Citrus Sinensis ID: 005587

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------69
Protein Sequence
MGVKRSNIECKNWKIYANFFVGFVLIWAAGFSCAVTNPNDVAAINSLYAALGSPVLPGWVASAGDPCGESWQGVQCNASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLPLRDLNIENNLFSGPIPEKMLQIPNFRKDGNPFNSTVAPSRPPTSSVTPPPAPPFFGPRPVSGSSPVSRTPPSQHTPGKQADGPTALEDSNSGKKKSSTTKKIVWISIAGVLLFVILALVFLLFMPRCIKRRGEVDRIFKRHQVGAFRGNNREEARDNGTLALPTNQMEKDASVKPKEDHRSEMRRMGAIPHAQNEQERNKQRMSTIPRRDDHEIDMSSLDMMMMPPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSHNLTIMRAGGVTHRNF
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccccccccccccccccEEcccccccEEEEccccccEEccccccccccccEEEcccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccccccccccccEEEcccccccEEccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEHHHHHHHHcccccccEEccccccEEEEEEcccccEEEEEEccccccccccHHHHHHHHHHHHcccccccccEEEEEccccEEEEEEEccccccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccEEccccccEEEcccccccccccccccEEEEEEEccccccEEcccc
Secondary Structure Prediction (SSPRO)
cccEEcccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccccccccccccEEEcccEEEEEEEccccccccccHHHccccccEEEEcccccccccccHHHHHcccEEEcccccEEccccHHHHHcccccEEEEEEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEcccccccccccEEEEEccccccccccHHHccccccEcccccccccccccccccHHHHHHHcEEEccccccccccccHccccEEEccccccccccccccccccccccEEEcccccccccccccccHHcccEEEEcccccccccccccccccccEEEEccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHccccccccEEcHHHHHHHHccccHHcEEccccccEEEEEEcccccEEEEEEHHcccccccccHHHHHHHHHHHHcccccHHHEEEEEccccccEEEEEEcccccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccEEEcccccccHccccHHHHcccccccccccEEEEEEccccccccc
Coil and Loop (DISEMBL)
mgvkrsniecknwKIYANFFVGFVLIWAAGFscavtnpndVAAINSLYAalgspvlpgwvasagdpcgeswqgvqcnaSDIIAIILNGAnlggelgenlgafSSIRVIdlsnnhiggsipsilpvtmqnfflsdnqfsgsipsslATLTLLTDMSLnnnllsgeipDAFQSLTGLInldlssnnlsgelppslenlSQLTTLHLQnnqlsgtldvlqdlplrdlniennlfsgpipekmlqipnfrkdgnpfnstvapsrpptssvtpppappffgprpvsgsspvsrtppsqhtpgkqadgptaledsnsgkkkssttKKIVWISIAGVLLFVILALVFLLFMprcikrrgeVDRIFKRHqvgafrgnnreeardngtlalptnqmekdasvkpkedhrsemrrmgaiphaqneqernkqrmstiprrddheidmssldmmmmpppppppppppppppppppppvvekvivkpivpaegtavktstktakpfttaRSFTIASLQQYTNSFSQENLIGAGMLGSvyraqlpdgkllAVKKLDKrassqqkdDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCsngtlqdmlhsddelknnlSWNTRIRMALGAARALEYLHeicqppivhrnfksanilldddlavsvsdcglaplissgsvsqvsHNLTImraggvthrnf
Flexible Loop (DISEMBL)
mgvkrsnieckNWKIYANFFVGFVLIWAAGFSCAVTNPNDVAAINSLYAALGSPVLPGWVASAGDPCGESWQGVQCNASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLPLRDLNIENNLFSGPIPEKMLQIPNFRKDGNPFNSTVAPSRPPTSSVTPPPAPPFFGPRPVSGSSPVSRTPPSqhtpgkqadgptaledsnsgkkkssttkKIVWISIAGVLLFVILALVFLLFMPRCIKRRGEVDRIFKrhqvgafrgnnreeardngtlalptnqmekdasvkpkedhRSEMRRmgaiphaqneqernkqrmstiprrdDHEIDMSSLDMMMMPPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVpaegtavktstktakpfttARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDkrassqqkddeflELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIssgsvsqvshnltimraggvthrnf
Low Complexity Region (SEG)
MGVKRSNIECKNWKIYANFFVGFVLIWAAGFSCAVTNPNDVAAINSLYAALGSPVLPGWVASAGDPCGESWQGVQCNASDIIAIIlnganlggelgenlgaFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLInldlssnnlsGELPPSLEnlsqlttlhlqnnqlsGTLDVLQDLPLRDLNIENNLFSGPIPEKMLQIPNFRKDGNPFNstvapsrpptssvtpppappffgprpvsgsspvsrtppsQHTPGKQADGPTALEDSNSGkkkssttkkIVWISIAGvllfvilalvfllfMPRCIKRRGEVDRIFKRHQVGAFRGNNREEARDNGTLALPTNQMEKDASVKPKEDHRSEMRRMGAIPHAQNEQERNKQRMSTIPRRDDHEIDMSSLDMMMMpppppppppppppppppppppvvekvivkpivpAEGTAVKTSTKTAKPFTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANIlldddlAVSVSDCGLAPLISSGSVSQVSHNLTIMRAGGVTHRNF
Disordered region (IsUnstruct)
*******IECKNWKIYANFFVGFVLIWAAGFSCAVTNPNDVAAINSLYAALGSPVLPGWVASAGDPCGESWQGVQCNASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDL******************LTTLHLQNNQLSGTLDVLQDLPLRDLNIENNLFSGPI*************************************************************************************KIVWISIAGVLLFVILALVFLLFMPRCIKRRGEVDRIFKRHQVGAF*******************************************************************************************************VIVKPIVP**************PFTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVK*************EFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSHNLTIM**********
Disordered Region (DISOPRED)
********ECKNWKIYANFFVGFVLIWAAGFSCAVTNPNDVAAINSLYAALGSPVLPGWVASAGDPCGESWQGVQCNASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLPLRDLNIENNLFSGPIPEKMLQIPNFRKDGNPFNSTVAP***************FFGPRPVSG*************PGKQADGPTALEDSNSGKKKSSTTKKIVWISIAGVLLFVILALVFLLFMPRCI************************************************EDHRSEMRRMGAI****************************************************************************************SFTIASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLD***********FLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSHNLTIMRAGGVTHR**
Disordered Region (DISEMBL)
MGVKRSNIECKNWKIYANFFVGFVLIWAAGFSCAVTNPNDVAAINSLYAALGSPVLPGWVASAGDPCGESWQGVQCNASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLPLRDLNIENNLFSGPIPEKMLQIPNFRKDGNPFNS**************PPAPPFFGPRP****************************************KKIVWISIAGVLLFVILALVFLLFMPRCIKRRGEVDRIFKRHQVGAFRGNNREEARDNGTLALPTNQ****************MRRMGAIPH***************PRRDDHEIDMSSLDMMMMPPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKK**********DDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSHNLTIMRAGGVTHRNF
Disordered Region (DISPRO)
*GVKRSNIECKNWKIYANFFVGFVLIWAAGFSCAVTNPNDVAAINSLYAALGSPVLPGWVASAGDPCGESWQGVQCNASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLPLRDLNIENNLFSGPIPEKMLQIPNFRKDGNPFNSTVAPSRPPTSSVTPPPAPPFFGPRPVSGSSPVSRTPPSQHTPGKQADGPTALEDSNSGKKKSSTTKKIVWISIAGVLLFVILALVFLLFMPRCIKRRGEVDRIFKRHQVGAFRGNNREEARDNGTLALPTNQMEKDASVKPKEDHRSEMRRMGAIPHAQNEQERNKQRMSTIPRRDDHEIDMSSLDMMMMPPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSHNLTIMRAGGVTHRNF
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGVKRSNIECKNWKIYANFFVGFVLIWAAGFSCAVTNPNDVAAINSLYAALGSPVLPGWVASAGDPCGESWQGVQCNASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLPLRDLNIENNLFSGPIPEKMLQIPNFRKDGNPFNSTVAPSRPPTSSVTPPPAPPFFGPRPVSGSSPVSRTPPSQHTPGKQADGPTALEDSNSGKKKSSTTKKIVWISIAGVLLFVILALVFLLFMPRCIKRRGEVDRIFKRHQVGAFRGNNREEARDNGTLALPTNQMEKDASVKPKEDHRSEMRRMGAIPHAQNEQERNKQRMSTIPRRDDHEIDMSSLDMMMMPPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSHNLTIMRAGGVTHRNF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	689	2.2.26 [Sep-21-2011]
Q6R2K3	776	Protein STRUBBELIG-RECEPT	yes	no	0.908	0.806	0.635	0.0
Q06BH3	775	Protein STRUBBELIG-RECEPT	no	no	0.902	0.802	0.564	0.0
Q8RWZ1	768	Protein STRUBBELIG OS=Ara	no	no	0.894	0.802	0.413	1e-133
Q9C8M9	719	Protein STRUBBELIG-RECEPT	no	no	0.815	0.781	0.347	9e-97
Q6R2J8	703	Protein STRUBBELIG-RECEPT	no	no	0.179	0.176	0.621	5e-60
Q9LUL4	717	Protein STRUBBELIG-RECEPT	no	no	0.293	0.281	0.466	2e-49
Q6R2K2	687	Protein STRUBBELIG-RECEPT	no	no	0.346	0.347	0.417	5e-48
Q6R2K1	699	Protein STRUBBELIG-RECEPT	no	no	0.332	0.327	0.417	2e-46
Q9FG24	735	Protein STRUBBELIG-RECEPT	no	no	0.322	0.302	0.402	7e-44
Q9CAL8	710	Proline-rich receptor-lik	no	no	0.233	0.226	0.478	7e-38

>sp|Q6R2K3|SRF3_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana GN=SRF3 PE=1 SV=1

 Score =  748 bits (1932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/655 (63%), Positives = 494/655 (75%), Gaps = 29/655 (4%)

Query: 26  IWAAGFSCAVTNPNDVAAINSLYAALGSPVLPGWVASAGDPCGESWQGVQCNASDIIAII 85
           IW    S A TNP+DVAAIN L+AALG+PVLPGW+AS GDPCGE+WQG+ CN SDII+I 
Sbjct: 21  IWIPSISLAATNPDDVAAINGLFAALGAPVLPGWIASGGDPCGEAWQGIICNVSDIISIT 80

Query: 86  LNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSL 145
           +N ANL GELG+NL  F+SIR ID SNN IGGSIPS LPVT+Q+FFLS NQF+GSIP SL
Sbjct: 81  VNAANLQGELGDNLAKFTSIRGIDFSNNRIGGSIPSTLPVTLQHFFLSANQFTGSIPESL 140

Query: 146 ATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQ 205
            TL+ L DMSLN+NLLSGE+PD FQ+L GLINLD+SSNN+SG LPPS+ENL  LTTL +Q
Sbjct: 141 GTLSFLNDMSLNDNLLSGELPDVFQNLVGLINLDISSNNISGTLPPSMENLLTLTTLRVQ 200

Query: 206 NNQLSGTLDVLQDLPLRDLNIENNLFSGPIPEKMLQIPNFRKDGNPFNSTVAPSRPPTSS 265
           NNQLSGTLDVLQ LPL+DLNIENNLFSGPIP+K+L IP F  +GNPFN+T+  S     S
Sbjct: 201 NNQLSGTLDVLQGLPLQDLNIENNLFSGPIPDKLLSIPKFLHEGNPFNATMINSTSTAPS 260

Query: 266 VTPPPAPPFFGP-RPVSGSSPVSRTPPSQHTPGKQADGPTALEDS---NSGKKKSSTTKK 321
           ++P  +P    P RP SG  P    PP++   GK ADGP+  E S   NS  K SS TKK
Sbjct: 261 LSPSLSPTKPAPTRPFSGVPP----PPNERNRGKVADGPSDSEGSSSENSKGKNSSHTKK 316

Query: 322 IVWISIAGVLLFVILALVFLLFMPRCIKRRGEVDRIFKRHQVGAFRGNNREEARDNGTLA 381
           I+ I+ AGVL+F+IL L  LL +P+C +RR   +R+FK HQVGA RG +RE A +NGT  
Sbjct: 317 IILIAFAGVLVFIILVLAILLLLPKCARRREHANRVFKPHQVGADRG-SRENALENGTPV 375

Query: 382 LPTNQMEKDASVKPKEDHRSEMRRMGAIPHAQNEQERNKQRMSTIPRRDDHEIDMSSLDM 441
           LP          + ++  R   ++ G  P   ++ ER + R + I R++  +ID S   M
Sbjct: 376 LP-------PPGRSEKVQREPFKKAGEEPKVLHDLERLR-RPAPISRQESQDIDFS---M 424

Query: 442 MMMPPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTTARSFTI 501
           +M         PPPPPPPPPPPPP+ EKV V PI+  E    KTS K   P T+ + ++I
Sbjct: 425 LMP--------PPPPPPPPPPPPPLDEKVTVMPIISPERPVKKTSPKRL-PLTSVKHYSI 475

Query: 502 ASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNI 561
           ASLQQYT SF+QENLIG+GMLGSVYRA+LP+GKL AVKKLDKRAS QQ+D EF+ELVNNI
Sbjct: 476 ASLQQYTESFAQENLIGSGMLGSVYRARLPNGKLFAVKKLDKRASEQQQDHEFIELVNNI 535

Query: 562 DRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAA 621
           D IRH+NIVEL GYCAEH QRLL+YEYCSNGTLQD LHSDDE K  LSWNTR+ MALGAA
Sbjct: 536 DMIRHSNIVELVGYCAEHDQRLLVYEYCSNGTLQDGLHSDDEFKKKLSWNTRVSMALGAA 595

Query: 622 RALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSHNL 676
           RALEYLHE+C+PPI+HRNFKSAN+LLDDDL+V VSDCGLAPLISSGSVSQ+S  L
Sbjct: 596 RALEYLHEVCEPPIIHRNFKSANVLLDDDLSVLVSDCGLAPLISSGSVSQLSGQL 650

Not essential for epidermal patterning and not redundant with STRUBBELIG.
Arabidopsis thaliana (taxid: 3702)

>sp|Q06BH3|SRF1_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsis thaliana GN=SRF1 PE=2 SV=2

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/662 (56%), Positives = 468/662 (70%), Gaps = 40/662 (6%)

Query: 20  FVGFVLIWAAGFSCAVTNPNDVAAINSLYAALGSPVLPGWVASAGDPCGESWQGVQCNAS 79
           F+ F LI     S A+TNP+DVAAINSL+ AL SP+LPGWVAS GDPCGESWQGV CNAS
Sbjct: 17  FLSFALISLPSLSLALTNPDDVAAINSLFLALESPLLPGWVASGGDPCGESWQGVLCNAS 76

Query: 80  DIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSG 139
            +  IIL  ANLGGELG  L  F+S++ +D SNNHIGGSIPS LPV++QN FLS N F+G
Sbjct: 77  QVETIILISANLGGELGVGLNMFTSLKAMDFSNNHIGGSIPSTLPVSLQNLFLSGNNFTG 136

Query: 140 SIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQL 199
           +IP SL++L  L+ MSLNNNLLSG+IPD FQ L  +IN+DLSSNNLSG LPPS++NLS L
Sbjct: 137 TIPESLSSLKSLSVMSLNNNLLSGKIPDVFQDLGLMINIDLSSNNLSGPLPPSMQNLSTL 196

Query: 200 TTLHLQNNQLSGTLDVLQDLPLRDLNIENNLFSGPIPEKMLQIPNFRKDGNPFNSTVAPS 259
           T+L LQNN LSG LDVLQDLPL+DLN+ENNLF+GPIPEK+L IPNF K GN FN T+APS
Sbjct: 197 TSLLLQNNHLSGELDVLQDLPLKDLNVENNLFNGPIPEKLLSIPNFIKGGNLFNVTIAPS 256

Query: 260 RPPTSSVTPPPAP-PFFGPRPVSGSSPVS----RTPPSQHTPGKQADGPTALEDSNSGKK 314
             P +  +P     PFFGP   + S+       R+PPS H P +    PT       GK+
Sbjct: 257 PSPETPPSPTSPKRPFFGPPSPNASAGHGQAHVRSPPSDHHPSR----PTP-----QGKE 307

Query: 315 KSSTTKKIVWISIAGVLLFVILALVFLLFMPRCIKRRGEVDRIFKRHQVGAFRGNNREEA 374
            S T+K+I+WISI G   FV+LALV LL   +C+++R + +++ K H    + G  RE +
Sbjct: 308 DSFTSKRIIWISILGAFSFVVLALVCLLCGRKCLRKREDSEQLSKPHLTSEY-GRAREGS 366

Query: 375 RDNGTLALPTNQMEKDASVKPKEDHRSEMRRMGAIPHAQNEQERNKQRMSTIPRRDDHEI 434
           R N ++  P+N   KD   +PKE       R+G         ER+   + +  +++ HEI
Sbjct: 367 RSNASMLPPSNTFNKDKEARPKE-------RVGGASKLHGGAERS---VGSESKQESHEI 416

Query: 435 DMSSLDMMMMPPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFT 494
           DM+   M +M P   PP               +++VI K   PAE +  +T++K+  P T
Sbjct: 417 DMNGNAMDLMHPSSIPP---------------IKRVIAKATEPAEASLKRTTSKSHGPLT 461

Query: 495 TARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEF 554
             + FT+ASLQQ+TNSFS ENLIG GMLGSVYRA+LP GKL AV+KLDK++ + +++ +F
Sbjct: 462 AVKHFTVASLQQHTNSFSHENLIGTGMLGSVYRAELPGGKLFAVRKLDKKSPNHEEEGKF 521

Query: 555 LELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRI 614
           LELVNNIDRIRHANIV+L G+C+EH QRLLI+EYC NGTL D+LH DD LK  LSWN R+
Sbjct: 522 LELVNNIDRIRHANIVQLVGFCSEHSQRLLIHEYCRNGTLHDLLHIDDRLKIELSWNVRV 581

Query: 615 RMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSH 674
           R+AL AA+ALEYLHEIC PP +HRNFKSANILLDDD+ V VSDCGLAPLISSG+VSQ+S 
Sbjct: 582 RIALEAAKALEYLHEICDPPSIHRNFKSANILLDDDIRVHVSDCGLAPLISSGAVSQLSG 641

Query: 675 NL 676
            L
Sbjct: 642 QL 643

Not essential for epidermal patterning and not redundant with STRUBBELIG.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWZ1|SUB_ARATH Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB PE=1 SV=1

 Score =  474 bits (1221), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 289/699 (41%), Positives = 410/699 (58%), Gaps = 83/699 (11%)

Query: 13  WKIYANFFVGFVLIWAAGFSCAVTNPNDVAAINSLYAALGSPVLPGWVASAGDPCGESWQ 72
           W++   FF   VL     FS  VTN  DV+AIN+LY  LG+P L  W+A  GDPCGE WQ
Sbjct: 6   WEV---FFGLSVLALTMPFSAGVTNLRDVSAINNLYITLGAPSLHHWLAFGGDPCGEKWQ 62

Query: 73  GVQCNASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFL 132
           GV C++S+I  I + G  +GG L + L  FSSI+V+D S+NHI G+IP  LP +++N  L
Sbjct: 63  GVVCDSSNITEIRIPGMKVGGGLSDTLADFSSIQVMDFSSNHISGTIPQALPSSIRNLSL 122

Query: 133 SDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPS 192
           S N+F+G+IP +L+ L+ L+++SL +NLLSGEIPD FQ L+ L  LDLSSN L G LP S
Sbjct: 123 SSNRFTGNIPFTLSFLSDLSELSLGSNLLSGEIPDYFQQLSKLTKLDLSSNILEGHLPSS 182

Query: 193 LENLSQLTTLHLQNNQLSGTLDVLQDLPLRDLNIENNLFSGPIPEKMLQIPNFRKDGNPF 252
           + +L+ L  L+LQ+N+L+GTLDV++DL L DLN+ENNLFSGPIP  +L+IPNF+KDG PF
Sbjct: 183 MGDLASLKILYLQDNKLTGTLDVIEDLFLTDLNVENNLFSGPIPPNLLKIPNFKKDGTPF 242

Query: 253 NSTVAPSRPPTSSVTPPP---APPFFGPRPVSG--------------------SSPVSRT 289
           N+++    PP     PP    APP     PVSG                    S P+  +
Sbjct: 243 NTSIITPPPPPVVDPPPATHRAPPVPRIPPVSGVPPAPFAPFAPLQPQQHPPPSPPLVWS 302

Query: 290 PPSQHT----PGKQADGPTALE---DSNSGKKKSSTTKKIVWISIAGVLLFVILALVFLL 342
           PPS       P     G   L+    S SG  K  +T++I+ +  +  ++ ++  L   L
Sbjct: 303 PPSSDNGGGDPWNSVSGQPTLQISPPSGSGSGKFWSTQRIILVVSSVAIIVLVSGLCVTL 362

Query: 343 FMPRCIKRRGEVDRIFKRHQVGAFRGNNREEARDNGTLALPT-NQMEKDASVKPKEDHRS 401
           +  RC +      +I+ R+  GA +   R       +   PT  ++ ++  VKP + + +
Sbjct: 363 W--RCCR-----SKIYNRYYSGARKDLQRPYFNKPPSQPTPTMGKVSREPMVKPFDGYGA 415

Query: 402 EMRRMGAIPHAQNEQERNKQRMSTIPRRDDHEIDMSSLDMMMMPPPPPPPPPPPPPPPPP 461
             R+ G  P  Q  +E  +     +P    +  D+++      P  P   P         
Sbjct: 416 GDRKYG-YPMPQRAEESRR----AMPPTSYYNKDVNT------PQKPLQQP--------- 455

Query: 462 PPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPF-------TTARSFTIASLQQYTNSFSQE 514
                          P +  +  T++K A  F       ++A  FTIASLQQYTN+FS+E
Sbjct: 456 ---------------PRQFQSNDTASKRAAHFPPGLNSSSSATVFTIASLQQYTNNFSEE 500

Query: 515 NLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKG 574
           N+IG G +G+VYRA+L  GK LAVKKL    +  Q D EFL LV+N+ +++  +I+EL G
Sbjct: 501 NIIGEGSIGNVYRAELRHGKFLAVKKLSNTINRTQSDGEFLNLVSNVLKLKRGHILELLG 560

Query: 575 YCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPP 634
           YC E GQRLL+YEYC NG+LQD LH D +L   L+WN RI +ALGA++AL++LHE+CQPP
Sbjct: 561 YCNEFGQRLLVYEYCPNGSLQDALHLDRKLHKKLTWNVRINIALGASKALQFLHEVCQPP 620

Query: 635 IVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVS 673
           +VH+NFKS+ +LLD  L+V V+D GLA ++     SQ++
Sbjct: 621 VVHQNFKSSKVLLDGKLSVRVADSGLAYMLPPRPTSQMA 659

Regulates the expression of transcription factors that define the cell fates. Seems to be required for the regulation of cell shape and the orientation of the mitotic division plane. Involved in root hair specification, in the formation of the outer integument and the shape of organs such as carpels and petals and is necessary for the shape and height of the stem.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8M9|SRF6_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1

 Score =  355 bits (910), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 229/659 (34%), Positives = 330/659 (50%), Gaps = 97/659 (14%)

Query: 11  KNWKIYANF---FVGFVLIWAAGFSCAVTNPNDVAAINSLYAALGSPV-LPGWVASAGDP 66
           +NW + A F    VGF L +  G     T+ +D +A+N+L++ + SP  L  W A+AGDP
Sbjct: 3   ENWAVVALFTLCIVGFELRFIHG----ATDASDTSALNTLFSGMHSPAQLTQWTAAAGDP 58

Query: 67  CGESWQGVQCNASDIIAIILNGANLGGELG-ENLGAFSSIRVIDLSNNHIGGSIPSILPV 125
           CG++W+GV C+ S +  I L+G  L G LG   L   +S+  +DLS+N++GG +P   P 
Sbjct: 59  CGQNWRGVTCSGSRVTQIKLSGLELSGTLGGYMLDKLTSLTELDLSSNNLGGDLPYQFPP 118

Query: 126 TMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNL 185
            +Q   L++NQF+G+   SL+ +T L  ++L +N   G+I   F  L  L  LD S N+ 
Sbjct: 119 NLQRLNLANNQFTGAASYSLSQITPLKYLNLGHNQFKGQIAIDFSKLDSLTTLDFSFNSF 178

Query: 186 SGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLPLRDLNIENNLFSGPIPEKMLQIPNF 245
           +  LP +  +L+ L +L+LQNNQ SGT+DVL  LPL  LNI NN F+G IP  +  I   
Sbjct: 179 TNSLPATFSSLTSLKSLYLQNNQFSGTVDVLAGLPLETLNIANNDFTGWIPSSLKGI-TL 237

Query: 246 RKDGNPFNSTVAPSRPPTSSVTPPPAPPFFGPRPVSGSSPVSRTPPSQHTPGKQADGPTA 305
            KDGN FN+  AP  PP +                       R  PS+ + G+++     
Sbjct: 238 IKDGNSFNTGPAPPPPPGTPPI--------------------RGSPSRKSGGRESRSSDE 277

Query: 306 LEDSNSGKKKSSTTKKIVWISIAGVLLFVILALVFLLFMPRCIKRRGEVDRIFKRHQVGA 365
               N   KKS      +   I  +L+   L + F LF  +  KR   +D          
Sbjct: 278 -STRNGDSKKSGIGAGAIAGIIISLLVVTALLVAFFLFRRKKSKRSSPMDI--------- 327

Query: 366 FRGNNREEARDNGTLALPTNQMEKDASVKPKEDHRSEMRRMGAIPHAQNEQERNKQRMST 425
                  E  DN    L +N   ++ S+                   Q+      +++ T
Sbjct: 328 -------EKTDNQPFTLASNDFHENNSI-------------------QSSSSVETKKLDT 361

Query: 426 IPRRDDHEIDMSSLDMMMMPPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKT 485
                       SL + + PPP               P  V +  +V P           
Sbjct: 362 ------------SLSINLRPPPIDRNKSFDDEDSTRKPIAVKKSTVVVP----------- 398

Query: 486 STKTAKPFTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRA 545
                   +  R +++A LQ  T SFS +NL+G G  G VYRA+  DGK+LAVKK+D  A
Sbjct: 399 --------SNVRLYSVADLQIATGSFSVDNLLGEGTFGRVYRAEFDDGKVLAVKKIDSSA 450

Query: 546 SSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELK 605
                 D+F+E+V+ I  + H N+ +L GYCAEHGQ L++YE+  NG+L D LH  +E  
Sbjct: 451 LPHGMTDDFIEMVSKIANLDHPNVTKLVGYCAEHGQHLVVYEFHKNGSLHDFLHLSEEES 510

Query: 606 NNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI 664
             L WN+R+++ALG ARALEYLHE+C P IV +N KSANILLD +L   +SD GLA  +
Sbjct: 511 KALVWNSRVKIALGTARALEYLHEVCSPSIVDKNIKSANILLDSELNPHLSDSGLASFL 569

Arabidopsis thaliana (taxid: 3702)

>sp|Q6R2J8|SRF8_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1

 Score =  233 bits (593), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 105/169 (62%), Positives = 133/169 (78%)

Query: 495 TARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEF 554
           TA  +T++SLQ  TNSFSQEN+IG G LG VYRA+ P+GK++A+KK+D  A S Q++D F
Sbjct: 379 TASQYTVSSLQVATNSFSQENIIGEGSLGRVYRAEFPNGKIMAIKKIDNAALSLQEEDNF 438

Query: 555 LELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRI 614
           LE V+N+ R+RH NIV L GYC EHGQRLL+YEY  NG L D LH++D+   NL+WN R+
Sbjct: 439 LEAVSNMSRLRHPNIVPLAGYCTEHGQRLLVYEYVGNGNLDDTLHTNDDRSMNLTWNARV 498

Query: 615 RMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPL 663
           ++ALG A+ALEYLHE+C P IVHRNFKSANILLD++L   +SD GLA L
Sbjct: 499 KVALGTAKALEYLHEVCLPSIVHRNFKSANILLDEELNPHLSDSGLAAL 547

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUL4|SRF7_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsis thaliana GN=SRF7 PE=1 SV=1

 Score =  197 bits (501), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 98/210 (46%), Positives = 129/210 (61%), Gaps = 8/210 (3%)

Query: 455 PPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTTARSFTIASLQQYTNSFSQE 514
           PPP          +  + KPIV  +   V  S           ++T++ LQ  TNSFS +
Sbjct: 371 PPPSERHKSFDDDDSTMRKPIVAKKAAVVVPSN--------VNTYTVSDLQVATNSFSVD 422

Query: 515 NLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKG 574
           NL+G G  G VYRAQ  DGK+LAVKK+D  A      D+F E+V+ I  + H N+ +L G
Sbjct: 423 NLLGEGTFGRVYRAQFEDGKVLAVKKIDSSALPTDTADDFTEIVSKIAHLDHENVTKLDG 482

Query: 575 YCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPP 634
           YC+EHGQ L++YE+  NG+L D LH  +E    L WN R+++ALG ARALEYLHE+C P 
Sbjct: 483 YCSEHGQHLVVYEFHRNGSLHDFLHLAEEESKPLIWNPRVKIALGTARALEYLHEVCSPS 542

Query: 635 IVHRNFKSANILLDDDLAVSVSDCGLAPLI 664
           IVH+N KSANILLD +L   +SD GLA  +
Sbjct: 543 IVHKNIKSANILLDSELNPHLSDSGLASFL 572

Arabidopsis thaliana (taxid: 3702)

>sp|Q6R2K2|SRF4_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsis thaliana GN=SRF4 PE=2 SV=1

 Score =  192 bits (489), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 103/247 (41%), Positives = 152/247 (61%), Gaps = 8/247 (3%)

Query: 24  VLIWAAGFSC------AVTNPNDVAAINSLYAALGSPV-LPGWVASAGDPCGESWQGVQC 76
           VL++ A F        A T+  DV+A+N  Y ++ SP  L GW +S GDPCG+SW G+ C
Sbjct: 9   VLVFIACFGIFTSVVLAKTDSQDVSALNDAYKSMNSPSKLKGWSSSGGDPCGDSWDGITC 68

Query: 77  NASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQ 136
             S +  I ++G  L G LG  LG   S+  +D+S N++ G++P  LP  +     S+N 
Sbjct: 69  KGSSVTEIKVSGRGLSGSLGYQLGNLKSLTYLDVSKNNLNGNLPYQLPDKLTYLDGSEND 128

Query: 137 FSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENL 196
           F+G++P S++ +  L+ ++L  N L+GE+ D FQ L  L  +DLSSN L+G+LP S  NL
Sbjct: 129 FNGNVPYSVSLMNDLSYLNLGRNNLNGELSDMFQKLPKLETIDLSSNQLTGKLPQSFANL 188

Query: 197 SQLTTLHLQNNQLSGTLDVLQDLP-LRDLNIENNLFSGPIPEKMLQIPNFRKDGNPFNST 255
           + L TLHLQ NQ  G+++ L+DLP + D+N+ NN F+G IP ++  I N    GN ++S 
Sbjct: 189 TGLKTLHLQENQFKGSINALRDLPQIDDVNVANNQFTGWIPNELKNIGNLETGGNKWSSG 248

Query: 256 VAPSRPP 262
            APS PP
Sbjct: 249 RAPSPPP 255

Acts as a direct positive regulator of leaf size but not leaf shape.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6R2K1|SRF5_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana GN=SRF5 PE=2 SV=1

 Score =  188 bits (477), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 96/230 (41%), Positives = 144/230 (62%), Gaps = 1/230 (0%)

Query: 34  AVTNPNDVAAINSLYAALGSPV-LPGWVASAGDPCGESWQGVQCNASDIIAIILNGANLG 92
           A T+  +V+A+N ++ +L SP  L GW A+ GDPC +SW+GV+C  S +  + L+G  LG
Sbjct: 22  AKTDNQEVSALNVMFTSLNSPSKLKGWKANGGDPCEDSWEGVKCKGSSVTELQLSGFELG 81

Query: 93  GELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLT 152
           G  G  L    S+   DLS N++ G+IP  LP  + N   S+N+  G++P SL+ +  L 
Sbjct: 82  GSRGYLLSNLKSLTTFDLSKNNLKGNIPYQLPPNIANLDFSENELDGNVPYSLSQMKNLQ 141

Query: 153 DMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGT 212
            ++L  N L+GE+PD FQ L+ L  LD S N LSG+LP S  NL+ L  LHLQ+N+ +G 
Sbjct: 142 SINLGQNKLNGELPDMFQKLSKLETLDFSLNKLSGKLPQSFANLTSLKKLHLQDNRFTGD 201

Query: 213 LDVLQDLPLRDLNIENNLFSGPIPEKMLQIPNFRKDGNPFNSTVAPSRPP 262
           ++VL++L + DLN+E+N F G IP ++  I +    GN +++  AP  PP
Sbjct: 202 INVLRNLAIDDLNVEDNQFEGWIPNELKDIDSLLTGGNDWSTETAPPPPP 251

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG24|SRF2_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsis thaliana GN=SRF2 PE=2 SV=1

 Score =  179 bits (454), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 91/226 (40%), Positives = 140/226 (61%), Gaps = 4/226 (1%)

Query: 461 PPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTTARSFTIASLQQYTNSFSQENLIGAG 520
           PPP P +  +   P+   +    K+ + T +  + A+ F+ A LQ  TN FS+ENL+G G
Sbjct: 365 PPPAPQLRHLPSPPVRIDKSARRKSFSATCQYPSFAKLFSAAELQLATNCFSEENLLGEG 424

Query: 521 MLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHG 580
            LGSVYRA+LPDG+   V+ +   + S  ++++F E++    ++RH NIV L G+C E+G
Sbjct: 425 PLGSVYRAKLPDGQFAVVRNIPMSSLSLHEEEQFTEVLQTASKLRHPNIVTLLGFCIENG 484

Query: 581 QRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNF 640
           + LL+YEY  + +L + +H  DE+   LSW  R+R+A+G ARAL+YLH    PPI H + 
Sbjct: 485 EHLLVYEYVGHLSLYNAMH--DEVYKPLSWGLRLRIAIGVARALDYLHSSFCPPIAHSDL 542

Query: 641 KSANILLDDDLAVSVSDCGLAPL--ISSGSVSQVSHNLTIMRAGGV 684
           K+ NILLD++L   ++DCGLA L  ++S SV   +  + I   G +
Sbjct: 543 KATNILLDEELTPRIADCGLASLRPLTSNSVKLRASEIAIQNTGYI 588

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAL8|PEK13_ARATH Proline-rich receptor-like protein kinase PERK13 OS=Arabidopsis thaliana GN=PERK13 PE=2 SV=1

 Score =  159 bits (402), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 79/165 (47%), Positives = 103/165 (62%), Gaps = 4/165 (2%)

Query: 499 FTIASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELV 558
           FT   L   T  FS+ N++G G  G VY+ +L DGKL+AVK+L  +  S Q D EF   V
Sbjct: 341 FTYEELTDITEGFSKHNILGEGGFGCVYKGKLNDGKLVAVKQL--KVGSGQGDREFKAEV 398

Query: 559 NNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMAL 618
             I R+ H ++V L GYC    +RLLIYEY  N TL+  LH   + +  L W  R+R+A+
Sbjct: 399 EIISRVHHRHLVSLVGYCIADSERLLIYEYVPNQTLEHHLHG--KGRPVLEWARRVRIAI 456

Query: 619 GAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPL 663
           G+A+ L YLHE C P I+HR+ KSANILLDD+    V+D GLA L
Sbjct: 457 GSAKGLAYLHEDCHPKIIHRDIKSANILLDDEFEAQVADFGLAKL 501

Regulates negatively root hairs elongation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	689
356547026	784	PREDICTED: protein STRUBBELIG-RECEPTOR F	0.955	0.839	0.656	0.0
356542131	784	PREDICTED: protein STRUBBELIG-RECEPTOR F	0.955	0.839	0.638	0.0
297739262	781	unnamed protein product [Vitis vinifera]	0.955	0.842	0.676	0.0
255553857	709	lrr receptor-linked protein kinase, puta	0.856	0.832	0.627	0.0
449479018	791	PREDICTED: LOW QUALITY PROTEIN: protein	0.968	0.843	0.647	0.0
304281946	776	strubbelig receptor family 3 [Arabidopsi	0.908	0.806	0.635	0.0
42566272	776	STRUBBELIG-receptor family 3 [Arabidopsi	0.908	0.806	0.635	0.0
304281933	776	SRF3 [Arabidopsis thaliana]	0.908	0.806	0.635	0.0
224124596	699	predicted protein [Populus trichocarpa]	0.854	0.842	0.674	0.0
304281935	776	SRF3 [Arabidopsis thaliana]	0.908	0.806	0.633	0.0

>gi|356547026|ref|XP_003541919.1| PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Glycine max]

 Score =  844 bits (2180), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/692 (65%), Positives = 530/692 (76%), Gaps = 34/692 (4%)

Query: 1   MGVKRSNIECKNWKIYANFFVGFV--LIWAAGFSCAVTNPNDVAAINSLYAALGSPVLPG 58
           MG +RS  + K  KIY    +GF+  LI    FS A T+P DVAAIN LY ALG+PVLPG
Sbjct: 1   MGEERSGSQNKRVKIYGEVLLGFIIMLICTVQFSLADTDPIDVAAINRLYTALGNPVLPG 60

Query: 59  WVASAGDPCGESWQGVQCNASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGS 118
           WV+SAGDPCGE WQGVQCN S I  IILNGANLGGELG++LG+F SIR I L+NNHIGG+
Sbjct: 61  WVSSAGDPCGEGWQGVQCNGSVIQEIILNGANLGGELGDSLGSFVSIRAIVLNNNHIGGN 120

Query: 119 IPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINL 178
           IPS LPVT+Q+FFLSDNQF+GSIP+SL+TLT LTDMSLN NLL+GEIPDAFQSLT LINL
Sbjct: 121 IPSSLPVTLQHFFLSDNQFTGSIPASLSTLTELTDMSLNGNLLTGEIPDAFQSLTQLINL 180

Query: 179 DLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLPLRDLNIENNLFSGPIPEK 238
           DLS+NNLSGELPPS+ENLS LT++HLQNN LSGTLDVLQ LPL+DLN+ENN F+GPIP K
Sbjct: 181 DLSNNNLSGELPPSMENLSALTSVHLQNNNLSGTLDVLQGLPLQDLNVENNQFAGPIPPK 240

Query: 239 MLQIPNFRKDGNPF----NSTVAPSRPPTSSVTPPPAPPFFGPRPVSGSSPVSRTPPSQH 294
           +L IP+FRKDGNPF    NST+AP+ PP S   P PA P       SG+   S TP S  
Sbjct: 241 LLSIPSFRKDGNPFNLNGNSTIAPAHPPRS---PVPATP-------SGTV-ASVTPSSGR 289

Query: 295 TPGKQADGPTALEDSNSGKKKSSTTKKIVWISIAGVLLFVILALVFLLFMPRCIKRRGEV 354
            P K  +GPTA ++SNS K K + TKK+VWIS++G+L+F+IL L  LLF+PRC KR   V
Sbjct: 290 IPTKPTEGPTAAKESNSEKSKKN-TKKVVWISVSGILVFIILVLGLLLFVPRCSKREW-V 347

Query: 355 DRIFKRHQVGAFRGNNREEARDNGTLALPTNQME---KDASVKPKEDHRSEMRRMGAIPH 411
           +R  K+HQVGA+ G  R+  R+ G    P NQ E   K A V+PK DH+ E RR+ AIP+
Sbjct: 348 NRSSKQHQVGAY-GVERQNPREYGAFVQPPNQTEKVPKGAIVRPKGDHQEEARRVRAIPN 406

Query: 412 AQNEQERNKQRMSTIPRRDDHEIDMSSLDMMMMPPPPPPPPPPPPPPPPPPPPPVVEKVI 471
            Q EQE+++QRM TIP+  +HEIDMSSLD+  M           P PPPPPPP  VE+VI
Sbjct: 407 PQGEQEKDEQRMETIPKLLEHEIDMSSLDVFSM-----------PSPPPPPPPLPVERVI 455

Query: 472 VKPIVPAEGTAVKTSTKTAKPFTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQLP 531
           V+P +  +   +    K+  P T A++FTIASLQQYTNSFSQ+NLIG GMLGSVYRA+LP
Sbjct: 456 VEPTLFHKEANINPPKKSPVPPTFAKTFTIASLQQYTNSFSQDNLIGLGMLGSVYRAELP 515

Query: 532 DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSN 591
           DGK+LAVKKLDKR S QQ DDEFLEL+N+IDRIRH NIVEL GYCAEHGQRLLIYEYCSN
Sbjct: 516 DGKILAVKKLDKRVSDQQTDDEFLELINSIDRIRHPNIVELIGYCAEHGQRLLIYEYCSN 575

Query: 592 GTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDL 651
           G+LQD LHSDDE K  LSWN RIR+ALGAARALEYLHE  QP +VHRNFKSANILLDDD+
Sbjct: 576 GSLQDALHSDDEFKTRLSWNARIRIALGAARALEYLHEQFQPSVVHRNFKSANILLDDDV 635

Query: 652 AVSVSDCGLAPLISSGSVSQVSHNLTIMRAGG 683
           +V VSDCGLAPLI+ GSVSQ+S  L      G
Sbjct: 636 SVRVSDCGLAPLITKGSVSQLSGQLLTAYGYG 667

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542131|ref|XP_003539524.1| PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Glycine max]

 Score =  831 bits (2146), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/692 (63%), Positives = 522/692 (75%), Gaps = 34/692 (4%)

Query: 1   MGVKRSNIECKNWKIYANFFVGFV--LIWAAGFSCAVTNPNDVAAINSLYAALGSPVLPG 58
           MG +RS ++ K  KI+    +GF+  LI    FS A T+P DVAAIN LY ALG+PVLPG
Sbjct: 1   MGEERSGLQNKRVKIHGEVLLGFIIMLICTIQFSVADTDPVDVAAINRLYTALGNPVLPG 60

Query: 59  WVASAGDPCGESWQGVQCNASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGS 118
           WV+SAGDPCG+ WQGVQCN S I  IILNGANLGGELG++LG+F SIR I L+NNHIGGS
Sbjct: 61  WVSSAGDPCGQGWQGVQCNGSVIQEIILNGANLGGELGDSLGSFVSIRAIVLNNNHIGGS 120

Query: 119 IPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINL 178
           IPS LPVT+Q+FFLSDNQF+GSIP+SL+TLT LTDMSLN+NLL+GE+PDAFQSL  LINL
Sbjct: 121 IPSSLPVTLQHFFLSDNQFTGSIPASLSTLTELTDMSLNDNLLTGEVPDAFQSLMQLINL 180

Query: 179 DLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLPLRDLNIENNLFSGPIPEK 238
           DLS+NNLSGELPPS+ENLS LT++HLQNN+LSGTLDVLQDLPL+DLN+ENN F+GPIP K
Sbjct: 181 DLSNNNLSGELPPSMENLSALTSVHLQNNKLSGTLDVLQDLPLQDLNVENNQFAGPIPPK 240

Query: 239 MLQIPNFRKDGNPF----NSTVAPSRPPTSSVTPPPAPPFFGPRPVSGSSPVSRTPPSQH 294
           +L IP+FRKDGNPF    NST+AP+ PP S VT  P             + VS TP S  
Sbjct: 241 LLSIPSFRKDGNPFNLNDNSTIAPAHPPHSPVTASPT-----------GTVVSVTPSSGR 289

Query: 295 TPGKQADGPTALEDSNSGKKKSSTTKKIVWISIAGVLLFVILALVFLLFMPRCIKRRGEV 354
            P K   GPTA ++SNSGK K + TKK+VWISI+G+L+F+IL L  LLF+PRC  RR  V
Sbjct: 290 VPTKPTKGPTAAKESNSGKSKKN-TKKVVWISISGILVFIILVLGLLLFVPRC-SRRERV 347

Query: 355 DRIFKRHQVGAFRGNNREEARDNGTLALPTNQME---KDASVKPKEDHRSEMRRMGAIPH 411
           +R  K+HQVGA+ G  R+  RD G    P +Q E   K A V+ K DH+ E RR+  IP 
Sbjct: 348 NRSSKQHQVGAY-GGERQNPRDYGAFVQPPSQTEKVPKGAVVRLKGDHQEEARRLRTIPK 406

Query: 412 AQNEQERNKQRMSTIPRRDDHEIDMSSLDMMMMPPPPPPPPPPPPPPPPPPPPPVVEKVI 471
            Q EQE+++QRM TIP+  +HEIDMSSLD+  M           P PPPPPPP   E+VI
Sbjct: 407 PQGEQEKDEQRMETIPKLLEHEIDMSSLDVFSM-----------PSPPPPPPPLPAERVI 455

Query: 472 VKPIVPAEGTAVKTSTKTAKPFTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQLP 531
           V+     +   +    K+  P T  ++FTIASLQQYTNSFSQ+NLIG GMLGSVYRA+LP
Sbjct: 456 VESASFHKEANINPPKKSPVPPTFVKTFTIASLQQYTNSFSQDNLIGLGMLGSVYRAELP 515

Query: 532 DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSN 591
           DGK+LAVKKLDKR S  Q DDEFLEL+N+IDRIRH NIVEL GYCAEHGQRLLIYEYCSN
Sbjct: 516 DGKILAVKKLDKRVSDHQTDDEFLELINSIDRIRHPNIVELIGYCAEHGQRLLIYEYCSN 575

Query: 592 GTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDL 651
           G+LQD LHS DE K  LSWN RIR+ALGAAR+LEYLHE  QPP+VHRNFKSA+ILL DD+
Sbjct: 576 GSLQDALHSHDEFKTRLSWNARIRIALGAARSLEYLHEQFQPPVVHRNFKSASILLYDDV 635

Query: 652 AVSVSDCGLAPLISSGSVSQVSHNLTIMRAGG 683
           +V VSDCGL+PLI+ GSVSQ+S  L      G
Sbjct: 636 SVRVSDCGLSPLITKGSVSQLSGQLLTAYGYG 667

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739262|emb|CBI28913.3| unnamed protein product [Vitis vinifera]

 Score =  824 bits (2128), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/678 (67%), Positives = 539/678 (79%), Gaps = 20/678 (2%)

Query: 1   MGVKRSNIECKNWKIYANFFVGFVLIWAAGFSCAVTNPNDVAAINSLYAALGSPVLPGWV 60
           MG KRS I+C N +IYA  FVGFVLI+AA      T+P DV AIN+LYAALGSP+LPGWV
Sbjct: 1   MGGKRSAIDCLNLEIYAQTFVGFVLIFAAQVLLGYTSPGDVTAINNLYAALGSPLLPGWV 60

Query: 61  ASAGDPCGESWQGVQCNASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIP 120
           ++ GDPC ++WQGV CN S+I +IILNGANLGGELG++LG F+SI+VIDLSNN IGGSIP
Sbjct: 61  STGGDPCADAWQGVSCNGSEINSIILNGANLGGELGDSLGTFASIKVIDLSNNQIGGSIP 120

Query: 121 SILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDL 180
           S LP+T+QNFFLS NQF+GSIP+SL++L+LLTDMSLNNNLL+GEIPDAFQ+L GLINLDL
Sbjct: 121 SSLPLTLQNFFLSANQFTGSIPTSLSSLSLLTDMSLNNNLLTGEIPDAFQALVGLINLDL 180

Query: 181 SSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLPLRDLNIENNLFSGPIPEKML 240
           SSN+LSG+LPPS+ENLS LTTL LQ NQLSGTLDVLQDLPL+DLN+ENNLFSG IP+K+L
Sbjct: 181 SSNHLSGQLPPSMENLSSLTTLRLQINQLSGTLDVLQDLPLKDLNVENNLFSGTIPDKLL 240

Query: 241 QIPNFRKDGNPFNSTVAPSRPPTSSVTPPPAPPFFGPRPVSGSSPVSRTPPSQHTPGKQA 300
            IPNFRKDGNPF +  AP   PTS +T P  PP     P S   PV           K A
Sbjct: 241 SIPNFRKDGNPFGNVTAPLLAPTSPLTLPSPPPPLSGPPSSNQPPV-----------KPA 289

Query: 301 DGPTALEDSNS-GKKKSSTTKKIVWISIAGVLLFVILALVFLLFMPRCIKRRGEVDRIFK 359
           DGP+A E+SNS GK K  +TK+IVWISI  VL+F+IL L  +L +  C   R E D I K
Sbjct: 290 DGPSATEESNSGGKGKGLSTKRIVWISITVVLVFIILVLALVLLVKWCCGERQESDWISK 349

Query: 360 RHQVGAFRGNNREEARDNGTLALPTNQMEKDASVKPKEDHRSEMRRMGAIPHAQNEQERN 419
           R++ GA++G +R   RDNG+L     Q+ K+A   PKE+H+  +RR+G  P  QNEQ+RN
Sbjct: 350 RNETGAYKG-SRLNLRDNGSLE---QQVPKEAVGTPKEEHQEVVRRIGVAPKPQNEQDRN 405

Query: 420 KQRMSTIPRRDDHEIDMSSLDMMMMPPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAE 479
            +RM TIP++D HEID+S LD+MM     PPPPPPPPPPPPPPPPP+VE VIV PIVP E
Sbjct: 406 VERMFTIPKQDSHEIDISGLDVMMP----PPPPPPPPPPPPPPPPPLVETVIVNPIVPVE 461

Query: 480 GTAVKTSTKTAKPFTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVK 539
             A K S KT  P  +ARSFTIASLQQYTNSFSQENLIG+GMLG+VYRAQLP GKLLAVK
Sbjct: 462 VNAEKPSMKTLNPPISARSFTIASLQQYTNSFSQENLIGSGMLGTVYRAQLPGGKLLAVK 521

Query: 540 KLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLH 599
           KLDK+  +QQKDDEF +LVN+ID IRHAN+VEL GYCAEHG+RLLIYEYCS+GTL D LH
Sbjct: 522 KLDKKICNQQKDDEFFDLVNSIDGIRHANVVELMGYCAEHGERLLIYEYCSDGTLHDALH 581

Query: 600 SDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCG 659
           SDDE K  LSW+ R+RMALGAARAL+YLHE+C+PPIVHRNFKSAN+LLDD+L V VSDCG
Sbjct: 582 SDDEFKKKLSWSARVRMALGAARALQYLHEVCRPPIVHRNFKSANVLLDDELTVRVSDCG 641

Query: 660 LAPLISSGSVSQVSHNLT 677
           LAPLIS  SVSQ+S  L+
Sbjct: 642 LAPLISRCSVSQLSGRLS 659

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553857|ref|XP_002517969.1| lrr receptor-linked protein kinase, putative [Ricinus communis] gi|223542951|gb|EEF44487.1| lrr receptor-linked protein kinase, putative [Ricinus communis]

 Score =  792 bits (2046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/684 (62%), Positives = 488/684 (71%), Gaps = 94/684 (13%)

Query: 1   MGVKRSNIECKN-WKIYANFFVGFVLIWAAGFSCAVTNPNDVAAINSLYAALGSPVLPGW 59
           MG KRS  E  +  +IY   FVGFVLI++A  S  VTNP+DVAAINSLY++LGSP+LPGW
Sbjct: 1   MGTKRSGKEEYSVLEIYLKVFVGFVLIYSATISYGVTNPSDVAAINSLYSSLGSPILPGW 60

Query: 60  VASAGDPCGESWQGVQCNASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSI 119
           VAS GDPCGE WQGV C ASDI +I                        DLS+N IGGSI
Sbjct: 61  VASGGDPCGELWQGVACEASDITSI------------------------DLSSNRIGGSI 96

Query: 120 PSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLD 179
           PS LPVTMQNFFL+ N F+GSIP S+++LTLLT MSLNNN LSGEIPD+FQ L GLINLD
Sbjct: 97  PSNLPVTMQNFFLAANNFTGSIPDSISSLTLLTAMSLNNNFLSGEIPDSFQFLAGLINLD 156

Query: 180 LSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLPLRDLNIENNLFSGPIPEKM 239
           LSSNN SG+LPPS ENL  LTTL LQ NQLSGTL+VL+DLPL+DLNIENNLFSGPIPEK+
Sbjct: 157 LSSNNFSGQLPPSFENLIHLTTLRLQENQLSGTLNVLEDLPLKDLNIENNLFSGPIPEKL 216

Query: 240 LQIPNFRKDGNPFNSTVAPSRPPTSSVTPPPAPPFFGPRPVSGSSPVSRTPPSQHTPGKQ 299
           L IP+FRKDGNPFN++ AP   PTS +TPPPAP       +SG+     +P S  TPGKQ
Sbjct: 217 LAIPDFRKDGNPFNNSTAPLPAPTSPLTPPPAPG------LSGAPSSPSSPSSGKTPGKQ 270

Query: 300 ADGPTALEDSNSGKKKSSTTKKIVWISIAGVLLFVILALVFLLFMPRCIKRRGEVDRIFK 359
            DGP++ E+S+SG+KK  TTK++VWISIAGVLLFVILA+  +LFMPRC +RR E  RIFK
Sbjct: 271 IDGPSSPEESSSGEKKFLTTKRVVWISIAGVLLFVILAIALVLFMPRCSRRREEAGRIFK 330

Query: 360 RHQVGAFRGNNREEARDNGTLALPTNQMEKDASVKPKEDHRSEMRRMGAIPHAQNEQERN 419
           RHQVGA +GN RE  RD+G+L  PTN                             E E+ 
Sbjct: 331 RHQVGADKGN-RENPRDHGSLDQPTN-----------------------------ETEKV 360

Query: 420 KQRMSTIPRRDDHEIDMSSLDMMMMPPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAE 479
            +    +P+ D                                P P  + VIV P VP E
Sbjct: 361 SKEALALPKEDH-------------------------------PKP--QTVIVTPTVPTE 387

Query: 480 GTAVKTSTKTAKPFTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVK 539
            +  K   K   P T+ARSFTIASLQQYTNSFSQENLIG GMLG+VYRA+LP+GKLLAVK
Sbjct: 388 ASTAKPPIKAQNPLTSARSFTIASLQQYTNSFSQENLIGGGMLGNVYRAELPNGKLLAVK 447

Query: 540 KLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLH 599
           KLD++ASSQQKDDEF+ELVNNIDRIRHAN+VEL GYCAEHGQRLLIYEYCSNGTLQD LH
Sbjct: 448 KLDQKASSQQKDDEFIELVNNIDRIRHANVVELMGYCAEHGQRLLIYEYCSNGTLQDALH 507

Query: 600 SDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCG 659
           SDDELK  LSWNTRIRMALGAARALEYLHE+CQPP+VHRNFKS NILLDDDL V VSDCG
Sbjct: 508 SDDELKKKLSWNTRIRMALGAARALEYLHEVCQPPVVHRNFKSVNILLDDDLDVRVSDCG 567

Query: 660 LAPLISSGSVSQVSHNLTIMRAGG 683
           LAPLISSGSVSQ+S +L      G
Sbjct: 568 LAPLISSGSVSQLSGHLLTAYGYG 591

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449479018|ref|XP_004155482.1| PREDICTED: LOW QUALITY PROTEIN: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Cucumis sativus]

 Score =  751 bits (1940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/689 (64%), Positives = 527/689 (76%), Gaps = 22/689 (3%)

Query: 1   MGVKRSNIECKNWKIYANFFVGFVLIWAAGFSCAVTNPNDVAAINSLYAALGSPVLPGWV 60
           MG KRS+    N +I+    VGFV + AA     +TNP D +AI+SL+ ALG P LPGW 
Sbjct: 1   MGWKRSS-RNGNLRIWVQVLVGFV-VCAAQVLLGITNPGDFSAISSLHTALGLPSLPGW- 57

Query: 61  ASAGDPCGESWQGVQCNASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIP 120
               DPCG++WQGV CN S II II+N ANLGGELG+NLG FSSI+ IDLSNNHIGGSIP
Sbjct: 58  GIGQDPCGDAWQGVVCNDSSIIRIIINAANLGGELGDNLGLFSSIQTIDLSNNHIGGSIP 117

Query: 121 SILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDL 180
           S LPVT+QNFFLS NQF+GSIPSSL++LT LT MSLN+N LSGEIPD+FQ ++ L+N DL
Sbjct: 118 SNLPVTLQNFFLSANQFTGSIPSSLSSLTQLTAMSLNDNKLSGEIPDSFQVISQLVNFDL 177

Query: 181 SSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLPLRDLNIENNLFSGPIPEKML 240
           S+NNLSG LPPS+ NL  LTTLHLQNNQLSGTLDVLQDLPL+DLNIENNLFSGPIPEK+L
Sbjct: 178 SNNNLSGPLPPSVSNLLALTTLHLQNNQLSGTLDVLQDLPLKDLNIENNLFSGPIPEKVL 237

Query: 241 QIPNFRKDGNPFNSTVAPSRPPTSSVTPPPAPPFF---GPRPVSGSSPVSRTPPSQHTPG 297
            IPNFRKDGNPFNS+V+P+ PP S   P    P     G  PVSG+      P SQ  P 
Sbjct: 238 SIPNFRKDGNPFNSSVSPTSPPVSPSPPSKPAPAPPVSGGPPVSGAP-----PSSQQRPK 292

Query: 298 KQADGPTALEDSNSGKKKSSTTKKIVWISIAGVLLFVILALVFLLFMPRCIKRRGEVDRI 357
           KQADGP+A E+S+SGK K S TK++V I+IA VL F+IL L  +LFMPRC +RR   D +
Sbjct: 293 KQADGPSASEESSSGKNKKS-TKRVVLITIAVVLSFIILVLACVLFMPRCRRRR-RSDSV 350

Query: 358 FKRHQVGAFRGNNREEARDNGTLALPTNQM---EKDASVKPKEDHRSEMRRMGAIPHAQN 414
            KRHQ+GA+RG  RE   + G +    +Q+    K+  V+ K++ ++E+++   +P    
Sbjct: 351 SKRHQIGAYRG-ERENVGNQGAMPQTNDQIPKVPKEPVVRMKQETQTEVQK---VPKDNV 406

Query: 415 EQERNKQRMSTIPRRDDHEIDMSSLDMMMMPPPPPPPPPPPPPPPPPPPPPVVEKVIVKP 474
           E+E+N  RMS IP++D HE+DMS+LD+ +M  PPPPPPPPPPPPPPPPPPP VE+V   P
Sbjct: 407 EREKNMPRMSAIPKKDHHEVDMSTLDVYLM--PPPPPPPPPPPPPPPPPPPPVEEVTAVP 464

Query: 475 IVPAEGTAVKTSTKTAKPFTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGK 534
            VPAE   +K  TK       AR +TIASLQQYTNSFSQENL+G GMLG+VYRA LP GK
Sbjct: 465 TVPAEVPPLKPLTKNKITLPFARPYTIASLQQYTNSFSQENLLGEGMLGNVYRAHLPSGK 524

Query: 535 LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTL 594
           +LAVKKLDKRA S QKDDEFLELVNNIDRIRHAN+VEL GYCAEHG+RLLI+EYCS GTL
Sbjct: 525 VLAVKKLDKRAFSLQKDDEFLELVNNIDRIRHANVVELSGYCAEHGERLLIFEYCSGGTL 584

Query: 595 QDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVS 654
           QD LHSD+E +  LSWN RIRMALGAARALEYLHE+CQPP++HRNFKSANILLDDDL+V 
Sbjct: 585 QDALHSDEEFRKKLSWNARIRMALGAARALEYLHEVCQPPVIHRNFKSANILLDDDLSVR 644

Query: 655 VSDCGLAPLISSGSVSQVSHNLTIMRAGG 683
           VSDCGLAPLIS G+VSQ+S  L      G
Sbjct: 645 VSDCGLAPLISKGAVSQLSGQLLTAYGYG 673

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|304281946|gb|ADM21184.1| strubbelig receptor family 3 [Arabidopsis thaliana]

 Score =  748 bits (1932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/655 (63%), Positives = 494/655 (75%), Gaps = 29/655 (4%)

Query: 26  IWAAGFSCAVTNPNDVAAINSLYAALGSPVLPGWVASAGDPCGESWQGVQCNASDIIAII 85
           IW    S A TNP+DVAAIN L+AALG+PVLPGW+AS GDPCGE+WQG+ CN SDII+I 
Sbjct: 21  IWIPSISLAATNPDDVAAINGLFAALGAPVLPGWIASGGDPCGEAWQGIICNVSDIISIT 80

Query: 86  LNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSL 145
           +N ANL GELG+NL  F+SIR ID SNN IGGSIPS LPVT+Q+FFLS NQF+GSIP SL
Sbjct: 81  VNAANLQGELGDNLAKFTSIRGIDFSNNRIGGSIPSTLPVTLQHFFLSANQFTGSIPESL 140

Query: 146 ATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQ 205
            TL+ L DMSLN+NLLSGE+PD FQ+L GLINLD+SSNN+SG LPPS+ENL  LTTL +Q
Sbjct: 141 GTLSFLNDMSLNDNLLSGELPDVFQNLVGLINLDISSNNISGTLPPSMENLLTLTTLRVQ 200

Query: 206 NNQLSGTLDVLQDLPLRDLNIENNLFSGPIPEKMLQIPNFRKDGNPFNSTVAPSRPPTSS 265
           NNQLSGTLDVLQ LPL+DLNIENNLFSGPIP+K+L IP F  +GNPFN+T   S     S
Sbjct: 201 NNQLSGTLDVLQGLPLQDLNIENNLFSGPIPDKLLSIPKFLHEGNPFNATTINSTSTAPS 260

Query: 266 VTPPPAPPFFGP-RPVSGSSPVSRTPPSQHTPGKQADGPTALEDS---NSGKKKSSTTKK 321
           ++P  +P    P RP SG  P    PP++   GK ADGP+  E S   NS  K SS TKK
Sbjct: 261 LSPSLSPTKPAPTRPFSGVPP----PPNERNRGKVADGPSDSEGSSSENSKGKNSSHTKK 316

Query: 322 IVWISIAGVLLFVILALVFLLFMPRCIKRRGEVDRIFKRHQVGAFRGNNREEARDNGTLA 381
           I+ I+ AGVL+F+IL L  LL +P+C +RR   +R+FK HQVGA RG +RE A +NGT  
Sbjct: 317 IILIAFAGVLVFIILVLAILLLLPKCARRREHANRVFKPHQVGADRG-SRENALENGTPV 375

Query: 382 LPTNQMEKDASVKPKEDHRSEMRRMGAIPHAQNEQERNKQRMSTIPRRDDHEIDMSSLDM 441
           LP          + ++  R   +++G  P   ++ ER + R + I R++  +ID S   M
Sbjct: 376 LP-------PPGRSEKVQREPFKKVGEEPKVLHDLERLR-RPAPISRQESQDIDFS---M 424

Query: 442 MMMPPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTTARSFTI 501
           +M         PPPPPPPPPPPPP+ EKV V PI+  E    KTS K   P T+ + ++I
Sbjct: 425 LMP--------PPPPPPPPPPPPPLDEKVAVMPIISPERPVKKTSPKRL-PLTSVKHYSI 475

Query: 502 ASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNI 561
           ASLQQYT SF+QENLIG+GMLGSVYRA+LP+GKL AVKKLDKRAS QQ+D EF+ELVNNI
Sbjct: 476 ASLQQYTESFAQENLIGSGMLGSVYRARLPNGKLFAVKKLDKRASEQQQDHEFIELVNNI 535

Query: 562 DRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAA 621
           D IRH+NIVEL GYCAEH QRLL+YEYCSNGTLQD LHSDDE K  LSWNTR+ MALGAA
Sbjct: 536 DMIRHSNIVELVGYCAEHDQRLLVYEYCSNGTLQDGLHSDDEFKKKLSWNTRVSMALGAA 595

Query: 622 RALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSHNL 676
           RALEYLHE+C+PPI+HRNFKSAN+LLDDDL+V VSDCGLAPLISSGSVSQ+S  L
Sbjct: 596 RALEYLHEVCEPPIIHRNFKSANVLLDDDLSVLVSDCGLAPLISSGSVSQLSGQL 650

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42566272|ref|NP_192248.2| STRUBBELIG-receptor family 3 [Arabidopsis thaliana] gi|75127761|sp|Q6R2K3.1|SRF3_ARATH RecName: Full=Protein STRUBBELIG-RECEPTOR FAMILY 3; AltName: Full=Leucine-rich repeat receptor kinase-like protein SRF3; Flags: Precursor gi|41323405|gb|AAR99871.1| strubbelig receptor family 3 [Arabidopsis thaliana] gi|224589608|gb|ACN59337.1| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gi|332656913|gb|AEE82313.1| STRUBBELIG-receptor family 3 [Arabidopsis thaliana]

 Score =  748 bits (1932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/655 (63%), Positives = 494/655 (75%), Gaps = 29/655 (4%)

Query: 26  IWAAGFSCAVTNPNDVAAINSLYAALGSPVLPGWVASAGDPCGESWQGVQCNASDIIAII 85
           IW    S A TNP+DVAAIN L+AALG+PVLPGW+AS GDPCGE+WQG+ CN SDII+I 
Sbjct: 21  IWIPSISLAATNPDDVAAINGLFAALGAPVLPGWIASGGDPCGEAWQGIICNVSDIISIT 80

Query: 86  LNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSL 145
           +N ANL GELG+NL  F+SIR ID SNN IGGSIPS LPVT+Q+FFLS NQF+GSIP SL
Sbjct: 81  VNAANLQGELGDNLAKFTSIRGIDFSNNRIGGSIPSTLPVTLQHFFLSANQFTGSIPESL 140

Query: 146 ATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQ 205
            TL+ L DMSLN+NLLSGE+PD FQ+L GLINLD+SSNN+SG LPPS+ENL  LTTL +Q
Sbjct: 141 GTLSFLNDMSLNDNLLSGELPDVFQNLVGLINLDISSNNISGTLPPSMENLLTLTTLRVQ 200

Query: 206 NNQLSGTLDVLQDLPLRDLNIENNLFSGPIPEKMLQIPNFRKDGNPFNSTVAPSRPPTSS 265
           NNQLSGTLDVLQ LPL+DLNIENNLFSGPIP+K+L IP F  +GNPFN+T+  S     S
Sbjct: 201 NNQLSGTLDVLQGLPLQDLNIENNLFSGPIPDKLLSIPKFLHEGNPFNATMINSTSTAPS 260

Query: 266 VTPPPAPPFFGP-RPVSGSSPVSRTPPSQHTPGKQADGPTALEDS---NSGKKKSSTTKK 321
           ++P  +P    P RP SG  P    PP++   GK ADGP+  E S   NS  K SS TKK
Sbjct: 261 LSPSLSPTKPAPTRPFSGVPP----PPNERNRGKVADGPSDSEGSSSENSKGKNSSHTKK 316

Query: 322 IVWISIAGVLLFVILALVFLLFMPRCIKRRGEVDRIFKRHQVGAFRGNNREEARDNGTLA 381
           I+ I+ AGVL+F+IL L  LL +P+C +RR   +R+FK HQVGA RG +RE A +NGT  
Sbjct: 317 IILIAFAGVLVFIILVLAILLLLPKCARRREHANRVFKPHQVGADRG-SRENALENGTPV 375

Query: 382 LPTNQMEKDASVKPKEDHRSEMRRMGAIPHAQNEQERNKQRMSTIPRRDDHEIDMSSLDM 441
           LP          + ++  R   ++ G  P   ++ ER + R + I R++  +ID S   M
Sbjct: 376 LP-------PPGRSEKVQREPFKKAGEEPKVLHDLERLR-RPAPISRQESQDIDFS---M 424

Query: 442 MMMPPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTTARSFTI 501
           +M         PPPPPPPPPPPPP+ EKV V PI+  E    KTS K   P T+ + ++I
Sbjct: 425 LMP--------PPPPPPPPPPPPPLDEKVTVMPIISPERPVKKTSPKRL-PLTSVKHYSI 475

Query: 502 ASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNI 561
           ASLQQYT SF+QENLIG+GMLGSVYRA+LP+GKL AVKKLDKRAS QQ+D EF+ELVNNI
Sbjct: 476 ASLQQYTESFAQENLIGSGMLGSVYRARLPNGKLFAVKKLDKRASEQQQDHEFIELVNNI 535

Query: 562 DRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAA 621
           D IRH+NIVEL GYCAEH QRLL+YEYCSNGTLQD LHSDDE K  LSWNTR+ MALGAA
Sbjct: 536 DMIRHSNIVELVGYCAEHDQRLLVYEYCSNGTLQDGLHSDDEFKKKLSWNTRVSMALGAA 595

Query: 622 RALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSHNL 676
           RALEYLHE+C+PPI+HRNFKSAN+LLDDDL+V VSDCGLAPLISSGSVSQ+S  L
Sbjct: 596 RALEYLHEVCEPPIIHRNFKSANVLLDDDLSVLVSDCGLAPLISSGSVSQLSGQL 650

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|304281933|gb|ADM21173.1| SRF3 [Arabidopsis thaliana]

 Score =  748 bits (1932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/655 (63%), Positives = 493/655 (75%), Gaps = 29/655 (4%)

Query: 26  IWAAGFSCAVTNPNDVAAINSLYAALGSPVLPGWVASAGDPCGESWQGVQCNASDIIAII 85
           IW    S A TNP+DVAAIN L+AALG+PVLPGW+AS GDPCGE+WQG+ CN SDII+I 
Sbjct: 21  IWIPSISLAATNPDDVAAINGLFAALGAPVLPGWIASGGDPCGEAWQGIICNVSDIISIT 80

Query: 86  LNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSL 145
           +N ANL GELG+NL  F+SIR ID SNN IGGSIPS LPVT+Q+FFLS NQF+GSIP SL
Sbjct: 81  VNAANLQGELGDNLAKFTSIRGIDFSNNRIGGSIPSTLPVTLQHFFLSANQFTGSIPESL 140

Query: 146 ATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQ 205
            TL+ L DMSLN+NLLSGE+PD FQ+L GLINLD+SSNN+SG LPPS+ENL  LTTL +Q
Sbjct: 141 GTLSFLNDMSLNDNLLSGELPDVFQNLVGLINLDISSNNISGTLPPSMENLLTLTTLRVQ 200

Query: 206 NNQLSGTLDVLQDLPLRDLNIENNLFSGPIPEKMLQIPNFRKDGNPFNSTVAPSRPPTSS 265
           NNQLSGTLDVLQ LPL+DLNIENNLFSGPIP+K+L IP F  +GNPFN+T   S     S
Sbjct: 201 NNQLSGTLDVLQGLPLQDLNIENNLFSGPIPDKLLSIPKFLHEGNPFNATTINSTSTAPS 260

Query: 266 VTPPPAPPFFGP-RPVSGSSPVSRTPPSQHTPGKQADGPTALEDS---NSGKKKSSTTKK 321
           ++P  +P    P RP SG  P    PP++   GK ADGP+  E S   NS  K SS TKK
Sbjct: 261 LSPSLSPTKPAPTRPFSGVPP----PPNERNRGKVADGPSDSEGSSSENSKGKNSSHTKK 316

Query: 322 IVWISIAGVLLFVILALVFLLFMPRCIKRRGEVDRIFKRHQVGAFRGNNREEARDNGTLA 381
           I+ I+ AGVL+F+IL L  LL +P+C +RR   +R+FK HQVGA RG +RE A +NGT  
Sbjct: 317 IILIAFAGVLVFIILVLAILLLLPKCARRREHANRVFKPHQVGADRG-SRENALENGTPV 375

Query: 382 LPTNQMEKDASVKPKEDHRSEMRRMGAIPHAQNEQERNKQRMSTIPRRDDHEIDMSSLDM 441
           LP          + ++  R   ++ G  P   ++ ER + R + I R++  +ID S   M
Sbjct: 376 LP-------PPGRSEKVQREPFKKAGEEPKVLHDLERLR-RPAPISRQESQDIDFS---M 424

Query: 442 MMMPPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTTARSFTI 501
           +M         PPPPPPPPPPPPP+ EKV V PI+  E    KTS K   P T+ + ++I
Sbjct: 425 LMP--------PPPPPPPPPPPPPLDEKVTVMPIISPERPVKKTSPKRL-PLTSVKHYSI 475

Query: 502 ASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNI 561
           ASLQQYT SF+QENLIG+GMLGSVYRA+LP+GKL AVKKLDKRAS QQ+D EF+ELVNNI
Sbjct: 476 ASLQQYTESFAQENLIGSGMLGSVYRARLPNGKLFAVKKLDKRASEQQQDHEFIELVNNI 535

Query: 562 DRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAA 621
           D IRH+NIVEL GYCAEH QRLL+YEYCSNGTLQD LHSDDE K  LSWNTR+ MALGAA
Sbjct: 536 DMIRHSNIVELVGYCAEHDQRLLVYEYCSNGTLQDGLHSDDEFKKKLSWNTRVSMALGAA 595

Query: 622 RALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSHNL 676
           RALEYLHE+C+PPI+HRNFKSAN+LLDDDL+V VSDCGLAPLISSGSVSQ+S  L
Sbjct: 596 RALEYLHEVCEPPIIHRNFKSANVLLDDDLSVLVSDCGLAPLISSGSVSQLSGQL 650

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124596|ref|XP_002319371.1| predicted protein [Populus trichocarpa] gi|222857747|gb|EEE95294.1| predicted protein [Populus trichocarpa]

 Score =  747 bits (1928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/635 (67%), Positives = 486/635 (76%), Gaps = 46/635 (7%)

Query: 41  VAAINSLYAALGSPVLPGWVASAGDPCGESWQGVQCNASDIIAIILNGANLGGELGENLG 100
           V AINSLY +LGSPVLPGWV + GDPCGE WQG+ CN S+I +I+LNGANLGGELG+NLG
Sbjct: 1   VTAINSLYISLGSPVLPGWVGTGGDPCGEGWQGIVCNVSEIQSIVLNGANLGGELGDNLG 60

Query: 101 AFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNL 160
            F+SI  I LSNNHIGGSIPS LPVTMQN FLSDN F+GSIP SL+TLTLL  MSLN+N 
Sbjct: 61  MFASIISIGLSNNHIGGSIPSNLPVTMQNLFLSDNNFTGSIPDSLSTLTLLKAMSLNDNF 120

Query: 161 LSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP 220
           LSGEIPDAFQ+L GLINLDLS+NNLSG+LP S  +L+ LTTL LQ+NQLSGTLDVLQDLP
Sbjct: 121 LSGEIPDAFQALPGLINLDLSNNNLSGQLPSSFIDLASLTTLRLQDNQLSGTLDVLQDLP 180

Query: 221 LRDLNIENNLFSGPIPEKMLQIPNFRKDGNPFNSTVAPSRPPTSSVTPPPAPPFFGPRPV 280
           LRDLN+ENNLFSGPIP+K+L IPNFR DGNPFN++ AP   PTS    PP P      P+
Sbjct: 181 LRDLNVENNLFSGPIPDKLLAIPNFRNDGNPFNTSSAPLPAPTSPSPSPPTP----TPPL 236

Query: 281 SGSSPVSRTPPSQHTPGKQADGPTALEDSNSGKKKSSTTKKIVWISIAGVLLFVILALVF 340
           SG+ P   +P S+ TPGKQAD P++    +         K++VWISIAGVLLFVILAL  
Sbjct: 237 SGAPP---SPSSRRTPGKQADAPSS----SEKSSSGGKNKRVVWISIAGVLLFVILALAL 289

Query: 341 LLFMPRCIKRRGEVDRIFKRHQVGAFRGNNREEARDNGTLALPTNQMEKDASVKPKEDHR 400
           +L +PRC +RR E  RIFKRHQVG       E  RDNG+L                 DH 
Sbjct: 290 VLLIPRCSRRRWEDSRIFKRHQVG-------ENPRDNGSL-----------------DH- 324

Query: 401 SEMRRMGAIPHAQNEQERNKQRMSTIPRRDDHEIDMSSLDM-MMMPPPPPPPPPPPPPPP 459
                    P  QN   RN+ +M+  P RD+H + +   D+  M P   PPPPPPPPPPP
Sbjct: 325 ---------PKPQNMHMRNEPKMNPAPNRDNHLMAIGRADLDFMAPLSSPPPPPPPPPPP 375

Query: 460 PPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTTARSFTIASLQQYTNSFSQENLIGA 519
           PPPPPP VE VIVKPIVPAE ++ K S KT  P T+ARSF IASLQQYT+SFSQENLIG 
Sbjct: 376 PPPPPPPVENVIVKPIVPAEVSSGKPSRKTQIPLTSARSFNIASLQQYTSSFSQENLIGG 435

Query: 520 GMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEH 579
           GMLGSVYRAQLP+GKLLAVKKLDKR + QQKD EF+ELVNNIDRIRHAN+VEL GYCAEH
Sbjct: 436 GMLGSVYRAQLPNGKLLAVKKLDKRTAEQQKDVEFIELVNNIDRIRHANVVELMGYCAEH 495

Query: 580 GQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRN 639
           GQRLLIYEYCSNG+LQD LHSDDE K  LSWN RI+MAL AARALEYLHE+CQPP++HRN
Sbjct: 496 GQRLLIYEYCSNGSLQDALHSDDEFKKKLSWNARIKMALEAARALEYLHEVCQPPVIHRN 555

Query: 640 FKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSH 674
           FKSAN+LLDDDL V VSDCGLA LISSGSVSQV++
Sbjct: 556 FKSANVLLDDDLDVRVSDCGLASLISSGSVSQVTY 590

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|304281935|gb|ADM21174.1| SRF3 [Arabidopsis thaliana]

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/655 (63%), Positives = 492/655 (75%), Gaps = 29/655 (4%)

Query: 26  IWAAGFSCAVTNPNDVAAINSLYAALGSPVLPGWVASAGDPCGESWQGVQCNASDIIAII 85
           IW    S A TNP+DVAAIN L+AALG+PVLPGW+AS GDPCGE+WQG+ CN SDII+I 
Sbjct: 21  IWIPSISLAATNPDDVAAINGLFAALGAPVLPGWIASGGDPCGEAWQGIICNVSDIISIT 80

Query: 86  LNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSL 145
           +N ANL GELG+NL  F+SIR ID SNN IGGSIPS LPVT+Q+FFLS NQF+GSIP SL
Sbjct: 81  VNAANLQGELGDNLAKFTSIRGIDFSNNRIGGSIPSTLPVTLQHFFLSANQFTGSIPESL 140

Query: 146 ATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQ 205
            TL+ L DMSLN+NLLSGE+PD FQ+L GLINLD+SSNN+SG LPPS+ENL  LTTL +Q
Sbjct: 141 GTLSFLNDMSLNDNLLSGELPDVFQNLVGLINLDISSNNISGTLPPSMENLLTLTTLRVQ 200

Query: 206 NNQLSGTLDVLQDLPLRDLNIENNLFSGPIPEKMLQIPNFRKDGNPFNSTVAPSRPPTSS 265
           NNQLSGTLDVLQ LPL+DLNIENNLFSGPIP+K+L IP F  +GN FN+T   S     S
Sbjct: 201 NNQLSGTLDVLQGLPLQDLNIENNLFSGPIPDKLLSIPKFLHEGNLFNATTINSTSTAPS 260

Query: 266 VTPPPAPPFFGP-RPVSGSSPVSRTPPSQHTPGKQADGPTALEDS---NSGKKKSSTTKK 321
           ++P  +P    P RP SG  P    PP++   GK ADGP+  E S   NS  K SS TKK
Sbjct: 261 LSPSLSPTKPAPTRPFSGVPP----PPNERNRGKVADGPSDSEGSSSENSKGKNSSHTKK 316

Query: 322 IVWISIAGVLLFVILALVFLLFMPRCIKRRGEVDRIFKRHQVGAFRGNNREEARDNGTLA 381
           I+ I+ AGVL+F+IL L  LL +P+C +RR   +R+FK HQVGA RG +RE A +NGT  
Sbjct: 317 IILIAFAGVLVFIILVLAILLLLPKCARRREHANRVFKPHQVGADRG-SRENALENGTPV 375

Query: 382 LPTNQMEKDASVKPKEDHRSEMRRMGAIPHAQNEQERNKQRMSTIPRRDDHEIDMSSLDM 441
           LP          + ++  R   ++ G  P   ++ ER + R + I R++  +ID S   M
Sbjct: 376 LP-------PPGRSEKVQREPFKKAGEEPKVLHDLERLR-RPAPISRQESQDIDFS---M 424

Query: 442 MMMPPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTTARSFTI 501
           +M         PPPPPPPPPPPPP+ EKV V PI+  E    KTS K   P T+ + ++I
Sbjct: 425 LMP--------PPPPPPPPPPPPPLDEKVTVMPIISPERPVKKTSPKRL-PLTSVKHYSI 475

Query: 502 ASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNI 561
           ASLQQYT SF+QENLIG+GMLGSVYRA+LP+GKL AVKKLDKRAS QQ+D EF+ELVNNI
Sbjct: 476 ASLQQYTESFAQENLIGSGMLGSVYRARLPNGKLFAVKKLDKRASEQQQDHEFIELVNNI 535

Query: 562 DRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAA 621
           D IRH+NIVEL GYCAEH QRLL+YEYCSNGTLQD LHSDDE K  LSWNTR+ MALGAA
Sbjct: 536 DMIRHSNIVELVGYCAEHDQRLLVYEYCSNGTLQDGLHSDDEFKKKLSWNTRVSMALGAA 595

Query: 622 RALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSHNL 676
           RALEYLHE+C+PPI+HRNFKSAN+LLDDDL+V VSDCGLAPLISSGSVSQ+S  L
Sbjct: 596 RALEYLHEVCEPPIIHRNFKSANVLLDDDLSVLVSDCGLAPLISSGSVSQLSGQL 650

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	689
TAIR|locus:2125566	776	SRF3 "STRUBBELIG-receptor fami	0.278	0.247	0.756	4.1e-165
TAIR|locus:2051404	775	SRF1 "STRUBBELIG-receptor fami	0.477	0.424	0.467	3.3e-145
TAIR|locus:2202084	768	SUB "STRUBBELIG" [Arabidopsis	0.345	0.309	0.473	5.7e-107
TAIR|locus:2120683	703	SRF8 "STRUBBELIG-receptor fami	0.258	0.253	0.581	1.9e-87
TAIR|locus:2024837	720	SRF6 "STRUBBELIG-receptor fami	0.268	0.256	0.481	3.4e-77
TAIR|locus:2091015	717	SRF7 "STRUBBELIG-receptor fami	0.253	0.244	0.485	3.2e-75
TAIR|locus:2207280	699	SRF5 "STRUBBELIG-receptor fami	0.249	0.246	0.462	2.4e-71
TAIR|locus:2089210	687	SRF4 "STRUBBELIG-receptor fami	0.262	0.263	0.434	6.1e-71
TAIR|locus:2170219	735	SRF2 "STRUBBELIG-receptor fami	0.285	0.268	0.407	1.9e-66
TAIR|locus:2157042	953	AT5G49760 [Arabidopsis thalian	0.252	0.182	0.376	7e-45

TAIR|locus:2125566 SRF3 "STRUBBELIG-receptor family 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 759 (272.2 bits), Expect = 4.1e-165, Sum P(3) = 4.1e-165
 Identities = 146/193 (75%), Positives = 165/193 (85%)

Query:   484 KTSTKTAKPFTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDK 543
             KTS K   P T+ + ++IASLQQYT SF+QENLIG+GMLGSVYRA+LP+GKL AVKKLDK
Sbjct:   459 KTSPKRL-PLTSVKHYSIASLQQYTESFAQENLIGSGMLGSVYRARLPNGKLFAVKKLDK 517

Query:   544 RASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDE 603
             RAS QQ+D EF+ELVNNID IRH+NIVEL GYCAEH QRLL+YEYCSNGTLQD LHSDDE
Sbjct:   518 RASEQQQDHEFIELVNNIDMIRHSNIVELVGYCAEHDQRLLVYEYCSNGTLQDGLHSDDE 577

Query:   604 LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPL 663
              K  LSWNTR+ MALGAARALEYLHE+C+PPI+HRNFKSAN+      +V VSDCGLAPL
Sbjct:   578 FKKKLSWNTRVSMALGAARALEYLHEVCEPPIIHRNFKSANVLLDDDLSVLVSDCGLAPL 637

Query:   664 ISSGSVSQVSHNL 676
             ISSGSVSQ+S  L
Sbjct:   638 ISSGSVSQLSGQL 650

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IEP

TAIR|locus:2051404 SRF1 "STRUBBELIG-receptor family 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 773 (277.2 bits), Expect = 3.3e-145, Sum P(2) = 3.3e-145
 Identities = 166/355 (46%), Positives = 218/355 (61%)

Query:   322 IVWISIAGXXXXXXXXXXXXXXMPRCIKRRGEVDRIFKRHQVGAFRGNNREEARDNGTLA 381
             I+WISI G                +C+++R + +++ K H    + G  RE +R N ++ 
Sbjct:   315 IIWISILGAFSFVVLALVCLLCGRKCLRKREDSEQLSKPHLTSEY-GRAREGSRSNASML 373

Query:   382 LPTNQMEKDASVKPKEDHRSEMRRMGAIPHAQNEQERNKQRMSTIPRRDDHEIDMSSLDM 441
              P+N   KD   +PKE       R+G         ER+   + +  +++ HEIDM+   M
Sbjct:   374 PPSNTFNKDKEARPKE-------RVGGASKLHGGAERS---VGSESKQESHEIDMNGNAM 423

Query:   442 MMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEGTAVKTSTKTAKPFTTARSFTI 501
              +M                                 AE +  +T++K+  P T  + FT+
Sbjct:   424 DLMHPSSIPPIKRVIAKATEP---------------AEASLKRTTSKSHGPLTAVKHFTV 468

Query:   502 ASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNI 561
             ASLQQ+TNSFS ENLIG GMLGSVYRA+LP GKL AV+KLDK++ + +++ +FLELVNNI
Sbjct:   469 ASLQQHTNSFSHENLIGTGMLGSVYRAELPGGKLFAVRKLDKKSPNHEEEGKFLELVNNI 528

Query:   562 DRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAA 621
             DRIRHANIV+L G+C+EH QRLLI+EYC NGTL D+LH DD LK  LSWN R+R+AL AA
Sbjct:   529 DRIRHANIVQLVGFCSEHSQRLLIHEYCRNGTLHDLLHIDDRLKIELSWNVRVRIALEAA 588

Query:   622 RALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQVSHNL 676
             +ALEYLHEIC PP +HRNFKSANI       V VSDCGLAPLISSG+VSQ+S  L
Sbjct:   589 KALEYLHEICDPPSIHRNFKSANILLDDDIRVHVSDCGLAPLISSGAVSQLSGQL 643

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2202084 SUB "STRUBBELIG" [Arabidopsis thaliana (taxid:3702)]

 Score = 549 (198.3 bits), Expect = 5.7e-107, Sum P(2) = 5.7e-107
 Identities = 114/241 (47%), Positives = 148/241 (61%)

Query:    13 WKIYANFFVGFVLIWAAGFSCAVTNPNDVAAINSLYAALGSPVLPGWVASAGDPCGESWQ 72
             W++   FF   VL     FS  VTN  DV+AIN+LY  LG+P L  W+A  GDPCGE WQ
Sbjct:     6 WEV---FFGLSVLALTMPFSAGVTNLRDVSAINNLYITLGAPSLHHWLAFGGDPCGEKWQ 62

Query:    73 GVQCNASDIIAIIXXXXXXXXXXXXXXXXFSSIRVIDLSNNHIGGSIPSILPVTMQNFFL 132
             GV C++S+I  I                 FSSI+V+D S+NHI G+IP  LP +++N  L
Sbjct:    63 GVVCDSSNITEIRIPGMKVGGGLSDTLADFSSIQVMDFSSNHISGTIPQALPSSIRNLSL 122

Query:   133 SDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLIXXXXXXXXXXGELPPS 192
             S N+F+G+IP +L+ L+ L+++SL +NLLSGEIPD FQ L+ L           G LP S
Sbjct:   123 SSNRFTGNIPFTLSFLSDLSELSLGSNLLSGEIPDYFQQLSKLTKLDLSSNILEGHLPSS 182

Query:   193 LEXXXXXXXXXXXXXXXXGTLDVLQDLPLRDLNIENNLFSGPIPEKMLQIPNFRKDGNPF 252
             +                 GTLDV++DL L DLN+ENNLFSGPIP  +L+IPNF+KDG PF
Sbjct:   183 MGDLASLKILYLQDNKLTGTLDVIEDLFLTDLNVENNLFSGPIPPNLLKIPNFKKDGTPF 242

Query:   253 N 253
             N
Sbjct:   243 N 243

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0007165 "signal transduction" evidence=IC

GO:0004702 "receptor signaling protein serine/threonine kinase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0010059 "positive regulation of atrichoblast fate specification" evidence=IMP

GO:0010063 "positive regulation of trichoblast fate specification" evidence=IMP

GO:0048437 "floral organ development" evidence=IEP;IMP

GO:0048481 "ovule development" evidence=IMP

GO:0000902 "cell morphogenesis" evidence=IEP;IMP

GO:0010071 "root meristem specification" evidence=IMP

GO:0048367 "shoot system development" evidence=TAS

GO:0009506 "plasmodesma" evidence=IDA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

TAIR|locus:2120683 SRF8 "STRUBBELIG-receptor family 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 548 (198.0 bits), Expect = 1.9e-87, Sum P(2) = 1.9e-87
 Identities = 104/179 (58%), Positives = 132/179 (73%)

Query:   495 TARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEF 554
             TA  +T++SLQ  TNSFSQEN+IG G LG VYRA+ P+GK++A+KK+D  A S Q++D F
Sbjct:   379 TASQYTVSSLQVATNSFSQENIIGEGSLGRVYRAEFPNGKIMAIKKIDNAALSLQEEDNF 438

Query:   555 LELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRI 614
             LE V+N+ R+RH NIV L GYC EHGQRLL+YEY  NG L D LH++D+   NL+WN R+
Sbjct:   439 LEAVSNMSRLRHPNIVPLAGYCTEHGQRLLVYEYVGNGNLDDTLHTNDDRSMNLTWNARV 498

Query:   615 RMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQVS 673
             ++ALG A+ALEYLHE+C P IVHRNFKSANI         +SD GLA L +  +  QVS
Sbjct:   499 KVALGTAKALEYLHEVCLPSIVHRNFKSANILLDEELNPHLSDSGLAAL-TPNTERQVS 556

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009624 "response to nematode" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2024837 SRF6 "STRUBBELIG-receptor family 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 3.4e-77, Sum P(2) = 3.4e-77
 Identities = 90/187 (48%), Positives = 121/187 (64%)

Query:   482 AVKTSTKTAKPFTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKL 541
             AVK ST    P +  R +++A LQ  T SFS +NL+G G  G VYRA+  DGK+LAVKK+
Sbjct:   389 AVKKSTVVV-P-SNVRLYSVADLQIATGSFSVDNLLGEGTFGRVYRAEFDDGKVLAVKKI 446

Query:   542 DKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSD 601
             D  A      D+F+E+V+ I  + H N+ +L GYCAEHGQ L++YE+  NG+L D LH  
Sbjct:   447 DSSALPHGMTDDFIEMVSKIANLDHPNVTKLVGYCAEHGQHLVVYEFHKNGSLHDFLHLS 506

Query:   602 DELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
             +E    L WN+R+++ALG ARALEYLHE+C P IV +N KSANI         +SD GLA
Sbjct:   507 EEESKALVWNSRVKIALGTARALEYLHEVCSPSIVDKNIKSANILLDSELNPHLSDSGLA 566

Query:   662 PLISSGS 668
               + + +
Sbjct:   567 SFLPTAN 573

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2091015 SRF7 "STRUBBELIG-receptor family 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 3.2e-75, Sum P(2) = 3.2e-75
 Identities = 85/175 (48%), Positives = 115/175 (65%)

Query:   494 TTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDE 553
             +   ++T++ LQ  TNSFS +NL+G G  G VYRAQ  DGK+LAVKK+D  A      D+
Sbjct:   402 SNVNTYTVSDLQVATNSFSVDNLLGEGTFGRVYRAQFEDGKVLAVKKIDSSALPTDTADD 461

Query:   554 FLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTR 613
             F E+V+ I  + H N+ +L GYC+EHGQ L++YE+  NG+L D LH  +E    L WN R
Sbjct:   462 FTEIVSKIAHLDHENVTKLDGYCSEHGQHLVVYEFHRNGSLHDFLHLAEEESKPLIWNPR 521

Query:   614 IRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGS 668
             +++ALG ARALEYLHE+C P IVH+N KSANI         +SD GLA  + + +
Sbjct:   522 VKIALGTARALEYLHEVCSPSIVHKNIKSANILLDSELNPHLSDSGLASFLPTAN 576

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2207280 SRF5 "STRUBBELIG-receptor family 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 2.4e-71, Sum P(2) = 2.4e-71
 Identities = 81/175 (46%), Positives = 110/175 (62%)

Query:   490 AKPFTTARS---FTIASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRAS 546
             AK  T+ RS   F ++ LQ  T +FS  NL+G G +G VYRA+  DG+ LAVKK+D    
Sbjct:   380 AKRTTSTRSAVEFELSDLQSATANFSPGNLLGEGSIGRVYRAKYSDGRTLAVKKIDSTLF 439

Query:   547 SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKN 606
                K +    +V ++ +IRH NI EL GYC+E G  +L+YEY  NG+L + LH  D    
Sbjct:   440 DSGKSEGITPIVMSLSKIRHQNIAELVGYCSEQGHNMLVYEYFRNGSLHEFLHLSDCFSK 499

Query:   607 NLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
              L+WNTR+R+ALG ARA+EYLHE C P ++H+N KS+NI         +SD GL+
Sbjct:   500 PLTWNTRVRIALGTARAVEYLHEACSPSVMHKNIKSSNILLDADLNPRLSDYGLS 554

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2089210 SRF4 "STRUBBELIG-receptor family 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 417 (151.9 bits), Expect = 6.1e-71, Sum P(2) = 6.1e-71
 Identities = 79/182 (43%), Positives = 115/182 (63%)

Query:   481 TAVKTSTKTAKPFTTA-RSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVK 539
             T  ++ST    P T   ++F++A LQ   + FS   L+G G +G VY+A+  DG+  AVK
Sbjct:   384 TPDRSSTSQDSPDTRGVKAFSLADLQNTASCFSPNRLLGEGTIGRVYKAKFQDGRKFAVK 443

Query:   540 KLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLH 599
             ++D     +   +EF  +V++I  I H N+ EL GYC+E G+ +L+YEY ++G+L   LH
Sbjct:   444 EIDSSLLGKGNPEEFSHIVSSISSIHHKNMAELVGYCSEQGRNMLVYEYFTSGSLHRFLH 503

Query:   600 SDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCG 659
               D+    L+WNTRIR+ALG A+A+EYLHE C PP+VH+N KS+NI         +SD G
Sbjct:   504 LSDDFSKPLTWNTRIRIALGTAKAIEYLHETCSPPLVHKNIKSSNILLDNELNPRLSDYG 563

Query:   660 LA 661
             LA
Sbjct:   564 LA 565

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2170219 SRF2 "STRUBBELIG-receptor family 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 1.9e-66, Sum P(2) = 1.9e-66
 Identities = 82/201 (40%), Positives = 124/201 (61%)

Query:   484 KTSTKTAKPFTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDK 543
             K+ + T +  + A+ F+ A LQ  TN FS+ENL+G G LGSVYRA+LPDG+   V+ +  
Sbjct:   388 KSFSATCQYPSFAKLFSAAELQLATNCFSEENLLGEGPLGSVYRAKLPDGQFAVVRNIPM 447

Query:   544 RASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDE 603
              + S  ++++F E++    ++RH NIV L G+C E+G+ LL+YEY  + +L + +H  DE
Sbjct:   448 SSLSLHEEEQFTEVLQTASKLRHPNIVTLLGFCIENGEHLLVYEYVGHLSLYNAMH--DE 505

Query:   604 LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPL 663
             +   LSW  R+R+A+G ARAL+YLH    PPI H + K+ NI         ++DCGLA L
Sbjct:   506 VYKPLSWGLRLRIAIGVARALDYLHSSFCPPIAHSDLKATNILLDEELTPRIADCGLASL 565

Query:   664 --ISSGSVSQVSHNLTIMRAG 682
               ++S SV   +  + I   G
Sbjct:   566 RPLTSNSVKLRASEIAIQNTG 586

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2157042 AT5G49760 [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 7.0e-45, Sum P(2) = 7.0e-45
 Identities = 67/178 (37%), Positives = 108/178 (60%)

Query:   496 ARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFL 555
             A++FT   L++ T++FS+ N +G G  G VYR  LP+G+L+A+K+  +   S Q   EF 
Sbjct:   616 AKAFTFEELKKCTDNFSEANDVGGGGYGKVYRGILPNGQLIAIKRAQQ--GSLQGGLEFK 673

Query:   556 ELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIR 615
               +  + R+ H N+V L G+C +  +++L+YEY SNG+L+D L     ++  L W  R++
Sbjct:   674 TEIELLSRVHHKNVVRLLGFCFDRNEQMLVYEYISNGSLKDSLSGKSGIR--LDWTRRLK 731

Query:   616 MALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQVS 673
             +ALG+ + L YLHE+  PPI+HR+ KS NI         V+D GL+ L+     + V+
Sbjct:   732 IALGSGKGLAYLHELADPPIIHRDIKSNNILLDENLTAKVADFGLSKLVGDPEKTHVT 789

