a1          10 AGAGVAVMKFKNP--PV---NSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKA   84 (249)
T ss_dssp             TTTTEEEEEECCT--TT---TEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHHHHHH
T ss_pred             CCCCEEEEEECCC--CC---CCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCHH
T ss_conf             8998899997899--86---889999999999999999729996689998534306742654332213453322111102


Q ss_pred             HHHHHHHHHHCCCEEEEEEC-CCCHHHHHHHHCCCEEEECCCCEE--EEECCCEECCCHHHHHHHCCCEEEEEEECCCCC
Q ss_conf             99999997635981999936-752246478530590686588747--770230010001226532394007896125665
Q 005581          200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYF--SLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS  276 (690)
Q Consensus       200 I~~aI~~~r~sgKpVvAyv~-~aas~gY~lAsaaD~I~a~P~s~i--gs~Gv~~~~~~~~~lL~KlGI~~~~~~~G~yKs  276 (690)
                      +.+.+..++..+|||||.++ .|..+|..|+++||.+++.+.+.+  +...+            ++|+.|         .
T Consensus        85 ~~~~~~~l~~~~kpvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~pe~------------~~Gl~p---------~  143 (249)
T d1sg4a1          85 VQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNET------------QLGIIA---------P  143 (249)
T ss_dssp             HHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGG------------GGTCCC---------C
T ss_pred             HHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC------------CCCCCC---------C
T ss_conf             5788775303763200001023544443321112411120133211212344------------444333---------2


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH-HHHCCCCCHHHHHHCCCEEEECCHHHHHHHHHH
Q ss_conf             5776447899999999999999999999999999742999999999-880376548878736881575251689999999
Q 005581          277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKE  355 (690)
Q Consensus       277 a~~p~~~~~~s~e~re~l~~~l~~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~~~~a~eAl~~GLID~i~~~de~~~~l~~  355 (690)
                      .+..           ..           +...      +......+ ++.+..+++++|++.||||++...+++.+.+.+
T Consensus       144 ~g~~-----------~~-----------l~~~------iG~~~a~~lll~g~~~~a~~A~~~Glv~~v~~~~~l~~~a~~  195 (249)
T d1sg4a1         144 FWLK-----------DT-----------LENT------IGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALS  195 (249)
T ss_dssp             HHHH-----------HH-----------HHHH------HCHHHHHHHHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHH
T ss_pred             CCCC-----------CC-----------CCCC------CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf             2112-----------12-----------2223------342212222234654207888753244125785899999999


Q ss_pred             HH
Q ss_conf             81
Q 005581          356 RL  357 (690)
Q Consensus       356 ~~  357 (690)
                      .+
T Consensus       196 ~a  197 (249)
T d1sg4a1         196 AI  197 (249)
T ss_dssp             HH
T ss_pred             HH
T ss_conf             99

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=8.2e-12  Score=90.36  Aligned_cols=167  Identities=14%  Similarity=0.150  Sum_probs=116.1

Q ss_pred             CCCEEEEEEECE-EECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC----CCCHHHH--------------
Q ss_conf             689099999710-314554334588999999999999845399921999990999----9898899--------------
Q 005581          137 RKGSVLTMKLRG-QIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV--------------  197 (690)
Q Consensus       137 ~~~~VlvI~l~G-~I~~~~~~~~~~~~sl~~i~~~L~~Aa~D~~IkaIvL~ids~----GG~~~~~--------------  197 (690)
                      .++.|+.|.++. +    ...+..+...+.++.++|+++..|+ +++|||...+.    |++....              
T Consensus         8 ~~~gi~~i~l~~rp----~~~Nals~~~~~el~~al~~~~~d~-~~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~   82 (258)
T d2fw2a1           8 KEDGFTQIVLSTRS----TEKNALNTEVIKEMVNALNSAAADD-SKLVLFSAAGSVFCCGLDFGYFVRHLRNDRNTASLE   82 (258)
T ss_dssp             EETTEEEEEECCSS----SSTTCBCHHHHHHHHHHHHHHHHSS-CSEEEEEECSSCSBCCBCHHHHHHHHHHCHHHHHHH
T ss_pred             EECCEEEEEECCCC----CCCCCCCHHHHHHHHHHHHHHHCCC-CEEEEEECCCCCCCCCCCCCHHHHCCCCCCCCHHHH
T ss_conf             98998999988897----4468989999999999999987199-779999557421023432111110012211102467


Q ss_pred             --HHHHHHHHHHHHCCCEEEEEECC-CCHHHHHHHHCCCEEEECCCCEEEEECCCEECCCHHHHHHHCCCEEEEEEECCC
Q ss_conf             --99999999976359819999367-522464785305906865887477702300100012265323940078961256
Q 005581          198 --EEIRRHVVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKY  274 (690)
Q Consensus       198 --~eI~~aI~~~r~sgKpVvAyv~~-aas~gY~lAsaaD~I~a~P~s~igs~Gv~~~~~~~~~lL~KlGI~~~~~~~G~y  274 (690)
                        ..+.+.+..+...+|||||.+++ |..+|..++++||.+++.+.+.|+...+            ++|+-|        
T Consensus        83 ~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~------------~~Gl~p--------  142 (258)
T d2fw2a1          83 MVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYT------------TFGQSP--------  142 (258)
T ss_dssp             HHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHH------------HHTCCC--------
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCEECCCCEEECCC------------CCCCCC--------
T ss_conf             777889998763102101342003445455433233444002101332120223------------366434--------


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH-HHHCCCCCHHHHHHCCCEEEECCHHHHHHHH
Q ss_conf             655776447899999999999999999999999999742999999999-8803765488787368815752516899999
Q 005581          275 KSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISML  353 (690)
Q Consensus       275 Ksa~~p~~~~~~s~e~re~l~~~l~~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~~~~a~eAl~~GLID~i~~~de~~~~l  353 (690)
                       ..+.++.                      +.      |-+......+ ++.+..+++++|++.||||++...+++.+.+
T Consensus       143 -~~g~~~~----------------------l~------r~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a  193 (258)
T d2fw2a1         143 -DGCSSIT----------------------FP------KMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEV  193 (258)
T ss_dssp             -CTTHHHH----------------------HH------HHHCHHHHHHHHTTCCEEEHHHHHHTTSCSEEECSTTHHHHH
T ss_pred             -CCCCCCC----------------------CH------HHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             -5333331----------------------05------551863301021147643212212333321245533233322


Q ss_pred             HHHH
Q ss_conf             9981
Q 005581          354 KERL  357 (690)
Q Consensus       354 ~~~~  357 (690)
                      .+.+
T Consensus       194 ~~~a  197 (258)
T d2fw2a1         194 MIQI  197 (258)
T ss_dssp             HHHH
T ss_pred             CHHH
T ss_conf             1034

>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=98.04  E-value=0.00011  Score=44.82  Aligned_cols=87  Identities=17%  Similarity=0.109  Sum_probs=63.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHH-------HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHH
Q ss_conf             8883017999999999988079956899981699951443-------168899999861999799998860117999999
Q 005581          408 LSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLLSESKPVIASMSDVAASGGYYMA  480 (690)
Q Consensus       408 ~~~~~~~~~~l~~~l~~a~~d~~VkaVVLrinSpGG~~~a-------s~~i~~~i~~~~~~KPVIA~i~g~AaSGGy~iA  480 (690)
                      .+.+....+.+..+++.|.+.. +- +|.-++|.|+....       ...++..+.++....|+|+.+.|.|++|+.|.+
T Consensus       103 GS~g~~~~~K~~~a~e~A~~~~-lP-lV~l~~sgG~r~~eg~~~l~~~~~~~~~~~~ls~~vP~i~vv~Gp~~GG~a~~~  180 (253)
T d1on3a1         103 GSAGETQSTKVVETMEQALLTG-TP-FLFFYDSGGARIQEGIDSLSGYGKMFFANVKLSGVVPQIAIIAGPCAGGASYSP  180 (253)
T ss_dssp             GCBCHHHHHHHHHHHHHHHHHT-CC-EEEEEEECSBCGGGTHHHHHHHHHHHHHHHHHTTTSCEEEEEEEEEESGGGHHH
T ss_pred             CCCEECCCCHHHHHHHHHHHCC-CC-EEEEEECCCCCCCCCCEECCCCCEEHHHHHHHHCCCEEEEEEECCCCCCEEECC
T ss_conf             5520212411235677775138-97-289872588755665201135641048888773104089998167551123011


Q ss_pred             HHCCEEEEECCCEECC
Q ss_conf             7639578706750001
Q 005581          481 MAAGTILAENLTLTGS  496 (690)
Q Consensus       481 ~aaD~IvA~p~t~~GS  496 (690)
                      +.||.+++.+.+.++-
T Consensus       181 ~~~d~vi~~~~a~i~~  196 (253)
T d1on3a1         181 ALTDFIIMTKKAHMFI  196 (253)
T ss_dssp             HHSSEEEEETTCEEES
T ss_pred             CHHHHEECCCCCEEEE
T ss_conf             1111100134416985