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0044242 "cellular lipid catabolic process" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6R2K3	SRF3_ARATH	No assigned EC number	0.6351	0.9085	0.8067	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00026005001 SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (749 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	689
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	7e-31
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	4e-29
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	2e-27
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	2e-27
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	8e-27
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	2e-26
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-24
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	5e-24
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-22
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	6e-21
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	1e-20
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-20
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-18
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	6e-18
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-17
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	6e-17
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	6e-17
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	3e-16
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	3e-16
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	5e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-15
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	3e-15
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	7e-15
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	1e-14
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	1e-14
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	2e-14
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	2e-14
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	4e-14
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	7e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-13
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	2e-13
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	2e-13
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	3e-13
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	5e-13
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	6e-13
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	6e-13
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	1e-12
cd05042	269	cd05042, PTKc_Aatyk, Catalytic domain of the Prote	1e-12
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	2e-12
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	2e-12
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	3e-12
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	3e-12
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	3e-12
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	4e-12
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	7e-12
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	1e-11
cd05086	268	cd05086, PTKc_Aatyk2, Catalytic domain of the Prot	1e-11
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	2e-11
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	2e-11
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	3e-11
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	5e-11
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	6e-11
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	7e-11
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	8e-11
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	9e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-10
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	1e-10
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	2e-10
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	2e-10
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	4e-10
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	4e-10
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	5e-10
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	5e-10
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	5e-10
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	5e-10
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	6e-10
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	6e-10
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	6e-10
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	7e-10
cd06646	267	cd06646, STKc_MAP4K5, Catalytic domain of the Prot	8e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	1e-09
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	1e-09
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	1e-09
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	1e-09
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	1e-09
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	1e-09
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	2e-09
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	2e-09
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	2e-09
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	2e-09
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	3e-09
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	4e-09
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	4e-09
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	5e-09
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	6e-09
cd05099	314	cd05099, PTKc_FGFR4, Catalytic domain of the Prote	7e-09
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	8e-09
cd06645	267	cd06645, STKc_MAP4K3, Catalytic domain of the Prot	9e-09
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	9e-09
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	1e-08
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	1e-08
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	1e-08
cd05064	266	cd05064, PTKc_EphR_A10, Catalytic domain of the Pr	1e-08
cd05087	269	cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of t	1e-08
cd05074	273	cd05074, PTKc_Tyro3, Catalytic domain of the Prote	1e-08
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	1e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-08
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	1e-08
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	1e-08
cd05095	296	cd05095, PTKc_DDR2, Catalytic domain of the Protei	3e-08
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	3e-08
cd06639	291	cd06639, STKc_myosinIIIB, Catalytic domain of the	3e-08
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	3e-08
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	3e-08
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	3e-08
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	3e-08
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	4e-08
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	4e-08
cd06643	282	cd06643, STKc_SLK, Catalytic domain of the Protein	4e-08
cd05046	275	cd05046, PTK_CCK4, Pseudokinase domain of the Prot	5e-08
cd08218	256	cd08218, STKc_Nek1, Catalytic domain of the Protei	5e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-08
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	8e-08
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	8e-08
cd06653	264	cd06653, STKc_MEKK3_like_1, Catalytic domain of MA	8e-08
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	9e-08
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	9e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-07
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	1e-07
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	1e-07
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	2e-07
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	2e-07
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	2e-07
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	2e-07
PHA02988	283	PHA02988, PHA02988, hypothetical protein; Provisio	3e-07
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	3e-07
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	3e-07
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	3e-07
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	4e-07
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	4e-07
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	4e-07
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	4e-07
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	5e-07
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	5e-07
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	5e-07
cd05091	283	cd05091, PTKc_Ror2, Catalytic domain of the Protei	6e-07
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	8e-07
cd07848	287	cd07848, STKc_CDKL5, Catalytic domain of the Serin	8e-07
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	1e-06
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	1e-06
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	1e-06
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	2e-06
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	2e-06
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	3e-06
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	3e-06
cd05608	280	cd05608, STKc_GRK1, Catalytic domain of the Protei	3e-06
cd06651	266	cd06651, STKc_MEKK3, Catalytic domain of the Prote	3e-06
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	3e-06
PHA01732	94	PHA01732, PHA01732, proline-rich protein	3e-06
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	3e-06
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	3e-06
cd06637	272	cd06637, STKc_TNIK, Catalytic domain of the Protei	4e-06
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	4e-06
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	5e-06
cd05574	316	cd05574, STKc_phototropin_like, Catalytic domain o	5e-06
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	6e-06
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	6e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	7e-06
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	9e-06
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	1e-05
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	1e-05
cd06652	265	cd06652, STKc_MEKK2, Catalytic domain of the Prote	1e-05
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	1e-05
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	1e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-05
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	2e-05
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	2e-05
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	2e-05
cd08216	314	cd08216, PK_STRAD, Pseudokinase domain of STE20-re	2e-05
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	2e-05
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-05
cd05106	374	cd05106, PTKc_CSF-1R, Catalytic domain of the Prot	3e-05
cd05614	332	cd05614, STKc_MSK2_N, N-terminal catalytic domain	3e-05
cd05631	285	cd05631, STKc_GRK4, Catalytic domain of the Protei	3e-05
cd06636	282	cd06636, STKc_MAP4K4_6, Catalytic domain of the Pr	3e-05
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	3e-05
cd06659	297	cd06659, STKc_PAK6, Catalytic domain of the Protei	3e-05
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	3e-05
cd05043	280	cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Rece	4e-05
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	4e-05
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	4e-05
PHA01732	94	PHA01732, PHA01732, proline-rich protein	6e-05
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	6e-05
cd05629	377	cd05629, STKc_NDR_like_fungal, Catalytic domain of	7e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	8e-05
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	8e-05
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	8e-05
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	9e-05
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	9e-05
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	9e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	1e-04
PTZ00426	340	PTZ00426, PTZ00426, cAMP-dependent protein kinase	1e-04
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	1e-04
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	1e-04
pfam10138	98	pfam10138, Tellurium_res, Tellurium resistance pro	2e-04
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	2e-04
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	2e-04
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	2e-04
PHA03291	401	PHA03291, PHA03291, envelope glycoprotein I; Provi	2e-04
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	2e-04
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	2e-04
PRK14952	584	PRK14952, PRK14952, DNA polymerase III subunits ga	2e-04
cd05571	323	cd05571, STKc_PKB, Catalytic domain of the Protein	3e-04
cd05037	259	cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) dom	3e-04
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	3e-04
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	3e-04
pfam10138	98	pfam10138, Tellurium_res, Tellurium resistance pro	4e-04
pfam10138	98	pfam10138, Tellurium_res, Tellurium resistance pro	4e-04
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	4e-04
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	4e-04
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	4e-04
cd05603	321	cd05603, STKc_SGK2, Catalytic domain of the Protei	4e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-04
PHA01732	94	PHA01732, PHA01732, proline-rich protein	5e-04
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	5e-04
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	5e-04
cd07869	303	cd07869, STKc_PFTAIRE1, Catalytic domain of the Se	5e-04
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	5e-04
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	5e-04
pfam01213	313	pfam01213, CAP_N, Adenylate cyclase associated (CA	5e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	6e-04
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	6e-04
cd08219	255	cd08219, STKc_Nek3, Catalytic domain of the Protei	6e-04
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	6e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-04
cd05107	401	cd05107, PTKc_PDGFR_beta, Catalytic domain of the	7e-04
cd07871	288	cd07871, STKc_PCTAIRE3, Catalytic domain of the Se	7e-04
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	8e-04
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	8e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	8e-04
cd05077	262	cd05077, PTK_Jak1_rpt1, Pseudokinase (repeat 1) do	8e-04
cd05604	325	cd05604, STKc_SGK3, Catalytic domain of the Protei	8e-04
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	9e-04
pfam01213	313	pfam01213, CAP_N, Adenylate cyclase associated (CA	9e-04
pfam10138	98	pfam10138, Tellurium_res, Tellurium resistance pro	0.001
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.001
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	0.001
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	0.001
pfam01213	313	pfam01213, CAP_N, Adenylate cyclase associated (CA	0.001
pfam01213	313	pfam01213, CAP_N, Adenylate cyclase associated (CA	0.001
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.001
cd05602	325	cd05602, STKc_SGK1, Catalytic domain of the Protei	0.001
cd05586	330	cd05586, STKc_Sck1_like, Catalytic domain of Suppr	0.001
cd07868	317	cd07868, STKc_CDK8, Catalytic domain of the Serine	0.001
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	0.001
cd05116	257	cd05116, PTKc_Syk, Catalytic domain of the Protein	0.001
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	0.002
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	0.002
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	0.002
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	0.002
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	0.002
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.002
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.002
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	0.002
pfam10146	215	pfam10146, zf-C4H2, Zinc finger-containing protein	0.002
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	0.002
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	0.002
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	0.002
cd05613	290	cd05613, STKc_MSK1_N, N-terminal catalytic domain	0.002
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.003
cd07873	301	cd07873, STKc_PCTAIRE1, Catalytic domain of the Se	0.003
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	0.003
cd05594	325	cd05594, STKc_PKB_alpha, Catalytic domain of the P	0.003
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	0.003
pfam05308	248	pfam05308, Mito_fiss_reg, Mitochondrial fission re	0.003
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	0.003
cd05078	258	cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat	0.003
pfam01213	313	pfam01213, CAP_N, Adenylate cyclase associated (CA	0.004
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.004
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.004
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	0.004
pfam05308	248	pfam05308, Mito_fiss_reg, Mitochondrial fission re	0.004
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	0.004

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score =  120 bits (302), Expect = 7e-31
 Identities = 52/147 (35%), Positives = 79/147 (53%), Gaps = 9/147 (6%)

Query: 517 IGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           +G G  G+VY A+    GK +A+K + K  SS   ++   E +  + ++ H NIV+L G 
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLRE-IEILKKLNHPNIVKLYGV 59

Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
             +     L+ EYC  G+L+D+L    E +  LS +  +R+ L     LEYLH      I
Sbjct: 60  FEDENHLYLVMEYCEGGSLKDLLK---ENEGKLSEDEILRILLQILEGLEYLHSN---GI 113

Query: 636 VHRNFKSANILLDDDLA-VSVSDCGLA 661
           +HR+ K  NILLD D   V ++D GL+
Sbjct: 114 IHRDLKPENILLDSDNGKVKLADFGLS 140

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score =  116 bits (292), Expect = 4e-29
 Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 12/164 (7%)

Query: 517 IGAGMLGSVYRAQLPDGKLL-----AVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +G G  G VY+  L           AVK L + AS +++++ FLE  + + ++ H NIV 
Sbjct: 7   LGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREE-FLEEASIMKKLSHPNIVR 65

Query: 572 LKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEIC 631
           L G C +     ++ EY   G L D L    +    L+    ++MAL  A+ +EYL    
Sbjct: 66  LLGVCTQGEPLYIVTEYMPGGDLLDFLR---KHGEKLTLKDLLQMALQIAKGMEYLESK- 121

Query: 632 QPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSHN 675
               VHR+  + N L+ ++L V +SD GL+  I      +    
Sbjct: 122 --NFVHRDLAARNCLVTENLVVKISDFGLSRDIYEDDYYRKRGG 163

Length = 258

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score =  111 bits (281), Expect = 2e-27
 Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 12/158 (7%)

Query: 517 IGAGMLGSVYRAQL--PDGKLL---AVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +G G  G VY+ +L    GK     AVK L + AS QQ + EFL     + ++ H N+V+
Sbjct: 7   LGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIE-EFLREARIMRKLDHPNVVK 65

Query: 572 LKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEIC 631
           L G C E     ++ EY   G L   L    + +  LS +  +  AL  AR +EYL    
Sbjct: 66  LLGVCTEEEPLYIVMEYMEGGDLLSYLR---KNRPKLSLSDLLSFALQIARGMEYLESK- 121

Query: 632 QPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSV 669
               +HR+  + N L+ ++L V +SD GL+  +     
Sbjct: 122 --NFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDY 157

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score =  111 bits (281), Expect = 2e-27
 Identities = 49/170 (28%), Positives = 75/170 (44%), Gaps = 13/170 (7%)

Query: 515 NLIGAGMLGSVYRAQL---PDGKLL-AVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
             +G G  G VY+ +L          AVK L + AS +++ D FL+    + ++ H N+V
Sbjct: 1   KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKD-FLKEARVMKKLGHPNVV 59

Query: 571 ELKGYCAEHGQRLLIYEYCSNGTLQDMLHS-----DDELKNNLSWNTRIRMALGAARALE 625
            L G C E     L+ EY   G L D L           K+ LS    +  A+  A+ +E
Sbjct: 60  RLLGVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGME 119

Query: 626 YLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSHN 675
           YL        VHR+  + N L+ +DL V +SD GL+  +      +    
Sbjct: 120 YLASK---KFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTG 166

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score =  109 bits (275), Expect = 8e-27
 Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 517 IGAGMLGSVYRAQL----PDGKLL-AVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +G G  G VY+  L       ++  AVK L + AS QQ + EFL     + ++ H NIV+
Sbjct: 7   LGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIE-EFLREARIMRKLDHPNIVK 65

Query: 572 LKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEIC 631
           L G C E    +++ EY   G L D L  +      LS +  +  AL  AR +EYL    
Sbjct: 66  LLGVCTEEEPLMIVMEYMPGGDLLDYLRKNRP--KELSLSDLLSFALQIARGMEYLESK- 122

Query: 632 QPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSV 669
               +HR+  + N L+ ++L V +SD GL+  +     
Sbjct: 123 --NFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDY 158

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score =  108 bits (273), Expect = 2e-26
 Identities = 54/146 (36%), Positives = 77/146 (52%), Gaps = 8/146 (5%)

Query: 517 IGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           +G+G  G+VY+A+    GK++AVK L KR+   +KD      +  + R+ H NIV L   
Sbjct: 7   LGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSHPNIVRLIDA 66

Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
             +     L+ EYC  G L D L         LS +   ++AL   R LEYLH      I
Sbjct: 67  FEDKDHLYLVMEYCEGGDLFDYLSR----GGPLSEDEAKKIALQILRGLEYLHSN---GI 119

Query: 636 VHRNFKSANILLDDDLAVSVSDCGLA 661
           +HR+ K  NILLD++  V ++D GLA
Sbjct: 120 IHRDLKPENILLDENGVVKIADFGLA 145

Length = 260

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  108 bits (270), Expect = 4e-24
 Identities = 75/220 (34%), Positives = 122/220 (55%), Gaps = 15/220 (6%)

Query: 31  FSCAVTNPNDVAAINSLYAALGSPV--LPGWVASAGDPCGESWQGVQC-NASDIIAIILN 87
           FS    +  ++  + S  +++  P+  L  W +SA D C   WQG+ C N+S +++I L+
Sbjct: 23  FSM--LHAEELELLLSFKSSINDPLKYLSNWNSSA-DVC--LWQGITCNNSSRVVSIDLS 77

Query: 88  GANLGGELGENLGAFSSIRVIDLSNNHIGGSIP---SILPVTMQNFFLSDNQFSGSIPSS 144
           G N+ G++   +     I+ I+LSNN + G IP        +++   LS+N F+GSIP  
Sbjct: 78  GKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR- 136

Query: 145 LATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHL 204
             ++  L  + L+NN+LSGEIP+   S + L  LDL  N L G++P SL NL+ L  L L
Sbjct: 137 -GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195

Query: 205 QNNQLSGTL--DVLQDLPLRDLNIENNLFSGPIPEKMLQI 242
            +NQL G +  ++ Q   L+ + +  N  SG IP ++  +
Sbjct: 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL 235

Length = 968

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score =  101 bits (254), Expect = 5e-24
 Identities = 49/152 (32%), Positives = 74/152 (48%), Gaps = 9/152 (5%)

Query: 511 FSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
           +     +G G  G VY A+    GKL+A+K + K+   + ++    E +  + +++H NI
Sbjct: 1   YEILEKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILRE-IKILKKLKHPNI 59

Query: 570 VELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
           V L     +  +  L+ EYC  G L D+L     L  + +             ALEYLH 
Sbjct: 60  VRLYDVFEDEDKLYLVMEYCEGGDLFDLLKKRGRLSEDEAR----FYLRQILSALEYLHS 115

Query: 630 ICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
                IVHR+ K  NILLD+D  V ++D GLA
Sbjct: 116 KG---IVHRDLKPENILLDEDGHVKLADFGLA 144

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  103 bits (257), Expect = 1e-22
 Identities = 57/152 (37%), Positives = 85/152 (55%), Gaps = 7/152 (4%)

Query: 90  NLGGELGENLGAFSSIRVIDLSNNHIGGSIP-SILPVTMQNFFLSDNQFSGSIPSSLATL 148
           NL G +        S++++ L+ N   G +P S     ++N  LS NQFSG++P  L +L
Sbjct: 439 NLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSL 498

Query: 149 TLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQ 208
           + L  + L+ N LSGEIPD   S   L++LDLS N LSG++P S   +  L+ L L  NQ
Sbjct: 499 SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ 558

Query: 209 LSGTLDVLQDL----PLRDLNIENNLFSGPIP 236
           LSG  ++ ++L     L  +NI +N   G +P
Sbjct: 559 LSG--EIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 92.8 bits (231), Expect = 6e-21
 Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 20/163 (12%)

Query: 513 QENLIGAGMLGSVYRA-QLPDGKLLAVKKL----DKRASSQQKDDEFLELVNNIDRIRHA 567
           + N IG G  G VY A  L  G+L+AVK++    +   + ++  DE    +  ++ ++H 
Sbjct: 4   RGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADE----MKVLELLKHP 59

Query: 568 NIVELKGYCAE-HGQRLLIY-EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALE 625
           N+V  K Y  E H +++ I+ EYCS GTL+++L    E    L  +      L     L 
Sbjct: 60  NLV--KYYGVEVHREKVYIFMEYCSGGTLEELL----EHGRILDEHVIRVYTLQLLEGLA 113

Query: 626 YLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
           YLH      IVHR+ K ANI LD +  + + D G A  + + +
Sbjct: 114 YLHS---HGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNT 153

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 91.5 bits (228), Expect = 1e-20
 Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 14/170 (8%)

Query: 510 SFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
            +++  L+G G  GSVY A   D G+L+AVK ++    S+++ +     +  +  ++H N
Sbjct: 1   EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPN 60

Query: 569 IVELKGYC--AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRI--RMALGAARAL 624
           IV   G     E     +  EY S G+L  +L    +L   +    R   R  L     L
Sbjct: 61  IVRYYGSERDEEKNTLNIFLEYVSGGSLSSLLKKFGKLPEPV---IRKYTRQIL---EGL 114

Query: 625 EYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSH 674
            YLH      IVHR+ K ANIL+D D  V ++D G A  +      + + 
Sbjct: 115 AYLHSNG---IVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTG 161

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 94.9 bits (236), Expect = 5e-20
 Identities = 73/207 (35%), Positives = 105/207 (50%), Gaps = 16/207 (7%)

Query: 38  PNDVAAINSL-YAALGSPVLPGWVASAGDPCGESWQGVQCNASDIIAIILNGANLGGELG 96
           PND+ + +SL    LG  VL G +                N + +  + L    L G++ 
Sbjct: 157 PNDIGSFSSLKVLDLGGNVLVGKIP-----------NSLTNLTSLEFLTLASNQLVGQIP 205

Query: 97  ENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPSSLATLTLLTDM 154
             LG   S++ I L  N++ G IP  +    ++ +  L  N  +G IPSSL  L  L  +
Sbjct: 206 RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYL 265

Query: 155 SLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLD 214
            L  N LSG IP +  SL  LI+LDLS N+LSGE+P  +  L  L  LHL +N  +G + 
Sbjct: 266 FLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP 325

Query: 215 V-LQDLP-LRDLNIENNLFSGPIPEKM 239
           V L  LP L+ L + +N FSG IP+ +
Sbjct: 326 VALTSLPRLQVLQLWSNKFSGEIPKNL 352

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 92.6 bits (230), Expect = 2e-19
 Identities = 60/174 (34%), Positives = 93/174 (53%), Gaps = 9/174 (5%)

Query: 76  CNASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPS-ILPVTMQNFF-LS 133
           C++ ++  +IL   +L GE+ ++LGA  S+R + L +N   G +PS    + +  F  +S
Sbjct: 377 CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDIS 436

Query: 134 DNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSL 193
           +N   G I S    +  L  +SL  N   G +PD+F S   L NLDLS N  SG +P  L
Sbjct: 437 NNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKL 495

Query: 194 ENLSQLTTLHLQNNQLSGTLDVLQDLP----LRDLNIENNLFSGPIPEKMLQIP 243
            +LS+L  L L  N+LSG  ++  +L     L  L++ +N  SG IP    ++P
Sbjct: 496 GSLSELMQLKLSENKLSG--EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMP 547

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 88.8 bits (220), Expect = 4e-18
 Identities = 53/157 (33%), Positives = 78/157 (49%), Gaps = 3/157 (1%)

Query: 90  NLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNF--FLSDNQFSGSIPSSLAT 147
              GE+ +NLG  +++ V+DLS N++ G IP  L  +   F   L  N   G IP SL  
Sbjct: 343 KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA 402

Query: 148 LTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNN 207
              L  + L +N  SGE+P  F  L  +  LD+S+NNL G +     ++  L  L L  N
Sbjct: 403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN 462

Query: 208 QLSGTL-DVLQDLPLRDLNIENNLFSGPIPEKMLQIP 243
           +  G L D      L +L++  N FSG +P K+  + 
Sbjct: 463 KFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLS 499

Length = 968

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 83.6 bits (207), Expect = 6e-18
 Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 9/146 (6%)

Query: 516 LIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
            IG G  G V       G+ +AVK L   +++ Q    FL   + +  +RH N+V+L G 
Sbjct: 13  TIGKGEFGDVMLGDY-RGQKVAVKCLKDDSTAAQA---FLAEASVMTTLRHPNLVQLLGV 68

Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
             +     ++ EY + G+L D L S       L+   ++  AL     +EYL E      
Sbjct: 69  VLQGNPLYIVTEYMAKGSLVDYLRSRGRAVITLA--QQLGFALDVCEGMEYLEE---KNF 123

Query: 636 VHRNFKSANILLDDDLAVSVSDCGLA 661
           VHR+  + N+L+ +DL   VSD GLA
Sbjct: 124 VHRDLAARNVLVSEDLVAKVSDFGLA 149

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 86.8 bits (215), Expect = 2e-17
 Identities = 60/175 (34%), Positives = 91/175 (52%), Gaps = 6/175 (3%)

Query: 77  NASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIP---SILPVTMQNFFLS 133
           +   +I++ L+  +L GE+ E +    ++ ++ L +N+  G IP   + LP  +Q   L 
Sbjct: 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLP-RLQVLQLW 340

Query: 134 DNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSL 193
            N+FSG IP +L     LT + L+ N L+GEIP+   S   L  L L SN+L GE+P SL
Sbjct: 341 SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL 400

Query: 194 ENLSQLTTLHLQNNQLSGTLDV-LQDLPLRD-LNIENNLFSGPIPEKMLQIPNFR 246
                L  + LQ+N  SG L      LPL   L+I NN   G I  +   +P+ +
Sbjct: 401 GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455

Length = 968

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 81.3 bits (201), Expect = 6e-17
 Identities = 52/185 (28%), Positives = 91/185 (49%), Gaps = 28/185 (15%)

Query: 511 FSQENLIGAGMLGSVYRAQL--PDGKL----LAVKKLDKRASSQQKDDEFLELVNNIDRI 564
           F +E  +G G  G VY+ +L  P+ +L    +A+K L + A  + + + F +    +  +
Sbjct: 9   FLEE--LGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQE-FRQEAELMSDL 65

Query: 565 RHANIVELKGYCAEHGQRLLIYEYCSNGTLQDML-----HSD-------DELKNNLSWNT 612
           +H NIV L G C +     +++EY ++G L + L     HSD       + +K++L  + 
Sbjct: 66  QHPNIVCLLGVCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSD 125

Query: 613 RIRMALGAARALEYL--HEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVS 670
            + +A+  A  +EYL  H       VHR+  + N L+ + L V +SD GL+  I S    
Sbjct: 126 FLHIAIQIAAGMEYLSSHH-----FVHRDLAARNCLVGEGLTVKISDFGLSRDIYSADYY 180

Query: 671 QVSHN 675
           +V   
Sbjct: 181 RVQSK 185

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 80.7 bits (200), Expect = 6e-17
 Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 29/172 (16%)

Query: 511 FSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
           F     IG G  G VY+A     GK +A+K +     S++K ++ +  +  + + +H NI
Sbjct: 2   FEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLE--SKEKKEKIINEIQILKKCKHPNI 59

Query: 570 VELKGYCAEHGQRLLIYEYCSNGTLQDML----HSDDE------LKNNLSWNTRIRMALG 619
           V+  G   +  +  ++ E+CS G+L+D+L     +  E       K  L           
Sbjct: 60  VKYYGSYLKKDELWIVMEFCSGGSLKDLLKSTNQTLTESQIAYVCKELLK---------- 109

Query: 620 AARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQ 671
               LEYLH      I+HR+ K+ANILL  D  V + D GL+  +S      
Sbjct: 110 ---GLEYLHSN---GIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARN 155

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 78.9 bits (195), Expect = 3e-16
 Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 11/162 (6%)

Query: 509 NSFSQENLIGAGMLGSVYRA--QLPDGK--LLAVKKLDKRASSQQKDDEFLELVNNIDRI 564
           +  + E +IG G  G V R   +LP  K   +A+K L   +S +Q+ D FL   + + + 
Sbjct: 4   SYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLD-FLTEASIMGQF 62

Query: 565 RHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARAL 624
            H NI+ L+G   +    ++I EY  NG+L   L  +D      +    + M  G A  +
Sbjct: 63  DHPNIIRLEGVVTKSRPVMIITEYMENGSLDKFLRENDG---KFTVGQLVGMLRGIASGM 119

Query: 625 EYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS 666
           +YL E+     VHR+  + NIL++ +L   VSD GL+  +  
Sbjct: 120 KYLSEMN---YVHRDLAARNILVNSNLVCKVSDFGLSRRLED 158

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 78.4 bits (194), Expect = 3e-16
 Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 8/148 (5%)

Query: 515 NLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELK 573
           +LIG G  G VY+   L  G  +A+K++      ++     ++ ++ +  ++H NIV+  
Sbjct: 6   DLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYI 65

Query: 574 GYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQP 633
           G         +I EY  NG+L+ ++        +L     +   L   + L YLHE    
Sbjct: 66  GSIETSDSLYIILEYAENGSLRQIIKKFGPFPESLV-AVYVYQVL---QGLAYLHE---Q 118

Query: 634 PIVHRNFKSANILLDDDLAVSVSDCGLA 661
            ++HR+ K+ANIL   D  V ++D G+A
Sbjct: 119 GVIHRDIKAANILTTKDGVVKLADFGVA 146

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 78.3 bits (194), Expect = 5e-16
 Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 16/158 (10%)

Query: 511 FSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLD-KRASSQQKDDEFLELVNNIDRIRHAN 568
           +     IG G  G VY  +   DGKL  +K++D    S ++++D   E V  + ++ H N
Sbjct: 2   YEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNE-VKILKKLNHPN 60

Query: 569 IVELKGYCAEHGQRLLI-YEYCSNGTLQDMLHSDDELKNNLS----WNTRIRMALGAARA 623
           I++      E   +L I  EY   G L   +    +           +  +++ L    A
Sbjct: 61  IIKYYE-SFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCL----A 115

Query: 624 LEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           L+YLH      I+HR+ K  NI L  +  V + D G++
Sbjct: 116 LKYLHSR---KILHRDIKPQNIFLTSNGLVKLGDFGIS 150

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 80.2 bits (198), Expect = 1e-15
 Identities = 49/164 (29%), Positives = 77/164 (46%), Gaps = 28/164 (17%)

Query: 36  TNPNDVAAINSLYAALGSPVLPGWVASAGDPCG---ESWQGVQCNASDII-AIILNGANL 91
           T   +V+A+ +L ++LG P+  GW    GDPC      W G  C          ++G   
Sbjct: 369 TLLEEVSALQTLKSSLGLPLRFGW---NGDPCVPQQHPWSGADCQFDSTKGKWFIDG--- 422

Query: 92  GGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVT--MQNFFLSDNQFSGSIPSSLATLT 149
                           + L N  + G IP+ +     +Q+  LS N   G+IP SL ++T
Sbjct: 423 ----------------LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSIT 466

Query: 150 LLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSL 193
            L  + L+ N  +G IP++   LT L  L+L+ N+LSG +P +L
Sbjct: 467 SLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 75.7 bits (187), Expect = 3e-15
 Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 9/160 (5%)

Query: 517 IGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           IG G  G+V + +   DGK+L  K++D    ++++  + +  VN +  ++H NIV    Y
Sbjct: 8   IGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRY--Y 65

Query: 576 CAEH---GQRLLIY-EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH--E 629
                   Q L I  EYC  G L  ++    + +  +      R+      AL   H   
Sbjct: 66  DRIIDRSNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRS 125

Query: 630 ICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSV 669
                ++HR+ K ANI LD +  V + D GLA ++   S 
Sbjct: 126 DPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSS 165

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 74.9 bits (184), Expect = 7e-15
 Identities = 42/162 (25%), Positives = 78/162 (48%), Gaps = 10/162 (6%)

Query: 511 FSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
           F   N IG G  G V++  +  D ++ A+K++D    ++++ +E ++    + ++  + I
Sbjct: 2   FEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYI 61

Query: 570 VELKGYCAEHGQRLLIYEYCSNGTLQDMLHSD--DELKNNLSWNTRIRMALGAARALEYL 627
           +       + G+  ++ EY  NG L  +L       L  +  W   I++ LG    L +L
Sbjct: 62  IRYYESFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLG----LAHL 117

Query: 628 HEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSV 669
           H      I+HR+ KS N+ LD    V + D G+A L+S  + 
Sbjct: 118 H---SKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTN 156

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 74.8 bits (184), Expect = 1e-14
 Identities = 50/152 (32%), Positives = 80/152 (52%), Gaps = 11/152 (7%)

Query: 517 IGAGMLGSVYRAQ-LPDGKLLAVKKLDKRA-SSQQKDDEFLELVNNIDRIRHANIVELKG 574
           IG G  G+VY A+ +   +++A+KK+      S +K  + ++ V  + ++RH N +E KG
Sbjct: 23  IGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKG 82

Query: 575 -YCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQP 633
            Y  EH    L+ EYC  G+  D+L   +  K  L       +  GA + L YLH   + 
Sbjct: 83  CYLREH-TAWLVMEYCL-GSASDIL---EVHKKPLQEVEIAAICHGALQGLAYLHSHER- 136

Query: 634 PIVHRNFKSANILLDDDLAVSVSDCGLAPLIS 665
             +HR+ K+ NILL +   V ++D G A L+S
Sbjct: 137 --IHRDIKAGNILLTEPGTVKLADFGSASLVS 166

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 74.0 bits (182), Expect = 1e-14
 Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 13/151 (8%)

Query: 516 LIGAGMLGSVYRA-QLPDGKLLAVKK---LDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           L+G+G  GSVY    L DG   AVK+    D   + Q+   +  + +  + +++H NIV+
Sbjct: 7   LLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQ 66

Query: 572 LKGYCAEHGQRLLIY-EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
             G        L I+ E    G+L  +L         +      ++ LG    LEYLH+ 
Sbjct: 67  YLG-TEREEDNLYIFLELVPGGSLAKLLKKYGSFPEPVIRLYTRQILLG----LEYLHD- 120

Query: 631 CQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
                VHR+ K ANIL+D +  V ++D G+A
Sbjct: 121 --RNTVHRDIKGANILVDTNGVVKLADFGMA 149

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 74.0 bits (182), Expect = 2e-14
 Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 14/161 (8%)

Query: 515 NLIGAGMLGSVYRAQLP-----DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
             +G G  G V   +        G+ +AVK L+     Q + D F   +  +  + H NI
Sbjct: 10  KQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSD-FEREIEILRTLDHENI 68

Query: 570 VELKGYCAEHGQR--LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYL 627
           V+ KG C + G R   LI EY  +G+L+D L      ++ ++    +  +    + ++YL
Sbjct: 69  VKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQ---RHRDQINLKRLLLFSSQICKGMDYL 125

Query: 628 HEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
                   +HR+  + NIL++ +  V +SD GLA ++    
Sbjct: 126 GS---QRYIHRDLAARNILVESEDLVKISDFGLAKVLPEDK 163

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 8/156 (5%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
            S   E  +GAG  G V+         +AVK L K  +   +   FL+    + ++RH  
Sbjct: 6   ESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTL-KPGTMSPEA--FLQEAQIMKKLRHDK 62

Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           +V+L   C+E     ++ EY S G+L D L S +     L     + MA   A  + YL 
Sbjct: 63  LVQLYAVCSEEEPIYIVTEYMSKGSLLDFLKSGE--GKKLRLPQLVDMAAQIAEGMAYLE 120

Query: 629 EICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI 664
                  +HR+  + NIL+ ++L   ++D GLA LI
Sbjct: 121 SR---NYIHRDLAARNILVGENLVCKIADFGLARLI 153

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 72.7 bits (179), Expect = 4e-14
 Identities = 51/160 (31%), Positives = 80/160 (50%), Gaps = 27/160 (16%)

Query: 517 IGAGMLGSVYRAQ-LPDGKLLAVK--KLDKRASSQQKDDEFLELVNNID---RIRHANIV 570
           IG+G  G VY+A+ +  G+L+A+K  KL+         D+F  +   I      RH NIV
Sbjct: 11  IGSGTYGDVYKARDIATGELVAIKVIKLEP-------GDDFEIIQQEISMLKECRHPNIV 63

Query: 571 ELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRI----RMALGAARALEY 626
              G      +  ++ EYC  G+LQD+       +  LS   +I    R  L   + L Y
Sbjct: 64  AYFGSYLRRDKLWIVMEYCGGGSLQDIYQ---VTRGPLS-ELQIAYVCRETL---KGLAY 116

Query: 627 LHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS 666
           LHE  +   +HR+ K ANILL +D  V ++D G++  +++
Sbjct: 117 LHETGK---IHRDIKGANILLTEDGDVKLADFGVSAQLTA 153

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 72.2 bits (177), Expect = 7e-14
 Identities = 52/158 (32%), Positives = 77/158 (48%), Gaps = 16/158 (10%)

Query: 517 IGAGMLGSV--YR---AQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +G G  G V  Y    A    G+++AVK L KR   QQ    + + +N +  + H NIV+
Sbjct: 12  LGEGHFGKVSLYCYDPANDGTGEMVAVKTL-KRECGQQNTSGWKKEINILKTLYHENIVK 70

Query: 572 LKGYCAEHGQR--LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
            KG C+E G +   LI EY   G+L+D L      K+ L+    +  A      + YLH 
Sbjct: 71  YKGCCSEQGGKGLQLIMEYVPLGSLRDYLP-----KHKLNLAQLLLFAQQICEGMAYLH- 124

Query: 630 ICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG 667
                 +HR+  + N+LLD+D  V + D GLA  +  G
Sbjct: 125 --SQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEG 160

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 73.3 bits (180), Expect = 2e-13
 Identities = 36/102 (35%), Positives = 58/102 (56%), Gaps = 2/102 (1%)

Query: 93  GELGENLGAFSSIRVIDLSNNHIGGSIPSILPV--TMQNFFLSDNQFSGSIPSSLATLTL 150
           G +   LG+ S +  + LS N + G IP  L     + +  LS NQ SG IP+S + + +
Sbjct: 489 GAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPV 548

Query: 151 LTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPS 192
           L+ + L+ N LSGEIP    ++  L+ +++S N+L G LP +
Sbjct: 549 LSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 70.2 bits (172), Expect = 2e-13
 Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 11/148 (7%)

Query: 516 LIGAGMLGSVYRAQLPDGKLLAVK--KLDKRASSQQKDDEFLELVNNIDRIRHANIVELK 573
            IG G  G VY+  L     +AVK  +       ++K   FL+    + +  H NIV+L 
Sbjct: 2   KIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRK---FLQEAEILKQYDHPNIVKLI 58

Query: 574 GYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQP 633
           G C +     ++ E    G+L   L      KN L+    ++M+L AA  +EYL      
Sbjct: 59  GVCVQKQPIYIVMELVPGGSLLTFLRKK---KNRLTVKKLLQMSLDAAAGMEYLESKN-- 113

Query: 634 PIVHRNFKSANILLDDDLAVSVSDCGLA 661
             +HR+  + N L+ ++  + +SD G++
Sbjct: 114 -CIHRDLAARNCLVGENNVLKISDFGMS 140

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 72.1 bits (175), Expect = 2e-13
 Identities = 59/176 (33%), Positives = 85/176 (48%), Gaps = 9/176 (5%)

Query: 510 SFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDE-FLELVNNIDRIRHA- 567
           S+     +G G  G VY A+  D KL+A+K L K+  S+ K+ E FL  +  +  + H  
Sbjct: 1   SYRILRKLGEGSFGEVYLAR--DRKLVALKVLAKKLESKSKEVERFLREIQILASLNHPP 58

Query: 568 NIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYL 627
           NIV+L  +  + G   L+ EY   G+L+D+L      K  LS +  + +      ALEYL
Sbjct: 59  NIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGR-KGPLSESEALFILAQILSALEYL 117

Query: 628 HEICQPPIVHRNFKSANILLDDDL-AVSVSDCGLAPLISSGSVSQVSHNLTIMRAG 682
           H      I+HR+ K  NILLD D   V + D GLA L+     +     L     G
Sbjct: 118 HSKG---IIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVG 170

Length = 384

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 70.0 bits (171), Expect = 3e-13
 Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 11/157 (7%)

Query: 509 NSFSQENLIGAGMLGSVYRA--QLPDGK--LLAVKKLDKRASSQQKDDEFLELVNNIDRI 564
           +  +++ +IGAG  G V+R   ++P  K   +A+K L    + +Q+ D FL   + + + 
Sbjct: 5   SHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQD-FLSEASIMGQF 63

Query: 565 RHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARAL 624
            H NI+ L+G   +    ++I EY  NG L   L   D      S    + M  G A  +
Sbjct: 64  SHHNIIRLEGVVTKFKPAMIITEYMENGALDKYLRDHD---GEFSSYQLVGMLRGIAAGM 120

Query: 625 EYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           +YL ++     VHR+  + NIL++ +L   VSD GL+
Sbjct: 121 KYLSDM---NYVHRDLAARNILVNSNLECKVSDFGLS 154

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 69.2 bits (169), Expect = 5e-13
 Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 11/155 (7%)

Query: 510 SFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
           +  QE  IG+G  G V+     + + +A+K + + A S++   +F+E    + ++ H  +
Sbjct: 7   TLVQE--IGSGQFGLVWLGYWLEKRKVAIKTIREGAMSEE---DFIEEAQVMMKLSHPKL 61

Query: 570 VELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
           V+L G C E     L++E+  +G L D L +    +   S  T + M L     + YL  
Sbjct: 62  VQLYGVCTERSPICLVFEFMEHGCLSDYLRAQ---RGKFSQETLLGMCLDVCEGMAYLES 118

Query: 630 ICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI 664
                ++HR+  + N L+ ++  V VSD G+   +
Sbjct: 119 SN---VIHRDLAARNCLVGENQVVKVSDFGMTRFV 150

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 69.8 bits (171), Expect = 6e-13
 Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 29/168 (17%)

Query: 516 LIGAGMLGSVYRAQL-----PDGKL-LAVKKLDKRASSQQKDDEFLELVNNIDRI----R 565
            +G G  G V +A+      P+    +AVK L   A+    + +  +LV+ ++ +    +
Sbjct: 19  PLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDAT----EKDLSDLVSEMEMMKMIGK 74

Query: 566 HANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHS------------DDELKNNLSWNTR 613
           H NI+ L G C + G   ++ EY ++G L+D L +                +  L+    
Sbjct: 75  HKNIINLLGVCTQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDL 134

Query: 614 IRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           +  A   AR +E+L        +HR+  + N+L+ +D  + ++D GLA
Sbjct: 135 VSFAYQVARGMEFL---ASKKCIHRDLAARNVLVTEDHVMKIADFGLA 179

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 69.0 bits (169), Expect = 6e-13
 Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 7/154 (4%)

Query: 511 FSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           F+ E  +G+G  G V+     +   +A+K L  ++    K  +F + V  + R+RH +++
Sbjct: 8   FTLERKLGSGYFGEVWEGLWKNRVRVAIKIL--KSDDLLKQQDFQKEVQALKRLRHKHLI 65

Query: 571 ELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
            L   C+      +I E    G+L   L S +     L   + I MA   A  + YL E 
Sbjct: 66  SLFAVCSVGEPVYIITELMEKGSLLAFLRSPEG--QVLPVASLIDMACQVAEGMAYLEE- 122

Query: 631 CQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI 664
                +HR+  + NIL+ +DL   V+D GLA LI
Sbjct: 123 --QNSIHRDLAARNILVGEDLVCKVADFGLARLI 154

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 68.3 bits (167), Expect = 1e-12
 Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 21/161 (13%)

Query: 516 LIGAGMLGSVYRAQLPDG--KLLAVKK-----LDKRASSQQKDDEFLELVNNI----DRI 564
            +G+G  G VY+ +  +    LLA+K+            +++D    ++V+ +    +++
Sbjct: 7   HLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQL 66

Query: 565 RHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLS----WNTRIRMALGA 620
           RH NIV       E+ +  ++ +      L +  +S  E K   +    WN  ++M L  
Sbjct: 67  RHPNIVRYYKTFLENDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVL-- 124

Query: 621 ARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
             AL YLH+  +  IVHR+    NI+L +D  V+++D GLA
Sbjct: 125 --ALRYLHK--EKRIVHRDLTPNNIMLGEDDKVTITDFGLA 161

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

 Score = 68.4 bits (167), Expect = 1e-12
 Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 8/149 (5%)

Query: 517 IGAGMLGSVYRAQLPDGKLLA---VKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELK 573
           IG G  G V   +   G   A   VK+L + +++  +   FL+ V     + H N+++  
Sbjct: 3   IGNGWFGKVLLGEAHRGMSKARVVVKEL-RASATPDEQLLFLQEVQPYRELNHPNVLQCL 61

Query: 574 GYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSW-NTRIRMALGAARALEYLHEICQ 632
           G C E    LL+ E+C  G L++ L S+  +   ++  +   RMA   A  L +LH   Q
Sbjct: 62  GQCIESIPYLLVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLH---Q 118

Query: 633 PPIVHRNFKSANILLDDDLAVSVSDCGLA 661
              +H +    N  L  DL+V + D GLA
Sbjct: 119 ADFIHSDLALRNCQLTADLSVKIGDYGLA 147

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kinases based on overall sequence similarity and the phylogenetic tree. However, analysis of catalytic residues suggests that Aatyk proteins may be multispecific kinases, functioning also as serine/threonine kinases. They are involved in neural differentiation, nerve growth factor (NGF) signaling, apoptosis, and spermatogenesis. Length = 269

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 68.3 bits (168), Expect = 2e-12
 Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 34/165 (20%)

Query: 517 IGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEF----LELVNNIDRIRHANIVE 571
           IG G  G VY+A+    G+L+A+KK+      + + + F    +  +  + ++RH NIV 
Sbjct: 7   IGEGTYGQVYKARNKKTGELVALKKIRM----ENEKEGFPITAIREIKLLQKLRHPNIVR 62

Query: 572 LKGYCAEH--GQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR------- 622
           LK        G   +++EY  +  L  +L            +  ++      +       
Sbjct: 63  LKEIVTSKGKGSIYMVFEYMDH-DLTGLLD-----------SPEVKFTESQIKCYMKQLL 110

Query: 623 -ALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS 666
             L+YLH      I+HR+ K +NIL+++D  + ++D GLA   + 
Sbjct: 111 EGLQYLHSN---GILHRDIKGSNILINNDGVLKLADFGLARPYTK 152

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 67.6 bits (165), Expect = 2e-12
 Identities = 49/177 (27%), Positives = 84/177 (47%), Gaps = 25/177 (14%)

Query: 516 LIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDR-------IRHA 567
           LIG+G  GSVY       G+L+AVK+++  + S    D    +++ + R       ++H 
Sbjct: 7   LIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHE 66

Query: 568 NIVELKGYCAEHGQRLLIY-EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEY 626
           NIV+  G  +     L I+ EY   G++  +L++    +  L  N  +R  L   + L Y
Sbjct: 67  NIVQYLG-SSLDADHLNIFLEYVPGGSVAALLNNYGAFEETLVRNF-VRQIL---KGLNY 121

Query: 627 LHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSHNLTIMRAGG 683
           LH      I+HR+ K ANIL+D+   + +SD G++         ++  N    +  G
Sbjct: 122 LH---NRGIIHRDIKGANILVDNKGGIKISDFGIS--------KKLEANSLSTKTNG 167

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 67.1 bits (164), Expect = 3e-12
 Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 11/152 (7%)

Query: 510 SFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
           +F +E  +G+G  G V+  +      +A+K + + A S+   D+F+E    + ++ H N+
Sbjct: 7   TFLKE--LGSGQFGVVHLGKWRGKIDVAIKMIREGAMSE---DDFIEEAKVMMKLSHPNL 61

Query: 570 VELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
           V+L G C +     ++ EY +NG L + L    E K  L     + M      A+EYL  
Sbjct: 62  VQLYGVCTKQRPIFIVTEYMANGCLLNYLR---ERKGKLGTEWLLDMCSDVCEAMEYLES 118

Query: 630 ICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
                 +HR+  + N L+ +D  V VSD GLA
Sbjct: 119 NG---FIHRDLAARNCLVGEDNVVKVSDFGLA 147

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 67.5 bits (165), Expect = 3e-12
 Identities = 53/185 (28%), Positives = 81/185 (43%), Gaps = 32/185 (17%)

Query: 517 IGAGMLGSVYRAQLP------DGKLLAVKKLDKRASSQQKDDEFLE--LVNNIDRIRHAN 568
           IG G  G V++A+ P         ++AVK L + AS+  + D   E  L+   D   H N
Sbjct: 13  IGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFD---HPN 69

Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDML------------HSDDEL------KNNLSW 610
           IV+L G CA      L++EY + G L + L            HS             LS 
Sbjct: 70  IVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSC 129

Query: 611 NTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVS 670
             ++ +A   A  + YL E      VHR+  + N L+ +++ V ++D GL+  I S    
Sbjct: 130 TEQLCIAKQVAAGMAYLSE---RKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYY 186

Query: 671 QVSHN 675
           + S N
Sbjct: 187 KASEN 191

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 67.1 bits (164), Expect = 3e-12
 Identities = 48/180 (26%), Positives = 75/180 (41%), Gaps = 34/180 (18%)

Query: 504 LQQYTNSFSQENLIGAGMLGSVYRAQLPDGK------LLAVKKLDKRASSQQKDDEF--- 554
           +Q+ T    +E  +G G  G V+  +    +      L+AVK L K  +S     +F   
Sbjct: 2   VQRDTIVLKRE--LGEGAFGKVFLGECYHLEPENDKELVAVKTL-KETASNDARKDFERE 58

Query: 555 LELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWN--- 611
            EL+ N     H NIV+  G C E    ++++EY  +G L   L S       L      
Sbjct: 59  AELLTNFQ---HENIVKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSP 115

Query: 612 ----TRIRM---ALGAARALEYL---HEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
               T  ++   A+  A  + YL   H       VHR+  + N L+  DL V + D G++
Sbjct: 116 MGELTLSQLLQIAVQIASGMVYLASQH------FVHRDLATRNCLVGYDLVVKIGDFGMS 169

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 66.7 bits (163), Expect = 4e-12
 Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 14/163 (8%)

Query: 511 FSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
           F     +G G  GSVY+ + L D +  A+K++D  + SQ++ ++ +  +  +  + H NI
Sbjct: 2   FKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNI 61

Query: 570 VELKGYCAEHGQRLLI-YEYCSNGTLQDMLHSDDELKNNLS----WNTRIRMALGAARAL 624
           +  K    + G +L I  EY   G L   +    + +  +     W   I++  G    L
Sbjct: 62  ISYKEAFLD-GNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRG----L 116

Query: 625 EYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG 667
           + LHE     I+HR+ KSANILL  +  V + D G++ ++   
Sbjct: 117 QALHEQ---KILHRDLKSANILLVANDLVKIGDLGISKVLKKN 156

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 66.0 bits (161), Expect = 7e-12
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 11/159 (6%)

Query: 514 ENLIGAGMLGSVYRAQL-PDGK---LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
           E +IGAG  G V R +L   GK    +A+K L    + +Q+ D FL   + + +  H NI
Sbjct: 9   EEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRD-FLSEASIMGQFDHPNI 67

Query: 570 VELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
           + L+G   +    ++I E+  NG L   L  +D      +    + M  G A  ++YL E
Sbjct: 68  IHLEGVVTKSRPVMIITEFMENGALDSFLRQND---GQFTVIQLVGMLRGIAAGMKYLSE 124

Query: 630 ICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
           +     VHR+  + NIL++ +L   VSD GL+  +   +
Sbjct: 125 M---NYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDT 160

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 53/164 (32%), Positives = 79/164 (48%), Gaps = 20/164 (12%)

Query: 511 FSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNID---RIRH 566
           F + N IG G  G VYRA+    G+++A+KK+       ++D   +  +  I     +RH
Sbjct: 9   FEKLNRIGEGTYGIVYRARDTTSGEIVALKKV---RMDNERDGIPISSLREITLLLNLRH 65

Query: 567 ANIVELKGYCAEHGQRL----LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR 622
            NIVELK      G+ L    L+ EYC     QD+    D +    S +    + L   R
Sbjct: 66  PNIVELKEVVV--GKHLDSIFLVMEYCE----QDLASLLDNMPTPFSESQVKCLMLQLLR 119

Query: 623 ALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS 666
            L+YLHE     I+HR+ K +N+LL D   + ++D GLA     
Sbjct: 120 GLQYLHENF---IIHRDLKVSNLLLTDKGCLKIADFGLARTYGL 160

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|133217 cd05086, PTKc_Aatyk2, Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

 Score = 65.3 bits (159), Expect = 1e-11
 Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 517 IGAGMLGSVYRAQL---PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELK 573
           IG G  G V  +++        + VK+L   ASS+++++ FL+  +    ++H NI++  
Sbjct: 3   IGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNE-FLQQGDPYRILQHPNILQCL 61

Query: 574 GYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQP 633
           G C E    LL++EYC  G L+  L  +   + N       RMA   A  + ++H+    
Sbjct: 62  GQCVEAIPYLLVFEYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKH--- 118

Query: 634 PIVHRNFKSANILLDDDLAVSVSDCGLAP 662
             +H +    N  L  DL V V D G+ P
Sbjct: 119 NFLHSDLALRNCFLTSDLTVKVGDYGIGP 147

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage spermatogenesis. Although it is classified as a tyr kinase based on sequence similarity and the phylogenetic tree, Aatyk2 has been characterized as a serine/threonine kinase. Length = 268

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 37/167 (22%)

Query: 509 NSFSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNID---RI 564
             F     +G G  GSVY+A     G+++A+K +         +++  E++  I    + 
Sbjct: 3   EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVV-------PVEEDLQEIIKEISILKQC 55

Query: 565 RHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLH------SDDE----LKNNLSWNTRI 614
               IV+  G   ++    ++ EYC  G++ D++       +++E    L   L      
Sbjct: 56  DSPYIVKYYGSYFKNTDLWIVMEYCGAGSVSDIMKITNKTLTEEEIAAILYQTL------ 109

Query: 615 RMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
                  + LEYLH       +HR+ K+ NILL+++    ++D G++
Sbjct: 110 -------KGLEYLH---SNKKIHRDIKAGNILLNEEGQAKLADFGVS 146

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 64.8 bits (159), Expect = 2e-11
 Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 20/158 (12%)

Query: 511 FSQENLIGAGMLGSVYRAQ-LPDGKLLAVKK--LDKRASSQQKDDEF----LELVNNIDR 563
           + +   +G G  G VY+A+    G+++A+KK  LD       +++      L  ++ +  
Sbjct: 1   YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLD------NEEEGIPSTALREISLLKE 54

Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
           ++H NIV+L        +  L++EYC    L+  L         LS N    +     R 
Sbjct: 55  LKHPNIVKLLDVIHTERKLYLVFEYCDM-DLKKYLDK---RPGPLSPNLIKSIMYQLLRG 110

Query: 624 LEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           L Y H      I+HR+ K  NIL++ D  + ++D GLA
Sbjct: 111 LAYCHSHR---ILHRDLKPQNILINRDGVLKLADFGLA 145

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 64.1 bits (156), Expect = 3e-11
 Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 9/154 (5%)

Query: 512 SQENLIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           + ++ +G G  G VY          +AVK L +      + +EFL+    +  I+H N+V
Sbjct: 9   TMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT---MEVEEFLKEAAVMKEIKHPNLV 65

Query: 571 ELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           +L G C       +I E+ + G L D L   +  +  ++    + MA   + A+EYL   
Sbjct: 66  QLLGVCTREPPFYIITEFMTYGNLLDYLRECN--RQEVNAVVLLYMATQISSAMEYLE-- 121

Query: 631 CQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI 664
            +   +HR+  + N L+ ++  V V+D GL+ L+
Sbjct: 122 -KKNFIHRDLAARNCLVGENHLVKVADFGLSRLM 154

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 63.7 bits (155), Expect = 5e-11
 Identities = 46/165 (27%), Positives = 72/165 (43%), Gaps = 15/165 (9%)

Query: 516 LIGAGMLGSVYRAQL--PDGKLL--AVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           ++G G  GSV   QL   DG  L  AVK +     +  + +EFL     +    H N+++
Sbjct: 6   ILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMK 65

Query: 572 LKGYCAEHGQR------LLIYEYCSNGTLQDMLHSD--DELKNNLSWNTRIRMALGAARA 623
           L G C E          ++I  +  +G L   L       L   L   T ++  +  A  
Sbjct: 66  LIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALG 125

Query: 624 LEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
           +EYL        +HR+  + N +L +D+ V V+D GL+  I SG 
Sbjct: 126 MEYL---SNRNFIHRDLAARNCMLREDMTVCVADFGLSKKIYSGD 167

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 63.9 bits (155), Expect = 6e-11
 Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 22/165 (13%)

Query: 514 ENLIGAGMLGSVYRAQLP-DG-KLLAVKKLDKRASSQQKDDEF---LELVNNIDRIRHAN 568
           E++IG G  G V RA +  DG K+ A  K+ K  +S+    +F   LE++  +    H N
Sbjct: 7   EDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGH--HPN 64

Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNN------------LSWNTRIRM 616
           I+ L G C   G   +  EY   G L D L     L+ +            L+    ++ 
Sbjct: 65  IINLLGACENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQF 124

Query: 617 ALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           A   A  ++YL E      +HR+  + N+L+ ++LA  ++D GL+
Sbjct: 125 ASDVATGMQYLSE---KQFIHRDLAARNVLVGENLASKIADFGLS 166

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 63.0 bits (153), Expect = 7e-11
 Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 12/138 (8%)

Query: 516 LIGAGMLGSVYRAQ-LPDGKLLAVKKLDK-RASSQQKDDEFLELVNNI---DRIRHANIV 570
            +G G   S Y+A+ +  G L+AVK++   R +S ++++    L   I    R+ H +I+
Sbjct: 7   QLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHII 66

Query: 571 ELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
            + G   E     L  E+ + G++  +L      K  +     I       R L YLHE 
Sbjct: 67  RMLGATCEDSHFNLFVEWMAGGSVSHLLSKYGAFKEAVI----INYTEQLLRGLSYLHE- 121

Query: 631 CQPPIVHRNFKSANILLD 648
               I+HR+ K AN+L+D
Sbjct: 122 --NQIIHRDVKGANLLID 137

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 62.5 bits (152), Expect = 8e-11
 Identities = 36/154 (23%), Positives = 70/154 (45%), Gaps = 12/154 (7%)

Query: 517 IGAGMLGS--VYRAQLPDGKLLAVKKLD-KRASSQQKDDEFLELVNNIDRIRHANIVELK 573
           +G G  G   +YR +  D  L+  K+++  R S +++ D   E +  +  ++H NI+   
Sbjct: 8   LGKGAFGEATLYR-RTEDDSLVVWKEVNLTRLSEKERRDALNE-IVILSLLQHPNIIAYY 65

Query: 574 GYCAEHGQRLLIYEYCSNGTLQDML-HSDDELKNNLSWNTRIRMALGAARALEYLHEICQ 632
            +  +    L+  EY + GTL D +     +L         +        A+ Y+H+   
Sbjct: 66  NHFMDDNTLLIEMEYANGGTLYDKIVRQKGQL---FEEEMVLWYLFQIVSAVSYIHKA-- 120

Query: 633 PPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS 666
             I+HR+ K+ NI L     + + D G++ ++ S
Sbjct: 121 -GILHRDIKTLNIFLTKAGLIKLGDFGISKILGS 153

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 62.6 bits (152), Expect = 9e-11
 Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 9/148 (6%)

Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +GAG  G V+         +A+K L + + S    + FL   N + +++H  +V L    
Sbjct: 14  LGAGQFGEVWMGYYNGHTKVAIKSLKQGSMSP---EAFLAEANLMKQLQHPRLVRLYAVV 70

Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +     +I EY  NG+L D L + + +K  L+ N  I MA   A  + ++    +   +
Sbjct: 71  TQE-PIYIITEYMENGSLVDFLKTPEGIK--LTINKLIDMAAQIAEGMAFIE---RKNYI 124

Query: 637 HRNFKSANILLDDDLAVSVSDCGLAPLI 664
           HR+ ++ANIL+ + L   ++D GLA LI
Sbjct: 125 HRDLRAANILVSETLCCKIADFGLARLI 152

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 64.5 bits (157), Expect = 1e-10
 Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 17/154 (11%)

Query: 496 ARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKL-LAVKKLDKRASSQQKDDEF 554
           ++S TI  +    +S  +EN+I  G  G+ Y+ +     +   VK+++   S    +   
Sbjct: 680 SKSITINDI---LSSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNSIPSSE--- 733

Query: 555 LELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRI 614
              + ++ +++H NIV+L G C       LI+EY     L ++L        NLSW  R 
Sbjct: 734 ---IADMGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVL-------RNLSWERRR 783

Query: 615 RMALGAARALEYLHEICQPPIVHRNFKSANILLD 648
           ++A+G A+AL +LH  C P +V  N     I++D
Sbjct: 784 KIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIID 817

Length = 968

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 62.4 bits (151), Expect = 1e-10
 Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 22/164 (13%)

Query: 515 NLIGAGMLGSVYRAQLP-DG-KLLAVKKLDKRASSQQKDDEF---LELVNNIDRIRHANI 569
           ++IG G  G V +A++  DG ++ A  K  K  +S+    +F   LE++  +    H NI
Sbjct: 1   DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH--HPNI 58

Query: 570 VELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNN------------LSWNTRIRMA 617
           + L G C   G   L  EY  +G L D L     L+ +            LS    +  A
Sbjct: 59  INLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFA 118

Query: 618 LGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
              AR ++YL +      +HR+  + NIL+ ++    ++D GL+
Sbjct: 119 ADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGLS 159

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 29/163 (17%)

Query: 516 LIGAGMLGSVYRAQ---LPD--GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
            +G G  GSV   +   L D  G+++AVKKL    +   +D  F   +  +  ++H NIV
Sbjct: 11  QLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRD--FEREIEILKSLQHDNIV 68

Query: 571 ELKGYCAEHGQR--LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           + KG C   G+R   L+ EY   G+L+D L      K+        R  L   + L Y  
Sbjct: 69  KYKGVCYSAGRRNLRLVMEYLPYGSLRDYLQ-----KH--------RERLDHRKLLLYAS 115

Query: 629 EICQ-------PPIVHRNFKSANILLDDDLAVSVSDCGLAPLI 664
           +IC+          VHR+  + NIL++ +  V + D GL  ++
Sbjct: 116 QICKGMEYLGSKRYVHRDLATRNILVESENRVKIGDFGLTKVL 158

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 8/154 (5%)

Query: 516 LIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKG 574
           ++G G  G V + +    G+++A+KK  +    +      L  V  + ++RH NIV LK 
Sbjct: 8   VVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKE 67

Query: 575 YCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPP 634
                G+  L++EY     L+ +    +     L  +          +A+ Y H      
Sbjct: 68  AFRRKGRLYLVFEYVERTLLELL----EASPGGLPPDAVRSYIWQLLQAIAYCH---SHN 120

Query: 635 IVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
           I+HR+ K  NIL+ +   + + D G A  + +  
Sbjct: 121 IIHRDIKPENILVSESGVLKLCDFGFARALRARP 154

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 61.1 bits (148), Expect = 4e-10
 Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 12/141 (8%)

Query: 535 LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTL 594
           L+AVK L    +   ++D FL+ +  + R+++ NI+ L G C       +I EY  NG L
Sbjct: 46  LVAVKMLRADVTKTARND-FLKEIKIMSRLKNPNIIRLLGVCVSDDPLCMITEYMENGDL 104

Query: 595 -----QDMLHSDDELKNNL---SWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANIL 646
                Q  + S     NN+   S    + MA+  A  ++YL  +     VHR+  + N L
Sbjct: 105 NQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASL---NFVHRDLATRNCL 161

Query: 647 LDDDLAVSVSDCGLAPLISSG 667
           + +   + ++D G++  + SG
Sbjct: 162 VGNHYTIKIADFGMSRNLYSG 182

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 60.5 bits (147), Expect = 4e-10
 Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 8/148 (5%)

Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +GAG  G V+     +   +AVK L K  +   KD  FL     + ++RH  +++L   C
Sbjct: 14  LGAGQFGEVWEGLWNNTTPVAVKTL-KPGTMDPKD--FLAEAQIMKKLRHPKLIQLYAVC 70

Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
                  ++ E    G+L + L         L     I MA   A  + YL        +
Sbjct: 71  TLEEPIYIVTELMKYGSLLEYLQGGA--GRALKLPQLIDMAAQVASGMAYLE---AQNYI 125

Query: 637 HRNFKSANILLDDDLAVSVSDCGLAPLI 664
           HR+  + N+L+ ++    V+D GLA +I
Sbjct: 126 HRDLAARNVLVGENNICKVADFGLARVI 153

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 60.7 bits (148), Expect = 5e-10
 Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 20/159 (12%)

Query: 509 NSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHA 567
             F+    IG G  G VY+A      +++A+K +D   +    +DE  ++   I  +   
Sbjct: 1   ELFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEA----EDEIEDIQQEIQFLSQC 56

Query: 568 NIVELKGY--CAEHGQRL-LIYEYCSNGTLQDMLHS--DDELKNNLSWNTRIRMALGAAR 622
               +  Y      G +L +I EYC  G+  D+L     DE    ++    +R  L    
Sbjct: 57  RSPYITKYYGSFLKGSKLWIIMEYCGGGSCLDLLKPGKLDE--TYIA--FILREVL---L 109

Query: 623 ALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
            LEYLHE  +  I HR+ K+ANILL ++  V ++D G++
Sbjct: 110 GLEYLHE--EGKI-HRDIKAANILLSEEGDVKLADFGVS 145

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 60.7 bits (148), Expect = 5e-10
 Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 34/178 (19%)

Query: 509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNN----IDR 563
           + F    +IG G   +V  A+     K  A+K LDKR   ++K  ++   V      + R
Sbjct: 1   DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKY---VKIEKEVLTR 57

Query: 564 I-RHANIVELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAA 621
           +  H  I++L  Y  +  + L  + EY  NG   ++L     ++   S + +        
Sbjct: 58  LNGHPGIIKLY-YTFQDEENLYFVLEYAPNG---ELLQY---IRKYGSLDEKC------T 104

Query: 622 R--------ALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQ 671
           R        ALEYLH      I+HR+ K  NILLD D+ + ++D G A ++   S  +
Sbjct: 105 RFYAAEILLALEYLHSK---GIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPE 159

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 38/172 (22%)

Query: 517 IGAGMLGSVYRAQ-LPDGKLLAVKK--LDKRASSQQKDDEFLELVNNIDRIRHANIVELK 573
           IG G    VY A  LP+ + +A+K+  L+K  +S    DE  + V  + +  H N+V  K
Sbjct: 9   IGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSV---DELRKEVQAMSQCNHPNVV--K 63

Query: 574 GYCA--EHGQRLLIYEYCSNGTLQDMLHSD------DE------LKNNLSWNTRIRMALG 619
            Y +     +  L+  Y S G+L D++ S       DE      LK  L           
Sbjct: 64  YYTSFVVGDELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVL----------- 112

Query: 620 AARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQ 671
             + LEYLH   Q   +HR+ K+ NILL +D +V ++D G++  ++ G    
Sbjct: 113 --KGLEYLHSNGQ---IHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRT 159

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 60.7 bits (147), Expect = 5e-10
 Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 15/155 (9%)

Query: 516 LIGAGMLGSVYRA-QLPDGKLL----AVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           L+G+G+ G+V++   +P+G  +    A+K +  R S +Q   E  + +  +  + HA IV
Sbjct: 14  LLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDR-SGRQTFQEITDHMLAMGSLDHAYIV 72

Query: 571 ELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
            L G C   G  L L+ +    G+L D +      +++L     +   +  A+ + YL E
Sbjct: 73  RLLGICP--GASLQLVTQLSPLGSLLDHVRQH---RDSLDPQRLLNWCVQIAKGMYYLEE 127

Query: 630 ICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI 664
                +VHRN  + NILL  D  V ++D G+A L+
Sbjct: 128 HR---MVHRNLAARNILLKSDSIVQIADFGVADLL 159

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 60.9 bits (147), Expect = 6e-10
 Identities = 51/158 (32%), Positives = 80/158 (50%), Gaps = 11/158 (6%)

Query: 511 FSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRA-SSQQKDDEFLELVNNIDRIRHAN 568
           F+    IG G  G+VY A+ +   +++A+KK+      S +K  + ++ V  + RI+H N
Sbjct: 27  FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPN 86

Query: 569 IVELKG-YCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYL 627
            +E KG Y  EH    L+ EYC  G+  D+L      K  L       +  GA + L YL
Sbjct: 87  SIEYKGCYLREH-TAWLVMEYCL-GSASDLLEVH---KKPLQEVEIAAITHGALQGLAYL 141

Query: 628 HEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS 665
           H      ++HR+ K+ NILL +   V ++D G A + S
Sbjct: 142 H---SHNMIHRDIKAGNILLTEPGQVKLADFGSASIAS 176

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 60.3 bits (146), Expect = 6e-10
 Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 11/155 (7%)

Query: 514 ENLIGAGMLGSVY--RAQLPDGK--LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
           E +IGAG  G V   R +LP  +   +A+K L    + +Q+ D FL   + + +  H NI
Sbjct: 9   EKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRD-FLSEASIMGQFDHPNI 67

Query: 570 VELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
           + L+G   +    +++ EY  NG+L   L   D      +    + M  G A  ++YL +
Sbjct: 68  IHLEGVVTKSKPVMIVTEYMENGSLDAFLRKHD---GQFTVIQLVGMLRGIASGMKYLSD 124

Query: 630 ICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI 664
           +     VHR+  + NIL++ +L   VSD GL+ ++
Sbjct: 125 M---GYVHRDLAARNILVNSNLVCKVSDFGLSRVL 156

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 60.4 bits (147), Expect = 6e-10
 Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 10/160 (6%)

Query: 517 IGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           IG G  G V++A+    G+ +A+KK+  R       ++ L  +  +   +H  +V+L   
Sbjct: 8   IGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLD- 66

Query: 576 CAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPP 634
              HG    L+ EY     L ++L  ++         + +RM L   + + Y+H      
Sbjct: 67  VFPHGSGFVLVMEYMP-SDLSEVLRDEERPLPEAQVKSYMRMLL---KGVAYMHAN---G 119

Query: 635 IVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSH 674
           I+HR+ K AN+L+  D  + ++D GLA L S       SH
Sbjct: 120 IMHRDLKPANLLISADGVLKIADFGLARLFSEEEPRLYSH 159

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 60.6 bits (147), Expect = 7e-10
 Identities = 51/170 (30%), Positives = 74/170 (43%), Gaps = 18/170 (10%)

Query: 511 FSQENL-----IGAGMLGSVYRAQL-----PDGKL-LAVKKLDKRASSQQKDDEFLELVN 559
           F + NL     +GAG  G V  A        D  + +AVK L   A S +++    EL  
Sbjct: 32  FPRNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKI 91

Query: 560 NIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALG 619
                 H NIV L G C   G  L+I EYC  G L + L    E  + L+    +  +  
Sbjct: 92  MSHLGNHENIVNLLGACTIGGPILVITEYCCYGDLLNFLRRKRE--SFLTLEDLLSFSYQ 149

Query: 620 AARALEYL-HEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
            A+ + +L  + C    +HR+  + N+LL     V + D GLA  I + S
Sbjct: 150 VAKGMAFLASKNC----IHRDLAARNVLLTHGKIVKICDFGLARDIMNDS 195

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

 Score = 59.7 bits (144), Expect = 8e-10
 Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 16/154 (10%)

Query: 517 IGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFL--ELVNNIDRIRHANIVELK 573
           +G+G  G VY+A+ L  G+L AVK +      +  DD  L  + +  +   +H NIV   
Sbjct: 17  VGSGTYGDVYKARNLHTGELAAVKII----KLEPGDDFSLIQQEIFMVKECKHCNIVAYF 72

Query: 574 GYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKN-NLSWNTRIRMALGAARALEYLHEICQ 632
           G      +  +  EYC  G+LQD+ H    L    +++  R  +     + L YLH   +
Sbjct: 73  GSYLSREKLWICMEYCGGGSLQDIYHVTGPLSELQIAYVCRETL-----QGLAYLHSKGK 127

Query: 633 PPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS 666
              +HR+ K ANILL D+  V ++D G+A  I++
Sbjct: 128 ---MHRDIKGANILLTDNGDVKLADFGVAAKITA 158

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5 also facilitates Wnt signaling in B cells, and may therefore be implicated in the control of cell fate, proliferation, and polarity. Length = 267

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.0 bits (148), Expect = 1e-09
 Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 2/85 (2%)

Query: 154 MSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTL 213
           + L+N  L G IP+    L  L +++LS N++ G +PPSL +++ L  L L  N  +G++
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 214 -DVLQDL-PLRDLNIENNLFSGPIP 236
            + L  L  LR LN+  N  SG +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 41/149 (27%), Positives = 64/149 (42%), Gaps = 11/149 (7%)

Query: 516 LIGAGMLGSVYRAQL--PDGKLL--AVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
            +G G  G V R +     GK++  AVK L K        D+FL+    +  + H N++ 
Sbjct: 2   KLGDGSFGVVRRGEWSTSGGKVIPVAVKCL-KSDKLSDIMDDFLKEAAIMHSLDHENLIR 60

Query: 572 LKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEIC 631
           L G    H   +++ E    G+L D L    +   +   +T    A+  A  + YL    
Sbjct: 61  LYGVVLTH-PLMMVTELAPLGSLLDRLR--KDALGHFLISTLCDYAVQIANGMRYLE--- 114

Query: 632 QPPIVHRNFKSANILLDDDLAVSVSDCGL 660
               +HR+  + NILL  D  V + D GL
Sbjct: 115 SKRFIHRDLAARNILLASDDKVKIGDFGL 143

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 59.4 bits (144), Expect = 1e-09
 Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 5/161 (3%)

Query: 508 TNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKD-DEFLELVNNIDRIR 565
             +F  E  IG G    VY+A  L DG+++A+KK+        K   + L+ ++ + ++ 
Sbjct: 1   LGNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLD 60

Query: 566 HANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALE 625
           H N+++      E+ +  ++ E    G L  M+    + K  +   T  +  +    ALE
Sbjct: 61  HPNVIKYLASFIENNELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALE 120

Query: 626 YLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS 666
           ++H      I+HR+ K AN+ +     V + D GL    SS
Sbjct: 121 HMH---SKRIMHRDIKPANVFITATGVVKLGDLGLGRFFSS 158

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 42/156 (26%), Positives = 67/156 (42%), Gaps = 13/156 (8%)

Query: 517 IGAGMLGSVYRA--QLPDGKLL--AVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVEL 572
           +G G  GSV +    +  GK +  AVK L +   +  K  EFL   + + ++ H  IV L
Sbjct: 3   LGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKK-EFLREASVMAQLDHPCIVRL 61

Query: 573 KGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQ 632
            G C      +L+ E    G L   L    E+  +        +A   A  + YL     
Sbjct: 62  IGVCKGE-PLMLVMELAPLGPLLKYLKKRREIPVS----DLKELAHQVAMGMAYLESK-- 114

Query: 633 PPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
              VHR+  + N+LL +     +SD G++  + +GS
Sbjct: 115 -HFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGS 149

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 59.1 bits (143), Expect = 1e-09
 Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 9/145 (6%)

Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +G G  G V   +      +A+K + + + S+   DEF+E    + ++ H  +V+L G C
Sbjct: 12  LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSE---DEFIEEAKVMMKLSHEKLVQLYGVC 68

Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +     ++ EY SNG L + L    E       +  + M       + YL        +
Sbjct: 69  TKQRPIYIVTEYMSNGCLLNYLR---EHGKRFQPSQLLEMCKDVCEGMAYLE---SKQFI 122

Query: 637 HRNFKSANILLDDDLAVSVSDCGLA 661
           HR+  + N L+DD   V VSD GL+
Sbjct: 123 HRDLAARNCLVDDQGCVKVSDFGLS 147

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 59.3 bits (143), Expect = 1e-09
 Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 8/148 (5%)

Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +GAG  G V+     +   +AVK L     S Q    FLE  N +  ++H  +V L    
Sbjct: 14  LGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQA---FLEEANLMKTLQHDKLVRLYAVV 70

Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +     +I EY + G+L D L SD+  K  L     I  +   A  + Y+    +   +
Sbjct: 71  TKEEPIYIITEYMAKGSLLDFLKSDEGGKVLLP--KLIDFSAQIAEGMAYIE---RKNYI 125

Query: 637 HRNFKSANILLDDDLAVSVSDCGLAPLI 664
           HR+ ++AN+L+ + L   ++D GLA +I
Sbjct: 126 HRDLRAANVLVSESLMCKIADFGLARVI 153

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 46/171 (26%), Positives = 69/171 (40%), Gaps = 32/171 (18%)

Query: 508 TNSFSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR- 565
           T  F    +IG G  G VY+A     G+L+A+K +D         DE  E+    + +R 
Sbjct: 5   TGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIE------DEEEEIKEEYNILRK 58

Query: 566 ---HANIVE------LKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRM 616
              H NI         K       Q  L+ E C  G++ D++      K       R++ 
Sbjct: 59  YSNHPNIATFYGAFIKKNPPGNDDQLWLVMELCGGGSVTDLV------KGLRKKGKRLKE 112

Query: 617 AL------GAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
                      R L YLHE     ++HR+ K  NILL  +  V + D G++
Sbjct: 113 EWIAYILRETLRGLAYLHE---NKVIHRDIKGQNILLTKNAEVKLVDFGVS 160

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 59.3 bits (143), Expect = 2e-09
 Identities = 48/158 (30%), Positives = 81/158 (51%), Gaps = 11/158 (6%)

Query: 511 FSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRA-SSQQKDDEFLELVNNIDRIRHAN 568
           FS    IG G  G+VY A+ + + +++A+KK+      S +K  + ++ V  + ++RH N
Sbjct: 17  FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 76

Query: 569 IVELKG-YCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYL 627
            ++ +G Y  EH    L+ EYC  G+  D+L      K  L       +  GA + L YL
Sbjct: 77  TIQYRGCYLREH-TAWLVMEYCL-GSASDLLEVH---KKPLQEVEIAAVTHGALQGLAYL 131

Query: 628 HEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS 665
           H      ++HR+ K+ NILL +   V + D G A +++
Sbjct: 132 H---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMA 166

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 58.9 bits (142), Expect = 2e-09
 Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 9/156 (5%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
            S      +G G  G V+         +AVK L     S +    FLE    + ++RH  
Sbjct: 6   ESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTMSPES---FLEEAQIMKKLRHDK 62

Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           +V+L    +E     ++ EY S G+L D L   +     L     + MA   A  + Y+ 
Sbjct: 63  LVQLYAVVSEE-PIYIVTEYMSKGSLLDFLKDGE--GRALKLPNLVDMAAQVAAGMAYIE 119

Query: 629 EICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI 664
            +     +HR+ +SANIL+ D L   ++D GLA LI
Sbjct: 120 RM---NYIHRDLRSANILVGDGLVCKIADFGLARLI 152

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 17/160 (10%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNID---RI 564
            ++ +  L+G G  G VY     D G+ LAVK++     S +   E   L   I     +
Sbjct: 2   TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNL 61

Query: 565 RHANIVELKGYCAEHGQRLLIY-EYCSNGTLQDMLHSDDELKNNLSWNTR--IRMALGAA 621
           +H  IV+  G C    + L I+ EY   G+++D L +   L   +   TR   R  L   
Sbjct: 62  QHERIVQYYG-CLRDDETLSIFMEYMPGGSVKDQLKAYGALTETV---TRKYTRQIL--- 114

Query: 622 RALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
             +EYLH      IVHR+ K ANIL D    V + D G +
Sbjct: 115 EGVEYLHS---NMIVHRDIKGANILRDSAGNVKLGDFGAS 151

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 59.3 bits (143), Expect = 2e-09
 Identities = 48/152 (31%), Positives = 75/152 (49%), Gaps = 11/152 (7%)

Query: 517 IGAGMLGSVYRA-QLPDGKLLAVKKLDKRA-SSQQKDDEFLELVNNIDRIRHANIVELKG 574
           IG G  G+VY A      +++AVKK+      + +K  + ++ V  + +++H N +E KG
Sbjct: 29  IGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKG 88

Query: 575 -YCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQP 633
            Y  EH    L+ EYC  G+  D+L      K  L       +  GA + L YLH     
Sbjct: 89  CYLKEH-TAWLVMEYCL-GSASDLLEVH---KKPLQEVEIAAITHGALQGLAYLHSHN-- 141

Query: 634 PIVHRNFKSANILLDDDLAVSVSDCGLAPLIS 665
            ++HR+ K+ NILL +   V ++D G A   S
Sbjct: 142 -MIHRDIKAGNILLTEPGQVKLADFGSASKSS 172

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 58.1 bits (140), Expect = 3e-09
 Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 19/155 (12%)

Query: 517 IGAGMLGSV----YRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVEL 572
           IG G  G V    YR     G  +AVK +   A++Q     FL   + + ++RH+N+V+L
Sbjct: 14  IGKGEFGDVMLGDYR-----GNKVAVKCIKNDATAQA----FLAEASVMTQLRHSNLVQL 64

Query: 573 KGYCAE-HGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEIC 631
            G   E  G   ++ EY + G+L D L S    ++ L  +  ++ +L    A+EYL    
Sbjct: 65  LGVIVEEKGGLYIVTEYMAKGSLVDYLRSRG--RSVLGGDCLLKFSLDVCEAMEYLE--- 119

Query: 632 QPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS 666
               VHR+  + N+L+ +D    VSD GL    SS
Sbjct: 120 ANNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASS 154

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 58.1 bits (140), Expect = 4e-09
 Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 22/177 (12%)

Query: 517 IGAGMLGSVYRAQL-----PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +G    G +Y+  L        +L+A+K L K  ++ Q+  EF +  + +  + H NIV 
Sbjct: 13  LGECAFGKIYKGHLYLPGMDHAQLVAIKTL-KDINNPQQWGEFQQEASLMAELHHPNIVC 71

Query: 572 LKGYCAEHGQRLLIYEYCSNGTLQDML-----HSD-----DE---LKNNLSWNTRIRMAL 618
           L G   +     +++EY + G L + L     HSD     DE   +K++L     + +A+
Sbjct: 72  LLGVVTQEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAI 131

Query: 619 GAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSHN 675
             A  +EYL        VH++  + NIL+ + L V +SD GL+  I S    +V   
Sbjct: 132 QIAAGMEYL---SSHFFVHKDLAARNILIGEQLHVKISDLGLSREIYSADYYRVQPK 185

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 58.1 bits (140), Expect = 4e-09
 Identities = 47/168 (27%), Positives = 74/168 (44%), Gaps = 18/168 (10%)

Query: 509 NSFSQENLIGAGMLGSVYRAQL-PDGKLL--AVKKLDKRASSQQKDDEFLELVNNIDRIR 565
           N    +++IG G  G V +A++  DG  +  A+K++ + AS     D   EL        
Sbjct: 7   NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 66

Query: 566 HANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNN------------LSWNTR 613
           H NI+ L G C   G   L  EY  +G L D L     L+ +            LS    
Sbjct: 67  HPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQL 126

Query: 614 IRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           +  A   AR ++YL    Q   +HR+  + NIL+ ++    ++D GL+
Sbjct: 127 LHFAADVARGMDYL---SQKQFIHRDLAARNILVGENYVAKIADFGLS 171

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 57.3 bits (138), Expect = 5e-09
 Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 11/151 (7%)

Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           IG G  G+V + +   G+ +AVK +    ++Q     FLE    + ++ H N+V L G  
Sbjct: 14  IGEGEFGAVLQGEYT-GQKVAVKNIKCDVTAQA----FLEETAVMTKLHHKNLVRLLGVI 68

Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
             +G  +++ E  S G L + L +      ++     ++ +L  A  +EYL       +V
Sbjct: 69  LHNGLYIVM-ELMSKGNLVNFLRTRGRALVSVI--QLLQFSLDVAEGMEYLE---SKKLV 122

Query: 637 HRNFKSANILLDDDLAVSVSDCGLAPLISSG 667
           HR+  + NIL+ +D    VSD GLA + S G
Sbjct: 123 HRDLAARNILVSEDGVAKVSDFGLARVGSMG 153

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 57.3 bits (139), Expect = 6e-09
 Identities = 36/151 (23%), Positives = 69/151 (45%), Gaps = 8/151 (5%)

Query: 517 IGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           IG G  G VY+A+    G+++A+KK+  R  S+      L  +  +  + H NI++L   
Sbjct: 7   IGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDV 66

Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
               G   L++E+      + +      L  +L  +   ++     + L + H      I
Sbjct: 67  FRHKGDLYLVFEFMDTDLYKLIKDRQRGLPESLIKSYLYQLL----QGLAFCH---SHGI 119

Query: 636 VHRNFKSANILLDDDLAVSVSDCGLAPLISS 666
           +HR+ K  N+L++ +  + ++D GLA    S
Sbjct: 120 LHRDLKPENLLINTEGVLKLADFGLARSFGS 150

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

 Score = 57.3 bits (138), Expect = 7e-09
 Identities = 50/178 (28%), Positives = 80/178 (44%), Gaps = 32/178 (17%)

Query: 511 FSQENLI-----GAGMLGSVYRA-------QLPDGKL-LAVKKLDKRASSQQKDDEF--L 555
           F ++ L+     G G  G V RA         PD  + +AVK L   A+ +   D    +
Sbjct: 9   FPRDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEM 68

Query: 556 ELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHS------DDEL----- 604
           EL+  I +  H NI+ L G C + G   +I EY + G L++ L +      D        
Sbjct: 69  ELMKLIGK--HKNIINLLGVCTQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKV 126

Query: 605 -KNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
            +  LS+   +  A   AR +EYL        +HR+  + N+L+ +D  + ++D GLA
Sbjct: 127 PEEQLSFKDLVSCAYQVARGMEYLE---SRRCIHRDLAARNVLVTEDNVMKIADFGLA 181

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 56.5 bits (136), Expect = 8e-09
 Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 21/159 (13%)

Query: 517 IGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELK-G 574
           +G G  G V   +   DGK   +KKL+ R +S+++     +    + +++H NIV  +  
Sbjct: 8   VGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRES 67

Query: 575 YCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNL-------SWNTRIRMALGAARALEYL 627
           +  E G   ++  +C  G   D+ H   E K  L        W  +I MAL      +YL
Sbjct: 68  WEGEDGLLYIVMGFCEGG---DLYHKLKEQKGKLLPENQVVEWFVQIAMAL------QYL 118

Query: 628 HEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS 666
           HE     I+HR+ K+ N+ L     + V D G+A ++ +
Sbjct: 119 HE---KHILHRDLKTQNVFLTRTNIIKVGDLGIARVLEN 154

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

 Score = 56.6 bits (136), Expect = 9e-09
 Identities = 42/150 (28%), Positives = 73/150 (48%), Gaps = 8/150 (5%)

Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           IG+G  G VY+A+  +   LA  K+ K    +       E++   D  +H+NIV   G  
Sbjct: 17  IGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKD-CKHSNIVAYFGSY 75

Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
               +  +  E+C  G+LQD+ H    L       +  ++A  +   L+ L+ +     +
Sbjct: 76  LRRDKLWICMEFCGGGSLQDIYHVTGPL-------SESQIAYVSRETLQGLYYLHSKGKM 128

Query: 637 HRNFKSANILLDDDLAVSVSDCGLAPLISS 666
           HR+ K ANILL D+  V ++D G++  I++
Sbjct: 129 HRDIKGANILLTDNGHVKLADFGVSAQITA 158

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. MAP4K3 is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. mTOR regulates ribosome biogenesis and protein translation, and is frequently deregulated in cancer. Length = 267

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 56.8 bits (138), Expect = 9e-09
 Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 22/158 (13%)

Query: 517 IGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNI---DRIRHANIVEL 572
           IG G  G VY+A     GK +A+KK+  R  +++       ++N I      +H NIV+ 
Sbjct: 27  IGEGASGEVYKATDRATGKEVAIKKMRLRKQNKEL------IINEILIMKDCKHPNIVDY 80

Query: 573 KGYCAEHGQRL-LIYEYCSNGTLQDML-HSDDELKNNLSWNTRI-RMALGAARALEYLHE 629
                  G  L ++ EY   G+L D++  +   +        +I  +     + LEYLH 
Sbjct: 81  YD-SYLVGDELWVVMEYMDGGSLTDIITQNFVRMNE-----PQIAYVCREVLQGLEYLH- 133

Query: 630 ICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG 667
                ++HR+ KS NILL  D +V ++D G A  ++  
Sbjct: 134 --SQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKE 169

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 48/160 (30%), Positives = 72/160 (45%), Gaps = 23/160 (14%)

Query: 515 NLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQ---QKDDEFLELVNNIDRIRHANIV 570
             IG G  G+VY+A+ L  G+ +A+KK+    S +         + L+  ++   H NIV
Sbjct: 5   AEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIV 64

Query: 571 ELKGYCAEHGQRL-------LIYEYCSNGTLQDMLHS--DDELKNNLSWNTRIRMALGAA 621
            L   C  HG R        L++E+      QD L +      K  L   T   +     
Sbjct: 65  RLLDVC--HGPRTDRELKLTLVFEHVD----QD-LATYLSKCPKPGLPPETIKDLMRQLL 117

Query: 622 RALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           R +++LH      IVHR+ K  NIL+  D  V ++D GLA
Sbjct: 118 RGVDFLHSHR---IVHRDLKPQNILVTSDGQVKIADFGLA 154

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 10/161 (6%)

Query: 516 LIGAGMLGSVYRA--QLPDGKLLAVK-KLDKRASSQQKDDEFLELVNNIDRIRHANIVEL 572
            IG G  G VY+     P+ + +AV  K  K  +S    ++FL+    + +  H +IV+L
Sbjct: 13  CIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKL 72

Query: 573 KGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQ 632
            G   E+    ++ E    G L+  L  +   K +L   + I  +   + AL YL     
Sbjct: 73  IGVITEN-PVWIVMELAPLGELRSYLQVN---KYSLDLASLILYSYQLSTALAYLESK-- 126

Query: 633 PPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVS 673
              VHR+  + N+L+     V + D GL+  +   S  + S
Sbjct: 127 -RFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESYYKAS 166

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 56.0 bits (136), Expect = 1e-08
 Identities = 52/157 (33%), Positives = 72/157 (45%), Gaps = 29/157 (18%)

Query: 517 IGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNI-DRIRHANIVELKG 574
           +G G  G V   +  D GKL A+K L K+   ++K+ E      NI  RI H  IV+L  
Sbjct: 1   LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKL-- 58

Query: 575 YCAEHGQ-RL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR--------AL 624
           + A   + +L L+ EY   G L   L                R +   AR        AL
Sbjct: 59  HYAFQTEEKLYLVLEYAPGGELFSHLSK------------EGRFSEERARFYAAEIVLAL 106

Query: 625 EYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           EYLH +    I++R+ K  NILLD D  + ++D GLA
Sbjct: 107 EYLHSL---GIIYRDLKPENILLDADGHIKLTDFGLA 140

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|133195 cd05064, PTKc_EphR_A10, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

 Score = 56.5 bits (136), Expect = 1e-08
 Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 13/158 (8%)

Query: 510 SFSQENLIGAGMLGSVYRA--QLPDGK--LLAVKKLDKRASSQQKDDEFLELVNNIDRIR 565
           S   E ++G G  G + R   +LP  +   +A+  L    S +Q+   FL     + +  
Sbjct: 6   SIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRG-FLAEALTLGQFD 64

Query: 566 HANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALE 625
           H+NIV L+G        +++ EY SNG L   L   +     L     + M  G A  ++
Sbjct: 65  HSNIVRLEGVITRGNTMMIVTEYMSNGALDSFLRKHE---GQLVAGQLMGMLPGLASGMK 121

Query: 626 YLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPL 663
           YL E+     VH+   +  +L++ DL   +S  G   L
Sbjct: 122 YLSEM---GYVHKGLAAHKVLVNSDLVCKIS--GFRRL 154

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). EphA10, which contains an inactive tyr kinase domain, may function to attenuate signals of co-clustered active receptors. EphA10 is mainly expressed in the testis. Ephrin/EphR interaction results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173646 cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

 Score = 56.5 bits (136), Expect = 1e-08
 Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 10/150 (6%)

Query: 517 IGAGMLGSVYRAQLPDG---KLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELK 573
           IG G  G V   ++  G     + VK+L   AS Q++  +FLE       ++H+N+++  
Sbjct: 3   IGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQM-KFLEEAQPYRSLQHSNLLQCL 61

Query: 574 GYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRI--RMALGAARALEYLHEIC 631
           G C E    LL+ E+C  G L+  L S       ++ +     RMA   A  L +LH   
Sbjct: 62  GQCTEVTPYLLVMEFCPLGDLKGYLRS-CRKAELMTPDPTTLQRMACEIALGLLHLH--- 117

Query: 632 QPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           +   +H +    N LL  DL V + D GL+
Sbjct: 118 KNNFIHSDLALRNCLLTADLTVKIGDYGLS 147

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells. Aatyk1 has been implicated in neural differentiation, and is a regulator of the Na-K-2Cl cotransporter, a membrane protein involved in cell proliferation and survival, epithelial transport, and blood pressure control. The function of Aatyk3 is still unknown. Length = 269

>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine Kinase, Tyro3

 Score = 56.5 bits (136), Expect = 1e-08
 Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 15/169 (8%)

Query: 511 FSQENLIGAGMLGSVYRAQLP----DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRH 566
           F+   ++G G  GSV  AQL       + +AVK L     S    +EFL     +    H
Sbjct: 1   FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDH 60

Query: 567 ANIVELKGYC--AEHGQRL----LIYEYCSNGTLQDMLHSDDELKN--NLSWNTRIRMAL 618
            N+++L G    +    RL    +I  +  +G L   L      +    L   T +R  +
Sbjct: 61  PNVIKLIGVSLRSRAKGRLPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMI 120

Query: 619 GAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG 667
             A  +EYL        +HR+  + N +L++++ V V+D GL+  I SG
Sbjct: 121 DIASGMEYLS---SKNFIHRDLAARNCMLNENMTVCVADFGLSKKIYSG 166

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic factor. It is also expressed in osteoclasts and has a role in bone resorption. Length = 273

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 56.2 bits (135), Expect = 1e-08
 Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 9/155 (5%)

Query: 510 SFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
           S   E  +G G  G V+         +A+K L     S +    FL+    + ++RH  +
Sbjct: 7   SLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLRHEKL 63

Query: 570 VELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
           V+L    +E     ++ EY S G+L D L    E+   L     + MA   A  + Y+  
Sbjct: 64  VQLYAVVSEE-PIYIVTEYMSKGSLLDFLKG--EMGKYLRLPQLVDMAAQIASGMAYVER 120

Query: 630 ICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI 664
           +     VHR+ ++ANIL+ ++L   V+D GLA LI
Sbjct: 121 M---NYVHRDLRAANILVGENLVCKVADFGLARLI 152

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 57.3 bits (138), Expect = 1e-08
 Identities = 43/130 (33%), Positives = 72/130 (55%), Gaps = 5/130 (3%)

Query: 103 SSIRVIDLSNNHIGGSIPSI-LPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLL 161
           S+++ +DLS+N I      +     ++N  LS N  S  +P  L+ L+ L ++ L+ N +
Sbjct: 140 SNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKI 198

Query: 162 SGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP- 220
           S ++P   + L+ L  LDLS+N++  EL  SL NL  L+ L L NN+L    + + +L  
Sbjct: 199 S-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSN 256

Query: 221 LRDLNIENNL 230
           L  L++ NN 
Sbjct: 257 LETLDLSNNQ 266

Length = 394

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 12/152 (7%)

Query: 515 NLIGAGMLGSVYRAQL--PDGKLL--AVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
            +IG G  G VY   L   DG+ +  AVK L+ R +  ++ ++FL+    +    H N++
Sbjct: 1   RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLN-RITDLEEVEQFLKEGIIMKDFSHPNVL 59

Query: 571 ELKGYC-AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
            L G C    G  L++  Y  +G L++ + S+    +N +    I   L  A+ +EYL  
Sbjct: 60  SLLGICLPSEGSPLVVLPYMKHGDLRNFIRSE---THNPTVKDLIGFGLQVAKGMEYL-- 114

Query: 630 ICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
                 VHR+  + N +LD+   V V+D GLA
Sbjct: 115 -ASKKFVHRDLAARNCMLDESFTVKVADFGLA 145

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 42/146 (28%), Positives = 74/146 (50%), Gaps = 9/146 (6%)

Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +G G  G VY+AQ  +  L A  K+ +  S ++ +D  +E ++ +   +H NIV L    
Sbjct: 13  LGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVE-IDILSECKHPNIVGLYEAY 71

Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIR-MALGAARALEYLHEICQPPI 635
               +  ++ E+C  G L  ++    EL+  L+   +IR +      AL +LH      +
Sbjct: 72  FYENKLWILIEFCDGGALDSIM---LELERGLT-EPQIRYVCRQMLEALNFLHS---HKV 124

Query: 636 VHRNFKSANILLDDDLAVSVSDCGLA 661
           +HR+ K+ NILL  D  V ++D G++
Sbjct: 125 IHRDLKAGNILLTLDGDVKLADFGVS 150

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

 Score = 55.7 bits (134), Expect = 3e-08
 Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 11/140 (7%)

Query: 535 LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTL 594
           L+AVK L + A+   ++D FL+ +  + R++  NI+ L   C       +I EY  NG L
Sbjct: 48  LVAVKMLREDANKNARND-FLKEIKIMSRLKDPNIIRLLAVCITSDPLCMITEYMENGDL 106

Query: 595 QDML-------HSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILL 647
              L        ++      +S++T I MA   A  ++YL  +     VHR+  + N L+
Sbjct: 107 NQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSL---NFVHRDLATRNCLV 163

Query: 648 DDDLAVSVSDCGLAPLISSG 667
             +  + ++D G++  + SG
Sbjct: 164 GKNYTIKIADFGMSRNLYSG 183

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues with the highest levels found in skeletal muscle, skin, kidney and lung. It is important in cell proliferation and development. Mice, with a deletion of DDR2, suffer from dwarfism and delayed healing of epidermal wounds. DDR2 also contributes to collagen (type I) regulation by inhibiting fibrillogenesis and altering the morphology of collagen fibers. It is also expressed in immature dendritic cells (DCs), where it plays a role in DC activation and function. Length = 296

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 19/160 (11%)

Query: 517 IGAGMLGSVYRAQ-LPDG---KL-LAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +G+G  G+VY+   +P+G   K+ +A+K L +  +S + + E L+    +  + H ++V 
Sbjct: 15  LGSGAFGTVYKGVWIPEGEKVKIPVAIKVL-REETSPKANKEILDEAYVMASVDHPHVVR 73

Query: 572 LKGYCAEHGQRLLIYEYCSNGTLQDMLHSD-DELKNN--LSWNTRIRMALGAARALEYLH 628
           L G C    Q  LI +    G L D + +  D + +   L+W  +I      A+ + YL 
Sbjct: 74  LLGICLSS-QVQLITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQI------AKGMSYLE 126

Query: 629 EICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
           E     +VHR+  + N+L+     V ++D GLA L+    
Sbjct: 127 E---KRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDE 163

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

 Score = 55.4 bits (133), Expect = 3e-08
 Identities = 55/180 (30%), Positives = 85/180 (47%), Gaps = 27/180 (15%)

Query: 501 IASLQQYTNSFSQENLIGAGMLGSVYR-AQLPDGKLLAVKKLDKRASSQQKDDEFLELVN 559
           + SL   T+++     IG G  G VY+     DG L AVK LD  +      DE +E   
Sbjct: 14  LESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDV----DEEIEAEY 69

Query: 560 NIDRI--RHANIVELKG--YCAEH---GQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNT 612
           NI +    H N+V+  G  Y A+    GQ  L+ E C+ G++ +++      K  L    
Sbjct: 70  NILQSLPNHPNVVKFYGMFYKADKLVGGQLWLVLELCNGGSVTELV------KGLLICGQ 123