>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.02  E-value=0.00029  Score=42.28  Aligned_cols=129  Identities=16%  Similarity=0.147  Sum_probs=84.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHH-------HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHH
Q ss_conf             883017999999999988079956899981699951443-------1688999998619997999988601179999997
Q 005581          409 SSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLLSESKPVIASMSDVAASGGYYMAM  481 (690)
Q Consensus       409 ~~~~~~~~~l~~~l~~a~~d~~VkaVVLrinSpGG~~~a-------s~~i~~~i~~~~~~KPVIA~i~g~AaSGGy~iA~  481 (690)
                      +.+....+.+....+.|.++. +- +|.-++|.|+..-.       ...++......+...|+|+.+.|.|++|+.|.++
T Consensus       104 S~g~~~g~K~~ra~e~A~~~~-lP-~I~l~dsgGar~~eg~~~~~~~~~~~~~~~~~~~~vP~I~~v~G~~~gG~a~~~~  181 (258)
T d2a7sa1         104 SLGEVYGEKIVKVQELAIKTG-RP-LIGINDGAGARIQEGVVSLGLYSRIFRNNILASGVIPQISLIMGAAAGGHVYSPA  181 (258)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHT-CC-EEEEECCCSBCGGGCTHHHHHHHHHHHHHHHHTTTSCEEEEECSCCBSGGGHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHCC-CC-EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHH
T ss_conf             133245668889899987659-86-6998636885556554444311158899999758998899993676608999988


Q ss_pred             HCCEEEE-ECCCEECCCCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6395787-067500012442466654779987098321230430145532039999956999999999999999999998
Q 005581          482 AAGTILA-ENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAA  560 (690)
Q Consensus       482 aaD~IvA-~p~t~~GSIGV~~~~~~~~~l~~klGv~~~~i~~g~~k~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va  560 (690)
                      .||.+++ .+.+.++--|.                           .                                 
T Consensus       182 ~~d~~vm~~~~a~i~~aGP---------------------------~---------------------------------  201 (258)
T d2a7sa1         182 LTDFVIMVDQTSQMFITGP---------------------------D---------------------------------  201 (258)
T ss_dssp             HSSEEEEEBTTBBCBSSCH---------------------------H---------------------------------
T ss_pred             HCCCEEEECCCEEEECCCH---------------------------H---------------------------------
T ss_conf             5500176147357871683---------------------------6---------------------------------


Q ss_pred             HHCCCCHHHHHHHHCCCCCCH-------HHHHHCCCCCCCCC-HHHHHHHHHHHCC
Q ss_conf             413999989999864986558-------87987697642159-5899999999908
Q 005581          561 FSRSMTVDKMEEYAQGRVWTG-------NDAASRGLVDALGG-FSRAVAIAKQKAN  608 (690)
Q Consensus       561 ~~R~~~~~~~~~i~~Grv~tg-------~eAle~GLVD~ig~-~~~ai~~a~~~a~  608 (690)
                              .++ -+.|...+.       ..+.+.|.+|.+.. .+++++.++++..
T Consensus       202 --------vV~-~~~ge~~~~eeLGga~~h~~~sG~~D~v~~de~~a~~~~r~~Ls  248 (258)
T d2a7sa1         202 --------VIK-TVTGEEVTMEELGGAHTHMAKSGTAHYAASGEQDAFDYVRELLS  248 (258)
T ss_dssp             --------HHH-HHHCCCCCHHHHHBHHHHHHTSCCCSEEESSHHHHHHHHHHHHH
T ss_pred             --------HHH-HHCCCCCCHHHCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHH
T ss_conf             --------788-74287368466349867113046361675899999999999997

>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=0.00025  Score=42.65  Aligned_cols=89  Identities=19%  Similarity=0.210  Sum_probs=60.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHH----HHH---HHHHHHHH-CCCCCEEEEECCCCCHHHHH-
Q ss_conf             8883017999999999988079956899981699951443----168---89999986-19997999988601179999-
Q 005581          408 LSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA----SDL---MWREIRLL-SESKPVIASMSDVAASGGYY-  478 (690)
Q Consensus       408 ~~~~~~~~~~l~~~l~~a~~d~~VkaVVLrinSpGG~~~a----s~~---i~~~i~~~-~~~KPVIA~i~g~AaSGGy~-  478 (690)
                      .+.+....+.+.++++.|.+.. +-. |.-.+|+|+....    ...   +...+..+ ....|+|+.+.|.+++|+++ 
T Consensus       110 GS~g~~~~~Ki~~a~e~A~~~~-lPl-I~~~~sgG~r~~e~~~sl~~~~~~~~~~~~~~~~~vP~I~v~~g~~~GG~aa~  187 (263)
T d2f9yb1         110 GSMGSVVGARFVRAVEQALEDN-CPL-ICFSASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTMGGVSAS  187 (263)
T ss_dssp             TCBCTHHHHHHHHHHHHHHHHT-CCE-EEEEEESSBCGGGTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCC-CCE-EEEECCCCCCCCCCCCHHHCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
T ss_conf             5556321567758999999709-986-88844787433443102101035789999998679965999617855288766


Q ss_pred             HHHHCCEEEEECCCEECCCC
Q ss_conf             99763957870675000124
Q 005581          479 MAMAAGTILAENLTLTGSIG  498 (690)
Q Consensus       479 iA~aaD~IvA~p~t~~GSIG  498 (690)
                      .++.+|.+++.+.+.+|--|
T Consensus       188 ~~~~~d~i~~~~~s~i~~aG  207 (263)
T d2f9yb1         188 FAMLGDLNIAEPKALIGFAG  207 (263)
T ss_dssp             GGGCCSEEEECTTCBEESSC
T ss_pred             HHHCCCEEEEECCEEEECCC
T ss_conf             55167468631122454259

>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.90  E-value=0.00051  Score=40.67  Aligned_cols=86  Identities=13%  Similarity=0.138  Sum_probs=59.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHH-------HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHH
Q ss_conf             8830179999999999880799568999816999514431-------688999998619997999988601179999997
Q 005581          409 SSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALAS-------DLMWREIRLLSESKPVIASMSDVAASGGYYMAM  481 (690)
Q Consensus       409 ~~~~~~~~~l~~~l~~a~~d~~VkaVVLrinSpGG~~~as-------~~i~~~i~~~~~~KPVIA~i~g~AaSGGy~iA~  481 (690)
                      +.+....+.+...++.|.+.. + -+|.-++|+|+..-..       ..++..+..+....|+|+.+.|.|++|+.|..+
T Consensus       103 S~g~~~~~K~~r~~e~A~~~~-l-PlI~l~dsgGarm~e~~~~~~~~~~~~~~~~~~s~~vP~I~vv~G~~~gG~a~~~~  180 (258)
T d1xnya1         103 ALGEVYGQKIVKVMDFALKTG-C-PVVGINDSGGARIQEGVASLGAYGEIFRRNTHASGVIPQISLVVGPCAGGAVYSPA  180 (258)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHT-C-CEEEEECCCSBCGGGTHHHHHHHHHHHHHHHHTTTTSCEEEEECSEEEGGGGHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHCC-C-CEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHH
T ss_conf             321233799999999999719-8-65998637886667550023324689999998748998899980786704888877


Q ss_pred             HCCEEE-EECCCEECC
Q ss_conf             639578-706750001
Q 005581          482 AAGTIL-AENLTLTGS  496 (690)
Q Consensus       482 aaD~Iv-A~p~t~~GS  496 (690)
                      .||.++ +.+.+.++-
T Consensus       181 ~~~~vim~~~~a~i~~  196 (258)
T d1xnya1         181 ITDFTVMVDQTSHMFI  196 (258)
T ss_dssp             HSSEEEEETTTCEEES
T ss_pred             HCCCHHHCCCCEEEEE
T ss_conf             3610211136427994

>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.82  E-value=0.00059  Score=40.27  Aligned_cols=130  Identities=15%  Similarity=0.131  Sum_probs=85.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHH-------HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHH
Q ss_conf             883017999999999988079956899981699951443-------1688999998619997999988601179999997
Q 005581          409 SSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLLSESKPVIASMSDVAASGGYYMAM  481 (690)
Q Consensus       409 ~~~~~~~~~l~~~l~~a~~d~~VkaVVLrinSpGG~~~a-------s~~i~~~i~~~~~~KPVIA~i~g~AaSGGy~iA~  481 (690)
                      +......+.+...++.|.+.. + -+|.-.+|+|+....       ...++.....++...|+|+.+.|.|++|+.|..+
T Consensus       101 s~g~~~~~K~~r~~e~A~~~~-~-P~I~~~dsgG~r~~e~~~~l~~~~~~~~~~~~~s~~iP~I~vv~G~~~gG~a~~~~  178 (251)
T d1vrga1         101 SLGEMHAKKIVKLLDLALKMG-I-PVIGINDSGGARIQEGVDALAGYGEIFLRNTLASGVVPQITVIAGPCAGGAVYSPA  178 (251)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHT-C-CEEEEEEECSBCGGGTHHHHHHHHHHHHHHHHHTTTSCEEEEEEEEEBGGGGHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHCC-C-CEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCEEHHH
T ss_conf             456678999999999999809-9-88999747876556542010242599999999779998899971675625200123


Q ss_pred             HCCEEEEE-CCCEECCCCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             63957870-67500012442466654779987098321230430145532039999956999999999999999999998
Q 005581          482 AAGTILAE-NLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAA  560 (690)
Q Consensus       482 aaD~IvA~-p~t~~GSIGV~~~~~~~~~l~~klGv~~~~i~~g~~k~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va  560 (690)
                      .||.+++. +.+.++.-|                         +                                    
T Consensus       179 ~~d~~im~~~~a~i~~aG-------------------------p------------------------------------  197 (251)
T d1vrga1         179 LTDFIVMVDQTARMFITG-------------------------P------------------------------------  197 (251)
T ss_dssp             HSSEEEEETTTCBCBSSC-------------------------H------------------------------------
T ss_pred             HCCEEEEECCCEEEEECC-------------------------C------------------------------------
T ss_conf             173399970632477428-------------------------1------------------------------------