Query: 613 RIRMAL------GAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS 666
           R+  A+      GA   L++LH      I+HR+ K  NILL  +  V + D G++  ++S
Sbjct: 124 RLDEAMISYILYGALLGLQHLH---NNRIIHRDVKGNNILLTTEGGVKLVDFGVSAQLTS 180

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also present in the brain and testis. The human class IIIB myosin gene maps to a region that overlaps the locus for Bardet-Biedl syndrome, which is characterized by dysmorphic extremities, retinal dystrophy, obesity, male hypogenitalism, and renal abnormalities. Length = 291

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 55.0 bits (132), Expect = 3e-08
 Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 8/146 (5%)

Query: 517 IGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           IG G  G V+  +L  D   +AVK   +      K  +FL+    + +  H NIV L G 
Sbjct: 3   IGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKA-KFLQEARILKQYSHPNIVRLIGV 61

Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
           C +     ++ E    G     L ++      L     I+M   AA  +EYL        
Sbjct: 62  CTQKQPIYIVMELVQGGDFLTFLRTEGP---RLKVKELIQMVENAAAGMEYLESKH---C 115

Query: 636 VHRNFKSANILLDDDLAVSVSDCGLA 661
           +HR+  + N L+ +   + +SD G++
Sbjct: 116 IHRDLAARNCLVTEKNVLKISDFGMS 141

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 55.0 bits (132), Expect = 3e-08
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 7/146 (4%)

Query: 516 LIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           L+G G  G V++  L D   +AVK   K    Q+   +FL     + +  H NIV+L G 
Sbjct: 2   LLGKGNFGEVFKGTLKDKTPVAVKTC-KEDLPQELKIKFLSEARILKQYDHPNIVKLIGV 60

Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
           C +     ++ E    G   D L    + K+ L     ++ AL AA  + YL        
Sbjct: 61  CTQRQPIYIVMELVPGG---DFLSFLRKKKDELKTKQLVKFALDAAAGMAYLE---SKNC 114

Query: 636 VHRNFKSANILLDDDLAVSVSDCGLA 661
           +HR+  + N L+ ++  + +SD G++
Sbjct: 115 IHRDLAARNCLVGENNVLKISDFGMS 140

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 55.3 bits (133), Expect = 3e-08
 Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 13/138 (9%)

Query: 533 GKLLAVKKLDKRASSQQKDD--EFLELVNNIDRIRHANIVELKGYCAEHGQR--LLIYEY 588
           G+ +AVK L   +      D  + +E++ N+    H NIV+ KG C E G     LI E+
Sbjct: 33  GEQVAVKSLKPESGGNHIADLKKEIEILRNL---YHENIVKYKGICTEDGGNGIKLIMEF 89

Query: 589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLD 648
             +G+L++ L  +   KN ++   +++ A+   + ++YL        VHR+  + N+L++
Sbjct: 90  LPSGSLKEYLPRN---KNKINLKQQLKYAVQICKGMDYLG---SRQYVHRDLAARNVLVE 143

Query: 649 DDLAVSVSDCGLAPLISS 666
            +  V + D GL   I +
Sbjct: 144 SEHQVKIGDFGLTKAIET 161

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 54.9 bits (133), Expect = 3e-08
 Identities = 38/157 (24%), Positives = 72/157 (45%), Gaps = 18/157 (11%)

Query: 517 IGAGMLGSVYRAQL-PDGKLLAVKKL---DKRASSQQKDDEFLELVNNIDRIRHANIVEL 572
           +G G  G VY+ +  P GK+ A+KK+         +Q   E L+    +       +V+ 
Sbjct: 9   LGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRE-LK---TLRSCESPYVVKC 64

Query: 573 KGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRI--RMALGAARALEYLHEI 630
            G   + G+  ++ EY   G+L D+L      K        +   +A    + L+YLH  
Sbjct: 65  YGAFYKEGEISIVLEYMDGGSLADLL------KKVGKIPEPVLAYIARQILKGLDYLHTK 118

Query: 631 CQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG 667
               I+HR+ K +N+L++    V ++D G++ ++ + 
Sbjct: 119 RH--IIHRDIKPSNLLINSKGEVKIADFGISKVLENT 153

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 19/139 (13%)

Query: 517 IGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNID---RIRHANIVEL 572
           +GAG  G V +    P GK++AVK        +  +    +++  +D   +     IV  
Sbjct: 9   LGAGNSGVVSKVLHRPTGKIMAVK----TIRLEINEAIQKQILRELDILHKCNSPYIVGF 64

Query: 573 KGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSW-NTRI--RMALGAARALEYLHE 629
            G    +G   +  EY   G+L      D  LK        RI  ++A+   + L YLHE
Sbjct: 65  YGAFYNNGDISICMEYMDGGSL------DKILKEVQGRIPERILGKIAVAVLKGLTYLHE 118

Query: 630 ICQPPIVHRNFKSANILLD 648
             +  I+HR+ K +NIL++
Sbjct: 119 --KHKIIHRDVKPSNILVN 135

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 54.8 bits (132), Expect = 4e-08
 Identities = 48/170 (28%), Positives = 86/170 (50%), Gaps = 29/170 (17%)

Query: 511 FSQENLIGAGMLGSVYRA-QLPDGKLLAVKKL-----DKRASSQQKDDEFLELVNNIDRI 564
           + +  LIG G  G+VYR   +P G+++A+K +     D   S  Q++   L       ++
Sbjct: 3   YQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLS------QL 56

Query: 565 RHA---NIVELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSD--DELKNNLSWNTRIRMAL 618
           R +   NI +  G     G RL +I EY   G+++ ++ +    E   ++     IR  L
Sbjct: 57  RQSQPPNITKYYG-SYLKGPRLWIIMEYAEGGSVRTLMKAGPIAEKYISVI----IREVL 111

Query: 619 GAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
               AL+Y+H++    ++HR+ K+ANIL+ +   V + D G+A L++  S
Sbjct: 112 ---VALKYIHKV---GVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNS 155

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

 Score = 54.6 bits (131), Expect = 4e-08
 Identities = 45/147 (30%), Positives = 78/147 (53%), Gaps = 11/147 (7%)

Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVEL-KGY 575
           +G G  G VY+AQ  +  +LA  K+    S ++ +D  +E ++ +    H NIV+L   +
Sbjct: 13  LGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVE-IDILASCDHPNIVKLLDAF 71

Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAA-RALEYLHEICQPP 634
             E+   +LI E+C+ G +  ++    EL+  L+   +IR+       AL YLHE     
Sbjct: 72  YYENNLWILI-EFCAGGAVDAVML---ELERPLT-EPQIRVVCKQTLEALNYLHE---NK 123

Query: 635 IVHRNFKSANILLDDDLAVSVSDCGLA 661
           I+HR+ K+ NIL   D  + ++D G++
Sbjct: 124 IIHRDLKAGNILFTLDGDIKLADFGVS 150

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. Length = 282

>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

 Score = 54.4 bits (131), Expect = 5e-08
 Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 20/167 (11%)

Query: 510 SFSQENL-----IGAGMLGSVYRAQLP------DGKLLAVKKLDKRASSQQKDDEFLELV 558
           +F + NL     +G G  G V+ A+           L+ VK L K    +    EF   +
Sbjct: 1   AFPRSNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKT-KDENLQSEFRREL 59

Query: 559 NNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDML----HSDDELK-NNLSWNTR 613
           +   ++ H N+V L G C E     +I EY   G L+  L      D++LK   LS   +
Sbjct: 60  DMFRKLSHKNVVRLLGLCREAEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQK 119

Query: 614 IRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGL 660
           + +    A  +++L        VHR+  + N L+     V VS   L
Sbjct: 120 VALCTQIALGMDHLS---NARFVHRDLAARNCLVSSQREVKVSLLSL 163

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275

>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

 Score = 54.5 bits (131), Expect = 5e-08
 Identities = 42/158 (26%), Positives = 80/158 (50%), Gaps = 20/158 (12%)

Query: 517 IGAGMLG-SVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           IG G  G ++      DGK   +K+++    S ++ +E  + V  +  ++H NIV+ +  
Sbjct: 8   IGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQES 67

Query: 576 CAEHGQRLLIYEYCSNGTL-------QDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
             E+G   ++ +YC  G L       + +L  +D++   L W  +I +      AL+++H
Sbjct: 68  FEENGNLYIVMDYCEGGDLYKKINAQRGVLFPEDQI---LDWFVQICL------ALKHVH 118

Query: 629 EICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS 666
           +     I+HR+ KS NI L  D  + + D G+A +++S
Sbjct: 119 D---RKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNS 153

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycystic kidney disease, which is characterized by benign polycystic tumors formed by abnormal overgrowth of renal epithelial cells. It appears also to be involved in DNA damage response, and may be important for both correct DNA damage checkpoint activation and DNA repair. Length = 256

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 49.1 bits (118), Expect = 7e-08
 Identities = 23/59 (38%), Positives = 30/59 (50%)

Query: 151 LTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQL 209
           L  + L+NN L+     AF+ L  L  LDLS NNL+   P +   L  L +L L  N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 54.2 bits (130), Expect = 8e-08
 Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 34/173 (19%)

Query: 517 IGAGMLGSVYRAQ------LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           +G G  G V +A             +AVK L + ASS +  D   E  N + ++ H +++
Sbjct: 8   LGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEF-NLLKQVNHPHVI 66

Query: 571 ELKGYCAEHGQRLLIYEYCSNGTLQDMLH----------------------SDDELKNNL 608
           +L G C++ G  LLI EY   G+L+  L                       + DE    L
Sbjct: 67  KLYGACSQDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDE--RAL 124

Query: 609 SWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           +    I  A   +R ++YL E+    +VHR+  + N+L+ +   + +SD GL+
Sbjct: 125 TMGDLISFAWQISRGMQYLAEM---KLVHRDLAARNVLVAEGRKMKISDFGLS 174

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 53.7 bits (129), Expect = 8e-08
 Identities = 40/156 (25%), Positives = 76/156 (48%), Gaps = 19/156 (12%)

Query: 510 SFSQENLIGAGMLGSV----YRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR 565
           +F +E  +G+G  G V    +RAQ+     +A+K +++ A S+   ++F+E    + ++ 
Sbjct: 7   TFMKE--LGSGQFGVVHLGKWRAQIK----VAIKAINEGAMSE---EDFIEEAKVMMKLS 57

Query: 566 HANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALE 625
           H  +V+L G C +     ++ E+  NG L + L    + +  LS +  + M       +E
Sbjct: 58  HPKLVQLYGVCTQQKPLYIVTEFMENGCLLNYLR---QRQGKLSKDMLLSMCQDVCEGME 114

Query: 626 YLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           YL    +   +HR+  + N L+     V VSD G+ 
Sbjct: 115 YLE---RNSFIHRDLAARNCLVSSTGVVKVSDFGMT 147

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 53.9 bits (129), Expect = 8e-08
 Identities = 49/163 (30%), Positives = 74/163 (45%), Gaps = 13/163 (7%)

Query: 510 SFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLEL---VNNIDRIR 565
           ++    L+G G  G VY     D G+ LAVK++     SQ+   E   L   +  +  +R
Sbjct: 3   NWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLR 62

Query: 566 HANIVELKGYCAEHGQRLL--IYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
           H  IV+  G   +  ++ L    EY   G+++D L +   L  N+   TR R      + 
Sbjct: 63  HDRIVQYYGCLRDPEEKKLSIFVEYMPGGSIKDQLKAYGALTENV---TR-RYTRQILQG 118

Query: 624 LEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS 666
           + YLH      IVHR+ K ANIL D    V + D G +  I +
Sbjct: 119 VSYLH---SNMIVHRDIKGANILRDSAGNVKLGDFGASKRIQT 158

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 54.1 bits (131), Expect = 9e-08
 Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 53/176 (30%)

Query: 511 FSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDR------ 563
           + +   +G G    VY+A     G+++A+KK+        K  E  E  + I+       
Sbjct: 2   YEKGKKLGEGTYAVVYKARDKETGRIVAIKKI--------KLGERKEAKDGINFTALREI 53

Query: 564 -----IRHANIVELKG-YCAEHGQRL-LIYEYCSNGTLQDMLHSDDE--LKNNL------ 608
                ++H NI+ L   +   H   + L++E+         + +D E  +K+        
Sbjct: 54  KLLQELKHPNIIGLLDVFG--HKSNINLVFEF---------METDLEKVIKDKSIVLTPA 102

Query: 609 ---SWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
              S+   + M L   R LEYLH      I+HR+ K  N+L+  D  + ++D GLA
Sbjct: 103 DIKSY---MLMTL---RGLEYLHSNW---ILHRDLKPNNLLIASDGVLKLADFGLA 149

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 53.7 bits (129), Expect = 9e-08
 Identities = 49/168 (29%), Positives = 72/168 (42%), Gaps = 35/168 (20%)

Query: 517 IGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQK-------DDEFLELVNNIDRIRHAN 568
           +G G  G V   Q+   GK+ A KKLDK+   ++K       + + LE V++        
Sbjct: 1   LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSS------RF 54

Query: 569 IVELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYL 627
           IV L  Y  E    L L+    + G L+  +++  E                 ARA+ Y 
Sbjct: 55  IVSL-AYAFETKDDLCLVMTLMNGGDLKYHIYNVGE------------PGFPEARAIFYA 101

Query: 628 HEIC-------QPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
            +I        Q  IV+R+ K  N+LLDD   V +SD GLA  +  G 
Sbjct: 102 AQIICGLEHLHQRRIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGK 149

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 54.2 bits (130), Expect = 1e-07
 Identities = 51/165 (30%), Positives = 74/165 (44%), Gaps = 29/165 (17%)

Query: 97  ENLGAFSSIRVIDLSNNHIGGSIPSILPVTM-------------------------QNFF 131
           ENL     +  +DL+ N +  +I  +L +T                          +   
Sbjct: 87  ENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELD 146

Query: 132 LSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPP 191
           LSDN+   S+PS L  L  L ++ L+ N LS ++P    +L+ L NLDLS N +S +LPP
Sbjct: 147 LSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPP 203

Query: 192 SLENLSQLTTLHLQNNQLSGTLDVLQDLP-LRDLNIENNLFSGPI 235
            +E LS L  L L NN +   L  L +L  L  L + NN      
Sbjct: 204 EIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLP 248

Length = 394

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 53.4 bits (128), Expect = 1e-07
 Identities = 44/154 (28%), Positives = 79/154 (51%), Gaps = 21/154 (13%)

Query: 517 IGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           IG G  G +Y A+   D +   +K++D      ++ +   + V  + +++H NIV     
Sbjct: 8   IGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFAS 67

Query: 576 CAEHGQRLLIYEYCSNGTL-------QDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
             E+G+  ++ EYC  G L       + +L S+D++   LSW  +I  +LG    L+++H
Sbjct: 68  FQENGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQI---LSWFVQI--SLG----LKHIH 118

Query: 629 EICQPPIVHRNFKSANILLDDDLAVS-VSDCGLA 661
           +     I+HR+ KS NI L  +  V+ + D G+A
Sbjct: 119 D---RKILHRDIKSQNIFLSKNGMVAKLGDFGIA 149

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 40/161 (24%), Positives = 66/161 (40%), Gaps = 18/161 (11%)

Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKG-Y 575
           +G G  GSV + +L +  ++   K      +     + L  +      +   IV+  G +
Sbjct: 9   LGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAF 68

Query: 576 CAEHGQRLLI-YEYCSNGTLQDMLHSDDELKNNLSWNTRI------RMALGAARALEYLH 628
             E    + I  EYC  G+L      D   K       RI      ++A    + L YLH
Sbjct: 69  LDESSSSIGIAMEYCEGGSL------DSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLH 122

Query: 629 EICQPPIVHRNFKSANILLDDDLAVSVSDCGLA-PLISSGS 668
                 I+HR+ K +NILL     V + D G++  L++S +
Sbjct: 123 S---RKIIHRDIKPSNILLTRKGQVKLCDFGVSGELVNSLA 160

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 49/160 (30%), Positives = 72/160 (45%), Gaps = 29/160 (18%)

Query: 517 IGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDR-IRHANIVELKG 574
           IG G  G V  A     G+ +AVKK+D R   Q+++  F E+V  I R  +H NIVE+  
Sbjct: 27  IGEGSTGIVCIATDKSTGRQVAVKKMDLR-KQQRRELLFNEVV--IMRDYQHPNIVEMYS 83

Query: 575 YCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRM--------ALGAARALEY 626
                 +  ++ E+   G L D++             T  RM         L   +AL +
Sbjct: 84  SYLVGDELWVVMEFLEGGALTDIV-------------THTRMNEEQIATVCLAVLKALSF 130

Query: 627 LHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS 666
           LH      ++HR+ KS +ILL  D  V +SD G    +S 
Sbjct: 131 LH---AQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSK 167

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 28/161 (17%)

Query: 516 LIGAGMLGSVYRA-QLPDGKLLAVKKLD-KRASSQQKDDEFLELVNNIDR-------IRH 566
           LIG G  G VY A  +  G+++AVK+++     + + D    ++V  +         + H
Sbjct: 8   LIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDH 67

Query: 567 ANIVELKGYCAEHGQRLL-IY-EYCSNGTLQDMLHS----DDELKNNLSWNTRIRMALGA 620
            NIV+  G+  E  +  L I+ EY   G++   L +    +++L    +           
Sbjct: 68  LNIVQYLGF--ETTEEYLSIFLEYVPGGSIGSCLRTYGRFEEQLVRFFTEQV-------- 117

Query: 621 ARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
              L YLH      I+HR+ K+ N+L+D D    +SD G++
Sbjct: 118 LEGLAYLH---SKGILHRDLKADNLLVDADGICKISDFGIS 155

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 52.5 bits (127), Expect = 2e-07
 Identities = 47/151 (31%), Positives = 63/151 (41%), Gaps = 17/151 (11%)

Query: 517 IGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNI-DRIRHANIVELKG 574
           +G G  G V   +    GK  A+K L K    + K  E +     I   IRH  +V L G
Sbjct: 9   LGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYG 68

Query: 575 YCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR---ALEYLHEI 630
              +    L L+ EY   G L   L         +    R      AA+   ALEYLH  
Sbjct: 69  -SFQDDSNLYLVMEYVPGGELFSHLRKSGRFPEPV---ARFY----AAQVVLALEYLHS- 119

Query: 631 CQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
               IV+R+ K  N+LLD D  + ++D G A
Sbjct: 120 LD--IVYRDLKPENLLLDSDGYIKITDFGFA 148

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 52.7 bits (126), Expect = 2e-07
 Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 19/140 (13%)

Query: 536 LAVKKLDKRASSQQKDDEF--LELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGT 593
           +AVK L   A+ +   D    +E++  I +  H NI+ L G C + G   +I EY S G 
Sbjct: 53  VAVKMLKSDATEKDLSDLISEMEMMKMIGK--HKNIINLLGACTQDGPLYVIVEYASKGN 110

Query: 594 LQDMLHS------------DDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFK 641
           L++ L +                +  LS+   +  A   AR +EYL        +HR+  
Sbjct: 111 LREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYL---ASKKCIHRDLA 167

Query: 642 SANILLDDDLAVSVSDCGLA 661
           + N+L+ +D  + ++D GLA
Sbjct: 168 ARNVLVTEDNVMKIADFGLA 187

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|165291 PHA02988, PHA02988, hypothetical protein; Provisional

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 12/154 (7%)

Query: 524 SVYRAQLPDGKLLAVKKLDK-RASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQR 582
           S+Y+    + K + ++   K     +   D     + N+ RI   NI+++ G+  +    
Sbjct: 35  SIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDD 93

Query: 583 L----LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHR 638
           L    LI EYC+ G L+++L  D E   +LS+ T++ MA+   + L  L++    P  ++
Sbjct: 94  LPRLSLILEYCTRGYLREVL--DKE--KDLSFKTKLDMAIDCCKGLYNLYKYTNKP--YK 147

Query: 639 NFKSANILLDDDLAVSVSDCGLAPLISSGSVSQV 672
           N  S + L+ ++  + +   GL  ++SS     V
Sbjct: 148 NLTSVSFLVTENYKLKIICHGLEKILSSPPFKNV 181

Length = 283

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 52.3 bits (125), Expect = 3e-07
 Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 23/168 (13%)

Query: 510 SFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEF-LELVNNIDRIRHA 567
           +F Q  ++G G  G V   Q+   GK+ A KKL+K+   ++K +   L     ++++   
Sbjct: 1   TFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSR 60

Query: 568 NIVELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEY 626
            +V L  Y  E    L L+    + G L+  ++   E                  RA+ Y
Sbjct: 61  FVVSL-AYAYETKDALCLVLTLMNGGDLKFHIYHMGE------------AGFEEGRAVFY 107

Query: 627 LHEIC-------QPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG 667
             EIC       Q  IV+R+ K  NILLDD   + +SD GLA  +  G
Sbjct: 108 AAEICCGLEDLHQERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEG 155

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 16/160 (10%)

Query: 517 IGAGMLGSVYR---AQLPDGKL---LAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           +G G  G VY      +  G+    +A+K +++ AS +++  EFL   + +      ++V
Sbjct: 14  LGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERI-EFLNEASVMKEFNCHHVV 72

Query: 571 ELKGYCAEHGQRLLIYEYCSNGTLQDMLHS---DDELKNNLSWNTR---IRMALGAARAL 624
            L G  +     L++ E  + G L+  L S   + E    L   T    I+MA   A  +
Sbjct: 73  RLLGVVSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGM 132

Query: 625 EYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI 664
            YL        VHR+  + N ++ +DL V + D G+   I
Sbjct: 133 AYLAAK---KFVHRDLAARNCMVAEDLTVKIGDFGMTRDI 169

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 41/142 (28%), Positives = 73/142 (51%), Gaps = 19/142 (13%)

Query: 535 LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTL 594
           L+AVK L   A+   ++D FL+ V  + R++  NI+ L G C +     +I EY  NG L
Sbjct: 48  LVAVKILRPDANKNARND-FLKEVKILSRLKDPNIIRLLGVCVDEDPLCMITEYMENGDL 106

Query: 595 QDML---HSDDELKNN------------LSWNTRIRMALGAARALEYLHEICQPPIVHRN 639
              L   H DD+ +N             +S+++ + +AL  A  ++YL  +     VHR+
Sbjct: 107 NQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSL---NFVHRD 163

Query: 640 FKSANILLDDDLAVSVSDCGLA 661
             + N L+ ++L + ++D G++
Sbjct: 164 LATRNCLVGENLTIKIADFGMS 185

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 51.6 bits (123), Expect = 4e-07
 Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 9/155 (5%)

Query: 510 SFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
           S   E  +GAG  G V+ A       +AVK +   + S +    FL   N +  ++H  +
Sbjct: 7   SLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEA---FLAEANVMKTLQHDKL 63

Query: 570 VELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
           V+L     +     +I E+ + G+L D L SD+  K  L      ++   +A+  E +  
Sbjct: 64  VKLHAVVTKE-PIYIITEFMAKGSLLDFLKSDEGSKQPLP-----KLIDFSAQIAEGMAF 117

Query: 630 ICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI 664
           I Q   +HR+ ++ANIL+   L   ++D GLA +I
Sbjct: 118 IEQRNYIHRDLRAANILVSASLVCKIADFGLARVI 152

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 51.9 bits (124), Expect = 4e-07
 Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 22/167 (13%)

Query: 517 IGAGMLGSVYRAQ----LPDGK--LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           +G G  G V+ A+    LP+    L+AVK L + + S ++D  F      +  ++H +IV
Sbjct: 13  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQD--FQREAELLTVLQHQHIV 70

Query: 571 ELKGYCAEHGQRLLIYEYCSNGTLQDMLHS-----------DDELKNNLSWNTRIRMALG 619
              G C E    L+++EY  +G L   L S           +D     L+    + +A  
Sbjct: 71  RFYGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQ 130

Query: 620 AARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS 666
            A  + YL  +     VHR+  + N L+   L V + D G++  I S
Sbjct: 131 IASGMVYLASL---HFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYS 174

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 52.3 bits (125), Expect = 4e-07
 Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 23/142 (16%)

Query: 536 LAVKKLDKRASSQQKDDEFLELVNNIDRIR----HANIVELKGYCAEHGQRLLIYEYCSN 591
           +AVK L   A+    D +  +LV+ ++ ++    H NI+ L G C + G   ++ EY S 
Sbjct: 47  VAVKMLKDDAT----DKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVLVEYASK 102

Query: 592 GTLQDML---------HSDDELK---NNLSWNTRIRMALGAARALEYLHEICQPPIVHRN 639
           G L++ L         +S D  K     L++   +  A   AR +EYL        +HR+
Sbjct: 103 GNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYL---ASQKCIHRD 159

Query: 640 FKSANILLDDDLAVSVSDCGLA 661
             + N+L+ +D  + ++D GLA
Sbjct: 160 LAARNVLVTEDNVMKIADFGLA 181

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 51.6 bits (123), Expect = 4e-07
 Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 22/161 (13%)

Query: 517 IGAGMLGSVYRAQL------PDGKLLAVKKLDKRASSQQKD-DEFLELVNNIDRIRHANI 569
           +G G  G V+ A+        D  L+AVK L   + + +KD     EL+ N+   +H +I
Sbjct: 13  LGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNL---QHEHI 69

Query: 570 VELKGYCAEHGQRLLIYEYCSNGTLQDML--HSDDEL-------KNNLSWNTRIRMALGA 620
           V+  G C E    ++++EY  +G L   L  H  D +          L+ +  + +A   
Sbjct: 70  VKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQI 129

Query: 621 ARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           A  + YL        VHR+  + N L+ ++L V + D G++
Sbjct: 130 AAGMVYL---ASQHFVHRDLATRNCLVGENLLVKIGDFGMS 167

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 51.4 bits (123), Expect = 5e-07
 Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 19/162 (11%)

Query: 515 NLIGAGMLGSVYRAQLPD------GKL-LAVKKLDKRASSQQKDDEFLELVNNIDRIRHA 567
           N +G+G  G VY     D      G + +AVK L K A+ Q+K  EFL+  + +    H 
Sbjct: 1   NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKK-EFLKEAHLMSNFNHP 59

Query: 568 NIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNN---LSWNTRIRMALGAARAL 624
           NIV+L G C  +  + +I E    G L   L      +     L+    + + L  A+  
Sbjct: 60  NIVKLLGVCLLNEPQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGC 119

Query: 625 EYLHEICQPPIVHRNFKSANILL-----DDDLAVSVSDCGLA 661
            YL ++     +HR+  + N L+     D D  V + D GLA
Sbjct: 120 VYLEQM---HFIHRDLAARNCLVSEKGYDADRVVKIGDFGLA 158

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 51.7 bits (124), Expect = 5e-07
 Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 17/152 (11%)

Query: 516 LIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNI-DRIRHANIVELK 573
            +G G  G V+  +        A+K +      + K ++ +     +   + H  I+ L 
Sbjct: 8   TVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRL- 66

Query: 574 GYCAEHGQRLL--IYEYCSNGTLQDMLHSDDELKNNLS--WNTRIRMALGAARALEYLHE 629
            +  EH QR L  + EY   G L   L +     N+    + + I        ALEYLH 
Sbjct: 67  -FWTEHDQRFLYMLMEYVPGGELFSYLRNSGRFSNSTGLFYASEI------VCALEYLHS 119

Query: 630 ICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
                IV+R+ K  NILLD +  + ++D G A
Sbjct: 120 K---EIVYRDLKPENILLDKEGHIKLTDFGFA 148

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 51.2 bits (122), Expect = 5e-07
 Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 9/148 (6%)

Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +G G  G V+         +A+K L       +    FL+    + ++RH  +V L    
Sbjct: 14  LGQGCFGEVWMGTWNGTTKVAIKTLKPGTMMPEA---FLQEAQIMKKLRHDKLVPLYAVV 70

Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
           +E     ++ E+   G+L D L   D     L     + MA   A  + Y+  +     +
Sbjct: 71  SEE-PIYIVTEFMGKGSLLDFLKEGD--GKYLKLPQLVDMAAQIADGMAYIERM---NYI 124

Query: 637 HRNFKSANILLDDDLAVSVSDCGLAPLI 664
           HR+ ++ANIL+ D+L   ++D GLA LI
Sbjct: 125 HRDLRAANILVGDNLVCKIADFGLARLI 152

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

 Score = 51.2 bits (122), Expect = 6e-07
 Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 28/173 (16%)

Query: 508 TNSFSQENLIGAGMLGSVYRAQL------PDGKLLAVKKLDKRASSQQKDDEFLELVNNI 561
           T  F +E  +G    G VY+  L         + +A+K L  +A    ++ EF       
Sbjct: 6   TVRFMEE--LGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLRE-EFKHEAMMR 62

Query: 562 DRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDML-----HS-------DDELKNNLS 609
            R++H NIV L G   +     +I+ YCS+  L + L     HS       D  +K+ L 
Sbjct: 63  SRLQHPNIVCLLGVVTKEQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLE 122

Query: 610 WNTRIRMALGAARALEYL--HEICQPPIVHRNFKSANILLDDDLAVSVSDCGL 660
               + +    A  +E+L  H +      H++  + N+L+ D L V +SD GL
Sbjct: 123 PADFVHIVTQIAAGMEFLSSHHVV-----HKDLATRNVLVFDKLNVKISDLGL 170

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror2 plays important roles in skeletal and heart formation. Ror2-deficient mice show widespread bone abnormalities, ventricular defects in the heart, and respiratory dysfunction. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Ror2 is also implicated in neural development. Length = 283

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score = 51.2 bits (122), Expect = 8e-07
 Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 9/146 (6%)

Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +G G  G VY+A+  +   LA  K+ +  S ++ +D  +E +  +    H  IV+L G  
Sbjct: 20  LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVE-IEILATCNHPYIVKLLGAF 78

Query: 577 AEHGQRLLIYEYCSNGTLQD-MLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
              G+  ++ E+C  G +   ML  D  L          R  L    AL+YLH +    I
Sbjct: 79  YWDGKLWIMIEFCPGGAVDAIMLELDRGLTEP-QIQVICRQML---EALQYLHSM---KI 131

Query: 636 VHRNFKSANILLDDDLAVSVSDCGLA 661
           +HR+ K+ N+LL  D  + ++D G++
Sbjct: 132 IHRDLKAGNVLLTLDGDIKLADFGVS 157

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

 Score = 50.8 bits (121), Expect = 8e-07
 Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 8/161 (4%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGK-LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHA 567
           N F    ++G G  G V + +  + K ++A+KK      +++  +  L  +  +  ++  
Sbjct: 1   NKFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQE 60

Query: 568 NIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYL 627
           NIVELK      G+  L++EY      ++ML   +E+ N +             +A+ + 
Sbjct: 61  NIVELKEAFRRRGKLYLVFEYVE----KNMLELLEEMPNGVPPEKVRSYIYQLIKAIHWC 116

Query: 628 HEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
           H   +  IVHR+ K  N+L+  +  + + D G A  +S GS
Sbjct: 117 H---KNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGS 154

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes cause a phenotype similar to Rett syndrome (RTT), a progressive neurodevelopmental disorder. These pathogenic mutations are located in the N-terminal portion of the protein within the kinase domain. Length = 287

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 51.9 bits (124), Expect = 1e-06
 Identities = 21/43 (48%), Positives = 23/43 (53%), Gaps = 5/43 (11%)

Query: 441 MMMMPP--PPPPPPPP---PPPPPPPPPPPVVEKVIVKPIVPA 478
           M  +PP  PPPPPPPP   PP  PPPPPPP V          +
Sbjct: 1   MASLPPGNPPPPPPPPGFEPPSQPPPPPPPGVNVKKRSRKQLS 43

Length = 2365

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 43/174 (24%), Positives = 80/174 (45%), Gaps = 17/174 (9%)

Query: 510 SFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKK------LDKRASSQQKDDEFLELVNNID 562
           +F  E  IG G    VYRA  L DG  +A+KK      +D +A +     + ++ ++ + 
Sbjct: 3   NFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARA-----DCIKEIDLLK 57

Query: 563 RIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR 622
           ++ H N+++      E  +  ++ E    G L  M+    + K  +   T  +  +    
Sbjct: 58  QLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCS 117

Query: 623 ALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSHNL 676
           ALE++H      ++HR+ K AN+ +     V + D GL    SS + +  +H+L
Sbjct: 118 ALEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTA--AHSL 166

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 50.4 bits (120), Expect = 1e-06
 Identities = 47/184 (25%), Positives = 80/184 (43%), Gaps = 26/184 (14%)

Query: 517 IGAGMLGSVYRAQ------LPDGKLLAVKKLDKRASSQQKD-DEFLELVNNIDRIRHANI 569
           +G G  G V+ A+        D  L+AVK L     + +KD     EL+ N+   +H +I
Sbjct: 13  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNL---QHEHI 69

Query: 570 VELKGYCAEHGQRLLIYEYCSNGTLQDML--HSDDEL----------KNNLSWNTRIRMA 617
           V+  G C +    ++++EY  +G L   L  H  D +          K  L  +  + +A
Sbjct: 70  VKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIA 129

Query: 618 LGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQV-SHNL 676
              A  + YL        VHR+  + N L+  +L V + D G++  + S    +V  H +
Sbjct: 130 SQIASGMVYL---ASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTM 186

Query: 677 TIMR 680
             +R
Sbjct: 187 LPIR 190

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score = 50.0 bits (119), Expect = 2e-06
 Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 9/161 (5%)

Query: 510 SFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEF-LELVNNIDRIRHA 567
           +F Q  ++G G  G V   Q+   GK+ A K+L+K+   ++K +   L     ++++   
Sbjct: 1   TFRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQ 60

Query: 568 NIVELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEY 626
            +V L  Y  E    L L+    + G L+  +++      N  +    R    AA  L  
Sbjct: 61  FVVNL-AYAYETKDALCLVLTIMNGGDLKFHIYN----MGNPGFEEE-RALFYAAEILCG 114

Query: 627 LHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG 667
           L ++ +   V+R+ K  NILLDD   + +SD GLA  I  G
Sbjct: 115 LEDLHRENTVYRDLKPENILLDDYGHIRISDLGLAVKIPEG 155

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 11/132 (8%)

Query: 535 LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTL 594
           L+AVK L   AS   ++D FL+ V  + R+   NI  L G C       +I EY  NG L
Sbjct: 48  LVAVKVLRPDASDNARED-FLKEVKILSRLSDPNIARLLGVCTVDPPLCMIMEYMENGDL 106

Query: 595 QDMLHS----DDELKNN---LSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILL 647
              L         L  N   LS++T + MA   A  + YL  +     VHR+  + N L+
Sbjct: 107 NQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESL---NFVHRDLATRNCLV 163

Query: 648 DDDLAVSVSDCG 659
             +  + ++D G
Sbjct: 164 GKNYTIKIADFG 175

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 17/160 (10%)

Query: 516 LIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKG 574
           ++G G  G V+   +  D KL+ +K++     ++ +          +  + H NI+E   
Sbjct: 7   VVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYE 66

Query: 575 YCAEHGQRLLIYEYCSNGTLQDMLHSD-----DELKNNLSWNTRIRMALGAARALEYLHE 629
              E    +++ EY   GTL + +        DE    L +  +I +AL         H 
Sbjct: 67  NFLEDKALMIVMEYAPGGTLAEYIQKRCNSLLDE-DTILHFFVQILLAL---------HH 116

Query: 630 ICQPPIVHRNFKSANILLDD-DLAVSVSDCGLAPLISSGS 668
           +    I+HR+ K+ NILLD   + V + D G++ ++SS S
Sbjct: 117 VHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKS 156

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 43/149 (28%), Positives = 64/149 (42%), Gaps = 32/149 (21%)

Query: 517 IGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR-------HAN 568
           IG G    V +AQ    GK  A+K + K   S       LE VNN+  I+       H N
Sbjct: 7   IGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKS-------LEQVNNLREIQALRRLSPHPN 59

Query: 569 IVELKG--YCAEHGQRLLIYEYCSNGTLQDMLHSDDEL----KNNLSWNTRIRMALGAAR 622
           I+ L    +  + G+  L++E      L DM  +  EL    K  L             +
Sbjct: 60  ILRLIEVLFDRKTGRLALVFE------LMDM--NLYELIKGRKRPLPEKRVKSYMYQLLK 111

Query: 623 ALEYLHEICQPPIVHRNFKSANILLDDDL 651
           +L+++H   +  I HR+ K  NIL+ DD+
Sbjct: 112 SLDHMH---RNGIFHRDIKPENILIKDDI 137

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 5/147 (3%)

Query: 517 IGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           +G G  G V   Q+   GKL A KKL+K+   ++K  E   +   I    H+  +    Y
Sbjct: 1   LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAY 60

Query: 576 CAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPP 634
             +    L L+    + G L+  +++ DE                    LE+LH   Q  
Sbjct: 61  AFQTKTDLCLVMTIMNGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLH---QRR 117

Query: 635 IVHRNFKSANILLDDDLAVSVSDCGLA 661
           I++R+ K  N+LLD+D  V +SD GLA
Sbjct: 118 IIYRDLKPENVLLDNDGNVRISDLGLA 144

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod cells, which leads to termination of the phototransduction cascade. Mutations in GRK1 are associated to a recessively inherited form of stationary nightblindness called Oguchi disease. Length = 280

>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

 Score = 49.3 bits (117), Expect = 3e-06
 Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 13/150 (8%)

Query: 516 LIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLEL---VNNIDRIRHANIVE 571
           L+G G  G VY     D G+ LA K++     S +   E   L   +  +  ++H  IV+
Sbjct: 9   LLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQ 68

Query: 572 LKGYCAEHGQRLL--IYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
             G   +  ++ L    EY   G+++D L +   L  +++     ++  G    + YLH 
Sbjct: 69  YYGCLRDRAEKTLTIFMEYMPGGSVKDQLKAYGALTESVTRKYTRQILEG----MSYLH- 123

Query: 630 ICQPPIVHRNFKSANILLDDDLAVSVSDCG 659
                IVHR+ K ANIL D    V + D G
Sbjct: 124 --SNMIVHRDIKGANILRDSAGNVKLGDFG 151

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. In addition, MEKK3 is involved in interleukin-1 receptor and Toll-like receptor 4 signaling. It is also a specific regulator of the proinflammatory cytokines IL-6 and GM-CSF in some immune cells. MEKK3 also regulates calcineurin, which plays a critical role in T cell activation, apoptosis, skeletal myocyte differentiation, and cardiac hypertrophy. Length = 266

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 49.3 bits (117), Expect = 3e-06
 Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 14/162 (8%)

Query: 505 QQYTNSFSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDR 563
           ++Y +SF +   IG G  G V  A +   GK +AVKK+D R   QQ+ +     V  +  
Sbjct: 21  REYLDSFIK---IGEGSTGIVCIATEKHTGKQVAVKKMDLR--KQQRRELLFNEVVIMRD 75

Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
             H N+V++        +  ++ E+   G L D++      +  ++      + L   RA
Sbjct: 76  YHHENVVDMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIA-----TVCLSVLRA 130

Query: 624 LEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS 665
           L YLH      ++HR+ KS +ILL  D  + +SD G    +S
Sbjct: 131 LSYLH---NQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVS 169

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|222828 PHA01732, PHA01732, proline-rich protein

 Score = 45.9 bits (108), Expect = 3e-06
 Identities = 21/41 (51%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 444 MPPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVK 484
            P PP P PP P PPPPP PP  V +  VKP V AE   ++
Sbjct: 9   PPEPPAPLPPAPVPPPPPAPPAPVPEPTVKP-VNAEAPKIR 48

Length = 94

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 41/151 (27%), Positives = 74/151 (49%), Gaps = 11/151 (7%)

Query: 515 NLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQ---QKDDEFL-ELVNNIDRIRHANIV 570
            ++G G  G+VY      G+L+AVK+++   S+    +K+ E L E V+ +  ++H NIV
Sbjct: 6   EVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIV 65

Query: 571 ELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           +  G C +     +  E+   G++  +L+    L   +      ++  G A    YLH  
Sbjct: 66  QYLGTCLDDNTISIFMEFVPGGSISSILNRFGPLPEPVFCKYTKQILDGVA----YLHNN 121

Query: 631 CQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           C   +VHR+ K  N++L  +  + + D G A
Sbjct: 122 C---VVHRDIKGNNVMLMPNGIIKLIDFGCA 149

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 55/180 (30%), Positives = 85/180 (47%), Gaps = 37/180 (20%)

Query: 500 TIASLQQYTNSFSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELV 558
           TI S+      +++   IG G  G+VY A  +  G+ +A+K+++     QQ   E +  +
Sbjct: 10  TIVSVGDPKKKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNL---QQQPKKELI--I 64

Query: 559 NNIDRIR---HANIVE-LKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTR 613
           N I  +R   H NIV  L  Y    G  L ++ EY + G+L D++             T 
Sbjct: 65  NEILVMRENKHPNIVNYLDSYLV--GDELWVVMEYLAGGSLTDVV-------------TE 109

Query: 614 IRMALG--AA------RALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS 665
             M  G  AA      +ALE+LH      ++HR+ KS NILL  D +V ++D G    I+
Sbjct: 110 TCMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQIT 166

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

 Score = 48.6 bits (115), Expect = 4e-06
 Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 16/159 (10%)

Query: 511 FSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHAN 568
           F    L+G G  G VY+ + +  G+L A+K +D    +  +++E  + +N + +   H N
Sbjct: 8   FELVELVGNGTYGQVYKGRHVKTGQLAAIKVMD---VTGDEEEEIKQEINMLKKYSHHRN 64

Query: 569 IVELKGYCAEHG------QRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR 622
           I    G   +        Q  L+ E+C  G++ D++ +         W   I   +   R
Sbjct: 65  IATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREI--LR 122

Query: 623 ALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
            L +LH   Q  ++HR+ K  N+LL ++  V + D G++
Sbjct: 123 GLSHLH---QHKVIHRDIKGQNVLLTENAEVKLVDFGVS 158

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 48.9 bits (116), Expect = 4e-06
 Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 11/150 (7%)

Query: 517 IGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           IG G  G V  A +   GKL+AVKK+D R   QQ+ +     V  +   +H N+VE+   
Sbjct: 28  IGEGSTGIVCIATVKSSGKLVAVKKMDLR--KQQRRELLFNEVVIMRDYQHENVVEMYNS 85

Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
                +  ++ E+   G L D++      +  ++      + L   +AL  LH      +
Sbjct: 86  YLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIA-----AVCLAVLKALSVLH---AQGV 137

Query: 636 VHRNFKSANILLDDDLAVSVSDCGLAPLIS 665
           +HR+ KS +ILL  D  V +SD G    +S
Sbjct: 138 IHRDIKSDSILLTHDGRVKLSDFGFCAQVS 167

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 48.9 bits (116), Expect = 5e-06
 Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 36/180 (20%)

Query: 511 FSQENL-----IGAGMLGSVYRAQL--------PDGKLLAVKKLDKRASSQQKDDEFLEL 557
           FS++ L     +G G  G V  A+          +   +AVK L   A+ +   D    L
Sbjct: 12  FSRDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSD----L 67

Query: 558 VNNIDRI----RHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTR 613
           V+ ++ +    +H NI+ L G C + G   +I EY S G L++ L +        S++  
Sbjct: 68  VSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIA 127

Query: 614 ------------IRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
                       +      AR +EYL        +HR+  + N+L+ ++  + ++D GLA
Sbjct: 128 RVPDEQMTFKDLVSCTYQVARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLA 184

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

 Score = 48.8 bits (117), Expect = 5e-06
 Identities = 49/190 (25%), Positives = 71/190 (37%), Gaps = 48/190 (25%)

Query: 516 LIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQK-------DDEFLELVNNIDRIRHA 567
           L+G G +G V+  +L   GKL A+K LDK+   ++        + E L  ++      H 
Sbjct: 8   LLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLD------HP 61

Query: 568 NIVELKGYCAEHGQRLLIY--EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR--- 622
            +  L  Y +   +  L    +YC  G L  +L         LS           AR   
Sbjct: 62  FLPTL--YASFQTETYLCLVMDYCPGGELFRLLQRQPG--KCLSEE--------VARFYA 109

Query: 623 -----ALEYLHEICQPPIVHRNFKSANILL---------DDDLAVSVSDCGLAPLISSGS 668
                ALEYLH      IV+R+ K  NILL         D DL+            +   
Sbjct: 110 AEVLLALEYLH--LL-GIVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPPVSKALRK 166

Query: 669 VSQVSHNLTI 678
            S+ S   +I
Sbjct: 167 GSRRSSVNSI 176

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-terminal photosensory domain and a C-terminal catalytic domain. The N-terminal domain contains two LOV (Light, Oxygen or Voltage) domains that binds FMN. Photoexcitation of the LOV domains results in autophosphorylation at multiple sites and activation of the catalytic domain. Neurospora crassa nrc-2 plays a role in growth and development by controlling entry into the conidiation program. Length = 316

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 48.3 bits (115), Expect = 6e-06
 Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 10/147 (6%)

Query: 516 LIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKG 574
           ++G G  G VY A+ L     +A+K++ +R S  +      E +     ++H NIV+  G
Sbjct: 15  VLGKGTYGIVYAARDLSTQVRIAIKEIPERDS--RYVQPLHEEIALHSYLKHRNIVQYLG 72

Query: 575 YCAEHGQRLLIYEYCSNGTLQDMLHSD-DELKNNLSWNTRIRMALGAARALEYLHEICQP 633
             +E+G   +  E    G+L  +L S    LK+N    T I         L+YLH+    
Sbjct: 73  SDSENGFFKIFMEQVPGGSLSALLRSKWGPLKDN--EQTIIFYTKQILEGLKYLHDN--- 127

Query: 634 PIVHRNFKSANILLDDDLAV-SVSDCG 659
            IVHR+ K  N+L++    V  +SD G
Sbjct: 128 QIVHRDIKGDNVLVNTYSGVVKISDFG 154

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 48.1 bits (114), Expect = 6e-06
 Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 14/162 (8%)

Query: 517 IGAGMLGSVYRAQL-PDGKLL--AVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELK 573
           +G G  GSV   QL  D  +L  AVK +     ++ + ++FL     +    H N++ L 
Sbjct: 7   LGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLI 66

Query: 574 GYCAEHGQR------LLIYEYCSNGTLQD-MLHSD-DELKNNLSWNTRIRMALGAARALE 625
           G C +  +       ++I  +  +G L   +L+S   +    L     ++     A  +E
Sbjct: 67  GVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGME 126

Query: 626 YLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG 667
           YL        +HR+  + N +L++++ V V+D GL+  I +G
Sbjct: 127 YL---SSKSFIHRDLAARNCMLNENMNVCVADFGLSKKIYNG 165

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 48.1 bits (115), Expect = 7e-06
 Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 28/164 (17%)

Query: 95  LGENLGAFSSIRVIDLSNNHIG----GSIPSIL-PVTMQNFFLSDNQFSGSIPSSLATLT 149
           L + L     ++ +DLS+N +G    G + S+L   ++Q   L++N         LA   
Sbjct: 73  LLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGL 132

Query: 150 L-----LTDMSLNNNLLSGE----IPDAFQSLTGLINLDLSSNNLSGE----LPPSLENL 196
                 L  + L  N L G     +  A ++   L  L+L++N +       L   L+  
Sbjct: 133 KDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKAN 192

Query: 197 SQLTTLHLQNN--------QLSGTLDVLQDLPLRDLNIENNLFS 232
             L  L L NN         L+ TL  L+   L  LN+ +N  +
Sbjct: 193 CNLEVLDLNNNGLTDEGASALAETLASLKS--LEVLNLGDNNLT 234

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 47.2 bits (113), Expect = 9e-06
 Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 13/156 (8%)

Query: 517 IGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNI-DRIRHANIVELKG 574
           +G G  G V   ++    +  A+K + KR   +    E +     I +   H  IV+L  
Sbjct: 1   LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKL-- 58

Query: 575 YCAEHGQRLL--IYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQ 632
           Y     ++ +  + EYC  G L  +L           +  R  +A     A EYLH    
Sbjct: 59  YRTFKDKKYIYMLMEYCLGGELWTILRDRGLFDE---YTARFYIA-CVVLAFEYLHNR-- 112

Query: 633 PPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
             I++R+ K  N+LLD +  V + D G A  + SG 
Sbjct: 113 -GIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQ 147

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 437 SSLDMMMMPPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKP 492
            SLD   + PP  P  P P P  PP P P VEK   KP    +  A        KP
Sbjct: 83  PSLDPATVAPPNTPVEPEPAPVEPPKPKP-VEKPKPKPKPQQKVEAPPAPKPEPKP 137

Length = 226

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 41/161 (25%), Positives = 81/161 (50%), Gaps = 13/161 (8%)

Query: 511 FSQENLIGAGMLGSVYRA-QLPDGKLL----AVKKLDKRASSQQKDDEFLELVNNIDRIR 565
           F +  ++G+G  G+VY+   +P+G+ +    A+K+L + A+S + + E L+    +  + 
Sbjct: 9   FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKEL-REATSPKANKEILDEAYVMASVD 67

Query: 566 HANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALE 625
           + ++  L G C     +L I +    G L D +    E K+N+     +   +  A+ + 
Sbjct: 68  NPHVCRLLGICLTSTVQL-ITQLMPFGCLLDYVR---EHKDNIGSQYLLNWCVQIAKGMN 123

Query: 626 YLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS 666
           YL E     +VHR+  + N+L+     V ++D GLA L+ +
Sbjct: 124 YLEE---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 161

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

 Score = 47.3 bits (112), Expect = 1e-05
 Identities = 47/150 (31%), Positives = 66/150 (44%), Gaps = 13/150 (8%)

Query: 516 LIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR---HANIVE 571
           L+G G  G VY     D G+ LAVK++     S +   E   L   I  ++   H  IV+
Sbjct: 9   LLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQ 68

Query: 572 LKGYCAEHGQRLL--IYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
             G   +  +R L    E+   G+++D L S   L  N+   TR +        + YLH 
Sbjct: 69  YYGCLRDPMERTLSIFMEHMPGGSIKDQLKSYGALTENV---TR-KYTRQILEGVSYLH- 123

Query: 630 ICQPPIVHRNFKSANILLDDDLAVSVSDCG 659
                IVHR+ K ANIL D    V + D G
Sbjct: 124 --SNMIVHRDIKGANILRDSVGNVKLGDFG 151

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays roles in T cell receptor signaling, immune synapse formation, cytokine gene expression, as well as in EGF and FGF receptor signaling. Length = 265

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 48/152 (31%), Positives = 71/152 (46%), Gaps = 20/152 (13%)

Query: 517 IGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLE-----LVNNIDRIRHANIV 570
           IG G  G V  A+   DGK  AVK L K+A  ++K+ + +      L+ N+   +H  +V
Sbjct: 3   IGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNV---KHPFLV 59

Query: 571 ELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRM-ALGAARALEYLH 628
            L  Y  +   +L  + +Y + G L   L  +           R R  A   A AL YLH
Sbjct: 60  GLH-YSFQTADKLYFVLDYVNGGELFFHLQRERSFPE-----PRARFYAAEIASALGYLH 113

Query: 629 EICQPPIVHRNFKSANILLDDDLAVSVSDCGL 660
            +    I++R+ K  NILLD    V ++D GL
Sbjct: 114 SL---NIIYRDLKPENILLDSQGHVVLTDFGL 142

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 5/44 (11%)

Query: 37 NPNDVAAINSLYAALGSP---VLPGWVASAGDPCGESWQGVQCN 77
            +D  A+ +  ++L       L  W  S+ DPC  SW GV C+
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPSSSDPC--SWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 112 NNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQS 171
            + + GS   +  + + +  L+ N+   +I S L  LT LT + L+NN ++   P     
Sbjct: 80  ISSLDGSENLLNLLPLPSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPPLIGLL 138

Query: 172 LTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP-LRDLNIENNL 230
            + L  LDLS N +   LP  L NL  L  L L  N LS    +L +L  L +L++  N 
Sbjct: 139 KSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK 197

Query: 231 FS 232
            S
Sbjct: 198 IS 199

Length = 394

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 47.0 bits (111), Expect = 2e-05
 Identities = 38/153 (24%), Positives = 77/153 (50%), Gaps = 11/153 (7%)

Query: 516 LIGAGMLGSVYRA-QLPDGKLLAVK---KLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           ++G+G  G+VY+   +P+G+ + +    K+    +  + + EF++    +  + H ++V 
Sbjct: 14  VLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVR 73

Query: 572 LKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEIC 631
           L G C     +L + +   +G L D +H   E K+N+     +   +  A+ + YL E  
Sbjct: 74  LLGVCLSPTIQL-VTQLMPHGCLLDYVH---EHKDNIGSQLLLNWCVQIAKGMMYLEE-- 127

Query: 632 QPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI 664
              +VHR+  + N+L+     V ++D GLA L+
Sbjct: 128 -RRLVHRDLAARNVLVKSPNHVKITDFGLARLL 159

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 24/167 (14%)

Query: 516 LIGAGMLGSVYRAQLPDG----KLLAVKKLDKRA-SSQQKDDEFLELVNNI-DRIRHANI 569
           ++G G  G V++ +   G    K+ A+K L K      QKD    +   NI + ++H  I
Sbjct: 3   VLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFI 62

Query: 570 VELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDE---LKNNLSWN-TRIRMALGAARAL 624
           V+L  Y  + G +L LI EY S G L   +H + E   +++   +  + I +AL      
Sbjct: 63  VDLI-YAFQTGGKLYLILEYLSGGEL--FMHLEREGIFMEDTACFYLSEISLAL------ 113

Query: 625 EYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAP-LISSGSVS 670
           E+LH   Q  I++R+ K  NILLD    V ++D GL    I  G+V+
Sbjct: 114 EHLH---QQGIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGTVT 157

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 42/170 (24%), Positives = 79/170 (46%), Gaps = 9/170 (5%)

Query: 510 SFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLD--KRASSQQKDDEFLELVNNIDRIRH 566
           +F  E  IG G    VYRA  L D K +A+KK+   +   ++ + D   E ++ + ++ H
Sbjct: 3   NFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKE-IDLLKQLNH 61

Query: 567 ANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEY 626
            N+++      E  +  ++ E    G L  M+    + K  +   T  +  +    A+E+
Sbjct: 62  PNVIKYLDSFIEDNELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEH 121

Query: 627 LHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSHNL 676
           +H      ++HR+ K AN+ +     V + D GL    SS + +  +H+L
Sbjct: 122 MH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTA--AHSL 166

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|173756 cd08216, PK_STRAD, Pseudokinase domain of STE20-related kinase adapter protein

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 37/166 (22%), Positives = 70/166 (42%), Gaps = 19/166 (11%)

Query: 520 GMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLEL---VNNIDRIRHANIVELKGYC 576
            M+  + + + P   L+AVKK++  + S    ++   L   +    +++H NI+      
Sbjct: 13  LMIVHLAKHK-PTNTLVAVKKINLDSCS---KEDLKLLQQEIITSRQLQHPNILPYVTSF 68

Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMAL-GAARALEYLHEICQPPI 635
               +  ++    + G+ +D+L         L     I   L     AL+Y+H       
Sbjct: 69  IVDSELYVVSPLMAYGSCEDLL--KTHFPEGLP-ELAIAFILKDVLNALDYIH---SKGF 122

Query: 636 VHRNFKSANILLDDDLAVSVSDCGLA---PLISSGSVSQVSHNLTI 678
           +HR+ K+++ILL  D  V +S  GL     +I  G   +V H+   
Sbjct: 123 IHRSVKASHILLSGDGKVVLS--GLRYSVSMIKHGKRQRVVHDFPK 166

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buccal mucosa. There are two forms of STRAD, alpha and beta, that complex with LKB1 and MO25. The structure of STRAD-alpha is available and shows that this protein binds ATP, has an ordered activation loop, and adopts a closed conformation typical of fully active protein kinases. It does not possess activity due to nonconservative substitutions of essential catalytic residues. ATP binding enhances the affinity of STRAD for MO25. The conformation of STRAD-alpha stabilized through ATP and MO25 may be needed to activate LKB1. Length = 314

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 10/154 (6%)

Query: 516 LIGAGMLGSVYRAQLPD-GKLLAVKK-LDKRASSQQKDDEFLELVNNIDRIRHANIVELK 573
           L+G G  G V + +  + G+++A+KK L+       K     E +  + ++RH N+V L 
Sbjct: 8   LVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMRE-IRMLKQLRHENLVNLI 66

Query: 574 GYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQP 633
                  +  L++E+  +  L D+        N L  +   +      R +E+ H     
Sbjct: 67  EVFRRKKRLYLVFEFVDHTVLDDLEK----YPNGLDESRVRKYLFQILRGIEFCH---SH 119

Query: 634 PIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG 667
            I+HR+ K  NIL+     V + D G A  +++ 
Sbjct: 120 NIIHRDIKPENILVSQSGVVKLCDFGFARTLAAP 153

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 15/150 (10%)

Query: 517 IGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLEL--VNNIDRI-RHANIVEL 572
           +G G  GSVY A+    G+L+A+KK+ K+  S    +E + L  V ++ ++  H NIV+L
Sbjct: 7   LGDGTFGSVYLARNKETGELVAIKKMKKKFYSW---EECMNLREVKSLRKLNEHPNIVKL 63

Query: 573 KGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIR-MALGAARALEYLHEIC 631
           K    E+ +   ++EY      Q M     +     S  + IR +     + L ++H+  
Sbjct: 64  KEVFRENDELYFVFEYMEGNLYQLMKDRKGKP---FS-ESVIRSIIYQILQGLAHIHKH- 118

Query: 632 QPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
                HR+ K  N+L+     V ++D GLA
Sbjct: 119 --GFFHRDLKPENLLVSGPEVVKIADFGLA 146

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 174 GLINLDLSSNNLSGELPP-SLENLSQLTTLHLQNNQLSG-TLDVLQDLP-LRDLNIENNL 230
            L +LDLS+N L+  +P  + + L  L  L L  N L+  + +    LP LR L++  N 
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 231 F 231
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|133237 cd05106, PTKc_CSF-1R, Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

 Score = 46.8 bits (111), Expect = 3e-05
 Identities = 36/112 (32%), Positives = 47/112 (41%), Gaps = 11/112 (9%)

Query: 511 FSQENL-----IGAGMLGSVYRAQL-----PDGKL-LAVKKLDKRASSQQKDDEFLELVN 559
           F ++NL     +GAG  G V  A        D  L +AVK L   A + +++    EL  
Sbjct: 35  FPRDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKI 94

Query: 560 NIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWN 611
                +H NIV L G C   G  L+I EYC  G L + L    E   N    
Sbjct: 95  LSHLGQHKNIVNLLGACTHGGPVLVITEYCCYGDLLNFLRKKAETFLNFVMA 146

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. It leads to increases in gene transcription and protein translation, and induces cytoskeletal remodeling. CSF-1R signaling leads to a variety of cellular responses including survival, proliferation, and differentiation of target cells. It plays an important role in innate immunity, tissue development and function, and the pathogenesis of some diseases including atherosclerosis and cancer. CSF-1R signaling is also implicated in mammary gland development during pregnancy and lactation. Aberrant CSF-1/CSF-1R expression correlates with tumor cell invasiveness, poor clinical prognosis, and bone metastasis in breast cancer. Although the structure of the human CSF-1R catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 374

>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

 Score = 46.5 bits (110), Expect = 3e-05
 Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 16/160 (10%)

Query: 510 SFSQENLIGAGMLGSVY---RAQLPD-GKLLAVKKLDKRASSQQ-KDDEFLELVNNI-DR 563
           +F    ++G G  G V+   +    D GKL A+K L K A  Q+ K  E      N+ + 
Sbjct: 1   NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEH 60

Query: 564 IRHANIVELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAA- 621
           +R +  +    Y  +   +L LI +Y S G +   L+  D    +      +R   G   
Sbjct: 61  VRQSPFLVTLHYAFQTEAKLHLILDYVSGGEMFTHLYQRDNFSED-----EVRFYSGEII 115

Query: 622 RALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
            ALE+LH++    IV+R+ K  NILLD +  V ++D GL+
Sbjct: 116 LALEHLHKL---GIVYRDIKLENILLDSEGHVVLTDFGLS 152

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK2 and MSK1 play nonredundant roles in activating histone H3 kinases, which play pivotal roles in compaction of the chromatin fiber. MSK2 is the required H3 kinase in response to stress stimuli and activation of the p38 MAPK pathway. MSK2 also plays a role in the pathogenesis of psoriasis. Length = 332

>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

 Score = 46.1 bits (109), Expect = 3e-05
 Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 23/168 (13%)

Query: 510 SFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEF-LELVNNIDRIRHA 567
           +F    ++G G  G V   Q+   GK+ A KKL+K+   ++K +   L     ++++   
Sbjct: 1   TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSR 60

Query: 568 NIVELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEY 626
            +V L  Y  E    L L+    + G L+  +++   + N               RA+ Y
Sbjct: 61  FVVSL-AYAYETKDALCLVLTIMNGGDLKFHIYN---MGNP---------GFDEQRAIFY 107

Query: 627 LHEIC-------QPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG 667
             E+C       +  IV+R+ K  NILLDD   + +SD GLA  I  G
Sbjct: 108 AAELCCGLEDLQRERIVYRDLKPENILLDDRGHIRISDLGLAVQIPEG 155

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK4 polymorphisms are associated with hypertension and salt sensitivity, as they cause hyperphosphorylation, desensitization, and internalization of the dopamine 1 (D1) receptor while increasing the expression of the angiotensin II type 1 receptor. GRK4 plays a crucial role in the D1 receptor regulation of sodium excretion and blood pressure. Length = 285

>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 39/169 (23%), Positives = 79/169 (46%), Gaps = 16/169 (9%)

Query: 501 IASLQQYTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVN 559
           +++L+     F    ++G G  G VY+ + +  G+L A+K +D    ++ +++E    +N
Sbjct: 8   LSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMD---VTEDEEEEIKLEIN 64

Query: 560 NIDRI-RHANIVELKGYCAEHG------QRLLIYEYCSNGTLQDMLHSDDELKNNLSWNT 612
            + +   H NI    G   +        Q  L+ E+C  G++ D++ +     N L  + 
Sbjct: 65  MLKKYSHHRNIATYYGAFIKKSPPGHDDQLWLVMEFCGAGSVTDLVKNTK--GNALKEDW 122

Query: 613 RIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
              +     R L +LH      ++HR+ K  N+LL ++  V + D G++
Sbjct: 123 IAYICREILRGLAHLH---AHKVIHRDIKGQNVLLTENAEVKLVDFGVS 168

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K4 is also called Nck Interacting kinase (NIK). It facilitates the activation of the MAPKs, extracellular signal-regulated kinase (ERK) 1, ERK2, and c-Jun N-terminal kinase (JNK), by phosphorylating and activating MEKK1. MAP4K4 plays a role in tumor necrosis factor (TNF) alpha-induced insulin resistance. MAP4K4 silencing in skeletal muscle cells from type II diabetic patients restores insulin-mediated glucose uptake. MAP4K4, through JNK, also plays a broad role in cell motility, which impacts inflammation, homeostasis, as well as the invasion and spread of cancer. MAP4K4 is found to be highly expressed in most tumor cell lines relative to normal tissue. MAP4K6 (also called MINK for Misshapen/NIKs-related kinase) is activated after Ras induction and mediates activation of p38 MAPK. MAP4K6 plays a role in cell cycle arrest, cytoskeleton organization, cell adhesion, and cell motility. Length = 282

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 48/174 (27%), Positives = 73/174 (41%), Gaps = 35/174 (20%)

Query: 510 SFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQK-------DDEFLELVNNI 561
           +F    ++G G  G V   Q+   GK+ A KKL+K+   ++K       + + LE VN+ 
Sbjct: 1   TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSR 60

Query: 562 DRIRHANIVELK-GYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGA 620
             +  A   E K   C       L+    + G L+  ++       N+            
Sbjct: 61  FVVSLAYAYETKDALC-------LVLTLMNGGDLKFHIY-------NMG-----NPGFDE 101

Query: 621 ARALEYLHEIC-------QPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG 667
            RA+ Y  EI        +  IV+R+ K  NILLDD   + +SD GLA  I  G
Sbjct: 102 ERAVFYAAEITCGLEDLHRERIVYRDLKPENILLDDYGHIRISDLGLAVEIPEG 155

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 49/152 (32%), Positives = 75/152 (49%), Gaps = 15/152 (9%)

Query: 517 IGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVEL-KG 574
           IG G  G V  A +   G+ +AVK +D R   Q+++  F E+V   D  +H N+VE+ K 
Sbjct: 29  IGEGSTGIVCIAREKHSGRQVAVKMMDLR-KQQRRELLFNEVVIMRD-YQHQNVVEMYKS 86

Query: 575 YCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQP 633
           Y    G+ L ++ E+   G L D++      +  L+      +     +AL YLH     
Sbjct: 87  YLV--GEELWVLMEFLQGGALTDIVS-----QTRLNEEQIATVCESVLQALCYLH---SQ 136

Query: 634 PIVHRNFKSANILLDDDLAVSVSDCGLAPLIS 665
            ++HR+ KS +ILL  D  V +SD G    IS
Sbjct: 137 GVIHRDIKSDSILLTLDGRVKLSDFGFCAQIS 168

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is highly expressed in the brain. It is not required for viability, but together with PAK5, it is required for normal levels of locomotion and activity, and for learning and memory. Increased expression of PAK6 is found in primary and metastatic prostate cancer. PAK6 may play a role in the regulation of motility. Length = 297

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 21/152 (13%)

Query: 517 IGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKD--DEFLELVNNIDRIRHANIVELK 573
           I  G  G V+ A+    G + A+K + K+A   +K+  D+ L   + + + +   +V+L 
Sbjct: 1   ISKGAYGRVFLAKKKSTGDIYAIKVI-KKADMIRKNQVDQVLTERDILSQAQSPYVVKLY 59

Query: 574 GYCAEHGQRL-LIYEYCSNGTLQDMLHS----DDELKNNLSWNTRIRMALGAARALEYLH 628
            Y  +  + L L+ EY   G L  +L +    D+++         I +AL      EYLH
Sbjct: 60  -YSFQGKKNLYLVMEYLPGGDLASLLENVGSLDEDVARIYI--AEIVLAL------EYLH 110

Query: 629 EICQPPIVHRNFKSANILLDDDLAVSVSDCGL 660
                 I+HR+ K  NIL+D +  + ++D GL
Sbjct: 111 SN---GIIHRDLKPDNILIDSNGHLKLTDFGL 139

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 20/160 (12%)

Query: 515 NLIGAGMLGSVYRAQLPDGKLLA-----VKKLDKRASSQQKD---DEFLELVNNIDRIRH 566
           +L+  G  G ++   L D K        VK +   AS  Q      E   L      + H
Sbjct: 12  DLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYG----LSH 67

Query: 567 ANIVELKGYCAE-HGQRLLIYEYCSNGTLQDML----HSDDELKNNLSWNTRIRMALGAA 621
            NI+ +   C E      ++Y Y + G L+  L      +      LS    + MA+  A
Sbjct: 68  QNILPILHVCIEDGEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIA 127

Query: 622 RALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
             + YLH+     ++H++  + N ++D++L V ++D  L+
Sbjct: 128 CGMSYLHKR---GVIHKDIAARNCVIDEELQVKITDNALS 164

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. Length = 280

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 27/156 (17%)

Query: 517 IGAGMLGSVYRAQL-PDGKLLAVKKLDK-------RASSQQKDDEFLELVNNIDRIRHAN 568
           +G G  G V  A+    G+L A+K L K          S   +    E  N     RH  
Sbjct: 7   LGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETAN---SERHPF 63

Query: 569 IVELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR---AL 624
           +V L   C +    +  + EY + G L  M+H   ++       +  R    AA     L
Sbjct: 64  LVNLFA-CFQTEDHVCFVMEYAAGGDL--MMHIHTDV------FSEPRAVFYAACVVLGL 114

Query: 625 EYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGL 660
           +YLHE     IV+R+ K  N+LLD +  V ++D GL
Sbjct: 115 QYLHE---NKIVYRDLKLDNLLLDTEGFVKIADFGL 147

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 13/156 (8%)

Query: 510 SFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
           +F +   IG G  G VY+A+    G+++A+KK+     ++      +  ++ +  + H N
Sbjct: 1   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 60

Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           IV+L        +  L++E+         LH D +   + S  + I + L  +   + L 
Sbjct: 61  IVKLLDVIHTENKLYLVFEF---------LHQDLKKFMDASPLSGIPLPLIKSYLFQLLQ 111

Query: 629 EI--CQP-PIVHRNFKSANILLDDDLAVSVSDCGLA 661
            +  C    ++HR+ K  N+L++ + A+ ++D GLA
Sbjct: 112 GLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 147

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|222828 PHA01732, PHA01732, proline-rich protein

 Score = 42.0 bits (98), Expect = 6e-05
 Identities = 15/47 (31%), Positives = 19/47 (40%)

Query: 445 PPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAK 491
           PP P PP P PPPPP PP P     V        +    ++     +
Sbjct: 12  PPAPLPPAPVPPPPPAPPAPVPEPTVKPVNAEAPKIREAQSKRGQKQ 58

Length = 94

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 45.3 bits (107), Expect = 6e-05
 Identities = 46/168 (27%), Positives = 71/168 (42%), Gaps = 35/168 (20%)

Query: 517 IGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEF-----LELVNNIDRIRHANIV 570
           IG G  G+VY+A+ P  G  +A+K +  R  + +          + L+  ++   H NIV
Sbjct: 8   IGVGAYGTVYKARDPHSGHFVALKSV--RVQTNEDGLPLSTVREVALLKRLEAFDHPNIV 65

Query: 571 ELKGYCA-----EHGQRLLIYEYCSNGTLQDMLHSDDELKNNLS--------WNTRIRMA 617
            L   CA        +  L++E           H D +L+  L           T   + 
Sbjct: 66  RLMDVCATSRTDRETKVTLVFE-----------HVDQDLRTYLDKVPPPGLPAETIKDLM 114

Query: 618 LGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS 665
               R L++LH  C   IVHR+ K  NIL+     V ++D GLA + S
Sbjct: 115 RQFLRGLDFLHANC---IVHRDLKPENILVTSGGQVKLADFGLARIYS 159

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|173718 cd05629, STKc_NDR_like_fungal, Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 45.2 bits (107), Expect = 7e-05
 Identities = 48/158 (30%), Positives = 71/158 (44%), Gaps = 15/158 (9%)

Query: 509 NSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHA 567
             F    +IG G  G V   Q    GK+ A+K L K  S   K D+   +    D +  +
Sbjct: 1   EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLK--SEMFKKDQLAHVKAERDVLAES 58

Query: 568 N---IVELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
           +   +V L  Y  +  Q L LI E+   G L  ML   D    ++   TR  MA     A
Sbjct: 59  DSPWVVSLY-YSFQDAQYLYLIMEFLPGGDLMTMLIKYDTFSEDV---TRFYMA-ECVLA 113

Query: 624 LEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           +E +H++     +HR+ K  NIL+D    + +SD GL+
Sbjct: 114 IEAVHKL---GFIHRDIKPDNILIDRGGHIKLSDFGLS 148

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of Ace2p activity and cellular morphogenesis) network. CBK1 and Orb6 play similar roles in coordinating cell morphology with cell cycle progression. Ukc1 is involved in morphogenesis, pathogenicity, and pigment formation. Cot1 plays a role in polar tip extension. Length = 377

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 40.2 bits (95), Expect = 8e-05
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 173 TGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQ 217
           T L  LDLS+N ++ +LPP L NL  L TL L  N+++  L  L 
Sbjct: 1   TNLETLDLSNNQIT-DLPP-LSNLPNLETLDLSGNKIT-DLSPLS 42

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 44.7 bits (106), Expect = 8e-05
 Identities = 36/141 (25%), Positives = 55/141 (39%), Gaps = 11/141 (7%)

Query: 515 NLIGAGMLGSVYRAQL----PDGKLLAVK-KLDKRASSQQKDDEFLELVNNIDRIRHANI 569
             +G G  G VY         D   L V  K    + S+Q + +FL     + +  H NI
Sbjct: 12  RALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNI 71

Query: 570 VELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNN---LSWNTRIRMALGAARALEY 626
           V L G   E   R ++ E  + G L+  L  +         L+    +  A   A+  +Y
Sbjct: 72  VRLIGVSFERLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKY 131

Query: 627 LHEICQPPIVHRNFKSANILL 647
           L E      +HR+  + N LL
Sbjct: 132 LEE---NHFIHRDIAARNCLL 149

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 33/159 (20%)

Query: 517 IGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDE-----FLELVNNIDRIRHANIV 570
           IG G  G VY+A+    G+++A+KK+  R  +   +DE      +  ++ +  + H NIV
Sbjct: 7   IGEGTYGVVYKARDKLTGEIVALKKI--RLET---EDEGVPSTAIREISLLKELNHPNIV 61

Query: 571 ELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
            L         +L L++E+         L  D  LK  +  ++     L       YL++
Sbjct: 62  RLLDVVHS-ENKLYLVFEF---------LDLD--LKKYM--DSSPLTGLDPPLIKSYLYQ 107

Query: 630 ICQP-------PIVHRNFKSANILLDDDLAVSVSDCGLA 661
           + Q         ++HR+ K  N+L+D + A+ ++D GLA
Sbjct: 108 LLQGIAYCHSHRVLHRDLKPQNLLIDREGALKLADFGLA 146

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 44.4 bits (105), Expect = 9e-05
 Identities = 18/50 (36%), Positives = 19/50 (38%)

Query: 442 MMMPPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAK 491
           MM PPPP   PP  PP   P P          P  P    A K+S    K
Sbjct: 152 MMQPPPPHAMPPASPPAAQPAPSAPASSPPPTPASPPPAKAPKSSHPPLK 201

Length = 274

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 22/153 (14%)

Query: 517 IGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDE-----FLELVNNIDRIRHANIV 570
           IG G  G+V++A+     +++A+K++         DDE      L  +  +  ++H NIV
Sbjct: 8   IGEGTYGTVFKAKNRETHEIVALKRV-----RLDDDDEGVPSSALREICLLKELKHKNIV 62

Query: 571 ELKGYCAEHGQR--LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
            L  Y   H  +   L++EYC     QD+    D    ++             + L + H
Sbjct: 63  RL--YDVLHSDKKLTLVFEYCD----QDLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCH 116

Query: 629 EICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
                 ++HR+ K  N+L++ +  + ++D GLA
Sbjct: 117 ---SHNVLHRDLKPQNLLINKNGELKLADFGLA 146

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 44.7 bits (106), Expect = 9e-05
 Identities = 43/181 (23%), Positives = 76/181 (41%), Gaps = 39/181 (21%)

Query: 505 QQYTNSFSQE-------NLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLE 556
            QY   F  E         IG G  G V++A+     +++A+KK+      +      L 
Sbjct: 1   DQYEFPFCDEVSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALR 60

Query: 557 LVNNIDRIRHANIVELKGYC-----AEHGQR---LLIYEYCSNGTLQDMLHSDDELKNNL 608
            +  +  ++H N+V L   C       +  +    L++E+C           + +L   L
Sbjct: 61  EIKILQLLKHENVVNLIEICRTKATPYNRYKGSFYLVFEFC-----------EHDLAGLL 109

Query: 609 SWNTRIRMALGAARA--------LEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGL 660
           S N  ++  L   +         L Y+H   +  I+HR+ K+ANIL+  D  + ++D GL
Sbjct: 110 S-NKNVKFTLSEIKKVMKMLLNGLYYIH---RNKILHRDMKAANILITKDGILKLADFGL 165

Query: 661 A 661
           A
Sbjct: 166 A 166

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 22/82 (26%)

Query: 104 SIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSG 163
           +++ +DLSNN +                + D  F G        L  L  + L+ N L+ 
Sbjct: 1   NLKSLDLSNNRLT--------------VIPDGAFKG--------LPNLKVLDLSGNNLTS 38

Query: 164 EIPDAFQSLTGLINLDLSSNNL 185
             P+AF  L  L +LDLS NNL
Sbjct: 39  ISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 45.0 bits (107), Expect = 1e-04
 Identities = 13/24 (54%), Positives = 14/24 (58%)

Query: 442 MMMPPPPPPPPPPPPPPPPPPPPP 465
             +P PP PP   PPPPPPPP   
Sbjct: 256 TRLPAPPQPPEEEPPPPPPPPEDD 279

Length = 584

>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic subunit; Provisional

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 10/153 (6%)

Query: 517 IGAGMLGSVYRAQLPDGKL--LAVKKLDKRASSQQKD-DEFLELVNNIDRIRHANIVELK 573
           +G G  G V  A   +     +A+K+ +K    +QK  D        ++ I H   V L 
Sbjct: 38  LGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLY 97

Query: 574 GYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQP 633
           G   +     L+ E+   G     L  +    N++      ++ L      EYL  +   
Sbjct: 98  GSFKDESYLYLVLEFVIGGEFFTFLRRNKRFPNDVGCFYAAQIVL----IFEYLQSL--- 150

Query: 634 PIVHRNFKSANILLDDDLAVSVSDCGLAPLISS 666
            IV+R+ K  N+LLD D  + ++D G A ++ +
Sbjct: 151 NIVYRDLKPENLLLDKDGFIKMTDFGFAKVVDT 183

Length = 340

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 52/237 (21%), Positives = 101/237 (42%), Gaps = 40/237 (16%)

Query: 443 MMPPPPPPPPPPPPPPPP--------------PPPPPVVEKVIVKPIVPAEGTAVKTSTK 488
           M P  PPP  P P                   P P       +  P+ P        S+ 
Sbjct: 1   MKPIQPPPGVPLPSTARHTTKSRPRRRPDLTLPLPQRDPSLAVPLPLPP-------PSSS 53

Query: 489 TAKPFTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASS 547
           ++   +++ S +  S  +  +   + N IG+G  G+VY+    P G+L A+K +      
Sbjct: 54  SSSSSSSSASGSAPSAAKSLSELERVNRIGSGAGGTVYKVIHRPTGRLYALKVI----YG 109

Query: 548 QQKDDEFLELVNNIDRIR---HANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDEL 604
             +D    ++   I+ +R   H N+V+       +G+  ++ E+   G+L+    +D++ 
Sbjct: 110 NHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLEFMDGGSLEGTHIADEQF 169

Query: 605 KNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
             +++     R  L     + YLH   +  IVHR+ K +N+L++    V ++D G++
Sbjct: 170 LADVA-----RQILSG---IAYLH---RRHIVHRDIKPSNLLINSAKNVKIADFGVS 215

Length = 353

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 20/153 (13%)

Query: 517 IGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           IG G  G VY+ +    G+++A+KK+   +  +      +  ++ +  ++H NIV L+  
Sbjct: 8   IGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDV 67

Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQP-- 633
             +  +  LI+E+ S     D+    D L             + A     YL++I Q   
Sbjct: 68  LMQESRLYLIFEFLS----MDLKKYLDSLPKGQY--------MDAELVKSYLYQILQGIL 115

Query: 634 -----PIVHRNFKSANILLDDDLAVSVSDCGLA 661
                 ++HR+ K  N+L+D+   + ++D GLA
Sbjct: 116 FCHSRRVLHRDLKPQNLLIDNKGVIKLADFGLA 148

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|220596 pfam10138, Tellurium_res, Tellurium resistance protein

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 14/22 (63%), Positives = 14/22 (63%)

Query: 445 PPPPPPPPPPPPPPPPPPPPPV 466
            P PPP P PP P PPP  PPV
Sbjct: 3   APVPPPAPAPPAPAPPPAAPPV 24

Members of this family confer resistance to the metalloid element tellurium and its salts. Length = 98

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 14/22 (63%), Positives = 15/22 (68%)

Query: 444 MPPPPPPPPPPPPPPPPPPPPP 465
           +P P P PPPPPPPP PP P  
Sbjct: 266 LPEPEPQPPPPPPPPEPPEPEE 287

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 43/156 (27%), Positives = 84/156 (53%), Gaps = 23/156 (14%)

Query: 516 LIGAGMLGSVY---RAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNI-DRIRHANIV 570
           ++G G  G V+   +   PD G+L A+K L K+A+ + +D    ++  +I   + H  IV
Sbjct: 3   VLGQGSFGKVFLVRKITGPDAGQLYAMKVL-KKATLKVRDRVRTKMERDILAEVNHPFIV 61

Query: 571 ELKGYCAEHGQRLLIYEYCSNGTL-----QDMLHSDDELKNNLSWNTRIRMALGAARALE 625
           +L       G+  LI ++   G L     ++++ +++++K  L+      +AL    AL+
Sbjct: 62  KLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLA-----ELAL----ALD 112

Query: 626 YLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           +LH +    I++R+ K  NILLD++  + ++D GL+
Sbjct: 113 HLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLS 145

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 13/155 (8%)

Query: 511 FSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNI-DRIRHAN 568
           F     +G G  G V  A+    G+  A+K L KR   + K  + +    +I   + H  
Sbjct: 20  FEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPF 79

Query: 569 IVE-LKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEY 626
           IV  +  +  E   R+  + E+   G L   L       N+++      + L    A EY
Sbjct: 80  IVNMMCSFQDE--NRVYFLLEFVVGGELFTHLRKAGRFPNDVAKFYHAELVL----AFEY 133

Query: 627 LHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           LH      I++R+ K  N+LLD+   V V+D G A
Sbjct: 134 LHSK---DIIYRDLKPENLLLDNKGHVKVTDFGFA 165

Length = 329

>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 8/105 (7%)

Query: 251 PFNSTVAPSRPPTSSVTPPPAPPFFGPRPVSGSSPVSRTPPSQHTPGKQADGPTALEDSN 310
              +T  PS   +   T  PAP      P +G++P +   P+  TPG     P     + 
Sbjct: 217 SPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPANATPAP 276

Query: 311 SGKKKSSTTKKIVWISIAGVLLFVILALVFL----LFMPRCIKRR 351
              +   T  +I+ I+I       I+A VFL      + R  +RR
Sbjct: 277 EASRYELTVTQIIQIAIPA----SIIACVFLGSCACCLHRRCRRR 317

Length = 401

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 10/159 (6%)

Query: 517 IGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNI-DRIRHANIVELKG 574
           +G G  G V   Q+ + GK+ A KKLDK+   ++  ++   L   I +++    IV L  
Sbjct: 1   LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNL-A 59

Query: 575 YCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQP 633
           Y  E    L L+    + G L+   H  +  +  L     I  +      + +LH +   
Sbjct: 60  YAFESKTHLCLVMSLMNGGDLK--YHIYNVGERGLEMERVIHYSAQITCGILHLHSM--- 114

Query: 634 PIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG-SVSQ 671
            IV+R+ K  N+LLDD     +SD GLA  +  G +++Q
Sbjct: 115 DIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKTITQ 153

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 16/66 (24%), Positives = 23/66 (34%)

Query: 427 PRRDDHEIDMSSLDMMMMPPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTS 486
              +   + +  L   ++  P   P P P PP   P PP   +   +P  P      K  
Sbjct: 32  VGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPE 91

Query: 487 TKTAKP 492
            K  KP
Sbjct: 92  KKPKKP 97

Length = 244

>gnl|CDD|237866 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 24/93 (25%), Positives = 32/93 (34%), Gaps = 1/93 (1%)

Query: 409 IPHAQNEQERNKQRMSTIPRRDDHEIDMSSLDMMMMPPPPPPPPPPPPPPPPPPPPPVVE 468
           +P A + +    QR+  I  R D  I  + L       P P    P P   P P P  V 
Sbjct: 362 LPSASDAESALLQRVERIETRLDMSIPANLLHNAPQAAPAPSAAAPEPKHQPAPEPRPVL 421

Query: 469 KVIVKPIVPAEGTAVKTSTKTAKPFTTARSFTI 501
                   P    AV++   T +     RS T 
Sbjct: 422 APTPASGEP-NAAAVRSMWSTVRDKVRQRSRTT 453

Length = 584

>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 45/155 (29%), Positives = 68/155 (43%), Gaps = 25/155 (16%)

Query: 516 LIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNN--IDRIRHANIVEL 572
           L+G G  G V    +   GK  A+K L K+     KD+    L  +  +   RH  +  L
Sbjct: 2   LLGKGTFGKVILVREKATGKYYAMKIL-KKEVIIAKDEVAHTLTESRVLQNTRHPFLTAL 60

Query: 573 KGYCAEHGQRLLIYEYCSNGTL-----QDMLHSDDELKNNLSWNTRIRMALGA--ARALE 625
           K     H +   + EY + G L     ++ + S+D          R R   GA    AL 
Sbjct: 61  KYSFQTHDRLCFVMEYANGGELFFHLSRERVFSED----------RARF-YGAEIVSALG 109

Query: 626 YLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGL 660
           YLH  C   +V+R+ K  N++LD D  + ++D GL
Sbjct: 110 YLHS-CD--VVYRDLKLENLMLDKDGHIKITDFGL 141

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Length = 323

>gnl|CDD|173627 cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 7/102 (6%)

Query: 546 SSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELK 605
           S  +    F E  + + ++ H ++V+L G C      +++ EY   G L   LH +   K
Sbjct: 40  SDHRDSLAFFETASLMSQLSHKHLVKLYGVCVRDEN-IMVEEYVKFGPLDVFLHRE---K 95

Query: 606 NNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILL 647
           NN+S + ++ +A   A AL YL +     +VH N    NIL+
Sbjct: 96  NNVSLHWKLDVAKQLASALHYLEDK---KLVHGNVCGKNILV 134

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 259

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 15/150 (10%)

Query: 517 IGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN---IVEL 572
           +G G  G V+ A+  D G+++A+K++ K  S   K +E   ++   D +       +V+L
Sbjct: 9   VGQGGYGQVFLAKKKDTGEIVALKRMKK--SLLFKLNEVRHVLTERDILTTTKSEWLVKL 66

Query: 573 KGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEIC 631
             Y  +  + L L  EY   G  + +L++   L  +   + R  MA     A++ LHE+ 
Sbjct: 67  L-YAFQDDEYLYLAMEYVPGGDFRTLLNNLGVLSED---HARFYMAEMFE-AVDALHEL- 120

Query: 632 QPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
               +HR+ K  N L+D    + ++D GL+
Sbjct: 121 --GYIHRDLKPENFLIDASGHIKLTDFGLS 148

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 43.0 bits (102), Expect = 3e-04
 Identities = 45/169 (26%), Positives = 70/169 (41%), Gaps = 31/169 (18%)

Query: 517 IGAGMLGSVYRAQL---PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR---HANIV 570
           IG G  G VY+A+     DGK  A+KK   +   +Q           I  +R   H N+V
Sbjct: 8   IGRGTYGRVYKAKRKNGKDGKEYAIKKF--KGDKEQYTGISQSACREIALLRELKHENVV 65

Query: 571 ELKGYCAEHGQRL--LIYEYCSNGTLQDM-LHSDDELKNNLSWNTRIRMAL------GAA 621
            L     EH  +   L+++Y  +   Q +  H        +S    +  +L      G  
Sbjct: 66  SLVEVFLEHADKSVYLLFDYAEHDLWQIIKFHRQ---AKRVSIPPSMVKSLLWQILNG-- 120

Query: 622 RALEYLHEICQPPIVHRNFKSANILL----DDDLAVSVSDCGLAPLISS 666
             + YLH      ++HR+ K ANIL+     +   V + D GLA L ++
Sbjct: 121 --VHYLHS---NWVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNA 164

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|220596 pfam10138, Tellurium_res, Tellurium resistance protein

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 12/21 (57%), Positives = 12/21 (57%)

Query: 445 PPPPPPPPPPPPPPPPPPPPP 465
           P  P PPP P PP P PPP  
Sbjct: 1   PAAPVPPPAPAPPAPAPPPAA 21

Members of this family confer resistance to the metalloid element tellurium and its salts. Length = 98

>gnl|CDD|220596 pfam10138, Tellurium_res, Tellurium resistance protein

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 13/23 (56%), Positives = 13/23 (56%)

Query: 445 PPPPPPPPPPPPPPPPPPPPPVV 467
             P PPP P PP P PPP  P V
Sbjct: 2   AAPVPPPAPAPPAPAPPPAAPPV 24

Members of this family confer resistance to the metalloid element tellurium and its salts. Length = 98

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 43.0 bits (101), Expect = 4e-04
 Identities = 16/38 (42%), Positives = 18/38 (47%)

Query: 445 PPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTA 482
             P P  PPPPPPP  PP P   +     P  PA+  A
Sbjct: 53  AAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNA 90

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 42.8 bits (100), Expect = 4e-04
 Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 21/172 (12%)

Query: 500 TIASLQQYTNSFSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELV 558
           +I S+      +++   IG G  G+VY A  +  G+ +A+++++ +   QQ   E +  +
Sbjct: 11  SIVSVGDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQ---QQPKKELI--I 65

Query: 559 NNIDRIR---HANIVE-LKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTR 613
           N I  +R   + NIV  L  Y    G  L ++ EY + G+L D++      +  ++   R
Sbjct: 66  NEILVMRENKNPNIVNYLDSYLV--GDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCR 123

Query: 614 IRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS 665
                   +ALE+LH      ++HR+ KS NILL  D +V ++D G    I+
Sbjct: 124 -----ECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQIT 167

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 42.4 bits (99), Expect = 4e-04
 Identities = 40/167 (23%), Positives = 81/167 (48%), Gaps = 11/167 (6%)

Query: 500 TIASLQQYTNSFSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELV 558
           TI S+      +++   IG G  G+V+ A  +  G+ +A+K+++ +   Q K +  +  +
Sbjct: 10  TIVSIGDPKKKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQ--KQPKKELIINEI 67

Query: 559 NNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMAL 618
             +  +++ NIV          +  ++ EY + G+L D++      +  ++   R     
Sbjct: 68  LVMKELKNPNIVNFLDSFLVGDELFVVMEYLAGGSLTDVVTETCMDEAQIAAVCR----- 122

Query: 619 GAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS 665
              +ALE+LH      ++HR+ KS N+LL  D +V ++D G    I+
Sbjct: 123 ECLQALEFLH---ANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQIT 166

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

 Score = 42.7 bits (100), Expect = 4e-04
 Identities = 45/150 (30%), Positives = 69/150 (46%), Gaps = 14/150 (9%)

Query: 516 LIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNI--DRIRHANIVEL 572
           +IG G  G V  A+   DG   AVK L K+   ++K+   +    N+    ++H  +V L
Sbjct: 2   VIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGL 61

Query: 573 KGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRM-ALGAARALEYLHEI 630
             Y  +  ++L  + +Y + G L    H   E         R R  A   A A+ YLH +
Sbjct: 62  H-YSFQTAEKLYFVLDYVNGGEL--FFHLQRE---RCFLEPRARFYAAEVASAIGYLHSL 115

Query: 631 CQPPIVHRNFKSANILLDDDLAVSVSDCGL 660
               I++R+ K  NILLD    V ++D GL
Sbjct: 116 ---NIIYRDLKPENILLDSQGHVVLTDFGL 142

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. Length = 321

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.6 bits (100), Expect = 5e-04
 Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 28/152 (18%)

Query: 103 SSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLS 162
           S++  +DLSNN I                         + SSL+ L  L+ + L+NN L 
Sbjct: 209 SALEELDLSNNSI-----------------------IELLSSLSNLKNLSGLELSNNKLE 245

Query: 163 GEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLPLR 222
            ++P++  +L+ L  LDLS+N +S     SL +L+ L  L L  N LS  L ++  L L 
Sbjct: 246 -DLPESIGNLSNLETLDLSNNQISS--ISSLGSLTNLRELDLSGNSLSNALPLIALLLLL 302

Query: 223 DLNIENNLFSGPIPEK--MLQIPNFRKDGNPF 252
              + N L +    E      + N     N  
Sbjct: 303 LELLLNLLLTLKALELKLNSILLNNNILSNGE 334

Length = 394

>gnl|CDD|222828 PHA01732, PHA01732, proline-rich protein

 Score = 39.3 bits (91), Expect = 5e-04
 Identities = 16/47 (34%), Positives = 19/47 (40%)

Query: 445 PPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAK 491
            PP P PPPPP PP P P P V       P +    +      + A 
Sbjct: 16  LPPAPVPPPPPAPPAPVPEPTVKPVNAEAPKIREAQSKRGQKQQKAG 62

Length = 94

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 42.6 bits (100), Expect = 5e-04
 Identities = 13/38 (34%), Positives = 14/38 (36%)

Query: 446 PPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAV 483
           PPPPPP      P P  PPP           P +  A 
Sbjct: 43  PPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAA 80

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 42.6 bits (101), Expect = 5e-04
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 622 RALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSHNLT 677
           +AL+Y+H      ++HR+ K +NILL+ D  V ++D GLA  +S    +  +  LT
Sbjct: 118 KALKYIH---SGNVIHRDLKPSNILLNSDCRVKLADFGLARSLSELEENPENPVLT 170

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

 Score = 42.4 bits (99), Expect = 5e-04
 Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 13/156 (8%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLEL--VNNIDRIR 565
           +S+ +   +G G   +VY+ +   +GKL+A+K +  +   +++   F  +   + +  ++
Sbjct: 5   DSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQ---EEEGTPFTAIREASLLKGLK 61

Query: 566 HANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALE 625
           HANIV L           L++EY      Q M    D+    L             R L 
Sbjct: 62  HANIVLLHDIIHTKETLTLVFEYVHTDLCQYM----DKHPGGLHPENVKLFLFQLLRGLS 117

Query: 626 YLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           Y+H   Q  I+HR+ K  N+L+ D   + ++D GLA
Sbjct: 118 YIH---QRYILHRDLKPQNLLISDTGELKLADFGLA 150

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 and is inhibited by the p21 cell cycle inhibitor. It has also been shown to interact with the membrane-associated cyclin Y, which recruits the protein to the plasma membrane. Length = 303

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 42/163 (25%), Positives = 80/163 (49%), Gaps = 20/163 (12%)

Query: 511 FSQENL-----IGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI 564
           F+ E+L     IG G  G+V +    P G ++AVK++  R++  +K+ +   L+ ++D +
Sbjct: 1   FTAEDLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRI--RSTVDEKEQK--RLLMDLDVV 56

Query: 565 RHA----NIVELKGYCAEHGQRLLIYEY--CSNGTLQDMLHSDDELKNNLSWNTRIRMAL 618
             +     IV+  G     G   +  E    S       ++  + LK+ +      ++A+
Sbjct: 57  MRSSDCPYIVKFYGALFREGDCWICMELMDISLDKFYKYVY--EVLKSVIPEEILGKIAV 114

Query: 619 GAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
              +AL YL E  +  I+HR+ K +NILLD +  + + D G++
Sbjct: 115 ATVKALNYLKEELK--IIHRDVKPSNILLDRNGNIKLCDFGIS 155

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 42.4 bits (99), Expect = 5e-04
 Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 21/172 (12%)

Query: 500 TIASLQQYTNSFSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELV 558
           +I S+      +++   IG G  G+VY A  +  G+ +A+K+++ +   QQ   E +  +
Sbjct: 10  SIVSVGDPKKKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQ---QQPKKELI--I 64

Query: 559 NNIDRIR---HANIVE-LKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTR 613
           N I  +R   + NIV  L  Y    G  L ++ EY + G+L D++      +  ++   R
Sbjct: 65  NEILVMRENKNPNIVNYLDSYLV--GDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCR 122

Query: 614 IRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS 665
                   +AL++LH      ++HR+ KS NILL  D +V ++D G    I+
Sbjct: 123 -----ECLQALDFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQIT 166

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|216368 pfam01213, CAP_N, Adenylate cyclase associated (CAP) N terminal

 Score = 42.1 bits (99), Expect = 5e-04
 Identities = 12/18 (66%), Positives = 13/18 (72%)

Query: 449 PPPPPPPPPPPPPPPPPV 466
           P  PPPPPPPPPP  P +
Sbjct: 230 PSAPPPPPPPPPPSVPTI 247

Length = 313

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.3 bits (100), Expect = 6e-04
 Identities = 32/113 (28%), Positives = 41/113 (36%), Gaps = 28/113 (24%)

Query: 131 FLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELP 190
            LS N  +G IP  L +L                         GL  LDLS N L  +  
Sbjct: 57  CLSLN-ETGRIPRGLQSL-----------------LQGLTKGCGLQELDLSDNALGPDGC 98

Query: 191 PSLENLSQLTTL---HLQNNQLSGT-----LDVLQDLP--LRDLNIENNLFSG 233
             LE+L + ++L    L NN L           L+DLP  L  L +  N   G
Sbjct: 99  GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG 151

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 42.2 bits (99), Expect = 6e-04
 Identities = 12/21 (57%), Positives = 12/21 (57%)

Query: 445 PPPPPPPPPPPPPPPPPPPPP 465
           PPPPPP      P P  PPPP
Sbjct: 43  PPPPPPSTAAAAPAPAAPPPP 63

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

 Score = 41.9 bits (98), Expect = 6e-04
 Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 21/159 (13%)

Query: 516 LIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKG 574
           ++G G  G     Q +   +  A+K++    SS   +D   E V  + +++H NIV  K 
Sbjct: 7   VVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVL-LAKMKHPNIVAFKE 65

Query: 575 YCAEHGQRLLIYEYCSNGTL-------QDMLHSDDELKNNLSWNTRIRMALGAARALEYL 627
                G   ++ EYC  G L       +  L  +D +   L W  +  M LG    ++++
Sbjct: 66  SFEADGHLYIVMEYCDGGDLMQKIKLQRGKLFPEDTI---LQWFVQ--MCLG----VQHI 116

Query: 628 HEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS 666
           HE     ++HR+ KS NI L  +  V + D G A L++S
Sbjct: 117 HE---KRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTS 152

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activation of Vav2 and contributes to prolactin-mediated motility of breast cancer cells. Length = 255

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 42.4 bits (100), Expect = 6e-04
 Identities = 39/152 (25%), Positives = 64/152 (42%), Gaps = 18/152 (11%)

Query: 516 LIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNIDRI-----RHANI 569
           ++G G  G V  A+L    +L AVK L K    Q  D   +E      R+     +H  +
Sbjct: 2   VLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDD---VECTMTEKRVLALAGKHPFL 58

Query: 570 VELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
            +L   C +   RL  + EY + G L   +          +       A      L++LH
Sbjct: 59  TQLHS-CFQTKDRLFFVMEYVNGGDLMFHIQRSGRFDEPRA----RFYAAEIVLGLQFLH 113

Query: 629 EICQPPIVHRNFKSANILLDDDLAVSVSDCGL 660
           E     I++R+ K  N+LLD +  + ++D G+
Sbjct: 114 E---RGIIYRDLKLDNVLLDSEGHIKIADFGM 142

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.0 bits (101), Expect = 6e-04
 Identities = 31/128 (24%), Positives = 42/128 (32%), Gaps = 11/128 (8%)

Query: 373  EARDNGTLALPTNQMEKDASVKPKEDHRSEMRRMGAIPHAQNEQERNKQRMSTIPRRDDH 432
            E   +    +P  +  +D     +       RR+G    A +  +R        PRR   
Sbjct: 2637 EPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQR--------PRRRAA 2688

Query: 433  EIDMSSLDMMMMPPPPPP---PPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKT 489
               + SL  +  PPPPPP   P P       P PP         P +PA           
Sbjct: 2689 RPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGP 2748

Query: 490  AKPFTTAR 497
            A P   AR
Sbjct: 2749 ATPGGPAR 2756

Length = 3151

>gnl|CDD|133238 cd05107, PTKc_PDGFR_beta, Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

 Score = 42.3 bits (99), Expect = 7e-04
 Identities = 26/66 (39%), Positives = 31/66 (46%)

Query: 536 LAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQ 595
           +AVK L   A S +K     EL        H NIV L G C + G   +I EYC  G L 
Sbjct: 70  VAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACTKGGPIYIITEYCRYGDLV 129

Query: 596 DMLHSD 601
           D LH +
Sbjct: 130 DYLHRN 135

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-DD induce PDGFR beta homodimerization. PDGFR signaling plays many roles in normal embryonic development and adult physiology. PDGFR beta signaling leads to a variety of cellular effects including the stimulation of cell growth and chemotaxis, as well as the inhibition of apoptosis and GAP junctional communication. It is critical in normal angiogenesis as it is involved in the recruitment of pericytes and smooth muscle cells essential for vessel stability. Aberrant PDGFR beta expression is associated with some human cancers. The continuously-active fusion proteins of PDGFR beta with COL1A1 and TEL are associated with dermatofibrosarcoma protuberans (DFSP) and a subset of chronic myelomonocytic leukemia (CMML), respectively. Length = 401

>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

 Score = 41.9 bits (98), Expect = 7e-04
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 9/105 (8%)

Query: 558 VNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSW-NTRIRM 616
           V+ +  ++HANIV L           L++EY  +    D+    D   N +S  N +I M
Sbjct: 54  VSLLKNLKHANIVTLHDIIHTERCLTLVFEYLDS----DLKQYLDNCGNLMSMHNVKIFM 109

Query: 617 ALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
                R L Y H+     I+HR+ K  N+L+++   + ++D GLA
Sbjct: 110 -FQLLRGLSYCHK---RKILHRDLKPQNLLINEKGELKLADFGLA 150

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filaments (PHFs) and stimulate Tau phosphorylation. As AD progresses, phosphorylated Tau aggregates and forms PHFs, which leads to the formation of neurofibrillary tangles (NFTs). In human glioma cells, PCTAIRE-3 induces cell cycle arrest and cell death. Length = 288

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 41.8 bits (98), Expect = 8e-04
 Identities = 12/21 (57%), Positives = 12/21 (57%)

Query: 445 PPPPPPPPPPPPPPPPPPPPP 465
           PPPP      P P  PPPPPP
Sbjct: 45  PPPPSTAAAAPAPAAPPPPPP 65

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 41.8 bits (98), Expect = 8e-04
 Identities = 12/21 (57%), Positives = 12/21 (57%)

Query: 445 PPPPPPPPPPPPPPPPPPPPP 465
           PPPPP      P P  PPPPP
Sbjct: 44  PPPPPSTAAAAPAPAAPPPPP 64

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 42.6 bits (100), Expect = 8e-04
 Identities = 12/22 (54%), Positives = 13/22 (59%)

Query: 444  MPPPPPPPPPPPPPPPPPPPPP 465
            +PP  P  PP P  PPPP P P
Sbjct: 2900 LPPDQPERPPQPQAPPPPQPQP 2921

Length = 3151

>gnl|CDD|173643 cd05077, PTK_Jak1_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 41.5 bits (97), Expect = 8e-04
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 6/94 (6%)

Query: 554 FLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTR 613
           F E  + + ++ H +IV L G C    + +++ E+   G L   +H   ++   L+   +
Sbjct: 51  FFETASMMRQVSHKHIVLLYGVCVRDVENIMVEEFVEFGPLDLFMHRKSDV---LTTPWK 107

Query: 614 IRMALGAARALEYLHEICQPPIVHRNFKSANILL 647
            ++A   A AL YL +     +VH N  + NILL
Sbjct: 108 FKVAKQLASALSYLED---KDLVHGNVCTKNILL 138

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 262

>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

 Score = 41.9 bits (98), Expect = 8e-04
 Identities = 47/150 (31%), Positives = 70/150 (46%), Gaps = 14/150 (9%)

Query: 516 LIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNI--DRIRHANIVEL 572
           +IG G  G V  A+   DGK  AVK L K+    +K+ + +    N+    ++H  +V L
Sbjct: 2   VIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGL 61

Query: 573 KGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRM-ALGAARALEYLHEI 630
             Y  +  ++L  + ++ + G L   L  +           R R  A   A AL YLH I
Sbjct: 62  H-YSFQTTEKLYFVLDFVNGGELFFHLQRERSFPE-----PRARFYAAEIASALGYLHSI 115

Query: 631 CQPPIVHRNFKSANILLDDDLAVSVSDCGL 660
               IV+R+ K  NILLD    V ++D GL
Sbjct: 116 ---NIVYRDLKPENILLDSQGHVVLTDFGL 142

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. Length = 325

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 41.4 bits (97), Expect = 9e-04
 Identities = 12/22 (54%), Positives = 12/22 (54%)

Query: 445 PPPPPPPPPPPPPPPPPPPPPV 466
           PPP      P P  PPPPPPP 
Sbjct: 46  PPPSTAAAAPAPAAPPPPPPPA 67

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|216368 pfam01213, CAP_N, Adenylate cyclase associated (CAP) N terminal

 Score = 41.7 bits (98), Expect = 9e-04
 Identities = 14/23 (60%), Positives = 14/23 (60%)

Query: 446 PPPPPPPPPPPPPPPPPPPPVVE 468
           P  PPPPPPPPPP  P     VE
Sbjct: 230 PSAPPPPPPPPPPSVPTISNSVE 252

Length = 313

>gnl|CDD|220596 pfam10138, Tellurium_res, Tellurium resistance protein

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 13/24 (54%), Positives = 13/24 (54%)

Query: 447 PPPPPPPPPPPPPPPPPPPVVEKV 470
           P  P PPP P PP P PPP    V
Sbjct: 1   PAAPVPPPAPAPPAPAPPPAAPPV 24

Members of this family confer resistance to the metalloid element tellurium and its salts. Length = 98

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 13/29 (44%), Positives = 15/29 (51%)

Query: 437 SSLDMMMMPPPPPPPPPPPPPPPPPPPPP 465
           ++      P PPPPPPPP PP P   P  
Sbjct: 263 ATRLPEPEPQPPPPPPPPEPPEPEEEPDE 291

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 14/47 (29%), Positives = 15/47 (31%)

Query: 445 PPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAK 491
           PP  P  PP P PP P   P   +K       P      K   K   
Sbjct: 69  PPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQP 115

Length = 244

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 11/21 (52%), Positives = 11/21 (52%)

Query: 445 PPPPPPPPPPPPPPPPPPPPP 465
           P PPPPPP      P P  PP
Sbjct: 41  PAPPPPPPSTAAAAPAPAAPP 61

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|216368 pfam01213, CAP_N, Adenylate cyclase associated (CAP) N terminal

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 12/17 (70%), Positives = 12/17 (70%)

Query: 445 PPPPPPPPPPPPPPPPP 461
           P  PPPPPPPPPP  P 
Sbjct: 230 PSAPPPPPPPPPPSVPT 246

Length = 313

>gnl|CDD|216368 pfam01213, CAP_N, Adenylate cyclase associated (CAP) N terminal

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 436 MSSLDMMMMPPPPPPPPPPPPPPPPPPPPPVV 467
             +     +P      P  PPPPPPPPPP V 
Sbjct: 214 PVAAAKSALPAVSSSAPSAPPPPPPPPPPSVP 245

Length = 313

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 13/34 (38%), Positives = 14/34 (41%)

Query: 446  PPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAE 479
            PP  P  PP P  PPPP P        +P  P  
Sbjct: 2901 PPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPP 2934

Length = 3151

>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 12/149 (8%)

Query: 516 LIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNI--DRIRHANIVEL 572
           +IG G  G V  A+   + K  AVK L K+A  ++K+++ +    N+    ++H  +V L
Sbjct: 2   VIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGL 61

Query: 573 KGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRM-ALGAARALEYLHEIC 631
                   +   + +Y + G L   L      +       R R  A   A AL YLH + 
Sbjct: 62  HFSFQTADKLYFVLDYINGGELFYHLQ-----RERCFLEPRARFYAAEIASALGYLHSL- 115

Query: 632 QPPIVHRNFKSANILLDDDLAVSVSDCGL 660
              IV+R+ K  NILLD    + ++D GL
Sbjct: 116 --NIVYRDLKPENILLDSQGHIVLTDFGL 142

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is associated with increased blood pressure and body weight. SGK1 may also contribute to tumor growth, neurodegeneration, fibrosing disease, and ischemia. Length = 325

>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 16/152 (10%)

Query: 517 IGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN-----IV 570
           IG G  G VY+ +  D  ++ A+K L K+    +K+        NI  +R        IV
Sbjct: 1   IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNI-LVRTLLDESPFIV 59

Query: 571 ELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGA-ARALEYLHE 629
            LK          L+ +Y S G L   L  +     +     R +  +     ALE+LH+
Sbjct: 60  GLKFSFQTDSDLYLVTDYMSGGELFWHLQKEGRFSED-----RAKFYIAELVLALEHLHK 114

Query: 630 ICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
                IV+R+ K  NILLD    +++ D GL+
Sbjct: 115 ---YDIVYRDLKPENILLDATGHIALCDFGLS 143

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of yeast to environmental changes. Length = 330

>gnl|CDD|143373 cd07868, STKc_CDK8, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

 Score = 41.2 bits (96), Expect = 0.001
 Identities = 39/164 (23%), Positives = 75/164 (45%), Gaps = 22/164 (13%)

Query: 517 IGAGMLGSVYRAQLPDG---KLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELK 573
           +G G  G VY+A+  DG   +  A+K+++    S     E   L      ++H N++ L+
Sbjct: 9   VGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGISMSACREIALL----RELKHPNVISLQ 64

Query: 574 GYCAEHGQR--LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEY----- 626
                H  R   L+++Y  +    D+ H     + + +    +++  G  ++L Y     
Sbjct: 65  KVFLSHADRKVWLLFDYAEH----DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDG 120

Query: 627 LHEICQPPIVHRNFKSANILL----DDDLAVSVSDCGLAPLISS 666
           +H +    ++HR+ K ANIL+     +   V ++D G A L +S
Sbjct: 121 IHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNS 164

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDK8 phosphorylates cyclin H, a subunit of the general transcription factor TFIIH, which results in the inhibition of TFIIH-dependent phosphorylation of the C-terminal domain (CTD) of RNAP II, facilitating the inhibition of transcription. It has also been shown to promote transcription by a mechanism that is likely to involve RNAP II phosphorylation. CDK8 also functions as a stimulus-specific positive coregulator of p53 transcriptional responses. Length = 317

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 39/156 (25%), Positives = 75/156 (48%), Gaps = 17/156 (10%)

Query: 516 LIGAGMLGSVYRA-QLPDG---KLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           ++G+G  G+VY+   +PDG   K+    K+ +  +S + + E L+    +  +    +  
Sbjct: 14  VLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCR 73

Query: 572 LKGYCAEHGQRLLIYEYCSNGTLQDMLHSD-DELKNN--LSWNTRIRMALGAARALEYLH 628
           L G C     +L + +    G L D +  + D + +   L+W  +I      A+ + YL 
Sbjct: 74  LLGICLTSTVQL-VTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQI------AKGMSYLE 126

Query: 629 EICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI 664
           E+    +VHR+  + N+L+     V ++D GLA L+
Sbjct: 127 EV---RLVHRDLAARNVLVKSPNHVKITDFGLARLL 159

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 37/154 (24%), Positives = 64/154 (41%), Gaps = 13/154 (8%)

Query: 517 IGAGMLGSVYRA---QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELK 573
           +G+G  G+V +         K +AVK L    +     DE L   N + ++ +  IV + 
Sbjct: 3   LGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMI 62

Query: 574 GYCAEHGQRLLIYEYCSNGTLQDMLHSDDELK-NNLSWNTRIRMALGAARALEYLHEICQ 632
           G C E    +L+ E    G L   L  +  +   N+       +    +  ++YL E   
Sbjct: 63  GIC-EAESWMLVMELAELGPLNKFLQKNKHVTEKNI-----TELVHQVSMGMKYLEE--- 113

Query: 633 PPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS 666
              VHR+  + N+LL       +SD GL+  + +
Sbjct: 114 TNFVHRDLAARNVLLVTQHYAKISDFGLSKALGA 147

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. More recently, Syk expression has been detected in other cell types (including epithelial cells, vascular endothelial cells, neurons, hepatocytes, and melanocytes), suggesting a variety of biological functions in non-immune cells. Syk plays a critical role in maintaining vascular integrity and in wound healing during embryogenesis. It also regulates Vav3, which is important in osteoclast function including bone development. In breast epithelial cells, where Syk acts as a negative regulator for epidermal growth factor receptor (EGFR) signaling, loss of Syk expression is associated with abnormal proliferation during cancer development suggesting a potential role as a tumor suppressor. In mice, Syk has been shown to inhibit malignant transformation of mammary epithelial cells induced with murine mammary tumor virus (MMTV). Length = 257

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 14/46 (30%), Positives = 17/46 (36%)

Query: 445 PPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTA 490
           P P P  PP P P   P P P  ++ +  P  P          K A
Sbjct: 99  PEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAA 144

Length = 226

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 12/25 (48%), Positives = 13/25 (52%)

Query: 441 MMMMPPPPPPPPPPPPPPPPPPPPP 465
             +  PP PP   PPPPPPPP    
Sbjct: 256 TRLPAPPQPPEEEPPPPPPPPEDDD 280

Length = 584

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 12/23 (52%), Positives = 12/23 (52%)

Query: 443 MMPPPPPPPPPPPPPPPPPPPPP 465
             P PP   PPPPPPPP     P
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDP 282

Length = 584

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 13/21 (61%), Positives = 13/21 (61%)

Query: 445 PPPPPPPPPPPPPPPPPPPPP 465
           PPPPPPPP PP P   P  P 
Sbjct: 273 PPPPPPPPEPPEPEEEPDEPD 293

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 12/35 (34%), Positives = 12/35 (34%)

Query: 446 PPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEG 480
           P PPPPPP      P P  P        P  P   
Sbjct: 41  PAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPD 75

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.5 bits (97), Expect = 0.002
 Identities = 14/34 (41%), Positives = 15/34 (44%)

Query: 445  PPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPA 478
             P  PP P  PPPP P P PP   +    P  P 
Sbjct: 2904 QPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPP 2937

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.5 bits (97), Expect = 0.002
 Identities = 13/36 (36%), Positives = 14/36 (38%)

Query: 445  PPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEG 480
            P  P  PP P  PPPP P P        +P  P   
Sbjct: 2902 PDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPP 2937

Length = 3151

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 623 ALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQ 671
           ALEYLH      I+HR+ K  NILLD+   V ++D  +A  ++  +++ 
Sbjct: 112 ALEYLHS---KGIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTLTT 157

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|204405 pfam10146, zf-C4H2, Zinc finger-containing protein

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 17/91 (18%)

Query: 385 NQMEKDASVKPKEDHRSEM---RRMGAIPHAQNEQERNKQRMSTIPR--------RDDHE 433
            Q+  D +    E  +S+    RRMG I     E    K+ ++ + +           HE
Sbjct: 56  RQIHADINDMETEIKQSKSELERRMGKIARMHGEYNPLKESINEMRKLELGLEELPQLHE 115

Query: 434 IDMSSLDMMMMPPPPPPPPPPPPPPPPPPPP 464
            +   +       P   P PP P P PP  P
Sbjct: 116 EERQKIS------PATSPVPPVPLPDPPAFP 140

This is a family of proteins which appears to have a highly conserved zinc finger domain at the C terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members are annotated as being tumour-associated antigen HCA127 in humans but this could not confirmed. Length = 215

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 38/165 (23%)

Query: 517 IGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEF----LELVNNIDRIRHANIVE 571
           +G G  G VY+A Q+  G+++A+KK+       +KD  F    L  +  + +++H N+V 
Sbjct: 16  LGEGTFGEVYKARQIKTGRVVALKKI---LMHNEKDG-FPITALREIKILKKLKHPNVVP 71

Query: 572 LKGYCAEHG-----QRLLIYEYCSNGTLQDML--HSDDELKNNLSWNTRIR--------M 616
           L     E       +R  +Y          M+  + D +L   L  N  ++         
Sbjct: 72  LIDMAVERPDKSKRKRGSVY----------MVTPYMDHDLSGLLE-NPSVKLTESQIKCY 120

Query: 617 ALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
            L     + YLHE     I+HR+ K+ANIL+D+   + ++D GLA
Sbjct: 121 MLQLLEGINYLHE---NHILHRDIKAANILIDNQGILKIADFGLA 162

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 28/161 (17%)

Query: 511 FSQENLIGAGMLGSVY-----RAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR 565
           F++   IG G  G V+     R Q    +++A+K +D     ++ +DE  ++   I  + 
Sbjct: 6   FTKLERIGKGSFGEVFKGIDNRTQ----QVVAIKIID----LEEAEDEIEDIQQEITVLS 57

Query: 566 HANIVELKGYCAEH--GQRL-LIYEYCSNGTLQDMLHSD--DELKNNLSWNTRIRMALGA 620
             +   +  Y   +  G +L +I EY   G+  D+L +   DE +      T ++  L  
Sbjct: 58  QCDSPYVTKYYGSYLKGTKLWIIMEYLGGGSALDLLRAGPFDEFQ----IATMLKEIL-- 111

Query: 621 ARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
            + L+YLH       +HR+ K+AN+LL +   V ++D G+A
Sbjct: 112 -KGLDYLH---SEKKIHRDIKAANVLLSEQGDVKLADFGVA 148

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 40.2 bits (95), Expect = 0.002
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 3/40 (7%)

Query: 622 RALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           R L+YLH      ++HR+ K +NIL++ +  + + D GLA
Sbjct: 114 RGLKYLHS---ANVIHRDLKPSNILVNSNCDLKICDFGLA 150

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 16/160 (10%)

Query: 510 SFSQENLIGAGMLGSVYRAQL----PDGKLLAVKKLDKRASSQQ-KDDEFLELVNNI-DR 563
           +F    ++G G  G V+  +       GKL A+K L K    Q+ K  E       + + 
Sbjct: 1   NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEH 60

Query: 564 IRHANIVELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGA-A 621
           IR +  +    Y  +   +L LI +Y + G L   L   +  K        +++  G   
Sbjct: 61  IRQSPFLVTLHYAFQTDTKLHLILDYINGGELFTHLSQRERFKEQ-----EVQIYSGEIV 115

Query: 622 RALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
            ALE+LH++    I++R+ K  NILLD +  V ++D GL+
Sbjct: 116 LALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLS 152

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK1 plays a role in the regulation of translational control and transcriptional activation. It phosphorylates the transcription factors, CREB and NFkappaB. It also phosphorylates the nucleosomal proteins H3 and HMG-14. Increased phosphorylation of MEK1 is associated with the development of cerebral ischemic/hypoxic preconditioning. Length = 290

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 13/22 (59%), Positives = 13/22 (59%)

Query: 443 MMPPPPPPPPPPPPPPPPPPPP 464
            M P PP  P PP PP PP PP
Sbjct: 113 PMQPQPPVHPIPPLPPQPPLPP 134

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 42/170 (24%), Positives = 63/170 (37%), Gaps = 39/170 (22%)

Query: 83  AIILNGANLGGELGENL-GAFSSIR---VIDLSNNHIGGS-IPSILPVTMQNFFLSDNQF 137
            ++L    L G   E L  A  + R    ++L+NN IG + I ++               
Sbjct: 141 KLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE------------- 187

Query: 138 SGSIPSSLATLTLLTDMSLNNNLLSGE----IPDAFQSLTGLINLDLSSNNLSGE----- 188
                  L     L  + LNNN L+ E    + +   SL  L  L+L  NNL+       
Sbjct: 188 ------GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241

Query: 189 LPPSLENLSQLTTLHLQNNQL--SGTLDVLQDLP----LRDLNIENNLFS 232
               L     L TL L  N +   G  D+ + L     L +L++  N F 
Sbjct: 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 36/147 (24%), Positives = 71/147 (48%), Gaps = 11/147 (7%)

Query: 517 IGAGMLGSVY--RAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKG 574
           +G G   +VY  R++L D  L+A+K++ +    +      +  V+ +  ++HANIV L  
Sbjct: 14  LGEGTYATVYKGRSKLTD-NLVALKEI-RLEHEEGAPCTAIREVSLLKDLKHANIVTLHD 71

Query: 575 YCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPP 634
                    L++EY      +D+    D+  N+++ +          R L Y H   +  
Sbjct: 72  IIHTEKSLTLVFEYLD----KDLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCH---RRK 124

Query: 635 IVHRNFKSANILLDDDLAVSVSDCGLA 661
           ++HR+ K  N+L+++   + ++D GLA
Sbjct: 125 VLHRDLKPQNLLINERGELKLADFGLA 151

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may play a role in regulating neurite outgrowth. It can also associate with Trap (Tudor repeat associator with PCTAIRE-2), a physiological partner of PCTAIRE-2; with p11, a small dimeric protein with similarity to S100; and with 14-3-3 proteins, mediators of phosphorylation-dependent interactions in many different proteins. Length = 301

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 40/156 (25%), Positives = 77/156 (49%), Gaps = 22/156 (14%)

Query: 515 NLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEF----LELVNNIDRIRHANI 569
           N I  G  G VYRA+    G+++A+KKL       ++ + F    L  +N + +++H NI
Sbjct: 11  NRIEEGTYGVVYRARDKKTGEIVALKKLKME----KEKEGFPITSLREINILLKLQHPNI 66

Query: 570 VELK----GYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALE 625
           V +K    G  +   +  ++ EY  +  L+ ++   + +K     +    + L     + 
Sbjct: 67  VTVKEVVVG--SNLDKIYMVMEYVEH-DLKSLM---ETMKQPFLQSEVKCLMLQLLSGVA 120

Query: 626 YLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           +LH      I+HR+ K++N+LL++   + + D GLA
Sbjct: 121 HLH---DNWILHRDLKTSNLLLNNRGILKICDFGLA 153

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 14/150 (9%)

Query: 516 LIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNN--IDRIRHANIVEL 572
           L+G G  G V    +   G+  A+K L K+     KD+    L  N  +   RH  +  L
Sbjct: 2   LLGKGTFGKVILVKEKATGRYYAMKIL-KKEVIVAKDEVAHTLTENRVLQNSRHPFLTAL 60

Query: 573 KGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGA--ARALEYLHEI 630
           K     H +   + EY + G L   L  +     +     R R   GA    AL+YLH  
Sbjct: 61  KYSFQTHDRLCFVMEYANGGELFFHLSRERVFSED-----RARF-YGAEIVSALDYLHS- 113

Query: 631 CQPPIVHRNFKSANILLDDDLAVSVSDCGL 660
            +  +V+R+ K  N++LD D  + ++D GL
Sbjct: 114 -EKNVVYRDLKLENLMLDKDGHIKITDFGL 142

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, reduction in body weight accompanied by reduced sizes of multiple organs, and enhanced apoptosis in some cell types. PKB-alpha activity has been reported to be frequently elevated in breast and prostate cancers. In some cancer cells, PKB-alpha may act as a suppressor of metastasis. Length = 325

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 16/160 (10%)

Query: 517 IGAGMLGSVY----RAQLPDGKLLAVKKLDKRASSQ-QKDDEFLELVNNI-DRIRHANIV 570
           +G G  G V+          GKL A+K L K    Q  K  E       + + +R    +
Sbjct: 8   LGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFL 67

Query: 571 ELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGA-ARALEYLH 628
               Y  +   +L LI +Y + G L   L+  +    +      +R+ +     AL++LH
Sbjct: 68  VTLHYAFQTDTKLHLILDYVNGGELFTHLYQREHFTES-----EVRVYIAEIVLALDHLH 122

Query: 629 EICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
              Q  I++R+ K  NILLD +  V ++D GL+    +  
Sbjct: 123 ---QLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEE 159

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|218549 pfam05308, Mito_fiss_reg, Mitochondrial fission regulator

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 14/23 (60%), Positives = 15/23 (65%)

Query: 445 PPPPPPPPPPPPPPPPPPPPPVV 467
             P    PPPPPPPPPPPPP + 
Sbjct: 177 EEPVLEVPPPPPPPPPPPPPSLQ 199

In eukaryotes, this family of proteins induces mitochondrial fission. Length = 248

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 39.6 bits (92), Expect = 0.003
 Identities = 41/155 (26%), Positives = 76/155 (49%), Gaps = 16/155 (10%)

Query: 511 FSQENLIGAGMLGSVYRAQLPDGK-LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
           F++   IG G  G VY+      K ++A+K +D     ++ +DE  ++   I  +   + 
Sbjct: 6   FTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDL----EEAEDEIEDIQQEITVLSQCDS 61

Query: 570 VELKGYCAEH--GQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEY 626
             +  Y   +  G +L +I EY   G+  D+L      +  ++  T +R  L   + L+Y
Sbjct: 62  PYITRYYGSYLKGTKLWIIMEYLGGGSALDLLKPGPLEETYIA--TILREIL---KGLDY 116

Query: 627 LHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           LH   +   +HR+ K+AN+LL +   V ++D G+A
Sbjct: 117 LHSERK---IHRDIKAANVLLSEQGDVKLADFGVA 148

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|133209 cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 17/142 (11%)

Query: 514 ENLIGAGMLGSVYRA----QLPDGKL----LAVKKLDKRASSQQKDDEFLELVNNIDRIR 565
           E+L G G    +++         G+L    + +K LDK  S +   + F E  + + ++ 
Sbjct: 1   ESL-GQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDK--SHRNYSESFFEAASMMSQLS 57

Query: 566 HANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALE 625
           H ++V   G C    + +++ EY   G+L D     ++   N+SW  ++ +A   A AL 
Sbjct: 58  HKHLVLNYGVCVCGDESIMVQEYVKFGSL-DTYLKKNKNLINISW--KLEVAKQLAWALH 114

Query: 626 YLHEICQPPIVHRNFKSANILL 647
           +L +     + H N  + N+LL
Sbjct: 115 FLED---KGLTHGNVCAKNVLL 133

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 258

>gnl|CDD|216368 pfam01213, CAP_N, Adenylate cyclase associated (CAP) N terminal

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 435 DMSSLDMMMMPPPPPPPPPPPPPPPPPPPPPV 466
            +++    +       P  PPPPPPPPPP   
Sbjct: 214 PVAAAKSALPAVSSSAPSAPPPPPPPPPPSVP 245

Length = 313

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 40.3 bits (94), Expect = 0.004
 Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 9/76 (11%)

Query: 444  MPPPPPPPPPPPPPPPPPPPPPVVEKVIVKP------IVPAEGTAVKTSTKTAKPFTTAR 497
            +PPP    P  PPPPP PPPP +     V P        P+   A K +     P    R
Sbjct: 2828 LPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPP---VR 2884

Query: 498  SFTIASLQQYTNSFSQ 513
                 ++ + T SF+ 
Sbjct: 2885 RLARPAVSRSTESFAL 2900

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 40.3 bits (94), Expect = 0.004
 Identities = 12/21 (57%), Positives = 12/21 (57%)

Query: 445  PPPPPPPPPPPPPPPPPPPPP 465
            P PP P PP    P PPPP P
Sbjct: 2611 PAPPSPLPPDTHAPDPPPPSP 2631

Length = 3151

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 444 MPPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGT 481
             PP PP PP PP  P  P PP++  + ++     + T
Sbjct: 122 PIPPLPPQPPLPPMFPMQPLPPLLPDLPLEAWPATDKT 159

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

>gnl|CDD|218549 pfam05308, Mito_fiss_reg, Mitochondrial fission regulator

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 14/22 (63%), Positives = 14/22 (63%)

Query: 445 PPPPPPPPPPPPPPPPPPPPPV 466
           P   P    PPPPPPPPPPPP 
Sbjct: 175 PTEEPVLEVPPPPPPPPPPPPP 196

In eukaryotes, this family of proteins induces mitochondrial fission. Length = 248

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 39.6 bits (93), Expect = 0.004
 Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 13/163 (7%)

Query: 517 IGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           IG+G  G V  A     GK +A+KK+             L  +  +   +H NI+ ++  
Sbjct: 13  IGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDI 72

Query: 576 C---AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAA-RALEYLHEIC 631
                   + + +        L  ++HSD  L         IR  L    R L+Y+H   
Sbjct: 73  LRPPGADFKDVYVVMDLMESDLHHIIHSDQPLTEEH-----IRYFLYQLLRGLKYIHSAN 127

Query: 632 QPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSH 674
              ++HR+ K +N+L+++D  + + D G+A  +SS        
Sbjct: 128 ---VIHRDLKPSNLLVNEDCELRIGDFGMARGLSSSPTEHKYF 167

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	689
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.98
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.98
KOG0581	364	consensus Mitogen-activated protein kinase kinase	99.97
KOG0575	592	consensus Polo-like serine/threonine protein kinas	99.97
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.97
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.97
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.97
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	99.97
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.96
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.96
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.96
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	99.96
KOG0198	313	consensus MEKK and related serine/threonine protei	99.96
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.96
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.96
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.96
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.96
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.96
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.96
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.96
KOG0578	550	consensus p21-activated serine/threonine protein k	99.95
KOG0605	550	consensus NDR and related serine/threonine kinases	99.95
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.95
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.95
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.95
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.95
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.95
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.95
KOG3653	534	consensus Transforming growth factor beta/activin	99.95
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.95
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.95
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.95
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.95
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.95
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.94
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.94
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.94
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.94
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.94
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.94
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.94
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.94
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.94
KOG0589	426	consensus Serine/threonine protein kinase [General	99.94
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.94
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.94
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.94
KOG0586	596	consensus Serine/threonine protein kinase [General	99.94
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.94
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.94
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.94
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.94
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.94
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.94
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.94
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.94
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.94
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.94
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.94
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.94
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.94
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.94
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.94
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.94
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.94
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.93
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.93
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.93
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.93
PTZ00267	478	NIMA-related protein kinase; Provisional	99.93
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.93
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.93
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.93
PTZ00283	496	serine/threonine protein kinase; Provisional	99.93
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.93
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.93
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.93
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.93
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.93
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.93
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.93
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.93
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.93
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.93
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.93
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.93
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.93
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.93
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.93
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.93
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.93
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.93
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.93
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.93
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.93
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.93
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.93
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.93
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.93
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.93
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.93
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.93
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.93
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.93
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.92
PHA03212	391	serine/threonine kinase US3; Provisional	99.92
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.92
PTZ00036	440	glycogen synthase kinase; Provisional	99.92
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.92
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.92
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.92
PHA03211	461	serine/threonine kinase US3; Provisional	99.92
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.92
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.92
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.92
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.92
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.92
PHA02988	283	hypothetical protein; Provisional	99.92
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.92
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.92
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.92
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.92
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.92
PHA03209	357	serine/threonine kinase US3; Provisional	99.92
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.92
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.92
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.92
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.92
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.92
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.92
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.92
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.92
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.92
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.92
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.92
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.92
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.92
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.92
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.92
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.91
KOG0610	459	consensus Putative serine/threonine protein kinase	99.91
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.91
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.91
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.91
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.91
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.91
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.91
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.91
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.91
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.91
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.91
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.91
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.91
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.91
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.91
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.91
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.91
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.91
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.91
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.91
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.91
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.91
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.91
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.91
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.91
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.91
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.91
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.91
KOG0584	632	consensus Serine/threonine protein kinase [General	99.91
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.91
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.91
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.91
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.91
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.91
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.91
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.91
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.91
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.91
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.91
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.91
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.91
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.91
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.91
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.91
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.91
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.91
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.91
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.91
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.91
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.91
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.91
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.91
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.91
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.91
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.91
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.91
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.91
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.91
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.91
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.91
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.91
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.91
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.91
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.91
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.91
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.9
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.9
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.9
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.9
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.9
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.9
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.9
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.9
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.9
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.9
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.9
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.9
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.9
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.9
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.9
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.9
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.9
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.9
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.9
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.9
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.9
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.9
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.9
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.9
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.9
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.9
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.9
PHA03207	392	serine/threonine kinase US3; Provisional	99.9
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.9
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.9
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.9
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.9
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.9
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.9
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.9
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.9
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.9
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.9
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.9
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.9
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.9
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.9
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.9
PTZ00284	467	protein kinase; Provisional	99.9
PRK09188	365	serine/threonine protein kinase; Provisional	99.9
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.9
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.9
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.9
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.9
PHA03210	501	serine/threonine kinase US3; Provisional	99.9
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.9
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.9
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.9
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.9
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.9
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.9
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.9
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.9
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.9
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.9
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.9
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.9
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.9
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.9
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.9
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.9
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.9
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.9
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.9
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.89
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.89
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.89
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.89
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.89
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.89
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.89
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.89
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.89
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.89
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.89
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.89
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.89
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.89
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.89
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.89
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.89
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.89
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.89
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.89
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.89
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.89
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.89
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.89
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.89
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.89
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.89
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.89
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.89
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.89
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.89
PLN00009	294	cyclin-dependent kinase A; Provisional	99.89
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.89
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.89
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.89
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.89
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.89
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.89
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.89
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.89
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.89
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.89
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.89
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.89
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.89
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.89
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.89
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.89
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.89
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.89
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.89
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.89
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.89
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.89
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.88
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.88
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.88
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.88
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.88
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.88
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.88
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.88
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.88
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.88
KOG1152	772	consensus Signal transduction serine/threonine kin	99.88
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.88
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.88
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.88
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.88
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.88
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.88
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.88
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.88
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.88
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.88
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.88
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.88
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.88
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.88
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.88
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.88
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.87
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.87
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.87
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.87
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.87
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.87
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.87
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.87
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.87
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.87
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.87
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.87
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.87
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.87
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.86
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.86
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.86
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.86
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.86
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.86
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.86
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.86
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.85
PHA02882	294	putative serine/threonine kinase; Provisional	99.85
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.85
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.85
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.85
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.85
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.85
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.85
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.84
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.83
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.82
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.82
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.81
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.8
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.8
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.79
PRK10345	210	hypothetical protein; Provisional	99.79
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.79
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.79
PLN03150	623	hypothetical protein; Provisional	99.78
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.76
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.76
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.76
smart00090	237	RIO RIO-like kinase.	99.75
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.75
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.75
PRK12274	218	serine/threonine protein kinase; Provisional	99.75
PRK14879	211	serine/threonine protein kinase; Provisional	99.74
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.74
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.73
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.73
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.72
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.69
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.69
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.69
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.68
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.65
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.64
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.63
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.63
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.62
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.61
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.61
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.6
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.56
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.55
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.55
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.55
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.52
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.49
PLN00181	793	protein SPA1-RELATED; Provisional	99.49
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.48
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.46
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.43
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.42
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.42
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.42
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.4
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.37
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.36
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.33
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.28
PLN03150	623	hypothetical protein; Provisional	99.23
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	99.22
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.2
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.19
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.18
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.18
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.16
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	99.16
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.16
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.15
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	99.13
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.07
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.06
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.05
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.03
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.02
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.99
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.97
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	98.97
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.96
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	98.94
KOG3087	229	consensus Serine/threonine protein kinase [General	98.93
KOG0590	601	consensus Checkpoint kinase and related serine/thr	98.93
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.92
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.84
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.82
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.82
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.79
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.77
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.75
KOG1243	690	consensus Protein kinase [General function predict	98.73
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	98.67
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.67
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.61
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.59
COG0478	304	RIO-like serine/threonine protein kinase fused to	98.58
COG0661	517	AarF Predicted unusual protein kinase [General fun	98.55
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.47
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	98.42
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.39
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	98.37
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.37
KOG1266	458	consensus Protein kinase [Signal transduction mech	98.31
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.31
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.31
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.31
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.29
PRK09902	216	hypothetical protein; Provisional	98.23
KOG1235	538	consensus Predicted unusual protein kinase [Genera	98.19
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	98.14
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.12
PF01636	239	APH: Phosphotransferase enzyme family This family	98.1
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	98.1

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=6.8e-46  Score=450.52  Aligned_cols=441  Identities=27%  Similarity=0.449  Sum_probs=313.5

Q ss_pred             CCCeEEEEecCCCCCcccCccccCCCCCCEEEccCCcCCCCCCCccc--cccccccccCccCCCCCCcccCCCCCccEEE
Q 005587           78 ASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPSSLATLTLLTDMS  155 (689)
Q Consensus        78 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  155 (689)
                      ..+++.|+|++|++++.+|..+.++++|+.|+|++|++++.+|..+.  .+|+.|+|++|++.+.+|..+ .+++|+.|+
T Consensus       403 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~  481 (968)
T PLN00113        403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLD  481 (968)
T ss_pred             CCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEE
Confidence            35799999999999999999999999999999999999999887665  789999999999999999876 458999999


Q ss_pred             ccCCcCCCCCChhhcCCCCCCEEEccCCCCCCCCCCCccCCcccceeeccccccccccc-ccCCcc-ccccccccccCCC
Q 005587          156 LNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLD-VLQDLP-LRDLNIENNLFSG  233 (689)
Q Consensus       156 Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~Ls~N~l~g  233 (689)
                      |++|++++.+|..|.++++|+.|+|++|++++.+|..+..+++|++|+|++|++++.++ .+..++ |+.|+|++|+++|
T Consensus       482 ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  561 (968)
T PLN00113        482 LSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG  561 (968)
T ss_pred             CcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccc
Confidence            99999999999999999999999999999999999999999999999999999998774 567776 9999999999999


Q ss_pred             CCccccCC---CCCccccCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCC
Q 005587          234 PIPEKMLQ---IPNFRKDGNPFNSTVAPSRPPTSSVTPPPAPPFFGPRPVSGSSPVSRTPPSQHTPGKQADGPTALEDSN  310 (689)
Q Consensus       234 ~ip~~l~~---l~~l~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  310 (689)
                      .+|..+.+   |..|++++|++.+..|.......    .....+.+++..++..+.     .+.        ++     +
T Consensus       562 ~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~----~~~~~~~~n~~lc~~~~~-----~~~--------~~-----c  619 (968)
T PLN00113        562 EIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLA----INASAVAGNIDLCGGDTT-----SGL--------PP-----C  619 (968)
T ss_pred             cCChhHhcCcccCEEeccCCcceeeCCCcchhcc----cChhhhcCCccccCCccc-----cCC--------CC-----C
Confidence            99987765   55577899999876654321110    011111122222211100     000        00     0


Q ss_pred             CCCCCCCCCcceeeehhHHHHHHHHHHHHHHHHHhHHHhhcCccccccccccccccccCcchhccCCCCcCCCccccccc
Q 005587          311 SGKKKSSTTKKIVWISIAGVLLFVILALVFLLFMPRCIKRRGEVDRIFKRHQVGAFRGNNREEARDNGTLALPTNQMEKD  390 (689)
Q Consensus       311 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (689)
                      ....+  ...  .+++++++++++++++++++++++ +++|+.. +   ....+        .. . ..           
T Consensus       620 ~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~---~~~~~--------~~-~-~~-----------  669 (968)
T PLN00113        620 KRVRK--TPS--WWFYITCTLGAFLVLALVAFGFVF-IRGRNNL-E---LKRVE--------NE-D-GT-----------  669 (968)
T ss_pred             ccccc--cce--eeeehhHHHHHHHHHHHHHHHHHH-HHhhhcc-c---ccccc--------cc-c-cc-----------
Confidence            00101  111  112222222222222222222222 2222211 0   00000        00 0 00           


Q ss_pred             cCCCCccchhhhhhhccccccchhhhhhhhcccCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 005587          391 ASVKPKEDHRSEMRRMGAIPHAQNEQERNKQRMSTIPRRDDHEIDMSSLDMMMMPPPPPPPPPPPPPPPPPPPPPVVEKV  470 (689)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (689)
                                                         .      +  ...                                
T Consensus       670 -----------------------------------~------~--~~~--------------------------------  674 (968)
T PLN00113        670 -----------------------------------W------E--LQF--------------------------------  674 (968)
T ss_pred             -----------------------------------c------c--ccc--------------------------------
Confidence                                               0      0  000                                


Q ss_pred             ccccCCCCCCCccccCCCCCCCCCcccccchhhHhhhccCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChh
Q 005587          471 IVKPIVPAEGTAVKTSTKTAKPFTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQ  549 (689)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~  549 (689)
                           ...               .....++++++   ...|...++||+|+||.||+|+. .+|..||||++.....   
T Consensus       675 -----~~~---------------~~~~~~~~~~~---~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---  728 (968)
T PLN00113        675 -----FDS---------------KVSKSITINDI---LSSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNS---  728 (968)
T ss_pred             -----ccc---------------ccchhhhHHHH---HhhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCcc---
Confidence                 000               00011222222   23466778999999999999976 5789999999864321   


Q ss_pred             hHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHh
Q 005587          550 KDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE  629 (689)
Q Consensus       550 ~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~  629 (689)
                         ...+|++++++++|||||+++++|...+..|+|||||++|+|.++++.       ++|..+.+|+.|+++||+|||+
T Consensus       729 ---~~~~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~-------l~~~~~~~i~~~ia~~L~yLH~  798 (968)
T PLN00113        729 ---IPSSEIADMGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLRN-------LSWERRRKIAIGIAKALRFLHC  798 (968)
T ss_pred             ---ccHHHHHHHhhCCCCCcceEEEEEEcCCCCEEEEeCCCCCcHHHHHhc-------CCHHHHHHHHHHHHHHHHHhcc
Confidence               112457889999999999999999999999999999999999999962       7899999999999999999997


Q ss_pred             CCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCcceeecccceEEeccccc
Q 005587          630 ICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       630 ~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~apE~~~  686 (689)
                      .+.++|+||||||+||+++.++..++. ||.+.......   ...++..|+|||++.
T Consensus       799 ~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~~~~~~---~~~~t~~y~aPE~~~  851 (968)
T PLN00113        799 RCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLCTDT---KCFISSAYVAPETRE  851 (968)
T ss_pred             CCCCCeecCCCCHHhEEECCCCceEEE-eccccccccCC---CccccccccCccccc
Confidence            767799999999999999999988875 77766543222   125678899999874

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.8e-37  Score=327.78  Aligned_cols=187  Identities=46%  Similarity=0.782  Sum_probs=167.0

Q ss_pred             cccccchhhHhhhccCCCccceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecE
Q 005587          495 TARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKG  574 (689)
Q Consensus       495 ~~~~~~~~~l~~~~~~f~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~  574 (689)
                      ..+.|++.++..+|++|...++||+|+||.||+|.+.+|..||||++.......  .++|..|+.++.+++|||||+|+|
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~--~~eF~~Ei~~ls~l~H~Nlv~LlG  138 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQG--EREFLNEVEILSRLRHPNLVKLLG  138 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcc--hhHHHHHHHHHhcCCCcCcccEEE
Confidence            456799999999999999999999999999999999999999999886543321  566999999999999999999999


Q ss_pred             EEEeCC-eEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcE
Q 005587          575 YCAEHG-QRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAV  653 (689)
Q Consensus       575 ~~~~~~-~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~  653 (689)
                      ||.+.+ +.+||||||++|+|.++|+.....  .++|..|++|+.++|+||+|||+.+.++|||||||++|||||+++++
T Consensus       139 yC~e~~~~~~LVYEym~nGsL~d~L~~~~~~--~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~a  216 (361)
T KOG1187|consen  139 YCLEGGEHRLLVYEYMPNGSLEDHLHGKKGE--PLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNA  216 (361)
T ss_pred             EEecCCceEEEEEEccCCCCHHHHhCCCCCC--CCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCE
Confidence            999998 599999999999999999975432  78999999999999999999999988899999999999999999999


Q ss_pred             EEEeecCCccccC-CCcceee-cccceEEecccc
Q 005587          654 SVSDCGLAPLISS-GSVSQVS-HNLTIMRAGGVT  685 (689)
Q Consensus       654 kl~DFGla~~~~~-~~~~~~~-~~~~~~~apE~~  685 (689)
                      ||+|||+|+.... ....... .++..|+|||..
T Consensus       217 KlsDFGLa~~~~~~~~~~~~~~~gt~gY~~PEy~  250 (361)
T KOG1187|consen  217 KLSDFGLAKLGPEGDTSVSTTVMGTFGYLAPEYA  250 (361)
T ss_pred             EccCccCcccCCccccceeeecCCCCccCChhhh
Confidence            9999999987765 4333333 788899999987

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=3.5e-37  Score=314.07  Aligned_cols=174  Identities=26%  Similarity=0.456  Sum_probs=158.4

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      .+|...+.||+|+||+||+|+++ ++..||||.+.+........+-+..|+++|+.++|||||.++++++.++++|||||
T Consensus        10 ~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lVME   89 (429)
T KOG0595|consen   10 GDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLVME   89 (429)
T ss_pred             ccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEEEE
Confidence            56888888999999999999764 68999999998876556667788999999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCC------CcEEEEeecCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDD------LAVSVSDCGLA  661 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~------~~~kl~DFGla  661 (689)
                      ||.||||.++|+..    ..+++..+..++.|+|.||++||++   +||||||||+||||+..      -.+||+|||+|
T Consensus        90 yC~gGDLs~yi~~~----~~l~e~t~r~Fm~QLA~alq~L~~~---~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfA  162 (429)
T KOG0595|consen   90 YCNGGDLSDYIRRR----GRLPEATARHFMQQLASALQFLHEN---NIIHRDLKPQNILLSTTARNDTSPVLKIADFGFA  162 (429)
T ss_pred             eCCCCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCcceEEeccCCCCCCCceEEecccchh
Confidence            99999999999874    4789999999999999999999998   89999999999999764      45899999999


Q ss_pred             ccccCCCcceeecccceEEecccc-ccCC
Q 005587          662 PLISSGSVSQVSHNLTIMRAGGVT-HRNF  689 (689)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~apE~~-~~~~  689 (689)
                      +.+.++......+|++.||||||+ .++|
T Consensus       163 R~L~~~~~a~tlcGSplYMAPEV~~~~~Y  191 (429)
T KOG0595|consen  163 RFLQPGSMAETLCGSPLYMAPEVIMSQQY  191 (429)
T ss_pred             hhCCchhHHHHhhCCccccCHHHHHhccc
Confidence            999999999999999999999999 3444

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=9.1e-34  Score=288.59  Aligned_cols=172  Identities=26%  Similarity=0.397  Sum_probs=152.2

Q ss_pred             ccCCCccceEeecCCeEEEEE-EeCCCcEEEEEEeccccCChh-----hHHHHHHHHHHHhcCCCCCcceecEEEEeCCe
Q 005587          508 TNSFSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQ-----KDDEFLELVNNIDRIRHANIVELKGYCAEHGQ  581 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~-~~~~g~~vAvK~l~~~~~~~~-----~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~  581 (689)
                      .+.|.+.+.||+|+||.|-+| +.++|+.||||++.+......     ......+|+++|++|+|||||+++++|...++
T Consensus       171 ~d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~ds  250 (475)
T KOG0615|consen  171 NDYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPDS  250 (475)
T ss_pred             cceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCCc
Confidence            456778899999999999999 566899999999987643221     23345799999999999999999999999999


Q ss_pred             EEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCC---CcEEEEee
Q 005587          582 RLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDD---LAVSVSDC  658 (689)
Q Consensus       582 ~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~---~~~kl~DF  658 (689)
                      .|||||||+||+|++.+-..    ..+.+.....+++|++.|+.|||+.   ||+||||||+|||+..+   ..+||+||
T Consensus       251 ~YmVlE~v~GGeLfd~vv~n----k~l~ed~~K~~f~Qll~avkYLH~~---GI~HRDiKPeNILl~~~~e~~llKItDF  323 (475)
T KOG0615|consen  251 SYMVLEYVEGGELFDKVVAN----KYLREDLGKLLFKQLLTAVKYLHSQ---GIIHRDIKPENILLSNDAEDCLLKITDF  323 (475)
T ss_pred             eEEEEEEecCccHHHHHHhc----cccccchhHHHHHHHHHHHHHHHHc---CcccccCCcceEEeccCCcceEEEeccc
Confidence            99999999999999999874    4566777788999999999999998   89999999999999655   77999999


Q ss_pred             cCCccccCCCcceeecccceEEeccccc
Q 005587          659 GLAPLISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       659 Gla~~~~~~~~~~~~~~~~~~~apE~~~  686 (689)
                      |+|+...+++.-...+||+.|.||||+.
T Consensus       324 GlAK~~g~~sfm~TlCGTpsYvAPEVl~  351 (475)
T KOG0615|consen  324 GLAKVSGEGSFMKTLCGTPSYVAPEVLA  351 (475)
T ss_pred             chhhccccceehhhhcCCccccChhhee
Confidence            9999999999888899999999999984

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=4.1e-33  Score=282.22  Aligned_cols=171  Identities=25%  Similarity=0.327  Sum_probs=152.4

Q ss_pred             cCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCCh-hhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQ-QKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~-~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      ++|++.++||+|+||+||+++. .+++.+|+|++++..... .+.+....|..+|.+++||+||+++-.|++.+++|||+
T Consensus        25 ~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLylVl  104 (357)
T KOG0598|consen   25 DDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLYLVL  104 (357)
T ss_pred             hheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEEEEE
Confidence            5789999999999999999965 468999999998775433 34667889999999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccc-c
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI-S  665 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~-~  665 (689)
                      ||+.||+|+.+|..    ...+++..+.-|+.+|+.||.|||+.   +||||||||+|||||++|+++|+||||++.. .
T Consensus       105 d~~~GGeLf~hL~~----eg~F~E~~arfYlaEi~lAL~~LH~~---gIiyRDlKPENILLd~~GHi~LtDFgL~k~~~~  177 (357)
T KOG0598|consen  105 DYLNGGELFYHLQR----EGRFSEDRARFYLAEIVLALGYLHSK---GIIYRDLKPENILLDEQGHIKLTDFGLCKEDLK  177 (357)
T ss_pred             eccCCccHHHHHHh----cCCcchhHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHeeecCCCcEEEeccccchhccc
Confidence            99999999999986    34688999999999999999999998   8999999999999999999999999999954 4


Q ss_pred             CCCcceeecccceEEeccccc
Q 005587          666 SGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       666 ~~~~~~~~~~~~~~~apE~~~  686 (689)
                      .+.....-+||+.|||||++.
T Consensus       178 ~~~~t~tfcGT~eYmAPEil~  198 (357)
T KOG0598|consen  178 DGDATRTFCGTPEYMAPEILL  198 (357)
T ss_pred             CCCccccccCCccccChHHHh
Confidence            445555569999999999985

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.4e-34  Score=280.73  Aligned_cols=179  Identities=25%  Similarity=0.367  Sum_probs=157.5

Q ss_pred             cCCCccceEeecCCeEEEEE-EeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecE-EEEeCCe-EEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKG-YCAEHGQ-RLLI  585 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~-~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~-~~~~~~~-~~lV  585 (689)
                      .+|++.++||+|.||.||++ ...+|..||.|.+.-...+......+..|+.+|++|+|||||++++ .+.++.+ ++||
T Consensus        19 ~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlniv   98 (375)
T KOG0591|consen   19 ADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNIV   98 (375)
T ss_pred             HHHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHHH
Confidence            35788899999999999999 5679999999999877777777888999999999999999999998 4444445 8999


Q ss_pred             EeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCC-CcEEecccCCCeEecCCCcEEEEeecCCccc
Q 005587          586 YEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQP-PIVHRNFKSANILLDDDLAVSVSDCGLAPLI  664 (689)
Q Consensus       586 ~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~-~iiHrDlKp~NILl~~~~~~kl~DFGla~~~  664 (689)
                      ||||.+|||.++++..+...+.+++..++++..|++.||..+|..... -|+||||||.||+|+++|.+||+||||++++
T Consensus        99 mE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~l  178 (375)
T KOG0591|consen   99 MELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDFGLGRFL  178 (375)
T ss_pred             HHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCceeeccchhHhHh
Confidence            999999999999998777788899999999999999999999984321 3899999999999999999999999999999


Q ss_pred             cCCC-cceeecccceEEecccccc
Q 005587          665 SSGS-VSQVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       665 ~~~~-~~~~~~~~~~~~apE~~~~  687 (689)
                      .... ......||+|||+||+++.
T Consensus       179 ~s~~tfA~S~VGTPyYMSPE~i~~  202 (375)
T KOG0591|consen  179 SSKTTFAHSLVGTPYYMSPERIHE  202 (375)
T ss_pred             cchhHHHHhhcCCCcccCHHHHhc
Confidence            7654 4455678999999999973

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=2.1e-33  Score=275.25  Aligned_cols=171  Identities=21%  Similarity=0.351  Sum_probs=150.2

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      +.|+...++|+|+||+||+|+.+ +|+.||||++.....++...+-.++|+++|++++|+|+|.++++|......+||+|
T Consensus         2 ekYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE   81 (396)
T KOG0593|consen    2 EKYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFE   81 (396)
T ss_pred             cHHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEee
Confidence            35777789999999999999765 69999999998776656666778899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcccc-C
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS-S  666 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~-~  666 (689)
                      ||+.--|. -|.   .....++...+.+|..|+++|+.|+|+.   +||||||||+|||+..+|.+||||||+|+.+. +
T Consensus        82 ~~dhTvL~-eLe---~~p~G~~~~~vk~~l~Q~l~ai~~cHk~---n~IHRDIKPENILit~~gvvKLCDFGFAR~L~~p  154 (396)
T KOG0593|consen   82 YCDHTVLH-ELE---RYPNGVPSELVKKYLYQLLKAIHFCHKN---NCIHRDIKPENILITQNGVVKLCDFGFARTLSAP  154 (396)
T ss_pred             ecchHHHH-HHH---hccCCCCHHHHHHHHHHHHHHhhhhhhc---CeecccCChhheEEecCCcEEeccchhhHhhcCC
Confidence            99874333 333   2356788999999999999999999998   89999999999999999999999999999998 6


Q ss_pred             CCcceeecccceEEeccccc
Q 005587          667 GSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 ~~~~~~~~~~~~~~apE~~~  686 (689)
                      ++...+...|.+|||||.+-
T Consensus       155 gd~YTDYVATRWYRaPELLv  174 (396)
T KOG0593|consen  155 GDNYTDYVATRWYRAPELLV  174 (396)
T ss_pred             cchhhhhhhhhhccChhhhc
Confidence            77777788899999999984

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.98  E-value=2.8e-32  Score=289.28  Aligned_cols=172  Identities=29%  Similarity=0.464  Sum_probs=149.3

Q ss_pred             CccceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCC-eEEEEEeccC
Q 005587          512 SQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHG-QRLLIYEYCS  590 (689)
Q Consensus       512 ~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~-~~~lV~Ey~~  590 (689)
                      ...+.||+|+||+||+|.+.....||||++..........++|.+|+.+|.+++|||||+++|+|.+.. ...+|||||+
T Consensus        44 ~~~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy~~  123 (362)
T KOG0192|consen   44 PIEEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTEYMP  123 (362)
T ss_pred             hhhhhcccCCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEeCC
Confidence            344569999999999999965555999999876544444779999999999999999999999999987 7999999999


Q ss_pred             CCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCC-cEEecccCCCeEecCCC-cEEEEeecCCccccCC-
Q 005587          591 NGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPP-IVHRNFKSANILLDDDL-AVSVSDCGLAPLISSG-  667 (689)
Q Consensus       591 ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~-iiHrDlKp~NILl~~~~-~~kl~DFGla~~~~~~-  667 (689)
                      +|+|.++++..  ....+++..+++|+.|||+||.|||+.   + ||||||||+|||++.++ .+||+|||+++..... 
T Consensus       124 ~GsL~~~l~~~--~~~~l~~~~~l~~aldiArGm~YLH~~---~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~  198 (362)
T KOG0192|consen  124 GGSLSVLLHKK--RKRKLPLKVRLRIALDIARGMEYLHSE---GPIIHRDLKSDNILVDLKGKTLKIADFGLSREKVISK  198 (362)
T ss_pred             CCcHHHHHhhc--ccCCCCHHHHHHHHHHHHHHHHHHhcC---CCeeecccChhhEEEcCCCCEEEECCCccceeecccc
Confidence            99999999874  256799999999999999999999998   5 99999999999999997 9999999999987754 


Q ss_pred             CcceeecccceEEeccccccC
Q 005587          668 SVSQVSHNLTIMRAGGVTHRN  688 (689)
Q Consensus       668 ~~~~~~~~~~~~~apE~~~~~  688 (689)
                      .......+|..|||||++..+
T Consensus       199 ~~~~~~~GT~~wMAPEv~~~~  219 (362)
T KOG0192|consen  199 TSMTSVAGTYRWMAPEVLRGE  219 (362)
T ss_pred             ccccCCCCCccccChhhhcCC
Confidence            222336788899999999743

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.98  E-value=2.3e-32  Score=284.91  Aligned_cols=171  Identities=25%  Similarity=0.397  Sum_probs=149.8

Q ss_pred             cCCCccceEeecCCeEEEEEE-eCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeC--CeEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEH--GQRLLI  585 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~--~~~~lV  585 (689)
                      +.|+..++||+|+||.||+|+ ..+|+.||+|+++.............+||.+|++|+|||||+|.+...+.  +.+|||
T Consensus       117 ~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYlV  196 (560)
T KOG0600|consen  117 DSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYLV  196 (560)
T ss_pred             HHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEEE
Confidence            467778899999999999995 56899999999988766566667788999999999999999999998876  789999


Q ss_pred             EeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcccc
Q 005587          586 YEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS  665 (689)
Q Consensus       586 ~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~  665 (689)
                      +|||++ ||.-++...   .-.+++.++..|+.|++.||+|||+.   +|+|||||.+|||||++|.+||+|||||+++.
T Consensus       197 FeYMdh-DL~GLl~~p---~vkft~~qIKc~mkQLl~Gl~~cH~~---gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y~  269 (560)
T KOG0600|consen  197 FEYMDH-DLSGLLSSP---GVKFTEPQIKCYMKQLLEGLEYCHSR---GVLHRDIKGSNILIDNNGVLKIADFGLARFYT  269 (560)
T ss_pred             Eecccc-hhhhhhcCC---CcccChHHHHHHHHHHHHHHHHHhhc---CeeeccccccceEEcCCCCEEeccccceeecc
Confidence            999987 898888753   34689999999999999999999998   89999999999999999999999999999987


Q ss_pred             CCCcc--eeecccceEEeccccc
Q 005587          666 SGSVS--QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       666 ~~~~~--~~~~~~~~~~apE~~~  686 (689)
                      .....  ..-.-|.+|++||++.
T Consensus       270 ~~~~~~~T~rVvTLWYRpPELLL  292 (560)
T KOG0600|consen  270 PSGSAPYTSRVVTLWYRPPELLL  292 (560)
T ss_pred             CCCCcccccceEEeeccChHHhc
Confidence            76533  2234568899999985

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=99.97  E-value=7e-32  Score=273.33  Aligned_cols=166  Identities=22%  Similarity=0.357  Sum_probs=147.8

Q ss_pred             ccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCC-eEEEEEeccC
Q 005587          513 QENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHG-QRLLIYEYCS  590 (689)
Q Consensus       513 ~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~-~~~lV~Ey~~  590 (689)
                      ....||+|..|+||+++++ +++.+|+|.+... .+....+++.+|+++++..+||+||++||.|...+ .+.|+||||.
T Consensus        83 ~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~-~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~mEYMD  161 (364)
T KOG0581|consen   83 RLGVLGSGNGGTVYKVRHKPTGKIYALKVILLN-IDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISICMEYMD  161 (364)
T ss_pred             hhhhcccCCCcEEEEEEEcCCCeEEEEEeeccc-CCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEeehhhcC
Confidence            3578999999999999765 6899999999443 34566789999999999999999999999999998 5999999999


Q ss_pred             CCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCcc
Q 005587          591 NGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVS  670 (689)
Q Consensus       591 ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~  670 (689)
                      +|||.+++...    ..+++...-+|+.+|++||.|||+.  .+||||||||+|||++..|++||||||.++.+... ..
T Consensus       162 gGSLd~~~k~~----g~i~E~~L~~ia~~VL~GL~YLh~~--~~IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS-~a  234 (364)
T KOG0581|consen  162 GGSLDDILKRV----GRIPEPVLGKIARAVLRGLSYLHEE--RKIIHRDIKPSNLLVNSKGEVKICDFGVSGILVNS-IA  234 (364)
T ss_pred             CCCHHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHhhc--cCeeeccCCHHHeeeccCCCEEeccccccHHhhhh-hc
Confidence            99999999863    5689999999999999999999974  28999999999999999999999999999998766 55


Q ss_pred             eeecccceEEeccccc
Q 005587          671 QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       671 ~~~~~~~~~~apE~~~  686 (689)
                      ....||..|||||=+.
T Consensus       235 ~tfvGT~~YMsPERi~  250 (364)
T KOG0581|consen  235 NTFVGTSAYMSPERIS  250 (364)
T ss_pred             ccccccccccChhhhc
Confidence            5578899999999874

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=1.2e-31  Score=286.39  Aligned_cols=171  Identities=22%  Similarity=0.431  Sum_probs=156.3

Q ss_pred             cCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCC-hhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASS-QQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~-~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      ..|...++||+|+|+.||.++. .+|+.||+|++.+.... ....+...+|+++.+.|+|||||+++++|++.+++|||.
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivL   97 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVL   97 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEE
Confidence            4688899999999999999976 78999999999875432 334567889999999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      |+|++|+|..+++.    .+.+++.+++.+++||+.||.|||+.   +|||||||..|++|+++.++||+|||||..+..
T Consensus        98 ELC~~~sL~el~Kr----rk~ltEpEary~l~QIv~GlkYLH~~---~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~  170 (592)
T KOG0575|consen   98 ELCHRGSLMELLKR----RKPLTEPEARYFLRQIVEGLKYLHSL---GIIHRDLKLGNLFLNENMNVKIGDFGLATQLEY  170 (592)
T ss_pred             EecCCccHHHHHHh----cCCCCcHHHHHHHHHHHHHHHHHHhc---CceecccchhheeecCcCcEEecccceeeeecC
Confidence            99999999999985    56899999999999999999999998   899999999999999999999999999999884


Q ss_pred             -CCcceeecccceEEeccccc
Q 005587          667 -GSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 -~~~~~~~~~~~~~~apE~~~  686 (689)
                       ++.....+||+-|.||||+.
T Consensus       171 ~~Erk~TlCGTPNYIAPEVl~  191 (592)
T KOG0575|consen  171 DGERKKTLCGTPNYIAPEVLN  191 (592)
T ss_pred             cccccceecCCCcccChhHhc
Confidence             47888899999999999984

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.97  E-value=8.8e-32  Score=259.91  Aligned_cols=170  Identities=24%  Similarity=0.360  Sum_probs=150.5

Q ss_pred             cCCCccceEeecCCeEEEEEE-eCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      ++|...++||+|.||.||+|+ .++|+.||||+++.....+.-....++|++.|+.++|+||+.++++|...+...||+|
T Consensus         2 ~rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfE   81 (318)
T KOG0659|consen    2 DRYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVFE   81 (318)
T ss_pred             chhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEEE
Confidence            357778899999999999995 5689999999998776555556788999999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      ||+. +|+.+++..   ...+....+..|+.++++||+|||..   .|+||||||.|+|++++|.+||+|||+|+.+...
T Consensus        82 fm~t-dLe~vIkd~---~i~l~pa~iK~y~~m~LkGl~y~H~~---~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p  154 (318)
T KOG0659|consen   82 FMPT-DLEVVIKDK---NIILSPADIKSYMLMTLKGLAYCHSK---WILHRDLKPNNLLISSDGQLKIADFGLARFFGSP  154 (318)
T ss_pred             eccc-cHHHHhccc---ccccCHHHHHHHHHHHHHHHHHHHhh---hhhcccCCccceEEcCCCcEEeecccchhccCCC
Confidence            9975 999999864   35688899999999999999999998   7999999999999999999999999999998765


Q ss_pred             Ccc-eeecccceEEecccc
Q 005587          668 SVS-QVSHNLTIMRAGGVT  685 (689)
Q Consensus       668 ~~~-~~~~~~~~~~apE~~  685 (689)
                      ... ....-|.+|+|||++
T Consensus       155 ~~~~~~~V~TRWYRAPELL  173 (318)
T KOG0659|consen  155 NRIQTHQVVTRWYRAPELL  173 (318)
T ss_pred             CcccccceeeeeccChHHh
Confidence            533 334678999999987

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=8.9e-32  Score=278.53  Aligned_cols=172  Identities=24%  Similarity=0.362  Sum_probs=153.7

Q ss_pred             ccCCCccceEeecCCeEEEEEE-eCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCC-CCCcceecEEEEeCC-eEEE
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR-HANIVELKGYCAEHG-QRLL  584 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~-HpnIv~l~~~~~~~~-~~~l  584 (689)
                      .++|...+.||.|+||.||+|+ ..+|+.||||++++..... .+..=+||++.|++|. |||||++.+.+.+++ .+|+
T Consensus         9 m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~-ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~f   87 (538)
T KOG0661|consen    9 MDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSW-EECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILYF   87 (538)
T ss_pred             HHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccH-HHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEee
Confidence            4678889999999999999995 5679999999998776543 3344468999999998 999999999999988 9999


Q ss_pred             EEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccc
Q 005587          585 IYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI  664 (689)
Q Consensus       585 V~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~  664 (689)
                      |||||+. +|+++++++   .+.+++..++.|+.||++||+|+|..   |+.|||+||+|||+.....+||+||||||.+
T Consensus        88 VfE~Md~-NLYqLmK~R---~r~fse~~irnim~QilqGL~hiHk~---GfFHRDlKPENiLi~~~~~iKiaDFGLARev  160 (538)
T KOG0661|consen   88 VFEFMDC-NLYQLMKDR---NRLFSESDIRNIMYQILQGLAHIHKH---GFFHRDLKPENILISGNDVIKIADFGLAREV  160 (538)
T ss_pred             eHHhhhh-hHHHHHhhc---CCcCCHHHHHHHHHHHHHHHHHHHhc---CcccccCChhheEecccceeEeccccccccc
Confidence            9999965 999999875   56899999999999999999999998   8999999999999998889999999999999


Q ss_pred             cCCCcceeecccceEEecccccc
Q 005587          665 SSGSVSQVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       665 ~~~~~~~~~~~~~~~~apE~~~~  687 (689)
                      ........-.-|.+|||||++.+
T Consensus       161 ~SkpPYTeYVSTRWYRAPEvLLr  183 (538)
T KOG0661|consen  161 RSKPPYTEYVSTRWYRAPEVLLR  183 (538)
T ss_pred             ccCCCcchhhhcccccchHHhhh
Confidence            88887777788999999999953

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=2e-31  Score=269.46  Aligned_cols=171  Identities=22%  Similarity=0.355  Sum_probs=158.2

Q ss_pred             cCCCccceEeecCCeEEEEEE-eCCCcEEEEEEeccccC-ChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~-~~~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      .+|++.+.||+|.||.|-+|. ...|+.||||.+++... +.++...+.+|+++|+.|+||||+.+|++|+..+.+.|||
T Consensus        53 HRyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIvivM  132 (668)
T KOG0611|consen   53 HRYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIVM  132 (668)
T ss_pred             hHHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEEE
Confidence            467888999999999999994 57899999999987653 3456778899999999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      ||..+|.|+|++.+    ...+++.++.++++||..|+.|+|..   +++|||||.+|||+|.++++||+||||+-++..
T Consensus       133 EYaS~GeLYDYiSe----r~~LsErEaRhfFRQIvSAVhYCHkn---rVvHRDLKLENILLD~N~NiKIADFGLSNly~~  205 (668)
T KOG0611|consen  133 EYASGGELYDYISE----RGSLSEREARHFFRQIVSAVHYCHKN---RVVHRDLKLENILLDQNNNIKIADFGLSNLYAD  205 (668)
T ss_pred             EecCCccHHHHHHH----hccccHHHHHHHHHHHHHHHHHHhhc---cceecccchhheeecCCCCeeeeccchhhhhcc
Confidence            99999999999987    45789999999999999999999987   899999999999999999999999999999999


Q ss_pred             CCcceeecccceEEeccccc
Q 005587          667 GSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 ~~~~~~~~~~~~~~apE~~~  686 (689)
                      +..-+.-++.+.|.+|||+.
T Consensus       206 ~kfLqTFCGSPLYASPEIvN  225 (668)
T KOG0611|consen  206 KKFLQTFCGSPLYASPEIVN  225 (668)
T ss_pred             ccHHHHhcCCcccCCccccC
Confidence            99999999999999999985

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=99.97  E-value=1.3e-30  Score=255.41  Aligned_cols=169  Identities=24%  Similarity=0.348  Sum_probs=151.1

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCCh-hhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQ-QKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~-~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      ++|+....||.|+||.|.+++.+ +|..+|+|++.+...-+ ...+....|.++|+.+.||+++++++.|.+.+..||||
T Consensus        44 ~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~lymvm  123 (355)
T KOG0616|consen   44 QDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLYMVM  123 (355)
T ss_pred             hhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEEEEE
Confidence            46778899999999999999754 68999999998764322 33456778999999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      ||++||.|+.+++..    .++++..++-++.||+.||+|||+.   +|++|||||+|||+|.+|.+||+|||+|+.+..
T Consensus       124 eyv~GGElFS~Lrk~----~rF~e~~arFYAAeivlAleylH~~---~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~  196 (355)
T KOG0616|consen  124 EYVPGGELFSYLRKS----GRFSEPHARFYAAEIVLALEYLHSL---DIIYRDLKPENLLLDQNGHIKITDFGFAKRVSG  196 (355)
T ss_pred             eccCCccHHHHHHhc----CCCCchhHHHHHHHHHHHHHHHHhc---CeeeccCChHHeeeccCCcEEEEeccceEEecC
Confidence            999999999999873    4688999999999999999999998   899999999999999999999999999999876


Q ss_pred             CCcceeecccceEEeccccc
Q 005587          667 GSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 ~~~~~~~~~~~~~~apE~~~  686 (689)
                      .  ....+||+-|+|||++.
T Consensus       197 r--T~TlCGTPeYLAPEii~  214 (355)
T KOG0616|consen  197 R--TWTLCGTPEYLAPEIIQ  214 (355)
T ss_pred             c--EEEecCCccccChHHhh
Confidence            5  56689999999999984

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.96  E-value=1.6e-30  Score=272.97  Aligned_cols=170  Identities=25%  Similarity=0.385  Sum_probs=154.3

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      ++|.+.+.||+|+||.||||+.+ +.+.||+|.+.+....+.+.+.+.+|++++++++|||||.++++|+...+.|+|+|
T Consensus         2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVte   81 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVTE   81 (808)
T ss_pred             cchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEeh
Confidence            46788899999999999999654 68999999998877666777889999999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+.| +|+.+|..    ...++++.+..|+.++..||.|||+.   +|+|||+||.|||++..|.+|+||||+|+-+..+
T Consensus        82 ~a~g-~L~~il~~----d~~lpEe~v~~~a~~LVsaL~yLhs~---rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~  153 (808)
T KOG0597|consen   82 YAVG-DLFTILEQ----DGKLPEEQVRAIAYDLVSALYYLHSN---RILHRDMKPQNILLEKGGTLKLCDFGLARAMSTN  153 (808)
T ss_pred             hhhh-hHHHHHHh----ccCCCHHHHHHHHHHHHHHHHHHHhc---CcccccCCcceeeecCCCceeechhhhhhhcccC
Confidence            9987 99999986    45799999999999999999999998   8999999999999999999999999999998775


Q ss_pred             C-cceeecccceEEeccccc
Q 005587          668 S-VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~-~~~~~~~~~~~~apE~~~  686 (689)
                      . ......|++.|||||+..
T Consensus       154 t~vltsikGtPlYmAPElv~  173 (808)
T KOG0597|consen  154 TSVLTSIKGTPLYMAPELVE  173 (808)
T ss_pred             ceeeeeccCcccccCHHHHc
Confidence            4 444567889999999974

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=7e-30  Score=273.38  Aligned_cols=174  Identities=27%  Similarity=0.393  Sum_probs=154.2

Q ss_pred             hccCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCC---hhhHHHHHHHHHHHhcCC-CCCcceecEEEEeCCe
Q 005587          507 YTNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASS---QQKDDEFLELVNNIDRIR-HANIVELKGYCAEHGQ  581 (689)
Q Consensus       507 ~~~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~---~~~~~~~~~e~~~l~~l~-HpnIv~l~~~~~~~~~  581 (689)
                      ....|.+.+.||+|+||.||.|.. .+|+.||+|++.+....   ......+.+|+.+++.++ ||||+++++++....+
T Consensus        15 ~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~~   94 (370)
T KOG0583|consen   15 SIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPTK   94 (370)
T ss_pred             ccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCCe
Confidence            346788999999999999999954 57899999987664221   123456668999999999 9999999999999999


Q ss_pred             EEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCC-CcEEEEeecC
Q 005587          582 RLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDD-LAVSVSDCGL  660 (689)
Q Consensus       582 ~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~-~~~kl~DFGl  660 (689)
                      +|+||||+.||+|++++..    ...+.+..+.+++.|++.|++|||+.   +|+||||||+|||+|.+ +++||+|||+
T Consensus        95 ~~ivmEy~~gGdL~~~i~~----~g~l~E~~ar~~F~Qlisav~y~H~~---gi~HRDLK~ENilld~~~~~~Kl~DFG~  167 (370)
T KOG0583|consen   95 IYIVMEYCSGGDLFDYIVN----KGRLKEDEARKYFRQLISAVAYCHSR---GIVHRDLKPENILLDGNEGNLKLSDFGL  167 (370)
T ss_pred             EEEEEEecCCccHHHHHHH----cCCCChHHHHHHHHHHHHHHHHHHhC---CEeeCCCCHHHEEecCCCCCEEEecccc
Confidence            9999999999999999987    34678899999999999999999998   89999999999999999 9999999999


Q ss_pred             Cccc-cCCCcceeecccceEEecccccc
Q 005587          661 APLI-SSGSVSQVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       661 a~~~-~~~~~~~~~~~~~~~~apE~~~~  687 (689)
                      +... ..+......+|++.|+|||++..
T Consensus       168 s~~~~~~~~~l~t~cGsp~Y~aPEvl~~  195 (370)
T KOG0583|consen  168 SAISPGEDGLLKTFCGSPAYAAPEVLSG  195 (370)
T ss_pred             ccccCCCCCcccCCCCCcccCCHHHhCC
Confidence            9999 57788888999999999999953

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.96  E-value=3.2e-30  Score=256.13  Aligned_cols=171  Identities=26%  Similarity=0.320  Sum_probs=147.1

Q ss_pred             cCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEe--CCeEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAE--HGQRLLI  585 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~--~~~~~lV  585 (689)
                      ++|+..+.|++|+||.||+|+. ++++.||+|+++.......-.-.-++|+.+|.+++|||||.+..+...  -+.+|||
T Consensus        76 ~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~iy~V  155 (419)
T KOG0663|consen   76 EEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKIYIV  155 (419)
T ss_pred             HHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccccceeeee
Confidence            4678889999999999999965 478999999998665433445567899999999999999999888765  4679999


Q ss_pred             EeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcccc
Q 005587          586 YEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS  665 (689)
Q Consensus       586 ~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~  665 (689)
                      ||||++ ||..+++..   .+++...++..++.|+++|++|||..   .|+|||||++|+|+.+.|.+||+|||||+.+.
T Consensus       156 Me~~Eh-DLksl~d~m---~q~F~~~evK~L~~QlL~glk~lH~~---wilHRDLK~SNLLm~~~G~lKiaDFGLAR~yg  228 (419)
T KOG0663|consen  156 MEYVEH-DLKSLMETM---KQPFLPGEVKTLMLQLLRGLKHLHDN---WILHRDLKTSNLLLSHKGILKIADFGLAREYG  228 (419)
T ss_pred             HHHHHh-hHHHHHHhc---cCCCchHHHHHHHHHHHHHHHHHhhc---eeEecccchhheeeccCCcEEecccchhhhhc
Confidence            999987 999999864   36788999999999999999999998   69999999999999999999999999999998


Q ss_pred             CCCcc-eeecccceEEeccccc
Q 005587          666 SGSVS-QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       666 ~~~~~-~~~~~~~~~~apE~~~  686 (689)
                      +.-.. .....|.+|+|||++.
T Consensus       229 sp~k~~T~lVVTLWYRaPELLL  250 (419)
T KOG0663|consen  229 SPLKPYTPLVVTLWYRAPELLL  250 (419)
T ss_pred             CCcccCcceEEEeeecCHHHhc
Confidence            76432 3356678899999984

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=99.96  E-value=4.5e-30  Score=269.82  Aligned_cols=175  Identities=27%  Similarity=0.345  Sum_probs=151.2

Q ss_pred             ccCCCccceEeecCCeEEEEEE-eCCCcEEEEEEeccccCChh-hHHHHHHHHHHHhcC-CCCCcceecEEEEeCCeEEE
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQ-KDDEFLELVNNIDRI-RHANIVELKGYCAEHGQRLL  584 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~-~~~g~~vAvK~l~~~~~~~~-~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~~~~~~l  584 (689)
                      .++|..++.||+|+|++||+|+ ..+++.||||++.+...-.+ ..+-..+|-..|.+| .||.||+|+..|.+...+|+
T Consensus        72 ~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~sLYF  151 (604)
T KOG0592|consen   72 PNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEESLYF  151 (604)
T ss_pred             hhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccceEE
Confidence            3678899999999999999995 56799999999987654333 234456788888888 89999999999999999999


Q ss_pred             EEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccc
Q 005587          585 IYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI  664 (689)
Q Consensus       585 V~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~  664 (689)
                      |+||++||+|.++|+..    ..+++..++.++.+|+.||+|||+.   |||||||||+|||||++|++||+|||-|+.+
T Consensus       152 vLe~A~nGdll~~i~K~----Gsfde~caR~YAAeIldAleylH~~---GIIHRDlKPENILLd~dmhikITDFGsAK~l  224 (604)
T KOG0592|consen  152 VLEYAPNGDLLDLIKKY----GSFDETCARFYAAEILDALEYLHSN---GIIHRDLKPENILLDKDGHIKITDFGSAKIL  224 (604)
T ss_pred             EEEecCCCcHHHHHHHh----CcchHHHHHHHHHHHHHHHHHHHhc---CceeccCChhheeEcCCCcEEEeeccccccC
Confidence            99999999999999974    4688999999999999999999998   8999999999999999999999999999998


Q ss_pred             cCCCcc--------------eeecccceEEeccccccCC
Q 005587          665 SSGSVS--------------QVSHNLTIMRAGGVTHRNF  689 (689)
Q Consensus       665 ~~~~~~--------------~~~~~~~~~~apE~~~~~~  689 (689)
                      .+....              ..-.||..|.+||++.+++
T Consensus       225 ~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~  263 (604)
T KOG0592|consen  225 SPSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSP  263 (604)
T ss_pred             ChhhccccCccCcccccCcccceeeeecccCHHHhcCCC
Confidence            654333              2245778899999997653

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.96  E-value=6.8e-29  Score=255.82  Aligned_cols=169  Identities=30%  Similarity=0.423  Sum_probs=145.7

Q ss_pred             CCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCC--eEEEEE
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHG--QRLLIY  586 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~--~~~lV~  586 (689)
                      +|...+.||+|+||.||++... +|...|||.+.......  .+.+.+|+++|.+++|||||+++|......  .+++.|
T Consensus        18 ~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~--~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~m   95 (313)
T KOG0198|consen   18 NWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPT--SESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFM   95 (313)
T ss_pred             hhhhhccccCccceEEEEEEecCCCcceeeeeeecccchh--HHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeee
Confidence            4666789999999999999664 59999999987653222  567899999999999999999999866554  689999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecC-CCcEEEEeecCCcccc
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDD-DLAVSVSDCGLAPLIS  665 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~-~~~~kl~DFGla~~~~  665 (689)
                      ||+++|+|.+++...+.   .+++..++++++||++||+|||++   +||||||||+|||++. ++.+||+|||+++...
T Consensus        96 Ey~~~GsL~~~~~~~g~---~l~E~~v~~ytr~iL~GL~ylHs~---g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~  169 (313)
T KOG0198|consen   96 EYAPGGSLSDLIKRYGG---KLPEPLVRRYTRQILEGLAYLHSK---GIVHCDIKPANILLDPSNGDVKLADFGLAKKLE  169 (313)
T ss_pred             eccCCCcHHHHHHHcCC---CCCHHHHHHHHHHHHHHHHHHHhC---CEeccCcccceEEEeCCCCeEEeccCccccccc
Confidence            99999999999987542   699999999999999999999987   8999999999999999 7999999999999877


Q ss_pred             C----CCcceeecccceEEeccccc
Q 005587          666 S----GSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       666 ~----~~~~~~~~~~~~~~apE~~~  686 (689)
                      .    ........++++|||||++.
T Consensus       170 ~~~~~~~~~~~~~Gtp~~maPEvi~  194 (313)
T KOG0198|consen  170 SKGTKSDSELSVQGTPNYMAPEVIR  194 (313)
T ss_pred             cccccccccccccCCccccCchhhc
Confidence            3    22333467889999999986

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.96  E-value=4.9e-29  Score=265.01  Aligned_cols=175  Identities=29%  Similarity=0.460  Sum_probs=152.2

Q ss_pred             hHhhhccCCCccceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeE
Q 005587          503 SLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQR  582 (689)
Q Consensus       503 ~l~~~~~~f~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~  582 (689)
                      +.....+.+.+.+.||+|.||+||+|+|..  .||||.+......+...+.|..|+.++++-||.||+-+.|||..+.. 
T Consensus       386 ~WeIp~~ev~l~~rIGsGsFGtV~Rg~whG--dVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p~~-  462 (678)
T KOG0193|consen  386 EWEIPPEEVLLGERIGSGSFGTVYRGRWHG--DVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMNPPL-  462 (678)
T ss_pred             ccccCHHHhhccceeccccccceeeccccc--ceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcCCce-
Confidence            333344556778999999999999999853  59999999888777888999999999999999999999999999887 


Q ss_pred             EEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCc
Q 005587          583 LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAP  662 (689)
Q Consensus       583 ~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~  662 (689)
                      .||+.+|+|.+|+.+||..+   ..++..+.+.|++|||+||.|||.+   +|||||||..||++++++.|||+||||+.
T Consensus       463 AIiTqwCeGsSLY~hlHv~e---tkfdm~~~idIAqQiaqGM~YLHAK---~IIHrDLKSnNIFl~~~~kVkIgDFGLat  536 (678)
T KOG0193|consen  463 AIITQWCEGSSLYTHLHVQE---TKFDMNTTIDIAQQIAQGMDYLHAK---NIIHRDLKSNNIFLHEDLKVKIGDFGLAT  536 (678)
T ss_pred             eeeehhccCchhhhhccchh---hhhhHHHHHHHHHHHHHhhhhhhhh---hhhhhhccccceEEccCCcEEEeccccee
Confidence            99999999999999999753   5688999999999999999999997   89999999999999999999999999986


Q ss_pred             ccc---CCCcceeecccceEEeccccc
Q 005587          663 LIS---SGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       663 ~~~---~~~~~~~~~~~~~~~apE~~~  686 (689)
                      .-.   -.......++..-|||||+++
T Consensus       537 vk~~w~g~~q~~qp~gsilwmAPEvIR  563 (678)
T KOG0193|consen  537 VKTRWSGEQQLEQPHGSLLWMAPEVIR  563 (678)
T ss_pred             eeeeeccccccCCCccchhhhcHHHHh
Confidence            432   223334466777899999996

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=2.2e-29  Score=269.73  Aligned_cols=171  Identities=25%  Similarity=0.345  Sum_probs=157.0

Q ss_pred             cCCCccceEeecCCeEEEEEE-eCCCcEEEEEEeccc-cCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKR-ASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~-~~~g~~vAvK~l~~~-~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      .-|++++-||+|+.|.|..|+ ..+|+.+|||++.+. .........+.+|+.+|+-+.||||+++|++|++..++|+|.
T Consensus        12 GpwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylvl   91 (786)
T KOG0588|consen   12 GPWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLVL   91 (786)
T ss_pred             cceeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEEE
Confidence            347788999999999999995 468999999999876 334445567889999999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      ||++||.|++++..    +..+++.++.++++||+.|+.|+|..   +|+||||||+|+|||..+.+||+|||+|.+-.+
T Consensus        92 Eyv~gGELFdylv~----kG~l~e~eaa~ff~QIi~gv~yCH~~---~icHRDLKpENlLLd~~~nIKIADFGMAsLe~~  164 (786)
T KOG0588|consen   92 EYVPGGELFDYLVR----KGPLPEREAAHFFRQILDGVSYCHAF---NICHRDLKPENLLLDVKNNIKIADFGMASLEVP  164 (786)
T ss_pred             EecCCchhHHHHHh----hCCCCCHHHHHHHHHHHHHHHHHhhh---cceeccCCchhhhhhcccCEeeeccceeecccC
Confidence            99999999999986    45788999999999999999999998   899999999999999999999999999999999


Q ss_pred             CCcceeecccceEEeccccc
Q 005587          667 GSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 ~~~~~~~~~~~~~~apE~~~  686 (689)
                      +..-+..+|.++|.+|||+.
T Consensus       165 gklLeTSCGSPHYA~PEIV~  184 (786)
T KOG0588|consen  165 GKLLETSCGSPHYAAPEIVS  184 (786)
T ss_pred             CccccccCCCcccCCchhhc
Confidence            99999999999999999995

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=1.5e-28  Score=252.81  Aligned_cols=171  Identities=22%  Similarity=0.357  Sum_probs=150.6

Q ss_pred             cCCCccceEeecCCeEEEEEE-eCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      +.|++.++||.|..++||+|+ ...++.||||++..+.... ..+.+.+|+..|+.++||||++++..|..+..+|+||.
T Consensus        26 ~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~-~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~LWvVmp  104 (516)
T KOG0582|consen   26 KDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNN-DLDALRKEVQTMSLIDHPNIVTYHCSFVVDSELWVVMP  104 (516)
T ss_pred             cceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhh-hHHHHHHHHHHhhhcCCCCcceEEEEEEecceeEEeeh
Confidence            578899999999999999995 5678999999998776543 36889999999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      ||.+||+.++++..-  ...+++..+..|.+++++||.|||.+   |.||||||+.|||||.+|.+||+|||.+..+.+.
T Consensus       105 fMa~GS~ldIik~~~--~~Gl~E~~Ia~iLre~LkaL~YLH~~---G~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~~  179 (516)
T KOG0582|consen  105 FMAGGSLLDIIKTYY--PDGLEEASIATILREVLKALDYLHQN---GHIHRDVKAGNILIDSDGTVKLADFGVSASLFDS  179 (516)
T ss_pred             hhcCCcHHHHHHHHc--cccccHHHHHHHHHHHHHHHHHHHhc---CceecccccccEEEcCCCcEEEcCceeeeeeccc
Confidence            999999999998743  45689999999999999999999988   8999999999999999999999999987665443


Q ss_pred             Ccc-----eeecccceEEecccc
Q 005587          668 SVS-----QVSHNLTIMRAGGVT  685 (689)
Q Consensus       668 ~~~-----~~~~~~~~~~apE~~  685 (689)
                      ...     ....++++|||||++
T Consensus       180 G~R~~~rf~tfvgtp~wmAPEvl  202 (516)
T KOG0582|consen  180 GDRQVTRFNTFVGTPCWMAPEVL  202 (516)
T ss_pred             CceeeEeeccccCcccccChHHh
Confidence            322     223678899999996

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.96  E-value=7.6e-28  Score=253.73  Aligned_cols=172  Identities=25%  Similarity=0.419  Sum_probs=147.4

Q ss_pred             cCCCccceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      +...+.++||+|.||.|..|+...+.+||||+++.... .....+|.+|+++|.+++|||||.++|+|..++.+++|+||
T Consensus       538 s~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~-~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~EY  616 (807)
T KOG1094|consen  538 SRLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDAT-KNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMITEY  616 (807)
T ss_pred             hheehhhhhcCcccceeEEEEecCceEEEEeecCcccc-hhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHHHH
Confidence            34566789999999999999998889999999976543 34468999999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      |++|+|.+++..+..  ..+.-...++|+.||+.||+||.+.   ++|||||.+.|+|+|.++++||+|||+++-+-.++
T Consensus       617 mEnGDLnqFl~ahea--pt~~t~~~vsi~tqiasgmaYLes~---nfVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg~  691 (807)
T KOG1094|consen  617 MENGDLNQFLSAHEL--PTAETAPGVSICTQIASGMAYLESL---NFVHRDLATRNCLVDGEFTIKIADFGMSRNLYSGD  691 (807)
T ss_pred             HhcCcHHHHHHhccC--cccccchhHHHHHHHHHHHHHHHhh---chhhccccccceeecCcccEEecCcccccccccCC
Confidence            999999999987542  2234456778999999999999998   89999999999999999999999999999887777


Q ss_pred             cceeeccc---ceEEeccccc
Q 005587          669 VSQVSHNL---TIMRAGGVTH  686 (689)
Q Consensus       669 ~~~~~~~~---~~~~apE~~~  686 (689)
                      ........   .-|||+|.+.
T Consensus       692 yy~vqgr~vlpiRwmawEsil  712 (807)
T KOG1094|consen  692 YYRVQGRAVLPIRWMAWESIL  712 (807)
T ss_pred             ceeeecceeeeeeehhHHHHH
Confidence            55433222   3499999874

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.96  E-value=6.9e-29  Score=251.51  Aligned_cols=173  Identities=24%  Similarity=0.339  Sum_probs=145.7

Q ss_pred             CCCccceEeecCCeEEEEEE-eCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCC-cceecEEEEeCC------e
Q 005587          510 SFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN-IVELKGYCAEHG------Q  581 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~Hpn-Iv~l~~~~~~~~------~  581 (689)
                      .|...++||+|+||+||+|+ ..+|+.||+|+++.....+.......+|+.+++.++|+| ||.+++++...+      .
T Consensus        12 ~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~~~   91 (323)
T KOG0594|consen   12 DYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGIGK   91 (323)
T ss_pred             HHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccccce
Confidence            45666789999999999995 457899999999876543344556789999999999999 999999998877      8


Q ss_pred             EEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCC
Q 005587          582 RLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA  661 (689)
Q Consensus       582 ~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla  661 (689)
                      .++|+||++. +|.+++.........++...+..+++|+++||+|||+.   +|+||||||.|||+++.|.+||+|||+|
T Consensus        92 l~lvfe~~d~-DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~---~IlHRDLKPQNlLi~~~G~lKlaDFGlA  167 (323)
T KOG0594|consen   92 LYLVFEFLDR-DLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSH---GILHRDLKPQNLLISSSGVLKLADFGLA  167 (323)
T ss_pred             EEEEEEeecc-cHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhC---CeecccCCcceEEECCCCcEeeeccchH
Confidence            8999999954 99999987542224577788999999999999999998   8999999999999999999999999999


Q ss_pred             cccc-CCCcceeecccceEEeccccc
Q 005587          662 PLIS-SGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       662 ~~~~-~~~~~~~~~~~~~~~apE~~~  686 (689)
                      +.+. +.........|-+|+|||++.
T Consensus       168 ra~~ip~~~yt~evvTlWYRaPEvLl  193 (323)
T KOG0594|consen  168 RAFSIPMRTYTPEVVTLWYRAPEVLL  193 (323)
T ss_pred             HHhcCCcccccccEEEeeccCHHHhc
Confidence            9776 333344456678899999984

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.96  E-value=1.2e-29  Score=256.48  Aligned_cols=167  Identities=25%  Similarity=0.336  Sum_probs=141.0

Q ss_pred             CCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCC-----eEE
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHG-----QRL  583 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~-----~~~  583 (689)
                      .|...+++|.|+||.||+|... +++.||||++-....      .--+|+++|++++|||||++.-+|....     +..
T Consensus        25 ~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r------~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~ln   98 (364)
T KOG0658|consen   25 SYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKR------YKNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLN   98 (364)
T ss_pred             EEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCC------cCcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHH
Confidence            4566789999999999999754 579999999854321      2236889999999999999988887532     335


Q ss_pred             EEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCC-CcEEEEeecCCc
Q 005587          584 LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDD-LAVSVSDCGLAP  662 (689)
Q Consensus       584 lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~-~~~kl~DFGla~  662 (689)
                      +|||||+. +|+++++.....+..++...+.-++.|+.+||.|||+.   +|+||||||.|||+|.+ |.+||||||-|+
T Consensus        99 lVleymP~-tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~---~IcHRDIKPqNlLvD~~tg~LKicDFGSAK  174 (364)
T KOG0658|consen   99 LVLEYMPE-TLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSH---GICHRDIKPQNLLVDPDTGVLKICDFGSAK  174 (364)
T ss_pred             HHHHhchH-HHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhc---CcccCCCChheEEEcCCCCeEEeccCCcce
Confidence            89999987 99999986433456778888889999999999999996   89999999999999965 899999999999


Q ss_pred             cccCCCcceeecccceEEeccccc
Q 005587          663 LISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       663 ~~~~~~~~~~~~~~~~~~apE~~~  686 (689)
                      .+..++.+..-.-+.+|||||.+-
T Consensus       175 ~L~~~epniSYicSRyYRaPELif  198 (364)
T KOG0658|consen  175 VLVKGEPNISYICSRYYRAPELIF  198 (364)
T ss_pred             eeccCCCceeEEEeccccCHHHHc
Confidence            999999888788899999999983

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.96  E-value=1e-28  Score=261.56  Aligned_cols=169  Identities=26%  Similarity=0.449  Sum_probs=146.3

Q ss_pred             CCccceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccC
Q 005587          511 FSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCS  590 (689)
Q Consensus       511 f~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~  590 (689)
                      +...+.||+|.||.||.|.+.....||+|.+.....   ..+.|.+|+++|++|+|+|||+++++|..++.+|||||||+
T Consensus       208 l~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~m---~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE~m~  284 (468)
T KOG0197|consen  208 LKLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEGSM---SPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTEYMP  284 (468)
T ss_pred             HHHHHHhcCCccceEEEEEEcCCCcccceEEecccc---ChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEEecc
Confidence            345678999999999999998777999999976533   35678999999999999999999999999989999999999


Q ss_pred             CCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCcc
Q 005587          591 NGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVS  670 (689)
Q Consensus       591 ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~  670 (689)
                      .|+|.++|+...  ...+...+.+.|+.|||+||+||++.   ++|||||.+.|||++++..+||+||||||.+.++...
T Consensus       285 ~GsLl~yLr~~~--~~~l~~~~Ll~~a~qIaeGM~YLes~---~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d~~Y~  359 (468)
T KOG0197|consen  285 KGSLLDYLRTRE--GGLLNLPQLLDFAAQIAEGMAYLESK---NYIHRDLAARNILVDEDLVVKISDFGLARLIGDDEYT  359 (468)
T ss_pred             cCcHHHHhhhcC--CCccchHHHHHHHHHHHHHHHHHHhC---CccchhhhhhheeeccCceEEEcccccccccCCCcee
Confidence            999999998733  45688899999999999999999998   8999999999999999999999999999976665544


Q ss_pred             eeeccc-ce-EEecccccc
Q 005587          671 QVSHNL-TI-MRAGGVTHR  687 (689)
Q Consensus       671 ~~~~~~-~~-~~apE~~~~  687 (689)
                      ....+. +. +.|||.+++
T Consensus       360 ~~~~~kfPIkWtAPEa~~~  378 (468)
T KOG0197|consen  360 ASEGGKFPIKWTAPEALNY  378 (468)
T ss_pred             ecCCCCCCceecCHHHHhh
Confidence            433333 22 779999864

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=7.7e-29  Score=262.87  Aligned_cols=168  Identities=25%  Similarity=0.381  Sum_probs=150.9