Q ss_pred             HHCCCCHHHHHHHHCCCCCCHHH-------HHHCCCCCCCCC-HHHHHHHHHHHCCC
Q ss_conf             41399998999986498655887-------987697642159-58999999999089
Q 005581          561 FSRSMTVDKMEEYAQGRVWTGND-------AASRGLVDALGG-FSRAVAIAKQKANI  609 (690)
Q Consensus       561 ~~R~~~~~~~~~i~~Grv~tg~e-------Ale~GLVD~ig~-~~~ai~~a~~~a~l  609 (690)
                              .+-+.+.|..++.++       +...|.+|.+.. .+++++.++++...
T Consensus       198 --------~vv~~~~ge~~~~eelGga~~h~~~sG~~D~v~~de~~a~~~ir~lLs~  246 (251)
T d1vrga1         198 --------NVIKAVTGEEISQEDLGGAMVHNQKSGNAHFLADNDEKAMSLVRTLLSY  246 (251)
T ss_dssp             --------HHHHHHHCCCCCHHHHHBHHHHHHTSCCCSEEESSHHHHHHHHHHHHTT
T ss_pred             --------HHHHHHCCCCCCHHHCCCHHHHHHCCCCCEEEECCHHHHHHHHHHHHHH
T ss_conf             --------5666540785794771536665522524669988999999999999976

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=0.00016  Score=43.86  Aligned_cols=82  Identities=17%  Similarity=0.194  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHH-------HHHHHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHCCE
Q ss_conf             799999999998807995689998169995144-------316889999986-199979999886011799999976395
Q 005581          414 IGEQLIEKIRKVRESKRYKAAIIRIDSPGGDAL-------ASDLMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGT  485 (690)
Q Consensus       414 ~~~~l~~~l~~a~~d~~VkaVVLrinSpGG~~~-------as~~i~~~i~~~-~~~KPVIA~i~g~AaSGGy~iA~aaD~  485 (690)
                      .+..-.+.++.+.+- + --||.-+|+||-.+.       ....+.+.+..+ ....|+|+.|-|-+.|||++..+.+|.
T Consensus       136 ~~rKa~r~~~~a~~~-~-~Pii~~vDtpG~~~g~~~E~~g~~~~~a~~~~~~~~~~vP~i~vv~g~g~~gga~a~~~~d~  213 (316)
T d2f9ya1         136 GYRKALRLMQMAERF-K-MPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGDK  213 (316)
T ss_dssp             HHHHHHHHHHHHHHT-T-CCEEEEEEESCSCCSHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEEHHHHHTTCCCSE
T ss_pred             HHHHHHHHHHHHHHC-C-CCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHHCHHHHHHHHHHH
T ss_conf             999999999999870-8-40489874676567731222458999999999998578746887774431213665655457


Q ss_pred             EEEECCCEECCC
Q ss_conf             787067500012
Q 005581          486 ILAENLTLTGSI  497 (690)
Q Consensus       486 IvA~p~t~~GSI  497 (690)
                      ++|-++++...+
T Consensus       214 v~m~~~a~~svi  225 (316)
T d2f9ya1         214 VNMLQYSTYSVI  225 (316)
T ss_dssp             EEECTTCEEESS
T ss_pred             HHHHHHHHHHHC
T ss_conf             788766687424

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=8.2e-05  Score=45.74  Aligned_cols=123  Identities=15%  Similarity=0.104  Sum_probs=82.7

Q ss_pred             CHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHH-------HHHHHHHHHHHHHCCCEEEEEEC-CCCHHHHHHHHCCCE
Q ss_conf             9999999999845399921999990999989889-------99999999997635981999936-752246478530590
Q 005581          163 SLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGK-------VEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEE  234 (690)
Q Consensus       163 sl~~i~~~L~~Aa~D~~IkaIvL~ids~GG~~~~-------~~eI~~aI~~~r~sgKpVvAyv~-~aas~gY~lAsaaD~  234 (690)
                      ++..-.+.++.|..- ++- |+.-+|+||..+..       ++.|.+.+..+-+...|+|+.+- .+.|+||+..+.+|.
T Consensus       136 ~~rKa~r~~~~a~~~-~~P-ii~~vDtpG~~~g~~~E~~g~~~~~a~~~~~~~~~~vP~i~vv~g~g~~gga~a~~~~d~  213 (316)
T d2f9ya1         136 GYRKALRLMQMAERF-KMP-IITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGDK  213 (316)
T ss_dssp             HHHHHHHHHHHHHHT-TCC-EEEEEEESCSCCSHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEEHHHHHTTCCCSE
T ss_pred             HHHHHHHHHHHHHHC-CCC-EEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHHCHHHHHHHHHHH
T ss_conf             999999999999870-840-489874676567731222458999999999998578746887774431213665655457


Q ss_pred             EEECCCCEEEEECCCEECCCHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             68658874777023001000122653239400789612566557764478999999999999999999999999997429
Q 005581          235 LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKG  314 (690)
Q Consensus       235 I~a~P~s~igs~Gv~~~~~~~~~lL~KlGI~~~~~~~G~yKsa~~p~~~~~~s~e~re~l~~~l~~~~~~f~~~Va~~Rg  314 (690)
                      ++|-+.+....+++                                        |...              ..+.    
T Consensus       214 v~m~~~a~~svisp----------------------------------------Eg~A--------------sILw----  235 (316)
T d2f9ya1         214 VNMLQYSTYSVISP----------------------------------------EGCA--------------SILW----  235 (316)
T ss_dssp             EEECTTCEEESSCH----------------------------------------HHHH--------------HHHS----
T ss_pred             HHHHHHHHHHHCCC----------------------------------------HHHH--------------HHHH----
T ss_conf             78876668742461----------------------------------------6556--------------6750----


Q ss_pred             CCHHHHHHHHHCCCCCHHHHHHCCCEEEECC
Q ss_conf             9999999988037654887873688157525
Q 005581          315 KRKEDIERFINDGVYKVERLKEEGFITNVLY  345 (690)
Q Consensus       315 ~~~~~v~~~~~~~~~~a~eAl~~GLID~i~~  345 (690)
                      ++.+...+.++..-.++++.+++|+||+|..
T Consensus       236 kd~~~a~eaAealklta~dL~~lgiIDeII~  266 (316)
T d2f9ya1         236 KSADKAPLAAEAMGIIRPRLKELKLIDSIIP  266 (316)
T ss_dssp             SCSTTHHHHHHHHTCSHHHHHTTTSCSCCCC
T ss_pred             CCCHHHCCHHHHHHHHHHHHHHCCCHHHCCC
T ss_conf             1110000048887540677987692450126

>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=97.22  E-value=0.0052  Score=34.22  Aligned_cols=85  Identities=14%  Similarity=0.114  Sum_probs=59.6

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHH----------HHHHHHHHHH-CCCCCEEEEECCCCCHHHHH
Q ss_conf             830179999999999880799568999816999514431----------6889999986-19997999988601179999
Q 005581          410 SSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALAS----------DLMWREIRLL-SESKPVIASMSDVAASGGYY  478 (690)
Q Consensus       410 ~~~~~~~~l~~~l~~a~~d~~VkaVVLrinSpGG~~~as----------~~i~~~i~~~-~~~KPVIA~i~g~AaSGGy~  478 (690)
                      ......+.+.+.++-|.+.. +- +|.-+||+|+.....          ..+...+.++ ....|+|+.+-|.|.+||-|
T Consensus       120 ~~~~~~~K~~r~~~lA~~~~-lP-~I~l~ds~Ga~~~~~~e~~~~~~~~g~~~~~~a~ls~~~VP~Isvv~G~~~gGgAy  197 (287)
T d1pixa2         120 WVPGQAECLLRASDTAKTLH-VP-LVYVLNCSGVKFDEQEKVYPNRRGGGTPFFRNAELNQLGIPVIVGIYGTNPAGGGY  197 (287)
T ss_dssp             ECTTHHHHHHHHHHHHHHHT-CC-EEEEECCCEECGGGHHHHSSSTTSTTHHHHHHHHHHHTTCCEEEEECSEEETHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHCC-CC-EEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEE
T ss_conf             32558899998887665347-97-89996477666775103213124678999999998626987689833776532001


Q ss_pred             HHHHCCEEEEECCCEECC
Q ss_conf             997639578706750001
Q 005581          479 MAMAAGTILAENLTLTGS  496 (690)
Q Consensus       479 iA~aaD~IvA~p~t~~GS  496 (690)
                      .+++||.|++.+.+.++-
T Consensus       198 ~~~~~~~i~~~~~a~i~~  215 (287)
T d1pixa2         198 HSISPTVIIAHEKANMAV  215 (287)
T ss_dssp             HHHSSSEEEEETTCEEES
T ss_pred             CCCCCEEEEECCCEEEEE
T ss_conf             022423687438759999