Q ss_pred             cCCCccceEeecCCeEEEEE-EeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~-~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      ..|.....||+|+.|.||.| +..+++.||||++.....  ...+-+..|+.+|+..+|+|||.+++.|...+++|+|||
T Consensus       273 ~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q--~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVME  350 (550)
T KOG0578|consen  273 SKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQ--PKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVME  350 (550)
T ss_pred             hhhcchhhhccccccceeeeeeccCCceEEEEEEEeccC--CchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEEe
Confidence            45777789999999999999 456789999999977643  445678899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      ||+||+|.|++..     ..+++.++..|.+++++||+|||..   +|||||||.+|||++.+|.+||+|||++..+...
T Consensus       351 ym~ggsLTDvVt~-----~~~~E~qIA~Icre~l~aL~fLH~~---gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~  422 (550)
T KOG0578|consen  351 YMEGGSLTDVVTK-----TRMTEGQIAAICREILQGLKFLHAR---GIIHRDIKSDNILLTMDGSVKLTDFGFCAQISEE  422 (550)
T ss_pred             ecCCCchhhhhhc-----ccccHHHHHHHHHHHHHHHHHHHhc---ceeeeccccceeEeccCCcEEEeeeeeeeccccc
Confidence            9999999999875     3589999999999999999999998   8999999999999999999999999999988765


Q ss_pred             C-cceeecccceEEeccccc
Q 005587          668 S-VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~-~~~~~~~~~~~~apE~~~  686 (689)
                      . ......||+||||||+..
T Consensus       423 ~~KR~TmVGTPYWMAPEVvt  442 (550)
T KOG0578|consen  423 QSKRSTMVGTPYWMAPEVVT  442 (550)
T ss_pred             cCccccccCCCCccchhhhh
Confidence            5 666688999999999985

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.95  E-value=2e-28  Score=257.75  Aligned_cols=149  Identities=23%  Similarity=0.335  Sum_probs=134.4

Q ss_pred             ccCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCCh-hhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEE
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQ-QKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLI  585 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~-~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV  585 (689)
                      .++|++..+||+|+||.||+|+. .+|..+|+|++++..... ...+..+.|-.+|...++|+||+++..|.+.+++|||
T Consensus       140 ~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LYLi  219 (550)
T KOG0605|consen  140 LDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYLYLI  219 (550)
T ss_pred             cccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCeeEEE
Confidence            46899999999999999999965 569999999998765432 3345678899999999999999999999999999999


Q ss_pred             EeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcc
Q 005587          586 YEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPL  663 (689)
Q Consensus       586 ~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~  663 (689)
                      |||++|||+..+|..    ...+++..+..++.+++-|++-||..   |+|||||||+|+|||..|++||+||||++-
T Consensus       220 MEylPGGD~mTLL~~----~~~L~e~~arfYiaE~vlAI~~iH~~---gyIHRDIKPdNlLiD~~GHiKLSDFGLs~g  290 (550)
T KOG0605|consen  220 MEYLPGGDMMTLLMR----KDTLTEDWARFYIAETVLAIESIHQL---GYIHRDIKPDNLLIDAKGHIKLSDFGLSTG  290 (550)
T ss_pred             EEecCCccHHHHHHh----cCcCchHHHHHHHHHHHHHHHHHHHc---CcccccCChhheeecCCCCEeeccccccch
Confidence            999999999999986    45789999999999999999999988   999999999999999999999999999863

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.95  E-value=1.2e-28  Score=254.94  Aligned_cols=176  Identities=27%  Similarity=0.368  Sum_probs=145.5

Q ss_pred             hhhccCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChh------------hHHHHHHHHHHHhcCCCCCcce
Q 005587          505 QQYTNSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQ------------KDDEFLELVNNIDRIRHANIVE  571 (689)
Q Consensus       505 ~~~~~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~------------~~~~~~~e~~~l~~l~HpnIv~  571 (689)
                      ....++|++.+.||+|.||.|-+|+.. +++.||||++.+.....+            ..+...+|+.+|++++|||||+
T Consensus        93 ~k~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~  172 (576)
T KOG0585|consen   93 RKQLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVK  172 (576)
T ss_pred             ceehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeE
Confidence            345588999999999999999999754 689999999976422111            1247889999999999999999


Q ss_pred             ecEEEEe--CCeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecC
Q 005587          572 LKGYCAE--HGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDD  649 (689)
Q Consensus       572 l~~~~~~--~~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~  649 (689)
                      |+++..+  .+++|||+|||..|.+...=.    ....+.+.++++|.+++..||+|||.+   +||||||||+|+||++
T Consensus       173 LiEvLDDP~s~~~YlVley~s~G~v~w~p~----d~~els~~~Ar~ylrDvv~GLEYLH~Q---giiHRDIKPsNLLl~~  245 (576)
T KOG0585|consen  173 LIEVLDDPESDKLYLVLEYCSKGEVKWCPP----DKPELSEQQARKYLRDVVLGLEYLHYQ---GIIHRDIKPSNLLLSS  245 (576)
T ss_pred             EEEeecCcccCceEEEEEeccCCccccCCC----CcccccHHHHHHHHHHHHHHHHHHHhc---CeeccccchhheEEcC
Confidence            9999876  468999999999998854321    122389999999999999999999998   8999999999999999


Q ss_pred             CCcEEEEeecCCccccCC------CcceeecccceEEecccccc
Q 005587          650 DLAVSVSDCGLAPLISSG------SVSQVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       650 ~~~~kl~DFGla~~~~~~------~~~~~~~~~~~~~apE~~~~  687 (689)
                      +|.+||+|||.+-....+      ..-..+.||+.|+|||..+.
T Consensus       246 ~g~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~  289 (576)
T KOG0585|consen  246 DGTVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSG  289 (576)
T ss_pred             CCcEEeeccceeeecccCCccccHHHHhhcCCCccccchHhhcC
Confidence            999999999999877333      22244789999999998753

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.95  E-value=8.1e-30  Score=243.05  Aligned_cols=174  Identities=22%  Similarity=0.311  Sum_probs=154.2

Q ss_pred             hccCCCccceEeecCCeEEEEE-EeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEE
Q 005587          507 YTNSFSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLI  585 (689)
Q Consensus       507 ~~~~f~~~~~iG~G~~G~Vy~~-~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV  585 (689)
                      +++.|++.++||+|.|+.||++ ...+|+.+|+|++........+.+++.+|+++.+.|+|||||++.+.+.+.+..|||
T Consensus         9 f~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylv   88 (355)
T KOG0033|consen    9 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV   88 (355)
T ss_pred             cchhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEE
Confidence            4578889999999999999999 567899999999987665566778899999999999999999999999999999999


Q ss_pred             EeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEec---CCCcEEEEeecCCc
Q 005587          586 YEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLD---DDLAVSVSDCGLAP  662 (689)
Q Consensus       586 ~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~---~~~~~kl~DFGla~  662 (689)
                      +|+|.||+|..-|-.    ...+++..+..+++||++||.|+|..   +|||||+||+|+|+-   ....+||+|||+|.
T Consensus        89 Fe~m~G~dl~~eIV~----R~~ySEa~aSH~~rQiLeal~yCH~n---~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi  161 (355)
T KOG0033|consen   89 FDLVTGGELFEDIVA----REFYSEADASHCIQQILEALAYCHSN---GIVHRDLKPENLLLASKAKGAAVKLADFGLAI  161 (355)
T ss_pred             EecccchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhc---CceeccCChhheeeeeccCCCceeecccceEE
Confidence            999999999766554    24577888999999999999999998   899999999999994   34468999999999


Q ss_pred             cccCCCcceeecccceEEecccccc
Q 005587          663 LISSGSVSQVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       663 ~~~~~~~~~~~~~~~~~~apE~~~~  687 (689)
                      .+..+....--.++++||||||+.+
T Consensus       162 ~l~~g~~~~G~~GtP~fmaPEvvrk  186 (355)
T KOG0033|consen  162 EVNDGEAWHGFAGTPGYLSPEVLKK  186 (355)
T ss_pred             EeCCccccccccCCCcccCHHHhhc
Confidence            9998887777889999999999864

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.95  E-value=1.6e-28  Score=237.44  Aligned_cols=174  Identities=26%  Similarity=0.384  Sum_probs=154.0

Q ss_pred             hhccCCCccceEeecCCeEEEEEE-eCCCcEEEEEEeccccCC------hhhHHHHHHHHHHHhcC-CCCCcceecEEEE
Q 005587          506 QYTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASS------QQKDDEFLELVNNIDRI-RHANIVELKGYCA  577 (689)
Q Consensus       506 ~~~~~f~~~~~iG~G~~G~Vy~~~-~~~g~~vAvK~l~~~~~~------~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~  577 (689)
                      .+.+.|...+.||.|..++|.++. .++|+++|+|++......      ..-.++-.+|+.+|+++ .||+|+++.++|+
T Consensus        14 ~fy~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~ye   93 (411)
T KOG0599|consen   14 GFYAKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYE   93 (411)
T ss_pred             hHHhhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeecc
Confidence            445678888999999999999984 567899999998643211      12234556889999887 6999999999999


Q ss_pred             eCCeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEe
Q 005587          578 EHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSD  657 (689)
Q Consensus       578 ~~~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~D  657 (689)
                      ++...++|+|.|+.|.|+|+|.+    .-.++++...+|++|+.+|++|||..   +||||||||+|||+|++.++||+|
T Consensus        94 s~sF~FlVFdl~prGELFDyLts----~VtlSEK~tR~iMrqlfegVeylHa~---~IVHRDLKpENILlddn~~i~isD  166 (411)
T KOG0599|consen   94 SDAFVFLVFDLMPRGELFDYLTS----KVTLSEKETRRIMRQLFEGVEYLHAR---NIVHRDLKPENILLDDNMNIKISD  166 (411)
T ss_pred             CcchhhhhhhhcccchHHHHhhh----heeecHHHHHHHHHHHHHHHHHHHHh---hhhhcccChhheeeccccceEEec
Confidence            99999999999999999999986    45789999999999999999999998   899999999999999999999999


Q ss_pred             ecCCccccCCCcceeecccceEEeccccc
Q 005587          658 CGLAPLISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       658 FGla~~~~~~~~~~~~~~~~~~~apE~~~  686 (689)
                      ||+|..+.+|..-...++|+.|.|||++.
T Consensus       167 FGFa~~l~~GekLrelCGTPgYLAPEtik  195 (411)
T KOG0599|consen  167 FGFACQLEPGEKLRELCGTPGYLAPETIK  195 (411)
T ss_pred             cceeeccCCchhHHHhcCCCcccChhhee
Confidence            99999999999999999999999999984

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=1.6e-28  Score=234.13  Aligned_cols=172  Identities=23%  Similarity=0.302  Sum_probs=151.6

Q ss_pred             cCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCC-hhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASS-QQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~-~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      ++|++++.||+|.||.||.|+. +++..||+|++.+.... .+...++.+|+++-+.|+||||.++|++|.+....||++
T Consensus        22 ~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyLil  101 (281)
T KOG0580|consen   22 DDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYLIL  101 (281)
T ss_pred             hhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeEEEE
Confidence            6789999999999999999964 56889999998765432 234678999999999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      ||..+|+|+..|.+..  ...+++.....++.|+|.||.|+|..   +||||||||+|+|++..+.+||+|||.+..-. 
T Consensus       102 Eya~~gel~k~L~~~~--~~~f~e~~~a~Yi~q~A~Al~y~h~k---~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p-  175 (281)
T KOG0580|consen  102 EYAPRGELYKDLQEGR--MKRFDEQRAATYIKQLANALLYCHLK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAP-  175 (281)
T ss_pred             EecCCchHHHHHHhcc--cccccccchhHHHHHHHHHHHHhccC---CcccCCCCHHHhccCCCCCeeccCCCceeecC-
Confidence            9999999999998644  45678888999999999999999987   89999999999999999999999999999876 


Q ss_pred             CCcceeecccceEEeccccc
Q 005587          667 GSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 ~~~~~~~~~~~~~~apE~~~  686 (689)
                      .......++|--|.+||...
T Consensus       176 ~~kR~tlcgt~dyl~pEmv~  195 (281)
T KOG0580|consen  176 SNKRKTLCGTLDYLPPEMVE  195 (281)
T ss_pred             CCCceeeecccccCCHhhcC
Confidence            44455578888999999873

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.95  E-value=2.9e-27  Score=255.87  Aligned_cols=150  Identities=23%  Similarity=0.318  Sum_probs=132.8

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccC-ChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      ++|++.+.||+|+||.||+|+.. +++.||||++.+... .......+.+|+.++.+++|+||+++++++.+.+..|+||
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~   80 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIM   80 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEE
Confidence            46888999999999999999654 689999999975432 1233456788999999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcccc
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS  665 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~  665 (689)
                      ||++||+|.+++..    ...+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.+.
T Consensus        81 E~~~gg~L~~~l~~----~~~l~~~~~~~~~~qi~~aL~~lH~~---givHrDlKp~NILi~~~~~vkL~DFGla~~~~  152 (363)
T cd05628          81 EFLPGGDMMTLLMK----KDTLTEEETQFYIAETVLAIDSIHQL---GFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLK  152 (363)
T ss_pred             cCCCCCcHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHhC---CeEecCCCHHHeEECCCCCEEEeeccCccccc
Confidence            99999999999975    34688999999999999999999987   89999999999999999999999999998654

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=2e-27  Score=256.76  Aligned_cols=171  Identities=23%  Similarity=0.302  Sum_probs=148.9

Q ss_pred             ccCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCC-hhhHHHHHHHHHHHhcC-CCCCcceecEEEEeCCeEEE
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASS-QQKDDEFLELVNNIDRI-RHANIVELKGYCAEHGQRLL  584 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~~~~~~l  584 (689)
                      .++|....+||+|.||+|+++..+ +++.+|||.+++...- .++.+....|.+++... +||.++.++.+|.+.+++|+
T Consensus       367 l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l~f  446 (694)
T KOG0694|consen  367 LDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEHLFF  446 (694)
T ss_pred             ccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCeEEE
Confidence            468999999999999999999765 5889999999887533 34456677777777655 59999999999999999999


Q ss_pred             EEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccc
Q 005587          585 IYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI  664 (689)
Q Consensus       585 V~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~  664 (689)
                      ||||+.||++..+.+     ...+++..+.-|+..|+.||.|||++   +|||||||.+|||||.+|.+||+||||+|..
T Consensus       447 vmey~~Ggdm~~~~~-----~~~F~e~rarfyaAev~l~L~fLH~~---~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~  518 (694)
T KOG0694|consen  447 VMEYVAGGDLMHHIH-----TDVFSEPRARFYAAEVVLGLQFLHEN---GIIYRDLKLDNLLLDTEGHVKIADFGLCKEG  518 (694)
T ss_pred             EEEecCCCcEEEEEe-----cccccHHHHHHHHHHHHHHHHHHHhc---CceeeecchhheEEcccCcEEeccccccccc
Confidence            999999999654444     35689999999999999999999998   8999999999999999999999999999975


Q ss_pred             c-CCCcceeecccceEEeccccc
Q 005587          665 S-SGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       665 ~-~~~~~~~~~~~~~~~apE~~~  686 (689)
                      - .+......+||+.||||||+.
T Consensus       519 m~~g~~TsTfCGTpey~aPEil~  541 (694)
T KOG0694|consen  519 MGQGDRTSTFCGTPEFLAPEVLT  541 (694)
T ss_pred             CCCCCccccccCChhhcChhhhc
Confidence            4 677777889999999999984

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.95  E-value=1.1e-26  Score=240.59  Aligned_cols=163  Identities=34%  Similarity=0.522  Sum_probs=139.2

Q ss_pred             CccceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHh--cCCCCCcceecEEEEeCC----eEEEE
Q 005587          512 SQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNID--RIRHANIVELKGYCAEHG----QRLLI  585 (689)
Q Consensus       512 ~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~--~l~HpnIv~l~~~~~~~~----~~~lV  585 (689)
                      ++.++||+|.||.||+|++. ++.||||++..     +....|..|-++.+  .++|+||++++++-+...    +++||
T Consensus       213 ~l~eli~~Grfg~V~KaqL~-~~~VAVKifp~-----~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywLV  286 (534)
T KOG3653|consen  213 QLLELIGRGRFGCVWKAQLD-NRLVAVKIFPE-----QEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWLV  286 (534)
T ss_pred             hhHHHhhcCccceeehhhcc-CceeEEEecCH-----HHHHHHHhHHHHHhccCccchhHHHhhchhccCCccccceeEE
Confidence            34578999999999999984 59999999864     34567777777765  568999999999876655    89999


Q ss_pred             EeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCC------CCCcEEecccCCCeEecCCCcEEEEeec
Q 005587          586 YEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEIC------QPPIVHRNFKSANILLDDDLAVSVSDCG  659 (689)
Q Consensus       586 ~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~------~~~iiHrDlKp~NILl~~~~~~kl~DFG  659 (689)
                      +||.+.|+|.++|+.     ..++|....+|+..+++||+|||+..      .++|+|||||..|||+.+|+.+.|+|||
T Consensus       287 t~fh~kGsL~dyL~~-----ntisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFG  361 (534)
T KOG3653|consen  287 TEFHPKGSLCDYLKA-----NTISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFG  361 (534)
T ss_pred             eeeccCCcHHHHHHh-----ccccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeeccc
Confidence            999999999999985     57999999999999999999999753      3579999999999999999999999999


Q ss_pred             CCccccCCCccee---ecccceEEecccc
Q 005587          660 LAPLISSGSVSQV---SHNLTIMRAGGVT  685 (689)
Q Consensus       660 la~~~~~~~~~~~---~~~~~~~~apE~~  685 (689)
                      ||..+..+....+   ..||.-|||||++
T Consensus       362 LAl~~~p~~~~~d~~~qVGT~RYMAPEvL  390 (534)
T KOG3653|consen  362 LALRLEPGKPQGDTHGQVGTRRYMAPEVL  390 (534)
T ss_pred             eeEEecCCCCCcchhhhhhhhhhcCHHHH
Confidence            9998876543322   5677789999998

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.95  E-value=3.8e-27  Score=255.32  Aligned_cols=173  Identities=18%  Similarity=0.238  Sum_probs=147.9

Q ss_pred             hhccCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccC-ChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEE
Q 005587          506 QYTNSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRL  583 (689)
Q Consensus       506 ~~~~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~  583 (689)
                      ...++|++.+.||+|+||.||+++.. +++.||+|++.+... .......+.+|+.+++.++||||+++++++...+..|
T Consensus        40 ~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~  119 (370)
T cd05621          40 MKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKYLY  119 (370)
T ss_pred             CCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEE
Confidence            34568999999999999999999765 588999999865322 2233456789999999999999999999999999999


Q ss_pred             EEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcc
Q 005587          584 LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPL  663 (689)
Q Consensus       584 lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~  663 (689)
                      +||||+++|+|.+++..     ..+++..+..++.||+.||+|||+.   +|+||||||+|||+++++.+||+|||+|+.
T Consensus       120 lv~Ey~~gg~L~~~l~~-----~~~~~~~~~~~~~qil~aL~~LH~~---~IvHrDLKp~NILl~~~~~~kL~DFG~a~~  191 (370)
T cd05621         120 MVMEYMPGGDLVNLMSN-----YDVPEKWAKFYTAEVVLALDAIHSM---GLIHRDVKPDNMLLDKHGHLKLADFGTCMK  191 (370)
T ss_pred             EEEcCCCCCcHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHEEECCCCCEEEEeccccee
Confidence            99999999999999964     2478889999999999999999987   899999999999999999999999999998


Q ss_pred             ccCCCc--ceeecccceEEeccccc
Q 005587          664 ISSGSV--SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       664 ~~~~~~--~~~~~~~~~~~apE~~~  686 (689)
                      +.....  .....++..|+|||++.
T Consensus       192 ~~~~~~~~~~~~~gt~~Y~aPE~~~  216 (370)
T cd05621         192 MDETGMVRCDTAVGTPDYISPEVLK  216 (370)
T ss_pred             cccCCceecccCCCCcccCCHHHHh
Confidence            754332  12345788999999974

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.95  E-value=6.3e-27  Score=244.44  Aligned_cols=172  Identities=25%  Similarity=0.296  Sum_probs=147.0

Q ss_pred             CCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCC-hhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          510 SFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASS-QQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~-~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      .|+..+.||+|+||.||+|.. .+|+.||||.+...... ......+.+|++++++++|+||+++++++...+..++|||
T Consensus         1 ~f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e   80 (285)
T cd05631           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             CceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEE
Confidence            367788999999999999965 57999999998754322 2234567889999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+++|+|.+++....  ...+++..++.++.|++.||+|||+.   +|+||||||+|||+++++.+||+|||+++.+...
T Consensus        81 ~~~~g~L~~~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~~  155 (285)
T cd05631          81 IMNGGDLKFHIYNMG--NPGFDEQRAIFYAAELCCGLEDLQRE---RIVYRDLKPENILLDDRGHIRISDLGLAVQIPEG  155 (285)
T ss_pred             ecCCCcHHHHHHhhC--CCCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHEEECCCCCEEEeeCCCcEEcCCC
Confidence            999999998886432  34589999999999999999999987   8999999999999999999999999999987655


Q ss_pred             CcceeecccceEEeccccc
Q 005587          668 SVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~~~~~~~~~~~~apE~~~  686 (689)
                      .......++..|+|||++.
T Consensus       156 ~~~~~~~g~~~y~aPE~~~  174 (285)
T cd05631         156 ETVRGRVGTVGYMAPEVIN  174 (285)
T ss_pred             CeecCCCCCCCccCHhhhc
Confidence            5444456788899999984

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=5.4e-27  Score=255.09  Aligned_cols=149  Identities=25%  Similarity=0.312  Sum_probs=131.6

Q ss_pred             cCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccC-ChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      ++|.+.+.||+|+||.||+|+. .+++.||||++.+... .......+.+|++++++++|||||++++++.+.+..|+||
T Consensus         1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~   80 (377)
T cd05629           1 EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIM   80 (377)
T ss_pred             CCceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEE
Confidence            4688899999999999999965 4789999999865422 2233467888999999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccc
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI  664 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~  664 (689)
                      ||++||+|.+++...    ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.+
T Consensus        81 E~~~gg~L~~~l~~~----~~~~~~~~~~~~~ql~~aL~~LH~~---givHrDlkp~NIll~~~~~~kl~DfGla~~~  151 (377)
T cd05629          81 EFLPGGDLMTMLIKY----DTFSEDVTRFYMAECVLAIEAVHKL---GFIHRDIKPDNILIDRGGHIKLSDFGLSTGF  151 (377)
T ss_pred             eCCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEECCCCCEEEeeccccccc
Confidence            999999999998753    4678899999999999999999987   8999999999999999999999999999743

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.95  E-value=4.3e-27  Score=251.79  Aligned_cols=172  Identities=26%  Similarity=0.376  Sum_probs=153.9

Q ss_pred             hccCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCCh-hhHHHHHHHHHHHhcCC-CCCcceecEEEEeCCeEE
Q 005587          507 YTNSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQ-QKDDEFLELVNNIDRIR-HANIVELKGYCAEHGQRL  583 (689)
Q Consensus       507 ~~~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~-~~~~~~~~e~~~l~~l~-HpnIv~l~~~~~~~~~~~  583 (689)
                      ....|++.+.||+|.||.||+|+.+ +|+.+|+|.+.+..... .....+.+|+++|+++. |||||.+++.|++.+.++
T Consensus        33 ~~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~  112 (382)
T KOG0032|consen   33 IKEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVY  112 (382)
T ss_pred             ccccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEE
Confidence            3457888899999999999999665 59999999998765422 24568899999999998 999999999999999999


Q ss_pred             EEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecC----CCcEEEEeec
Q 005587          584 LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDD----DLAVSVSDCG  659 (689)
Q Consensus       584 lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~----~~~~kl~DFG  659 (689)
                      +|||+|.||.|++.+...     .+++..+..++.|++.++.|||+.   +|+||||||+|+|+..    ++.+|++|||
T Consensus       113 lvmEL~~GGeLfd~i~~~-----~~sE~da~~~~~~il~av~~lH~~---gvvHrDlKpEN~L~~~~~~~~~~ik~~DFG  184 (382)
T KOG0032|consen  113 LVMELCEGGELFDRIVKK-----HYSERDAAGIIRQILEAVKYLHSL---GVVHRDLKPENLLLASKDEGSGRIKLIDFG  184 (382)
T ss_pred             EEEEecCCchHHHHHHHc-----cCCHHHHHHHHHHHHHHHHHHHhC---CceeccCCHHHeeeccccCCCCcEEEeeCC
Confidence            999999999999999764     389999999999999999999997   8999999999999953    3579999999


Q ss_pred             CCccccCCCcceeecccceEEeccccc
Q 005587          660 LAPLISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       660 la~~~~~~~~~~~~~~~~~~~apE~~~  686 (689)
                      +|+....+..-....++++|+|||++.
T Consensus       185 la~~~~~~~~~~~~~Gtp~y~APEvl~  211 (382)
T KOG0032|consen  185 LAKFIKPGERLHTIVGTPEYVAPEVLG  211 (382)
T ss_pred             CceEccCCceEeeecCCccccCchhhc
Confidence            999999988888899999999999997

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=5e-27  Score=254.06  Aligned_cols=150  Identities=23%  Similarity=0.341  Sum_probs=133.2

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccC-ChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      ++|++.+.||+|+||.||+|+.. +|+.||||++..... .......+.+|++++..++||||+++++++...+..|+||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIM   80 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEE
Confidence            46888999999999999999764 689999999975422 1233456788999999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcccc
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS  665 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~  665 (689)
                      ||+++|+|.+++...    ..+++..+..|+.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.+.
T Consensus        81 E~~~~g~L~~~l~~~----~~l~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~  152 (364)
T cd05599          81 EYLPGGDMMTLLMKK----DTFTEEETRFYIAETILAIDSIHKL---GYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLK  152 (364)
T ss_pred             CCCCCcHHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeEECCCCCEEEeecccceecc
Confidence            999999999999753    3589999999999999999999987   89999999999999999999999999998654

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=1.2e-27  Score=241.70  Aligned_cols=171  Identities=23%  Similarity=0.342  Sum_probs=146.1

Q ss_pred             ccCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEe-----CCe
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAE-----HGQ  581 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~-----~~~  581 (689)
                      ...|...+.||+|+||.|..|.. .+|+.||||++..........++..+|+++|+.++|+|||.+++.+..     -..
T Consensus        21 ~~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~D  100 (359)
T KOG0660|consen   21 PRYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFND  100 (359)
T ss_pred             cceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeecccccccccce
Confidence            34566678899999999999954 579999999998666666677888999999999999999999998865     357


Q ss_pred             EEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCC
Q 005587          582 RLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA  661 (689)
Q Consensus       582 ~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla  661 (689)
                      +|+|+|+| +-+|.++++.    .+.++...+..++.|+++||.|+|+.   +|+||||||+|+|++.+..+||+|||||
T Consensus       101 vYiV~elM-etDL~~iik~----~~~L~d~H~q~f~YQiLrgLKyiHSA---nViHRDLKPsNll~n~~c~lKI~DFGLA  172 (359)
T KOG0660|consen  101 VYLVFELM-ETDLHQIIKS----QQDLTDDHAQYFLYQILRGLKYIHSA---NVIHRDLKPSNLLLNADCDLKICDFGLA  172 (359)
T ss_pred             eEEehhHH-hhHHHHHHHc----CccccHHHHHHHHHHHHHhcchhhcc---cccccccchhheeeccCCCEEeccccce
Confidence            89999999 5699999986    34588899999999999999999998   8999999999999999999999999999


Q ss_pred             ccccCC---CcceeecccceEEeccccc
Q 005587          662 PLISSG---SVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       662 ~~~~~~---~~~~~~~~~~~~~apE~~~  686 (689)
                      +.....   ..-.....|.+|+|||+..
T Consensus       173 R~~~~~~~~~~mTeYVaTRWYRAPElll  200 (359)
T KOG0660|consen  173 RYLDKFFEDGFMTEYVATRWYRAPELLL  200 (359)
T ss_pred             eeccccCcccchhcceeeeeecCHHHHh
Confidence            998642   2212245688999999984

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.94  E-value=8e-27  Score=248.27  Aligned_cols=165  Identities=25%  Similarity=0.308  Sum_probs=141.2

Q ss_pred             ceEeecCCeEEEEEEe-CCCcEEEEEEeccccC-ChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccCCC
Q 005587          515 NLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNG  592 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~gg  592 (689)
                      +.||+|+||.||+|+. .+|+.||||++..... .......+.+|++++++++||||+++++++...+..|+||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~   80 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCC
Confidence            4699999999999965 4789999999875432 2234456788999999999999999999999999999999999999


Q ss_pred             CHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC-CCcce
Q 005587          593 TLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS-GSVSQ  671 (689)
Q Consensus       593 sL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~-~~~~~  671 (689)
                      +|.+++..    ...+++..+..++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+++.... +....
T Consensus        81 ~L~~~l~~----~~~~~~~~~~~~~~qi~~~L~~lH~~---~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~  153 (323)
T cd05571          81 ELFFHLSR----ERVFSEDRARFYGAEIVSALGYLHSC---DVVYRDLKLENLMLDKDGHIKITDFGLCKEGISDGATMK  153 (323)
T ss_pred             cHHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHhC---CeEeCCCCHHHEEECCCCCEEEeeCCCCcccccCCCccc
Confidence            99999875    34688999999999999999999987   899999999999999999999999999986432 23333


Q ss_pred             eecccceEEeccccc
Q 005587          672 VSHNLTIMRAGGVTH  686 (689)
Q Consensus       672 ~~~~~~~~~apE~~~  686 (689)
                      ...++..|+|||++.
T Consensus       154 ~~~gt~~y~aPE~~~  168 (323)
T cd05571         154 TFCGTPEYLAPEVLE  168 (323)
T ss_pred             ceecCccccChhhhc
Confidence            456788999999984

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.94  E-value=7.9e-27  Score=254.09  Aligned_cols=148  Identities=20%  Similarity=0.268  Sum_probs=131.3

Q ss_pred             CCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccC-ChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          510 SFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      .|+..+.||+|+||+||+|+. .+++.||||++..... .......+.+|++++++++||||+++++++.+.+..|+|||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E   81 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD   81 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEe
Confidence            577889999999999999965 4689999999976432 23345678899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccc
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI  664 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~  664 (689)
                      |++||+|.+++...    ..+++..+..++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+++.+
T Consensus        82 ~~~gg~L~~~l~~~----~~~~e~~~~~~~~qi~~aL~~LH~~---givHrDlKp~Nili~~~~~~kL~DFGl~~~~  151 (381)
T cd05626          82 YIPGGDMMSLLIRM----EVFPEVLARFYIAELTLAIESVHKM---GFIHRDIKPDNILIDLDGHIKLTDFGLCTGF  151 (381)
T ss_pred             cCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCcHHHEEECCCCCEEEeeCcCCccc
Confidence            99999999998753    4588899999999999999999987   8999999999999999999999999998654

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.94  E-value=1.4e-26  Score=249.46  Aligned_cols=165  Identities=20%  Similarity=0.325  Sum_probs=139.8

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      ++|+..+.||+|+||.||+|+.. +|+.||||++.... .......+.+|++++++++|+||+++++++...+..++|||
T Consensus        74 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  152 (353)
T PLN00034         74 SELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNH-EDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLE  152 (353)
T ss_pred             HHHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCC-cHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEEEe
Confidence            45667789999999999999754 68999999986543 23445678999999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+++|+|.+..        ...+..+..++.||+.||+|||+.   +|+||||||+|||+++++.+||+|||+++.+...
T Consensus       153 ~~~~~~L~~~~--------~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~  221 (353)
T PLN00034        153 FMDGGSLEGTH--------IADEQFLADVARQILSGIAYLHRR---HIVHRDIKPSNLLINSAKNVKIADFGVSRILAQT  221 (353)
T ss_pred             cCCCCcccccc--------cCCHHHHHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEcCCCCEEEcccccceecccc
Confidence            99999986432        345677889999999999999987   8999999999999999999999999999887543


Q ss_pred             Cc-ceeecccceEEecccc
Q 005587          668 SV-SQVSHNLTIMRAGGVT  685 (689)
Q Consensus       668 ~~-~~~~~~~~~~~apE~~  685 (689)
                      .. .....++..|+|||++
T Consensus       222 ~~~~~~~~gt~~y~aPE~~  240 (353)
T PLN00034        222 MDPCNSSVGTIAYMSPERI  240 (353)
T ss_pred             cccccccccCccccCcccc
Confidence            22 2234577889999987

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.94  E-value=6.5e-27  Score=249.62  Aligned_cols=169  Identities=22%  Similarity=0.305  Sum_probs=147.1

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccC-ChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      ++|++.+.||+|+||.||+|+.. +++.||||++..... .....+.+.+|+.++++++||||+++++++...+..|+||
T Consensus        18 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   97 (329)
T PTZ00263         18 SDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFLL   97 (329)
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEEE
Confidence            56888999999999999999765 689999999875432 1233467889999999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      ||+.+|+|.+++...    ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.+..
T Consensus        98 e~~~~~~L~~~l~~~----~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~  170 (329)
T PTZ00263         98 EFVVGGELFTHLRKA----GRFPNDVAKFYHAELVLAFEYLHSK---DIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPD  170 (329)
T ss_pred             cCCCCChHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEECCCCCEEEeeccCceEcCC
Confidence            999999999999763    4578899999999999999999997   899999999999999999999999999998755


Q ss_pred             CCcceeecccceEEeccccc
Q 005587          667 GSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 ~~~~~~~~~~~~~~apE~~~  686 (689)
                      ...  ...++..|+|||++.
T Consensus       171 ~~~--~~~gt~~y~aPE~~~  188 (329)
T PTZ00263        171 RTF--TLCGTPEYLAPEVIQ  188 (329)
T ss_pred             Ccc--eecCChhhcCHHHHc
Confidence            432  346788899999985

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=5.1e-27  Score=245.95  Aligned_cols=169  Identities=22%  Similarity=0.278  Sum_probs=146.4

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccC-ChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      ++|++.+.||+|+||.||+|... +|+.||+|++..... .......+.+|++++++++||||+++++++.+.+..++||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   80 (291)
T cd05612           1 DDLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLM   80 (291)
T ss_pred             CCceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEE
Confidence            36888899999999999999765 689999999865422 1234556889999999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      ||+++|+|.+++...    ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.+..
T Consensus        81 e~~~~~~L~~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~  153 (291)
T cd05612          81 EYVPGGELFSYLRNS----GRFSNSTGLFYASEIVCALEYLHSK---EIVYRDLKPENILLDKEGHIKLTDFGFAKKLRD  153 (291)
T ss_pred             eCCCCCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHeEECCCCCEEEEecCcchhccC
Confidence            999999999999753    4688999999999999999999987   899999999999999999999999999998754


Q ss_pred             CCcceeecccceEEeccccc
Q 005587          667 GSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 ~~~~~~~~~~~~~~apE~~~  686 (689)
                      ...  ...++..|+|||++.
T Consensus       154 ~~~--~~~gt~~y~aPE~~~  171 (291)
T cd05612         154 RTW--TLCGTPEYLAPEVIQ  171 (291)
T ss_pred             Ccc--cccCChhhcCHHHHc
Confidence            432  245788999999874

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.94  E-value=3.4e-27  Score=245.63  Aligned_cols=167  Identities=25%  Similarity=0.349  Sum_probs=148.0

Q ss_pred             cceEeecCCeEEEEEE-eCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccCCC
Q 005587          514 ENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNG  592 (689)
Q Consensus       514 ~~~iG~G~~G~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~gg  592 (689)
                      .++||+|.||+||-|. .++|+.||||++.+.......+.+++.|+.+|++++||.||.+.-.|++.+.+++|||-+.| 
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl~G-  647 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKLHG-  647 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhhcc-
Confidence            5789999999999995 56899999999998877777788999999999999999999999999999999999999955 


Q ss_pred             CHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecC---CCcEEEEeecCCccccCCCc
Q 005587          593 TLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDD---DLAVSVSDCGLAPLISSGSV  669 (689)
Q Consensus       593 sL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~---~~~~kl~DFGla~~~~~~~~  669 (689)
                      +..++|-..+  ...+++.....++.||+.||.|||..   +|+|+||||+|||+..   .-++||||||+|+++.+.+.
T Consensus       648 DMLEMILSsE--kgRL~er~TkFlvtQIL~ALr~LH~k---nIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEksF  722 (888)
T KOG4236|consen  648 DMLEMILSSE--KGRLPERITKFLVTQILVALRYLHFK---NIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKSF  722 (888)
T ss_pred             hHHHHHHHhh--cccchHHHHHHHHHHHHHHHHHhhhc---ceeeccCCchheeeccCCCCCceeeccccceeecchhhh
Confidence            5555544322  45788888888999999999999987   8999999999999953   44799999999999999998


Q ss_pred             ceeecccceEEeccccc
Q 005587          670 SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       670 ~~~~~~~~~~~apE~~~  686 (689)
                      ...-.+|+.|.|||++.
T Consensus       723 RrsVVGTPAYLaPEVLr  739 (888)
T KOG4236|consen  723 RRSVVGTPAYLAPEVLR  739 (888)
T ss_pred             hhhhcCCccccCHHHHh
Confidence            88899999999999995

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.94  E-value=8.6e-27  Score=249.66  Aligned_cols=169  Identities=22%  Similarity=0.314  Sum_probs=145.7

Q ss_pred             cCCCccceEeecCCeEEEEEEeCC--CcEEEEEEeccccC-ChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPD--GKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLI  585 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~~--g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV  585 (689)
                      ++|++.+.||+|+||.||+|....  +..||+|.+..... .......+.+|+++++.++||||+++++++...+..|+|
T Consensus        30 ~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv  109 (340)
T PTZ00426         30 EDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYLV  109 (340)
T ss_pred             hhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEEEE
Confidence            568889999999999999997543  36899999865432 223345788999999999999999999999999999999


Q ss_pred             EeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcccc
Q 005587          586 YEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS  665 (689)
Q Consensus       586 ~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~  665 (689)
                      |||+++|+|.+++...    ..+++..+..++.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+++.+.
T Consensus       110 ~Ey~~~g~L~~~i~~~----~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~  182 (340)
T PTZ00426        110 LEFVIGGEFFTFLRRN----KRFPNDVGCFYAAQIVLIFEYLQSL---NIVYRDLKPENLLLDKDGFIKMTDFGFAKVVD  182 (340)
T ss_pred             EeCCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeEccCCCHHHEEECCCCCEEEecCCCCeecC
Confidence            9999999999999753    4688999999999999999999987   89999999999999999999999999999875


Q ss_pred             CCCcceeecccceEEeccccc
Q 005587          666 SGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       666 ~~~~~~~~~~~~~~~apE~~~  686 (689)
                      ...  ....++..|+|||++.
T Consensus       183 ~~~--~~~~gt~~y~aPE~~~  201 (340)
T PTZ00426        183 TRT--YTLCGTPEYIAPEILL  201 (340)
T ss_pred             CCc--ceecCChhhcCHHHHh
Confidence            433  3356788899999974

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=1.1e-26  Score=248.23  Aligned_cols=169  Identities=21%  Similarity=0.267  Sum_probs=146.7

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCC-hhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASS-QQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      ++|++.+.||+|+||.||+|+.. +++.||||++...... ......+.+|++++..++||||+++++++...+..|+||
T Consensus         1 ~~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~   80 (333)
T cd05600           1 KDFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAM   80 (333)
T ss_pred             CCcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEE
Confidence            36888999999999999999765 5899999998754321 233567889999999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      ||++||+|.+++..    ...+++..+..++.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+++....
T Consensus        81 e~~~g~~L~~~l~~----~~~l~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~  153 (333)
T cd05600          81 EYVPGGDFRTLLNN----LGVLSEDHARFYMAEMFEAVDALHEL---GYIHRDLKPENFLIDASGHIKLTDFGLSKGIVT  153 (333)
T ss_pred             eCCCCCCHHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEECCCCCEEEEeCcCCccccc
Confidence            99999999999975    34588999999999999999999987   899999999999999999999999999987655


Q ss_pred             CCcceeecccceEEeccccc
Q 005587          667 GSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 ~~~~~~~~~~~~~~apE~~~  686 (689)
                      .  .....++..|+|||++.
T Consensus       154 ~--~~~~~gt~~y~aPE~~~  171 (333)
T cd05600         154 Y--ANSVVGSPDYMAPEVLR  171 (333)
T ss_pred             c--cCCcccCccccChhHhc
Confidence            2  23346788899999874

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.94  E-value=2.1e-27  Score=250.81  Aligned_cols=173  Identities=24%  Similarity=0.417  Sum_probs=157.2

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCe-EEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQ-RLLIY  586 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~-~~lV~  586 (689)
                      ++|...+++|+|+||.++.++.+ ++..|++|.+..........+...+|+.++++++|||||.+.+.|..++. .+|||
T Consensus         4 ~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Ivm   83 (426)
T KOG0589|consen    4 DNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIVM   83 (426)
T ss_pred             chhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEEEE
Confidence            57888999999999999999654 67899999998777666666688999999999999999999999999888 99999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      +||+||++.+.|.+.+  ...++++.++.|+.|++.|+.|||+.   .|+|||||+.||++..++.+||.|||+|+.+..
T Consensus        84 ~Y~eGg~l~~~i~~~k--~~~f~E~~i~~~~~Q~~~av~ylH~~---~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~  158 (426)
T KOG0589|consen   84 EYCEGGDLAQLIKEQK--GVLFPEERILKWFVQILLAVNYLHEN---RVLHRDLKCANIFLTKDKKVKLGDFGLAKILNP  158 (426)
T ss_pred             eecCCCCHHHHHHHHh--hccccHHHHHHHHHHHHHHHHHHHhh---hhhcccchhhhhhccccCceeecchhhhhhcCC
Confidence            9999999999998765  45689999999999999999999977   899999999999999999999999999999988


Q ss_pred             CC-cceeecccceEEeccccc
Q 005587          667 GS-VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 ~~-~~~~~~~~~~~~apE~~~  686 (689)
                      .. ......+|++||.||++-
T Consensus       159 ~~~~a~tvvGTp~YmcPEil~  179 (426)
T KOG0589|consen  159 EDSLASTVVGTPYYMCPEILS  179 (426)
T ss_pred             chhhhheecCCCcccCHHHhC
Confidence            76 777789999999999983

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.94  E-value=9.8e-27  Score=249.09  Aligned_cols=175  Identities=26%  Similarity=0.410  Sum_probs=141.6

Q ss_pred             ccCCCccceEeecCCeEEEEEEe------CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcC-CCCCcceecEEEEeC-
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQL------PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHANIVELKGYCAEH-  579 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~~------~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~~-  579 (689)
                      .++|++.++||+|+||.||+|.+      .+++.||||++.... .......+.+|++++.++ +|||||+++++|... 
T Consensus         6 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~   84 (338)
T cd05102           6 RDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGA-TASEHKALMSELKILIHIGNHLNVVNLLGACTKPN   84 (338)
T ss_pred             hhHceeeeEeccCCcceEEEEEEeccCCcccchhhheecccccc-chHHHHHHHHHHHHHHHhccCcceeeEEeEecCCC
Confidence            35788899999999999999963      235689999987543 233456789999999999 899999999988764 


Q ss_pred             CeEEEEEeccCCCCHHHHHhcCccc-------------------------------------------------------
Q 005587          580 GQRLLIYEYCSNGTLQDMLHSDDEL-------------------------------------------------------  604 (689)
Q Consensus       580 ~~~~lV~Ey~~ggsL~~~l~~~~~~-------------------------------------------------------  604 (689)
                      +..++||||+++|+|.+++......                                                       
T Consensus        85 ~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (338)
T cd05102          85 GPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETD  164 (338)
T ss_pred             CceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhcc
Confidence            4689999999999999999753210                                                       


Q ss_pred             ---CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCcce---eecccce
Q 005587          605 ---KNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQ---VSHNLTI  678 (689)
Q Consensus       605 ---~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~---~~~~~~~  678 (689)
                         ...+++..+..++.||++||+|||+.   +|+||||||+|||++.++.+||+|||+++.+.......   ...++..
T Consensus       165 ~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~  241 (338)
T cd05102         165 DLWKSPLTMEDLICYSFQVARGMEFLASR---KCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLK  241 (338)
T ss_pred             ccccCCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCCcc
Confidence               23588889999999999999999987   89999999999999999999999999998764432211   1223357


Q ss_pred             EEeccccc
Q 005587          679 MRAGGVTH  686 (689)
Q Consensus       679 ~~apE~~~  686 (689)
                      |+|||++.
T Consensus       242 y~aPE~~~  249 (338)
T cd05102         242 WMAPESIF  249 (338)
T ss_pred             ccCcHHhh
Confidence            99999874

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.94  E-value=1.7e-26  Score=251.05  Aligned_cols=148  Identities=20%  Similarity=0.284  Sum_probs=130.4

Q ss_pred             CCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccC-ChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          510 SFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      +|++.+.||+|+||.||+|+. .+++.||||++.+... .......+.+|++++++++||||+++++.+...+..|+|||
T Consensus         2 ~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E   81 (376)
T cd05598           2 MFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD   81 (376)
T ss_pred             CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEEe
Confidence            688899999999999999965 4689999999865422 12234567889999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccc
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI  664 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~  664 (689)
                      |+++|+|.+++...    ..+++..+..++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+|..+
T Consensus        82 ~~~~g~L~~~i~~~----~~~~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~Nill~~~~~ikL~DFG~a~~~  151 (376)
T cd05598          82 YIPGGDMMSLLIRL----GIFEEDLARFYIAELTCAIESVHKM---GFIHRDIKPDNILIDRDGHIKLTDFGLCTGF  151 (376)
T ss_pred             CCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCCHHHEEECCCCCEEEEeCCCCccc
Confidence            99999999999753    3578888999999999999999987   8999999999999999999999999998643

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.94  E-value=2.2e-26  Score=245.40  Aligned_cols=165  Identities=24%  Similarity=0.285  Sum_probs=140.8

Q ss_pred             ceEeecCCeEEEEEEe-CCCcEEEEEEeccccC-ChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccCCC
Q 005587          515 NLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNG  592 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~gg  592 (689)
                      +.||+|+||.||+++. .+|+.||||++..... .......+.+|+++++.++||||+++++++...+..++||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g   80 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGG   80 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCC
Confidence            3689999999999965 4689999999975432 2234567888999999999999999999999999999999999999


Q ss_pred             CHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC-Ccce
Q 005587          593 TLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG-SVSQ  671 (689)
Q Consensus       593 sL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~-~~~~  671 (689)
                      +|.+++..    ...+++..+..++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+++..... ....
T Consensus        81 ~L~~~l~~----~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~  153 (328)
T cd05593          81 ELFFHLSR----ERVFSEDRTRFYGAEIVSALDYLHSG---KIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAATMK  153 (328)
T ss_pred             CHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeEECCCCcEEEecCcCCccCCCcccccc
Confidence            99998865    34688999999999999999999987   8999999999999999999999999999864332 2222


Q ss_pred             eecccceEEeccccc
Q 005587          672 VSHNLTIMRAGGVTH  686 (689)
Q Consensus       672 ~~~~~~~~~apE~~~  686 (689)
                      ...++..|+|||++.
T Consensus       154 ~~~gt~~y~aPE~~~  168 (328)
T cd05593         154 TFCGTPEYLAPEVLE  168 (328)
T ss_pred             cccCCcCccChhhhc
Confidence            345788999999974

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.94  E-value=9.4e-27  Score=249.16  Aligned_cols=174  Identities=25%  Similarity=0.339  Sum_probs=159.1

Q ss_pred             hhccCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEE
Q 005587          506 QYTNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLL  584 (689)
Q Consensus       506 ~~~~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~l  584 (689)
                      .-...|.+...||+|.|+.|..|+. .++..||||.+.+..........+.+|+++|..++|||||+++.+.+....+|+
T Consensus        53 ~~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~lyl  132 (596)
T KOG0586|consen   53 NSVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEATLYL  132 (596)
T ss_pred             ccccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecceeEE
Confidence            3456789999999999999999965 479999999999887766666678999999999999999999999999999999


Q ss_pred             EEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccc
Q 005587          585 IYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI  664 (689)
Q Consensus       585 V~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~  664 (689)
                      ||||+.+|.+++++...+    ...+..+..+..|+.+|++|||+.   .|+|||||++||||+.+.++||+|||++.++
T Consensus       133 V~eya~~ge~~~yl~~~g----r~~e~~ar~~F~q~vsaveYcH~k---~ivHrdLk~eNilL~~~mnikIaDfgfS~~~  205 (596)
T KOG0586|consen  133 VMEYASGGELFDYLVKHG----RMKEKEARAKFRQIVSAVEYCHSK---NIVHRDLKAENILLDENMNIKIADFGFSTFF  205 (596)
T ss_pred             EEEeccCchhHHHHHhcc----cchhhhhhhhhHHHHHHHHHHhhc---ceeccccchhhcccccccceeeeccccceee
Confidence            999999999999998754    344578888999999999999998   7999999999999999999999999999999


Q ss_pred             cCCCcceeecccceEEeccccc
Q 005587          665 SSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       665 ~~~~~~~~~~~~~~~~apE~~~  686 (689)
                      ..+...+..++++.|.|||++.
T Consensus       206 ~~~~~lqt~cgsppyAaPEl~~  227 (596)
T KOG0586|consen  206 DYGLMLQTFCGSPPYAAPELFN  227 (596)
T ss_pred             cccccccccCCCCCccChHhhc
Confidence            9999999999999999999984

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.94  E-value=1.9e-26  Score=251.30  Aligned_cols=148  Identities=20%  Similarity=0.282  Sum_probs=130.5

Q ss_pred             CCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccC-ChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          510 SFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      .|+..+.||+|+||.||+|+. .+++.||+|++.+... .......+.+|++++++++|||||++++++.+.+..|+|||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E   81 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMD   81 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEe
Confidence            578889999999999999965 4688999999875432 12335678899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccc
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI  664 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~  664 (689)
                      ||++|+|.+++...    ..+++..+..++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+|+.+
T Consensus        82 ~~~gg~L~~~l~~~----~~~~e~~~~~~~~qi~~al~~lH~~---~ivHrDlKp~NILl~~~g~~kL~DFGla~~~  151 (382)
T cd05625          82 YIPGGDMMSLLIRM----GIFPEDLARFYIAELTCAVESVHKM---GFIHRDIKPDNILIDRDGHIKLTDFGLCTGF  151 (382)
T ss_pred             CCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEEeECCCCccc
Confidence            99999999998753    3578889999999999999999987   8999999999999999999999999998643

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.94  E-value=1.7e-26  Score=245.66  Aligned_cols=165  Identities=24%  Similarity=0.286  Sum_probs=140.4

Q ss_pred             ceEeecCCeEEEEEEe-CCCcEEEEEEeccccC-ChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccCCC
Q 005587          515 NLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNG  592 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~gg  592 (689)
                      +.||+|+||.||+++. .+|+.||+|++..... .......+.+|+++++.++||||+++++++...+..|+||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCC
Confidence            4699999999999965 4689999999875432 2234456778999999999999999999999999999999999999


Q ss_pred             CHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC-cce
Q 005587          593 TLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS-VSQ  671 (689)
Q Consensus       593 sL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~-~~~  671 (689)
                      +|.+++..    ...+++..+..++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+++...... ...
T Consensus        81 ~L~~~l~~----~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~  153 (323)
T cd05595          81 ELFFHLSR----ERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMK  153 (323)
T ss_pred             cHHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHEEEcCCCCEEecccHHhccccCCCCccc
Confidence            99998875    34688999999999999999999987   89999999999999999999999999998643322 223


Q ss_pred             eecccceEEeccccc
Q 005587          672 VSHNLTIMRAGGVTH  686 (689)
Q Consensus       672 ~~~~~~~~~apE~~~  686 (689)
                      ...++..|+|||++.
T Consensus       154 ~~~gt~~y~aPE~~~  168 (323)
T cd05595         154 TFCGTPEYLAPEVLE  168 (323)
T ss_pred             cccCCcCcCCccccc
Confidence            345778899999984

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.94  E-value=1.6e-26  Score=250.65  Aligned_cols=172  Identities=19%  Similarity=0.255  Sum_probs=146.2

Q ss_pred             hccCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccC-ChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEE
Q 005587          507 YTNSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLL  584 (689)
Q Consensus       507 ~~~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~l  584 (689)
                      ..++|++.+.||+|+||.||+|+.. +++.||+|++.+... .......+.+|+.+++.++||||+++++++...+..|+
T Consensus        41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~~l  120 (370)
T cd05596          41 KAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLYM  120 (370)
T ss_pred             CHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEE
Confidence            3467899999999999999999764 688999999865322 12334557889999999999999999999999999999


Q ss_pred             EEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccc
Q 005587          585 IYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI  664 (689)
Q Consensus       585 V~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~  664 (689)
                      ||||++||+|.+++..     ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.+
T Consensus       121 v~Ey~~gg~L~~~l~~-----~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~kL~DfG~~~~~  192 (370)
T cd05596         121 VMEYMPGGDLVNLMSN-----YDIPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADFGTCMKM  192 (370)
T ss_pred             EEcCCCCCcHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEcCCCCEEEEeccceeec
Confidence            9999999999999874     2478888999999999999999987   8999999999999999999999999999877


Q ss_pred             cCCCc--ceeecccceEEeccccc
Q 005587          665 SSGSV--SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       665 ~~~~~--~~~~~~~~~~~apE~~~  686 (689)
                      .....  .....++..|+|||++.
T Consensus       193 ~~~~~~~~~~~~gt~~y~aPE~~~  216 (370)
T cd05596         193 DANGMVRCDTAVGTPDYISPEVLK  216 (370)
T ss_pred             cCCCcccCCCCCCCcCeECHHHhc
Confidence            54322  12345788899999874

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.94  E-value=2e-26  Score=249.92  Aligned_cols=176  Identities=18%  Similarity=0.238  Sum_probs=148.8

Q ss_pred             hHhhhccCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccC-ChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCC
Q 005587          503 SLQQYTNSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHG  580 (689)
Q Consensus       503 ~l~~~~~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~  580 (689)
                      ++....++|++.+.||+|+||.||+|+.. +++.||+|++.+... .......+.+|+.+++.++||||+++++++...+
T Consensus        37 ~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~  116 (371)
T cd05622          37 DLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDR  116 (371)
T ss_pred             hcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCC
Confidence            33444578999999999999999999765 688999999865322 2233456788999999999999999999999999


Q ss_pred             eEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecC
Q 005587          581 QRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGL  660 (689)
Q Consensus       581 ~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGl  660 (689)
                      ..|+||||++||+|.+++..     ..+++..+..++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+
T Consensus       117 ~~~lv~Ey~~gg~L~~~~~~-----~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDLkp~NIll~~~~~ikL~DfG~  188 (371)
T cd05622         117 YLYMVMEYMPGGDLVNLMSN-----YDVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADFGT  188 (371)
T ss_pred             EEEEEEcCCCCCcHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHC---CEEeCCCCHHHEEECCCCCEEEEeCCc
Confidence            99999999999999999874     3478888999999999999999987   899999999999999999999999999


Q ss_pred             CccccCCCc--ceeecccceEEeccccc
Q 005587          661 APLISSGSV--SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       661 a~~~~~~~~--~~~~~~~~~~~apE~~~  686 (689)
                      ++.+.....  .....++..|+|||++.
T Consensus       189 a~~~~~~~~~~~~~~~gt~~y~aPE~l~  216 (371)
T cd05622         189 CMKMNKEGMVRCDTAVGTPDYISPEVLK  216 (371)
T ss_pred             eeEcCcCCcccccCcccCccccCHHHHh
Confidence            987754332  12345788899999974

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.94  E-value=3.6e-26  Score=243.48  Aligned_cols=166  Identities=24%  Similarity=0.298  Sum_probs=140.1

Q ss_pred             ceEeecCCeEEEEEEe-CCCcEEEEEEeccccC-ChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccCCC
Q 005587          515 NLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNG  592 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~gg  592 (689)
                      +.||+|+||.||++.. .+|+.||+|++..... .......+..|++++..++||||+++++++...+..|+||||+++|
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCC
Confidence            4699999999999965 5789999999975432 2233456778999999999999999999999999999999999999


Q ss_pred             CHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC-CCcce
Q 005587          593 TLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS-GSVSQ  671 (689)
Q Consensus       593 sL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~-~~~~~  671 (689)
                      +|.+++..    ...+++..+..++.||+.||.|||+.  .+|+||||||+|||++.++.+||+|||+++.... .....
T Consensus        81 ~L~~~l~~----~~~l~~~~~~~~~~qi~~aL~~lH~~--~~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~  154 (325)
T cd05594          81 ELFFHLSR----ERVFSEDRARFYGAEIVSALDYLHSE--KNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMK  154 (325)
T ss_pred             cHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHhc--CCEEecCCCCCeEEECCCCCEEEecCCCCeecCCCCcccc
Confidence            99998865    34689999999999999999999972  2899999999999999999999999999986432 22233


Q ss_pred             eecccceEEeccccc
Q 005587          672 VSHNLTIMRAGGVTH  686 (689)
Q Consensus       672 ~~~~~~~~~apE~~~  686 (689)
                      ...++..|+|||++.
T Consensus       155 ~~~gt~~y~aPE~~~  169 (325)
T cd05594         155 TFCGTPEYLAPEVLE  169 (325)
T ss_pred             cccCCcccCCHHHHc
Confidence            345788999999974

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=1.5e-26  Score=248.74  Aligned_cols=171  Identities=22%  Similarity=0.287  Sum_probs=148.4

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCCh-hhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQ-QKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~-~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      ++|.+.+.||+|+||.||+|+.. +|+.||||++....... .....+.+|++++..++||||+++++++.+.+..++||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (350)
T cd05573           1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVM   80 (350)
T ss_pred             CCceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEE
Confidence            36888999999999999999765 68999999987543222 34567889999999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      ||+++|+|.+++...    ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.+..
T Consensus        81 e~~~~~~L~~~l~~~----~~l~~~~~~~i~~qi~~aL~~LH~~---giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~  153 (350)
T cd05573          81 EYMPGGDLMNLLIRK----DVFPEETARFYIAELVLALDSVHKL---GFIHRDIKPDNILIDADGHIKLADFGLCKKMNK  153 (350)
T ss_pred             cCCCCCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEeecCCCCccCcc
Confidence            999999999999763    4688999999999999999999997   899999999999999999999999999987765


Q ss_pred             CC------------------------------cceeecccceEEeccccc
Q 005587          667 GS------------------------------VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 ~~------------------------------~~~~~~~~~~~~apE~~~  686 (689)
                      ..                              ......++..|+|||++.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~  203 (350)
T cd05573         154 AKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLR  203 (350)
T ss_pred             cCcccccccccccccccccccccccccccccccccccccCccccCHHHHc
Confidence            43                              223345788899999874

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.94  E-value=3.2e-26  Score=241.35  Aligned_cols=174  Identities=25%  Similarity=0.417  Sum_probs=143.4

Q ss_pred             cCCCccceEeecCCeEEEEEEeCC-----------------CcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcce
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPD-----------------GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE  571 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~~-----------------g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~  571 (689)
                      ++|.+.+.||+|+||.||+|.+.+                 +..||+|.+.... ......+|.+|++++.+++||||++
T Consensus         5 ~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~   83 (304)
T cd05096           5 GHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDA-NKNARNDFLKEVKILSRLKDPNIIR   83 (304)
T ss_pred             hhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCC-CHHHHHHHHHHHHHHhhcCCCCeeE
Confidence            468888999999999999997532                 3479999986543 2344567999999999999999999


Q ss_pred             ecEEEEeCCeEEEEEeccCCCCHHHHHhcCcc---------------cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcE
Q 005587          572 LKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDE---------------LKNNLSWNTRIRMALGAARALEYLHEICQPPIV  636 (689)
Q Consensus       572 l~~~~~~~~~~~lV~Ey~~ggsL~~~l~~~~~---------------~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~ii  636 (689)
                      +++++...+..++||||+++|+|.+++.....               ....++|..+.+++.|++.||.|||+.   +|+
T Consensus        84 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~iv  160 (304)
T cd05096          84 LLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSL---NFV  160 (304)
T ss_pred             EEEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHC---Ccc
Confidence            99999999999999999999999999865321               113578899999999999999999987   899


Q ss_pred             EecccCCCeEecCCCcEEEEeecCCccccCCCcce---eecccceEEeccccc
Q 005587          637 HRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQ---VSHNLTIMRAGGVTH  686 (689)
Q Consensus       637 HrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~---~~~~~~~~~apE~~~  686 (689)
                      ||||||+|||+++++.+||+|||+++.+..+....   ....+..|+|||++.
T Consensus       161 H~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  213 (304)
T cd05096         161 HRDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECIL  213 (304)
T ss_pred             ccCcchhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHHh
Confidence            99999999999999999999999998775543221   122245699999864

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.94  E-value=2.9e-26  Score=243.39  Aligned_cols=165  Identities=23%  Similarity=0.272  Sum_probs=141.5

Q ss_pred             ceEeecCCeEEEEEEe----CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccC
Q 005587          515 NLIGAGMLGSVYRAQL----PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCS  590 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~----~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~  590 (689)
                      +.||+|+||.||+++.    .+|+.||+|++............+.+|++++++++||||+++++++...+..|+||||++
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~   81 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLR   81 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCCC
Confidence            5799999999999864    358899999997654333344567789999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC-c
Q 005587          591 NGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS-V  669 (689)
Q Consensus       591 ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~-~  669 (689)
                      +|+|.+++..    ...+++..+..++.||++||.|||+.   +|+||||||+|||+++++.+||+|||+++...... .
T Consensus        82 ~~~L~~~l~~----~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~  154 (318)
T cd05582          82 GGDLFTRLSK----EVMFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKK  154 (318)
T ss_pred             CCcHHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHeEECCCCcEEEeeccCCcccCCCCCc
Confidence            9999999865    34689999999999999999999987   89999999999999999999999999998765442 2


Q ss_pred             ceeecccceEEeccccc
Q 005587          670 SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       670 ~~~~~~~~~~~apE~~~  686 (689)
                      .....++..|+|||++.
T Consensus       155 ~~~~~g~~~y~aPE~~~  171 (318)
T cd05582         155 AYSFCGTVEYMAPEVVN  171 (318)
T ss_pred             eecccCChhhcCHHHHc
Confidence            23345678899999874

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.94  E-value=3.2e-26  Score=244.33  Aligned_cols=172  Identities=20%  Similarity=0.280  Sum_probs=147.7

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccC-ChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      ++|++.+.||+|+||.||+|+.. +|+.||||++..... .......+.+|+.+++.++|+||+++++++...+..++||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (330)
T cd05601           1 KDFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVM   80 (330)
T ss_pred             CCceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEE
Confidence            46888999999999999999654 689999999976432 2234566888999999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      ||+++|+|.+++...   ...+++..+..++.|+++||+|||+.   +|+||||||+|||++.++.+||+|||+++.+..
T Consensus        81 e~~~~~~L~~~l~~~---~~~l~~~~~~~~~~qi~~aL~~lH~~---~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~  154 (330)
T cd05601          81 EYQPGGDLLSLLNRY---EDQFDEDMAQFYLAELVLAIHSVHQM---GYVHRDIKPENVLIDRTGHIKLADFGSAARLTA  154 (330)
T ss_pred             CCCCCCCHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEcccCchHheEECCCCCEEeccCCCCeECCC
Confidence            999999999999763   24689999999999999999999997   899999999999999999999999999988755


Q ss_pred             CCcc--eeecccceEEeccccc
Q 005587          667 GSVS--QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 ~~~~--~~~~~~~~~~apE~~~  686 (689)
                      ....  ....++..|+|||++.
T Consensus       155 ~~~~~~~~~~gt~~y~aPE~~~  176 (330)
T cd05601         155 NKMVNSKLPVGTPDYIAPEVLT  176 (330)
T ss_pred             CCceeeecccCCccccCHHHhc
Confidence            4322  2235778899999874

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.94  E-value=3.2e-26  Score=247.43  Aligned_cols=150  Identities=24%  Similarity=0.336  Sum_probs=132.3

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccC-ChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      ++|+..+.||+|+||.||+|+.. +++.||||++..... .......+.+|+.++..++||||+++++++...+..|+||
T Consensus         1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~   80 (360)
T cd05627           1 DDFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIM   80 (360)
T ss_pred             CCceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            36888899999999999999654 689999999875322 1233456788999999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcccc
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS  665 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~  665 (689)
                      ||++||+|.+++..    ...+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.+.
T Consensus        81 E~~~gg~L~~~l~~----~~~l~~~~~~~~~~qi~~~L~~lH~~---givHrDLkp~NIli~~~~~vkL~DfG~~~~~~  152 (360)
T cd05627          81 EFLPGGDMMTLLMK----KDTLSEEATQFYIAETVLAIDAIHQL---GFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLK  152 (360)
T ss_pred             eCCCCccHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEccCCCHHHEEECCCCCEEEeeccCCcccc
Confidence            99999999999975    34588999999999999999999987   89999999999999999999999999998654

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=3.1e-26  Score=242.53  Aligned_cols=163  Identities=21%  Similarity=0.255  Sum_probs=139.4

Q ss_pred             EeecCCeEEEEEEeC-CCcEEEEEEecccc-CChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccCCCCH
Q 005587          517 IGAGMLGSVYRAQLP-DGKLLAVKKLDKRA-SSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTL  594 (689)
Q Consensus       517 iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~ggsL  594 (689)
                      ||+|+||.||+|+.. +++.||+|++.... ........+.+|++++.+++||||+++++++...+..|+||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L   80 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGEL   80 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcH
Confidence            699999999999764 68899999986542 1233456788899999999999999999999999999999999999999


Q ss_pred             HHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC-cceee
Q 005587          595 QDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS-VSQVS  673 (689)
Q Consensus       595 ~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~-~~~~~  673 (689)
                      .+++..    ...+++..+..++.|+++||.|||+.   +|+||||||+|||++.++.+||+|||+++...... .....
T Consensus        81 ~~~l~~----~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~  153 (312)
T cd05585          81 FHHLQR----EGRFDLSRARFYTAELLCALENLHKF---NVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDDKTNTF  153 (312)
T ss_pred             HHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHhC---CeEeCCCCHHHeEECCCCcEEEEECcccccCccCCCccccc
Confidence            999975    34588999999999999999999987   89999999999999999999999999998653322 22334


Q ss_pred             cccceEEeccccc
Q 005587          674 HNLTIMRAGGVTH  686 (689)
Q Consensus       674 ~~~~~~~apE~~~  686 (689)
                      .++..|+|||++.
T Consensus       154 ~gt~~y~aPE~~~  166 (312)
T cd05585         154 CGTPEYLAPELLL  166 (312)
T ss_pred             cCCcccCCHHHHc
Confidence            5788899999874

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=3.5e-26  Score=244.23  Aligned_cols=172  Identities=20%  Similarity=0.272  Sum_probs=146.2

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccC-ChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      ++|++.+.||+|+||.||+++.. +++.||||++.+... .......+.+|+.++..++|+||+++++++...+..|+||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVM   80 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEE
Confidence            46888999999999999999754 689999999875321 2233456888999999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      ||++||+|.+++...   ...+++..+..++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+++.+..
T Consensus        81 e~~~g~~L~~~l~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~  154 (331)
T cd05597          81 DYYVGGDLLTLLSKF---EDRLPEDMARFYLAEMVLAIDSVHQL---GYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLA  154 (331)
T ss_pred             ecCCCCcHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHhC---CeEECCCCHHHEEECCCCCEEEEECCceeecCC
Confidence            999999999999652   24588999999999999999999987   899999999999999999999999999987654


Q ss_pred             CCcc--eeecccceEEeccccc
Q 005587          667 GSVS--QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 ~~~~--~~~~~~~~~~apE~~~  686 (689)
                      ....  ....++..|+|||++.
T Consensus       155 ~~~~~~~~~~gt~~y~aPE~~~  176 (331)
T cd05597         155 DGTVQSNVAVGTPDYISPEILQ  176 (331)
T ss_pred             CCCccccceeccccccCHHHHh
Confidence            3322  2245788899999874

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.94  E-value=4.4e-26  Score=243.43  Aligned_cols=172  Identities=20%  Similarity=0.251  Sum_probs=146.2

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccC-ChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      ++|.+.+.||+|+||.||+++.. +++.||+|++.+... .......+.+|..++..++|+||+++++++...+..|+||
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~   80 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVM   80 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            46888999999999999999765 688999999865321 2233455788999999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      ||++||+|.+++...   ...+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.+..
T Consensus        81 Ey~~gg~L~~~l~~~---~~~l~~~~~~~~~~qi~~~L~~lH~~---~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~  154 (331)
T cd05624          81 DYYVGGDLLTLLSKF---EDRLPEDMARFYIAEMVLAIHSIHQL---HYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQ  154 (331)
T ss_pred             eCCCCCcHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCchHHEEEcCCCCEEEEeccceeeccC
Confidence            999999999999753   23588999999999999999999987   899999999999999999999999999987754


Q ss_pred             CCcc--eeecccceEEeccccc
Q 005587          667 GSVS--QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 ~~~~--~~~~~~~~~~apE~~~  686 (689)
                      ....  ....++..|+|||++.
T Consensus       155 ~~~~~~~~~~gt~~y~aPE~~~  176 (331)
T cd05624         155 DGTVQSSVAVGTPDYISPEILQ  176 (331)
T ss_pred             CCceeeccccCCcccCCHHHHh
Confidence            4322  2235788899999874

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.94  E-value=2.1e-26  Score=247.68  Aligned_cols=175  Identities=25%  Similarity=0.407  Sum_probs=143.9

Q ss_pred             hhccCCCccceEeecCCeEEEEEEeCC--C--cE-EEEEEecc-ccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeC
Q 005587          506 QYTNSFSQENLIGAGMLGSVYRAQLPD--G--KL-LAVKKLDK-RASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEH  579 (689)
Q Consensus       506 ~~~~~f~~~~~iG~G~~G~Vy~~~~~~--g--~~-vAvK~l~~-~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~  579 (689)
                      ...++-...++||+|+||.||+|+++.  +  .. ||||.... .........+|.+|.++|++++|||||++||++...
T Consensus       154 l~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~  233 (474)
T KOG0194|consen  154 LSHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLE  233 (474)
T ss_pred             EeccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCC
Confidence            334455566899999999999997643  3  23 89999875 334566778999999999999999999999999999


Q ss_pred             CeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeec
Q 005587          580 GQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCG  659 (689)
Q Consensus       580 ~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG  659 (689)
                      ..+++|||+|.||+|.++|+...   ..++..+.++++.+.|.||+|||+.   ++|||||-.+|+|++.++.+||+|||
T Consensus       234 ~Pl~ivmEl~~gGsL~~~L~k~~---~~v~~~ek~~~~~~AA~Gl~YLh~k---~~IHRDIAARNcL~~~~~~vKISDFG  307 (474)
T KOG0194|consen  234 EPLMLVMELCNGGSLDDYLKKNK---KSLPTLEKLRFCYDAARGLEYLHSK---NCIHRDIAARNCLYSKKGVVKISDFG  307 (474)
T ss_pred             CccEEEEEecCCCcHHHHHHhCC---CCCCHHHHHHHHHHHHhHHHHHHHC---CCcchhHhHHHheecCCCeEEeCccc
Confidence            99999999999999999998753   2689999999999999999999997   89999999999999999999999999


Q ss_pred             CCccccCCCcceeeccc-ceEEeccccc
Q 005587          660 LAPLISSGSVSQVSHNL-TIMRAGGVTH  686 (689)
Q Consensus       660 la~~~~~~~~~~~~~~~-~~~~apE~~~  686 (689)
                      |++.-..-......... .-|+|||.+.
T Consensus       308 Ls~~~~~~~~~~~~~klPirWLAPEtl~  335 (474)
T KOG0194|consen  308 LSRAGSQYVMKKFLKKLPIRWLAPETLN  335 (474)
T ss_pred             cccCCcceeeccccccCcceecChhhhc
Confidence            98875421111101112 3489999874

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.94  E-value=5.7e-26  Score=242.60  Aligned_cols=170  Identities=26%  Similarity=0.294  Sum_probs=143.6

Q ss_pred             CCCccceEeecCCeEEEEEEe----CCCcEEEEEEeccccC--ChhhHHHHHHHHHHHhcC-CCCCcceecEEEEeCCeE
Q 005587          510 SFSQENLIGAGMLGSVYRAQL----PDGKLLAVKKLDKRAS--SQQKDDEFLELVNNIDRI-RHANIVELKGYCAEHGQR  582 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~----~~g~~vAvK~l~~~~~--~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~~~~~  582 (689)
                      +|++.+.||+|+||.||+++.    .+++.||+|++.+...  .....+.+..|++++..+ +||||+++++++...+..
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKL   80 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEE
Confidence            477889999999999999965    3588999999865321  122345678899999999 599999999999999999


Q ss_pred             EEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCc
Q 005587          583 LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAP  662 (689)
Q Consensus       583 ~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~  662 (689)
                      ++||||+++|+|.+++..    ...+++..+..++.||+.||.|||+.   +|+||||||+|||++.++.+||+|||+++
T Consensus        81 ~lv~e~~~~g~L~~~l~~----~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivHrDlkp~Nili~~~~~~kl~DfG~~~  153 (332)
T cd05614          81 HLILDYVSGGEMFTHLYQ----RDNFSEDEVRFYSGEIILALEHLHKL---GIVYRDIKLENILLDSEGHVVLTDFGLSK  153 (332)
T ss_pred             EEEEeCCCCCcHHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHHC---CcEecCCCHHHeEECCCCCEEEeeCcCCc
Confidence            999999999999999875    34688999999999999999999987   89999999999999999999999999998


Q ss_pred             cccCCCc--ceeecccceEEeccccc
Q 005587          663 LISSGSV--SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       663 ~~~~~~~--~~~~~~~~~~~apE~~~  686 (689)
                      .+.....  .....++..|+|||++.
T Consensus       154 ~~~~~~~~~~~~~~gt~~y~aPE~~~  179 (332)
T cd05614         154 EFLSEEKERTYSFCGTIEYMAPEIIR  179 (332)
T ss_pred             cccccCCCccccccCCccccCHHHhc
Confidence            7644332  22345788999999874

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.94  E-value=6.1e-26  Score=241.47  Aligned_cols=165  Identities=28%  Similarity=0.332  Sum_probs=139.1

Q ss_pred             ceEeecCCeEEEEEEe----CCCcEEEEEEeccccC--ChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          515 NLIGAGMLGSVYRAQL----PDGKLLAVKKLDKRAS--SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~----~~g~~vAvK~l~~~~~--~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      +.||+|+||.||+++.    .+++.||||++.....  .......+..|+++++.++||||+++++++...+..|+||||
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~   81 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEY   81 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeC
Confidence            5799999999999965    3578999999875422  122345677899999999999999999999999999999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC-C
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS-G  667 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~-~  667 (689)
                      +++|+|.+++...    ..+.+..+..++.|+++||+|||+.   +|+||||||+|||++.++.+||+|||+++.... .
T Consensus        82 ~~~~~L~~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  154 (323)
T cd05584          82 LSGGELFMHLERE----GIFMEDTACFYLSEISLALEHLHQQ---GIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEG  154 (323)
T ss_pred             CCCchHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCCEEEeeCcCCeecccCC
Confidence            9999999998753    3578888999999999999999987   899999999999999999999999999985433 2


Q ss_pred             CcceeecccceEEeccccc
Q 005587          668 SVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~~~~~~~~~~~~apE~~~  686 (689)
                      .......++..|+|||++.
T Consensus       155 ~~~~~~~gt~~y~aPE~~~  173 (323)
T cd05584         155 TVTHTFCGTIEYMAPEILM  173 (323)
T ss_pred             CcccccCCCccccChhhcc
Confidence            2233345778899999874

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.94  E-value=1.6e-26  Score=257.44  Aligned_cols=172  Identities=23%  Similarity=0.354  Sum_probs=143.6

Q ss_pred             CCCccceEeecCCeEEEEEEeCCC-cEEEEEEeccccCChhhHHHHHHHHHHHhcCC-CCCcceecE-EEEeC------C
Q 005587          510 SFSQENLIGAGMLGSVYRAQLPDG-KLLAVKKLDKRASSQQKDDEFLELVNNIDRIR-HANIVELKG-YCAEH------G  580 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~~g-~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~-HpnIv~l~~-~~~~~------~  580 (689)
                      ++.+.+.|.+|+|+.||.|+...+ ..||+|++-..  +....+.+.+|+++|++|+ |+|||.+++ .....      -
T Consensus        38 ~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~--de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~  115 (738)
T KOG1989|consen   38 RVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVN--DEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVW  115 (738)
T ss_pred             EEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecC--CHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCcee
Confidence            456788999999999999987665 99999998655  4567788999999999997 999999999 33321      2


Q ss_pred             eEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecC
Q 005587          581 QRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGL  660 (689)
Q Consensus       581 ~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGl  660 (689)
                      +++|.||||.||+|-|++..+.  ...|++.++++|+.++++|+.+||.. +++|||||||.+||||+.+|..||||||-
T Consensus       116 EvllLmEyC~gg~Lvd~mn~Rl--q~~lte~eVLkIf~dv~~AVa~mH~~-~pPiIHRDLKiENvLls~~g~~KLCDFGS  192 (738)
T KOG1989|consen  116 EVLLLMEYCKGGSLVDFMNTRL--QTRLTEDEVLKIFYDVCEAVAAMHYL-KPPIIHRDLKIENVLLSADGNYKLCDFGS  192 (738)
T ss_pred             EEEeehhhccCCcHHHHHHHHH--hccCChHHHHHHHHHHHHHHHHHhcC-CCccchhhhhhhheEEcCCCCEEeCcccc
Confidence            6789999999999999998643  34599999999999999999999987 67899999999999999999999999998


Q ss_pred             CccccCCC----------cceeecccceEEeccccc
Q 005587          661 APLISSGS----------VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       661 a~~~~~~~----------~~~~~~~~~~~~apE~~~  686 (689)
                      |.-.-...          ......+|..|||||++.
T Consensus       193 att~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMID  228 (738)
T KOG1989|consen  193 ATTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMID  228 (738)
T ss_pred             cccccCCCccHHHHHHHHHHHHhhCCccccChHHHh
Confidence            86432222          112356788899999983

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.93  E-value=3.7e-27  Score=247.48  Aligned_cols=159  Identities=27%  Similarity=0.452  Sum_probs=143.5

Q ss_pred             ccceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccCCC
Q 005587          513 QENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNG  592 (689)
Q Consensus       513 ~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~gg  592 (689)
                      ..+.||.|+-|.||+|+++ ++.||||+++...         ..+++.|++|+|||||.+.|+|.....++||||||..|
T Consensus       128 ELeWlGSGaQGAVF~Grl~-netVAVKKV~elk---------ETdIKHLRkLkH~NII~FkGVCtqsPcyCIiMEfCa~G  197 (904)
T KOG4721|consen  128 ELEWLGSGAQGAVFLGRLH-NETVAVKKVRELK---------ETDIKHLRKLKHPNIITFKGVCTQSPCYCIIMEFCAQG  197 (904)
T ss_pred             hhhhhccCcccceeeeecc-CceehhHHHhhhh---------hhhHHHHHhccCcceeeEeeeecCCceeEEeeeccccc
Confidence            3578999999999999984 5789999985422         24688999999999999999999999999999999999


Q ss_pred             CHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCccee
Q 005587          593 TLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQV  672 (689)
Q Consensus       593 sL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~~  672 (689)
                      .|+.+|+.    ...+.....+.|..+||.||.|||..   .|||||||.-||||..+-.+||+|||-++.+.+.++...
T Consensus       198 qL~~VLka----~~~itp~llv~Wsk~IA~GM~YLH~h---KIIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~STkMS  270 (904)
T KOG4721|consen  198 QLYEVLKA----GRPITPSLLVDWSKGIAGGMNYLHLH---KIIHRDLKSPNILISYDDVVKISDFGTSKELSDKSTKMS  270 (904)
T ss_pred             cHHHHHhc----cCccCHHHHHHHHHHhhhhhHHHHHh---hHhhhccCCCceEeeccceEEeccccchHhhhhhhhhhh
Confidence            99999987    35677788899999999999999987   799999999999999999999999999999998888888


Q ss_pred             ecccceEEeccccccC
Q 005587          673 SHNLTIMRAGGVTHRN  688 (689)
Q Consensus       673 ~~~~~~~~apE~~~~~  688 (689)
                      -.+|-.|||||+|+.+
T Consensus       271 FaGTVaWMAPEvIrne  286 (904)
T KOG4721|consen  271 FAGTVAWMAPEVIRNE  286 (904)
T ss_pred             hhhhHhhhCHHHhhcC
Confidence            8899999999999754

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.93  E-value=6.7e-26  Score=236.58  Aligned_cols=171  Identities=22%  Similarity=0.362  Sum_probs=144.9

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      ++|++.+.||+|+||.||+|+.. +++.||||++..........+.+.+|++++++++||||+++++++...+..++|||
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (287)
T cd07848           1 NKFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFE   80 (287)
T ss_pred             CCceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEe
Confidence            36888999999999999999765 68899999987654434445678899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |++++.+..+...    ...+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++.+...
T Consensus        81 ~~~~~~l~~~~~~----~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~  153 (287)
T cd07848          81 YVEKNMLELLEEM----PNGVPPEKVRSYIYQLIKAIHWCHKN---DIVHRDIKPENLLISHNDVLKLCDFGFARNLSEG  153 (287)
T ss_pred             cCCCCHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCcEEEeeccCccccccc
Confidence            9998877655432    34688999999999999999999987   8999999999999999999999999999987543


Q ss_pred             Ccc--eeecccceEEeccccc
Q 005587          668 SVS--QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~~--~~~~~~~~~~apE~~~  686 (689)
                      ...  ....++..|+|||++.
T Consensus       154 ~~~~~~~~~~~~~y~aPE~~~  174 (287)
T cd07848         154 SNANYTEYVATRWYRSPELLL  174 (287)
T ss_pred             ccccccccccccccCCcHHHc
Confidence            321  2235678899999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.93  E-value=9.3e-26  Score=240.71  Aligned_cols=165  Identities=20%  Similarity=0.273  Sum_probs=140.1

Q ss_pred             ceEeecCCeEEEEEEeC-CCcEEEEEEeccccCC-hhhHHHHHHHHHHHhcC-CCCCcceecEEEEeCCeEEEEEeccCC
Q 005587          515 NLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASS-QQKDDEFLELVNNIDRI-RHANIVELKGYCAEHGQRLLIYEYCSN  591 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~~~~~~lV~Ey~~g  591 (689)
                      ++||+|+||.||+|+.. +++.||||++...... ......+.+|..++.++ +||||+++++++...+..|+||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~   80 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSG   80 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence            46999999999999654 6899999999764322 23345678899999888 799999999999999999999999999


Q ss_pred             CCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccc-cCCCcc
Q 005587          592 GTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI-SSGSVS  670 (689)
Q Consensus       592 gsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~-~~~~~~  670 (689)
                      |+|.+++..    ...+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.. ..+...
T Consensus        81 g~L~~~~~~----~~~l~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~~  153 (329)
T cd05588          81 GDLMFHMQR----QRKLPEEHARFYSAEISLALNFLHER---GIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGDTT  153 (329)
T ss_pred             CCHHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEECCCCCEEECcCccccccccCCCcc
Confidence            999998865    34689999999999999999999987   8999999999999999999999999999853 333333


Q ss_pred             eeecccceEEeccccc
Q 005587          671 QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       671 ~~~~~~~~~~apE~~~  686 (689)
                      ....++..|+|||++.
T Consensus       154 ~~~~gt~~y~aPE~~~  169 (329)
T cd05588         154 STFCGTPNYIAPEILR  169 (329)
T ss_pred             ccccCCccccCHHHHc
Confidence            4456788899999974

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=9.9e-26  Score=235.42  Aligned_cols=172  Identities=25%  Similarity=0.298  Sum_probs=146.2

Q ss_pred             CCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCC-hhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          510 SFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASS-QQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~-~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      .|+..++||+|+||.||++.. .+++.||||++...... ......+.+|++++++++||||+++++++...+..++|||
T Consensus         1 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (285)
T cd05605           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEe
Confidence            377789999999999999975 46899999998654322 2234567789999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+++|+|.+++....  ...+++..+..++.|++.||.|||+.   +|+||||||+||++++++.++|+|||+++.+...
T Consensus        81 ~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~  155 (285)
T cd05605          81 LMNGGDLKFHIYNMG--NPGFDEERAVFYAAEITCGLEDLHRE---RIVYRDLKPENILLDDYGHIRISDLGLAVEIPEG  155 (285)
T ss_pred             ccCCCcHHHHHHhcC--cCCCCHHHHHHHHHHHHHHHHHHHHC---CcEecCCCHHHEEECCCCCEEEeeCCCceecCCC
Confidence            999999998886432  34689999999999999999999987   8999999999999999999999999999887655


Q ss_pred             CcceeecccceEEeccccc
Q 005587          668 SVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~~~~~~~~~~~~apE~~~  686 (689)
                      .......++..|+|||++.
T Consensus       156 ~~~~~~~~~~~y~aPE~~~  174 (285)
T cd05605         156 ETIRGRVGTVGYMAPEVVK  174 (285)
T ss_pred             CccccccCCCCccCcHHhc
Confidence            4433345678899999974

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.93  E-value=1.1e-25  Score=252.16  Aligned_cols=172  Identities=18%  Similarity=0.156  Sum_probs=144.7

Q ss_pred             CCCccceEeecCCeEEEEEEeC-C-CcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP-D-GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~-~-g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      .|.+.+.||+|+||.||+|... + ++.||+|.+...  .......+.+|+++++.++|||||++++++...+..|+|||
T Consensus        68 ~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~--~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~E  145 (478)
T PTZ00267         68 MYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLN--DERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIME  145 (478)
T ss_pred             eEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccC--CHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEEE
Confidence            3778899999999999999543 4 678888876433  23444567889999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |++||+|.++++........+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.+...
T Consensus       146 ~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~~  222 (478)
T PTZ00267        146 YGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSR---KMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDS  222 (478)
T ss_pred             CCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCcCHHhEEECCCCcEEEEeCcCceecCCc
Confidence            9999999998865332344688999999999999999999987   8999999999999999999999999999987543


Q ss_pred             Cc---ceeecccceEEeccccc
Q 005587          668 SV---SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~---~~~~~~~~~~~apE~~~  686 (689)
                      ..   .....++..|+|||++.
T Consensus       223 ~~~~~~~~~~gt~~y~aPE~~~  244 (478)
T PTZ00267        223 VSLDVASSFCGTPYYLAPELWE  244 (478)
T ss_pred             cccccccccCCCccccCHhHhC
Confidence            22   22345788899999874

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.93  E-value=1.2e-25  Score=239.42  Aligned_cols=170  Identities=18%  Similarity=0.220  Sum_probs=142.2

Q ss_pred             CCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccC-ChhhHHHHHHHHHHHhcCCCC-CcceecEEEEeCCeEEEEE
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHA-NIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l~Hp-nIv~l~~~~~~~~~~~lV~  586 (689)
                      +|++.+.||+|+||.||+|+.. +++.||||++..... .....+.+..|.+++..++|+ +|+++++++...+..|+||
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVM   80 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEE
Confidence            4778899999999999999765 578999999875432 223456678889999999765 5888999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      ||+++|+|.+++...    ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++....
T Consensus        81 E~~~~g~L~~~~~~~----~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~  153 (324)
T cd05587          81 EYVNGGDLMYHIQQV----GKFKEPHAVFYAAEIAIGLFFLHSK---GIIYRDLKLDNVMLDAEGHIKIADFGMCKENIF  153 (324)
T ss_pred             cCCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEEcCCCCEEEeecCcceecCC
Confidence            999999999998753    3578999999999999999999987   899999999999999999999999999975432


Q ss_pred             -CCcceeecccceEEeccccc
Q 005587          667 -GSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 -~~~~~~~~~~~~~~apE~~~  686 (689)
                       ........++..|+|||++.
T Consensus       154 ~~~~~~~~~gt~~y~aPE~~~  174 (324)
T cd05587         154 GGKTTRTFCGTPDYIAPEIIA  174 (324)
T ss_pred             CCCceeeecCCccccChhhhc
Confidence             22333456788999999875

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.93  E-value=1.4e-25  Score=239.44  Aligned_cols=165  Identities=21%  Similarity=0.279  Sum_probs=138.9

Q ss_pred             ceEeecCCeEEEEEEeC-CCcEEEEEEeccccC-ChhhHHHHHHHHHHHhcC-CCCCcceecEEEEeCCeEEEEEeccCC
Q 005587          515 NLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRI-RHANIVELKGYCAEHGQRLLIYEYCSN  591 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~~~~~~lV~Ey~~g  591 (689)
                      +.||+|+||.||+|+.. +++.||+|++.+... .......+.+|+.++.++ +||||+++++++...+..|+||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~   80 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNG   80 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCC
Confidence            46999999999999754 688999999976532 223345677888888766 899999999999999999999999999


Q ss_pred             CCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcccc-CCCcc
Q 005587          592 GTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS-SGSVS  670 (689)
Q Consensus       592 gsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~-~~~~~  670 (689)
                      |+|.+++..    ...+++..+..|+.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++... .....
T Consensus        81 ~~L~~~~~~----~~~l~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~~~~~  153 (329)
T cd05618          81 GDLMFHMQR----QRKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTT  153 (329)
T ss_pred             CCHHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEECCCCCEEEeeCCccccccCCCCcc
Confidence            999988865    34689999999999999999999987   89999999999999999999999999998643 23333


Q ss_pred             eeecccceEEeccccc
Q 005587          671 QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       671 ~~~~~~~~~~apE~~~  686 (689)
                      ....++..|+|||++.
T Consensus       154 ~~~~gt~~y~aPE~~~  169 (329)
T cd05618         154 STFCGTPNYIAPEILR  169 (329)
T ss_pred             ccccCCccccCHHHHc
Confidence            3456788899999974

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.93  E-value=1.6e-25  Score=239.12  Aligned_cols=171  Identities=19%  Similarity=0.277  Sum_probs=147.7

Q ss_pred             ccCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      .++|++.+.||+|+||.||+++.. +|..||+|.+.... .......+.+|++++++++||||+++++++...+..++||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   82 (331)
T cd06649           4 DDDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEI-KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICM   82 (331)
T ss_pred             cccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeeccc-CHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEe
Confidence            367899999999999999999765 68899999987543 2344567899999999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      ||+++|+|.+++...    ..+++..+..++.|++.||.|||+.+  +|+||||||+|||++.++.+||+|||+++.+..
T Consensus        83 e~~~~~~L~~~l~~~----~~~~~~~~~~~~~~i~~~l~~lH~~~--~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  156 (331)
T cd06649          83 EHMDGGSLDQVLKEA----KRIPEEILGKVSIAVLRGLAYLREKH--QIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID  156 (331)
T ss_pred             ecCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHhhcC--CEEcCCCChhhEEEcCCCcEEEccCcccccccc
Confidence            999999999999753    35889999999999999999999852  699999999999999999999999999987754


Q ss_pred             CCcceeecccceEEeccccc
Q 005587          667 GSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 ~~~~~~~~~~~~~~apE~~~  686 (689)
                      ... ....++..|+|||++.
T Consensus       157 ~~~-~~~~g~~~y~aPE~~~  175 (331)
T cd06649         157 SMA-NSFVGTRSYMSPERLQ  175 (331)
T ss_pred             ccc-ccCCCCcCcCCHhHhc
Confidence            432 2245778899999874

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.93  E-value=9.8e-26  Score=252.82  Aligned_cols=177  Identities=21%  Similarity=0.271  Sum_probs=149.6

Q ss_pred             hccCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCC-----
Q 005587          507 YTNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHG-----  580 (689)
Q Consensus       507 ~~~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~-----  580 (689)
                      ..++|.+.+.||+|+||.||+|+. .+|+.||||++............+.+|+..+..++|+||+++++.+...+     
T Consensus        30 ~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~~  109 (496)
T PTZ00283         30 QAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNPE  109 (496)
T ss_pred             cCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCcc
Confidence            346899999999999999999964 57999999999776555566677889999999999999999988775432     


Q ss_pred             ---eEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEe
Q 005587          581 ---QRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSD  657 (689)
Q Consensus       581 ---~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~D  657 (689)
                         .+++||||+++|+|.++++........+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|
T Consensus       110 ~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~---~IiHrDLKP~NILl~~~~~vkL~D  186 (496)
T PTZ00283        110 NVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSK---HMIHRDIKSANILLCSNGLVKLGD  186 (496)
T ss_pred             cceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEeCCCCEEEEe
Confidence               36899999999999999976443345789999999999999999999987   899999999999999999999999


Q ss_pred             ecCCccccCC---CcceeecccceEEeccccc
Q 005587          658 CGLAPLISSG---SVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       658 FGla~~~~~~---~~~~~~~~~~~~~apE~~~  686 (689)
                      ||+++.+...   .......++..|+|||++.
T Consensus       187 FGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~  218 (496)
T PTZ00283        187 FGFSKMYAATVSDDVGRTFCGTPYYVAPEIWR  218 (496)
T ss_pred             cccCeeccccccccccccccCCcceeCHHHhC
Confidence            9999876542   2223345788899999985

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=3.8e-27  Score=242.53  Aligned_cols=169  Identities=26%  Similarity=0.398  Sum_probs=148.7

Q ss_pred             CCCccceEeecCCeEEEEEE-eCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          510 SFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      .|...++||+|.||.||+|. .++++.||+|++..... ....+++.+|+.++..++++||.++|+.|.....+|++|||
T Consensus        14 ~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~-~deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMey   92 (467)
T KOG0201|consen   14 LYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEA-EDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIMEY   92 (467)
T ss_pred             ccccchhccccccceeeeeeeccccceEEEEEechhhc-chhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHHH
Confidence            46667899999999999995 56789999999987654 34567788999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      |.||++.+.++..    ..+.+....-|+++++.||.|||+.   +.+|||||+.|||+..+|.+||+|||.+..+....
T Consensus        93 ~~gGsv~~lL~~~----~~~~E~~i~~ilre~l~~l~ylH~~---~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~  165 (467)
T KOG0201|consen   93 CGGGSVLDLLKSG----NILDEFEIAVILREVLKGLDYLHSE---KKIHRDIKAANILLSESGDVKLADFGVAGQLTNTV  165 (467)
T ss_pred             hcCcchhhhhccC----CCCccceeeeehHHHHHHhhhhhhc---ceecccccccceeEeccCcEEEEecceeeeeechh
Confidence            9999999999753    2346777788899999999999998   89999999999999999999999999999887655


Q ss_pred             cc-eeecccceEEeccccc
Q 005587          669 VS-QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       669 ~~-~~~~~~~~~~apE~~~  686 (689)
                      .. ....+|++||||||+.
T Consensus       166 ~rr~tfvGTPfwMAPEVI~  184 (467)
T KOG0201|consen  166 KRRKTFVGTPFWMAPEVIK  184 (467)
T ss_pred             hccccccccccccchhhhc
Confidence            33 6678899999999995

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.93  E-value=1.1e-25  Score=239.67  Aligned_cols=168  Identities=26%  Similarity=0.326  Sum_probs=138.9

Q ss_pred             CCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccC-ChhhHHHHHHHHHH---HhcCCCCCcceecEEEEeCCeEEEE
Q 005587          511 FSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRAS-SQQKDDEFLELVNN---IDRIRHANIVELKGYCAEHGQRLLI  585 (689)
Q Consensus       511 f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~---l~~l~HpnIv~l~~~~~~~~~~~lV  585 (689)
                      |++.+.||+|+||.||+|... +|+.||||++..... .....+.+.+|+++   ++.++||||+++++++...+..|+|
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv   80 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFV   80 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEE
Confidence            567789999999999999654 689999999975432 12233456666555   4677899999999999999999999


Q ss_pred             EeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcccc
Q 005587          586 YEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS  665 (689)
Q Consensus       586 ~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~  665 (689)
                      |||+++|+|..+++.     ..+++..+..++.|++.||.|||+.   +|+||||||+|||+++++.+||+|||+++...
T Consensus        81 ~E~~~~~~L~~~~~~-----~~l~~~~~~~~~~qi~~al~~lH~~---~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~  152 (324)
T cd05589          81 MEYAAGGDLMMHIHT-----DVFSEPRAVFYAACVVLGLQYLHEN---KIVYRDLKLDNLLLDTEGFVKIADFGLCKEGM  152 (324)
T ss_pred             EcCCCCCcHHHHhhc-----CCCCHHHHHHHHHHHHHHHHHHHhC---CeEecCCCHHHeEECCCCcEEeCcccCCccCC
Confidence            999999999988863     3589999999999999999999987   89999999999999999999999999988643


Q ss_pred             C-CCcceeecccceEEeccccc
Q 005587          666 S-GSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       666 ~-~~~~~~~~~~~~~~apE~~~  686 (689)
                      . ........++..|+|||++.
T Consensus       153 ~~~~~~~~~~g~~~y~aPE~~~  174 (324)
T cd05589         153 GFGDRTSTFCGTPEFLAPEVLT  174 (324)
T ss_pred             CCCCcccccccCccccCHhHhc
Confidence            2 22223345778899999874

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.93  E-value=1.1e-25  Score=240.37  Aligned_cols=172  Identities=20%  Similarity=0.258  Sum_probs=145.1

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccC-ChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      ++|++.+.||+|+||.||+++.. +++.||+|++.+... .......+.+|+.++..++|+||+++++++...+..|+||
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVM   80 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEE
Confidence            46888999999999999999765 578899999865321 1223445788999999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      ||+++|+|.+++...   ...+++..+..|+.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.+..
T Consensus        81 ey~~~g~L~~~l~~~---~~~l~~~~~~~~~~qi~~al~~lH~~---~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~  154 (332)
T cd05623          81 DYYVGGDLLTLLSKF---EDRLPEDMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDMNGHIRLADFGSCLKLME  154 (332)
T ss_pred             eccCCCcHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHEEECCCCCEEEeecchheeccc
Confidence            999999999999753   23588999999999999999999987   899999999999999999999999999986644


Q ss_pred             CCcc--eeecccceEEeccccc
Q 005587          667 GSVS--QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 ~~~~--~~~~~~~~~~apE~~~  686 (689)
                      ....  ....++..|+|||++.
T Consensus       155 ~~~~~~~~~~gt~~y~aPE~~~  176 (332)
T cd05623         155 DGTVQSSVAVGTPDYISPEILQ  176 (332)
T ss_pred             CCcceecccccCccccCHHHHh
Confidence            3322  2245788999999874

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.93  E-value=1.1e-25  Score=237.08  Aligned_cols=170  Identities=24%  Similarity=0.334  Sum_probs=142.4

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      ++|++.+.||+|+||.||+|+.. +++.||||++..... ......+.+|+++++.++||||+++++++...+..++|||
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e   83 (303)
T cd07869           5 DSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEE-EGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVFE   83 (303)
T ss_pred             ccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccc-cccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEEE
Confidence            57889999999999999999765 689999999875432 2233457789999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+. ++|.+++...   ...+++..+..++.|++.||+|||+.   +|+||||||+|||+++++.+||+|||+++.....
T Consensus        84 ~~~-~~l~~~~~~~---~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~  156 (303)
T cd07869          84 YVH-TDLCQYMDKH---PGGLHPENVKLFLFQLLRGLSYIHQR---YILHRDLKPQNLLISDTGELKLADFGLARAKSVP  156 (303)
T ss_pred             CCC-cCHHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEECCCCcceeccCC
Confidence            995 6888887643   24578899999999999999999987   8999999999999999999999999999865432


Q ss_pred             C-cceeecccceEEeccccc
Q 005587          668 S-VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~-~~~~~~~~~~~~apE~~~  686 (689)
                      . ......++..|+|||++.
T Consensus       157 ~~~~~~~~~~~~y~aPE~~~  176 (303)
T cd07869         157 SHTYSNEVVTLWYRPPDVLL  176 (303)
T ss_pred             CccCCCCcccCCCCChHHHc
Confidence            2 222245677899999874

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=6.5e-27  Score=246.55  Aligned_cols=167  Identities=30%  Similarity=0.453  Sum_probs=145.1

Q ss_pred             CCCccceEeecCCeEEEEEE-eCCCcEEEEEEecccc-CChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          510 SFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRA-SSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~-~~~g~~vAvK~l~~~~-~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      -|...+.||.|+||.||-|+ ..+.+.||||++.... .+.....+++.|++.|.+++|||+|.+.|+|......|||||
T Consensus        27 lf~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVME  106 (948)
T KOG0577|consen   27 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVME  106 (948)
T ss_pred             HHHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHH
Confidence            46667889999999999995 4578899999987543 234567789999999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      ||- ||-.|++.-.   ++++.+.++..|..+.++||.|||+.   +.||||||..|||+.+.|.+||+|||-|.++.+.
T Consensus       107 YCl-GSAsDlleVh---kKplqEvEIAAi~~gaL~gLaYLHS~---~~IHRDiKAGNILLse~g~VKLaDFGSAsi~~PA  179 (948)
T KOG0577|consen  107 YCL-GSASDLLEVH---KKPLQEVEIAAITHGALQGLAYLHSH---NRIHRDIKAGNILLSEPGLVKLADFGSASIMAPA  179 (948)
T ss_pred             HHh-ccHHHHHHHH---hccchHHHHHHHHHHHHHHHHHHHHh---hHHhhhccccceEecCCCeeeeccccchhhcCch
Confidence            995 5888887643   46788888999999999999999998   8999999999999999999999999999987544


Q ss_pred             CcceeecccceEEeccccc
Q 005587          668 SVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~~~~~~~~~~~~apE~~~  686 (689)
                      .   .-.||+||||||||.
T Consensus       180 n---sFvGTPywMAPEVIL  195 (948)
T KOG0577|consen  180 N---SFVGTPYWMAPEVIL  195 (948)
T ss_pred             h---cccCCccccchhHhe
Confidence            3   357899999999993

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.93  E-value=1.6e-27  Score=232.98  Aligned_cols=167  Identities=24%  Similarity=0.419  Sum_probs=148.4

Q ss_pred             cCCCccceEeecCCeEEEEE-EeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~-~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      +-|++.++||+|+||.||+| +.++|+.+|||.+...    .+..++..|+.++++++.|+||++||.|.....+|+|||
T Consensus        33 EVFDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~----sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVME  108 (502)
T KOG0574|consen   33 EVFDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVD----TDLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVME  108 (502)
T ss_pred             HHHHHHHHhcCCcchHHHHHHHhccCcEEEEEecCcc----chHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehh
Confidence            34677889999999999999 5567999999998653    457789999999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      ||.-|+..++++..   .+++.++++..+.+..++||+|||..   .-||||||..|||++.+|.+||+|||.|..+.+.
T Consensus       109 YCGAGSiSDI~R~R---~K~L~E~EIs~iL~~TLKGL~YLH~~---~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDT  182 (502)
T KOG0574|consen  109 YCGAGSISDIMRAR---RKPLSEQEISAVLRDTLKGLQYLHDL---KKIHRDIKAGNILLNTDGIAKLADFGVAGQLTDT  182 (502)
T ss_pred             hcCCCcHHHHHHHh---cCCccHHHHHHHHHHHHhHHHHHHHH---HHHHhhcccccEEEcccchhhhhhccccchhhhh
Confidence            99999999999864   57899999999999999999999987   6799999999999999999999999999988764


Q ss_pred             Ccc-eeecccceEEecccc
Q 005587          668 SVS-QVSHNLTIMRAGGVT  685 (689)
Q Consensus       668 ~~~-~~~~~~~~~~apE~~  685 (689)
                      -.. -.-.+|++||||||+
T Consensus       183 MAKRNTVIGTPFWMAPEVI  201 (502)
T KOG0574|consen  183 MAKRNTVIGTPFWMAPEVI  201 (502)
T ss_pred             HHhhCccccCcccccHHHH
Confidence            322 235688999999998

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.93  E-value=1.3e-25  Score=239.02  Aligned_cols=170  Identities=18%  Similarity=0.222  Sum_probs=141.6

Q ss_pred             CCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCC-hhhHHHHHHHHHHHhcC-CCCCcceecEEEEeCCeEEEEE
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASS-QQKDDEFLELVNNIDRI-RHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      +|++.+.||+|+||.||+|+.. +++.||||++.+.... ......+..|.+++..+ +|++|+++++++...+..|+||
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVM   80 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEE
Confidence            4778899999999999999765 5789999998764321 22334566777777776 5899999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      ||+++|+|.+++...    ..+++..++.++.|++.||+|||+.   +|+||||||+|||+++++.+||+|||+++....
T Consensus        81 E~~~~g~L~~~~~~~----~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~~  153 (323)
T cd05616          81 EYVNGGDLMYQIQQV----GRFKEPHAVFYAAEIAIGLFFLHSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENMW  153 (323)
T ss_pred             cCCCCCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CEEecCCCHHHeEECCCCcEEEccCCCceecCC
Confidence            999999999988753    4588999999999999999999987   899999999999999999999999999986542


Q ss_pred             -CCcceeecccceEEeccccc
Q 005587          667 -GSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 -~~~~~~~~~~~~~~apE~~~  686 (689)
                       ........++..|+|||++.
T Consensus       154 ~~~~~~~~~gt~~y~aPE~~~  174 (323)
T cd05616         154 DGVTTKTFCGTPDYIAPEIIA  174 (323)
T ss_pred             CCCccccCCCChhhcCHHHhc
Confidence             22333345788899999985

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.93  E-value=9.3e-26  Score=241.25  Aligned_cols=169  Identities=22%  Similarity=0.356  Sum_probs=140.8

Q ss_pred             CCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeC-----CeEE
Q 005587          510 SFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEH-----GQRL  583 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~-----~~~~  583 (689)
                      +|++.+.||+|+||.||+|.. .+|+.||||++............+.+|++++++++||||+++++++...     ...|
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~   80 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIY   80 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEE
Confidence            477889999999999999965 4689999999875433334456788999999999999999999988643     2579


Q ss_pred             EEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcc
Q 005587          584 LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPL  663 (689)
Q Consensus       584 lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~  663 (689)
                      +|||||. ++|.+++...    ..+++..+..++.|+++||.|||+.   +|+||||||+|||++.++.+||+|||+++.
T Consensus        81 lv~e~~~-~~L~~~l~~~----~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~  152 (338)
T cd07859          81 VVFELME-SDLHQVIKAN----DDLTPEHHQFFLYQLLRALKYIHTA---NVFHRDLKPKNILANADCKLKICDFGLARV  152 (338)
T ss_pred             EEEecCC-CCHHHHHHhc----ccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCcEEEccCccccc
Confidence            9999995 6999988752    3589999999999999999999997   899999999999999999999999999986


Q ss_pred             ccCCCcc----eeecccceEEeccccc
Q 005587          664 ISSGSVS----QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       664 ~~~~~~~----~~~~~~~~~~apE~~~  686 (689)
                      .......    ....++..|+|||++.
T Consensus       153 ~~~~~~~~~~~~~~~~t~~y~aPE~~~  179 (338)
T cd07859         153 AFNDTPTAIFWTDYVATRWYRAPELCG  179 (338)
T ss_pred             cccccCccccccCCCCCCCcCCHHHHh
Confidence            5432211    2345778899999874

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.93  E-value=1e-25  Score=235.76  Aligned_cols=170  Identities=22%  Similarity=0.327  Sum_probs=142.7

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      ++|.+.+.||+|+||.||+|+.. +++.||+|.+..... ......+.+|++++++++||||+++++++...+..++|||
T Consensus         5 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e   83 (288)
T cd07871           5 ETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHE-EGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLVFE   83 (288)
T ss_pred             ccceEeeEEecCCCEEEEEEEECCCCCEEEEEEeccccc-CCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEe
Confidence            46888999999999999999654 689999999865432 2234567789999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+.+ +|.+++...   ...+++..+..++.|++.||+|||+.   +|+||||||+|||+++++.+||+|||+++.....
T Consensus        84 ~~~~-~l~~~l~~~---~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~  156 (288)
T cd07871          84 YLDS-DLKQYLDNC---GNLMSMHNVKIFMFQLLRGLSYCHKR---KILHRDLKPQNLLINEKGELKLADFGLARAKSVP  156 (288)
T ss_pred             CCCc-CHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEECcCcceeeccCC
Confidence            9975 999988653   23578899999999999999999987   8999999999999999999999999999865433


Q ss_pred             C-cceeecccceEEeccccc
Q 005587          668 S-VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~-~~~~~~~~~~~~apE~~~  686 (689)
                      . ......++..|+|||++.
T Consensus       157 ~~~~~~~~~~~~y~aPE~~~  176 (288)
T cd07871         157 TKTYSNEVVTLWYRPPDVLL  176 (288)
T ss_pred             CccccCceecccccChHHhc
Confidence            2 222345678899999874

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.93  E-value=1.7e-25  Score=238.06  Aligned_cols=165  Identities=27%  Similarity=0.335  Sum_probs=135.9

Q ss_pred             ceEeecCCeEEEEEEeC-CCcEEEEEEeccccCC-hhhHHHHHHHHH-HHhcCCCCCcceecEEEEeCCeEEEEEeccCC
Q 005587          515 NLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASS-QQKDDEFLELVN-NIDRIRHANIVELKGYCAEHGQRLLIYEYCSN  591 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~~~~~~e~~-~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~g  591 (689)
                      +.||+|+||+||+|+.. +|+.||||++...... ......+..|.. +++.++||||+++++++...+..|+||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCC
Confidence            36999999999999764 6899999998754321 122334445544 56789999999999999999999999999999


Q ss_pred             CCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC-Ccc
Q 005587          592 GTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG-SVS  670 (689)
Q Consensus       592 gsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~-~~~  670 (689)
                      |+|.+++..    ...+++..+..++.||++||.|||+.   +|+||||||+|||++.++.+||+|||+++..... ...
T Consensus        81 g~L~~~l~~----~~~~~~~~~~~~~~qi~~~l~~lH~~---givH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~  153 (323)
T cd05575          81 GELFFHLQR----ERSFPEPRARFYAAEIASALGYLHSL---NIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSKTT  153 (323)
T ss_pred             CCHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCCHHHeEECCCCcEEEeccCCCcccccCCCcc
Confidence            999999875    34688999999999999999999987   8999999999999999999999999999864332 222


Q ss_pred             eeecccceEEeccccc
Q 005587          671 QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       671 ~~~~~~~~~~apE~~~  686 (689)
                      ....++..|+|||++.
T Consensus       154 ~~~~gt~~y~aPE~~~  169 (323)
T cd05575         154 STFCGTPEYLAPEVLR  169 (323)
T ss_pred             ccccCChhhcChhhhc
Confidence            3345788899999874

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.93  E-value=1.6e-25  Score=238.02  Aligned_cols=165  Identities=25%  Similarity=0.322  Sum_probs=135.4

Q ss_pred             ceEeecCCeEEEEEEeC-CCcEEEEEEeccccC-ChhhHHHHHHHHH-HHhcCCCCCcceecEEEEeCCeEEEEEeccCC
Q 005587          515 NLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRAS-SQQKDDEFLELVN-NIDRIRHANIVELKGYCAEHGQRLLIYEYCSN  591 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~~~e~~-~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~g  591 (689)
                      ++||+|+||.||+|+.. +|+.||+|++.+... .......+.+|.. +++.++||||+++++++...+..|+||||+++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNG   80 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            46999999999999764 688999999875432 1222344555544 57889999999999999999999999999999


Q ss_pred             CCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC-CCcc
Q 005587          592 GTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS-GSVS  670 (689)
Q Consensus       592 gsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~-~~~~  670 (689)
                      |+|.+.+..    ...+++..+..++.||++||.|||+.   +|+||||||+|||++.++.+||+|||+++.... ....
T Consensus        81 ~~L~~~l~~----~~~~~~~~~~~~~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~  153 (321)
T cd05603          81 GELFFHLQR----ERCFLEPRARFYAAEVASAIGYLHSL---NIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEETT  153 (321)
T ss_pred             CCHHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeEECCCCCEEEccCCCCccCCCCCCcc
Confidence            999988865    34578888999999999999999987   899999999999999999999999999986432 2222


Q ss_pred             eeecccceEEeccccc
Q 005587          671 QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       671 ~~~~~~~~~~apE~~~  686 (689)
                      ....++..|+|||++.
T Consensus       154 ~~~~gt~~y~aPE~~~  169 (321)
T cd05603         154 STFCGTPEYLAPEVLR  169 (321)
T ss_pred             ccccCCcccCCHHHhc
Confidence            3345678899999974

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.93  E-value=1.6e-25  Score=238.37  Aligned_cols=165  Identities=27%  Similarity=0.329  Sum_probs=136.5

Q ss_pred             ceEeecCCeEEEEEEe-CCCcEEEEEEeccccC-ChhhHHHHHHHHH-HHhcCCCCCcceecEEEEeCCeEEEEEeccCC
Q 005587          515 NLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRAS-SQQKDDEFLELVN-NIDRIRHANIVELKGYCAEHGQRLLIYEYCSN  591 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~~~~~~e~~-~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~g  591 (689)
                      +.||+|+||+||+|+. .+|+.||+|++..... .......+..|.. +++.++||||+++++++...+..|+||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNG   80 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCC
Confidence            3689999999999965 4689999999875432 1223345555554 46789999999999999999999999999999


Q ss_pred             CCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC-CCcc
Q 005587          592 GTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS-GSVS  670 (689)
Q Consensus       592 gsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~-~~~~  670 (689)
                      |+|.+++..    ...+++..+..++.||++||+|||+.   +|+||||||+|||+++++.+||+|||+++.... ....
T Consensus        81 ~~L~~~l~~----~~~~~~~~~~~~~~qi~~al~~lH~~---givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~~  153 (325)
T cd05604          81 GELFFHLQR----ERSFPEPRARFYAAEIASALGYLHSI---NIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSDTT  153 (325)
T ss_pred             CCHHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHeEECCCCCEEEeecCCcccCCCCCCCc
Confidence            999988865    34688999999999999999999987   899999999999999999999999999986432 2223


Q ss_pred             eeecccceEEeccccc
Q 005587          671 QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       671 ~~~~~~~~~~apE~~~  686 (689)
                      ....++..|+|||++.
T Consensus       154 ~~~~gt~~y~aPE~~~  169 (325)
T cd05604         154 TTFCGTPEYLAPEVIR  169 (325)
T ss_pred             ccccCChhhCCHHHHc
Confidence            3345788899999874

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.93  E-value=1.5e-25  Score=272.55  Aligned_cols=215  Identities=31%  Similarity=0.595  Sum_probs=137.7

Q ss_pred             CHhhHHHHHHHHHHhCCC--CCCCCCCCCCCCCCCCCccEEee-CCCeEEEEecCCCCCcccCccccCCCCCCEEEccCC
Q 005587           37 NPNDVAAINSLYAALGSP--VLPGWVASAGDPCGESWQGVQCN-ASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNN  113 (689)
Q Consensus        37 ~~~d~~aL~~~~~~l~~~--~l~~W~~~~~~~C~~~w~gv~C~-~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N  113 (689)
                      +++|..||+.||+++.++  .+.+|+. ..|+|  .|.||.|+ ..+|+.|+|++|+++|.++..|..+++|+.|+|++|
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~-~~~~c--~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n  103 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWNS-SADVC--LWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN  103 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCCC-CCCCC--cCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCC
Confidence            568999999999999876  5788974 46777  89999997 468999999999999998888888888888888888


Q ss_pred             cCCCCCCCccc---cccccccccCccCCCCC----------------------CcccCCCCCccEEEccCCcCCCCCChh
Q 005587          114 HIGGSIPSILP---VTMQNFFLSDNQFSGSI----------------------PSSLATLTLLTDMSLNNNLLSGEIPDA  168 (689)
Q Consensus       114 ~l~~~~p~~~~---~~L~~L~Ls~N~l~~~~----------------------p~~~~~l~~L~~L~Ls~N~l~g~~p~~  168 (689)
                      +++|.+|..+.   .+|++|+|++|++++.+                      |..|+++++|++|+|++|.+.+.+|..
T Consensus       104 ~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~  183 (968)
T PLN00113        104 QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS  183 (968)
T ss_pred             ccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh
Confidence            88887776543   45666666666655544                      444444555555555555555455555


Q ss_pred             hcCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccccccc-cccCCcc-ccccccccccCCCCCccccCCC---C
Q 005587          169 FQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTL-DVLQDLP-LRDLNIENNLFSGPIPEKMLQI---P  243 (689)
Q Consensus       169 ~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l---~  243 (689)
                      |+++++|++|+|++|++++.+|..++++++|++|+|++|++++.+ ..+..+. |++|+|++|++++.+|..+.++   .
T Consensus       184 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  263 (968)
T PLN00113        184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ  263 (968)
T ss_pred             hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCC
Confidence            555555555555555555445555555555555555555554433 2333333 5555555555555555444433   2


Q ss_pred             CccccCCcCCC
Q 005587          244 NFRKDGNPFNS  254 (689)
Q Consensus       244 ~l~~~~N~~~~  254 (689)
                      .|++.+|.+.+
T Consensus       264 ~L~L~~n~l~~  274 (968)
T PLN00113        264 YLFLYQNKLSG  274 (968)
T ss_pred             EEECcCCeeec
Confidence            33445555443

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.93  E-value=1.6e-25  Score=234.16  Aligned_cols=172  Identities=23%  Similarity=0.336  Sum_probs=139.4

Q ss_pred             cCCCccceEeecCCeEEEEEEe-C-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcC---CCCCcceecEEEEe-----
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-P-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI---RHANIVELKGYCAE-----  578 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~-~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l---~HpnIv~l~~~~~~-----  578 (689)
                      ++|++.+.||+|+||.||+|+. . +++.||||.+............+.+|+++++.+   +||||++++++|..     
T Consensus         1 ~~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~   80 (290)
T cd07862           1 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDR   80 (290)
T ss_pred             CCcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCC
Confidence            3688889999999999999975 3 468899999875443333334555666666554   79999999999863     


Q ss_pred             CCeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEee
Q 005587          579 HGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDC  658 (689)
Q Consensus       579 ~~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DF  658 (689)
                      ....++||||+. ++|.+++....  ...+++..+..++.|++.||.|||+.   +|+||||||+|||++.++.+||+||
T Consensus        81 ~~~~~lv~e~~~-~~l~~~~~~~~--~~~~~~~~~~~i~~qi~~aL~~lH~~---~iiH~dlkp~Nil~~~~~~~kl~Df  154 (290)
T cd07862          81 ETKLTLVFEHVD-QDLTTYLDKVP--EPGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADF  154 (290)
T ss_pred             CCcEEEEEccCC-CCHHHHHHhCC--CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEcCCCCEEEccc
Confidence            456899999996 69999987532  34589999999999999999999987   8999999999999999999999999


Q ss_pred             cCCccccCCCcceeecccceEEeccccc
Q 005587          659 GLAPLISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       659 Gla~~~~~~~~~~~~~~~~~~~apE~~~  686 (689)
                      |+++............++..|+|||++.
T Consensus       155 g~~~~~~~~~~~~~~~~~~~y~aPE~~~  182 (290)
T cd07862         155 GLARIYSFQMALTSVVVTLWYRAPEVLL  182 (290)
T ss_pred             cceEeccCCcccccccccccccChHHHh
Confidence            9998876554444456788899999873

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.93  E-value=2.4e-25  Score=237.92  Aligned_cols=171  Identities=18%  Similarity=0.281  Sum_probs=146.6

Q ss_pred             ccCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      .++|++.+.||+|+||.||+|... ++..+|+|.+.... .......+.+|++++++++||||++++++|...+..++||
T Consensus         4 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   82 (333)
T cd06650           4 DDDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEI-KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICM   82 (333)
T ss_pred             hhhhheeccccCCCCEEEEEEEECCCCcEEEEEEeeccc-CHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEEE
Confidence            367899999999999999999765 68889999886543 2344567899999999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      ||+++|+|.+++...    ..+++..+..++.|++.||.|||+.+  +|+||||||+|||++.++.+||+|||+++.+..
T Consensus        83 e~~~~~~L~~~l~~~----~~~~~~~~~~~~~~l~~~l~~lH~~~--~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~  156 (333)
T cd06650          83 EHMDGGSLDQVLKKA----GRIPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID  156 (333)
T ss_pred             ecCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHhcC--CEEecCCChhhEEEcCCCCEEEeeCCcchhhhh
Confidence            999999999999753    35788999999999999999999742  699999999999999999999999999987644


Q ss_pred             CCcceeecccceEEeccccc
Q 005587          667 GSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 ~~~~~~~~~~~~~~apE~~~  686 (689)
                      ... ....++..|+|||++.
T Consensus       157 ~~~-~~~~~~~~y~aPE~~~  175 (333)
T cd06650         157 SMA-NSFVGTRSYMSPERLQ  175 (333)
T ss_pred             hcc-ccCCCCccccCHHHhc
Confidence            322 2235677899999874

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.93  E-value=8.7e-26  Score=244.23  Aligned_cols=166  Identities=24%  Similarity=0.338  Sum_probs=144.0

Q ss_pred             CCCccceEeecCCeEEEEE-EeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCC-C-----CCcceecEEEEeCCeE
Q 005587          510 SFSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR-H-----ANIVELKGYCAEHGQR  582 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~-~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~-H-----pnIv~l~~~~~~~~~~  582 (689)
                      +|.+.++||+|+||+|.+| +.++++.||||+++..   .....+-..|+.+|..|+ |     -|+|++++||..+++.
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~---k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~Hl  263 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNK---KRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHL  263 (586)
T ss_pred             EEEEEEEecccccceeEEEEecCCCcEEEEEeeccC---hHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccccce
Confidence            7889999999999999999 5667999999999754   234456678899998887 3     4899999999999999


Q ss_pred             EEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCC--CcEEEEeecC
Q 005587          583 LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDD--LAVSVSDCGL  660 (689)
Q Consensus       583 ~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~--~~~kl~DFGl  660 (689)
                      +||+|.++ -+|+++|+...  -..++...++.|+.||+.||.+||+.   +|||+||||+||||.+.  ..+||+|||.
T Consensus       264 ciVfELL~-~NLYellK~n~--f~Glsl~~ir~~~~Qil~~L~~L~~l---~IIHcDLKPENILL~~~~r~~vKVIDFGS  337 (586)
T KOG0667|consen  264 CIVFELLS-TNLYELLKNNK--FRGLSLPLVRKFAQQILTALLFLHEL---GIIHCDLKPENILLKDPKRSRIKVIDFGS  337 (586)
T ss_pred             eeeehhhh-hhHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCChhheeeccCCcCceeEEeccc
Confidence            99999995 59999999865  35689999999999999999999987   89999999999999753  3799999999


Q ss_pred             CccccCCCcceeecccceEEeccccc
Q 005587          661 APLISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       661 a~~~~~~~~~~~~~~~~~~~apE~~~  686 (689)
                      |.+....-.  ......+|||||||.
T Consensus       338 Sc~~~q~vy--tYiQSRfYRAPEVIL  361 (586)
T KOG0667|consen  338 SCFESQRVY--TYIQSRFYRAPEVIL  361 (586)
T ss_pred             ccccCCcce--eeeeccccccchhhc
Confidence            999876665  456789999999994

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.93  E-value=1.7e-25  Score=233.12  Aligned_cols=167  Identities=25%  Similarity=0.280  Sum_probs=140.3

Q ss_pred             EeecCCeEEEEEEeC-CCcEEEEEEeccccCC-hhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccCCCCH
Q 005587          517 IGAGMLGSVYRAQLP-DGKLLAVKKLDKRASS-QQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTL  594 (689)
Q Consensus       517 iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~ggsL  594 (689)
                      ||+|+||+||++... +|+.||||.+...... ....+.+..|++++++++|+||+++.+++...+..++||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L   80 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDL   80 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCH
Confidence            699999999999654 7899999998754322 22335678899999999999999999999999999999999999999


Q ss_pred             HHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCcc-eee
Q 005587          595 QDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVS-QVS  673 (689)
Q Consensus       595 ~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~-~~~  673 (689)
                      .+++.........+++..++.++.||+.||.|||+.   +|+||||||+||++++++.+||+|||+++.+..+... ...
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~  157 (280)
T cd05608          81 RYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQR---RIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSKTKGY  157 (280)
T ss_pred             HHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEeeCccceecCCCCcccccc
Confidence            988865333345689999999999999999999987   8999999999999999999999999999877554322 223


Q ss_pred             cccceEEeccccc
Q 005587          674 HNLTIMRAGGVTH  686 (689)
Q Consensus       674 ~~~~~~~apE~~~  686 (689)
                      .++..|+|||++.
T Consensus       158 ~g~~~y~aPE~~~  170 (280)
T cd05608         158 AGTPGFMAPELLQ  170 (280)
T ss_pred             CCCcCccCHHHhc
Confidence            5667899999874

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.93  E-value=1.5e-25  Score=243.37  Aligned_cols=174  Identities=26%  Similarity=0.366  Sum_probs=142.8

Q ss_pred             cCCCccceEeecCCeEEEEEEe------CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcC-CCCCcceecEEEEeCCe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL------PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHANIVELKGYCAEHGQ  581 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~------~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~~~~  581 (689)
                      ++|++.+.||+|+||.||+|.+      .++..||||++..... ....+.+.+|++++..+ +|||||+++++|...+.
T Consensus        35 ~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~-~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~~~  113 (375)
T cd05104          35 NRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAH-LTEREALMSELKVLSYLGNHINIVNLLGACTVGGP  113 (375)
T ss_pred             HHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcC-cHHHHHHHHHHHHHHHhcCCcceeeeeeeeccCCc
Confidence            4688889999999999999953      2456899999865432 23456788999999999 89999999999999999


Q ss_pred             EEEEEeccCCCCHHHHHhcCcc----------------------------------------------------------
Q 005587          582 RLLIYEYCSNGTLQDMLHSDDE----------------------------------------------------------  603 (689)
Q Consensus       582 ~~lV~Ey~~ggsL~~~l~~~~~----------------------------------------------------------  603 (689)
                      .++|||||++|+|.++++....                                                          
T Consensus       114 ~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (375)
T cd05104         114 TLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVRSGS  193 (375)
T ss_pred             ceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccccccccccce
Confidence            9999999999999999875321                                                          


Q ss_pred             -------------cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCcc
Q 005587          604 -------------LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVS  670 (689)
Q Consensus       604 -------------~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~  670 (689)
                                   ....++|..+++++.||++||.|||+.   +|+||||||+|||+++++.+||+|||+++.+......
T Consensus       194 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~  270 (375)
T cd05104         194 YIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASK---NCIHRDLAARNILLTHGRITKICDFGLARDIRNDSNY  270 (375)
T ss_pred             ecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCchhhEEEECCCcEEEecCccceeccCcccc
Confidence                         012578999999999999999999987   8999999999999999999999999999877544321


Q ss_pred             e---eecccceEEeccccc
Q 005587          671 Q---VSHNLTIMRAGGVTH  686 (689)
Q Consensus       671 ~---~~~~~~~~~apE~~~  686 (689)
                      .   ....+..|+|||++.
T Consensus       271 ~~~~~~~~~~~y~aPE~~~  289 (375)
T cd05104         271 VVKGNARLPVKWMAPESIF  289 (375)
T ss_pred             cccCCCCCCcceeChhHhc
Confidence            1   112234699999874

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.93  E-value=2e-25  Score=237.15  Aligned_cols=165  Identities=21%  Similarity=0.264  Sum_probs=138.1

Q ss_pred             ceEeecCCeEEEEEEeC-CCcEEEEEEeccccC-ChhhHHHHHHHHHHHhcC-CCCCcceecEEEEeCCeEEEEEeccCC
Q 005587          515 NLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRI-RHANIVELKGYCAEHGQRLLIYEYCSN  591 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~~~~~~lV~Ey~~g  591 (689)
                      ++||+|+||.||+|+.. +++.||||++.+... .....+.+..|.+++..+ +||||+++++++...+..|+||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~   80 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNG   80 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCC
Confidence            36999999999999764 688999999875432 123345667788888766 699999999999999999999999999


Q ss_pred             CCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC-CCcc
Q 005587          592 GTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS-GSVS  670 (689)
Q Consensus       592 gsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~-~~~~  670 (689)
                      |+|.+++...    ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.... ....
T Consensus        81 g~L~~~i~~~----~~l~~~~~~~~~~ql~~~L~~lH~~---~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~~~~~  153 (320)
T cd05590          81 GDLMFHIQKS----RRFDEARARFYAAEITSALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKTT  153 (320)
T ss_pred             chHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCCHHHeEECCCCcEEEeeCCCCeecCcCCCcc
Confidence            9999988753    4588999999999999999999987   899999999999999999999999999986432 2233


Q ss_pred             eeecccceEEeccccc
Q 005587          671 QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       671 ~~~~~~~~~~apE~~~  686 (689)
                      ....++..|+|||++.
T Consensus       154 ~~~~gt~~y~aPE~~~  169 (320)
T cd05590         154 STFCGTPDYIAPEILQ  169 (320)
T ss_pred             cccccCccccCHHHHc
Confidence            3345788899999874

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.93  E-value=1.3e-26  Score=228.22  Aligned_cols=174  Identities=21%  Similarity=0.285  Sum_probs=143.7

Q ss_pred             cCCCccceEeecCCeEEEEEEeCC-----CcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEe-CCeE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPD-----GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAE-HGQR  582 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~~-----g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~-~~~~  582 (689)
                      ..|+....||+|+||.||+|..++     .+.+|+|.++.............+|+..++.++|||||.+..++.+ +..+
T Consensus        24 ~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~~v  103 (438)
T KOG0666|consen   24 FEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHDKKV  103 (438)
T ss_pred             HHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccCceE
Confidence            467888899999999999995432     2479999997664434445667899999999999999999998887 7889


Q ss_pred             EEEEeccCCCCHHHHHhcCcc-cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCC----CcEEEEe
Q 005587          583 LLIYEYCSNGTLQDMLHSDDE-LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDD----LAVSVSD  657 (689)
Q Consensus       583 ~lV~Ey~~ggsL~~~l~~~~~-~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~----~~~kl~D  657 (689)
                      ||++||.++ +|.++|+.++. ..+.++...+..|+.||+.|+.|||++   =|+||||||.|||+..+    |.+||+|
T Consensus       104 ~l~fdYAEh-DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~N---WvlHRDLKPaNIlvmgdgperG~VKIaD  179 (438)
T KOG0666|consen  104 WLLFDYAEH-DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSN---WVLHRDLKPANILVMGDGPERGRVKIAD  179 (438)
T ss_pred             EEEehhhhh-hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhh---heeeccCCcceEEEeccCCccCeeEeec
Confidence            999999987 99999876542 235788899999999999999999998   49999999999999766    8999999


Q ss_pred             ecCCccccCCCccee----ecccceEEeccccc
Q 005587          658 CGLAPLISSGSVSQV----SHNLTIMRAGGVTH  686 (689)
Q Consensus       658 FGla~~~~~~~~~~~----~~~~~~~~apE~~~  686 (689)
                      ||+|+++...-....    -..|.+|+|||.+.
T Consensus       180 lGlaR~~~~plkpl~s~d~VVVTiWYRAPELLL  212 (438)
T KOG0666|consen  180 LGLARLFNNPLKPLASLDPVVVTIWYRAPELLL  212 (438)
T ss_pred             ccHHHHhhccccccccCCceEEEEEecChHHhc
Confidence            999999876443321    34567899999984

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.93  E-value=2.1e-25  Score=237.21  Aligned_cols=165  Identities=19%  Similarity=0.240  Sum_probs=137.8

Q ss_pred             ceEeecCCeEEEEEEeC-CCcEEEEEEeccccC-ChhhHHHHHHHHHHHhcC-CCCCcceecEEEEeCCeEEEEEeccCC
Q 005587          515 NLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRI-RHANIVELKGYCAEHGQRLLIYEYCSN  591 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~~~~~~lV~Ey~~g  591 (689)
                      ++||+|+||.||+|+.. +++.||||++..... .......+..|.+++..+ +||||+++++++...+..|+||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~   80 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNG   80 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCC
Confidence            36899999999999765 588999999875432 123345677788888765 799999999999999999999999999


Q ss_pred             CCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC-Ccc
Q 005587          592 GTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG-SVS  670 (689)
Q Consensus       592 gsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~-~~~  670 (689)
                      |+|.+++...    ..+++..+..++.|+++||.|||+.   +|+||||||+|||++.++.+||+|||+++..... ...
T Consensus        81 ~~L~~~l~~~----~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~  153 (321)
T cd05591          81 GDLMFQIQRS----RKFDEPRSRFYAAEVTLALMFLHRH---GVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVTT  153 (321)
T ss_pred             CcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEEeecccceecccCCccc
Confidence            9999988753    4688999999999999999999987   8999999999999999999999999999864322 222


Q ss_pred             eeecccceEEeccccc
Q 005587          671 QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       671 ~~~~~~~~~~apE~~~  686 (689)
                      ....++..|+|||++.
T Consensus       154 ~~~~gt~~y~aPE~~~  169 (321)
T cd05591         154 TTFCGTPDYIAPEILQ  169 (321)
T ss_pred             cccccCccccCHHHHc
Confidence            3345778899999874

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.93  E-value=2.2e-25  Score=237.20  Aligned_cols=170  Identities=17%  Similarity=0.213  Sum_probs=141.3

Q ss_pred             CCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccC-ChhhHHHHHHHHHHHhcCC-CCCcceecEEEEeCCeEEEEE
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIR-HANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l~-HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      +|+..+.||+|+||.||+|+.. +|+.||+|++.+... .......+..|.+++..+. |++|+++++++...+..|+||
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVM   80 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEE
Confidence            3667889999999999999754 689999999875432 1233456778888888775 577888999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      ||+++|+|.+++...    ..+++..++.|+.|++.||+|||+.   +|+||||||+|||+++++.+||+|||+++....
T Consensus        81 Ey~~~g~L~~~i~~~----~~l~~~~~~~i~~qi~~al~~lH~~---~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~~  153 (323)
T cd05615          81 EYVNGGDLMYHIQQV----GKFKEPQAVFYAAEISVGLFFLHRR---GIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMV  153 (323)
T ss_pred             cCCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEEeccccccccCC
Confidence            999999999998752    4689999999999999999999987   899999999999999999999999999986533


Q ss_pred             CC-cceeecccceEEeccccc
Q 005587          667 GS-VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 ~~-~~~~~~~~~~~~apE~~~  686 (689)
                      .. ......++..|+|||++.
T Consensus       154 ~~~~~~~~~gt~~y~aPE~~~  174 (323)
T cd05615         154 DGVTTRTFCGTPDYIAPEIIA  174 (323)
T ss_pred             CCccccCccCCccccCHHHHc
Confidence            22 223345778899999974

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=5.4e-26  Score=236.19  Aligned_cols=172  Identities=22%  Similarity=0.300  Sum_probs=157.2

Q ss_pred             cCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      .-|++++.||+|.|.+|-+|++ -+|..||||++.+...+......+.+|++.|+-++|||||++|++...+..+|||+|
T Consensus        18 GLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiLE   97 (864)
T KOG4717|consen   18 GLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLILE   97 (864)
T ss_pred             eeehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEEE
Confidence            3577788999999999999954 489999999999888777777789999999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEec-CCCcEEEEeecCCccccC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLD-DDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~-~~~~~kl~DFGla~~~~~  666 (689)
                      +-.+|+|+++|-.+.   ..+.+..+.+|+.||..|+.|+|+.   .+|||||||+||.+. .-|-+||+|||++-.+.+
T Consensus        98 LGD~GDl~DyImKHe---~Gl~E~La~kYF~QI~~AI~YCHqL---HVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~P  171 (864)
T KOG4717|consen   98 LGDGGDLFDYIMKHE---EGLNEDLAKKYFAQIVHAISYCHQL---HVVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQP  171 (864)
T ss_pred             ecCCchHHHHHHhhh---ccccHHHHHHHHHHHHHHHHHHhhh---hhhcccCCcceeEEeeecCceEeeeccccccCCC
Confidence            999999999997653   4688999999999999999999988   699999999999875 578999999999999999


Q ss_pred             CCcceeecccceEEeccccc
Q 005587          667 GSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 ~~~~~~~~~~~~~~apE~~~  686 (689)
                      +..-...++...|.||||+.
T Consensus       172 G~kL~TsCGSLAYSAPEILL  191 (864)
T KOG4717|consen  172 GKKLTTSCGSLAYSAPEILL  191 (864)
T ss_pred             cchhhcccchhhccCchhhh
Confidence            99888899999999999995

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.93  E-value=2.6e-25  Score=236.90  Aligned_cols=165  Identities=25%  Similarity=0.318  Sum_probs=134.8

Q ss_pred             ceEeecCCeEEEEEEeC-CCcEEEEEEeccccCC-hhhHHHHHHHH-HHHhcCCCCCcceecEEEEeCCeEEEEEeccCC
Q 005587          515 NLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASS-QQKDDEFLELV-NNIDRIRHANIVELKGYCAEHGQRLLIYEYCSN  591 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~~~~~~e~-~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~g  591 (689)
                      +.||+|+||.||+|+.. +++.||+|++...... ......+..|. .+++.++||||+++++++...+..|+||||+++
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYING   80 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCC
Confidence            36999999999999765 5788999998754321 12233444444 456789999999999999999999999999999


Q ss_pred             CCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC-CCcc
Q 005587          592 GTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS-GSVS  670 (689)
Q Consensus       592 gsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~-~~~~  670 (689)
                      |+|.+++...    ..+.+..+..++.||++||+|||+.   +|+||||||+|||++.++.+||+|||+++.... ....
T Consensus        81 ~~L~~~~~~~----~~~~~~~~~~~~~qi~~~L~~lH~~---giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~~~~~  153 (325)
T cd05602          81 GELFYHLQRE----RCFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNGTT  153 (325)
T ss_pred             CcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEECCCCCEEEccCCCCcccccCCCCc
Confidence            9999998752    3577888889999999999999987   899999999999999999999999999986433 2223


Q ss_pred             eeecccceEEeccccc
Q 005587          671 QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       671 ~~~~~~~~~~apE~~~  686 (689)
                      ....++..|+|||++.
T Consensus       154 ~~~~gt~~y~aPE~~~  169 (325)
T cd05602         154 STFCGTPEYLAPEVLH  169 (325)
T ss_pred             ccccCCccccCHHHHc
Confidence            3345788999999874

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.93  E-value=3.8e-26  Score=247.51  Aligned_cols=172  Identities=27%  Similarity=0.427  Sum_probs=147.8

Q ss_pred             CCccceEeecCCeEEEEEE-eCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeC------CeEE
Q 005587          511 FSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEH------GQRL  583 (689)
Q Consensus       511 f~~~~~iG~G~~G~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~------~~~~  583 (689)
                      |...+.||+|+||.||+|+ .++|+.||||.++... .....+...+|++++++++|+|||++++.=++.      ....
T Consensus        15 W~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~-~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~v   93 (732)
T KOG4250|consen   15 WEMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKES-SLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPV   93 (732)
T ss_pred             eeehhhhcCCccceeeeecccccccchhHHhhhhhc-ccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccce
Confidence            3445789999999999998 5679999999987654 234566778999999999999999999876543      3568


Q ss_pred             EEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEec--CCCc--EEEEeec
Q 005587          584 LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLD--DDLA--VSVSDCG  659 (689)
Q Consensus       584 lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~--~~~~--~kl~DFG  659 (689)
                      +|||||.||||+.++.+... ...+++.+.+.+...+..||.|||++   +|+||||||.||++-  ++|+  .||+|||
T Consensus        94 lvmEyC~gGsL~~~L~~PEN-~~GLpE~e~l~lL~d~~~al~~LrEn---~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG  169 (732)
T KOG4250|consen   94 LVMEYCSGGSLRKVLNSPEN-AYGLPESEFLDLLSDLVSALRHLREN---GIVHRDLKPGNIVLQIGEDGQSIYKLTDFG  169 (732)
T ss_pred             EEEeecCCCcHHHHhcCccc-ccCCCHHHHHHHHHHHHHHHHHHHHc---CceeccCCCCcEEEeecCCCceEEeeeccc
Confidence            99999999999999987544 35799999999999999999999987   899999999999983  4454  5999999


Q ss_pred             CCccccCCCcceeecccceEEecccccc
Q 005587          660 LAPLISSGSVSQVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       660 la~~~~~~~~~~~~~~~~~~~apE~~~~  687 (689)
                      .||-+.+++.-....||..|.+||+.++
T Consensus       170 ~Arel~d~s~~~S~vGT~~YLhPel~E~  197 (732)
T KOG4250|consen  170 AARELDDNSLFTSLVGTEEYLHPELYER  197 (732)
T ss_pred             ccccCCCCCeeeeecCchhhcChHHHhh
Confidence            9999999998888899999999999863

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.93  E-value=2e-25  Score=242.27  Aligned_cols=174  Identities=26%  Similarity=0.389  Sum_probs=142.4

Q ss_pred             cCCCccceEeecCCeEEEEEEeC------CCcEEEEEEeccccCChhhHHHHHHHHHHHhcC-CCCCcceecEEEEeCCe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP------DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHANIVELKGYCAEHGQ  581 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~~~~  581 (689)
                      ++|++.+.||+|+||.||+|...      ++..||||++..... ......+.+|+++++.+ +|+|||+++++|...+.
T Consensus        38 ~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~~~  116 (374)
T cd05106          38 DNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAH-TDEREALMSELKILSHLGQHKNIVNLLGACTHGGP  116 (374)
T ss_pred             HHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCC-HHHHHHHHHHHHHHHhhccCCceeeEeeEecCCCC
Confidence            57888999999999999998632      245799999975433 23456788999999999 89999999999999999


Q ss_pred             EEEEEeccCCCCHHHHHhcCcc----------------------------------------------------------
Q 005587          582 RLLIYEYCSNGTLQDMLHSDDE----------------------------------------------------------  603 (689)
Q Consensus       582 ~~lV~Ey~~ggsL~~~l~~~~~----------------------------------------------------------  603 (689)
                      .++|||||++|+|.+++.....                                                          
T Consensus       117 ~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (374)
T cd05106         117 VLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQSSD  196 (374)
T ss_pred             eEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCcccccccccc
Confidence            9999999999999999864211                                                          


Q ss_pred             --------cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCccee---
Q 005587          604 --------LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQV---  672 (689)
Q Consensus       604 --------~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~~---  672 (689)
                              ....+++..+++|+.||++||+|||+.   +|+||||||+|||+++++.+||+|||+++.+........   
T Consensus       197 ~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~---giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~~~~~~  273 (374)
T cd05106         197 SKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASK---NCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGN  273 (374)
T ss_pred             ccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CEEeccCchheEEEeCCCeEEEeeceeeeeccCCcceeeccC
Confidence                    013478899999999999999999987   899999999999999999999999999987654432211   


Q ss_pred             ecccceEEeccccc
Q 005587          673 SHNLTIMRAGGVTH  686 (689)
Q Consensus       673 ~~~~~~~~apE~~~  686 (689)
                      ...+..|+|||++.
T Consensus       274 ~~~~~~y~aPE~~~  287 (374)
T cd05106         274 ARLPVKWMAPESIF  287 (374)
T ss_pred             CCCccceeCHHHhc
Confidence            11234699999874

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.93  E-value=2.6e-25  Score=235.87  Aligned_cols=165  Identities=20%  Similarity=0.260  Sum_probs=136.0

Q ss_pred             ceEeecCCeEEEEEEeC-CCcEEEEEEeccccC-ChhhHHHHHHHHHHHhc-CCCCCcceecEEEEeCCeEEEEEeccCC
Q 005587          515 NLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDR-IRHANIVELKGYCAEHGQRLLIYEYCSN  591 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~-l~HpnIv~l~~~~~~~~~~~lV~Ey~~g  591 (689)
                      ++||+|+||.||+|+.. +++.||||.+..... .....+.+..|..++.. .+||||+++++++...+..|+||||++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~g   80 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            36999999999999764 588999999875432 12233445566666654 5899999999999999999999999999


Q ss_pred             CCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC-cc
Q 005587          592 GTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS-VS  670 (689)
Q Consensus       592 gsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~-~~  670 (689)
                      |+|.+++...    ..+++..+..|+.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+++...... ..
T Consensus        81 g~L~~~~~~~----~~~~~~~~~~~~~qi~~al~~LH~~---~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~~~~  153 (316)
T cd05592          81 GDLMFHIQSS----GRFDEARARFYAAEIICGLQFLHKK---GIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEGKA  153 (316)
T ss_pred             CcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CEEeCCCCHHHeEECCCCCEEEccCcCCeECCCCCCcc
Confidence            9999998753    3588899999999999999999997   89999999999999999999999999998654322 22


Q ss_pred             eeecccceEEeccccc
Q 005587          671 QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       671 ~~~~~~~~~~apE~~~  686 (689)
                      ....++..|+|||++.
T Consensus       154 ~~~~gt~~y~aPE~~~  169 (316)
T cd05592         154 STFCGTPDYIAPEILK  169 (316)
T ss_pred             ccccCCccccCHHHHc
Confidence            3345788999999874

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.93  E-value=4e-26  Score=208.23  Aligned_cols=169  Identities=21%  Similarity=0.353  Sum_probs=145.4

Q ss_pred             CCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          510 SFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      +|+..++||+|.||+||+|+. .+++.||+|+++....++......++|+-+++.++|.|||++++....+...-+|+||
T Consensus         3 ~ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsdkkltlvfe~   82 (292)
T KOG0662|consen    3 KYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEF   82 (292)
T ss_pred             chHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHHH
Confidence            456678999999999999964 5689999999987766566667788999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      |. .+|..+...-   ...++.+.+..++.|+++||.|+|+.   +++|||+||.|+||+.+|++|++|||+|+-+.-.-
T Consensus        83 cd-qdlkkyfdsl---ng~~d~~~~rsfmlqllrgl~fchsh---nvlhrdlkpqnllin~ngelkladfglarafgipv  155 (292)
T KOG0662|consen   83 CD-QDLKKYFDSL---NGDLDPEIVRSFMLQLLRGLGFCHSH---NVLHRDLKPQNLLINRNGELKLADFGLARAFGIPV  155 (292)
T ss_pred             hh-HHHHHHHHhc---CCcCCHHHHHHHHHHHHhhhhhhhhh---hhhhccCCcceEEeccCCcEEecccchhhhcCCce
Confidence            95 4888887653   45688899999999999999999997   89999999999999999999999999999875443


Q ss_pred             -cceeecccceEEecccc
Q 005587          669 -VSQVSHNLTIMRAGGVT  685 (689)
Q Consensus       669 -~~~~~~~~~~~~apE~~  685 (689)
                       --.....+.+|+.|.++
T Consensus       156 rcysaevvtlwyrppdvl  173 (292)
T KOG0662|consen  156 RCYSAEVVTLWYRPPDVL  173 (292)
T ss_pred             EeeeceeeeeeccCccee
Confidence             22234567889999887

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.93  E-value=3.4e-25  Score=236.14  Aligned_cols=165  Identities=21%  Similarity=0.272  Sum_probs=139.4

Q ss_pred             ceEeecCCeEEEEEEeC-CCcEEEEEEeccccCC-hhhHHHHHHHHHHHhcC-CCCCcceecEEEEeCCeEEEEEeccCC
Q 005587          515 NLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASS-QQKDDEFLELVNNIDRI-RHANIVELKGYCAEHGQRLLIYEYCSN  591 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~~~~~~lV~Ey~~g  591 (689)
                      +.||+|+||.||+|+.. +++.||+|++...... ......+.+|+.++.++ +||||+++++++...+..|+||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNG   80 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCC
Confidence            46999999999999764 6789999999765322 23345678888888887 699999999999999999999999999


Q ss_pred             CCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcccc-CCCcc
Q 005587          592 GTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS-SGSVS  670 (689)
Q Consensus       592 gsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~-~~~~~  670 (689)
                      |+|.+++..    ...+++..+..|+.|+++||+|||+.   +|+||||||+|||++.++.+||+|||+++... .....
T Consensus        81 ~~L~~~~~~----~~~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~  153 (327)
T cd05617          81 GDLMFHMQR----QRKLPEEHARFYAAEICIALNFLHER---GIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGDTT  153 (327)
T ss_pred             CcHHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEeCCCCEEEeccccceeccCCCCce
Confidence            999998865    24689999999999999999999997   89999999999999999999999999998632 23333


Q ss_pred             eeecccceEEeccccc
Q 005587          671 QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       671 ~~~~~~~~~~apE~~~  686 (689)
                      ....++..|+|||++.
T Consensus       154 ~~~~gt~~y~aPE~~~  169 (327)
T cd05617         154 STFCGTPNYIAPEILR  169 (327)
T ss_pred             ecccCCcccCCHHHHC
Confidence            3356788899999974

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.93  E-value=4.3e-25  Score=228.08  Aligned_cols=171  Identities=23%  Similarity=0.378  Sum_probs=143.0

Q ss_pred             cCCCccceEeecCCeEEEEEEeC----CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP----DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLL  584 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~----~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~l  584 (689)
                      ++|++.+.||+|+||.||+|.+.    .+..||+|.+..... ......|.+|+..+++++||||+++++++...+..++
T Consensus         5 ~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l   83 (266)
T cd05064           5 KSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCS-DKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTMMI   83 (266)
T ss_pred             HHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCC-HHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCcEE
Confidence            46888899999999999999653    357899999876432 3445678999999999999999999999999999999


Q ss_pred             EEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccc
Q 005587          585 IYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI  664 (689)
Q Consensus       585 V~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~  664 (689)
                      ||||+++|+|.+++...   ...+++..++.++.|++.||+|||+.   +++||||||+|||++.++.+|++|||.+...
T Consensus        84 v~e~~~~~~L~~~l~~~---~~~l~~~~~~~~~~~i~~al~~lH~~---~iiH~dikp~nili~~~~~~~l~dfg~~~~~  157 (266)
T cd05064          84 VTEYMSNGALDSFLRKH---EGQLVAGQLMGMLPGLASGMKYLSEM---GYVHKGLAAHKVLVNSDLVCKISGFRRLQED  157 (266)
T ss_pred             EEEeCCCCcHHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHHHHC---CEeeccccHhhEEEcCCCcEEECCCcccccc
Confidence            99999999999998753   23689999999999999999999987   8999999999999999999999999988765


Q ss_pred             cCCCcce--eecccceEEeccccc
Q 005587          665 SSGSVSQ--VSHNLTIMRAGGVTH  686 (689)
Q Consensus       665 ~~~~~~~--~~~~~~~~~apE~~~  686 (689)
                      .......  ....+..|+|||++.
T Consensus       158 ~~~~~~~~~~~~~~~~y~aPE~~~  181 (266)
T cd05064         158 KSEAIYTTMSGKSPVLWAAPEAIQ  181 (266)
T ss_pred             cccchhcccCCCCceeecCHHHHh
Confidence            3332111  122345799999863

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.92  E-value=5.5e-25  Score=233.39  Aligned_cols=165  Identities=21%  Similarity=0.265  Sum_probs=136.6

Q ss_pred             ceEeecCCeEEEEEEeC-CCcEEEEEEeccccC-ChhhHHHHHHHHHHHhc-CCCCCcceecEEEEeCCeEEEEEeccCC
Q 005587          515 NLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDR-IRHANIVELKGYCAEHGQRLLIYEYCSN  591 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~-l~HpnIv~l~~~~~~~~~~~lV~Ey~~g  591 (689)
                      +.||+|+||.||+|+.. +++.||||++..... .......+..|..++.. ++||||+++++++.+.+..|+||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~   80 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCC
Confidence            36999999999999765 578999999876432 11233456667777765 5999999999999999999999999999


Q ss_pred             CCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC-Ccc
Q 005587          592 GTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG-SVS  670 (689)
Q Consensus       592 gsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~-~~~  670 (689)
                      |+|.+++..    ...+++..+..++.|+++||+|||+.   +|+||||||+|||++.++.+||+|||+++..... ...
T Consensus        81 g~L~~~l~~----~~~~~~~~~~~~~~qi~~al~~LH~~---~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~  153 (316)
T cd05619          81 GDLMFHIQS----CHKFDLPRATFYAAEIICGLQFLHSK---GIVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDAKT  153 (316)
T ss_pred             CcHHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHhC---CeEeCCCCHHHEEECCCCCEEEccCCcceECCCCCCce
Confidence            999999875    24588999999999999999999987   8999999999999999999999999999864322 222


Q ss_pred             eeecccceEEeccccc
Q 005587          671 QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       671 ~~~~~~~~~~apE~~~  686 (689)
                      ....++..|+|||++.
T Consensus       154 ~~~~gt~~y~aPE~~~  169 (316)
T cd05619         154 CTFCGTPDYIAPEILL  169 (316)
T ss_pred             eeecCCccccCHHHHc
Confidence            3345778899999974

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.92  E-value=4.8e-25  Score=240.43  Aligned_cols=162  Identities=21%  Similarity=0.213  Sum_probs=139.3

Q ss_pred             cCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      +.|++.+.||+|+||.||+|.. .+++.||+|...        ...+.+|++++++++|||||++++++...+..++|||
T Consensus        92 ~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~--------~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~e  163 (391)
T PHA03212         92 AGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ--------RGGTATEAHILRAINHPSIIQLKGTFTYNKFTCLILP  163 (391)
T ss_pred             CCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechh--------hhhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEEe
Confidence            5799999999999999999965 578999999743        2346789999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+. ++|.+++..    ...+++..++.|+.|+++||.|||+.   +|+||||||+|||++.++.+||+|||+|+.....
T Consensus       164 ~~~-~~L~~~l~~----~~~l~~~~~~~i~~qi~~aL~ylH~~---~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~  235 (391)
T PHA03212        164 RYK-TDLYCYLAA----KRNIAICDILAIERSVLRAIQYLHEN---RIIHRDIKAENIFINHPGDVCLGDFGAACFPVDI  235 (391)
T ss_pred             cCC-CCHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChHhEEEcCCCCEEEEeCCcccccccc
Confidence            995 689888865    34688999999999999999999987   8999999999999999999999999999865332


Q ss_pred             C--cceeecccceEEeccccc
Q 005587          668 S--VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~--~~~~~~~~~~~~apE~~~  686 (689)
                      .  ......++..|+|||++.
T Consensus       236 ~~~~~~~~~gt~~y~aPE~~~  256 (391)
T PHA03212        236 NANKYYGWAGTIATNAPELLA  256 (391)
T ss_pred             cccccccccCccCCCChhhhc
Confidence            2  222346788999999984

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.92  E-value=5e-25  Score=233.74  Aligned_cols=165  Identities=19%  Similarity=0.250  Sum_probs=136.5

Q ss_pred             ceEeecCCeEEEEEEeC-CCcEEEEEEeccccCC-hhhHHHHHHHHHHHhc-CCCCCcceecEEEEeCCeEEEEEeccCC
Q 005587          515 NLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASS-QQKDDEFLELVNNIDR-IRHANIVELKGYCAEHGQRLLIYEYCSN  591 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~~~~~~e~~~l~~-l~HpnIv~l~~~~~~~~~~~lV~Ey~~g  591 (689)
                      +.||+|+||.||+|+.. +|+.||+|.+...... ......+..|.+++.. .+||||+++++++...+..|+||||+.+
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~   80 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCC
Confidence            46999999999999765 6889999998754321 1233456667777765 4899999999999999999999999999


Q ss_pred             CCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC-Ccc
Q 005587          592 GTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG-SVS  670 (689)
Q Consensus       592 gsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~-~~~  670 (689)
                      |+|.+++...    ..+++..+..++.|+++||+|||+.   +|+||||||+|||++.++.+||+|||+++..... ...
T Consensus        81 g~L~~~i~~~----~~~~~~~~~~~~~qi~~~l~~lH~~---~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~  153 (316)
T cd05620          81 GDLMFHIQDK----GRFDLYRATFYAAEIVCGLQFLHSK---GIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDNRA  153 (316)
T ss_pred             CcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEECCCCCEEeCccCCCeecccCCCce
Confidence            9999998752    4578899999999999999999987   8999999999999999999999999999854322 222


Q ss_pred             eeecccceEEeccccc
Q 005587          671 QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       671 ~~~~~~~~~~apE~~~  686 (689)
                      ....++..|+|||++.
T Consensus       154 ~~~~gt~~y~aPE~~~  169 (316)
T cd05620         154 STFCGTPDYIAPEILQ  169 (316)
T ss_pred             eccCCCcCccCHHHHc
Confidence            3345788999999974

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.92  E-value=3.3e-25  Score=245.44  Aligned_cols=169  Identities=24%  Similarity=0.299  Sum_probs=138.4

Q ss_pred             ccCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeC-------
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEH-------  579 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~-------  579 (689)
                      ..+|.+.+.||+|+||.||+|.. .+++.||||++....      ....+|+.+++.++|||||++++++...       
T Consensus        65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~------~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~  138 (440)
T PTZ00036         65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP------QYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEK  138 (440)
T ss_pred             CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc------chHHHHHHHHHhcCCCCCcceeeeEeecccccCCC
Confidence            35789999999999999999975 468999999885432      2234789999999999999999887542       


Q ss_pred             -CeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCC-cEEEEe
Q 005587          580 -GQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDL-AVSVSD  657 (689)
Q Consensus       580 -~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~-~~kl~D  657 (689)
                       ...++||||+++ +|.+++.........+++..+..|+.||++||.|||+.   +|+||||||+|||++.++ .+||+|
T Consensus       139 ~~~l~lvmE~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~---~IiHrDLKp~NILl~~~~~~vkL~D  214 (440)
T PTZ00036        139 NIFLNVVMEFIPQ-TVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSK---FICHRDLKPQNLLIDPNTHTLKLCD  214 (440)
T ss_pred             ceEEEEEEecCCc-cHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCcCHHHEEEcCCCCceeeec
Confidence             246799999975 78777754333345789999999999999999999997   899999999999999654 799999


Q ss_pred             ecCCccccCCCcceeecccceEEeccccc
Q 005587          658 CGLAPLISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       658 FGla~~~~~~~~~~~~~~~~~~~apE~~~  686 (689)
                      ||+|+.+..+.......++..|+|||++.
T Consensus       215 FGla~~~~~~~~~~~~~~t~~y~aPE~~~  243 (440)
T PTZ00036        215 FGSAKNLLAGQRSVSYICSRFYRAPELML  243 (440)
T ss_pred             cccchhccCCCCcccCCCCcCccCHHHhc
Confidence            99999876655544456788999999874

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.92  E-value=7.4e-25  Score=228.87  Aligned_cols=171  Identities=25%  Similarity=0.308  Sum_probs=145.2

Q ss_pred             CCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCC-hhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          511 FSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASS-QQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       511 f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~-~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      |+..+.||+|+||.||++.. .+++.||||.+...... ......+.+|+.++++++|+||+.+++.+...+..++||||
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTL   81 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEEe
Confidence            66778999999999999965 46899999998654322 22345677899999999999999999999999999999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      +++|+|.+++....  ...+++..+..++.|++.||.|||+.   +|+||||||+||++++++.++|+|||++.....+.
T Consensus        82 ~~g~~L~~~l~~~~--~~~l~~~~~~~~~~qi~~~l~~lH~~---~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~  156 (285)
T cd05630          82 MNGGDLKFHIYHMG--EAGFEEGRAVFYAAEICCGLEDLHQE---RIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQ  156 (285)
T ss_pred             cCCCcHHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHEEECCCCCEEEeeccceeecCCCc
Confidence            99999999886432  34588999999999999999999987   89999999999999999999999999998765544


Q ss_pred             cceeecccceEEeccccc
Q 005587          669 VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       669 ~~~~~~~~~~~~apE~~~  686 (689)
                      ......++..|+|||++.
T Consensus       157 ~~~~~~g~~~y~aPE~~~  174 (285)
T cd05630         157 TIKGRVGTVGYMAPEVVK  174 (285)
T ss_pred             cccCCCCCccccChHHHc
Confidence            333346778899999974

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.92  E-value=6.5e-25  Score=228.25  Aligned_cols=165  Identities=24%  Similarity=0.303  Sum_probs=140.5

Q ss_pred             EeecCCeEEEEEEeC-CCcEEEEEEeccccCC-hhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccCCCCH
Q 005587          517 IGAGMLGSVYRAQLP-DGKLLAVKKLDKRASS-QQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTL  594 (689)
Q Consensus       517 iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~ggsL  594 (689)
                      ||+|+||.||+++.. +|+.||+|.+...... ......+..|++++++++||||+++++++......++||||++||+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L   80 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDL   80 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCH
Confidence            699999999999754 6899999998654322 12344566799999999999999999999999999999999999999


Q ss_pred             HHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCcceeec
Q 005587          595 QDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSH  674 (689)
Q Consensus       595 ~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~  674 (689)
                      .+++....  ...+++..+..++.|++.||+|||+.   +|+||||||+||++++++.++|+|||++..+..........
T Consensus        81 ~~~~~~~~--~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~  155 (277)
T cd05607          81 KYHIYNVG--ERGLEMERVIHYSAQITCGILHLHSM---DIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKTITQRA  155 (277)
T ss_pred             HHHHHhcc--ccCCCHHHHHHHHHHHHHHHHHHHHC---CEEEccCChHhEEEcCCCCEEEeeceeeeecCCCceeeccC
Confidence            98886532  34588999999999999999999987   89999999999999999999999999998876655444456


Q ss_pred             ccceEEeccccc
Q 005587          675 NLTIMRAGGVTH  686 (689)
Q Consensus       675 ~~~~~~apE~~~  686 (689)
                      ++..|+|||++.
T Consensus       156 ~~~~y~aPE~~~  167 (277)
T cd05607         156 GTNGYMAPEILK  167 (277)
T ss_pred             CCCCccCHHHHc
Confidence            778899999874

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.92  E-value=4.2e-25  Score=256.22  Aligned_cols=181  Identities=18%  Similarity=0.316  Sum_probs=150.7

Q ss_pred             hhccCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEe--CCeE
Q 005587          506 QYTNSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAE--HGQR  582 (689)
Q Consensus       506 ~~~~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~--~~~~  582 (689)
                      ...++|.+.+.||+|+||.||+|... ++..||+|.+............|..|+.++++++|||||+++++|..  ...+
T Consensus        10 ~~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~l   89 (1021)
T PTZ00266         10 SRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQKL   89 (1021)
T ss_pred             cccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCEE
Confidence            34568999999999999999999654 57889999987655555556788999999999999999999998865  4578


Q ss_pred             EEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCC----CCcEEecccCCCeEecC---------
Q 005587          583 LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQ----PPIVHRNFKSANILLDD---------  649 (689)
Q Consensus       583 ~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~----~~iiHrDlKp~NILl~~---------  649 (689)
                      ||||||+++|+|.++|.........+++..++.|+.||+.||.|||+.+.    .+||||||||+||||+.         
T Consensus        90 yIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~  169 (1021)
T PTZ00266         90 YILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKIT  169 (1021)
T ss_pred             EEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCcccccccc
Confidence            99999999999999997533333568999999999999999999998531    35999999999999964         


Q ss_pred             --------CCcEEEEeecCCccccCCCcceeecccceEEeccccc
Q 005587          650 --------DLAVSVSDCGLAPLISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       650 --------~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~apE~~~  686 (689)
                              .+.+||+|||+++.+..........++..|+|||++.
T Consensus       170 ~~~~n~ng~~iVKLsDFGlAr~l~~~s~~~s~vGTp~YmAPEvL~  214 (1021)
T PTZ00266        170 AQANNLNGRPIAKIGDFGLSKNIGIESMAHSCVGTPYYWSPELLL  214 (1021)
T ss_pred             ccccccCCCCceEEccCCccccccccccccccCCCccccCHHHHh
Confidence                    2348999999999886655555567888999999874

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.92  E-value=8.3e-25  Score=241.94  Aligned_cols=163  Identities=18%  Similarity=0.199  Sum_probs=138.8

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      ..|.+.+.||+|+||.||+|... +++.||||....        ..+.+|++++++++|+|||++++++...+..++|||
T Consensus       169 ~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~--------~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e  240 (461)
T PHA03211        169 LGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGWY--------ASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLP  240 (461)
T ss_pred             CCeEEEEEEccCCCeEEEEEEECCCCCEEEEecccc--------cCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEE
Confidence            36889999999999999999765 588999996421        235689999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+. ++|.+++...   ...++|.+++.|+.|+++||.|||+.   +|+||||||+|||++.++.+||+|||+++.+...
T Consensus       241 ~~~-~~L~~~l~~~---~~~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~  313 (461)
T PHA03211        241 KYR-SDLYTYLGAR---LRPLGLAQVTAVARQLLSAIDYIHGE---GIIHRDIKTENVLVNGPEDICLGDFGAACFARGS  313 (461)
T ss_pred             ccC-CCHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHHC---CEEECcCCHHHEEECCCCCEEEcccCCceecccc
Confidence            995 6898888643   23689999999999999999999987   8999999999999999999999999999876543


Q ss_pred             Cc---ceeecccceEEeccccc
Q 005587          668 SV---SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~---~~~~~~~~~~~apE~~~  686 (689)
                      ..   .....++..|+|||++.
T Consensus       314 ~~~~~~~~~~GT~~Y~APE~~~  335 (461)
T PHA03211        314 WSTPFHYGIAGTVDTNAPEVLA  335 (461)
T ss_pred             cccccccccCCCcCCcCHHHHc
Confidence            21   12245788899999874

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.92  E-value=7.8e-25  Score=239.10  Aligned_cols=175  Identities=25%  Similarity=0.362  Sum_probs=143.1

Q ss_pred             ccCCCccceEeecCCeEEEEEEeC------CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCC-CCCcceecEEEEeCC
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQLP------DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR-HANIVELKGYCAEHG  580 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~-HpnIv~l~~~~~~~~  580 (689)
                      .+.|.+.++||+|+||.||+|...      .+..||||++..... ....+.+.+|+++++++. |||||+++++|...+
T Consensus        36 ~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~-~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~~  114 (400)
T cd05105          36 RDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTAR-SSEKQALMSELKIMTHLGPHLNIVNLLGACTKSG  114 (400)
T ss_pred             ccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCC-hHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccCC
Confidence            357888999999999999999642      235799999865432 334567899999999996 999999999999999


Q ss_pred             eEEEEEeccCCCCHHHHHhcCcc---------------------------------------------------------
Q 005587          581 QRLLIYEYCSNGTLQDMLHSDDE---------------------------------------------------------  603 (689)
Q Consensus       581 ~~~lV~Ey~~ggsL~~~l~~~~~---------------------------------------------------------  603 (689)
                      ..|+|||||++|+|.++++....                                                         
T Consensus       115 ~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (400)
T cd05105         115 PIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYVPMLEI  194 (400)
T ss_pred             ceEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccccchhhhh
Confidence            99999999999999999875311                                                         


Q ss_pred             -----------------------------------cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEec
Q 005587          604 -----------------------------------LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLD  648 (689)
Q Consensus       604 -----------------------------------~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~  648 (689)
                                                         ....+++..++.++.|+++||.|||+.   +|+||||||+|||++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivH~dikp~Nill~  271 (400)
T cd05105         195 KEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLASK---NCVHRDLAARNVLLA  271 (400)
T ss_pred             hhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChHhEEEe
Confidence                                               013478889999999999999999987   899999999999999


Q ss_pred             CCCcEEEEeecCCccccCCCcc---eeecccceEEeccccc
Q 005587          649 DDLAVSVSDCGLAPLISSGSVS---QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       649 ~~~~~kl~DFGla~~~~~~~~~---~~~~~~~~~~apE~~~  686 (689)
                      +++.+||+|||+++.+......   ....++..|+|||++.
T Consensus       272 ~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~  312 (400)
T cd05105         272 QGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIF  312 (400)
T ss_pred             CCCEEEEEeCCcceeccccccccccCCcCCCcceEChhhhc
Confidence            9999999999999876443221   1123345699999874

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.92  E-value=8.8e-25  Score=228.25  Aligned_cols=171  Identities=25%  Similarity=0.286  Sum_probs=145.2

Q ss_pred             CCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCCh-hhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          511 FSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQ-QKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       511 f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~-~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      |+..+.||+|+||+||+|.. .+++.||+|.+....... .....+.+|++++++++|+||+.+++++...+..++||||
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTI   81 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEe
Confidence            56678899999999999965 468999999986543222 2345578899999999999999999999999999999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      +++|+|.+++....  ...+++..+..++.|++.||.|||+.   +|+||||||+||++++++.+||+|||++.......
T Consensus        82 ~~~~~L~~~~~~~~--~~~~~~~~~~~~~~ql~~~l~~lH~~---~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~  156 (285)
T cd05632          82 MNGGDLKFHIYNMG--NPGFEEERALFYAAEILCGLEDLHRE---NTVYRDLKPENILLDDYGHIRISDLGLAVKIPEGE  156 (285)
T ss_pred             ccCccHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCCHHHEEECCCCCEEEecCCcceecCCCC
Confidence            99999998886532  34689999999999999999999987   89999999999999999999999999998765544


Q ss_pred             cceeecccceEEeccccc
Q 005587          669 VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       669 ~~~~~~~~~~~~apE~~~  686 (689)
                      ......++..|+|||++.
T Consensus       157 ~~~~~~g~~~~~aPE~~~  174 (285)
T cd05632         157 SIRGRVGTVGYMAPEVLN  174 (285)
T ss_pred             cccCCCCCcCccChHHhc
Confidence            433446778899999974

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.92  E-value=5.6e-25  Score=238.80  Aligned_cols=169  Identities=21%  Similarity=0.290  Sum_probs=142.3

Q ss_pred             CCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCC-----eEE
Q 005587          510 SFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHG-----QRL  583 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~-----~~~  583 (689)
                      +|++.+.||+|+||.||+|.. .+|+.||||++..........+.+.+|+++++.++||||+++++++...+     ..|
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~   80 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIY   80 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEE
Confidence            477889999999999999975 57899999998654433445567889999999999999999999998776     789


Q ss_pred             EEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcc
Q 005587          584 LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPL  663 (689)
Q Consensus       584 lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~  663 (689)
                      +||||+. ++|.+++..    ...+++..+..++.||+.||.|||+.   +|+||||||+|||++.++.+||+|||+++.
T Consensus        81 lv~e~~~-~~l~~~~~~----~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~  152 (372)
T cd07853          81 VVTELMQ-SDLHKIIVS----PQPLSSDHVKVFLYQILRGLKYLHSA---GILHRDIKPGNLLVNSNCVLKICDFGLARV  152 (372)
T ss_pred             EEeeccc-cCHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChHHEEECCCCCEEeccccceee
Confidence            9999996 588888764    34689999999999999999999987   899999999999999999999999999987


Q ss_pred             ccCCCcc--eeecccceEEeccccc
Q 005587          664 ISSGSVS--QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       664 ~~~~~~~--~~~~~~~~~~apE~~~  686 (689)
                      .......  ....++..|+|||++.
T Consensus       153 ~~~~~~~~~~~~~~~~~y~aPE~~~  177 (372)
T cd07853         153 EEPDESKHMTQEVVTQYYRAPEILM  177 (372)
T ss_pred             cccCccccCCCCCcCCCcCCHHHHc
Confidence            6443221  1234567899999874

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=5.7e-25  Score=234.72  Aligned_cols=163  Identities=26%  Similarity=0.279  Sum_probs=134.0

Q ss_pred             EeecCCeEEEEEEeC-CCcEEEEEEeccccCC-hhhHHHHHHHHHHHhcC---CCCCcceecEEEEeCCeEEEEEeccCC
Q 005587          517 IGAGMLGSVYRAQLP-DGKLLAVKKLDKRASS-QQKDDEFLELVNNIDRI---RHANIVELKGYCAEHGQRLLIYEYCSN  591 (689)
Q Consensus       517 iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~~~~~~e~~~l~~l---~HpnIv~l~~~~~~~~~~~lV~Ey~~g  591 (689)
                      ||+|+||.||+|+.. +++.||||++.+.... ......+..|..++...   +||||+++++++...+..|+||||+++
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~   80 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSG   80 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCC
Confidence            699999999999754 6899999998653221 12233445566666554   699999999999999999999999999


Q ss_pred             CCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC-Ccc
Q 005587          592 GTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG-SVS  670 (689)
Q Consensus       592 gsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~-~~~  670 (689)
                      |+|.+++..    ...+++..+..++.||++||+|||+.   +|+||||||+|||+++++.+||+|||+++..... ...
T Consensus        81 g~L~~~l~~----~~~~~~~~~~~~~~qil~al~~LH~~---~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~~  153 (330)
T cd05586          81 GELFWHLQK----EGRFSEDRAKFYIAELVLALEHLHKY---DIVYRDLKPENILLDATGHIALCDFGLSKANLTDNKTT  153 (330)
T ss_pred             ChHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeEECCCCCEEEecCCcCcCCCCCCCCc
Confidence            999998875    34688999999999999999999987   8999999999999999999999999999864332 223


Q ss_pred             eeecccceEEeccccc
Q 005587          671 QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       671 ~~~~~~~~~~apE~~~  686 (689)
                      ....++..|+|||++.
T Consensus       154 ~~~~gt~~y~aPE~~~  169 (330)
T cd05586         154 NTFCGTTEYLAPEVLL  169 (330)
T ss_pred             cCccCCccccCHHHHc
Confidence            3345788999999874

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.92  E-value=8.3e-25  Score=252.82  Aligned_cols=175  Identities=24%  Similarity=0.270  Sum_probs=145.6

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCC-hhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASS-QQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      ++|++.++||+|+||.||+|... +|+.||||++...... ....+.|.+|++++++++||||+++++++...+..++||
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVM   81 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTM   81 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEE
Confidence            46888999999999999999764 6899999998754322 234567899999999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCc-------ccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeec
Q 005587          587 EYCSNGTLQDMLHSDD-------ELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCG  659 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~-------~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG  659 (689)
                      ||++||+|.+++....       .....+++..+++++.||++||+|||+.   +|+||||||+|||++.++.+||+|||
T Consensus        82 EY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~---GIIHRDLKPeNILLd~dg~vKLiDFG  158 (932)
T PRK13184         82 PYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSK---GVLHRDLKPDNILLGLFGEVVILDWG  158 (932)
T ss_pred             EcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHC---CccccCCchheEEEcCCCCEEEEecC
Confidence            9999999999986421       1123467788899999999999999987   89999999999999999999999999


Q ss_pred             CCccccCCC-------------------cceeecccceEEeccccc
Q 005587          660 LAPLISSGS-------------------VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       660 la~~~~~~~-------------------~~~~~~~~~~~~apE~~~  686 (689)
                      +|+......                   ......++..|+|||++.
T Consensus       159 LAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~  204 (932)
T PRK13184        159 AAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLL  204 (932)
T ss_pred             cceecccccccccccccccccccccccccCCCCCCCCCCCCHHHhc
Confidence            998762111                   011134788899999874

>PHA02988 hypothetical protein; Provisional

Probab=99.92  E-value=8.2e-25  Score=228.32  Aligned_cols=163  Identities=22%  Similarity=0.361  Sum_probs=139.3

Q ss_pred             ceEeecCCeEEEEEEeCCCcEEEEEEeccccCCh-hhHHHHHHHHHHHhcCCCCCcceecEEEEe----CCeEEEEEecc
Q 005587          515 NLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQ-QKDDEFLELVNNIDRIRHANIVELKGYCAE----HGQRLLIYEYC  589 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~-~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~----~~~~~lV~Ey~  589 (689)
                      ..||+|++|.||+|.+ +|+.||||.+....... ...+.|.+|++++++++|||||++++++.+    ....++||||+
T Consensus        26 ~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~Ey~  104 (283)
T PHA02988         26 VLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILEYC  104 (283)
T ss_pred             eEEeeCCceEEEEEEE-CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEEeC
Confidence            5799999999999988 78999999987643322 224678899999999999999999999977    45789999999


Q ss_pred             CCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCc
Q 005587          590 SNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSV  669 (689)
Q Consensus       590 ~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~  669 (689)
                      ++|+|.+++...    ..++|....+++.|++.||.|||...  +++||||||+|||+++++.+||+|||+++.+.... 
T Consensus       105 ~~g~L~~~l~~~----~~~~~~~~~~i~~~i~~~l~~lH~~~--~~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~~~~-  177 (283)
T PHA02988        105 TRGYLREVLDKE----KDLSFKTKLDMAIDCCKGLYNLYKYT--NKPYKNLTSVSFLVTENYKLKIICHGLEKILSSPP-  177 (283)
T ss_pred             CCCcHHHHHhhC----CCCChhHHHHHHHHHHHHHHHHHhcC--CCCCCcCChhhEEECCCCcEEEcccchHhhhcccc-
Confidence            999999999763    46889999999999999999999742  68899999999999999999999999999775433 


Q ss_pred             ceeecccceEEeccccc
Q 005587          670 SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       670 ~~~~~~~~~~~apE~~~  686 (689)
                       ....++..|+|||++.
T Consensus       178 -~~~~~~~~y~aPE~~~  193 (283)
T PHA02988        178 -FKNVNFMVYFSYKMLN  193 (283)
T ss_pred             -ccccCcccccCHHHhh
Confidence             2345678899999984

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.92  E-value=6.4e-25  Score=237.19  Aligned_cols=169  Identities=23%  Similarity=0.270  Sum_probs=142.5

Q ss_pred             ccCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCC------
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHG------  580 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~------  580 (689)
                      .++|++.+.||+|+||.||+|.. .+|+.||||++............+.+|+.+++.++||||+++++++...+      
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~   99 (359)
T cd07876          20 LKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEFQ   99 (359)
T ss_pred             hhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCccccc
Confidence            46889999999999999999965 46899999999765444455677889999999999999999999986543      


Q ss_pred             eEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecC
Q 005587          581 QRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGL  660 (689)
Q Consensus       581 ~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGl  660 (689)
                      ..|+||||+.+ +|.+.++.      .+++..+..++.|+++||.|||+.   +|+||||||+|||++.++.+||+|||+
T Consensus       100 ~~~lv~e~~~~-~l~~~~~~------~~~~~~~~~~~~qi~~~L~~LH~~---~ivHrDlkp~NIl~~~~~~~kl~Dfg~  169 (359)
T cd07876         100 DVYLVMELMDA-NLCQVIHM------ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGL  169 (359)
T ss_pred             eeEEEEeCCCc-CHHHHHhc------cCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEEecCCC
Confidence            57999999965 67666642      478888999999999999999987   899999999999999999999999999


Q ss_pred             CccccCCCcceeecccceEEeccccc
Q 005587          661 APLISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       661 a~~~~~~~~~~~~~~~~~~~apE~~~  686 (689)
                      ++............++..|+|||++.
T Consensus       170 a~~~~~~~~~~~~~~t~~y~aPE~~~  195 (359)
T cd07876         170 ARTACTNFMMTPYVVTRYYRAPEVIL  195 (359)
T ss_pred             ccccccCccCCCCcccCCCCCchhcc
Confidence            98765544444456678899999874

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.92  E-value=8.9e-25  Score=231.73  Aligned_cols=170  Identities=23%  Similarity=0.395  Sum_probs=140.9

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCc----EEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGK----LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRL  583 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~----~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~  583 (689)
                      .+|++.+.||+|+||.||+|++. +|.    .||+|.+.... .....+++.+|+.+++.++||||++++++|... ..+
T Consensus         7 ~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~-~~~   84 (316)
T cd05108           7 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT-SPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQ   84 (316)
T ss_pred             hhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccC-CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCC-Cce
Confidence            46888999999999999999753 343    48999986432 234556788999999999999999999999865 577


Q ss_pred             EEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcc
Q 005587          584 LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPL  663 (689)
Q Consensus       584 lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~  663 (689)
                      +|+||+++|+|.+++...   ...+++...+.++.||++||+|||+.   +|+||||||+|||+++++.+||+|||+++.
T Consensus        85 ~v~e~~~~g~l~~~l~~~---~~~~~~~~~~~~~~qi~~~L~~LH~~---~iiH~dlkp~Nill~~~~~~kl~DfG~a~~  158 (316)
T cd05108          85 LITQLMPFGCLLDYVREH---KDNIGSQYLLNWCVQIAKGMNYLEER---RLVHRDLAARNVLVKTPQHVKITDFGLAKL  158 (316)
T ss_pred             eeeecCCCCCHHHHHHhc---cccCCHHHHHHHHHHHHHHHHHHHhc---CeeccccchhheEecCCCcEEEcccccccc
Confidence            999999999999999864   23588999999999999999999987   899999999999999999999999999998


Q ss_pred             ccCCCcceeec---ccceEEeccccc
Q 005587          664 ISSGSVSQVSH---NLTIMRAGGVTH  686 (689)
Q Consensus       664 ~~~~~~~~~~~---~~~~~~apE~~~  686 (689)
                      +..........   .+..|+|||.+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~y~apE~~~  184 (316)
T cd05108         159 LGADEKEYHAEGGKVPIKWMALESIL  184 (316)
T ss_pred             ccCCCcceeccCCccceeecChHHhc
Confidence            76544332222   234699999874

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.92  E-value=6.6e-26  Score=233.23  Aligned_cols=173  Identities=27%  Similarity=0.301  Sum_probs=154.1

Q ss_pred             cCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCCh-hhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQ-QKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~-~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      +.|...++||+|+||.||.++. .+|+.+|.|++.+..... ..+...+.|-.+|.++..+.||.+--.|++.+.+++||
T Consensus       185 n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LClVL  264 (591)
T KOG0986|consen  185 NTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDALCLVL  264 (591)
T ss_pred             cceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceEEEE
Confidence            5688899999999999999965 479999999987654432 34556678999999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      ..|.||||.-+|...+  ...+++..++-|+.+|+.||++||..   +||+|||||+|||+|+.|+++|+|.|||..+.+
T Consensus       265 tlMNGGDLkfHiyn~g--~~gF~e~ra~FYAAEi~cGLehlH~~---~iVYRDLKPeNILLDd~GhvRISDLGLAvei~~  339 (591)
T KOG0986|consen  265 TLMNGGDLKFHIYNHG--NPGFDEQRARFYAAEIICGLEHLHRR---RIVYRDLKPENILLDDHGHVRISDLGLAVEIPE  339 (591)
T ss_pred             EeecCCceeEEeeccC--CCCCchHHHHHHHHHHHhhHHHHHhc---ceeeccCChhheeeccCCCeEeeccceEEecCC
Confidence            9999999988776544  46799999999999999999999998   899999999999999999999999999999999


Q ss_pred             CCcceeecccceEEeccccc
Q 005587          667 GSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 ~~~~~~~~~~~~~~apE~~~  686 (689)
                      +.....-.+|.+||||||+.
T Consensus       340 g~~~~~rvGT~GYMAPEvl~  359 (591)
T KOG0986|consen  340 GKPIRGRVGTVGYMAPEVLQ  359 (591)
T ss_pred             CCccccccCcccccCHHHHc
Confidence            88777668999999999985

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=6.7e-26  Score=224.00  Aligned_cols=172  Identities=26%  Similarity=0.307  Sum_probs=150.3

Q ss_pred             cCCCccceEeecCCeEEEEEE-eCCCcEEEEEEeccccCCh-hhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQ-QKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~-~~~g~~vAvK~l~~~~~~~-~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      ++|+..++||+|.||.|-+++ ..+|+.+|+|++++...-. .....-+.|-++|+..+||.+..+.-.|...+.+++||
T Consensus       168 ~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlCFVM  247 (516)
T KOG0690|consen  168 EDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLCFVM  247 (516)
T ss_pred             chhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEEEEE
Confidence            567888999999999999995 5579999999998775432 23344567889999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcc-cc
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPL-IS  665 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~-~~  665 (689)
                      ||..||.|+-+|..    .+.+++...+-+...|..||.|||+.   +||.||||.+|+|+|.+|++||+||||++. +.
T Consensus       248 eyanGGeLf~HLsr----er~FsE~RtRFYGaEIvsAL~YLHs~---~ivYRDlKLENLlLDkDGHIKitDFGLCKE~I~  320 (516)
T KOG0690|consen  248 EYANGGELFFHLSR----ERVFSEDRTRFYGAEIVSALGYLHSR---NIVYRDLKLENLLLDKDGHIKITDFGLCKEEIK  320 (516)
T ss_pred             EEccCceEeeehhh----hhcccchhhhhhhHHHHHHhhhhhhC---CeeeeechhhhheeccCCceEeeecccchhccc
Confidence            99999999988865    45688888888999999999999997   899999999999999999999999999985 45


Q ss_pred             CCCcceeecccceEEecccccc
Q 005587          666 SGSVSQVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       666 ~~~~~~~~~~~~~~~apE~~~~  687 (689)
                      .+.....-++++.|.||||+.+
T Consensus       321 ~g~t~kTFCGTPEYLAPEVleD  342 (516)
T KOG0690|consen  321 YGDTTKTFCGTPEYLAPEVLED  342 (516)
T ss_pred             ccceeccccCChhhcCchhhcc
Confidence            5666677889999999999954

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.92  E-value=1e-24  Score=231.57  Aligned_cols=165  Identities=21%  Similarity=0.276  Sum_probs=137.9

Q ss_pred             ceEeecCCeEEEEEEeC-CCcEEEEEEeccccC-ChhhHHHHHHHHHHHhcC-CCCCcceecEEEEeCCeEEEEEeccCC
Q 005587          515 NLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRI-RHANIVELKGYCAEHGQRLLIYEYCSN  591 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~~~~~~lV~Ey~~g  591 (689)
                      +.||+|+||.||+|+.. +++.||||++.+... .......+..|.+++..+ +||||+++++++...+..|+||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~   80 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNG   80 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            46999999999999765 588999999875432 123345667888888877 799999999999999999999999999


Q ss_pred             CCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC-Ccc
Q 005587          592 GTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG-SVS  670 (689)
Q Consensus       592 gsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~-~~~  670 (689)
                      |+|.+++...    ..+++..+..++.|++.||.|||+.   +|+||||||+|||+++++.+||+|||+++..... ...
T Consensus        81 ~~L~~~~~~~----~~l~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~  153 (318)
T cd05570          81 GDLMFHIQRS----GRFDEPRARFYAAEIVLGLQFLHER---GIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGVTT  153 (318)
T ss_pred             CCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHhC---CeEccCCCHHHeEECCCCcEEecccCCCeecCcCCCcc
Confidence            9999988753    3689999999999999999999987   8999999999999999999999999999764222 222


Q ss_pred             eeecccceEEeccccc
Q 005587          671 QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       671 ~~~~~~~~~~apE~~~  686 (689)
                      ....++..|+|||++.
T Consensus       154 ~~~~g~~~y~aPE~~~  169 (318)
T cd05570         154 STFCGTPDYIAPEILS  169 (318)
T ss_pred             cceecCccccCHHHhc
Confidence            2345678899999974

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.92  E-value=2.2e-24  Score=232.72  Aligned_cols=164  Identities=19%  Similarity=0.227  Sum_probs=140.1

Q ss_pred             ccCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      ..+|.+.+.||+|+||.||+|... +++.||+|+....        ....|+.++++++||||+++++++...+..++||
T Consensus        65 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~--------~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  136 (357)
T PHA03209         65 SLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKG--------TTLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVL  136 (357)
T ss_pred             hcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCcc--------ccHHHHHHHHhCCCCCCcChhheEEeCCeeEEEE
Confidence            357999999999999999999765 5788999975432        2346888999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      ||+. ++|.+++...   ...+++..++.|+.||+.||.|||+.   +|+||||||+|||++.++.+||+|||+++....
T Consensus       137 e~~~-~~l~~~l~~~---~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~  209 (357)
T PHA03209        137 PHYS-SDLYTYLTKR---SRPLPIDQALIIEKQILEGLRYLHAQ---RIIHRDVKTENIFINDVDQVCIGDLGAAQFPVV  209 (357)
T ss_pred             EccC-CcHHHHHHhc---cCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEEecCcccccccc
Confidence            9995 6888888643   34689999999999999999999987   899999999999999999999999999987554


Q ss_pred             CCcceeecccceEEeccccc
Q 005587          667 GSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 ~~~~~~~~~~~~~~apE~~~  686 (689)
                      ........++..|+|||++.
T Consensus       210 ~~~~~~~~gt~~y~aPE~~~  229 (357)
T PHA03209        210 APAFLGLAGTVETNAPEVLA  229 (357)
T ss_pred             CcccccccccccccCCeecC
Confidence            44333456788899999974

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.92  E-value=2e-25  Score=218.99  Aligned_cols=169  Identities=20%  Similarity=0.222  Sum_probs=141.4

Q ss_pred             hccCCCc-cceEeecCCeEEEEEE-eCCCcEEEEEEeccccCChhhHHHHHHHHHHH-hcCCCCCcceecEEEEe----C
Q 005587          507 YTNSFSQ-ENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNI-DRIRHANIVELKGYCAE----H  579 (689)
Q Consensus       507 ~~~~f~~-~~~iG~G~~G~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l-~~l~HpnIv~l~~~~~~----~  579 (689)
                      .+++|.+ .++||-|-.|.|..+. ..+|+.+|+|++...       ...++|++.. ..-.|||||.++++|++    .
T Consensus        59 itedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds-------~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~r  131 (400)
T KOG0604|consen   59 ITEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLDS-------PKARREVELHWMASGHPHIVSIIDVYENSYQGR  131 (400)
T ss_pred             chhhheehhhhhccccCCceEEEEeccchhhhHHHHHhcC-------HHHHhHhhhhhhhcCCCceEEeehhhhhhccCc
Confidence            3456654 3679999999999995 457999999998543       2345666653 44479999999999875    4


Q ss_pred             CeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecC---CCcEEEE
Q 005587          580 GQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDD---DLAVSVS  656 (689)
Q Consensus       580 ~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~---~~~~kl~  656 (689)
                      ..+.+|||+|+||.|+..+.+++  ...+++.++..|+.||+.|+.|||+.   +|.||||||+|+|...   +..+||+
T Consensus       132 kcLLiVmE~meGGeLfsriq~~g--~~afTErea~eI~~qI~~Av~~lH~~---nIAHRDlKpENLLyt~t~~na~lKLt  206 (400)
T KOG0604|consen  132 KCLLIVMECMEGGELFSRIQDRG--DQAFTEREASEIMKQIGLAVRYLHSM---NIAHRDLKPENLLYTTTSPNAPLKLT  206 (400)
T ss_pred             eeeEeeeecccchHHHHHHHHcc--cccchHHHHHHHHHHHHHHHHHHHhc---chhhccCChhheeeecCCCCcceEec
Confidence            67889999999999999998765  56799999999999999999999998   8999999999999964   5578999


Q ss_pred             eecCCccccCCCcceeecccceEEecccccc
Q 005587          657 DCGLAPLISSGSVSQVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       657 DFGla~~~~~~~~~~~~~~~~~~~apE~~~~  687 (689)
                      |||+|+.-.+...-+..+-|+||.|||++..
T Consensus       207 DfGFAK~t~~~~~L~TPc~TPyYvaPevlg~  237 (400)
T KOG0604|consen  207 DFGFAKETQEPGDLMTPCFTPYYVAPEVLGP  237 (400)
T ss_pred             ccccccccCCCccccCCcccccccCHHHhCc
Confidence            9999999887777777889999999999953

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.92  E-value=1.1e-24  Score=223.58  Aligned_cols=169  Identities=21%  Similarity=0.372  Sum_probs=143.1

Q ss_pred             cCCCccceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      ++|++.+.||+|+||.||+++++++..+|+|.+.....   ....+.+|++++++++||||+++++++...+..++||||
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~   80 (256)
T cd05114           4 SELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGAM---SEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEF   80 (256)
T ss_pred             HHcEEeeEecCCcCceEEEEEeccCceEEEEecccCCc---cHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEEEc
Confidence            35777889999999999999988888999998764432   245788999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      +++|+|.++++...   ..+++..++.++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++......
T Consensus        81 ~~~~~L~~~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~  154 (256)
T cd05114          81 MENGCLLNYLRQRQ---GKLSKDMLLSMCQDVCEGMEYLERN---SFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDE  154 (256)
T ss_pred             CCCCcHHHHHHhCc---cCCCHHHHHHHHHHHHHHHHHHHHC---CccccccCcceEEEcCCCeEEECCCCCccccCCCc
Confidence            99999999987532   3588999999999999999999987   89999999999999999999999999998765433


Q ss_pred             ccee--ecccceEEeccccc
Q 005587          669 VSQV--SHNLTIMRAGGVTH  686 (689)
Q Consensus       669 ~~~~--~~~~~~~~apE~~~  686 (689)
                      ....  ......|+|||++.
T Consensus       155 ~~~~~~~~~~~~y~aPE~~~  174 (256)
T cd05114         155 YTSSSGAKFPVKWSPPEVFN  174 (256)
T ss_pred             eeccCCCCCchhhCChhhcc
Confidence            2211  12234699999874

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.92  E-value=9.5e-25  Score=235.45  Aligned_cols=170  Identities=21%  Similarity=0.251  Sum_probs=143.5

Q ss_pred             hccCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeC------
Q 005587          507 YTNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEH------  579 (689)
Q Consensus       507 ~~~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~------  579 (689)
                      ..++|++.+.||+|+||.||+|.. .+++.||||++............+.+|+.+++.++||||+++++++...      
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~   94 (355)
T cd07874          15 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEEF   94 (355)
T ss_pred             hhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeecccccccc
Confidence            456899999999999999999965 4689999999976544445566788999999999999999999988653      


Q ss_pred             CeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeec
Q 005587          580 GQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCG  659 (689)
Q Consensus       580 ~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG  659 (689)
                      ...|+||||+++ +|.+.+..      .+++..+..++.|+++||.|||+.   +|+||||||+|||++.++.+||+|||
T Consensus        95 ~~~~lv~e~~~~-~l~~~~~~------~l~~~~~~~~~~qi~~aL~~LH~~---givHrDikp~Nill~~~~~~kl~Dfg  164 (355)
T cd07874          95 QDVYLVMELMDA-NLCQVIQM------ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFG  164 (355)
T ss_pred             ceeEEEhhhhcc-cHHHHHhh------cCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChHHEEECCCCCEEEeeCc
Confidence            357999999965 67766642      478889999999999999999987   89999999999999999999999999


Q ss_pred             CCccccCCCcceeecccceEEeccccc
Q 005587          660 LAPLISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       660 la~~~~~~~~~~~~~~~~~~~apE~~~  686 (689)
                      +++............++..|+|||++.
T Consensus       165 ~~~~~~~~~~~~~~~~t~~y~aPE~~~  191 (355)
T cd07874         165 LARTAGTSFMMTPYVVTRYYRAPEVIL  191 (355)
T ss_pred             ccccCCCccccCCccccCCccCHHHHc
Confidence            999876554444456788999999874