>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.03  E-value=0.0079  Score=33.09  Aligned_cols=85  Identities=18%  Similarity=0.114  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHH---H----HHHHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHH---
Q ss_conf             1799999999998807995689998169995144---3----16889999986-19997999988601179999997---
Q 005581          413 IIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDAL---A----SDLMWREIRLL-SESKPVIASMSDVAASGGYYMAM---  481 (690)
Q Consensus       413 ~~~~~l~~~l~~a~~d~~VkaVVLrinSpGG~~~---a----s~~i~~~i~~~-~~~KPVIA~i~g~AaSGGy~iA~---  481 (690)
                      ...+...+.++-+... ++- ||.-+|+||=.+.   .    ...+.+.+..+ ....|.++.+-+-+.|||||..+   
T Consensus        84 ~~a~Ka~~fi~lc~~~-~iP-li~l~d~pGf~~G~~~E~~g~~~~ga~~~~a~a~~~vPkitvi~~~~~Gga~~~m~~~~  161 (263)
T d1xnya2          84 TASEKAARFVRTCDAF-NVP-VLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVITRKAFGGAYDVMGSKH  161 (263)
T ss_dssp             HHHHHHHHHHHHHHHT-TCC-EEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGG
T ss_pred             HHHHHHHHHHHHHHHH-CCC-EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEECCCCCC
T ss_conf             2599999999999971-985-69862024454354689874899999999998716897689986576453100247766


Q ss_pred             -HCCEEEEECCCEECCCCC
Q ss_conf             -639578706750001244
Q 005581          482 -AAGTILAENLTLTGSIGV  499 (690)
Q Consensus       482 -aaD~IvA~p~t~~GSIGV  499 (690)
                       .+|.++|-|++.+|.+|.
T Consensus       162 ~~~d~~~awP~a~~gvm~p  180 (263)
T d1xnya2         162 LGADLNLAWPTAQIAVMGA  180 (263)
T ss_dssp             GTCSEEEECTTCEEESSCH
T ss_pred             CCCCEEEECCHHHHHCCCH
T ss_conf             6884789713034324688

>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.0037  Score=35.19  Aligned_cols=86  Identities=12%  Similarity=0.028  Sum_probs=62.0

Q ss_pred             CCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC-------HHHHHHHHHHHHHHHHCCCEEEEEEC-CCCH-HHHHHHHC
Q ss_conf             999999999999845399921999990999989-------88999999999997635981999936-7522-46478530
Q 005581          161 GLSLPQICENFVKAAYDPRIVGIYLHIEPLSCG-------WGKVEEIRRHVVDFKKSGKFIIGYVP-VCGE-KEYYLACA  231 (690)
Q Consensus       161 ~~sl~~i~~~L~~Aa~D~~IkaIvL~ids~GG~-------~~~~~eI~~aI~~~r~sgKpVvAyv~-~aas-~gY~lAsa  231 (690)
                      ..+...+..+++.|.+. ++--|.+ .+|.|+.       ..+...+..+...++..+.|+|+.+. .++. +.|..++.
T Consensus       114 ~~~~~Ki~~a~e~A~~~-~lPlI~~-~~sgG~r~~e~~~sl~~~~~~~~~~~~~~~~~vP~I~v~~g~~~GG~aa~~~~~  191 (263)
T d2f9yb1         114 SVVGARFVRAVEQALED-NCPLICF-SASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTMGGVSASFAML  191 (263)
T ss_dssp             THHHHHHHHHHHHHHHH-TCCEEEE-EEESSBCGGGTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEHHHHTTGGGC
T ss_pred             CCHHHHHHHHHHHHHHC-CCCEEEE-ECCCCCCCCCCCCHHHCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHC
T ss_conf             32156775899999970-9986888-447874334431021010357899999986799659996178552887665516


Q ss_pred             CCEEEECCCCEEEEECC
Q ss_conf             59068658874777023
Q 005581          232 CEELYAPPSAYFSLYGL  248 (690)
Q Consensus       232 aD~I~a~P~s~igs~Gv  248 (690)
                      +|.|++.|.+.++..|.
T Consensus       192 ~d~i~~~~~s~i~~aGP  208 (263)
T d2f9yb1         192 GDLNIAEPKALIGFAGP  208 (263)
T ss_dssp             CSEEEECTTCBEESSCH
T ss_pred             CCEEEEECCEEEECCCH
T ss_conf             74686311224542598

>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.52  E-value=0.019  Score=30.59  Aligned_cols=146  Identities=10%  Similarity=0.095  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHH-------HHHHHHHHHHHHCCCEEEEEEC-CCCHHHHHHHH----C
Q ss_conf             9999999998453999219999909999898899-------9999999997635981999936-75224647853----0
Q 005581          164 LPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKV-------EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLAC----A  231 (690)
Q Consensus       164 l~~i~~~L~~Aa~D~~IkaIvL~ids~GG~~~~~-------~eI~~aI~~~r~sgKpVvAyv~-~aas~gY~lAs----a  231 (690)
                      .....+.++.+... ++- |+.-.|+||..+..-       ..+.+.+..+.++..|.+.++- .+.+++|+..+    .
T Consensus        86 a~Ka~~fi~lc~~~-~iP-li~l~d~pGf~~G~~~E~~g~~~~ga~~~~a~a~~~vPkitvi~~~~~Gga~~~m~~~~~~  163 (263)
T d1xnya2          86 SEKAARFVRTCDAF-NVP-VLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVITRKAFGGAYDVMGSKHLG  163 (263)
T ss_dssp             HHHHHHHHHHHHHT-TCC-EEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGT
T ss_pred             HHHHHHHHHHHHHH-CCC-EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEECCCCCCCC
T ss_conf             99999999999971-985-6986202445435468987489999999999871689768998657645310024776668


Q ss_pred             CCEEEECCCCEEEEECCCEECCC-HHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             59068658874777023001000-12265323940078961256655776447899999999999999999999999999
Q 005581          232 CEELYAPPSAYFSLYGLTVQASF-LGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVS  310 (690)
Q Consensus       232 aD~I~a~P~s~igs~Gv~~~~~~-~~~lL~KlGI~~~~~~~G~yKsa~~p~~~~~~s~e~re~l~~~l~~~~~~f~~~Va  310 (690)
                      +|.++|-|++.++..|.-.-..- ++.-+++               +.+                               
T Consensus       164 ~d~~~awP~a~~gvm~pe~aa~il~~~~~~~---------------a~~-------------------------------  197 (263)
T d1xnya2         164 ADLNLAWPTAQIAVMGAQGAVNILHRRTIAD---------------AGD-------------------------------  197 (263)
T ss_dssp             CSEEEECTTCEEESSCHHHHHHHHTHHHHHS---------------CCT-------------------------------
T ss_pred             CCEEEECCHHHHHCCCHHHHHHHHHHHHHHH---------------HCC-------------------------------
T ss_conf             8478971303432468889999998887765---------------124-------------------------------


Q ss_pred             HHCCCCHHHHHHHHHCCCCCHHHHHHCCCEEEECCHHHHHHHHHHHHC
Q ss_conf             742999999999880376548878736881575251689999999818
Q 005581          311 STKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLG  358 (690)
Q Consensus       311 ~~Rg~~~~~v~~~~~~~~~~a~eAl~~GLID~i~~~de~~~~l~~~~g  358 (690)
                       .......++.+.......++-.+...|+||+|....|..+.|.+.+.
T Consensus       198 -~~~~~~~~~~~~~~~~~~~p~~aA~~g~iD~VIdP~dTR~~L~~~L~  244 (263)
T d1xnya2         198 -DAEATRARLIQEYEDALLNPYTAAERGYVDAVIMPSDTRRHIVRGLR  244 (263)
T ss_dssp             -TCSSSHHHHHHHHHHHHSSSHHHHHHTSSSEECCGGGHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             -51889999999999985599999874667863689999999999999

>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.12  E-value=0.027  Score=29.68  Aligned_cols=85  Identities=16%  Similarity=0.088  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHH-------HHHHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHH---
Q ss_conf             17999999999988079956899981699951443-------16889999986-19997999988601179999997---
Q 005581          413 IIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLL-SESKPVIASMSDVAASGGYYMAM---  481 (690)
Q Consensus       413 ~~~~~l~~~l~~a~~d~~VkaVVLrinSpGG~~~a-------s~~i~~~i~~~-~~~KPVIA~i~g~AaSGGy~iA~---  481 (690)
                      ...+...+.++-+... ++- ||.-+|+||-.+..       ...+.+.+..+ ....|.|+.+-+-+.||||+..+   
T Consensus        86 ~~a~Kaa~fi~lc~~~-~iP-li~l~DtpGf~~G~~~E~~g~~~~ga~~~~a~a~~~vP~i~viir~~yG~g~~am~~~~  163 (264)
T d1vrga2          86 DSSDKAARFIRFLDAF-NIP-ILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITVILRKAYGGAYIAMGSKH  163 (264)
T ss_dssp             HHHHHHHHHHHHHHHT-TCC-EEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGG
T ss_pred             HHHHHHHHHHHHHHHH-CCC-EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHCCCCC
T ss_conf             6699999999999981-972-68876203331158999975999999999998627999799971786437766306775