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.92  E-value=1.8e-24  Score=223.12  Aligned_cols=175  Identities=22%  Similarity=0.323  Sum_probs=147.8

Q ss_pred             cCCCccceEeecCCeEEEEEEe-CCCcEEEEEEecccc-CChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRA-SSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      ++|++.+.||+|+||.||+|+. .+++.||||.+.... ........+.+|+++++.++||||+++++++...+..++||
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVL   81 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEE
Confidence            4788899999999999999975 478999999876432 23344567889999999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      ||+++|+|.+++.........+++..+..++.|+++||.|||+.   +|+|+||||+||+++.++.++|+|||++..+..
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~~  158 (267)
T cd08228          82 ELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGRFFSS  158 (267)
T ss_pred             EecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCCHHHEEEcCCCCEEECccccceeccc
Confidence            99999999998865333345688899999999999999999987   899999999999999999999999999998765


Q ss_pred             CCcc-eeecccceEEeccccc
Q 005587          667 GSVS-QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 ~~~~-~~~~~~~~~~apE~~~  686 (689)
                      .... ....+...|+|||.+.
T Consensus       159 ~~~~~~~~~~~~~~~aPE~~~  179 (267)
T cd08228         159 KTTAAHSLVGTPYYMSPERIH  179 (267)
T ss_pred             hhHHHhcCCCCccccChhhhc
Confidence            4322 2235667899999873

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.92  E-value=4.3e-25  Score=240.09  Aligned_cols=169  Identities=26%  Similarity=0.438  Sum_probs=145.7

Q ss_pred             CCccceEeecCCeEEEEEEeCC----CcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          511 FSQENLIGAGMLGSVYRAQLPD----GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       511 f~~~~~iG~G~~G~Vy~~~~~~----g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      ..++++||.|.||.||+|+++-    ...||||.++.... ....++|+.|..+|++..||||++|.|+.......+||.
T Consensus       631 i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~Gyt-ekqrrdFL~EAsIMGQFdHPNIIrLEGVVTks~PvMIiT  709 (996)
T KOG0196|consen  631 VKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYT-EKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSKPVMIIT  709 (996)
T ss_pred             eEEEEEEecccccceecccccCCCCcceeEEEeeeccCcc-HHHHhhhhhhhhhcccCCCCcEEEEEEEEecCceeEEEh
Confidence            4678899999999999998753    35799999976543 456789999999999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      |||++|+|..+|+..+   ..+.+.+...|.++||.||.||-+.   ++|||||-..|||++.+..+|++||||+|.+.+
T Consensus       710 EyMENGsLDsFLR~~D---GqftviQLVgMLrGIAsGMkYLsdm---~YVHRDLAARNILVNsnLvCKVsDFGLSRvled  783 (996)
T KOG0196|consen  710 EYMENGSLDSFLRQND---GQFTVIQLVGMLRGIASGMKYLSDM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVLED  783 (996)
T ss_pred             hhhhCCcHHHHHhhcC---CceEeehHHHHHHHHHHHhHHHhhc---CchhhhhhhhheeeccceEEEeccccceeeccc
Confidence            9999999999999865   3488899999999999999999987   899999999999999999999999999999877


Q ss_pred             CCcce-eeccc-c--eEEeccccc
Q 005587          667 GSVSQ-VSHNL-T--IMRAGGVTH  686 (689)
Q Consensus       667 ~~~~~-~~~~~-~--~~~apE~~~  686 (689)
                      ++... .+.++ .  -|.|||.|-
T Consensus       784 d~~~~ytt~GGKIPiRWTAPEAIa  807 (996)
T KOG0196|consen  784 DPEAAYTTLGGKIPIRWTAPEAIA  807 (996)
T ss_pred             CCCccccccCCccceeecChhHhh
Confidence            66222 22222 2  277999983

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.92  E-value=1.9e-24  Score=222.42  Aligned_cols=171  Identities=22%  Similarity=0.339  Sum_probs=145.5

Q ss_pred             ccCCCccceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      .++|++.+.||+|+||.||+|...+++.||+|.+.....   ...++.+|++++++++||||+++++++...+..++|||
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   81 (261)
T cd05068           5 RTSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTM---DPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTE   81 (261)
T ss_pred             hhheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCcc---cHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeeee
Confidence            356888899999999999999887788999999865432   34678899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+++++|.+++....  ...+++..+..++.|++.||.|||+.   +|+||||||+||++++++.+||+|||+++.+...
T Consensus        82 ~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~  156 (261)
T cd05068          82 LMKYGSLLEYLQGGA--GRALKLPQLIDMAAQVASGMAYLEAQ---NYIHRDLAARNVLVGENNICKVADFGLARVIKED  156 (261)
T ss_pred             cccCCcHHHHHhccC--CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCcceEEEcCCCCEEECCcceEEEccCC
Confidence            999999999997633  34689999999999999999999987   8999999999999999999999999999987644


Q ss_pred             Ccceeec--ccceEEeccccc
Q 005587          668 SVSQVSH--NLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~~~~~~--~~~~~~apE~~~  686 (689)
                      .......  ....|+|||++.
T Consensus       157 ~~~~~~~~~~~~~y~aPE~~~  177 (261)
T cd05068         157 IYEAREGAKFPIKWTAPEAAL  177 (261)
T ss_pred             cccccCCCcCceeccCccccc
Confidence            3222111  123699999874

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.92  E-value=1.7e-24  Score=226.04  Aligned_cols=171  Identities=27%  Similarity=0.363  Sum_probs=137.6

Q ss_pred             CCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhc---CCCCCcceecEEEEe-----CC
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDR---IRHANIVELKGYCAE-----HG  580 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~---l~HpnIv~l~~~~~~-----~~  580 (689)
                      +|++.+.||+|+||.||+|+.. +|+.||+|.+............+.+|+++++.   ++||||+++++++..     ..
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~   80 (288)
T cd07863           1 QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRET   80 (288)
T ss_pred             CceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCc
Confidence            4778899999999999999654 68999999987543322223345566666554   479999999998864     34


Q ss_pred             eEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecC
Q 005587          581 QRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGL  660 (689)
Q Consensus       581 ~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGl  660 (689)
                      ..++||||+.+ +|.+++....  ...+++..+..++.|++.||.|||+.   +|+||||||+|||+++++.+||+|||+
T Consensus        81 ~~~lv~e~~~~-~l~~~~~~~~--~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dikp~Nili~~~~~~kl~dfg~  154 (288)
T cd07863          81 KVTLVFEHVDQ-DLRTYLDKVP--PPGLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGGQVKLADFGL  154 (288)
T ss_pred             eEEEEEccccc-CHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEECccCc
Confidence            57999999974 8988887532  24589999999999999999999997   899999999999999999999999999


Q ss_pred             CccccCCCcceeecccceEEeccccc
Q 005587          661 APLISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       661 a~~~~~~~~~~~~~~~~~~~apE~~~  686 (689)
                      ++.+..........++..|+|||++.
T Consensus       155 ~~~~~~~~~~~~~~~~~~y~aPE~~~  180 (288)
T cd07863         155 ARIYSCQMALTPVVVTLWYRAPEVLL  180 (288)
T ss_pred             cccccCcccCCCccccccccCchHhh
Confidence            99876544433445678899999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.92  E-value=6.2e-25  Score=225.25  Aligned_cols=169  Identities=30%  Similarity=0.464  Sum_probs=144.3

Q ss_pred             CCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEecc
Q 005587          511 FSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYC  589 (689)
Q Consensus       511 f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~  589 (689)
                      |++.+.||+|+||.||+++.. +++.||+|++..............+|+.++++++||||+++++++...+..++||||+
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~   80 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEYC   80 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEEE
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhcccccccccccccccccccccccccccccc
Confidence            567889999999999999765 5678999999876543333344566999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccc-cCCC
Q 005587          590 SNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI-SSGS  668 (689)
Q Consensus       590 ~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~-~~~~  668 (689)
                      .+++|.+++..    ...+++..+..++.|+++||.|||+.   +|+|+||||+||++++++.++|+|||.+..+ ....
T Consensus        81 ~~~~L~~~l~~----~~~~~~~~~~~~~~qi~~~L~~Lh~~---~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~~~  153 (260)
T PF00069_consen   81 PGGSLQDYLQK----NKPLSEEEILKIAYQILEALAYLHSK---GIVHRDIKPENILLDENGEVKLIDFGSSVKLSENNE  153 (260)
T ss_dssp             TTEBHHHHHHH----HSSBBHHHHHHHHHHHHHHHHHHHHT---TEEESSBSGGGEEESTTSEEEESSGTTTEESTSTTS
T ss_pred             ccccccccccc----cccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccc
Confidence            99999999983    35689999999999999999999997   8999999999999999999999999999864 2233


Q ss_pred             cceeecccceEEeccccc
Q 005587          669 VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       669 ~~~~~~~~~~~~apE~~~  686 (689)
                      ......++..|+|||+..
T Consensus       154 ~~~~~~~~~~y~aPE~~~  171 (260)
T PF00069_consen  154 NFNPFVGTPEYMAPEVLQ  171 (260)
T ss_dssp             EBSSSSSSGGGSCHHHHT
T ss_pred             cccccccccccccccccc
Confidence            334456677899999964

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.92  E-value=1.7e-24  Score=234.32  Aligned_cols=169  Identities=20%  Similarity=0.247  Sum_probs=142.7

Q ss_pred             ccCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeC------C
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEH------G  580 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~------~  580 (689)
                      .++|++.+.||+|+||.||+|.. .+++.||||++............+.+|+.+++.++||||+++++++...      .
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~~  102 (364)
T cd07875          23 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ  102 (364)
T ss_pred             hcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeecccccccccC
Confidence            46799999999999999999965 4688999999976544444556788999999999999999999987643      3


Q ss_pred             eEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecC
Q 005587          581 QRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGL  660 (689)
Q Consensus       581 ~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGl  660 (689)
                      ..|+||||+.+ +|.+.+..      .+++..+..++.|+++||.|||+.   +|+||||||+|||++.++.+||+|||+
T Consensus       103 ~~~lv~e~~~~-~l~~~~~~------~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~  172 (364)
T cd07875         103 DVYIVMELMDA-NLCQVIQM------ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGL  172 (364)
T ss_pred             eEEEEEeCCCC-CHHHHHHh------cCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEEECCCCcEEEEeCCC
Confidence            57999999965 77777642      478889999999999999999987   899999999999999999999999999


Q ss_pred             CccccCCCcceeecccceEEeccccc
Q 005587          661 APLISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       661 a~~~~~~~~~~~~~~~~~~~apE~~~  686 (689)
                      ++............++..|+|||++.
T Consensus       173 a~~~~~~~~~~~~~~t~~y~aPE~~~  198 (364)
T cd07875         173 ARTAGTSFMMTPYVVTRYYRAPEVIL  198 (364)
T ss_pred             ccccCCCCcccCCcccCCcCCHHHHh
Confidence            99876554444456788899999874

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.92  E-value=1.3e-24  Score=233.17  Aligned_cols=170  Identities=21%  Similarity=0.295  Sum_probs=143.2

Q ss_pred             hhccCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeC-----
Q 005587          506 QYTNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEH-----  579 (689)
Q Consensus       506 ~~~~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~-----  579 (689)
                      ...++|.+.+.||+|+||.||+|.. .+++.||||++............+.+|++++++++||||+++++++...     
T Consensus        12 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   91 (343)
T cd07878          12 EVPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIEN   91 (343)
T ss_pred             hhhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccccccc
Confidence            3457899999999999999999965 5688999999876543334456678999999999999999999987543     


Q ss_pred             -CeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEee
Q 005587          580 -GQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDC  658 (689)
Q Consensus       580 -~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DF  658 (689)
                       ...|++||++ +++|.+++..     ..+++..+..++.|+++||.|||+.   +|+||||||+|||+++++.+||+||
T Consensus        92 ~~~~~~~~~~~-~~~l~~~~~~-----~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrdikp~Nil~~~~~~~kl~Df  162 (343)
T cd07878          92 FNEVYLVTNLM-GADLNNIVKC-----QKLSDEHVQFLIYQLLRGLKYIHSA---GIIHRDLKPSNVAVNEDCELRILDF  162 (343)
T ss_pred             cCcEEEEeecC-CCCHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHHC---CeecccCChhhEEECCCCCEEEcCC
Confidence             4578999998 7899988763     3589999999999999999999997   8999999999999999999999999


Q ss_pred             cCCccccCCCcceeecccceEEeccccc
Q 005587          659 GLAPLISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       659 Gla~~~~~~~~~~~~~~~~~~~apE~~~  686 (689)
                      |+++........  ..++..|+|||++.
T Consensus       163 g~~~~~~~~~~~--~~~t~~y~aPE~~~  188 (343)
T cd07878         163 GLARQADDEMTG--YVATRWYRAPEIML  188 (343)
T ss_pred             ccceecCCCcCC--ccccccccCchHhc
Confidence            999987554322  35678899999874

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=2.4e-25  Score=246.90  Aligned_cols=172  Identities=28%  Similarity=0.426  Sum_probs=145.2

Q ss_pred             CccceEeecCCeEEEEEEeC------CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEE
Q 005587          512 SQENLIGAGMLGSVYRAQLP------DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLI  585 (689)
Q Consensus       512 ~~~~~iG~G~~G~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV  585 (689)
                      +..+.||+|+||+||+|+..      +...||||.+++... .+...+|++|+++++.++|||||+++|.|...+.++||
T Consensus       489 ~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~-~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~P~~Mv  567 (774)
T KOG1026|consen  489 VFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAE-NQARQDFRREAELLAELQHPNIVRLLGVCREGDPLCMV  567 (774)
T ss_pred             eehhhhcCchhhhhhhhhccCCCCCccceehhHhhhccccc-HHHHHHHHHHHHHHHhccCCCeEEEEEEEccCCeeEEE
Confidence            34578999999999999643      346899999976543 45678999999999999999999999999999999999


Q ss_pred             EeccCCCCHHHHHhcCccc----------CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEE
Q 005587          586 YEYCSNGTLQDMLHSDDEL----------KNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSV  655 (689)
Q Consensus       586 ~Ey~~ggsL~~~l~~~~~~----------~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl  655 (689)
                      +|||..|||.++|......          +.+++..+.+.||.|||.||+||-+.   .+|||||-..|+|+.++..+||
T Consensus       568 FEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~---~FVHRDLATRNCLVge~l~VKI  644 (774)
T KOG1026|consen  568 FEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSH---HFVHRDLATRNCLVGENLVVKI  644 (774)
T ss_pred             EEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhC---cccccchhhhhceeccceEEEe
Confidence            9999999999999864321          23388899999999999999999987   7999999999999999999999


Q ss_pred             EeecCCccccCCCcceeeccc---ceEEecccccc
Q 005587          656 SDCGLAPLISSGSVSQVSHNL---TIMRAGGVTHR  687 (689)
Q Consensus       656 ~DFGla~~~~~~~~~~~~~~~---~~~~apE~~~~  687 (689)
                      +||||+|.+-..+......++   .-||+||.|.+
T Consensus       645 sDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly  679 (774)
T KOG1026|consen  645 SDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILY  679 (774)
T ss_pred             cccccchhhhhhhhhcccCCceeeeecCCHHHhhc
Confidence            999999987665544433333   22999999853

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.92  E-value=3.6e-24  Score=226.22  Aligned_cols=170  Identities=19%  Similarity=0.275  Sum_probs=145.2

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      ++|++.+.||+|+||.||++... ++..+|+|.+.... ......++.+|++++.+++||||+++++++...+..++|||
T Consensus         1 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   79 (308)
T cd06615           1 DDFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEI-KPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICME   79 (308)
T ss_pred             CCceEEeeccCCCCeEEEEEEEcCCCeEEEEEEecccc-CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEee
Confidence            36888999999999999999654 68889999886542 23345678899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+++++|.++++..    ..+++..+..++.|+++||.|||+.+  +++||||||+|||+++++.+||+|||++..+...
T Consensus        80 y~~~~~L~~~l~~~----~~~~~~~~~~~~~~i~~~l~~lH~~~--~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~  153 (308)
T cd06615          80 HMDGGSLDQVLKKA----GRIPENILGKISIAVLRGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS  153 (308)
T ss_pred             ccCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHhhC--CEEECCCChHHEEEecCCcEEEccCCCccccccc
Confidence            99999999999753    45889999999999999999999742  7999999999999999999999999999876543


Q ss_pred             CcceeecccceEEeccccc
Q 005587          668 SVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~~~~~~~~~~~~apE~~~  686 (689)
                      ... ...++..|+|||++.
T Consensus       154 ~~~-~~~~~~~~~aPE~~~  171 (308)
T cd06615         154 MAN-SFVGTRSYMSPERLQ  171 (308)
T ss_pred             ccc-cCCCCcCccChhHhc
Confidence            322 235667899999874

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.92  E-value=3.9e-24  Score=220.38  Aligned_cols=175  Identities=23%  Similarity=0.348  Sum_probs=148.9

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEecccc-CChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRA-SSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      ++|++.+.||+|+||.||+|... +|+.||+|.+.... ........+.+|++++++++|+||+++++++...+..++||
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~   81 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVL   81 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEE
Confidence            57888999999999999999765 79999999886432 22334667889999999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      ||+++|+|.+++.........+++..++.++.|+++||.|||+.   +|+||||||+||+++.++.++|+|||+++.+..
T Consensus        82 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~~  158 (267)
T cd08224          82 ELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSK---RIMHRDIKPANVFITATGVVKLGDLGLGRFFSS  158 (267)
T ss_pred             ecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhC---CEecCCcChhhEEECCCCcEEEeccceeeeccC
Confidence            99999999999875433345689999999999999999999987   899999999999999999999999999987654


Q ss_pred             CCc-ceeecccceEEeccccc
Q 005587          667 GSV-SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 ~~~-~~~~~~~~~~~apE~~~  686 (689)
                      ... .....++..|+|||++.
T Consensus       159 ~~~~~~~~~~~~~y~apE~~~  179 (267)
T cd08224         159 KTTAAHSLVGTPYYMSPERIH  179 (267)
T ss_pred             CCcccceecCCccccCHHHhc
Confidence            332 22235667899999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.92  E-value=3.2e-24  Score=219.53  Aligned_cols=172  Identities=23%  Similarity=0.353  Sum_probs=148.6

Q ss_pred             CCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      +|...+.||+|+||.||+|... +++.|++|.+............+.+|++++++++||||+++++++...+..++||||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEY   80 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEe
Confidence            4677889999999999999764 689999999876554455677899999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      +++++|.++++...  ...+++..+..++.|++.||.|||+.   +|+|+||||+||++++++.+||+|||+++.+....
T Consensus        81 ~~~~~L~~~l~~~~--~~~~~~~~~~~i~~~l~~al~~lH~~---~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~~  155 (256)
T cd08529          81 AENGDLHKLLKMQR--GRPLPEDQVWRFFIQILLGLAHLHSK---KILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNT  155 (256)
T ss_pred             CCCCcHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEEeCCCCEEEcccccceeccCcc
Confidence            99999999998642  34688999999999999999999987   89999999999999999999999999999876543


Q ss_pred             cc-eeecccceEEeccccc
Q 005587          669 VS-QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       669 ~~-~~~~~~~~~~apE~~~  686 (689)
                      .. ....++..|+|||+..
T Consensus       156 ~~~~~~~~~~~y~aPE~~~  174 (256)
T cd08529         156 NFANTIVGTPYYLSPELCE  174 (256)
T ss_pred             chhhccccCccccCHHHhc
Confidence            22 2234567799999874

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.92  E-value=2e-24  Score=224.28  Aligned_cols=176  Identities=22%  Similarity=0.291  Sum_probs=144.1

Q ss_pred             hccCCCccceEeecCCeEEEEEEeC------CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCC
Q 005587          507 YTNSFSQENLIGAGMLGSVYRAQLP------DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHG  580 (689)
Q Consensus       507 ~~~~f~~~~~iG~G~~G~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~  580 (689)
                      ..++|++.+.||+|+||.||+|...      ++..||||.+.... ......++.+|+.+++.++||||+++++++...+
T Consensus         4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~-~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~   82 (277)
T cd05062           4 AREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAA-SMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQ   82 (277)
T ss_pred             cHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccC-CHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCC
Confidence            3467889999999999999998642      35679999986432 2334567889999999999999999999999999


Q ss_pred             eEEEEEeccCCCCHHHHHhcCccc------CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEE
Q 005587          581 QRLLIYEYCSNGTLQDMLHSDDEL------KNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVS  654 (689)
Q Consensus       581 ~~~lV~Ey~~ggsL~~~l~~~~~~------~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~k  654 (689)
                      ..++||||+++|+|.+++......      ...+++..++.++.|+++||.|||+.   +++||||||+||++++++.+|
T Consensus        83 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~~vH~dlkp~Nil~~~~~~~~  159 (277)
T cd05062          83 PTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVK  159 (277)
T ss_pred             CeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCcchheEEEcCCCCEE
Confidence            999999999999999998753211      23467889999999999999999987   899999999999999999999


Q ss_pred             EEeecCCccccCCCccee---ecccceEEeccccc
Q 005587          655 VSDCGLAPLISSGSVSQV---SHNLTIMRAGGVTH  686 (689)
Q Consensus       655 l~DFGla~~~~~~~~~~~---~~~~~~~~apE~~~  686 (689)
                      |+|||+++.+........   ..++..|+|||++.
T Consensus       160 l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  194 (277)
T cd05062         160 IGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLK  194 (277)
T ss_pred             ECCCCCccccCCcceeecCCCCccCHhhcChhHhh
Confidence            999999987654432221   12345699999874

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.91  E-value=2.6e-24  Score=227.43  Aligned_cols=170  Identities=21%  Similarity=0.313  Sum_probs=142.2

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      +.|.+.+.||+|+||.||+|+.. +++.||+|.+..... ......+.+|++++++++||||+++++++...+..++|||
T Consensus         6 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   84 (309)
T cd07872           6 ETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHE-EGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFE   84 (309)
T ss_pred             CceEEEEEecccCCEEEEEEEecCCCCeEEEEEeecccc-CCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEe
Confidence            46888899999999999999764 688999999875432 2234467789999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+++ +|.+++...   ...+++..+..++.|+++||+|||+.   +|+||||||+|||++.++.+||+|||+++.....
T Consensus        85 ~~~~-~l~~~~~~~---~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~  157 (309)
T cd07872          85 YLDK-DLKQYMDDC---GNIMSMHNVKIFLYQILRGLAYCHRR---KVLHRDLKPQNLLINERGELKLADFGLARAKSVP  157 (309)
T ss_pred             CCCC-CHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEECccccceecCCC
Confidence            9975 888887653   23578899999999999999999987   8999999999999999999999999999865433


Q ss_pred             Cc-ceeecccceEEeccccc
Q 005587          668 SV-SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~-~~~~~~~~~~~apE~~~  686 (689)
                      .. .....++..|+|||++.
T Consensus       158 ~~~~~~~~~~~~y~aPE~~~  177 (309)
T cd07872         158 TKTYSNEVVTLWYRPPDVLL  177 (309)
T ss_pred             ccccccccccccccCCHHHh
Confidence            22 22334577899999874

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.91  E-value=1.3e-24  Score=222.29  Aligned_cols=150  Identities=27%  Similarity=0.364  Sum_probs=134.1

Q ss_pred             cCCCccceEeecCCeEEEEEEeCC-CcEEEEEEeccccCC-hhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASS-QQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~~-g~~vAvK~l~~~~~~-~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      +.|++.+.||+|.-|+||++++++ +..+|+|++.+.... .....+...|.++|+.++||.+++||+.++.+.+.++||
T Consensus        77 ~~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~m  156 (459)
T KOG0610|consen   77 RHFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCLVM  156 (459)
T ss_pred             HHHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEEEE
Confidence            456778899999999999998764 689999999876543 344566778889999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcc
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPL  663 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~  663 (689)
                      |||+||+|+.+.+.+.  .+.+++..++-|+.+|+-||+|||..   |||+|||||+||||-++|++-|+||-|+..
T Consensus       157 eyCpGGdL~~LrqkQp--~~~fse~~aRFYaAEvl~ALEYLHml---GivYRDLKPENILvredGHIMLsDFDLS~~  228 (459)
T KOG0610|consen  157 EYCPGGDLHSLRQKQP--GKRFSESAARFYAAEVLLALEYLHML---GIVYRDLKPENILVREDGHIMLSDFDLSLR  228 (459)
T ss_pred             ecCCCccHHHHHhhCC--CCccchhhHHHHHHHHHHHHHHHHhh---ceeeccCCcceeEEecCCcEEeeecccccc
Confidence            9999999999988754  56799999999999999999999998   999999999999999999999999998753

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.91  E-value=4.6e-24  Score=220.18  Aligned_cols=171  Identities=27%  Similarity=0.436  Sum_probs=143.4

Q ss_pred             cCCCccceEeecCCeEEEEEEeCC----CcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPD----GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLL  584 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~~----g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~l  584 (689)
                      ++|++.+.||+|+||.||+|.+..    ...||||.+..... ......|.+|+.++++++||||+++++++...+..++
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~i   82 (266)
T cd05033           4 SYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSS-DKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMI   82 (266)
T ss_pred             HHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCC-hHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCceEE
Confidence            468889999999999999997642    45799998865432 3445678899999999999999999999999999999


Q ss_pred             EEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccc
Q 005587          585 IYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI  664 (689)
Q Consensus       585 V~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~  664 (689)
                      ||||+++|+|.+++....   ..+++..+++++.|++.||+|||+.   +|+|+||||+|||+++++.+||+|||+++.+
T Consensus        83 v~e~~~~~~L~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~Lh~~---~i~H~di~p~nili~~~~~~~l~dfg~~~~~  156 (266)
T cd05033          83 ITEYMENGSLDKFLREND---GKFTVGQLVGMLRGIASGMKYLSEM---NYVHRDLAARNILVNSNLVCKVSDFGLSRRL  156 (266)
T ss_pred             EEEcCCCCCHHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCCEEECccchhhcc
Confidence            999999999999997532   3689999999999999999999987   8999999999999999999999999999988


Q ss_pred             cCCCccee---ecccceEEeccccc
Q 005587          665 SSGSVSQV---SHNLTIMRAGGVTH  686 (689)
Q Consensus       665 ~~~~~~~~---~~~~~~~~apE~~~  686 (689)
                      ........   ...+..|+|||.+.
T Consensus       157 ~~~~~~~~~~~~~~~~~y~~Pe~~~  181 (266)
T cd05033         157 EDSEATYTTKGGKIPIRWTAPEAIA  181 (266)
T ss_pred             cccccceeccCCCCCccccChhhhc
Confidence            52221111   12234699999874

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.91  E-value=5.1e-24  Score=219.11  Aligned_cols=171  Identities=24%  Similarity=0.345  Sum_probs=144.6

Q ss_pred             cCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCC---hhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASS---QQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLL  584 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~---~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~l  584 (689)
                      ++|++.+.||+|++|.||+|.. .+++.||+|.+......   ......+.+|++++++++||||+++++++...+..++
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   81 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSI   81 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEE
Confidence            4688899999999999999965 46899999998654322   1234568889999999999999999999999999999


Q ss_pred             EEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccc
Q 005587          585 IYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI  664 (689)
Q Consensus       585 V~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~  664 (689)
                      ||||+++++|.+++...    ..+++..+..++.|++.||.|||+.   +|+||||||+||++++++.++|+|||+++.+
T Consensus        82 v~e~~~~~~l~~~~~~~----~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dl~p~nilv~~~~~~~l~dfg~~~~~  154 (263)
T cd06625          82 FMEYMPGGSVKDQLKAY----GALTETVTRKYTRQILEGVEYLHSN---MIVHRDIKGANILRDSAGNVKLGDFGASKRL  154 (263)
T ss_pred             EEEECCCCcHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeecccceec
Confidence            99999999999998753    3578899999999999999999987   8999999999999999999999999999876


Q ss_pred             cCCCcc----eeecccceEEeccccc
Q 005587          665 SSGSVS----QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       665 ~~~~~~----~~~~~~~~~~apE~~~  686 (689)
                      ......    ....+...|+|||++.
T Consensus       155 ~~~~~~~~~~~~~~~~~~y~aPE~~~  180 (263)
T cd06625         155 QTICSSGTGMKSVTGTPYWMSPEVIS  180 (263)
T ss_pred             cccccccccccCCCcCccccCcceec
Confidence            443211    1234567899999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.91  E-value=3.7e-24  Score=222.77  Aligned_cols=174  Identities=18%  Similarity=0.295  Sum_probs=142.0

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHH-HhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNN-IDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~-l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      ++|++.+.||+|+||.||+|+.. +|+.||+|++....... ....+..|+.. ++.++||||+++++++...+..|+||
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~   79 (283)
T cd06617           1 DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQ-EQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICM   79 (283)
T ss_pred             CCceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcH-HHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEh
Confidence            36888899999999999999764 69999999987654322 23445555554 66779999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      ||++ |+|.+++.........+++..+..++.|++.||+|||+.+  +++||||||+||+++.++.+||+|||+++.+..
T Consensus        80 e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~--~i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~~  156 (283)
T cd06617          80 EVMD-TSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKL--SVIHRDVKPSNVLINRNGQVKLCDFGISGYLVD  156 (283)
T ss_pred             hhhc-ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeeccccccccc
Confidence            9996 6898888654333457899999999999999999999752  799999999999999999999999999998754


Q ss_pred             CCcceeecccceEEeccccc
Q 005587          667 GSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 ~~~~~~~~~~~~~~apE~~~  686 (689)
                      ........++..|+|||++.
T Consensus       157 ~~~~~~~~~~~~y~aPE~~~  176 (283)
T cd06617         157 SVAKTIDAGCKPYMAPERIN  176 (283)
T ss_pred             ccccccccCCccccChhhcC
Confidence            43333345677899999863

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.91  E-value=2.1e-24  Score=221.83  Aligned_cols=172  Identities=27%  Similarity=0.406  Sum_probs=147.3

Q ss_pred             ccCCCccceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      ..+|++.+.||+|+||.||+|...+++.+|+|.+....  ......+..|+.+++.++|+||+++++++...+..++|||
T Consensus         5 ~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   82 (261)
T cd05148           5 REEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDD--LLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITE   82 (261)
T ss_pred             HHHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccc--hhhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEEEe
Confidence            45688889999999999999988889999999986543  2345678899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+++|+|.+++....  ...+++..+..++.|++.||.|||+.   +|+|+||||+||++++++.+||+|||++..+...
T Consensus        83 ~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~~i~~al~~lH~~---~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~  157 (261)
T cd05148          83 LMEKGSLLAFLRSPE--GQVLPVASLIDMACQVAEGMAYLEEQ---NSIHRDLAARNILVGEDLVCKVADFGLARLIKED  157 (261)
T ss_pred             ecccCCHHHHHhcCC--CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccCcceEEEcCCceEEEccccchhhcCCc
Confidence            999999999997643  34689999999999999999999987   8999999999999999999999999999887654


Q ss_pred             Ccceee-cccceEEeccccc
Q 005587          668 SVSQVS-HNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~~~~~-~~~~~~~apE~~~  686 (689)
                      ...... ..+..|++||+..
T Consensus       158 ~~~~~~~~~~~~~~~PE~~~  177 (261)
T cd05148         158 VYLSSDKKIPYKWTAPEAAS  177 (261)
T ss_pred             cccccCCCCceEecCHHHHc
Confidence            332222 2234699999874

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.91  E-value=5.5e-24  Score=221.80  Aligned_cols=170  Identities=25%  Similarity=0.398  Sum_probs=141.3

Q ss_pred             cCCCccceEeecCCeEEEEEEe-----CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEe--CCe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-----PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAE--HGQ  581 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~-----~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~--~~~  581 (689)
                      ++|++.+.||+|+||.||+|..     .+++.||+|.+....  ....+.+.+|++++++++||||+++++++..  ...
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~   81 (284)
T cd05081           4 RHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHST--AEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRN   81 (284)
T ss_pred             ccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCC--HHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCc
Confidence            4678889999999999999964     257899999986532  3445678999999999999999999998754  346


Q ss_pred             EEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCC
Q 005587          582 RLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA  661 (689)
Q Consensus       582 ~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla  661 (689)
                      .++||||+++|+|.+++...   ...+++..++.++.|++.||+|||+.   +|+||||||+||++++++.+||+|||++
T Consensus        82 ~~lv~e~~~~~~L~~~l~~~---~~~l~~~~~~~~~~~l~~aL~~LH~~---~i~H~dlkp~nili~~~~~~~l~dfg~~  155 (284)
T cd05081          82 LRLVMEYLPYGSLRDYLQKH---RERLDHRKLLLYASQICKGMEYLGSK---RYVHRDLATRNILVESENRVKIGDFGLT  155 (284)
T ss_pred             eEEEEEecCCCCHHHHHHhc---CcCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHhhEEECCCCeEEECCCccc
Confidence            89999999999999999753   23589999999999999999999987   8999999999999999999999999999


Q ss_pred             ccccCCCcce----eecccceEEeccccc
Q 005587          662 PLISSGSVSQ----VSHNLTIMRAGGVTH  686 (689)
Q Consensus       662 ~~~~~~~~~~----~~~~~~~~~apE~~~  686 (689)
                      +.+.......    ......+|+|||++.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  184 (284)
T cd05081         156 KVLPQDKEYYKVREPGESPIFWYAPESLT  184 (284)
T ss_pred             ccccCCCcceeecCCCCCceEeeCHHHhc
Confidence            9875443211    112335699999874

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.91  E-value=4.2e-24  Score=222.66  Aligned_cols=174  Identities=25%  Similarity=0.375  Sum_probs=143.0

Q ss_pred             cCCCccceEeecCCeEEEEEEe-----CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-----PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRL  583 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~-----~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~  583 (689)
                      ++|++.+.||+|+||.||+|..     .++..||+|.+..... ......+.+|++++++++||||+++++++...+..|
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~   83 (283)
T cd05090           5 SAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINN-PQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPVC   83 (283)
T ss_pred             hhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCC-HHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCceE
Confidence            4577789999999999999964     2467899999875432 344567889999999999999999999999999999


Q ss_pred             EEEeccCCCCHHHHHhcCcc-------------cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCC
Q 005587          584 LIYEYCSNGTLQDMLHSDDE-------------LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDD  650 (689)
Q Consensus       584 lV~Ey~~ggsL~~~l~~~~~-------------~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~  650 (689)
                      +||||+.+|+|.+++.....             ....+++...+.++.|++.||.|||+.   +|+||||||+|||++++
T Consensus        84 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~i~H~dlkp~nili~~~  160 (283)
T cd05090          84 MLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSH---FFVHKDLAARNILIGEQ  160 (283)
T ss_pred             EEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhc---CeehhccccceEEEcCC
Confidence            99999999999999863211             123578999999999999999999987   89999999999999999


Q ss_pred             CcEEEEeecCCccccCCCcc---eeecccceEEeccccc
Q 005587          651 LAVSVSDCGLAPLISSGSVS---QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       651 ~~~kl~DFGla~~~~~~~~~---~~~~~~~~~~apE~~~  686 (689)
                      +.+||+|||+++.+......   .....+..|+|||.+.
T Consensus       161 ~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  199 (283)
T cd05090         161 LHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIM  199 (283)
T ss_pred             CcEEeccccccccccCCcceecccCCCccceecChHHhc
Confidence            99999999999876543321   1122345699999873

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.91  E-value=2.7e-24  Score=221.19  Aligned_cols=170  Identities=24%  Similarity=0.388  Sum_probs=145.2

Q ss_pred             cCCCccceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      ++|++.++||+|+||.||+|...++..||+|.+....   ...+.+.+|+.++++++|+||+++++++...+..++||||
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   82 (261)
T cd05072           6 ESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGT---MSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEY   82 (261)
T ss_pred             HHeEEeeecCCcCCceEEEEEecCCceEEEEEccCCc---hhHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEec
Confidence            5688899999999999999988888899999876432   2356788999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      +++|+|.++++...  ...+++..++.++.|+++||+|||+.   +++||||||+||++++++.+||+|||+++......
T Consensus        83 ~~~~~L~~~l~~~~--~~~~~~~~~~~~~~~l~~~l~~LH~~---~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~  157 (261)
T cd05072          83 MAKGSLLDFLKSDE--GGKVLLPKLIDFSAQIAEGMAYIERK---NYIHRDLRAANVLVSESLMCKIADFGLARVIEDNE  157 (261)
T ss_pred             CCCCcHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccchhhEEecCCCcEEECCCccceecCCCc
Confidence            99999999997532  34678899999999999999999987   89999999999999999999999999999876543


Q ss_pred             cce--eecccceEEeccccc
Q 005587          669 VSQ--VSHNLTIMRAGGVTH  686 (689)
Q Consensus       669 ~~~--~~~~~~~~~apE~~~  686 (689)
                      ...  ...++..|+|||.+.
T Consensus       158 ~~~~~~~~~~~~y~aPE~~~  177 (261)
T cd05072         158 YTAREGAKFPIKWTAPEAIN  177 (261)
T ss_pred             eeccCCCccceecCCHHHhc
Confidence            221  122345699999873

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.91  E-value=4.7e-24  Score=220.09  Aligned_cols=168  Identities=27%  Similarity=0.380  Sum_probs=144.0

Q ss_pred             cCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      ++|++.+.||+|+||.||+|.. .+++.||+|++.....  .....+.+|+.++++++||||+++++++...+..++|||
T Consensus         9 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~--~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv~e   86 (267)
T cd06646           9 HDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPG--DDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWICME   86 (267)
T ss_pred             hhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCcc--chHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEEEe
Confidence            4688899999999999999975 5688999999864422  234567889999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+++++|.++++.    ...+++..+..++.|+++||.|||+.   +|+||||||+||++++++.+||+|||+++.+...
T Consensus        87 ~~~~~~L~~~~~~----~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~  159 (267)
T cd06646          87 YCGGGSLQDIYHV----TGPLSELQIAYVCRETLQGLAYLHSK---GKMHRDIKGANILLTDNGDVKLADFGVAAKITAT  159 (267)
T ss_pred             CCCCCcHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEECCCCCEEECcCccceeeccc
Confidence            9999999999875    24578999999999999999999987   8999999999999999999999999999877543


Q ss_pred             Cc-ceeecccceEEecccc
Q 005587          668 SV-SQVSHNLTIMRAGGVT  685 (689)
Q Consensus       668 ~~-~~~~~~~~~~~apE~~  685 (689)
                      .. .....++..|+|||++
T Consensus       160 ~~~~~~~~~~~~y~~PE~~  178 (267)
T cd06646         160 IAKRKSFIGTPYWMAPEVA  178 (267)
T ss_pred             ccccCccccCccccCHhHc
Confidence            22 1223466789999986

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.91  E-value=2.9e-24  Score=220.41  Aligned_cols=168  Identities=24%  Similarity=0.387  Sum_probs=142.3

Q ss_pred             CCCccceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEecc
Q 005587          510 SFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYC  589 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~  589 (689)
                      +|++.+.||+|+||.||+|.++++..+|+|.+.....   ....+.+|++++++++||||+++++++...+..++||||+
T Consensus         5 ~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~---~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~   81 (256)
T cd05059           5 ELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAM---SEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYM   81 (256)
T ss_pred             HcchhhhhccCCCceEEEeEecCCccEEEEEeccCCC---CHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEecC
Confidence            4677889999999999999887778899999865432   2456888999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCc
Q 005587          590 SNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSV  669 (689)
Q Consensus       590 ~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~  669 (689)
                      ++++|.+++....   ..+++..++.|+.|+++||.|||+.   +|+||||||+||++++++.+||+|||+++...+...
T Consensus        82 ~~~~L~~~l~~~~---~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~  155 (256)
T cd05059          82 ANGCLLNYLRERK---GKLGTEWLLDMCSDVCEAMEYLESN---GFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQY  155 (256)
T ss_pred             CCCCHHHHHHhcc---cCCCHHHHHHHHHHHHHHHHHHHHC---CcccccccHhhEEECCCCcEEECCcccceecccccc
Confidence            9999999997532   3689999999999999999999987   899999999999999999999999999987754332


Q ss_pred             cee--ecccceEEeccccc
Q 005587          670 SQV--SHNLTIMRAGGVTH  686 (689)
Q Consensus       670 ~~~--~~~~~~~~apE~~~  686 (689)
                      ...  ......|+|||.+.
T Consensus       156 ~~~~~~~~~~~y~~Pe~~~  174 (256)
T cd05059         156 TSSQGTKFPVKWAPPEVFD  174 (256)
T ss_pred             cccCCCCCCccccCHHHhc
Confidence            211  11123599999874

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.91  E-value=3.7e-24  Score=221.21  Aligned_cols=166  Identities=26%  Similarity=0.354  Sum_probs=134.7

Q ss_pred             eEeecCCeEEEEEEeCC---CcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccCCC
Q 005587          516 LIGAGMLGSVYRAQLPD---GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNG  592 (689)
Q Consensus       516 ~iG~G~~G~Vy~~~~~~---g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~gg  592 (689)
                      .||+|+||.||+|...+   ...+|+|.+.... .......|.+|++.++.++||||+++++++...+..++||||+++|
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~-~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~g   80 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASA-TPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLG   80 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccC-ChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCCC
Confidence            58999999999996543   3568888775432 2344567889999999999999999999999999999999999999


Q ss_pred             CHHHHHhcCccc-CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCc--
Q 005587          593 TLQDMLHSDDEL-KNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSV--  669 (689)
Q Consensus       593 sL~~~l~~~~~~-~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~--  669 (689)
                      +|.+++...... ....++...+.++.||+.||+|||+.   +|+||||||+|||+++++.+||+|||+++.......  
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~  157 (269)
T cd05042          81 DLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQA---DFIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYI  157 (269)
T ss_pred             cHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhc---CEecccccHhheEecCCCcEEEeccccccccccchhee
Confidence            999999764321 23456788899999999999999987   899999999999999999999999999976543321  


Q ss_pred             -ceeecccceEEecccc
Q 005587          670 -SQVSHNLTIMRAGGVT  685 (689)
Q Consensus       670 -~~~~~~~~~~~apE~~  685 (689)
                       ......+..|+|||+.
T Consensus       158 ~~~~~~~~~~y~aPE~~  174 (269)
T cd05042         158 TKDCHAVPLRWLAPELV  174 (269)
T ss_pred             ccCCCCCcccccCHHHH
Confidence             1112234569999986

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.91  E-value=4.4e-24  Score=222.40  Aligned_cols=171  Identities=19%  Similarity=0.345  Sum_probs=145.2

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      ++|+..+.||+|+||.||+|+.. +|+.||+|++..........+.+.+|+.++++++|+||+++++++...+..++|||
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e   80 (286)
T cd07847           1 EKYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFE   80 (286)
T ss_pred             CceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEe
Confidence            46888899999999999999765 68999999986543323334567899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |++++.|..++..    ...+++..++.++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++..+...
T Consensus        81 ~~~~~~l~~~~~~----~~~~~~~~~~~~~~ql~~~l~~LH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~  153 (286)
T cd07847          81 YCDHTVLNELEKN----PRGVPEHLIKKIIWQTLQAVNFCHKH---NCIHRDVKPENILITKQGQIKLCDFGFARILTGP  153 (286)
T ss_pred             ccCccHHHHHHhC----CCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCChhhEEEcCCCcEEECccccceecCCC
Confidence            9999988887754    23589999999999999999999997   8999999999999999999999999999987654


Q ss_pred             Cc-ceeecccceEEeccccc
Q 005587          668 SV-SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~-~~~~~~~~~~~apE~~~  686 (689)
                      .. .....++..|+|||++.
T Consensus       154 ~~~~~~~~~~~~~~aPE~~~  173 (286)
T cd07847         154 GDDYTDYVATRWYRAPELLV  173 (286)
T ss_pred             cccccCcccccccCCHHHHh
Confidence            42 22234567899999863

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.91  E-value=4.5e-24  Score=233.03  Aligned_cols=174  Identities=26%  Similarity=0.377  Sum_probs=142.0

Q ss_pred             cCCCccceEeecCCeEEEEEEeC------CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCC-CCCcceecEEEEeCCe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP------DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR-HANIVELKGYCAEHGQ  581 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~-HpnIv~l~~~~~~~~~  581 (689)
                      ++|.+.+.||+|+||.||+|++.      .++.||||++..... ......+.+|++++.++. |||||+++++|...+.
T Consensus        37 ~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~-~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~~~~  115 (401)
T cd05107          37 DNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTAR-SSEKQALMSELKIMSHLGPHLNIVNLLGACTKGGP  115 (401)
T ss_pred             HHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCC-hhHHHHHHHHHHHHHhcCCCCCeEEEEEEEccCCC
Confidence            45777899999999999999753      346899999975432 233457889999999997 9999999999999999


Q ss_pred             EEEEEeccCCCCHHHHHhcCcc----------------------------------------------------------
Q 005587          582 RLLIYEYCSNGTLQDMLHSDDE----------------------------------------------------------  603 (689)
Q Consensus       582 ~~lV~Ey~~ggsL~~~l~~~~~----------------------------------------------------------  603 (689)
                      .++||||+++|+|.++++....                                                          
T Consensus       116 ~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (401)
T cd05107         116 IYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADYVPMQDM  195 (401)
T ss_pred             cEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccccCccchhcc
Confidence            9999999999999999975321                                                          


Q ss_pred             ------------------------------------cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEe
Q 005587          604 ------------------------------------LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILL  647 (689)
Q Consensus       604 ------------------------------------~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl  647 (689)
                                                          ....+++...+.|+.|++.||+|||+.   +|+||||||+|||+
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrdlkp~NiLl  272 (401)
T cd05107         196 KGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLASK---NCVHRDLAARNVLI  272 (401)
T ss_pred             hhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhcC---CcCcccCCcceEEE
Confidence                                                112477888999999999999999987   89999999999999


Q ss_pred             cCCCcEEEEeecCCccccCCCcc---eeecccceEEeccccc
Q 005587          648 DDDLAVSVSDCGLAPLISSGSVS---QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       648 ~~~~~~kl~DFGla~~~~~~~~~---~~~~~~~~~~apE~~~  686 (689)
                      ++++.+||+|||+++.+......   ....++..|+|||.+.
T Consensus       273 ~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~  314 (401)
T cd05107         273 CEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIF  314 (401)
T ss_pred             eCCCEEEEEecCcceecccccccccCCCcCCCCceeChHHhc
Confidence            99999999999999876433211   1123345699999874

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.91  E-value=3.2e-24  Score=223.67  Aligned_cols=182  Identities=24%  Similarity=0.321  Sum_probs=149.3

Q ss_pred             cchhhHhhhccCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcC-CCCCcceecEEE
Q 005587          499 FTIASLQQYTNSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHANIVELKGYC  576 (689)
Q Consensus       499 ~~~~~l~~~~~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~  576 (689)
                      +.++++....++|++.+.||+|+||.||+|... +++.+|+|++....   .....+..|+.+++++ +||||+++++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~---~~~~~~~~e~~~l~~l~~h~~i~~~~~~~   84 (286)
T cd06638           8 IIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIH---DIDEEIEAEYNILKALSDHPNVVKFYGMY   84 (286)
T ss_pred             EEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeecccc---chHHHHHHHHHHHHHHhcCCCeeeeeeee
Confidence            445667778889999999999999999999654 68899999875432   2245677899999998 699999999988


Q ss_pred             E-----eCCeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCC
Q 005587          577 A-----EHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDL  651 (689)
Q Consensus       577 ~-----~~~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~  651 (689)
                      .     ..+..++||||+++|+|.+++.........+++..+..++.|+++||.|||+.   +|+||||||+||++++++
T Consensus        85 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nili~~~~  161 (286)
T cd06638          85 YKKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVN---KTIHRDVKGNNILLTTEG  161 (286)
T ss_pred             eecccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhC---CccccCCCHHhEEECCCC
Confidence            4     34578999999999999998864322245688999999999999999999987   899999999999999999


Q ss_pred             cEEEEeecCCccccCCCc-ceeecccceEEeccccc
Q 005587          652 AVSVSDCGLAPLISSGSV-SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       652 ~~kl~DFGla~~~~~~~~-~~~~~~~~~~~apE~~~  686 (689)
                      .+||+|||+++.+..... .....++..|+|||++.
T Consensus       162 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~  197 (286)
T cd06638         162 GVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIA  197 (286)
T ss_pred             CEEEccCCceeecccCCCccccccCCCcccChhhhc
Confidence            999999999987654332 22335677899999863

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.91  E-value=6.1e-24  Score=222.40  Aligned_cols=169  Identities=26%  Similarity=0.353  Sum_probs=146.5

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccC-ChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      ++|.+.+.||+|+||.||++... +++.||+|.+..... .......+.+|++++++++||||+++++++...+..++||
T Consensus         1 ~~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   80 (290)
T cd05580           1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVM   80 (290)
T ss_pred             CceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEE
Confidence            36888899999999999999764 689999999865432 2234567889999999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      ||+++++|.+++...    ..+++..+..++.|+++||.|||+.   +|+|+||+|+||+++.++.+||+|||+++....
T Consensus        81 e~~~~~~L~~~~~~~----~~l~~~~~~~~~~qil~~l~~lH~~---~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~  153 (290)
T cd05580          81 EYVPGGELFSHLRKS----GRFPEPVARFYAAQVVLALEYLHSL---DIVYRDLKPENLLLDSDGYIKITDFGFAKRVKG  153 (290)
T ss_pred             ecCCCCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEeeCCCccccCC
Confidence            999999999999763    4688999999999999999999987   899999999999999999999999999998765


Q ss_pred             CCcceeecccceEEeccccc
Q 005587          667 GSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 ~~~~~~~~~~~~~~apE~~~  686 (689)
                      ..  ....++..|+|||.+.
T Consensus       154 ~~--~~~~~~~~y~aPE~~~  171 (290)
T cd05580         154 RT--YTLCGTPEYLAPEIIL  171 (290)
T ss_pred             CC--CCCCCCccccChhhhc
Confidence            52  2345678899999863

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.91  E-value=8.1e-24  Score=220.15  Aligned_cols=164  Identities=18%  Similarity=0.285  Sum_probs=140.9

Q ss_pred             CCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          510 SFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      +|+..++||+|+||.||+|.. .+++.||+|.+.... ......++.+|++++++++||||+++++++...+..++||||
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   80 (279)
T cd06619           2 DIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDI-TVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTEF   80 (279)
T ss_pred             cchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCC-ChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEec
Confidence            577889999999999999965 578999999986543 234456788999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      +++|+|..+.        .+++..+..++.|++.||.|||+.   +|+|+||||+|||++.++.+||+|||++..+....
T Consensus        81 ~~~~~l~~~~--------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~~  149 (279)
T cd06619          81 MDGGSLDVYR--------KIPEHVLGRIAVAVVKGLTYLWSL---KILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSI  149 (279)
T ss_pred             CCCCChHHhh--------cCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCCHHHEEECCCCCEEEeeCCcceeccccc
Confidence            9999996542        367888899999999999999987   89999999999999999999999999998765443


Q ss_pred             cceeecccceEEeccccc
Q 005587          669 VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       669 ~~~~~~~~~~~~apE~~~  686 (689)
                      .. ...++..|+|||++.
T Consensus       150 ~~-~~~~~~~y~aPE~~~  166 (279)
T cd06619         150 AK-TYVGTNAYMAPERIS  166 (279)
T ss_pred             cc-CCCCChhhcCceeec
Confidence            22 245677899999874

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=1.3e-24  Score=223.72  Aligned_cols=166  Identities=27%  Similarity=0.397  Sum_probs=139.3

Q ss_pred             CCCccceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhc--CCCCCcceecEEEEeC----CeEE
Q 005587          510 SFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDR--IRHANIVELKGYCAEH----GQRL  583 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~--l~HpnIv~l~~~~~~~----~~~~  583 (689)
                      ...+.+.||+|.||.||+|+| .|+.||||++..     .+++.+.+|.++.+.  |||+||..+++.-..+    .++|
T Consensus       212 qI~L~e~IGkGRyGEVwrG~w-rGe~VAVKiF~s-----rdE~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLw  285 (513)
T KOG2052|consen  212 QIVLQEIIGKGRFGEVWRGRW-RGEDVAVKIFSS-----RDERSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLW  285 (513)
T ss_pred             eeEEEEEecCccccceeeccc-cCCceEEEEecc-----cchhhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEEE
Confidence            345678999999999999999 578899999853     345678888888765  5999999998876543    3689


Q ss_pred             EEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhC-----CCCCcEEecccCCCeEecCCCcEEEEee
Q 005587          584 LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI-----CQPPIVHRNFKSANILLDDDLAVSVSDC  658 (689)
Q Consensus       584 lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~-----~~~~iiHrDlKp~NILl~~~~~~kl~DF  658 (689)
                      ||+||.++|||+|+|..     ..++-...++++..+|.||+|||..     +.|.|.|||||+.|||+..++.+.|+|+
T Consensus       286 LvTdYHe~GSL~DyL~r-----~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADL  360 (513)
T KOG2052|consen  286 LVTDYHEHGSLYDYLNR-----NTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADL  360 (513)
T ss_pred             EeeecccCCcHHHHHhh-----ccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeec
Confidence            99999999999999985     5688999999999999999999963     3567999999999999999999999999


Q ss_pred             cCCccccCCC-----cceeecccceEEeccccc
Q 005587          659 GLAPLISSGS-----VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       659 Gla~~~~~~~-----~~~~~~~~~~~~apE~~~  686 (689)
                      |||....+..     ..-...||.-|||||++.
T Consensus       361 GLAv~h~~~t~~idi~~N~rVGTKRYMAPEvLd  393 (513)
T KOG2052|consen  361 GLAVRHDSDTDTIDIPPNPRVGTKRYMAPEVLD  393 (513)
T ss_pred             eeeEEecccCCcccCCCCCccceeeccChHHhh
Confidence            9998765542     122356778899999984

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.91  E-value=6.4e-24  Score=219.63  Aligned_cols=172  Identities=22%  Similarity=0.381  Sum_probs=139.1

Q ss_pred             CccceEeecCCeEEEEEEeCC-Cc--EEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeC------CeE
Q 005587          512 SQENLIGAGMLGSVYRAQLPD-GK--LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEH------GQR  582 (689)
Q Consensus       512 ~~~~~iG~G~~G~Vy~~~~~~-g~--~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~------~~~  582 (689)
                      .+.+.||+|+||.||+|++.+ +.  .||+|.+..........+.+.+|+++++.++|+||+++++++...      ...
T Consensus         2 ~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   81 (272)
T cd05075           2 ALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSP   81 (272)
T ss_pred             ccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCc
Confidence            456889999999999997654 33  689999876544455667889999999999999999999987532      246


Q ss_pred             EEEEeccCCCCHHHHHhcCc--ccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecC
Q 005587          583 LLIYEYCSNGTLQDMLHSDD--ELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGL  660 (689)
Q Consensus       583 ~lV~Ey~~ggsL~~~l~~~~--~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGl  660 (689)
                      ++||||+++|+|.+++....  .....+++.....++.|++.||+|||+.   +|+||||||+|||+++++.+||+|||+
T Consensus        82 ~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~  158 (272)
T cd05075          82 VVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSK---SFIHRDLAARNCMLNENMNVCVADFGL  158 (272)
T ss_pred             EEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHC---CeeccccchhheEEcCCCCEEECCCCc
Confidence            89999999999999875322  1234589999999999999999999987   899999999999999999999999999


Q ss_pred             CccccCCCcc---eeecccceEEeccccc
Q 005587          661 APLISSGSVS---QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       661 a~~~~~~~~~---~~~~~~~~~~apE~~~  686 (689)
                      ++.+......   .....+..|+|||...
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~pe~~~  187 (272)
T cd05075         159 SKKIYNGDYYRQGRIAKMPVKWIAIESLA  187 (272)
T ss_pred             ccccCcccceecCCcccCCcccCCHHHcc
Confidence            9987554321   1123345699999874

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.91  E-value=3.5e-24  Score=220.94  Aligned_cols=175  Identities=22%  Similarity=0.332  Sum_probs=148.3

Q ss_pred             cCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccC-ChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      ++|++.+.||+|+||.||+|.. .+++.+|||.+..... ......++.+|+++++.++|+||+++++++...+..++||
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL   81 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEE
Confidence            4678889999999999999975 5789999998865332 2334567889999999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      ||+++++|.+++.........+++..++.++.|+++||.|||+.   +++|+||||+||+++.++.++|+|||++..+..
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~  158 (267)
T cd08229          82 ELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGRFFSS  158 (267)
T ss_pred             EecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEECcchhhhcccc
Confidence            99999999999875333345689999999999999999999987   899999999999999999999999999988765


Q ss_pred             CCcc-eeecccceEEeccccc
Q 005587          667 GSVS-QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 ~~~~-~~~~~~~~~~apE~~~  686 (689)
                      .... ....++..|+|||.+.
T Consensus       159 ~~~~~~~~~~~~~~~ape~~~  179 (267)
T cd08229         159 KTTAAHSLVGTPYYMSPERIH  179 (267)
T ss_pred             CCcccccccCCcCccCHHHhc
Confidence            4322 2235677899999874

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.91  E-value=7e-24  Score=217.30  Aligned_cols=172  Identities=18%  Similarity=0.306  Sum_probs=148.1

Q ss_pred             CCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          510 SFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      +|+..+.||+|+||.||.++. .+++.+++|.+............+.+|++++++++|+||+++++++.+.+..++||||
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e~   80 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEY   80 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEEe
Confidence            477889999999999999964 4689999999876554455567788999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      +++|+|.+++....  ...+++..+..++.|+++||.|||+.   +++|+||||+||++++++.+||+|||+++......
T Consensus        81 ~~~~~L~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~  155 (256)
T cd08221          81 ANGGTLYDKIVRQK--GQLFEEEMVLWYLFQIVSAVSYIHKA---GILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEY  155 (256)
T ss_pred             cCCCcHHHHHHhcc--ccCCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChHhEEEeCCCCEEECcCcceEEccccc
Confidence            99999999997542  34688999999999999999999987   89999999999999999999999999998775543


Q ss_pred             -cceeecccceEEeccccc
Q 005587          669 -VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       669 -~~~~~~~~~~~~apE~~~  686 (689)
                       ......++..|+|||.+.
T Consensus       156 ~~~~~~~~~~~y~ape~~~  174 (256)
T cd08221         156 SMAETVVGTPYYMSPELCQ  174 (256)
T ss_pred             ccccccCCCccccCHhhcC
Confidence             222344677899999873

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.91  E-value=7e-24  Score=216.85  Aligned_cols=165  Identities=24%  Similarity=0.383  Sum_probs=137.9

Q ss_pred             ceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccCCCC
Q 005587          515 NLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGT  593 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~ggs  593 (689)
                      +.||+|+||.||+|... +++.||+|.+.... .......+.+|++++++++||||+++++++...+..++||||+++++
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   79 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETL-PPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGD   79 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccC-CHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCCc
Confidence            36899999999999764 78999999876443 23445678999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCccee-
Q 005587          594 LQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQV-  672 (689)
Q Consensus       594 L~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~~-  672 (689)
                      |.+++...   ...+++..++.++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||++.....+..... 
T Consensus        80 L~~~~~~~---~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~  153 (252)
T cd05084          80 FLTFLRTE---GPRLKVKELIQMVENAAAGMEYLESK---HCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTG  153 (252)
T ss_pred             HHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccchheEEEcCCCcEEECccccCcccccccccccC
Confidence            99998753   23588999999999999999999987   899999999999999999999999999987654322111 


Q ss_pred             --ecccceEEeccccc
Q 005587          673 --SHNLTIMRAGGVTH  686 (689)
Q Consensus       673 --~~~~~~~~apE~~~  686 (689)
                        ......|+|||.+.
T Consensus       154 ~~~~~~~~y~aPE~~~  169 (252)
T cd05084         154 GMKQIPVKWTAPEALN  169 (252)
T ss_pred             CCCCCceeecCchhhc
Confidence              11124599999863

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.91  E-value=6.1e-24  Score=219.74  Aligned_cols=167  Identities=28%  Similarity=0.314  Sum_probs=137.0

Q ss_pred             eEeecCCeEEEEEEeCC---CcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccCCC
Q 005587          516 LIGAGMLGSVYRAQLPD---GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNG  592 (689)
Q Consensus       516 ~iG~G~~G~Vy~~~~~~---g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~gg  592 (689)
                      .||+|+||.||+|...+   +..+|+|.+..... ......+.+|+.++++++||||+++++++.+....++||||+++|
T Consensus         2 ~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g   80 (269)
T cd05087           2 EIGNGWFGKVILGEVNSGYTPAQVVVKELRVSAS-VQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLG   80 (269)
T ss_pred             cccccCCceEEEEEEcCCCCceEEEEEecCCCCC-hHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCCC
Confidence            58999999999997543   46799998865432 334457889999999999999999999999999999999999999


Q ss_pred             CHHHHHhcCcc-cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCcce
Q 005587          593 TLQDMLHSDDE-LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQ  671 (689)
Q Consensus       593 sL~~~l~~~~~-~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~  671 (689)
                      +|.+++..... .....++..+..++.|++.||+|||+.   +++||||||+||+++.++.+||+|||+++.........
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~  157 (269)
T cd05087          81 DLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKN---NFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYYV  157 (269)
T ss_pred             cHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHC---CEeccccCcceEEEcCCCcEEECCccccccccCcceee
Confidence            99999975332 123567788889999999999999987   89999999999999999999999999998654433211


Q ss_pred             ---eecccceEEeccccc
Q 005587          672 ---VSHNLTIMRAGGVTH  686 (689)
Q Consensus       672 ---~~~~~~~~~apE~~~  686 (689)
                         ...++..|+|||++.
T Consensus       158 ~~~~~~~~~~y~aPE~~~  175 (269)
T cd05087         158 TPDQLWVPLRWIAPELVD  175 (269)
T ss_pred             cCCCcCCcccccCHhHhc
Confidence               123456699999874

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.91  E-value=6.6e-24  Score=226.24  Aligned_cols=170  Identities=19%  Similarity=0.266  Sum_probs=140.2

Q ss_pred             ccceEeec--CCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEecc
Q 005587          513 QENLIGAG--MLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYC  589 (689)
Q Consensus       513 ~~~~iG~G--~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~  589 (689)
                      +.++||+|  +|++||++.. .+|+.||+|++..........+.+.+|+++++.++||||+++++++..++..++||||+
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~   81 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFM   81 (327)
T ss_pred             hhhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEecc
Confidence            45789999  6889999965 57899999999765544445567788999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC-
Q 005587          590 SNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS-  668 (689)
Q Consensus       590 ~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~-  668 (689)
                      ++|+|.+++....  ...+++..++.++.|++.||.|||+.   +|+||||||+|||++.++.++++|||.+..+.... 
T Consensus        82 ~~~~l~~~~~~~~--~~~l~~~~~~~i~~qi~~~L~~LH~~---~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~~~  156 (327)
T cd08227          82 AYGSAKDLICTHF--MDGMSELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSNLSMINHGQ  156 (327)
T ss_pred             CCCcHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCChhhEEEecCCcEEEcccchhhccccccc
Confidence            9999999986532  23588999999999999999999987   89999999999999999999999998755432211 


Q ss_pred             -------cceeecccceEEecccccc
Q 005587          669 -------VSQVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       669 -------~~~~~~~~~~~~apE~~~~  687 (689)
                             ......++..|+|||++..
T Consensus       157 ~~~~~~~~~~~~~~~~~y~aPE~~~~  182 (327)
T cd08227         157 RLRVVHDFPKYSVKVLPWLSPEVLQQ  182 (327)
T ss_pred             cccccccccccccceecccChHHhhc
Confidence                   1122344566999999853

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.91  E-value=3.9e-24  Score=219.61  Aligned_cols=168  Identities=23%  Similarity=0.374  Sum_probs=142.7

Q ss_pred             CCCccceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEecc
Q 005587          510 SFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYC  589 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~  589 (689)
                      +|.+.+.||+|+||.||+|++.++..+|||.+.....   ....|.+|+.++.+++||||+++++++...+..++||||+
T Consensus         5 ~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   81 (256)
T cd05113           5 DLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM---SEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYM   81 (256)
T ss_pred             HeEEeeEecCcccceEEEEEecCCCcEEEEEcCCCcc---cHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEEcC
Confidence            5677889999999999999887777899999865432   2457899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCc
Q 005587          590 SNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSV  669 (689)
Q Consensus       590 ~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~  669 (689)
                      .+|+|.+++....   ..+++..++.++.|++.||.|||+.   +++|+||||+||++++++.+||+|||+++.+.....
T Consensus        82 ~~~~l~~~i~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~  155 (256)
T cd05113          82 SNGCLLNYLREHG---KRFQPSQLLEMCKDVCEGMAYLESK---QFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEY  155 (256)
T ss_pred             CCCcHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHHhC---CeeccccCcceEEEcCCCCEEECCCccceecCCCce
Confidence            9999999987532   2589999999999999999999987   899999999999999999999999999987755432


Q ss_pred             cee--ecccceEEeccccc
Q 005587          670 SQV--SHNLTIMRAGGVTH  686 (689)
Q Consensus       670 ~~~--~~~~~~~~apE~~~  686 (689)
                      ...  ..++..|++||.+.
T Consensus       156 ~~~~~~~~~~~y~~pe~~~  174 (256)
T cd05113         156 TSSVGSKFPVRWSPPEVLL  174 (256)
T ss_pred             eecCCCccChhhCCHHHHh
Confidence            211  12234699999874

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.91  E-value=4.6e-24  Score=224.94  Aligned_cols=174  Identities=25%  Similarity=0.420  Sum_probs=140.6

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCc--EEEEEEeccccCChhhHHHHHHHHHHHhcC-CCCCcceecEEEEeCCeEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGK--LLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHANIVELKGYCAEHGQRLL  584 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~--~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~~~~~~l  584 (689)
                      ++|++.+.||+|+||.||+|.+. ++.  .+|+|.+.... .......+.+|++++.++ +||||+++++++...+..|+
T Consensus         7 ~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~l   85 (303)
T cd05088           7 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYA-SKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYL   85 (303)
T ss_pred             hhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccC-CHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCceE
Confidence            57888899999999999999764 454  45777765432 234556788999999999 89999999999999999999


Q ss_pred             EEeccCCCCHHHHHhcCcc------------cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCc
Q 005587          585 IYEYCSNGTLQDMLHSDDE------------LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLA  652 (689)
Q Consensus       585 V~Ey~~ggsL~~~l~~~~~------------~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~  652 (689)
                      ||||+++|+|.++++....            ....+++.+++.++.|+++||+|||+.   +|+||||||+|||+++++.
T Consensus        86 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~---gi~H~dlkp~Nili~~~~~  162 (303)
T cd05088          86 AIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYV  162 (303)
T ss_pred             EEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhC---CccccccchheEEecCCCc
Confidence            9999999999999975431            123578999999999999999999987   8999999999999999999


Q ss_pred             EEEEeecCCccccCCCcceeecccceEEeccccc
Q 005587          653 VSVSDCGLAPLISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       653 ~kl~DFGla~~~~~~~~~~~~~~~~~~~apE~~~  686 (689)
                      +||+|||+++................|+|||.+.
T Consensus       163 ~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~  196 (303)
T cd05088         163 AKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLN  196 (303)
T ss_pred             EEeCccccCcccchhhhcccCCCcccccCHHHHh
Confidence            9999999997543222111122234699999864

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.91  E-value=5.6e-24  Score=223.24  Aligned_cols=174  Identities=23%  Similarity=0.385  Sum_probs=142.5

Q ss_pred             cCCCccceEeecCCeEEEEEEeCC---------------CcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceec
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPD---------------GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELK  573 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~~---------------g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~  573 (689)
                      ++|++.+.||+|+||.||+|+...               ...||+|.+.... .......|.+|++++++++|+||++++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~ei~~l~~l~h~~i~~~~   83 (295)
T cd05097           5 QQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADV-TKTARNDFLKEIKIMSRLKNPNIIRLL   83 (295)
T ss_pred             HhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCC-CHHHHHHHHHHHHHHHhCCCCCcCeEE
Confidence            478889999999999999986532               2358999987543 234456789999999999999999999


Q ss_pred             EEEEeCCeEEEEEeccCCCCHHHHHhcCcc--------cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCe
Q 005587          574 GYCAEHGQRLLIYEYCSNGTLQDMLHSDDE--------LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANI  645 (689)
Q Consensus       574 ~~~~~~~~~~lV~Ey~~ggsL~~~l~~~~~--------~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NI  645 (689)
                      +++...+..++||||+.+++|.+++.....        ....+++..++.++.|+++||.|||+.   +++||||||+||
T Consensus        84 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~i~H~dlkp~Ni  160 (295)
T cd05097          84 GVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASL---NFVHRDLATRNC  160 (295)
T ss_pred             EEEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhc---CeeccccChhhE
Confidence            999999999999999999999999865321        012478899999999999999999987   899999999999


Q ss_pred             EecCCCcEEEEeecCCccccCCCccee---ecccceEEeccccc
Q 005587          646 LLDDDLAVSVSDCGLAPLISSGSVSQV---SHNLTIMRAGGVTH  686 (689)
Q Consensus       646 Ll~~~~~~kl~DFGla~~~~~~~~~~~---~~~~~~~~apE~~~  686 (689)
                      ++++++.+||+|||+++.+........   ..+...|+|||+..
T Consensus       161 ll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  204 (295)
T cd05097         161 LVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESIL  204 (295)
T ss_pred             EEcCCCcEEecccccccccccCcceeccCcCcCceeecChhhhc
Confidence            999999999999999987654432211   12245799999864

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.91  E-value=8.6e-24  Score=218.34  Aligned_cols=171  Identities=25%  Similarity=0.433  Sum_probs=142.7

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-C---CcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-D---GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLL  584 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~---g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~l  584 (689)
                      ++|++.+.||+|+||.||+|... +   +..+|+|.+..... ....+.+.+|+.++++++||||+++++++...+..++
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   82 (267)
T cd05066           4 SCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYT-EKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMI   82 (267)
T ss_pred             HHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCC-HHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEE
Confidence            46788899999999999999653 2   34799999865432 3345688999999999999999999999999999999


Q ss_pred             EEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccc
Q 005587          585 IYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI  664 (689)
Q Consensus       585 V~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~  664 (689)
                      ||||+++|+|.+++....   ..+++.+++.|+.|++.||.|||+.   +++||||||+|||++.++.++|+|||+++.+
T Consensus        83 v~e~~~~~~L~~~~~~~~---~~~~~~~~~~i~~~i~~~l~~lH~~---~i~h~dlkp~nili~~~~~~~l~dfg~~~~~  156 (267)
T cd05066          83 VTEYMENGSLDAFLRKHD---GQFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILVNSNLVCKVSDFGLSRVL  156 (267)
T ss_pred             EEEcCCCCCHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHHHC---CEeehhhchhcEEECCCCeEEeCCCCccccc
Confidence            999999999999997532   3578999999999999999999987   8999999999999999999999999999987


Q ss_pred             cCCCcceee-c---ccceEEeccccc
Q 005587          665 SSGSVSQVS-H---NLTIMRAGGVTH  686 (689)
Q Consensus       665 ~~~~~~~~~-~---~~~~~~apE~~~  686 (689)
                      ......... .   .+..|+|||.+.
T Consensus       157 ~~~~~~~~~~~~~~~~~~y~~pe~~~  182 (267)
T cd05066         157 EDDPEAAYTTRGGKIPIRWTAPEAIA  182 (267)
T ss_pred             ccccceeeecCCCccceeecCHhHhc
Confidence            654322111 1   124699999874

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.91  E-value=7.5e-24  Score=223.25  Aligned_cols=175  Identities=22%  Similarity=0.394  Sum_probs=143.7

Q ss_pred             ccCCCccceEeecCCeEEEEEEeC--------CCcEEEEEEeccccCChhhHHHHHHHHHHHhcC-CCCCcceecEEEEe
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQLP--------DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHANIVELKGYCAE  578 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~~~--------~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~  578 (689)
                      .++|.+.+.||+|+||.||+|+..        ++..||+|.+.... .......+.+|+.+++.+ +||||+++++++..
T Consensus        14 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~-~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~   92 (304)
T cd05101          14 RDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDA-TEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ   92 (304)
T ss_pred             HHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeeccccc-chHHHHHHHHHHHHHHhhccCCCchheeEEEec
Confidence            356788899999999999999631        24579999886542 234456788999999999 89999999999999


Q ss_pred             CCeEEEEEeccCCCCHHHHHhcCcc------------cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeE
Q 005587          579 HGQRLLIYEYCSNGTLQDMLHSDDE------------LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANIL  646 (689)
Q Consensus       579 ~~~~~lV~Ey~~ggsL~~~l~~~~~------------~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NIL  646 (689)
                      .+..|+||||+++|+|.+++.....            ....+++..++.++.|+++||.|||+.   +|+||||||+||+
T Consensus        93 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~---givH~dlkp~Nil  169 (304)
T cd05101          93 DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQ---KCIHRDLAARNVL  169 (304)
T ss_pred             CCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHC---CeeecccccceEE
Confidence            9999999999999999999976421            123578899999999999999999987   8999999999999


Q ss_pred             ecCCCcEEEEeecCCccccCCCccee---ecccceEEeccccc
Q 005587          647 LDDDLAVSVSDCGLAPLISSGSVSQV---SHNLTIMRAGGVTH  686 (689)
Q Consensus       647 l~~~~~~kl~DFGla~~~~~~~~~~~---~~~~~~~~apE~~~  686 (689)
                      +++++.+||+|||+++.+........   ..++..|+|||++.
T Consensus       170 i~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  212 (304)
T cd05101         170 VTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALF  212 (304)
T ss_pred             EcCCCcEEECCCccceecccccccccccCCCCCceeeCchhhc
Confidence            99999999999999998755332221   22335699999874

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.91  E-value=4.5e-25  Score=236.56  Aligned_cols=169  Identities=22%  Similarity=0.370  Sum_probs=142.8

Q ss_pred             cceEeecCCeEEEEEEe-CCCcEEEEEEecccc--CChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCe--EEEEEec
Q 005587          514 ENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRA--SSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQ--RLLIYEY  588 (689)
Q Consensus       514 ~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~--~~lV~Ey  588 (689)
                      .++||+|+|-+||+|.. .+|.+||--.++...  ......+.|..|+.+|+.|+|||||++|.+|.+...  .-+|+|.
T Consensus        45 ~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iTEL  124 (632)
T KOG0584|consen   45 DEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFITEL  124 (632)
T ss_pred             hhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeeeec
Confidence            46899999999999954 468888765444322  233445889999999999999999999999987554  7799999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEec-CCCcEEEEeecCCccccCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLD-DDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~-~~~~~kl~DFGla~~~~~~  667 (689)
                      |..|+|..|.++.    +.++......|++||++||.|||++ .|+|||||||-+||+|+ ..|.+||+|.|||+.+...
T Consensus       125 ~TSGtLr~Y~kk~----~~vn~kaik~W~RQILkGL~yLHs~-~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~s  199 (632)
T KOG0584|consen  125 FTSGTLREYRKKH----RRVNIKAIKSWCRQILKGLVYLHSQ-DPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRKS  199 (632)
T ss_pred             ccCCcHHHHHHHh----ccCCHHHHHHHHHHHHHHhhhhhcC-CCCccccccccceEEEcCCcCceeecchhHHHHhhcc
Confidence            9999999999875    3577889999999999999999997 68999999999999997 5789999999999998765


Q ss_pred             CcceeecccceEEeccccccC
Q 005587          668 SVSQVSHNLTIMRAGGVTHRN  688 (689)
Q Consensus       668 ~~~~~~~~~~~~~apE~~~~~  688 (689)
                      .... ..||+.|||||+.--+
T Consensus       200 ~aks-vIGTPEFMAPEmYEE~  219 (632)
T KOG0584|consen  200 HAKS-VIGTPEFMAPEMYEEN  219 (632)
T ss_pred             ccce-eccCccccChHHHhhh
Confidence            5444 7899999999997433

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.91  E-value=9.9e-24  Score=219.84  Aligned_cols=167  Identities=28%  Similarity=0.458  Sum_probs=139.7

Q ss_pred             CCccceEeecCCeEEEEEEe-----CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeC--CeEE
Q 005587          511 FSQENLIGAGMLGSVYRAQL-----PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEH--GQRL  583 (689)
Q Consensus       511 f~~~~~iG~G~~G~Vy~~~~-----~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~--~~~~  583 (689)
                      |+..+.||+|+||+||++..     .++..||+|.+..... ......+.+|++++++++||||+++++++...  ...+
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~   84 (283)
T cd05080           6 LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECG-QQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQ   84 (283)
T ss_pred             ceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccC-hHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEE
Confidence            37789999999999988642     3578899999865432 33456788999999999999999999998764  4689


Q ss_pred             EEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcc
Q 005587          584 LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPL  663 (689)
Q Consensus       584 lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~  663 (689)
                      +||||+++|+|.+++..     ..+++..++.|+.|+++||.|||+.   +|+||||||+|||+++++.+||+|||+++.
T Consensus        85 lv~e~~~~~~l~~~~~~-----~~l~~~~~~~i~~~l~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~~~~  156 (283)
T cd05080          85 LIMEYVPLGSLRDYLPK-----HKLNLAQLLLFAQQICEGMAYLHSQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAKA  156 (283)
T ss_pred             EEecCCCCCCHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccChheEEEcCCCcEEEeecccccc
Confidence            99999999999999874     3589999999999999999999987   899999999999999999999999999998


Q ss_pred             ccCCCc----ceeecccceEEeccccc
Q 005587          664 ISSGSV----SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       664 ~~~~~~----~~~~~~~~~~~apE~~~  686 (689)
                      +..+..    .....+..+|+|||++.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~PE~~~  183 (283)
T cd05080         157 VPEGHEYYRVREDGDSPVFWYAVECLK  183 (283)
T ss_pred             cCCcchhhccCCCCCCCceeeCHhHhc
Confidence            765432    12234456799999874

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.91  E-value=6.8e-24  Score=223.97  Aligned_cols=174  Identities=25%  Similarity=0.394  Sum_probs=142.8

Q ss_pred             cCCCccceEeecCCeEEEEEEeC--------CCcEEEEEEeccccCChhhHHHHHHHHHHHhcC-CCCCcceecEEEEeC
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP--------DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHANIVELKGYCAEH  579 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~--------~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~~  579 (689)
                      ++|.+.+.||+|+||.||+|...        ++..+|+|.+..... .....++.+|++++.++ +||||+++++++...
T Consensus        18 ~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~   96 (307)
T cd05098          18 DRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDAT-EKDLSDLISEMEMMKMIGKHKNIINLLGACTQD   96 (307)
T ss_pred             HHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCC-hHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecC
Confidence            46888999999999999999642        235799999875432 33456788899999999 799999999999999


Q ss_pred             CeEEEEEeccCCCCHHHHHhcCcc------------cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEe
Q 005587          580 GQRLLIYEYCSNGTLQDMLHSDDE------------LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILL  647 (689)
Q Consensus       580 ~~~~lV~Ey~~ggsL~~~l~~~~~------------~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl  647 (689)
                      +..|+||||+++|+|.+++.....            ....++|.++++++.|++.||+|||+.   +++||||||+||++
T Consensus        97 ~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~---gi~H~dlkp~Nill  173 (307)
T cd05098          97 GPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLV  173 (307)
T ss_pred             CceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHC---CcccccccHHheEE
Confidence            999999999999999999976431            123589999999999999999999987   89999999999999


Q ss_pred             cCCCcEEEEeecCCccccCCCcceee---cccceEEeccccc
Q 005587          648 DDDLAVSVSDCGLAPLISSGSVSQVS---HNLTIMRAGGVTH  686 (689)
Q Consensus       648 ~~~~~~kl~DFGla~~~~~~~~~~~~---~~~~~~~apE~~~  686 (689)
                      +.++.+||+|||+++.+.........   .....|+|||++.
T Consensus       174 ~~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~  215 (307)
T cd05098         174 TEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALF  215 (307)
T ss_pred             cCCCcEEECCCcccccccccchhhccccCCCccceeChHHhc
Confidence            99999999999999876543322111   1234699999874

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.91  E-value=6.5e-24  Score=222.29  Aligned_cols=175  Identities=23%  Similarity=0.410  Sum_probs=144.6

Q ss_pred             ccCCCccceEeecCCeEEEEEEeC------CCcEEEEEEeccccCChhhHHHHHHHHHHHhcC-CCCCcceecEEEEeCC
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQLP------DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHANIVELKGYCAEHG  580 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~~~  580 (689)
                      .++|+..+.||+|+||.||++...      ....+|+|.+..... ......+.+|++++.++ +|+||+++++++...+
T Consensus        11 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~-~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~   89 (293)
T cd05053          11 RDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDAT-EKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQEG   89 (293)
T ss_pred             HhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCC-HHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCCC
Confidence            356888899999999999999753      236899999875433 33456788999999999 8999999999999999


Q ss_pred             eEEEEEeccCCCCHHHHHhcCc------------ccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEec
Q 005587          581 QRLLIYEYCSNGTLQDMLHSDD------------ELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLD  648 (689)
Q Consensus       581 ~~~lV~Ey~~ggsL~~~l~~~~------------~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~  648 (689)
                      ..++||||+++|+|.++++...            .....+++..++.++.|++.||.|||+.   +|+||||||+|||++
T Consensus        90 ~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~Nil~~  166 (293)
T cd05053          90 PLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASK---KCIHRDLAARNVLVT  166 (293)
T ss_pred             CeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHC---CccccccceeeEEEc
Confidence            9999999999999999997532            1234689999999999999999999987   899999999999999


Q ss_pred             CCCcEEEEeecCCccccCCCcceee---cccceEEeccccc
Q 005587          649 DDLAVSVSDCGLAPLISSGSVSQVS---HNLTIMRAGGVTH  686 (689)
Q Consensus       649 ~~~~~kl~DFGla~~~~~~~~~~~~---~~~~~~~apE~~~  686 (689)
                      +++.+||+|||+++.+.........   .....|+|||++.
T Consensus       167 ~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  207 (293)
T cd05053         167 EDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALF  207 (293)
T ss_pred             CCCeEEeCccccccccccccceeccCCCCCCccccCHHHhc
Confidence            9999999999999987654332211   1234699999863

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.91  E-value=9.1e-24  Score=218.36  Aligned_cols=173  Identities=25%  Similarity=0.409  Sum_probs=141.5

Q ss_pred             CCccceEeecCCeEEEEEEeCC----CcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCe-----
Q 005587          511 FSQENLIGAGMLGSVYRAQLPD----GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQ-----  581 (689)
Q Consensus       511 f~~~~~iG~G~~G~Vy~~~~~~----g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~-----  581 (689)
                      |.+.+.||+|+||.||+|....    +..||||++............+.+|++.++.++||||+++++++...+.     
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   80 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIP   80 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCc
Confidence            5677899999999999997542    3689999987655445556789999999999999999999999876554     


Q ss_pred             -EEEEEeccCCCCHHHHHhcCcc--cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEee
Q 005587          582 -RLLIYEYCSNGTLQDMLHSDDE--LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDC  658 (689)
Q Consensus       582 -~~lV~Ey~~ggsL~~~l~~~~~--~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DF  658 (689)
                       .++||||+++|+|.+++.....  ....+++..+..++.|++.||.|||+.   +|+||||||+||++++++.+||+||
T Consensus        81 ~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~df  157 (273)
T cd05035          81 KPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNR---NFIHRDLAARNCMLREDMTVCVADF  157 (273)
T ss_pred             ccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhC---CeeccccchheEEECCCCeEEECCc
Confidence             7999999999999999865321  234689999999999999999999987   8999999999999999999999999


Q ss_pred             cCCccccCCCcce---eecccceEEeccccc
Q 005587          659 GLAPLISSGSVSQ---VSHNLTIMRAGGVTH  686 (689)
Q Consensus       659 Gla~~~~~~~~~~---~~~~~~~~~apE~~~  686 (689)
                      |+++.+.......   ....+..|+|||++.
T Consensus       158 g~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~  188 (273)
T cd05035         158 GLSKKIYSGDYYRQGRIAKMPVKWIAIESLA  188 (273)
T ss_pred             cceeeccccccccccccccCCccccCHhhcc
Confidence            9998775443211   112234699999874

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.91  E-value=7.8e-24  Score=220.44  Aligned_cols=174  Identities=26%  Similarity=0.428  Sum_probs=143.5

Q ss_pred             cCCCccceEeecCCeEEEEEEeCC------CcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPD------GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQR  582 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~~------g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~  582 (689)
                      ++|++.+.||+|+||.||+|....      ...||+|.+.... .......|.+|++.+++++||||+++++++...+..
T Consensus         5 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~-~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~   83 (283)
T cd05048           5 SAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENA-EPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPT   83 (283)
T ss_pred             HHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCC-CHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCCce
Confidence            367788999999999999997533      2579999986543 234456789999999999999999999999999999


Q ss_pred             EEEEeccCCCCHHHHHhcCcc------------cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCC
Q 005587          583 LLIYEYCSNGTLQDMLHSDDE------------LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDD  650 (689)
Q Consensus       583 ~lV~Ey~~ggsL~~~l~~~~~------------~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~  650 (689)
                      +++|||+++|+|.+++.....            ....+++...+.++.|++.||.|||+.   +|+||||||+||+++++
T Consensus        84 ~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~---~i~H~dlkp~Nil~~~~  160 (283)
T cd05048          84 CMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSH---HFVHRDLAARNCLVGEG  160 (283)
T ss_pred             EEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccccccceEEEcCC
Confidence            999999999999999975321            114588899999999999999999997   89999999999999999


Q ss_pred             CcEEEEeecCCccccCCCcce---eecccceEEeccccc
Q 005587          651 LAVSVSDCGLAPLISSGSVSQ---VSHNLTIMRAGGVTH  686 (689)
Q Consensus       651 ~~~kl~DFGla~~~~~~~~~~---~~~~~~~~~apE~~~  686 (689)
                      +.+||+|||+++.........   ...++..|+|||.+.
T Consensus       161 ~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  199 (283)
T cd05048         161 LTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAIL  199 (283)
T ss_pred             CcEEECCCcceeeccccccccccCCCcccccccCHHHhc
Confidence            999999999998764433211   123346699999864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.91  E-value=5e-24  Score=228.13  Aligned_cols=174  Identities=27%  Similarity=0.393  Sum_probs=140.1

Q ss_pred             cCCCccceEeecCCeEEEEEEeC------CCcEEEEEEeccccCChhhHHHHHHHHHHHhcC-CCCCcceecEEEEeC-C
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP------DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHANIVELKGYCAEH-G  580 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~~-~  580 (689)
                      ++|++.+.||+|+||.||+|...      +++.||+|++..... ......+.+|+.++.++ +|+||++++++|... .
T Consensus         7 ~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~-~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~~   85 (337)
T cd05054           7 DRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGAT-ASEYKALMTELKILIHIGHHLNVVNLLGACTKPGG   85 (337)
T ss_pred             HHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCC-HHHHHHHHHHHHHHHhhccCcchhheeeeEecCCC
Confidence            47888999999999999999532      357899999865432 33446678899999999 899999999988754 5


Q ss_pred             eEEEEEeccCCCCHHHHHhcCccc--------------------------------------------------------
Q 005587          581 QRLLIYEYCSNGTLQDMLHSDDEL--------------------------------------------------------  604 (689)
Q Consensus       581 ~~~lV~Ey~~ggsL~~~l~~~~~~--------------------------------------------------------  604 (689)
                      ..+++|||+++|+|.+++......                                                        
T Consensus        86 ~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (337)
T cd05054          86 PLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDEL  165 (337)
T ss_pred             CEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchhhhHH
Confidence            688999999999999998643210                                                        


Q ss_pred             -CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCcce---eecccceEE
Q 005587          605 -KNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQ---VSHNLTIMR  680 (689)
Q Consensus       605 -~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~---~~~~~~~~~  680 (689)
                       ...++|..+..++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+++.+.......   ...++..|+
T Consensus       166 ~~~~l~~~~~~~~~~qi~~aL~~lH~~---~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~  242 (337)
T cd05054         166 YKEPLTLEDLISYSFQVARGMEFLASR---KCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWM  242 (337)
T ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCcccc
Confidence             13689999999999999999999987   89999999999999999999999999999875433211   112234699


Q ss_pred             eccccc
Q 005587          681 AGGVTH  686 (689)
Q Consensus       681 apE~~~  686 (689)
                      |||++.
T Consensus       243 aPE~~~  248 (337)
T cd05054         243 APESIF  248 (337)
T ss_pred             CcHHhc
Confidence            999763

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.91  E-value=7.2e-24  Score=227.52  Aligned_cols=173  Identities=25%  Similarity=0.391  Sum_probs=139.3

Q ss_pred             cCCCccceEeecCCeEEEEEEe------CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcC-CCCCcceecEEEEeC-C
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL------PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHANIVELKGYCAEH-G  580 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~------~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~~-~  580 (689)
                      ++|++.+.||+|+||.||+|..      .+++.||||++..... ......+.+|+.++.++ +||||+++++++... .
T Consensus         7 ~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~   85 (343)
T cd05103           7 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT-HSEHRALMSELKILIHIGHHLNVVNLLGACTKPGG   85 (343)
T ss_pred             hHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCC-hHHHHHHHHHHHHHHhccCCccHhhhcceeecCCC
Confidence            5788999999999999999963      3578899999875432 23456788999999999 689999999988764 4


Q ss_pred             eEEEEEeccCCCCHHHHHhcCcc---------------------------------------------------------
Q 005587          581 QRLLIYEYCSNGTLQDMLHSDDE---------------------------------------------------------  603 (689)
Q Consensus       581 ~~~lV~Ey~~ggsL~~~l~~~~~---------------------------------------------------------  603 (689)
                      ..++||||+++|+|.+++.....                                                         
T Consensus        86 ~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (343)
T cd05103          86 PLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEE  165 (343)
T ss_pred             ceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccchhhh
Confidence            67899999999999999875321                                                         


Q ss_pred             ------cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCcce---eec
Q 005587          604 ------LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQ---VSH  674 (689)
Q Consensus       604 ------~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~---~~~  674 (689)
                            ....+++..+..++.|+++||+|||+.   +|+||||||+|||+++++.+||+|||+++.+.......   ...
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~  242 (343)
T cd05103         166 AEQEDLYKKVLTLEDLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDAR  242 (343)
T ss_pred             hhhhhhhhccCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCCCC
Confidence                  012478889999999999999999987   89999999999999999999999999998764332111   112


Q ss_pred             ccceEEecccc
Q 005587          675 NLTIMRAGGVT  685 (689)
Q Consensus       675 ~~~~~~apE~~  685 (689)
                      .+..|+|||++
T Consensus       243 ~~~~y~aPE~~  253 (343)
T cd05103         243 LPLKWMAPETI  253 (343)
T ss_pred             CCcceECcHHh
Confidence            23469999986

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.91  E-value=8e-24  Score=222.35  Aligned_cols=174  Identities=25%  Similarity=0.393  Sum_probs=140.5

Q ss_pred             cCCCccceEeecCCeEEEEEEeCC-Cc--EEEEEEeccccCChhhHHHHHHHHHHHhcC-CCCCcceecEEEEeCCeEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPD-GK--LLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHANIVELKGYCAEHGQRLL  584 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~~-g~--~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~~~~~~l  584 (689)
                      ++|++.+.||+|+||.||+|...+ +.  .+++|.+.... .....+.+.+|++++.++ +||||+++++++...+..++
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~l   80 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFA-SENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYI   80 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccC-CHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceE
Confidence            578889999999999999997653 33  47888876422 234456788999999999 79999999999999999999


Q ss_pred             EEeccCCCCHHHHHhcCcc------------cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCc
Q 005587          585 IYEYCSNGTLQDMLHSDDE------------LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLA  652 (689)
Q Consensus       585 V~Ey~~ggsL~~~l~~~~~------------~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~  652 (689)
                      ||||+++|+|.++++....            ....+++..++.|+.|++.||+|||+.   +|+||||||+|||+++++.
T Consensus        81 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nill~~~~~  157 (297)
T cd05089          81 AIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEK---QFIHRDLAARNVLVGENLA  157 (297)
T ss_pred             EEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCcCCcceEEECCCCe
Confidence            9999999999999975321            123588999999999999999999987   8999999999999999999


Q ss_pred             EEEEeecCCccccCCCcceeecccceEEeccccc
Q 005587          653 VSVSDCGLAPLISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       653 ~kl~DFGla~~~~~~~~~~~~~~~~~~~apE~~~  686 (689)
                      +||+|||++.................|+|||+..
T Consensus       158 ~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~  191 (297)
T cd05089         158 SKIADFGLSRGEEVYVKKTMGRLPVRWMAIESLN  191 (297)
T ss_pred             EEECCcCCCccccceeccCCCCcCccccCchhhc
Confidence            9999999997543222111122234599999863

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.91  E-value=1.1e-23  Score=244.35  Aligned_cols=170  Identities=22%  Similarity=0.285  Sum_probs=146.4

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccC-ChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      ++|.+.+.||+|+||.||+|... +++.||||++..... .......+.+|+.++..++||||+++++++...+..|+||
T Consensus         4 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lVm   83 (669)
T cd05610           4 EEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLVM   83 (669)
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEEE
Confidence            57888999999999999999765 689999999875432 2334567889999999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      ||+.|++|.+++...    ..+++..++.|+.||+.||.|||..   +||||||||+|||++.++.+||+|||+++....
T Consensus        84 Ey~~g~~L~~li~~~----~~l~~~~~~~i~~qil~aL~yLH~~---gIiHrDLKP~NILl~~~g~vkL~DFGls~~~~~  156 (669)
T cd05610          84 EYLIGGDVKSLLHIY----GYFDEEMAVKYISEVALALDYLHRH---GIIHRDLKPDNMLISNEGHIKLTDFGLSKVTLN  156 (669)
T ss_pred             eCCCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCccHHHEEEcCCCCEEEEeCCCCccccC
Confidence            999999999999753    3578899999999999999999987   899999999999999999999999999998765


Q ss_pred             CC-cceeecccceEEecccc
Q 005587          667 GS-VSQVSHNLTIMRAGGVT  685 (689)
Q Consensus       667 ~~-~~~~~~~~~~~~apE~~  685 (689)
                      .. ......+++.|++||..
T Consensus       157 ~~~~~~~~~~t~~~~~pe~~  176 (669)
T cd05610         157 RELNMMDILTTPSMAKPKND  176 (669)
T ss_pred             CcccccccccCccccCcccc
Confidence            43 22345677788888865

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.91  E-value=8.7e-24  Score=220.21  Aligned_cols=172  Identities=21%  Similarity=0.318  Sum_probs=143.1

Q ss_pred             CCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      +|++.+.||+|+||.||+|+.. ++..||||.+............+.+|+.++++++||||+++++++...+..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFEF   80 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEec
Confidence            4777899999999999999764 689999999865443333456788899999999999999999999999999999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      ++ ++|.+++..... ...+++..+..++.|+++||.|||+.   +|+||||||+||++++++.+||+|||++.......
T Consensus        81 ~~-~~l~~~~~~~~~-~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~  155 (285)
T cd07861          81 LS-MDLKKYLDSLPK-GQYMDAELVKSYLYQILQGILFCHSR---RVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPV  155 (285)
T ss_pred             CC-CCHHHHHhcCCC-CCcCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCCHHHEEEcCCCcEEECcccceeecCCCc
Confidence            97 689888865322 34689999999999999999999987   89999999999999999999999999998664332


Q ss_pred             cc-eeecccceEEeccccc
Q 005587          669 VS-QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       669 ~~-~~~~~~~~~~apE~~~  686 (689)
                      .. ....++..|+|||++.
T Consensus       156 ~~~~~~~~~~~y~aPE~~~  174 (285)
T cd07861         156 RVYTHEVVTLWYRAPEVLL  174 (285)
T ss_pred             ccccCCcccccccChHHhc
Confidence            11 1223467799999863

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.91  E-value=1.2e-23  Score=216.80  Aligned_cols=170  Identities=22%  Similarity=0.388  Sum_probs=143.5

Q ss_pred             CCCccceEeecCCeEEEEEEeCCCcEEEEEEeccccCC----hhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEE
Q 005587          510 SFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASS----QQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLI  585 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~----~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV  585 (689)
                      +|...+.||+|+||.||+|...+|+.+|||.+......    ......+.+|++++++++|+||+++++++...+..++|
T Consensus         1 ~~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv   80 (265)
T cd06631           1 EWTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIF   80 (265)
T ss_pred             CccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEE
Confidence            36778999999999999998888999999988654221    22335688999999999999999999999999999999


Q ss_pred             EeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcccc
Q 005587          586 YEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS  665 (689)
Q Consensus       586 ~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~  665 (689)
                      |||+++++|.+++...    ..+++..+..++.|++.||+|||+.   +|+|+||||+||++++++.+||+|||++..+.
T Consensus        81 ~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  153 (265)
T cd06631          81 MEFVPGGSISSILNRF----GPLPEPVFCKYTKQILDGVAYLHNN---CVVHRDIKGNNVMLMPNGIIKLIDFGCARRLA  153 (265)
T ss_pred             EecCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcCHHhEEECCCCeEEeccchhhHhhh
Confidence            9999999999999753    3578899999999999999999987   89999999999999999999999999998653