Q ss_pred             -HCCEEEEECCCEECCCCC
Q ss_conf             -639578706750001244
Q 005581          482 -AAGTILAENLTLTGSIGV  499 (690)
Q Consensus       482 -aaD~IvA~p~t~~GSIGV  499 (690)
                       .+|.++|-|++.+|.+|.
T Consensus       164 ~~~d~~~awP~a~~~vm~p  182 (264)
T d1vrga2         164 LGADMVLAWPSAEIAVMGP  182 (264)
T ss_dssp             GTCSEEEECTTCEEESSCH
T ss_pred             CCCCEEEECCCEEEEECCH
T ss_conf             6888356514324773177

>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.61  E-value=0.047  Score=28.14  Aligned_cols=85  Identities=15%  Similarity=0.089  Sum_probs=56.3

Q ss_pred             CHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHH-------HHHHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHH-
Q ss_conf             017999999999988079956899981699951443-------16889999986-199979999886011799999976-
Q 005581          412 GIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLL-SESKPVIASMSDVAASGGYYMAMA-  482 (690)
Q Consensus       412 ~~~~~~l~~~l~~a~~d~~VkaVVLrinSpGG~~~a-------s~~i~~~i~~~-~~~KPVIA~i~g~AaSGGy~iA~a-  482 (690)
                      ....+...+.++-+... ++- ||.-+|+||=.+..       .....+.+..+ ....|.|+.+-+-+.||||+..+. 
T Consensus        88 ~~~~~Ka~rfi~lc~~~-~iP-lv~l~dtpGf~~G~~~E~~g~~~~ga~~~~a~a~~~vP~isvi~~~~~G~~~~am~~~  165 (271)
T d2a7sa2          88 INASEKAARFVRTCDCF-NIP-IVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKITVITRKAYGGAYCVMGSK  165 (271)
T ss_dssp             HHHHHHHHHHHHHHHHT-TCC-EEEEEEECCBCCCHHHHHHCHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCG
T ss_pred             HHHHHHHHHHHHHHHHH-CCC-EEEEECHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCC
T ss_conf             78899999999999981-874-5774002656642308876289999999999982788738999678652255531466


Q ss_pred             ---CCEEEEECCCEECCCC
Q ss_conf             ---3957870675000124
Q 005581          483 ---AGTILAENLTLTGSIG  498 (690)
Q Consensus       483 ---aD~IvA~p~t~~GSIG  498 (690)
                         +|.++|-|++.+|.+|
T Consensus       166 ~~~~d~~~AwP~A~igvMg  184 (271)
T d2a7sa2         166 DMGCDVNLAWPTAQIAVMG  184 (271)
T ss_dssp             GGTCSEEEECTTCEEESSC
T ss_pred             CCCCCEEEEECCEEEEECC
T ss_conf             5554268872230675158

>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.45  E-value=0.059  Score=27.50  Aligned_cols=150  Identities=13%  Similarity=0.140  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHH-------HHHHHHHHHHHHCCCEEEEEEC-CCCHHHHHHHH----C
Q ss_conf             9999999998453999219999909999898899-------9999999997635981999936-75224647853----0
Q 005581          164 LPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKV-------EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLAC----A  231 (690)
Q Consensus       164 l~~i~~~L~~Aa~D~~IkaIvL~ids~GG~~~~~-------~eI~~aI~~~r~sgKpVvAyv~-~aas~gY~lAs----a  231 (690)
                      ..-..+.++.+.. -++- |+.-.|+||..+..-       ....+.+..+.++..|.+..+- .+.+++|+..+    .
T Consensus        91 ~~Ka~rfi~lc~~-~~iP-lv~l~dtpGf~~G~~~E~~g~~~~ga~~~~a~a~~~vP~isvi~~~~~G~~~~am~~~~~~  168 (271)
T d2a7sa2          91 SEKAARFVRTCDC-FNIP-IVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKITVITRKAYGGAYCVMGSKDMG  168 (271)
T ss_dssp             HHHHHHHHHHHHH-TTCC-EEEEEEECCBCCCHHHHHHCHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGT
T ss_pred             HHHHHHHHHHHHH-HCCC-EEEEECHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCCCCC
T ss_conf             9999999999998-1874-5774002656642308876289999999999982788738999678652255531466555


Q ss_pred             CCEEEECCCCEEEEECCCEECCC-HHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             59068658874777023001000-12265323940078961256655776447899999999999999999999999999
Q 005581          232 CEELYAPPSAYFSLYGLTVQASF-LGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVS  310 (690)
Q Consensus       232 aD~I~a~P~s~igs~Gv~~~~~~-~~~lL~KlGI~~~~~~~G~yKsa~~p~~~~~~s~e~re~l~~~l~~~~~~f~~~Va  310 (690)
                      +|.+|+-|++.++..|...-..- ++.-+++            -+..++.     ..+                      
T Consensus       169 ~d~~~AwP~A~igvMgpegaa~v~~~~~l~~------------~~~~~~~-----~~~----------------------  209 (271)
T d2a7sa2         169 CDVNLAWPTAQIAVMGASGAVGFVYRQQLAE------------AAANGED-----IDK----------------------  209 (271)
T ss_dssp             CSEEEECTTCEEESSCHHHHHHHHTTTTTTG------------GGTSSCC-----TTS----------------------
T ss_pred             CCEEEEECCEEEEECCHHHHHHHHHHHHHHH------------HHHCCCC-----HHH----------------------
T ss_conf             4268872230675158999999998876666------------5434654-----189----------------------


Q ss_pred             HHCCCCHHHHHHHHHCCCCCHHHHHHCCCEEEECCHHHHHHHHHHHHCC
Q ss_conf             7429999999998803765488787368815752516899999998189
Q 005581          311 STKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGV  359 (690)
Q Consensus       311 ~~Rg~~~~~v~~~~~~~~~~a~eAl~~GLID~i~~~de~~~~l~~~~g~  359 (690)
                          ...+...+. ....-++-.|.+.|+||+|....|..+.|.+.+..
T Consensus       210 ----~~~~~~~e~-~e~~~~p~~aa~~g~iD~VIdP~dTR~~L~~~L~~  253 (271)
T d2a7sa2         210 ----LRLRLQQEY-EDTLVNPYVAAERGYVDAVIPPSHTRGYIGTALRL  253 (271)
T ss_dssp             ----STTHHHHHH-HTTTSBSHHHHHHTSSSEECCGGGHHHHHHHHHHH
T ss_pred             ----HHHHHHHHH-HHHHCCHHHHHHCCCCCEEECHHHHHHHHHHHHHH
T ss_conf             ----999999999-99854999998738788117889999999999999

>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.27  E-value=0.068  Score=27.12  Aligned_cols=145  Identities=13%  Similarity=0.088  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHH-------HHHHHHHHHHHHCCCEEEEEEC-CCCHHHHHHHH----C
Q ss_conf             9999999998453999219999909999898899-------9999999997635981999936-75224647853----0
Q 005581          164 LPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKV-------EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLAC----A  231 (690)
Q Consensus       164 l~~i~~~L~~Aa~D~~IkaIvL~ids~GG~~~~~-------~eI~~aI~~~r~sgKpVvAyv~-~aas~gY~lAs----a  231 (690)
                      ..-..+.++.+.. -+|- |+.-+|+||..+..-       ..+.+.+..+.++..|.+..+- .+.++||+..+    .
T Consensus        88 a~Kaa~fi~lc~~-~~iP-li~l~DtpGf~~G~~~E~~g~~~~ga~~~~a~a~~~vP~i~viir~~yG~g~~am~~~~~~  165 (264)
T d1vrga2          88 SDKAARFIRFLDA-FNIP-ILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITVILRKAYGGAYIAMGSKHLG  165 (264)
T ss_dssp             HHHHHHHHHHHHH-TTCC-EEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGT
T ss_pred             HHHHHHHHHHHHH-HCCC-EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHCCCCCCC
T ss_conf             9999999999998-1972-6887620333115899997599999999999862799979997178643776630677568


Q ss_pred             CCEEEECCCCEEEEECCCEECCC-HHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             59068658874777023001000-12265323940078961256655776447899999999999999999999999999
Q 005581          232 CEELYAPPSAYFSLYGLTVQASF-LGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVS  310 (690)
Q Consensus       232 aD~I~a~P~s~igs~Gv~~~~~~-~~~lL~KlGI~~~~~~~G~yKsa~~p~~~~~~s~e~re~l~~~l~~~~~~f~~~Va  310 (690)
                      +|.+|+-|++.++..|...-.-- ++.-++.                       .-.++  +..+..++.          
T Consensus       166 ~d~~~awP~a~~~vm~pe~aa~v~~~~~l~~-----------------------~~~~~--~~~~~~~~~----------  210 (264)
T d1vrga2         166 ADMVLAWPSAEIAVMGPEGAANIIFKREIEA-----------------------SSNPE--ETRRKLIEE----------  210 (264)
T ss_dssp             CSEEEECTTCEEESSCHHHHHHHHTHHHHHH-----------------------SSCHH--HHHHHHHHH----------
T ss_pred             CCEEEECCCEEEEECCHHHHHHHHHHHHHHH-----------------------HHCCH--HHHHHHHHH----------
T ss_conf             8835651432477317787656435544443-----------------------11817--789999999----------


Q ss_pred             HHCCCCHHHHHHHHHCCCCCHHHHHHCCCEEEECCHHHHHHHHHHHHC
Q ss_conf             742999999999880376548878736881575251689999999818
Q 005581          311 STKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLG  358 (690)
Q Consensus       311 ~~Rg~~~~~v~~~~~~~~~~a~eAl~~GLID~i~~~de~~~~l~~~~g  358 (690)
                                  . ....-++-.+.+.|++|+|....|...++.+.+.
T Consensus       211 ------------~-~e~~~~~~~aa~~g~iD~VIdP~dTR~~L~~~Le  245 (264)
T d1vrga2         211 ------------Y-KQQFANPYIAASRGYVDMVIDPRETRKYIMRALE  245 (264)
T ss_dssp             ------------H-HHHTSSHHHHHHTTSSSEECCGGGHHHHHHHHHH
T ss_pred             ------------H-HHHHCCHHHHHHCCCCCEEECHHHHHHHHHHHHH
T ss_conf             ------------9-9985699999873877832788999999999999

>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=94.86  E-value=0.089  Score=26.39  Aligned_cols=87  Identities=9%  Similarity=-0.051  Sum_probs=60.3

Q ss_pred             CCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHH----------HHHHHHHHHHCCCEEEEEEC-CCCHHHHHH
Q ss_conf             8999999999999845399921999990999989889999----------99999997635981999936-752246478
Q 005581          160 SGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEE----------IRRHVVDFKKSGKFIIGYVP-VCGEKEYYL  228 (690)
Q Consensus       160 ~~~sl~~i~~~L~~Aa~D~~IkaIvL~ids~GG~~~~~~e----------I~~aI~~~r~sgKpVvAyv~-~aas~gY~l  228 (690)
                      +..+...+.+.++.|.+. ++- +|.-+||+|+.+....+          +...+.++...+.|+|+.+- .|.+++-|.
T Consensus       121 ~~~~~~K~~r~~~lA~~~-~lP-~I~l~ds~Ga~~~~~~e~~~~~~~~g~~~~~~a~ls~~~VP~Isvv~G~~~gGgAy~  198 (287)
T d1pixa2         121 VPGQAECLLRASDTAKTL-HVP-LVYVLNCSGVKFDEQEKVYPNRRGGGTPFFRNAELNQLGIPVIVGIYGTNPAGGGYH  198 (287)
T ss_dssp             CTTHHHHHHHHHHHHHHH-TCC-EEEEECCCEECGGGHHHHSSSTTSTTHHHHHHHHHHHTTCCEEEEECSEEETHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHC-CCC-EEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEC
T ss_conf             255889999888766534-797-899964776667751032131246789999999986269876898337765320010


Q ss_pred             HHCCCEEEECCCCEEEEECC
Q ss_conf             53059068658874777023
Q 005581          229 ACACEELYAPPSAYFSLYGL  248 (690)
Q Consensus       229 AsaaD~I~a~P~s~igs~Gv  248 (690)
                      ++.||.|++.+.+.+++.|.
T Consensus       199 ~~~~~~i~~~~~a~i~~~Gp  218 (287)
T d1pixa2         199 SISPTVIIAHEKANMAVGGA  218 (287)
T ss_dssp             HHSSSEEEEETTCEEESCCC
T ss_pred             CCCCEEEEECCCEEEEEECH
T ss_conf             22423687438759999777

>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.46  E-value=0.11  Score=25.78  Aligned_cols=49  Identities=10%  Similarity=-0.054  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCEEEEECCCEEC
Q ss_conf             3168899999861999799998860117999999763957870675000
Q 005581          447 ASDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG  495 (690)
Q Consensus       447 as~~i~~~i~~~~~~KPVIA~i~g~AaSGGy~iA~aaD~IvA~p~t~~G  495 (690)
                      ++-.|+.+..+.....|+|+.+.|.|+++|-|++..||++++.+.+.+.
T Consensus       226 g~g~ia~~~s~a~~~iptis~v~G~~vG~gAyl~~L~d~vIm~~~s~i~  274 (333)
T d1uyra1         226 GSGLIAGATSRAYHDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPII  274 (333)
T ss_dssp             HHHHHHHHHHHHHHHSCEEEEESSCEETHHHHHHHHTCCEEEETTCCEE
T ss_pred             HHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEECCCCCEEEEECCCEEE
T ss_conf             7799999999864799879999577544410000115279996795588

>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=93.45  E-value=0.17  Score=24.57  Aligned_cols=84  Identities=10%  Similarity=0.052  Sum_probs=57.0

Q ss_pred             CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHH----H---HHHHHHHHHHHHHCCCEEEEEEC-CCCHHHHHHHHCCC
Q ss_conf             9999999999984539992199999099998988----9---99999999997635981999936-75224647853059
Q 005581          162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWG----K---VEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACE  233 (690)
Q Consensus       162 ~sl~~i~~~L~~Aa~D~~IkaIvL~ids~GG~~~----~---~~eI~~aI~~~r~sgKpVvAyv~-~aas~gY~lAsaaD  233 (690)
                      .....+..+++.|.+.. +- +|.-++|.|+.+.    .   .-.+...+.+++ ...|+|+.+. .|..++.+.++.||
T Consensus       108 ~~~~K~~~a~e~A~~~~-lP-lV~l~~sgG~r~~eg~~~l~~~~~~~~~~~~ls-~~vP~i~vv~Gp~~GG~a~~~~~~d  184 (253)
T d1on3a1         108 TQSTKVVETMEQALLTG-TP-FLFFYDSGGARIQEGIDSLSGYGKMFFANVKLS-GVVPQIAIIAGPCAGGASYSPALTD  184 (253)
T ss_dssp             HHHHHHHHHHHHHHHHT-CC-EEEEEEECSBCGGGTHHHHHHHHHHHHHHHHHT-TTSCEEEEEEEEEESGGGHHHHHSS
T ss_pred             CCCCHHHHHHHHHHHCC-CC-EEEEEECCCCCCCCCCEECCCCCEEHHHHHHHH-CCCEEEEEEECCCCCCEEECCCHHH
T ss_conf             12411235677775138-97-289872588755665201135641048888773-1040899981675511230111111


Q ss_pred             EEEECCCCEEEEECC
Q ss_conf             068658874777023
Q 005581          234 ELYAPPSAYFSLYGL  248 (690)
Q Consensus       234 ~I~a~P~s~igs~Gv  248 (690)
                      .++|.+.+.++..|+
T Consensus       185 ~vi~~~~a~i~~aGP  199 (253)
T d1on3a1         185 FIIMTKKAHMFITGP  199 (253)
T ss_dssp             EEEEETTCEEESSCH
T ss_pred             HEECCCCCEEEECCC
T ss_conf             100134416985086

>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=92.96  E-value=0.2  Score=24.10  Aligned_cols=84  Identities=14%  Similarity=0.075  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHH-------HHHHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHH--
Q ss_conf             17999999999988079956899981699951443-------16889999986-199979999886011799999976--
Q 005581          413 IIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLL-SESKPVIASMSDVAASGGYYMAMA--  482 (690)
Q Consensus       413 ~~~~~l~~~l~~a~~d~~VkaVVLrinSpGG~~~a-------s~~i~~~i~~~-~~~KPVIA~i~g~AaSGGy~iA~a--  482 (690)
                      ...+...+.++-+..- ++ -||.-+|+||=.+..       .....+.+..+ ....|.|+.+-+-+.|+|||..++  
T Consensus        86 ~~a~Kaarfi~lc~~~-~i-Plv~l~D~pGf~~G~~~E~~g~i~~ga~~~~a~a~~~vP~itvi~rkayG~g~~am~g~~  163 (264)
T d1on3a2          86 NASDKAAEFVNFCDSF-NI-PLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRD  163 (264)
T ss_dssp             HHHHHHHHHHHHHHHT-TC-CEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGG
T ss_pred             HHHHHHHHHHHHHHHC-CC-CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCC
T ss_conf             7799999999999860-98-259985045554558999988999999999999738998799986565476421124235


Q ss_pred             --CCEEEEECCCEECCCC
Q ss_conf             --3957870675000124
Q 005581          483 --AGTILAENLTLTGSIG  498 (690)
Q Consensus       483 --aD~IvA~p~t~~GSIG  498 (690)
                        +|.++|-|++.+|.+|
T Consensus       164 ~~~d~~~aWP~A~~~vMg  181 (264)
T d1on3a2         164 LGADAVYAWPSAEIAVMG  181 (264)
T ss_dssp             GTCSEEEECTTCEEESSC
T ss_pred             CCHHHEEEHHHHHHHHCC
T ss_conf             770641607766766136

>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.13  E-value=0.26  Score=23.43  Aligned_cols=84  Identities=12%  Similarity=0.131  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHH-------HHHHHHHHHHH-CCCCCEEEEE--CCCCCHHHHHHHHHC
Q ss_conf             7999999999988079956899981699951443-------16889999986-1999799998--860117999999763
Q 005581          414 IGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLL-SESKPVIASM--SDVAASGGYYMAMAA  483 (690)
Q Consensus       414 ~~~~l~~~l~~a~~d~~VkaVVLrinSpGG~~~a-------s~~i~~~i~~~-~~~KPVIA~i--~g~AaSGGy~iA~aa  483 (690)
                      .+....+.|..+.+..++ -||.-+|.||=++..       .....+.+..+ ....|++++|  .+-+- ||.|+++.+
T Consensus       114 sA~K~A~~i~d~cd~~~l-PLi~l~D~pGF~~G~~~E~~gilr~GA~iv~A~~~~~vP~i~vI~~~g~~~-GGa~vv~~~  191 (404)
T d1uyra2         114 SAFKTAQAINDFNNGEQL-PMMILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIYIPPTGELR-GGSWVVVDP  191 (404)
T ss_dssp             HHHHHHHHHHHHHTTSCC-CEEECCCCCCBCC------CTHHHHHHHHHHHHHTCCSCEEEEECTTCEEE-HHHHHTTCG
T ss_pred             HHHHHHHHHHHHHHCCCC-CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC-HHHHHCCCC
T ss_conf             799999999986523466-458861377666768999878999999999999854899799995786413-023410367


Q ss_pred             ----C--EEEEECCCEECCCCC
Q ss_conf             ----9--578706750001244
Q 005581          484 ----G--TILAENLTLTGSIGV  499 (690)
Q Consensus       484 ----D--~IvA~p~t~~GSIGV  499 (690)
                          +  ..||-|++..|.+|.
T Consensus       192 ~~~~~~~~~yAwP~a~~gVm~p  213 (404)
T d1uyra2         192 TINADQMEMYADVNARAGVLEP  213 (404)
T ss_dssp             GGGTTTEEEEEETTCEEESSCH
T ss_pred             CCCCCCCEEEECCCCCCCCCCH
T ss_conf             6677655488878654106786

>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=91.76  E-value=0.29  Score=23.16  Aligned_cols=144  Identities=17%  Similarity=0.149  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHH-------HHHHHHHHHHCCCEEEEEEC-CCCHHHHHHHH----CC
Q ss_conf             99999999845399921999990999989889999-------99999997635981999936-75224647853----05
Q 005581          165 PQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEE-------IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLAC----AC  232 (690)
Q Consensus       165 ~~i~~~L~~Aa~D~~IkaIvL~ids~GG~~~~~~e-------I~~aI~~~r~sgKpVvAyv~-~aas~gY~lAs----aa  232 (690)
                      .-..+.++-+.. -++- |+.-.|+||-.+..-.|       ..+.+..+.++..|.++.+- .+.++||+..+    .+
T Consensus        89 ~Kaarfi~lc~~-~~iP-lv~l~D~pGf~~G~~~E~~g~i~~ga~~~~a~a~~~vP~itvi~rkayG~g~~am~g~~~~~  166 (264)
T d1on3a2          89 DKAAEFVNFCDS-FNIP-LVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGA  166 (264)
T ss_dssp             HHHHHHHHHHHH-TTCC-EEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTC
T ss_pred             HHHHHHHHHHHH-CCCC-EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCH
T ss_conf             999999999986-0982-59985045554558999988999999999999738998799986565476421124235770


Q ss_pred             CEEEECCCCEEEEECCCEECCC-HHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9068658874777023001000-122653239400789612566557764478999999999999999999999999997
Q 005581          233 EELYAPPSAYFSLYGLTVQASF-LGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSS  311 (690)
Q Consensus       233 D~I~a~P~s~igs~Gv~~~~~~-~~~lL~KlGI~~~~~~~G~yKsa~~p~~~~~~s~e~re~l~~~l~~~~~~f~~~Va~  311 (690)
                      |.+|+=|++.++..|.-.-..- ++.-++               ..         .+. .+...                
T Consensus       167 d~~~aWP~A~~~vMg~Egaa~v~~~~el~---------------a~---------~~~-~~~~~----------------  205 (264)
T d1on3a2         167 DAVYAWPSAEIAVMGAEGAANVIFRKEIK---------------AA---------DDP-DAMRA----------------  205 (264)
T ss_dssp             SEEEECTTCEEESSCHHHHHHHHTHHHHH---------------HS---------SCH-HHHHH----------------
T ss_pred             HHEEEHHHHHHHHCCHHHHHHHHHHHHHH---------------HH---------HHH-HHHHH----------------
T ss_conf             64160776676613688787898764555---------------54---------444-55449----------------


Q ss_pred             HCCCCHHHHHHHHHCCCCCHHHHHHCCCEEEECCHHHHHHHHHHHHC
Q ss_conf             42999999999880376548878736881575251689999999818
Q 005581          312 TKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLG  358 (690)
Q Consensus       312 ~Rg~~~~~v~~~~~~~~~~a~eAl~~GLID~i~~~de~~~~l~~~~g  358 (690)
                            +.+++..+ ..-++-.|-+.|+||+|....|..+++.+.+.
T Consensus       206 ------~~~~e~~~-~~~~p~~aA~~g~iD~VIdP~eTR~~L~~aLe  245 (264)
T d1on3a2         206 ------EKIEEYQN-AFNTPYVAAARGQVDDVIDPADTRRKIASALE  245 (264)
T ss_dssp             ------HHHHHHHH-HHSSHHHHHHTTSSSEECCGGGHHHHHHHHHH
T ss_pred             ------HHHHHHHH-HHCCHHHHHHCCCCCEEECHHHHHHHHHHHHH
T ss_conf             ------99999999-86599999974788802887999999999999

>d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.65  E-value=0.17  Score=24.66  Aligned_cols=84  Identities=17%  Similarity=0.227  Sum_probs=47.0

Q ss_pred             CCCEEEEEEECCCCCCCC------CCCC-----CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             985799995211036888------7878-----88301799999999998807995689998169995144316889999
Q 005581          387 GDQIAVIRASGSISRVRS------PLSL-----SSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREI  455 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~------~~~~-----~~~~~~~~~l~~~l~~a~~d~~VkaVVLrinSpGG~~~as~~i~~~i  455 (690)
                      +++|++|.=+|.+...-.      ..+.     .++.... .+.+.|+...+|+++|+|+|.+++.+ +.   +...+..
T Consensus        20 ~G~valiSqSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~-~~~d~l~~l~~D~~t~~i~l~~E~~~-~~---~~f~~~~   94 (161)
T d2csua2          20 KGNVAFISQSGALGAGIVYKTIKEDIGFSKFISVGNMADV-DFAELMEYLADTEEDKAIALYIEGVR-NG---KKFMEVA   94 (161)
T ss_dssp             ECSEEEEESCHHHHHHHHHHHHHTTCEESEEEECTTCCSS-CHHHHHHHHTTCSSCCEEEEEESCCS-CH---HHHHHHH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC-CHHHHHHHHHCCCCCCEEEEEECCCC-CH---HHHHHHH
T ss_conf             9999999787899999999998579972599945985016-89999999734799857899722785-99---9999999


Q ss_pred             HHHCCCCCEEEEECCCCCHH
Q ss_conf             98619997999988601179
Q 005581          456 RLLSESKPVIASMSDVAASG  475 (690)
Q Consensus       456 ~~~~~~KPVIA~i~g~AaSG  475 (690)
                      ++....||||+...|-...|
T Consensus        95 r~~~~~Kpvv~~k~G~s~~g  114 (161)
T d2csua2          95 KRVTKKKPIIALKAGKSESG  114 (161)
T ss_dssp             HHHHHHSCEEEEECC-----
T ss_pred             HHHHCCCCEEEEEEECCCCC
T ss_conf             88752587058874034100

>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=90.05  E-value=0.41  Score=22.15  Aligned_cols=85  Identities=12%  Similarity=0.052  Sum_probs=53.9

Q ss_pred             CHHHHHHHHHHHHHHHCCCCEEEEEECCCCC---CCHHH----HHHHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHC
Q ss_conf             0179999999999880799568999816999---51443----16889999986-1999799998860117999999763
Q 005581          412 GIIGEQLIEKIRKVRESKRYKAAIIRIDSPG---GDALA----SDLMWREIRLL-SESKPVIASMSDVAASGGYYMAMAA  483 (690)
Q Consensus       412 ~~~~~~l~~~l~~a~~d~~VkaVVLrinSpG---G~~~a----s~~i~~~i~~~-~~~KPVIA~i~g~AaSGGy~iA~aa  483 (690)
                      ....+...+.++-+... ++- ||.-+|+||   |....    .....+.+..+ ....|.|+.+-+-+.|||++..|..
T Consensus       101 ~~~a~K~~rfi~lc~~~-~iP-lv~l~D~pGf~~g~~~E~~g~~r~ga~~~~a~~~~~VP~isvi~r~~~G~a~~am~g~  178 (299)
T d1pixa3         101 RQGLVKMNEFVTLCARD-RLP-IVWIQDTTGIDVGNDAEKAELLGLGQSLIYSIQTSHIPQFEITLRKGTAAAHYVLGGP  178 (299)
T ss_dssp             HHHHHHHHHHHHHHHHT-TCC-EEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHTCCCCEEEEECSEEETTHHHHTTCT
T ss_pred             HHHHHHHHHHHHHHHHC-CCE-EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCC
T ss_conf             89999999999999873-980-7999868875530577740678999999987875032047999645435431233467


Q ss_pred             ----CE--EEEECCCEECCCC
Q ss_conf             ----95--7870675000124
Q 005581          484 ----GT--ILAENLTLTGSIG  498 (690)
Q Consensus       484 ----D~--IvA~p~t~~GSIG  498 (690)
                          |.  .++.|++.+|.+|
T Consensus       179 ~~~~~~~~~~awP~aeigvMg  199 (299)
T d1pixa3         179 QGNDTNAFSIGTAATEIAVMN  199 (299)
T ss_dssp             TCTTTEEEEEECTTCEEESSC
T ss_pred             CCCCCCCEECCCCCCCCCCCC
T ss_conf             667643210478755013435

>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=88.81  E-value=0.51  Score=21.57  Aligned_cols=150  Identities=11%  Similarity=0.102  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHH-------HHHHHHHHHHHHCCCEEEEEEC-CCCHHHHHHHHC----
Q ss_conf             9999999998453999219999909999898899-------9999999997635981999936-752246478530----
Q 005581          164 LPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKV-------EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACA----  231 (690)
Q Consensus       164 l~~i~~~L~~Aa~D~~IkaIvL~ids~GG~~~~~-------~eI~~aI~~~r~sgKpVvAyv~-~aas~gY~lAsa----  231 (690)
                      ..-..+.++.+... ++- |+.-+|+||..+..-       ....+.+..+-++..|.++.+- .+.++||+..|.    
T Consensus       104 a~K~~rfi~lc~~~-~iP-lv~l~D~pGf~~g~~~E~~g~~r~ga~~~~a~~~~~VP~isvi~r~~~G~a~~am~g~~~~  181 (299)
T d1pixa3         104 LVKMNEFVTLCARD-RLP-IVWIQDTTGIDVGNDAEKAELLGLGQSLIYSIQTSHIPQFEITLRKGTAAAHYVLGGPQGN  181 (299)
T ss_dssp             HHHHHHHHHHHHHT-TCC-EEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHTCCCCEEEEECSEEETTHHHHTTCTTCT
T ss_pred             HHHHHHHHHHHHHC-CCE-EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf             99999999999873-980-7999868875530577740678999999987875032047999645435431233467667


Q ss_pred             CCEE--EECCCCEEEEECCCE--ECCCHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5906--865887477702300--100012265323940078961256655776447899999999999999999999999
Q 005581          232 CEEL--YAPPSAYFSLYGLTV--QASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLD  307 (690)
Q Consensus       232 aD~I--~a~P~s~igs~Gv~~--~~~~~~~lL~KlGI~~~~~~~G~yKsa~~p~~~~~~s~e~re~l~~~l~~~~~~f~~  307 (690)
                      .|.+  |+.|++.++..|.-.  ...|-+++ ++            -+.++.     .. ++..+.++.++...+     
T Consensus       182 ~~~~~~~awP~aeigvMg~E~aa~vl~~~el-~~------------~~~~~~-----~~-~e~~e~~~~~~~~~~-----  237 (299)
T d1pixa3         182 DTNAFSIGTAATEIAVMNGETAATAMYSRRL-AK------------DRKAGK-----DL-QPTIDKMNNLIQAFY-----  237 (299)
T ss_dssp             TTEEEEEECTTCEEESSCHHHHHHHHHHHHH-HH------------HHHTTC-----CC-HHHHHHHHHHHHHHH-----
T ss_pred             CCCCEECCCCCCCCCCCCCHHHHEEEHHHHH-HH------------HHHHHH-----HH-HHHHHHHHHHHHHHH-----
T ss_conf             6432104787550134353223000011335-44------------311233-----24-578899999999999-----


Q ss_pred             HHHHHCCCCHHHHHHHHHCCCCCHHHHHHCCCEEEECCHHHHHHHHHHHHC
Q ss_conf             999742999999999880376548878736881575251689999999818
Q 005581          308 KVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLG  358 (690)
Q Consensus       308 ~Va~~Rg~~~~~v~~~~~~~~~~a~eAl~~GLID~i~~~de~~~~l~~~~g  358 (690)
                                         .--++-.|.+.|+||+|....|...++...+.
T Consensus       238 -------------------~~~sp~~aAs~~~iD~IIDP~dTR~~L~~~Le  269 (299)
T d1pixa3         238 -------------------TKSRPKVCAELGLVDEIVDMNKIRGYVEAFTE  269 (299)
T ss_dssp             -------------------HTTSHHHHHHHTSSSEECCTTTHHHHHHHHHH
T ss_pred             -------------------HHCCHHHHHHHCCCCEEECHHHHHHHHHHHHH
T ss_conf             -------------------84399999981775803887999999999999

>d1th8b_ c.13.2.1 (B:) Anti-sigma factor antagonist SpoIIaa {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: SpoIIaa-like
family: Anti-sigma factor antagonist SpoIIaa
domain: Anti-sigma factor antagonist SpoIIaa
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.51  E-value=0.78  Score=20.39  Aligned_cols=67  Identities=18%  Similarity=0.229  Sum_probs=28.3

Q ss_pred             CEEEEEEECEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC-CCCHHHHHHHHHHHHHHHHCCCEE
Q ss_conf             9099999710314554334588999999999999845399921999990999-989889999999999976359819
Q 005581          139 GSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-SCGWGKVEEIRRHVVDFKKSGKFI  214 (690)
Q Consensus       139 ~~VlvI~l~G~I~~~~~~~~~~~~sl~~i~~~L~~Aa~D~~IkaIvL~ids~-GG~~~~~~eI~~aI~~~r~sgKpV  214 (690)
                      +.|+++++.|++...         +...+.+.+.++..++..+.|+|++... .-+.....-+.+..+.+++.|+.+
T Consensus        10 ~~v~vv~l~G~L~~~---------~~~~~~~~l~~~~~~~~~~~iilDls~v~~iDssg~~~L~~~~~~~~~~g~~l   77 (115)
T d1th8b_          10 QDVLIVRLSGELDHH---------TAEELREQVTDVLENRAIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQM   77 (115)
T ss_dssp             TTEEEEEEEEEESHH---------HHHHHHHHHHHHHHSSCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCE
T ss_pred             CCEEEEEEEEEEEHH---------HHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEE
T ss_conf             999999998999979---------99999999999985189979999987898788799999999999999689989

>d1oi7a2 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, alpha-chain, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=83.38  E-value=0.96  Score=19.80  Aligned_cols=87  Identities=16%  Similarity=0.203  Sum_probs=49.6

Q ss_pred             CCCEEEEEEECCCCCCCC------CCCC-----CCCC-HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             985799995211036888------7878-----8830-179999999999880799568999816999514431688999
Q 005581          387 GDQIAVIRASGSISRVRS------PLSL-----SSSG-IIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWRE  454 (690)
Q Consensus       387 ~~~IAvI~i~G~I~~~~~------~~~~-----~~~~-~~~~~l~~~l~~a~~d~~VkaVVLrinSpGG~~~as~~i~~~  454 (690)
                      ++.|++|.=+|.+...-.      ..+.     .+++ .......+.+....+|+++++|++.+++.+ +.   ....+.
T Consensus        23 ~G~va~iSQSG~~~~~~~~~~~~~g~g~s~~~~~G~~~~~~~~~~d~l~~~~~D~~t~vI~l~~E~~~-~~---~~f~~~   98 (167)
T d1oi7a2          23 RGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGEIGG-SD---EEEAAA   98 (167)
T ss_dssp             EEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSCCSSCHHHHHHHHHTCTTCCEEEEEECSSS-SH---HHHHHH
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCEEECCCHHHHHHHHHHHCCCCCEEEEEEECCC-HH---HHHHHH
T ss_conf             98679997010799999999997398740699712202158338899999862344302567640232-07---788999


Q ss_pred             HHHHCCCCCEEEEECCCCCHHHH
Q ss_conf             99861999799998860117999
Q 005581          455 IRLLSESKPVIASMSDVAASGGY  477 (690)
Q Consensus       455 i~~~~~~KPVIA~i~g~AaSGGy  477 (690)
                      .++....||+|+...+-.+.++-
T Consensus        99 ~~~~~~~kpvvv~~~g~~a~~~~  121 (167)
T d1oi7a2          99 WVKDHMKKPVVGFIGGRSAPKGK  121 (167)
T ss_dssp             HHHHHCCSCEEEEESCC------
T ss_pred             HHHHHCCCCEEEEECCCCCCCCC
T ss_conf             99984579669996244342200

>d1vc1a_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: SpoIIaa-like
family: Anti-sigma factor antagonist SpoIIaa
domain: Anti-sigma factor antagonist SpoIIaa
species: Thermotoga maritima [TaxId: 2336]

Probab=81.87  E-value=1.1  Score=19.44  Aligned_cols=70  Identities=14%  Similarity=0.156  Sum_probs=39.5

Q ss_pred             CCCEEEEEEECEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC-CCCHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             689099999710314554334588999999999999845399921999990999-9898899999999999763598199
Q 005581          137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-SCGWGKVEEIRRHVVDFKKSGKFII  215 (690)
Q Consensus       137 ~~~~VlvI~l~G~I~~~~~~~~~~~~sl~~i~~~L~~Aa~D~~IkaIvL~ids~-GG~~~~~~eI~~aI~~~r~sgKpVv  215 (690)
                      .++.++++.+.|++..         .+...+.+.|.++...+..+.|++++... .-+.+...-+....+.+++.|..++
T Consensus        10 ~~~~~~vv~l~G~l~~---------~~~~~~~~~l~~~~~~~~~~~vvid~~~v~~iDssg~~~l~~~~~~~~~~~~~l~   80 (110)
T d1vc1a_          10 EQDDKAIVRVQGDIDA---------YNSSELKEQLRNFISTTSKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFI   80 (110)
T ss_dssp             EETTEEEEEEESCBST---------TTHHHHHHHHHHHHHHCCCSEEEEEEEECCCBCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             EECCEEEEEEEEEEEH---------HHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEE
T ss_conf             9999999999989996---------9999999999988745898799999899976587999999999999996899799