Q ss_pred             CCC-------cceeecccceEEeccccc
Q 005587          666 SGS-------VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       666 ~~~-------~~~~~~~~~~~~apE~~~  686 (689)
                      ...       ......++..|+|||++.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~pe~~~  181 (265)
T cd06631         154 WVGLHGTHSNMLKSMHGTPYWMAPEVIN  181 (265)
T ss_pred             hccccccccccccccCCCccccChhhhc
Confidence            211       111234667899999874

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.91  E-value=1e-23  Score=218.08  Aligned_cols=167  Identities=26%  Similarity=0.376  Sum_probs=134.4

Q ss_pred             eEeecCCeEEEEEEeCCC---cEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccCCC
Q 005587          516 LIGAGMLGSVYRAQLPDG---KLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNG  592 (689)
Q Consensus       516 ~iG~G~~G~Vy~~~~~~g---~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~gg  592 (689)
                      .||+|+||.||+|+..++   ..+++|.+..... ....+.|.+|+.+++.++||||+++++++......++||||+++|
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~   80 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANAS-SKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCELG   80 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCC-hHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCCC
Confidence            589999999999975443   3456666654322 344678999999999999999999999999999999999999999


Q ss_pred             CHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC---c
Q 005587          593 TLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS---V  669 (689)
Q Consensus       593 sL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~---~  669 (689)
                      +|.++++.........++.....++.||++||+|||+.   +|+||||||+|||++.++.+||+|||++.......   .
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~---~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~  157 (268)
T cd05086          81 DLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKH---NFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIET  157 (268)
T ss_pred             cHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHC---CeeccCCccceEEEcCCccEEecccccccccCcchhhhc
Confidence            99999986433334567778889999999999999987   89999999999999999999999999987532211   1


Q ss_pred             ceeecccceEEeccccc
Q 005587          670 SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       670 ~~~~~~~~~~~apE~~~  686 (689)
                      .....++..|+|||++.
T Consensus       158 ~~~~~~~~~y~aPE~~~  174 (268)
T cd05086         158 EDDKCVPLRWLAPELVG  174 (268)
T ss_pred             ccCCcCcccccCchhcc
Confidence            11234456799999863

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.91  E-value=8.9e-24  Score=220.43  Aligned_cols=173  Identities=18%  Similarity=0.307  Sum_probs=145.9

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      ++|++.+.||+|+||.||+|... +|+.||+|.+.... .......+.+|++++++++||||+++++++...+..++|||
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~-~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   79 (286)
T cd06622           1 DEIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLEL-DESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCME   79 (286)
T ss_pred             ChhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeeccc-CHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEe
Confidence            35788899999999999999765 78999999886542 23345678899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+++++|.+++.... ....+++..+..++.|+++||.|||+.  .+|+||||||+||+++.++.+||+|||++..+...
T Consensus        80 ~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~LH~~--~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~  156 (286)
T cd06622          80 YMDAGSLDKLYAGGV-ATEGIPEDVLRRITYAVVKGLKFLKEE--HNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVAS  156 (286)
T ss_pred             ecCCCCHHHHHHhcc-ccCCCCHHHHHHHHHHHHHHHHHHHhc--CCEeeCCCCHHHEEECCCCCEEEeecCCcccccCC
Confidence            999999999887532 123689999999999999999999974  27999999999999999999999999999876443


Q ss_pred             CcceeecccceEEeccccc
Q 005587          668 SVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~~~~~~~~~~~~apE~~~  686 (689)
                      .. ....++..|+|||.+.
T Consensus       157 ~~-~~~~~~~~y~aPE~~~  174 (286)
T cd06622         157 LA-KTNIGCQSYMAPERIK  174 (286)
T ss_pred             cc-ccCCCccCccCcchhc
Confidence            32 2234667899999873

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.91  E-value=7.5e-24  Score=220.08  Aligned_cols=174  Identities=24%  Similarity=0.397  Sum_probs=144.4

Q ss_pred             cCCCccceEeecCCeEEEEEEeC------CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP------DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQR  582 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~  582 (689)
                      ++|.+.+.||+|+||.||+|...      +++.||||.+..... ......+.+|++++++++|+||+++++++...+..
T Consensus         5 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   83 (280)
T cd05049           5 DTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETAS-NDARKDFEREAELLTNFQHENIVKFYGVCTEGDPP   83 (280)
T ss_pred             HHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCC-HHHHHHHHHHHHHHHhcCCCCchheeeEEecCCCe
Confidence            45778899999999999999653      347899999865432 33457899999999999999999999999999999


Q ss_pred             EEEEeccCCCCHHHHHhcCcc----------cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCc
Q 005587          583 LLIYEYCSNGTLQDMLHSDDE----------LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLA  652 (689)
Q Consensus       583 ~lV~Ey~~ggsL~~~l~~~~~----------~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~  652 (689)
                      ++||||+++|+|.+++.....          ....+++..+..++.|++.||.|||+.   +++||||||+||+++.++.
T Consensus        84 ~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~---~i~h~dlkp~nili~~~~~  160 (280)
T cd05049          84 IMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQ---HFVHRDLATRNCLVGYDLV  160 (280)
T ss_pred             EEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeeccccccceEEEcCCCe
Confidence            999999999999999976421          124578999999999999999999987   8999999999999999999


Q ss_pred             EEEEeecCCccccCCCc---ceeecccceEEeccccc
Q 005587          653 VSVSDCGLAPLISSGSV---SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       653 ~kl~DFGla~~~~~~~~---~~~~~~~~~~~apE~~~  686 (689)
                      +||+|||+++.+.....   ......+..|+|||++.
T Consensus       161 ~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  197 (280)
T cd05049         161 VKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIM  197 (280)
T ss_pred             EEECCcccceecccCcceecCCCCcccceecChhhhc
Confidence            99999999986543321   11222345699999874

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.91  E-value=1.5e-23  Score=214.68  Aligned_cols=170  Identities=26%  Similarity=0.371  Sum_probs=145.9

Q ss_pred             CCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccC---ChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEE
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRAS---SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLI  585 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV  585 (689)
                      +|+..+.||+|+||.||+|... +++.|++|.+.....   .....+.+.+|++++++++|+||+++++++...+..++|
T Consensus         1 ~~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv   80 (258)
T cd06632           1 RWRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIF   80 (258)
T ss_pred             CccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEE
Confidence            3667789999999999999765 789999998865321   233456788999999999999999999999999999999


Q ss_pred             EeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcccc
Q 005587          586 YEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS  665 (689)
Q Consensus       586 ~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~  665 (689)
                      |||+++++|.+++...    ..+++..+..++.|+++||.|||+.   +|+|+||+|+||+++.++.+||+|||++....
T Consensus        81 ~e~~~~~~L~~~~~~~----~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~  153 (258)
T cd06632          81 LELVPGGSLAKLLKKY----GSFPEPVIRLYTRQILLGLEYLHDR---NTVHRDIKGANILVDTNGVVKLADFGMAKQVV  153 (258)
T ss_pred             EEecCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEccCccceecc
Confidence            9999999999999753    3578999999999999999999987   89999999999999999999999999998876


Q ss_pred             CCCcceeecccceEEeccccc
Q 005587          666 SGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       666 ~~~~~~~~~~~~~~~apE~~~  686 (689)
                      .........++..|++||.+.
T Consensus       154 ~~~~~~~~~~~~~y~~pe~~~  174 (258)
T cd06632         154 EFSFAKSFKGSPYWMAPEVIA  174 (258)
T ss_pred             ccccccccCCCcceeCHHHhc
Confidence            554333345677899999874

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.91  E-value=4.2e-24  Score=219.98  Aligned_cols=168  Identities=38%  Similarity=0.580  Sum_probs=137.1

Q ss_pred             ccceEeecCCeEEEEEEeC-----CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          513 QENLIGAGMLGSVYRAQLP-----DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       513 ~~~~iG~G~~G~Vy~~~~~-----~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      +.+.||.|.||.||+|.+.     .+..|+||.+... ......+.|.+|++.+++++||||++++|++...+..++|||
T Consensus         3 ~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~-~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e   81 (259)
T PF07714_consen    3 LIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPS-SSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVME   81 (259)
T ss_dssp             EEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTT-SSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE
T ss_pred             EeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccc-cccccceeeeeccccccccccccccccccccccccccccccc
Confidence            4578999999999999775     2578999999553 334457889999999999999999999999998888999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+++|+|.++|+...  ...+++..+..|+.||++||.|||+.   +|+|+||+++|||+++++.+||+|||+++.....
T Consensus        82 ~~~~g~L~~~L~~~~--~~~~~~~~~~~i~~~i~~~l~~Lh~~---~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~  156 (259)
T PF07714_consen   82 YCPGGSLDDYLKSKN--KEPLSEQQRLSIAIQIAEALSYLHSN---NIIHGNLSPSNILLDSNGQVKLSDFGLSRPISEK  156 (259)
T ss_dssp             --TTEBHHHHHHHTC--TTTSBHHHHHHHHHHHHHHHHHHHHT---TEEEST-SGGGEEEETTTEEEEESTTTGEETTTS
T ss_pred             ccccccccccccccc--cccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccc
Confidence            999999999998742  35689999999999999999999997   8999999999999999999999999999987433


Q ss_pred             Ccc---eeecccceEEeccccc
Q 005587          668 SVS---QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~~---~~~~~~~~~~apE~~~  686 (689)
                      ...   ........|+|||++.
T Consensus       157 ~~~~~~~~~~~~~~~~aPE~~~  178 (259)
T PF07714_consen  157 SKYKNDSSQQLPLRYLAPEVLK  178 (259)
T ss_dssp             SSEEESTTSESGGGGS-HHHHH
T ss_pred             cccccccccccccccccccccc
Confidence            222   1122345588999874

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.91  E-value=1.1e-23  Score=220.30  Aligned_cols=173  Identities=23%  Similarity=0.380  Sum_probs=143.4

Q ss_pred             cCCCccceEeecCCeEEEEEEe------CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL------PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQR  582 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~------~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~  582 (689)
                      ++|.+.+.||+|+||.||++..      .++..+|+|.+...  .......+.+|++++++++||||+++++++...+..
T Consensus         5 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   82 (288)
T cd05093           5 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA--SDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPL   82 (288)
T ss_pred             HHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCc--CHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCcc
Confidence            4688889999999999999964      23456899988643  234456789999999999999999999999999999


Q ss_pred             EEEEeccCCCCHHHHHhcCcc---------cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcE
Q 005587          583 LLIYEYCSNGTLQDMLHSDDE---------LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAV  653 (689)
Q Consensus       583 ~lV~Ey~~ggsL~~~l~~~~~---------~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~  653 (689)
                      ++||||+++++|.+++.....         ....+++..++.++.|++.||+|||+.   +++||||||+|||+++++.+
T Consensus        83 ~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~---~i~H~dlkp~Nili~~~~~~  159 (288)
T cd05093          83 IMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLLV  159 (288)
T ss_pred             EEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccCcceEEEccCCcE
Confidence            999999999999999975321         123589999999999999999999987   89999999999999999999


Q ss_pred             EEEeecCCccccCCCcce---eecccceEEeccccc
Q 005587          654 SVSDCGLAPLISSGSVSQ---VSHNLTIMRAGGVTH  686 (689)
Q Consensus       654 kl~DFGla~~~~~~~~~~---~~~~~~~~~apE~~~  686 (689)
                      ||+|||+++.+.......   ...++..|+|||++.
T Consensus       160 kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  195 (288)
T cd05093         160 KIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIM  195 (288)
T ss_pred             EeccCCccccccCCceeecCCCCCccccccCHHHhc
Confidence            999999998765433211   122345799999874

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=3.7e-25  Score=249.29  Aligned_cols=178  Identities=24%  Similarity=0.257  Sum_probs=154.2

Q ss_pred             hhHhhhccCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCC-hhhHHHHHHHHHHHhcCCCCCcceecEEEEeC
Q 005587          502 ASLQQYTNSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASS-QQKDDEFLELVNNIDRIRHANIVELKGYCAEH  579 (689)
Q Consensus       502 ~~l~~~~~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~  579 (689)
                      .+++.-.++|.+.++||+|+||.|..++++ +++.||+|++.+..+- ......|.+|-.+|...+.+-||.++-.|.+.
T Consensus        68 ~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~  147 (1317)
T KOG0612|consen   68 KELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQDE  147 (1317)
T ss_pred             HHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcCc
Confidence            345555678999999999999999999765 6889999999875433 23445688888999999999999999999999


Q ss_pred             CeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeec
Q 005587          580 GQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCG  659 (689)
Q Consensus       580 ~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG  659 (689)
                      .++|+|||||+||||-.++...+    .+++..++.|+..|.-||.-||+.   |+|||||||+|||||..|++||+|||
T Consensus       148 ~~LYlVMdY~pGGDlltLlSk~~----~~pE~~ArFY~aEiVlAldslH~m---gyVHRDiKPDNvLld~~GHikLADFG  220 (1317)
T KOG0612|consen  148 RYLYLVMDYMPGGDLLTLLSKFD----RLPEDWARFYTAEIVLALDSLHSM---GYVHRDIKPDNVLLDKSGHIKLADFG  220 (1317)
T ss_pred             cceEEEEecccCchHHHHHhhcC----CChHHHHHHHHHHHHHHHHHHHhc---cceeccCCcceeEecccCcEeeccch
Confidence            99999999999999999998642    689999999999999999999998   89999999999999999999999999


Q ss_pred             CCccccC-CC-cceeecccceEEeccccc
Q 005587          660 LAPLISS-GS-VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       660 la~~~~~-~~-~~~~~~~~~~~~apE~~~  686 (689)
                      -+-.+.. |. .+....||+-|.+|||+.
T Consensus       221 sClkm~~dG~V~s~~aVGTPDYISPEvLq  249 (1317)
T KOG0612|consen  221 SCLKMDADGTVRSSVAVGTPDYISPEVLQ  249 (1317)
T ss_pred             hHHhcCCCCcEEeccccCCCCccCHHHHH
Confidence            9887774 44 345577888899999983

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.91  E-value=1.2e-23  Score=219.41  Aligned_cols=170  Identities=23%  Similarity=0.398  Sum_probs=141.9

Q ss_pred             CCCccceEeecCCeEEEEEEe-----CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeC--CeE
Q 005587          510 SFSQENLIGAGMLGSVYRAQL-----PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEH--GQR  582 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~-----~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~--~~~  582 (689)
                      .|++.+.||+|+||.||+|.+     .++..||+|.+.... .......+.+|++++++++||||+++++++...  ...
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (284)
T cd05079           5 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPES-GGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI   83 (284)
T ss_pred             hhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccc-cHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCce
Confidence            467789999999999999964     357889999986543 233456789999999999999999999999875  578


Q ss_pred             EEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCc
Q 005587          583 LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAP  662 (689)
Q Consensus       583 ~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~  662 (689)
                      ++||||++|++|.+++...   ...++|..+..++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++
T Consensus        84 ~lv~e~~~g~~L~~~l~~~---~~~~~~~~~~~i~~~i~~aL~~lH~~---gi~H~dlkp~Nil~~~~~~~~l~dfg~~~  157 (284)
T cd05079          84 KLIMEFLPSGSLKEYLPRN---KNKINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLTK  157 (284)
T ss_pred             EEEEEccCCCCHHHHHHhc---cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccchheEEEcCCCCEEECCCcccc
Confidence            9999999999999998653   23589999999999999999999987   89999999999999999999999999998


Q ss_pred             cccCCCcc----eeecccceEEeccccc
Q 005587          663 LISSGSVS----QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       663 ~~~~~~~~----~~~~~~~~~~apE~~~  686 (689)
                      .+......    ....+...|+|||++.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~y~apE~~~  185 (284)
T cd05079         158 AIETDKEYYTVKDDLDSPVFWYAPECLI  185 (284)
T ss_pred             ccccCccceeecCCCCCCccccCHHHhc
Confidence            77543321    1233455699999864

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.91  E-value=6.4e-24  Score=219.14  Aligned_cols=168  Identities=27%  Similarity=0.380  Sum_probs=143.8

Q ss_pred             cCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      ++|.+.+.||+|+||.||+|.. .+++.||+|.++...  ......+.+|+.+++.++||||+++++++...+..|+|||
T Consensus         9 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~--~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~e   86 (267)
T cd06645           9 EDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEP--GEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICME   86 (267)
T ss_pred             HHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCc--hhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEEe
Confidence            4677889999999999999965 468999999986543  2334567889999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+++++|.+++...    ..+++.+++.++.|++.||.|||+.   +|+|+||||+||+++.++.+||+|||++..+...
T Consensus        87 ~~~~~~L~~~~~~~----~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~  159 (267)
T cd06645          87 FCGGGSLQDIYHVT----GPLSESQIAYVSRETLQGLYYLHSK---GKMHRDIKGANILLTDNGHVKLADFGVSAQITAT  159 (267)
T ss_pred             ccCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEECcceeeeEccCc
Confidence            99999999998753    4688999999999999999999987   8999999999999999999999999999866433


Q ss_pred             Cc-ceeecccceEEecccc
Q 005587          668 SV-SQVSHNLTIMRAGGVT  685 (689)
Q Consensus       668 ~~-~~~~~~~~~~~apE~~  685 (689)
                      .. .....++..|+|||++
T Consensus       160 ~~~~~~~~~~~~y~aPE~~  178 (267)
T cd06645         160 IAKRKSFIGTPYWMAPEVA  178 (267)
T ss_pred             ccccccccCcccccChhhh
Confidence            21 2224567889999986

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.91  E-value=9.1e-24  Score=217.66  Aligned_cols=169  Identities=25%  Similarity=0.402  Sum_probs=142.8

Q ss_pred             CCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      +|.+.+.||+|+||.||+|... +++.||+|.+....   ....++.+|++++++++|+||+++++++...+..++||||
T Consensus         7 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   83 (263)
T cd05052           7 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT---MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF   83 (263)
T ss_pred             HeEEeeecCCcccceEEEEEEecCCceEEEEEecCCc---hHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEEEEe
Confidence            4677889999999999999654 58899999986432   3356788999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      +++++|.+++....  ...+++..++.++.|+++||+|||+.   +++||||||+||++++++.+||+|||++.......
T Consensus        84 ~~~~~L~~~~~~~~--~~~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~  158 (263)
T cd05052          84 MTYGNLLDYLRECN--RQEVNAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT  158 (263)
T ss_pred             CCCCcHHHHHHhCC--CCCCCHHHHHHHHHHHHHHHHHHHhC---CEeecccCcceEEEcCCCcEEeCCCccccccccce
Confidence            99999999987533  34689999999999999999999987   89999999999999999999999999999876543


Q ss_pred             ccee--ecccceEEeccccc
Q 005587          669 VSQV--SHNLTIMRAGGVTH  686 (689)
Q Consensus       669 ~~~~--~~~~~~~~apE~~~  686 (689)
                      ....  ...+..|+|||.+.
T Consensus       159 ~~~~~~~~~~~~y~aPE~~~  178 (263)
T cd05052         159 YTAHAGAKFPIKWTAPESLA  178 (263)
T ss_pred             eeccCCCCCccccCCHHHhc
Confidence            2221  11234599999874

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.91  E-value=8e-24  Score=218.10  Aligned_cols=168  Identities=26%  Similarity=0.410  Sum_probs=141.1

Q ss_pred             cCCCccceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      ++|.+.+.||+|+||.||+|...++..||+|++.....   ....+.+|++++++++||||+++++++. .+..++||||
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~---~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~   81 (262)
T cd05071           6 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM---SPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVTEY   81 (262)
T ss_pred             HHeeEeeecCCCCCCcEEEEEecCCceEEEEecccCcc---CHHHHHHHHHHHHhCCCCCcceEEEEEC-CCCcEEEEEc
Confidence            46888999999999999999887777899999875332   3457889999999999999999999875 4568999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      +++|+|.+++....  ...+++..++.++.|+++||+|||+.   +|+||||||+||++++++.+||+|||+++.+....
T Consensus        82 ~~~~~L~~~~~~~~--~~~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~  156 (262)
T cd05071          82 MSKGSLLDFLKGEM--GKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE  156 (262)
T ss_pred             CCCCcHHHHHhhcc--ccCCCHHHHHHHHHHHHHHHHHHHHC---CccccccCcccEEEcCCCcEEeccCCceeeccccc
Confidence            99999999997532  34578999999999999999999987   89999999999999999999999999998776544


Q ss_pred             cce--eecccceEEecccc
Q 005587          669 VSQ--VSHNLTIMRAGGVT  685 (689)
Q Consensus       669 ~~~--~~~~~~~~~apE~~  685 (689)
                      ...  ...+...|++||..
T Consensus       157 ~~~~~~~~~~~~y~~PE~~  175 (262)
T cd05071         157 YTARQGAKFPIKWTAPEAA  175 (262)
T ss_pred             cccccCCcccceecCHhHh
Confidence            221  12234569999986

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.91  E-value=5.7e-24  Score=218.31  Aligned_cols=170  Identities=24%  Similarity=0.292  Sum_probs=148.1

Q ss_pred             CCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCC-hhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASS-QQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      +|++.+.||+|+||.||+|... +++.||+|.+.+.... ....+.+.+|++++++++||||+++++++...+..++|||
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVD   80 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEe
Confidence            4788899999999999999765 6899999998764332 2456788999999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+.+++|.+++...    ..+++..+..|+.|+++||.|||+.   +++|+||||+||++++++.++|+|||++......
T Consensus        81 ~~~~~~L~~~l~~~----~~l~~~~~~~~~~~i~~~l~~lh~~---~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~  153 (258)
T cd05578          81 LLLGGDLRYHLSQK----VKFSEEQVKFWICEIVLALEYLHSK---GIIHRDIKPDNILLDEQGHVHITDFNIATKVTPD  153 (258)
T ss_pred             CCCCCCHHHHHHhc----CCcCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeEEcCCCCEEEeecccccccCCC
Confidence            99999999999753    4688999999999999999999987   8999999999999999999999999999887665


Q ss_pred             CcceeecccceEEeccccc
Q 005587          668 SVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~~~~~~~~~~~~apE~~~  686 (689)
                      .......+...|+|||++.
T Consensus       154 ~~~~~~~~~~~y~~PE~~~  172 (258)
T cd05578         154 TLTTSTSGTPGYMAPEVLC  172 (258)
T ss_pred             ccccccCCChhhcCHHHHc
Confidence            4434455667799999874

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.91  E-value=1.5e-23  Score=214.06  Aligned_cols=165  Identities=24%  Similarity=0.407  Sum_probs=139.1

Q ss_pred             ceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccCCCCH
Q 005587          515 NLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTL  594 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~ggsL  594 (689)
                      ++||+|+||.||+|...++..||+|.+..... ......+.+|++++++++||||+++++++...+..++||||+++|+|
T Consensus         1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   79 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDLP-QELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDF   79 (250)
T ss_pred             CccCCCCCceEEEEEecCCcEEEEEecCCcCC-HHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCcH
Confidence            36899999999999888889999999865432 34455788999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCccee--
Q 005587          595 QDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQV--  672 (689)
Q Consensus       595 ~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~~--  672 (689)
                      .+++....   ..+++..++.++.|++.||.|+|+.   +++||||||+||+++.++.+||+|||++.....+.....  
T Consensus        80 ~~~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~---~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~  153 (250)
T cd05085          80 LSFLRKKK---DELKTKQLVKFALDAAAGMAYLESK---NCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSSSGL  153 (250)
T ss_pred             HHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccChheEEEcCCCeEEECCCccceeccccccccCCC
Confidence            99986532   3578999999999999999999987   899999999999999999999999999986554332211  


Q ss_pred             ecccceEEeccccc
Q 005587          673 SHNLTIMRAGGVTH  686 (689)
Q Consensus       673 ~~~~~~~~apE~~~  686 (689)
                      ......|+|||++.
T Consensus       154 ~~~~~~y~aPE~~~  167 (250)
T cd05085         154 KQIPIKWTAPEALN  167 (250)
T ss_pred             CCCcccccCHHHhc
Confidence            12234599999874

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.91  E-value=1.4e-23  Score=215.60  Aligned_cols=163  Identities=22%  Similarity=0.348  Sum_probs=136.1

Q ss_pred             eEeecCCeEEEEEEe---CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccCCC
Q 005587          516 LIGAGMLGSVYRAQL---PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNG  592 (689)
Q Consensus       516 ~iG~G~~G~Vy~~~~---~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~gg  592 (689)
                      .||+|+||.||+|.+   .++..+|+|++..........+++.+|+.++++++||||+++++++.. +..++||||+++|
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~lv~e~~~~~   80 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICEA-ESWMLVMELAELG   80 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCcEEEEecCCCC
Confidence            589999999999964   357899999987554444556789999999999999999999998864 5678999999999


Q ss_pred             CHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCccee
Q 005587          593 TLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQV  672 (689)
Q Consensus       593 sL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~~  672 (689)
                      +|.+++...    ..+++..+..++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++.+........
T Consensus        81 ~L~~~l~~~----~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~~~  153 (257)
T cd05116          81 PLNKFLQKN----KHVTEKNITELVHQVSMGMKYLEET---NFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYK  153 (257)
T ss_pred             cHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccchhhEEEcCCCeEEECCCccccccCCCCCeee
Confidence            999999752    4688999999999999999999987   899999999999999999999999999988755432211


Q ss_pred             ----ecccceEEeccccc
Q 005587          673 ----SHNLTIMRAGGVTH  686 (689)
Q Consensus       673 ----~~~~~~~~apE~~~  686 (689)
                          ...+..|+|||.+.
T Consensus       154 ~~~~~~~~~~y~aPE~~~  171 (257)
T cd05116         154 AKTHGKWPVKWYAPECMN  171 (257)
T ss_pred             ecCCCCCCccccCHhHhc
Confidence                11135799999764

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.91  E-value=1.2e-23  Score=215.93  Aligned_cols=177  Identities=23%  Similarity=0.372  Sum_probs=148.4

Q ss_pred             CCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEe--CCeEEEEE
Q 005587          510 SFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAE--HGQRLLIY  586 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~--~~~~~lV~  586 (689)
                      +|++.+.||.|+||.||++.. .+++.||+|.+..........+.+..|++++++++|+||+++++++..  ....+++|
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVM   80 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEe
Confidence            477789999999999999964 568899999987655555566778899999999999999999998764  45689999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCC--CCCcEEecccCCCeEecCCCcEEEEeecCCccc
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEIC--QPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI  664 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~--~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~  664 (689)
                      ||+++++|.+++.........+++..++.++.|+++||.|||..+  ..+|+|+||||+||++++++.+||+|||++..+
T Consensus        81 e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~g~~~~~  160 (265)
T cd08217          81 EYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKIL  160 (265)
T ss_pred             hhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEecccccccc
Confidence            999999999999764333457899999999999999999999332  238999999999999999999999999999988


Q ss_pred             cCCCc-ceeecccceEEeccccc
Q 005587          665 SSGSV-SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       665 ~~~~~-~~~~~~~~~~~apE~~~  686 (689)
                      ..... .....++..|++||++.
T Consensus       161 ~~~~~~~~~~~~~~~~~~pE~~~  183 (265)
T cd08217         161 GHDSSFAKTYVGTPYYMSPEQLN  183 (265)
T ss_pred             cCCcccccccccCCCccChhhhc
Confidence            66543 22345678899999874

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.91  E-value=1.4e-23  Score=220.28  Aligned_cols=169  Identities=23%  Similarity=0.345  Sum_probs=143.3

Q ss_pred             CCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCC---hhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEE
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASS---QQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLI  585 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~---~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV  585 (689)
                      +|+..+.||+|+||.||+|... +|+.||||.+......   ......+..|++++++++|+||+++++++...+..++|
T Consensus         1 ~y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv   80 (298)
T cd07841           1 RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLV   80 (298)
T ss_pred             CceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEE
Confidence            3777889999999999999764 6899999998765432   22345677899999999999999999999999999999


Q ss_pred             EeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcccc
Q 005587          586 YEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS  665 (689)
Q Consensus       586 ~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~  665 (689)
                      |||+ +|+|.+++....   ..+++..++.++.||++||.|||+.   +|+|+||||+||+++.++.+||+|||+++...
T Consensus        81 ~e~~-~~~L~~~i~~~~---~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~  153 (298)
T cd07841          81 FEFM-ETDLEKVIKDKS---IVLTPADIKSYMLMTLRGLEYLHSN---WILHRDLKPNNLLIASDGVLKLADFGLARSFG  153 (298)
T ss_pred             Eccc-CCCHHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCChhhEEEcCCCCEEEccceeeeecc
Confidence            9999 999999997532   3689999999999999999999987   89999999999999999999999999998876


Q ss_pred             CCCc-ceeecccceEEecccc
Q 005587          666 SGSV-SQVSHNLTIMRAGGVT  685 (689)
Q Consensus       666 ~~~~-~~~~~~~~~~~apE~~  685 (689)
                      .... ......+..|+|||++
T Consensus       154 ~~~~~~~~~~~~~~y~aPE~~  174 (298)
T cd07841         154 SPNRKMTHQVVTRWYRAPELL  174 (298)
T ss_pred             CCCccccccccceeeeCHHHH
Confidence            5432 2223446779999986

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.91  E-value=1e-23  Score=220.41  Aligned_cols=175  Identities=22%  Similarity=0.292  Sum_probs=142.0

Q ss_pred             ccCCCccceEeecCCeEEEEEEeC------CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCe
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQLP------DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQ  581 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~  581 (689)
                      .++|++.+.||+|+||.||+|..+      .+..||+|.+..... ......+.+|+.+++.++||||+++++++...+.
T Consensus         5 ~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   83 (288)
T cd05061           5 REKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESAS-LRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQP   83 (288)
T ss_pred             HHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCC-HHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC
Confidence            467889999999999999999643      245899998865432 2344568889999999999999999999999999


Q ss_pred             EEEEEeccCCCCHHHHHhcCcc------cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEE
Q 005587          582 RLLIYEYCSNGTLQDMLHSDDE------LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSV  655 (689)
Q Consensus       582 ~~lV~Ey~~ggsL~~~l~~~~~------~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl  655 (689)
                      .++||||+++|+|.+++.....      ......+..+..++.|++.||.|||+.   +|+||||||+||++++++.+||
T Consensus        84 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dikp~nili~~~~~~~L  160 (288)
T cd05061          84 TLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKI  160 (288)
T ss_pred             cEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCCChheEEEcCCCcEEE
Confidence            9999999999999999975321      123456778899999999999999987   8999999999999999999999


Q ss_pred             EeecCCccccCCCcce---eecccceEEeccccc
Q 005587          656 SDCGLAPLISSGSVSQ---VSHNLTIMRAGGVTH  686 (689)
Q Consensus       656 ~DFGla~~~~~~~~~~---~~~~~~~~~apE~~~  686 (689)
                      +|||+++.+.......   ...+...|+|||.+.
T Consensus       161 ~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~  194 (288)
T cd05061         161 GDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLK  194 (288)
T ss_pred             CcCCccccccccccccccCCCcccccccCHHHhc
Confidence            9999998764433211   112245699999863

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.91  E-value=1e-23  Score=223.60  Aligned_cols=165  Identities=21%  Similarity=0.301  Sum_probs=132.7

Q ss_pred             cceEeecCCeEEEEEEeC---CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEe--CCeEEEEEec
Q 005587          514 ENLIGAGMLGSVYRAQLP---DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAE--HGQRLLIYEY  588 (689)
Q Consensus       514 ~~~iG~G~~G~Vy~~~~~---~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~--~~~~~lV~Ey  588 (689)
                      .++||+|+||.||+|+..   +++.||+|.+.....    ...+.+|++++++++||||+++++++..  ....++||||
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~----~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~   81 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGI----SMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDY   81 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCCC----cHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEec
Confidence            468999999999999754   467899999865432    3456789999999999999999998864  4578999999


Q ss_pred             cCCCCHHHHHhcCcc-----cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEe----cCCCcEEEEeec
Q 005587          589 CSNGTLQDMLHSDDE-----LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILL----DDDLAVSVSDCG  659 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~-----~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl----~~~~~~kl~DFG  659 (689)
                      +. ++|.+++.....     ....+++..+..++.||+.||.|||+.   +|+||||||+|||+    +..+.+||+|||
T Consensus        82 ~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG  157 (317)
T cd07868          82 AE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVKIADMG  157 (317)
T ss_pred             cC-CCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhC---CEEcCCCCHHHEEEecCCCCcCcEEEeecC
Confidence            95 588888764321     123588999999999999999999987   89999999999999    456789999999


Q ss_pred             CCccccCCCcc----eeecccceEEeccccc
Q 005587          660 LAPLISSGSVS----QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       660 la~~~~~~~~~----~~~~~~~~~~apE~~~  686 (689)
                      +|+.+......    ....++..|+|||++.
T Consensus       158 ~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~  188 (317)
T cd07868         158 FARLFNSPLKPLADLDPVVVTFWYRAPELLL  188 (317)
T ss_pred             ceeccCCCCccccccCCccccccccCCHHHc
Confidence            99887543221    2235577899999874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.91  E-value=2.1e-23  Score=213.74  Aligned_cols=171  Identities=20%  Similarity=0.310  Sum_probs=145.0

Q ss_pred             CCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      +|++.+.||+|+||.||+++.. +++.+|+|.+..... ....+.+.+|+.+++.++|+||+++++++...+..|+||||
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   79 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKS-SSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEY   79 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcc-hHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEee
Confidence            4778899999999999999654 689999999865432 33456788899999999999999999999999999999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      +++|+|.+++....  ...+++...+.++.|++.||.|||+.   +|+|+||||+||++++++.++|+|||+++.+....
T Consensus        80 ~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~i~~al~~lH~~---~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~  154 (255)
T cd08219          80 CDGGDLMQKIKLQR--GKLFPEDTILQWFVQMCLGVQHIHEK---RVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPG  154 (255)
T ss_pred             CCCCcHHHHHHhcc--CCCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCcceEEECCCCcEEEcccCcceeecccc
Confidence            99999999886532  34578899999999999999999987   89999999999999999999999999998775433


Q ss_pred             c-ceeecccceEEeccccc
Q 005587          669 V-SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       669 ~-~~~~~~~~~~~apE~~~  686 (689)
                      . .....++..|+|||++.
T Consensus       155 ~~~~~~~~~~~~~aPE~~~  173 (255)
T cd08219         155 AYACTYVGTPYYVPPEIWE  173 (255)
T ss_pred             cccccccCCccccCHHHHc
Confidence            2 22345667799999873

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.91  E-value=1.5e-23  Score=218.42  Aligned_cols=170  Identities=23%  Similarity=0.324  Sum_probs=147.1

Q ss_pred             CCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      +|++.+.||+|+||.||+|... +|+.||||++............+.+|+.++++++||||+++++++...+..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~   80 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVMEY   80 (286)
T ss_pred             CceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEecc
Confidence            4778899999999999999764 689999999876544344456789999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      + +++|.+++....   ..+++.+++.++.|+++||+|||+.   +|+|+||||+||+++.++.++|+|||++.......
T Consensus        81 ~-~~~L~~~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~  153 (286)
T cd07832          81 M-PSDLSEVLRDEE---RPLPEAQVKSYMRMLLKGVAYMHAN---GIMHRDLKPANLLISADGVLKIADFGLARLFSEEE  153 (286)
T ss_pred             c-CCCHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCHHHEEEcCCCcEEEeeeeecccccCCC
Confidence            9 999999987532   5689999999999999999999987   89999999999999999999999999999876543


Q ss_pred             c--ceeecccceEEeccccc
Q 005587          669 V--SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       669 ~--~~~~~~~~~~~apE~~~  686 (689)
                      .  .....++..|+|||++.
T Consensus       154 ~~~~~~~~~~~~y~aPE~~~  173 (286)
T cd07832         154 PRLYSHQVATRWYRAPELLY  173 (286)
T ss_pred             CCccccccCcccccCceeee
Confidence            2  22345677899999863

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.91  E-value=1.4e-23  Score=219.70  Aligned_cols=182  Identities=28%  Similarity=0.396  Sum_probs=150.0

Q ss_pred             cchhhHhhhccCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcC-CCCCcceecEEE
Q 005587          499 FTIASLQQYTNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHANIVELKGYC  576 (689)
Q Consensus       499 ~~~~~l~~~~~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~  576 (689)
                      +++.++..+.++|.+.+.||+|+||.||+|.. .+++.+|+|.+....   .....+.+|+.++.++ +||||+++++++
T Consensus        12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~---~~~~~~~~e~~~l~~l~~h~ni~~~~~~~   88 (291)
T cd06639          12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPIS---DVDEEIEAEYNILQSLPNHPNVVKFYGMF   88 (291)
T ss_pred             hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccc---cHHHHHHHHHHHHHHhcCCCCeEEEEEEE
Confidence            45566667788999999999999999999976 468899999986432   2345677888999988 899999999998


Q ss_pred             EeC-----CeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCC
Q 005587          577 AEH-----GQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDL  651 (689)
Q Consensus       577 ~~~-----~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~  651 (689)
                      ...     +..++||||+++|+|.++++........+++..++.++.|++.||+|||+.   +|+||||||+||++++++
T Consensus        89 ~~~~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dlkp~nili~~~~  165 (291)
T cd06639          89 YKADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNN---RIIHRDVKGNNILLTTEG  165 (291)
T ss_pred             EeccccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEEcCCC
Confidence            754     368999999999999998875333345689999999999999999999987   899999999999999999


Q ss_pred             cEEEEeecCCccccCCCc-ceeecccceEEeccccc
Q 005587          652 AVSVSDCGLAPLISSGSV-SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       652 ~~kl~DFGla~~~~~~~~-~~~~~~~~~~~apE~~~  686 (689)
                      .+||+|||+++.+..... .....++..|+|||++.
T Consensus       166 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~  201 (291)
T cd06639         166 GVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIA  201 (291)
T ss_pred             CEEEeecccchhcccccccccCccCCccccChhhhc
Confidence            999999999987654332 22234567799999863

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.91  E-value=8.4e-24  Score=218.76  Aligned_cols=172  Identities=24%  Similarity=0.404  Sum_probs=143.4

Q ss_pred             hccCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcC-CCCCcceecEEEEeC-----
Q 005587          507 YTNSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHANIVELKGYCAEH-----  579 (689)
Q Consensus       507 ~~~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~~-----  579 (689)
                      +.+.|+..+.||+|+||.||+|... +++.||+|++....   .....+..|+.++.++ +|+||+++++++...     
T Consensus         4 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~---~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~   80 (272)
T cd06637           4 PAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG---DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGM   80 (272)
T ss_pred             hhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCC---ccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCC
Confidence            4567888899999999999999754 68899999986542   2345678899999988 799999999998753     


Q ss_pred             -CeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEee
Q 005587          580 -GQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDC  658 (689)
Q Consensus       580 -~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DF  658 (689)
                       ...|+||||+.+|+|.+++....  ...+++..+..++.|++.||.|||+.   +|+||||||+||++++++.+||+||
T Consensus        81 ~~~~~iv~e~~~~~~L~~~l~~~~--~~~l~~~~~~~~~~qi~~~l~~LH~~---~ivh~dl~~~nili~~~~~~~l~Df  155 (272)
T cd06637          81 DDQLWLVMEFCGAGSVTDLIKNTK--GNTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKLVDF  155 (272)
T ss_pred             CcEEEEEEEcCCCCcHHHHHHhcc--CCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHEEECCCCCEEEccC
Confidence             46899999999999999987632  34688999999999999999999987   8999999999999999999999999


Q ss_pred             cCCccccCCC-cceeecccceEEeccccc
Q 005587          659 GLAPLISSGS-VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       659 Gla~~~~~~~-~~~~~~~~~~~~apE~~~  686 (689)
                      |+++.+.... ......++..|+|||++.
T Consensus       156 g~~~~~~~~~~~~~~~~g~~~y~aPE~~~  184 (272)
T cd06637         156 GVSAQLDRTVGRRNTFIGTPYWMAPEVIA  184 (272)
T ss_pred             CCceecccccccCCcccccccccCHhHhc
Confidence            9998764432 222345677899999873

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.91  E-value=1.6e-23  Score=214.73  Aligned_cols=167  Identities=28%  Similarity=0.438  Sum_probs=144.0

Q ss_pred             cCCCccceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      ++|++.+.||+|+||.||+|... |+.||+|.+.....   ...++.+|+.++++++|+||+++++++...+..++||||
T Consensus         6 ~~~~~~~~ig~g~~g~v~~~~~~-~~~v~iK~~~~~~~---~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   81 (256)
T cd05039           6 KELKLGATIGKGEFGDVMLGDYR-GQKVAVKCLKDDST---AAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEY   81 (256)
T ss_pred             hhccceeeeecCCCceEEEEEec-CcEEEEEEeccchh---HHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEEEe
Confidence            46788899999999999999874 78999999865432   456788999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      +++++|.+++....  ...+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||+++......
T Consensus        82 ~~~~~L~~~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lh~~---~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~  156 (256)
T cd05039          82 MAKGSLVDYLRSRG--RAVITLAQQLGFALDVCEGMEYLEEK---NFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQ  156 (256)
T ss_pred             cCCCcHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHHhC---CccchhcccceEEEeCCCCEEEccccccccccccc
Confidence            99999999997633  23689999999999999999999987   89999999999999999999999999999874433


Q ss_pred             cceeecccceEEeccccc
Q 005587          669 VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       669 ~~~~~~~~~~~~apE~~~  686 (689)
                      .  .......|+|||.+.
T Consensus       157 ~--~~~~~~~~~ape~~~  172 (256)
T cd05039         157 D--SGKLPVKWTAPEALR  172 (256)
T ss_pred             c--cCCCcccccCchhhc
Confidence            2  223345699999764

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.91  E-value=1.8e-23  Score=214.20  Aligned_cols=172  Identities=23%  Similarity=0.385  Sum_probs=144.5

Q ss_pred             CCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEe-CCeEEEEEe
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAE-HGQRLLIYE  587 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~-~~~~~lV~E  587 (689)
                      +|++.+.||+|++|.||++... +++.||+|.+..........+.+.+|++++++++|+|++++++.+.. ....++|||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e   80 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMG   80 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEec
Confidence            4788899999999999999654 57899999987654444556678899999999999999999988764 446899999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+++++|.+++....  ...+++.++..++.|++.|++|||+.   +|+||||||+||+++.++.++|+|||+++.+...
T Consensus        81 ~~~~~~l~~~l~~~~--~~~l~~~~~~~~~~~l~~~l~~lH~~---~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~  155 (257)
T cd08223          81 FCEGGDLYHKLKEQK--GKLLPENQVVEWFVQIAMALQYLHEK---HILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQ  155 (257)
T ss_pred             ccCCCcHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCchhEEEecCCcEEEecccceEEeccc
Confidence            999999999997532  34589999999999999999999987   8999999999999999999999999999877543


Q ss_pred             C-cceeecccceEEeccccc
Q 005587          668 S-VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~-~~~~~~~~~~~~apE~~~  686 (689)
                      . ......++..|+|||+..
T Consensus       156 ~~~~~~~~~~~~y~aPE~~~  175 (257)
T cd08223         156 CDMASTLIGTPYYMSPELFS  175 (257)
T ss_pred             CCccccccCCcCccChhHhc
Confidence            2 222334567899999874

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.91  E-value=1e-23  Score=216.86  Aligned_cols=169  Identities=26%  Similarity=0.419  Sum_probs=142.2

Q ss_pred             cCCCccceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      ++|++.+.||+|+||.||+|...++..||+|.+.....   ..+.+.+|+.++++++|+||+++++++. .+..++||||
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~---~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~   81 (260)
T cd05070           6 ESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTM---SPESFLEEAQIMKKLRHDKLVQLYAVVS-EEPIYIVTEY   81 (260)
T ss_pred             HHhhhhheeccccCceEEEEEecCCceeEEEEecCCCC---CHHHHHHHHHHHHhcCCCceEEEEeEEC-CCCcEEEEEe
Confidence            46888899999999999999888888999999875433   2456889999999999999999999875 4568999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      +++++|.++++...  ...+++..++.++.|++.||.|||+.   +|+||||||+||++++++.++|+|||++..+....
T Consensus        82 ~~~~~L~~~~~~~~--~~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~  156 (260)
T cd05070          82 MSKGSLLDFLKDGE--GRALKLPNLVDMAAQVAAGMAYIERM---NYIHRDLRSANILVGDGLVCKIADFGLARLIEDNE  156 (260)
T ss_pred             cCCCcHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEEeCCceEEeCCceeeeeccCcc
Confidence            99999999997532  34589999999999999999999987   89999999999999999999999999998775543


Q ss_pred             ccee--ecccceEEeccccc
Q 005587          669 VSQV--SHNLTIMRAGGVTH  686 (689)
Q Consensus       669 ~~~~--~~~~~~~~apE~~~  686 (689)
                      ....  ..+...|+|||++.
T Consensus       157 ~~~~~~~~~~~~y~aPE~~~  176 (260)
T cd05070         157 YTARQGAKFPIKWTAPEAAL  176 (260)
T ss_pred             cccccCCCCCccccChHHHh
Confidence            2211  12234699999863

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.90  E-value=1e-23  Score=216.20  Aligned_cols=160  Identities=24%  Similarity=0.369  Sum_probs=133.6

Q ss_pred             ceEeecCCeEEEEEEeCCCc-----------EEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEE
Q 005587          515 NLIGAGMLGSVYRAQLPDGK-----------LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRL  583 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~~~g~-----------~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~  583 (689)
                      +.||+|+||.||+|.+.+..           .|++|.+.....   ....|.+|+.++++++||||+++++++.. +..+
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~   76 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHR---DSLAFFETASLMSQLSHKHLVKLYGVCVR-DENI   76 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchh---hHHHHHHHHHHHHcCCCcchhheeeEEec-CCcE
Confidence            46899999999999775432           577787654321   25788899999999999999999999988 7889


Q ss_pred             EEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCC-------cEEEE
Q 005587          584 LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDL-------AVSVS  656 (689)
Q Consensus       584 lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~-------~~kl~  656 (689)
                      +||||+++|+|.+++....   ..+++..++.++.|++.||.|||+.   +|+||||||+|||++.++       .+||+
T Consensus        77 lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dlkp~Nill~~~~~~~~~~~~~kl~  150 (259)
T cd05037          77 MVEEYVKFGPLDVFLHREK---NNVSLHWKLDVAKQLASALHYLEDK---KLVHGNVCGKNILVARYGLNEGYVPFIKLS  150 (259)
T ss_pred             EEEEcCCCCcHHHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHhhC---CeecccCccceEEEecCccccCCceeEEeC
Confidence            9999999999999997632   2688999999999999999999987   899999999999999887       79999


Q ss_pred             eecCCccccCCCcceeecccceEEecccccc
Q 005587          657 DCGLAPLISSGSVSQVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       657 DFGla~~~~~~~~~~~~~~~~~~~apE~~~~  687 (689)
                      |||++..+....   ...+...|+|||++..
T Consensus       151 Dfg~a~~~~~~~---~~~~~~~y~aPE~~~~  178 (259)
T cd05037         151 DPGIPITVLSRE---ERVERIPWIAPECIRN  178 (259)
T ss_pred             CCCccccccccc---ccccCCCccChhhhcC
Confidence            999999865522   2334567999998753

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.90  E-value=3.8e-24  Score=245.62  Aligned_cols=173  Identities=29%  Similarity=0.466  Sum_probs=145.6

Q ss_pred             CCCccceEeecCCeEEEEEEeCC--Cc----EEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEE
Q 005587          510 SFSQENLIGAGMLGSVYRAQLPD--GK----LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRL  583 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~~--g~----~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~  583 (689)
                      +-...+.||+|+||.||.|.+.+  |.    .||||.+.+.. +.+...+|++|..+|++++|||||+++|.|.+....+
T Consensus       693 ~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~-~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~~  771 (1025)
T KOG1095|consen  693 NVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLS-SEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPPL  771 (1025)
T ss_pred             heEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccC-CHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCCcE
Confidence            44567889999999999997643  43    48999987654 4677889999999999999999999999999999999


Q ss_pred             EEEeccCCCCHHHHHhcCcc---cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecC
Q 005587          584 LIYEYCSNGTLQDMLHSDDE---LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGL  660 (689)
Q Consensus       584 lV~Ey~~ggsL~~~l~~~~~---~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGl  660 (689)
                      |++|||+||||..+|++.+.   ....+.....+.++.|||+|+.||++.   ++|||||..+|+||++...+||+||||
T Consensus       772 i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~---~fvHRDLAaRNCLL~~~r~VKIaDFGl  848 (1025)
T KOG1095|consen  772 ILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESK---HFVHRDLAARNCLLDERRVVKIADFGL  848 (1025)
T ss_pred             EEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhC---CCcCcchhhhheeecccCcEEEcccch
Confidence            99999999999999997532   134688899999999999999999998   799999999999999999999999999


Q ss_pred             CccccCCCcceeecc-cc--eEEeccccc
Q 005587          661 APLISSGSVSQVSHN-LT--IMRAGGVTH  686 (689)
Q Consensus       661 a~~~~~~~~~~~~~~-~~--~~~apE~~~  686 (689)
                      |+.+-..+....... +.  -|||||.+.
T Consensus       849 ArDiy~~~yyr~~~~a~lPvkWm~PEsl~  877 (1025)
T KOG1095|consen  849 ARDIYDKDYYRKHGEAMLPVKWMPPESLK  877 (1025)
T ss_pred             hHhhhhchheeccCccccceecCCHHHHh
Confidence            996554443332222 32  289999985

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.90  E-value=1.2e-23  Score=218.21  Aligned_cols=174  Identities=22%  Similarity=0.292  Sum_probs=143.8

Q ss_pred             cCCCccceEeecCCeEEEEEEeC------CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP------DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQR  582 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~  582 (689)
                      ++|.+.+.||+|+||.||+|...      ++..||+|.+..... ......+.+|+.+++.++||||+++++++...+..
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~-~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~   84 (277)
T cd05032           6 EKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENAS-MRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQPT   84 (277)
T ss_pred             HHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccC-HHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCCCc
Confidence            57888899999999999999653      246899999865432 33456788999999999999999999999999999


Q ss_pred             EEEEeccCCCCHHHHHhcCccc------CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEE
Q 005587          583 LLIYEYCSNGTLQDMLHSDDEL------KNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVS  656 (689)
Q Consensus       583 ~lV~Ey~~ggsL~~~l~~~~~~------~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~  656 (689)
                      ++||||+++|+|.+++......      ...++|..++.++.|++.||.|||+.   +|+||||||+||+++.++.+||+
T Consensus        85 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~di~p~nill~~~~~~kl~  161 (277)
T cd05032          85 LVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAK---KFVHRDLAARNCMVAEDLTVKIG  161 (277)
T ss_pred             EEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccChheEEEcCCCCEEEC
Confidence            9999999999999999754321      22478999999999999999999987   89999999999999999999999


Q ss_pred             eecCCccccCCCcc---eeecccceEEeccccc
Q 005587          657 DCGLAPLISSGSVS---QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       657 DFGla~~~~~~~~~---~~~~~~~~~~apE~~~  686 (689)
                      |||+++.+......   ....++..|+|||.+.
T Consensus       162 dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  194 (277)
T cd05032         162 DFGMTRDIYETDYYRKGGKGLLPVRWMAPESLK  194 (277)
T ss_pred             CcccchhhccCcccccCCCCCccccccCHHHHh
Confidence            99999876543321   1223346799999864

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.90  E-value=1.7e-23  Score=219.27  Aligned_cols=174  Identities=25%  Similarity=0.373  Sum_probs=144.3

Q ss_pred             cCCCccceEeecCCeEEEEEEeCC-----------------CcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcce
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPD-----------------GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE  571 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~~-----------------g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~  571 (689)
                      ++|++.+.||+|+||.||+|....                 +..||+|.+..... ......+.+|++++++++||||++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~   83 (296)
T cd05051           5 QPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDAS-DNAREDFLKEVKILSRLSDPNIAR   83 (296)
T ss_pred             hhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccC-HHHHHHHHHHHHHHHhcCCCCEeE
Confidence            578889999999999999986532                 24589999875533 345678899999999999999999


Q ss_pred             ecEEEEeCCeEEEEEeccCCCCHHHHHhcCcc-------cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCC
Q 005587          572 LKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDE-------LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSAN  644 (689)
Q Consensus       572 l~~~~~~~~~~~lV~Ey~~ggsL~~~l~~~~~-------~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~N  644 (689)
                      +++++...+..++||||+.+++|.+++.....       ....+++..++.++.|++.||.|||+.   +|+||||||+|
T Consensus        84 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~---~i~H~dlkp~N  160 (296)
T cd05051          84 LLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESL---NFVHRDLATRN  160 (296)
T ss_pred             EEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHc---Cccccccchhc
Confidence            99999999999999999999999999976431       123689999999999999999999987   89999999999


Q ss_pred             eEecCCCcEEEEeecCCccccCCCcce---eecccceEEeccccc
Q 005587          645 ILLDDDLAVSVSDCGLAPLISSGSVSQ---VSHNLTIMRAGGVTH  686 (689)
Q Consensus       645 ILl~~~~~~kl~DFGla~~~~~~~~~~---~~~~~~~~~apE~~~  686 (689)
                      |++++++.++|+|||+++.+.......   ....+..|+|||++.
T Consensus       161 ili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  205 (296)
T cd05051         161 CLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVL  205 (296)
T ss_pred             eeecCCCceEEccccceeecccCcceeecCcCCCCceecCHHHhh
Confidence            999999999999999998765443221   122345799999874

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.90  E-value=2e-23  Score=213.74  Aligned_cols=172  Identities=22%  Similarity=0.342  Sum_probs=148.6

Q ss_pred             CCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          510 SFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      +|+..+.||+|+||.||+|.. .+++.+|||.+............+.+|++++++++||||+++++.+...+..++||||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEY   80 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEec
Confidence            477889999999999999965 4688999999876554445567889999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCC-CcEEEEeecCCccccCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDD-LAVSVSDCGLAPLISSG  667 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~-~~~kl~DFGla~~~~~~  667 (689)
                      +++++|.+++....  ...+++..++.++.|+++||.|||+.   +|+|+||||+||+++++ +.+||+|||+++.+...
T Consensus        81 ~~~~~L~~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lh~~---~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~  155 (256)
T cd08220          81 APGGTLAEYIQKRC--NSLLDEDTILHFFVQILLALHHVHTK---LILHRDLKTQNILLDKHKMVVKIGDFGISKILSSK  155 (256)
T ss_pred             CCCCCHHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEEccCCCceecCCC
Confidence            99999999997632  34588999999999999999999987   89999999999999854 46899999999988766


Q ss_pred             CcceeecccceEEeccccc
Q 005587          668 SVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~~~~~~~~~~~~apE~~~  686 (689)
                      .......++..|+|||++.
T Consensus       156 ~~~~~~~~~~~y~aPE~~~  174 (256)
T cd08220         156 SKAYTVVGTPCYISPELCE  174 (256)
T ss_pred             ccccccccCCcccCchhcc
Confidence            5555556677899999874

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.90  E-value=1.5e-23  Score=218.27  Aligned_cols=170  Identities=25%  Similarity=0.388  Sum_probs=137.5

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCc----EEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGK----LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRL  583 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~----~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~  583 (689)
                      ++|++.+.||+|+||.||+|.+. +++    .+++|.+.... ......++..|+..+++++||||+++++++.. ...+
T Consensus         7 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~-~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~~-~~~~   84 (279)
T cd05111           7 TELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRS-GRQTFQEITDHMLAMGSLDHAYIVRLLGICPG-ASLQ   84 (279)
T ss_pred             hhceeccccCccCCcceEEEEEcCCCCceeeEEEEeeccccc-chHHHHHHHHHHHHHhcCCCCCcceEEEEECC-CccE
Confidence            46777899999999999999764 444    47777775332 23344677888889999999999999998764 4578


Q ss_pred             EEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcc
Q 005587          584 LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPL  663 (689)
Q Consensus       584 lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~  663 (689)
                      +++||+++|+|.+++...   ...++|..+..|+.||+.||.|||+.   +++||||||+|||+++++.+||+|||+++.
T Consensus        85 ~i~e~~~~gsL~~~l~~~---~~~~~~~~~~~i~~qi~~~l~~lH~~---~iiH~dlkp~nili~~~~~~kl~Dfg~~~~  158 (279)
T cd05111          85 LVTQLSPLGSLLDHVRQH---RDSLDPQRLLNWCVQIAKGMYYLEEH---RMVHRNLAARNILLKSDSIVQIADFGVADL  158 (279)
T ss_pred             EEEEeCCCCcHHHHHHhc---ccCCCHHHHHHHHHHHHHHHHHHHHC---CEeccccCcceEEEcCCCcEEEcCCcccee
Confidence            999999999999999753   24689999999999999999999987   899999999999999999999999999987


Q ss_pred             ccCCCcce---eecccceEEeccccc
Q 005587          664 ISSGSVSQ---VSHNLTIMRAGGVTH  686 (689)
Q Consensus       664 ~~~~~~~~---~~~~~~~~~apE~~~  686 (689)
                      +.......   ...+...|++||.+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~y~~pE~~~  184 (279)
T cd05111         159 LYPDDKKYFYSEHKTPIKWMALESIL  184 (279)
T ss_pred             ccCCCcccccCCCCCcccccCHHHhc
Confidence            75443221   122345699999874

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.90  E-value=2.4e-23  Score=214.74  Aligned_cols=171  Identities=23%  Similarity=0.307  Sum_probs=141.0

Q ss_pred             cCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCC---hhhHHHHHHHHHHHhcCCCCCcceecEEEEeC--CeE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASS---QQKDDEFLELVNNIDRIRHANIVELKGYCAEH--GQR  582 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~---~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~--~~~  582 (689)
                      ++|++.+.||+|+||.||+|.. .+|+.||||.+......   ....+.+.+|++++++++||||+++++++.+.  ...
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTL   81 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceE
Confidence            4688899999999999999965 46899999988643211   22346788899999999999999999988763  568


Q ss_pred             EEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCc
Q 005587          583 LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAP  662 (689)
Q Consensus       583 ~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~  662 (689)
                      ++||||+++++|.+++...    ..+++...+.++.|++.||+|||+.   +|+|+||||+||+++.++.++|+|||+++
T Consensus        82 ~~v~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~l~Dfg~~~  154 (265)
T cd06652          82 SIFMEHMPGGSIKDQLKSY----GALTENVTRKYTRQILEGVSYLHSN---MIVHRDIKGANILRDSVGNVKLGDFGASK  154 (265)
T ss_pred             EEEEEecCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEecCCCCEEECcCcccc
Confidence            8999999999999998753    3478888999999999999999987   89999999999999999999999999998


Q ss_pred             cccCCCc----ceeecccceEEeccccc
Q 005587          663 LISSGSV----SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       663 ~~~~~~~----~~~~~~~~~~~apE~~~  686 (689)
                      .+.....    .....++..|+|||++.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~  182 (265)
T cd06652         155 RLQTICLSGTGMKSVTGTPYWMSPEVIS  182 (265)
T ss_pred             ccccccccccccccCCCCccccChhhhc
Confidence            7643211    11234566899999874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.90  E-value=1.2e-23  Score=219.06  Aligned_cols=173  Identities=24%  Similarity=0.347  Sum_probs=141.9

Q ss_pred             CCCccceEeecCCeEEEEEEeC------CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEE
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP------DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRL  583 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~  583 (689)
                      .|++.+.||+|+||.||+|...      +++.||||++..... ....+.+.+|+.++.+++||||+++++++...+..+
T Consensus         6 ~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~   84 (283)
T cd05091           6 TVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAE-GPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLS   84 (283)
T ss_pred             HHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCC-HHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCceE
Confidence            4667788999999999999753      257899999875432 233567889999999999999999999999999999


Q ss_pred             EEEeccCCCCHHHHHhcCc------------ccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCC
Q 005587          584 LIYEYCSNGTLQDMLHSDD------------ELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDL  651 (689)
Q Consensus       584 lV~Ey~~ggsL~~~l~~~~------------~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~  651 (689)
                      +++||+.+++|.+++....            .....+++..+..++.|+++||.|||+.   +|+||||||+||++++++
T Consensus        85 ~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~---gi~H~dlkp~Nil~~~~~  161 (283)
T cd05091          85 MIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSH---HVVHKDLATRNVLVFDKL  161 (283)
T ss_pred             EEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHc---CccccccchhheEecCCC
Confidence            9999999999999985321            1123588899999999999999999987   899999999999999999


Q ss_pred             cEEEEeecCCccccCCCcce---eecccceEEeccccc
Q 005587          652 AVSVSDCGLAPLISSGSVSQ---VSHNLTIMRAGGVTH  686 (689)
Q Consensus       652 ~~kl~DFGla~~~~~~~~~~---~~~~~~~~~apE~~~  686 (689)
                      .+||+|||+++.+.......   ....+..|+|||.+.
T Consensus       162 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  199 (283)
T cd05091         162 NVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIM  199 (283)
T ss_pred             ceEecccccccccccchheeeccCccCCccccCHHHHh
Confidence            99999999998765443221   122345799999874

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.90  E-value=1.9e-23  Score=218.53  Aligned_cols=173  Identities=25%  Similarity=0.389  Sum_probs=140.9

Q ss_pred             CCCccceEeecCCeEEEEEEeC------CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEE
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP------DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRL  583 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~  583 (689)
                      +|++.+.||+|+||.||+|...      ....+|+|.+..... ......+.+|+.+++.++||||+++++++...+..+
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   79 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENAS-SSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLL   79 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCC-HHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCcE
Confidence            4677889999999999999642      235788888865432 344567889999999999999999999999999999


Q ss_pred             EEEeccCCCCHHHHHhcCcc--------------------cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCC
Q 005587          584 LIYEYCSNGTLQDMLHSDDE--------------------LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSA  643 (689)
Q Consensus       584 lV~Ey~~ggsL~~~l~~~~~--------------------~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~  643 (689)
                      +||||+.+|+|.+++.....                    ....+++..++.++.|++.||+|||+.   +|+||||||+
T Consensus        80 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~---~ivH~dikp~  156 (290)
T cd05045          80 LIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEM---KLVHRDLAAR  156 (290)
T ss_pred             EEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHC---Ceehhhhhhh
Confidence            99999999999999865321                    123588999999999999999999987   8999999999


Q ss_pred             CeEecCCCcEEEEeecCCccccCCCcc---eeecccceEEeccccc
Q 005587          644 NILLDDDLAVSVSDCGLAPLISSGSVS---QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       644 NILl~~~~~~kl~DFGla~~~~~~~~~---~~~~~~~~~~apE~~~  686 (689)
                      |||+++++.+||+|||+++.+......   .....+..|+|||.+.
T Consensus       157 nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~  202 (290)
T cd05045         157 NVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLF  202 (290)
T ss_pred             eEEEcCCCcEEeccccccccccCccchhcccCCCCCccccCHHHHc
Confidence            999999999999999999876433211   1122345799999763

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.90  E-value=1.3e-23  Score=231.91  Aligned_cols=179  Identities=24%  Similarity=0.397  Sum_probs=153.1

Q ss_pred             chhhHhhhccCCCccceEeecCCeEEEEEE-eCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcC-CCCCcceecEEEE
Q 005587          500 TIASLQQYTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHANIVELKGYCA  577 (689)
Q Consensus       500 ~~~~l~~~~~~f~~~~~iG~G~~G~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~  577 (689)
                      .++.+...++-|++.+.||+|.+|.||+++ .++++.+|||++....   ..++++..|.++++.. .|||++.++|+|.
T Consensus        10 ~~~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~---d~deEiE~eynil~~~~~hpnv~~fyg~~~   86 (953)
T KOG0587|consen   10 DLSSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTE---DEEEEIELEYNMLKKYSHHPNVATFYGAFI   86 (953)
T ss_pred             chhhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCc---cccHHHHHHHHHHHhccCCCCcceEEEEEE
Confidence            445555667789999999999999999995 5679999999986543   3456777888888776 6999999999997


Q ss_pred             e-----CCeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCc
Q 005587          578 E-----HGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLA  652 (689)
Q Consensus       578 ~-----~~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~  652 (689)
                      .     .+++|||||||.|||.-|+++...  ...+.|..+..|.+.+++|+.+||..   .+||||||-.|||++.++.
T Consensus        87 k~~~~~~DqLWLVMEfC~gGSVTDLVKn~~--g~rl~E~~IaYI~re~lrgl~HLH~n---kviHRDikG~NiLLT~e~~  161 (953)
T KOG0587|consen   87 KKDPGNGDQLWLVMEFCGGGSVTDLVKNTK--GNRLKEEWIAYILREILRGLAHLHNN---KVIHRDIKGQNVLLTENAE  161 (953)
T ss_pred             EecCCCCCeEEEEeeccCCccHHHHHhhhc--ccchhhHHHHHHHHHHHHHHHHHhhc---ceeeecccCceEEEeccCc
Confidence            4     578999999999999999998755  56799999999999999999999987   7999999999999999999


Q ss_pred             EEEEeecCCccccCCC-cceeecccceEEeccccc
Q 005587          653 VSVSDCGLAPLISSGS-VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       653 ~kl~DFGla~~~~~~~-~~~~~~~~~~~~apE~~~  686 (689)
                      +|++|||++..+...- ......++++|||||++-
T Consensus       162 VKLvDFGvSaQldsT~grRnT~iGtP~WMAPEVia  196 (953)
T KOG0587|consen  162 VKLVDFGVSAQLDSTVGRRNTFIGTPYWMAPEVIA  196 (953)
T ss_pred             EEEeeeeeeeeeecccccccCcCCCcccccceeee
Confidence            9999999999887643 334467889999999983

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.90  E-value=1.6e-23  Score=219.83  Aligned_cols=173  Identities=24%  Similarity=0.401  Sum_probs=141.9

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-----------------CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcce
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-----------------DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE  571 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-----------------~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~  571 (689)
                      ++|++.+.||+|+||.||+++..                 +...||+|.+.... .......|.+|++++++++|+||++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~-~~~~~~~~~~E~~~l~~l~~~~i~~   83 (296)
T cd05095           5 KRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDA-NKNARNDFLKEIKIMSRLKDPNIIR   83 (296)
T ss_pred             hhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccC-CHHHHHHHHHHHHHHHhCCCCCcce
Confidence            56888999999999999998532                 23468999986543 2344568899999999999999999


Q ss_pred             ecEEEEeCCeEEEEEeccCCCCHHHHHhcCccc-------CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCC
Q 005587          572 LKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDEL-------KNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSAN  644 (689)
Q Consensus       572 l~~~~~~~~~~~lV~Ey~~ggsL~~~l~~~~~~-------~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~N  644 (689)
                      +++++...+..++||||+.+|+|.+++......       ...+++.++..++.|++.||+|||+.   +|+||||||+|
T Consensus        84 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~---~i~H~dlkp~N  160 (296)
T cd05095          84 LLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSL---NFVHRDLATRN  160 (296)
T ss_pred             EEEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHC---CeecccCChhe
Confidence            999999999999999999999999998764311       13478889999999999999999987   89999999999


Q ss_pred             eEecCCCcEEEEeecCCccccCCCccee---ecccceEEecccc
Q 005587          645 ILLDDDLAVSVSDCGLAPLISSGSVSQV---SHNLTIMRAGGVT  685 (689)
Q Consensus       645 ILl~~~~~~kl~DFGla~~~~~~~~~~~---~~~~~~~~apE~~  685 (689)
                      ||++.++.++|+|||+++.+........   ......|++||+.
T Consensus       161 ili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~  204 (296)
T cd05095         161 CLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESI  204 (296)
T ss_pred             EEEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHHH
Confidence            9999999999999999987654432211   1223568999965

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.90  E-value=2.3e-23  Score=214.14  Aligned_cols=162  Identities=20%  Similarity=0.344  Sum_probs=133.8

Q ss_pred             EeecCCeEEEEEEeC---CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccCCCC
Q 005587          517 IGAGMLGSVYRAQLP---DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGT  593 (689)
Q Consensus       517 iG~G~~G~Vy~~~~~---~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~ggs  593 (689)
                      ||+|+||.||+|.+.   ++..||+|.+.... .....+.+.+|+.++++++||||+++++++.. +..++||||+++|+
T Consensus         3 ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~-~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~-~~~~lv~e~~~~~~   80 (257)
T cd05115           3 LGSGNFGCVKKGVYKMRKKQIDVAIKVLKNEN-EKSVRDEMMREAEIMHQLDNPYIVRMIGVCEA-EALMLVMEMASGGP   80 (257)
T ss_pred             cCCCCcccEEEEEEecCCCceeEEEEEccccc-ChHHHHHHHHHHHHHHhcCCCCeEEEEEEEcC-CCeEEEEEeCCCCC
Confidence            899999999999653   35679999986543 23445678999999999999999999998864 57899999999999


Q ss_pred             HHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCcceee
Q 005587          594 LQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVS  673 (689)
Q Consensus       594 L~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~  673 (689)
                      |.+++...   ...+++..+++++.|+++||.|||+.   +++||||||+|||++.++.+||+|||+++.+.........
T Consensus        81 L~~~l~~~---~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~  154 (257)
T cd05115          81 LNKFLSGK---KDEITVSNVVELMHQVSMGMKYLEGK---NFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKA  154 (257)
T ss_pred             HHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHHHhc---CeeecccchheEEEcCCCcEEeccCCccccccCCccceec
Confidence            99998743   34689999999999999999999987   8999999999999999999999999999876544322111


Q ss_pred             ----cccceEEeccccc
Q 005587          674 ----HNLTIMRAGGVTH  686 (689)
Q Consensus       674 ----~~~~~~~apE~~~  686 (689)
                          ..+..|+|||++.
T Consensus       155 ~~~~~~~~~y~aPE~~~  171 (257)
T cd05115         155 RSAGKWPLKWYAPECIN  171 (257)
T ss_pred             cCCCCCCcccCCHHHHc
Confidence                1135699999864

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.90  E-value=2.2e-23  Score=218.30  Aligned_cols=173  Identities=22%  Similarity=0.368  Sum_probs=143.1

Q ss_pred             cCCCccceEeecCCeEEEEEEeC------CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP------DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQR  582 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~  582 (689)
                      .+|.+.+.||+|+||.||+|+..      ++..+++|.+....  ......+.+|++.+++++|+||+++++++...+..
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   82 (291)
T cd05094           5 RDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPT--LAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPL   82 (291)
T ss_pred             HHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCcc--HHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCce
Confidence            35777889999999999999642      35568999875432  33456788999999999999999999999999999


Q ss_pred             EEEEeccCCCCHHHHHhcCcc------------cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCC
Q 005587          583 LLIYEYCSNGTLQDMLHSDDE------------LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDD  650 (689)
Q Consensus       583 ~lV~Ey~~ggsL~~~l~~~~~------------~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~  650 (689)
                      ++||||+++++|.+++.....            ....++|..++.++.|++.||+|||+.   +|+||||||+|||++.+
T Consensus        83 ~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~i~H~dlkp~Nil~~~~  159 (291)
T cd05094          83 IMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQ---HFVHRDLATRNCLVGAN  159 (291)
T ss_pred             EEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccCcceEEEccC
Confidence            999999999999999975321            123589999999999999999999987   89999999999999999


Q ss_pred             CcEEEEeecCCccccCCCc---ceeecccceEEeccccc
Q 005587          651 LAVSVSDCGLAPLISSGSV---SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       651 ~~~kl~DFGla~~~~~~~~---~~~~~~~~~~~apE~~~  686 (689)
                      +.+||+|||+++.......   .....++..|+|||++.
T Consensus       160 ~~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~  198 (291)
T cd05094         160 LLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIM  198 (291)
T ss_pred             CcEEECCCCcccccCCCceeecCCCCCcceeecChHHhc
Confidence            9999999999987654332   12233456799999874

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.90  E-value=2e-23  Score=217.10  Aligned_cols=170  Identities=22%  Similarity=0.404  Sum_probs=140.3

Q ss_pred             cCCCccceEeecCCeEEEEEEe-CCCc----EEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGK----LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRL  583 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~-~~g~----~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~  583 (689)
                      ++|+..+.||+|+||.||+|.+ .+|+    .||+|.+.... .......+.+|+.+++.+.||||+++++++.. ...+
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~-~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~~~   84 (279)
T cd05109           7 TELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENT-SPKANKEILDEAYVMAGVGSPYVCRLLGICLT-STVQ   84 (279)
T ss_pred             hheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCC-CHHHHHHHHHHHHHHHhcCCCCCceEEEEEcC-CCcE
Confidence            4678889999999999999974 3454    48999986543 23446678899999999999999999999875 4578


Q ss_pred             EEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcc
Q 005587          584 LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPL  663 (689)
Q Consensus       584 lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~  663 (689)
                      ++|||+++|+|.++++..   ...+++..++.++.|+++||+|||+.   +|+||||||+|||+++++.+||+|||+++.
T Consensus        85 l~~~~~~~g~l~~~l~~~---~~~~~~~~~~~~~~qi~~~L~~lH~~---~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~  158 (279)
T cd05109          85 LVTQLMPYGCLLDYVREN---KDRIGSQDLLNWCVQIAKGMSYLEEV---RLVHRDLAARNVLVKSPNHVKITDFGLARL  158 (279)
T ss_pred             EEEEcCCCCCHHHHHhhc---cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccccceEEEcCCCcEEECCCCceee
Confidence            999999999999999753   23589999999999999999999987   899999999999999999999999999998


Q ss_pred             ccCCCcceee---cccceEEeccccc
Q 005587          664 ISSGSVSQVS---HNLTIMRAGGVTH  686 (689)
Q Consensus       664 ~~~~~~~~~~---~~~~~~~apE~~~  686 (689)
                      +.........   .....|++||.+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~y~~PE~~~  184 (279)
T cd05109         159 LDIDETEYHADGGKVPIKWMALESIL  184 (279)
T ss_pred             cccccceeecCCCccchhhCCHHHhc
Confidence            7644332222   1235699999874

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.90  E-value=2e-23  Score=221.20  Aligned_cols=174  Identities=25%  Similarity=0.406  Sum_probs=142.1

Q ss_pred             cCCCccceEeecCCeEEEEEEeC--------CCcEEEEEEeccccCChhhHHHHHHHHHHHhcC-CCCCcceecEEEEeC
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP--------DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHANIVELKGYCAEH  579 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~--------~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~~  579 (689)
                      ++|.+.+.||+|+||.||+|+..        ....+|+|.+..... ......+..|+++++++ +||||+++++++...
T Consensus        12 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~   90 (314)
T cd05099          12 DRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNAT-DKDLADLISEMELMKLIGKHKNIINLLGVCTQE   90 (314)
T ss_pred             HHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCC-hHHHHHHHHHHHHHHhccCCCCeeeEEEEEccC
Confidence            46778899999999999999642        245799998865432 34456788999999999 699999999999999


Q ss_pred             CeEEEEEeccCCCCHHHHHhcCcc------------cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEe
Q 005587          580 GQRLLIYEYCSNGTLQDMLHSDDE------------LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILL  647 (689)
Q Consensus       580 ~~~~lV~Ey~~ggsL~~~l~~~~~------------~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl  647 (689)
                      +..++||||+++|+|.+++.....            ....++|..+++++.|++.||.|||+.   +|+||||||+|||+
T Consensus        91 ~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~---gi~H~dlkp~Nill  167 (314)
T cd05099          91 GPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESR---RCIHRDLAARNVLV  167 (314)
T ss_pred             CceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHC---CeeeccccceeEEE
Confidence            999999999999999999976321            124589999999999999999999987   89999999999999


Q ss_pred             cCCCcEEEEeecCCccccCCCcce---eecccceEEeccccc
Q 005587          648 DDDLAVSVSDCGLAPLISSGSVSQ---VSHNLTIMRAGGVTH  686 (689)
Q Consensus       648 ~~~~~~kl~DFGla~~~~~~~~~~---~~~~~~~~~apE~~~  686 (689)
                      ++++.+||+|||+++.+.......   .......|+|||++.
T Consensus       168 ~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  209 (314)
T cd05099         168 TEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALF  209 (314)
T ss_pred             cCCCcEEEccccccccccccccccccccCCCCccccCHHHHc
Confidence            999999999999998775432211   112234699999874

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.90  E-value=2.5e-23  Score=215.39  Aligned_cols=168  Identities=25%  Similarity=0.418  Sum_probs=135.1

Q ss_pred             ceEeecCCeEEEEEEeCC-Cc--EEEEEEeccccCChhhHHHHHHHHHHHhcC-CCCCcceecEEEEeCCeEEEEEeccC
Q 005587          515 NLIGAGMLGSVYRAQLPD-GK--LLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHANIVELKGYCAEHGQRLLIYEYCS  590 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~~~-g~--~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~~~~~~lV~Ey~~  590 (689)
                      +.||+|+||.||+|...+ +.  .+|+|.+.... .......+.+|++++.++ +||||+++++++...+..++||||++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~-~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~   79 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYA-SKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAP   79 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccC-CHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCC
Confidence            368999999999997653 43  46888876432 234456788999999999 89999999999999999999999999


Q ss_pred             CCCHHHHHhcCcc------------cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEee
Q 005587          591 NGTLQDMLHSDDE------------LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDC  658 (689)
Q Consensus       591 ggsL~~~l~~~~~------------~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DF  658 (689)
                      +|+|.++++....            ....+++..++.++.|++.||+|||+.   +++||||||+|||+++++.+||+||
T Consensus        80 ~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~---~i~H~dikp~nili~~~~~~kl~df  156 (270)
T cd05047          80 HGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYVAKIADF  156 (270)
T ss_pred             CCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccccceEEEcCCCeEEECCC
Confidence            9999999975431            123578999999999999999999987   8999999999999999999999999


Q ss_pred             cCCccccCCCcceeecccceEEeccccc
Q 005587          659 GLAPLISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       659 Gla~~~~~~~~~~~~~~~~~~~apE~~~  686 (689)
                      |++..............+..|+|||++.
T Consensus       157 gl~~~~~~~~~~~~~~~~~~y~apE~~~  184 (270)
T cd05047         157 GLSRGQEVYVKKTMGRLPVRWMAIESLN  184 (270)
T ss_pred             CCccccchhhhccCCCCccccCChHHHc
Confidence            9987433222121122234599999874

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.90  E-value=1.2e-23  Score=219.34  Aligned_cols=171  Identities=21%  Similarity=0.348  Sum_probs=145.3

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      ++|+..+.||+|+||.||+|... +++.||+|++..........+.+.+|+++++.++||||+++++++...+..++|||
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (286)
T cd07846           1 EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFE   80 (286)
T ss_pred             CceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEe
Confidence            36788899999999999999775 58999999986654433345678899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+++++|.++...    ...+++..++.++.|+++||.|||+.   +|+|+||+|+||++++++.++|+|||++..+...
T Consensus        81 ~~~~~~l~~~~~~----~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~  153 (286)
T cd07846          81 FVDHTVLDDLEKY----PNGLDESRVRKYLFQILRGIEFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLAAP  153 (286)
T ss_pred             cCCccHHHHHHhc----cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEECCCCcEEEEeeeeeeeccCC
Confidence            9999999887754    23589999999999999999999987   8999999999999999999999999999876543


Q ss_pred             Ccc-eeecccceEEeccccc
Q 005587          668 SVS-QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~~-~~~~~~~~~~apE~~~  686 (689)
                      ... ....++..|+|||++.
T Consensus       154 ~~~~~~~~~~~~y~aPE~~~  173 (286)
T cd07846         154 GEVYTDYVATRWYRAPELLV  173 (286)
T ss_pred             ccccCcccceeeccCcHHhc
Confidence            322 2234567799999863

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.90  E-value=2.1e-23  Score=219.09  Aligned_cols=168  Identities=23%  Similarity=0.350  Sum_probs=144.6

Q ss_pred             cCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      .+|+..+.||+|+||.||+|.. .+++.||+|.+.....  .....+.+|+.+++.++|+||+++++++...+..++|||
T Consensus        20 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~--~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~e   97 (296)
T cd06654          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQ--PKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVME   97 (296)
T ss_pred             cceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCc--chHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEeec
Confidence            4788889999999999999965 5689999999875443  234678899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+++++|.+++..     ..+++.++..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||++......
T Consensus        98 ~~~~~~L~~~~~~-----~~~~~~~~~~i~~ql~~aL~~LH~~---gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~  169 (296)
T cd06654          98 YLAGGSLTDVVTE-----TCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE  169 (296)
T ss_pred             ccCCCCHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCEEECccccchhcccc
Confidence            9999999999864     3478899999999999999999987   8999999999999999999999999999876543


Q ss_pred             Cc-ceeecccceEEeccccc
Q 005587          668 SV-SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~-~~~~~~~~~~~apE~~~  686 (689)
                      .. .....++..|+|||.+.
T Consensus       170 ~~~~~~~~~~~~y~aPE~~~  189 (296)
T cd06654         170 QSKRSTMVGTPYWMAPEVVT  189 (296)
T ss_pred             ccccCcccCCccccCHHHHc
Confidence            32 22245677899999874

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.90  E-value=3.4e-23  Score=216.86  Aligned_cols=170  Identities=22%  Similarity=0.361  Sum_probs=144.9

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      +.|++.+.||+|+||.||+|+.. +++.||+|.+...  .....+.+.+|+.+++.++||||+++++++...+..++|||
T Consensus        12 ~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   89 (292)
T cd06644          12 EVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETK--SEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMIE   89 (292)
T ss_pred             hhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccC--CHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEEe
Confidence            56888999999999999999765 5899999998653  23456778899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+++++|..++...   ...+++..+..++.|+++||.|||+.   +|+||||||+||+++.++.+||+|||++......
T Consensus        90 ~~~~~~l~~~~~~~---~~~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~  163 (292)
T cd06644          90 FCPGGAVDAIMLEL---DRGLTEPQIQVICRQMLEALQYLHSM---KIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKT  163 (292)
T ss_pred             cCCCCcHHHHHHhh---cCCCCHHHHHHHHHHHHHHHHHHhcC---CeeecCCCcceEEEcCCCCEEEccCccceecccc
Confidence            99999999887643   23589999999999999999999987   8999999999999999999999999998765432


Q ss_pred             C-cceeecccceEEeccccc
Q 005587          668 S-VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~-~~~~~~~~~~~~apE~~~  686 (689)
                      . ......++..|+|||++.
T Consensus       164 ~~~~~~~~~~~~y~aPE~~~  183 (292)
T cd06644         164 LQRRDSFIGTPYWMAPEVVM  183 (292)
T ss_pred             ccccceecCCccccCceeec
Confidence            2 122344667899999873

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.90  E-value=1.8e-23  Score=220.11  Aligned_cols=170  Identities=21%  Similarity=0.327  Sum_probs=142.2

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      +.|.+.+.||+|+||.||+|+.. +++.||+|.+..... ......+.+|+.++++++||||+++++++...+..++|||
T Consensus         6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv~e   84 (301)
T cd07873           6 ETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHE-EGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFE   84 (301)
T ss_pred             cceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccc-cCchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEEEe
Confidence            46888899999999999999764 688999999865432 2234467789999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+. ++|.+++...   ...+++..+..++.|+++||+|||+.   +|+|+||||+||++++++.+||+|||+++.....
T Consensus        85 ~~~-~~l~~~l~~~---~~~~~~~~~~~~~~qi~~aL~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~  157 (301)
T cd07873          85 YLD-KDLKQYLDDC---GNSINMHNVKLFLFQLLRGLNYCHRR---KVLHRDLKPQNLLINERGELKLADFGLARAKSIP  157 (301)
T ss_pred             ccc-cCHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHHHEEECCCCcEEECcCcchhccCCC
Confidence            997 5999888653   24578999999999999999999987   8999999999999999999999999999875433


Q ss_pred             Cc-ceeecccceEEeccccc
Q 005587          668 SV-SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~-~~~~~~~~~~~apE~~~  686 (689)
                      .. ......+..|+|||++.
T Consensus       158 ~~~~~~~~~~~~y~~PE~~~  177 (301)
T cd07873         158 TKTYSNEVVTLWYRPPDILL  177 (301)
T ss_pred             CCcccccceeecccCcHHHh
Confidence            22 12234567899999863

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.90  E-value=2.5e-23  Score=215.09  Aligned_cols=170  Identities=27%  Similarity=0.462  Sum_probs=141.5

Q ss_pred             CCCccceEeecCCeEEEEEEeCC-C---cEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEE
Q 005587          510 SFSQENLIGAGMLGSVYRAQLPD-G---KLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLI  585 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~~-g---~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV  585 (689)
                      .|++.+.||+|+||.||+|.... +   ..||||.+.... ......+|..|+.++++++||||+++++++...+..++|
T Consensus         5 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv   83 (269)
T cd05065           5 CVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGY-TEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVMII   83 (269)
T ss_pred             HeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCC-CHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceEEE
Confidence            46778999999999999997643 3   369999986543 244567899999999999999999999999999999999


Q ss_pred             EeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcccc
Q 005587          586 YEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS  665 (689)
Q Consensus       586 ~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~  665 (689)
                      |||+++|+|.+++...   ...+++..++.++.|++.||.|||+.   +++|+||||+||+++.++.+||+|||+++.+.
T Consensus        84 ~e~~~~~~L~~~l~~~---~~~~~~~~~~~i~~~l~~al~~lH~~---g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~  157 (269)
T cd05065          84 TEFMENGALDSFLRQN---DGQFTVIQLVGMLRGIAAGMKYLSEM---NYVHRDLAARNILVNSNLVCKVSDFGLSRFLE  157 (269)
T ss_pred             EecCCCCcHHHHHhhC---CCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccChheEEEcCCCcEEECCCccccccc
Confidence            9999999999998753   23588999999999999999999987   89999999999999999999999999998775


Q ss_pred             CCCccee---ecc---cceEEeccccc
Q 005587          666 SGSVSQV---SHN---LTIMRAGGVTH  686 (689)
Q Consensus       666 ~~~~~~~---~~~---~~~~~apE~~~  686 (689)
                      .......   ..+   ...|+|||.+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~y~~PE~~~  184 (269)
T cd05065         158 DDTSDPTYTSSLGGKIPIRWTAPEAIA  184 (269)
T ss_pred             cCccccccccccCCCcceeecCHhHhc
Confidence            4332111   111   23599999874

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.90  E-value=2.6e-23  Score=213.03  Aligned_cols=168  Identities=29%  Similarity=0.471  Sum_probs=142.7

Q ss_pred             ceEeecCCeEEEEEEeCC----CcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccC
Q 005587          515 NLIGAGMLGSVYRAQLPD----GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCS  590 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~~~----g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~  590 (689)
                      +.||+|+||.||+|....    +..||+|.+....... ..+.+.+|++.+..++|+||+++++++...+..++||||++
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~-~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   79 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEE-ERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYME   79 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchh-HHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEecc
Confidence            468999999999997653    7899999987654322 46788999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcCccc-----CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcccc
Q 005587          591 NGTLQDMLHSDDEL-----KNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS  665 (689)
Q Consensus       591 ggsL~~~l~~~~~~-----~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~  665 (689)
                      +++|.+++......     ...+++..+..++.|+++||+|||+.   +|+||||||+||++++++.+||+|||.+..+.
T Consensus        80 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~di~p~nili~~~~~~~l~dfg~~~~~~  156 (262)
T cd00192          80 GGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASK---KFVHRDLAARNCLVGEDLVVKISDFGLSRDVY  156 (262)
T ss_pred             CCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcC---CcccCccCcceEEECCCCcEEEcccccccccc
Confidence            99999999864211     25689999999999999999999987   89999999999999999999999999999876


Q ss_pred             CCC---cceeecccceEEeccccc
Q 005587          666 SGS---VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       666 ~~~---~~~~~~~~~~~~apE~~~  686 (689)
                      ...   .......+..|+|||.+.
T Consensus       157 ~~~~~~~~~~~~~~~~y~aPE~~~  180 (262)
T cd00192         157 DDDYYRKKTGGKLPIRWMAPESLK  180 (262)
T ss_pred             cccccccccCCCcCccccCHHHhc
Confidence            543   122233456799999874

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.90  E-value=2e-23  Score=214.76  Aligned_cols=169  Identities=24%  Similarity=0.400  Sum_probs=140.7

Q ss_pred             cCCCccceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      ++|.+.+.||+|+||.||+|....+..+|+|.+....   ...+.+.+|++++++++|+|++++++++. .+..++||||
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~---~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~   81 (260)
T cd05069           6 ESLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGT---MMPEAFLQEAQIMKKLRHDKLVPLYAVVS-EEPIYIVTEF   81 (260)
T ss_pred             HHeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCC---ccHHHHHHHHHHHHhCCCCCeeeEEEEEc-CCCcEEEEEc
Confidence            4578889999999999999988777789999876433   23456889999999999999999998875 4568999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      +.+|+|.++++...  ...+++..+..++.|++.||.|||+.   +|+|+||||+||++++++.++|+|||+++.+....
T Consensus        82 ~~~~~L~~~~~~~~--~~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~  156 (260)
T cd05069          82 MGKGSLLDFLKEGD--GKYLKLPQLVDMAAQIADGMAYIERM---NYIHRDLRAANILVGDNLVCKIADFGLARLIEDNE  156 (260)
T ss_pred             CCCCCHHHHHhhCC--CCCCCHHHHHHHHHHHHHHHHHHHhC---CEeecccCcceEEEcCCCeEEECCCccceEccCCc
Confidence            99999999997532  34578999999999999999999987   89999999999999999999999999998775543


Q ss_pred             cce--eecccceEEeccccc
Q 005587          669 VSQ--VSHNLTIMRAGGVTH  686 (689)
Q Consensus       669 ~~~--~~~~~~~~~apE~~~  686 (689)
                      ...  ....+..|+|||...
T Consensus       157 ~~~~~~~~~~~~y~~Pe~~~  176 (260)
T cd05069         157 YTARQGAKFPIKWTAPEAAL  176 (260)
T ss_pred             ccccCCCccchhhCCHHHhc
Confidence            221  122345699999763

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.90  E-value=2.3e-23  Score=218.97  Aligned_cols=168  Identities=23%  Similarity=0.348  Sum_probs=145.3

Q ss_pred             cCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      .+|.+.+.||+|+||.||+|.. .+++.||+|.+.....  ...+.+.+|+.+++.++|+||+++++++...+..++|||
T Consensus        19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e   96 (297)
T cd06656          19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQ--PKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVME   96 (297)
T ss_pred             hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCcc--chHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEeec
Confidence            5788899999999999999975 5799999999865432  334668899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+++++|.+++..     ..+++.++..++.|++.||.|||+.   +|+||||||+|||++.++.++|+|||++......
T Consensus        97 ~~~~~~L~~~~~~-----~~~~~~~~~~~~~~l~~~L~~LH~~---~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~  168 (297)
T cd06656          97 YLAGGSLTDVVTE-----TCMDEGQIAAVCRECLQALDFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE  168 (297)
T ss_pred             ccCCCCHHHHHHh-----CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEECcCccceEccCC
Confidence            9999999999864     3578899999999999999999987   8999999999999999999999999999876544


Q ss_pred             Ccc-eeecccceEEeccccc
Q 005587          668 SVS-QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~~-~~~~~~~~~~apE~~~  686 (689)
                      ... ....++..|+|||.+.
T Consensus       169 ~~~~~~~~~~~~y~aPE~~~  188 (297)
T cd06656         169 QSKRSTMVGTPYWMAPEVVT  188 (297)
T ss_pred             ccCcCcccCCccccCHHHHc
Confidence            322 2245677899999874

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.90  E-value=1.8e-23  Score=218.02  Aligned_cols=171  Identities=23%  Similarity=0.363  Sum_probs=145.5

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      ++|++.+.||+|+||.||+|... +++.||||.+............+.+|++++++++|+||+++++++...+..++|||
T Consensus         1 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e   80 (288)
T cd07833           1 NKYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFE   80 (288)
T ss_pred             CceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEe
Confidence            36888999999999999999765 58899999987654434445778999999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |++++.+..+...    ...+++..+..++.||+.||.|||+.   +|+|+||||+||++++++.+||+|||++..+...
T Consensus        81 ~~~~~~l~~~~~~----~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~  153 (288)
T cd07833          81 YVERTLLELLEAS----PGGLPPDAVRSYIWQLLQAIAYCHSH---NIIHRDIKPENILVSESGVLKLCDFGFARALRAR  153 (288)
T ss_pred             cCCCCHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCCEEEEeeecccccCCC
Confidence            9998777666543    24588999999999999999999987   8999999999999999999999999999987665


Q ss_pred             Cc--ceeecccceEEeccccc
Q 005587          668 SV--SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~--~~~~~~~~~~~apE~~~  686 (689)
                      ..  .....++..|+|||++.
T Consensus       154 ~~~~~~~~~~~~~~~~PE~~~  174 (288)
T cd07833         154 PASPLTDYVATRWYRAPELLV  174 (288)
T ss_pred             ccccccCcccccCCcCCchhc
Confidence            42  22344567799999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.90  E-value=3.6e-23  Score=215.46  Aligned_cols=168  Identities=23%  Similarity=0.352  Sum_probs=142.6

Q ss_pred             CCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEecc
Q 005587          511 FSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYC  589 (689)
Q Consensus       511 f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~  589 (689)
                      |++.+.||+|+||.||+|... ++..+++|.+....  ......+.+|+++++.++||||+++++++...+..++||||+
T Consensus         7 ~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~--~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~   84 (282)
T cd06643           7 WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKS--EEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFC   84 (282)
T ss_pred             HHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCC--HHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEec
Confidence            567788999999999999765 57888999885432  344567889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC-
Q 005587          590 SNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS-  668 (689)
Q Consensus       590 ~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~-  668 (689)
                      ++|+|..++...   ...+++..+..++.|+++||.|||+.   +|+||||||+||+++.++.+||+|||++....... 
T Consensus        85 ~~~~l~~~~~~~---~~~l~~~~~~~~~~qi~~~L~~LH~~---~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~  158 (282)
T cd06643          85 AGGAVDAVMLEL---ERPLTEPQIRVVCKQTLEALNYLHEN---KIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQ  158 (282)
T ss_pred             CCCcHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEccCCCEEEcccccccccccccc
Confidence            999999887642   24689999999999999999999987   89999999999999999999999999998764332 


Q ss_pred             cceeecccceEEeccccc
Q 005587          669 VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       669 ~~~~~~~~~~~~apE~~~  686 (689)
                      ......++..|+|||++.
T Consensus       159 ~~~~~~~~~~y~aPE~~~  176 (282)
T cd06643         159 RRDSFIGTPYWMAPEVVM  176 (282)
T ss_pred             ccccccccccccCHhhcc
Confidence            122234677899999873

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.90  E-value=1.7e-23  Score=217.35  Aligned_cols=174  Identities=24%  Similarity=0.315  Sum_probs=142.3

Q ss_pred             ccCCCccceEeecCCeEEEEEEeC------CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCe
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQLP------DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQ  581 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~  581 (689)
                      .++|.+.+.||+|+||.||+|.+.      .+..||+|.+.... .......|.+|+.++++++|+||+++++++.+.+.
T Consensus         5 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   83 (277)
T cd05036           5 RDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESC-SEQDESDFLMEALIMSKFNHQNIVRLIGVSFERLP   83 (277)
T ss_pred             HHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCC-CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCC
Confidence            467888999999999999999764      35689999876443 23445678999999999999999999999999999


Q ss_pred             EEEEEeccCCCCHHHHHhcCccc---CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCC---cEEE
Q 005587          582 RLLIYEYCSNGTLQDMLHSDDEL---KNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDL---AVSV  655 (689)
Q Consensus       582 ~~lV~Ey~~ggsL~~~l~~~~~~---~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~---~~kl  655 (689)
                      .++||||+++|+|.++++.....   ...++|..+++++.||+.||+|||+.   +++||||||+||+++.++   .+||
T Consensus        84 ~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~nil~~~~~~~~~~kl  160 (277)
T cd05036          84 RFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEEN---HFIHRDIAARNCLLTCKGPGRVAKI  160 (277)
T ss_pred             cEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccchheEEEeccCCCcceEe
Confidence            99999999999999999764321   23589999999999999999999987   899999999999998654   5999


Q ss_pred             EeecCCccccCCCcce---eecccceEEecccc
Q 005587          656 SDCGLAPLISSGSVSQ---VSHNLTIMRAGGVT  685 (689)
Q Consensus       656 ~DFGla~~~~~~~~~~---~~~~~~~~~apE~~  685 (689)
                      +|||+++.+.......   .......|+|||++
T Consensus       161 ~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  193 (277)
T cd05036         161 ADFGMARDIYRASYYRKGGRAMLPIKWMPPEAF  193 (277)
T ss_pred             ccCccccccCCccceecCCCCCccHhhCCHHHH
Confidence            9999999874333211   11223469999986

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.90  E-value=1.1e-23  Score=230.18  Aligned_cols=163  Identities=18%  Similarity=0.182  Sum_probs=139.1

Q ss_pred             cCCCccceEeecCCeEEEEEEeC---CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP---DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLI  585 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~---~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV  585 (689)
                      .+|.+.+.||+|+||.||+|...   .+..||+|.+...       ..+.+|++++++++|||||++++++...+..++|
T Consensus        92 ~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~-------~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv  164 (392)
T PHA03207         92 MQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG-------KTPGREIDILKTISHRAIINLIHAYRWKSTVCMV  164 (392)
T ss_pred             CceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc-------ccHHHHHHHHHhcCCCCccceeeeEeeCCEEEEE
Confidence            46889999999999999999643   3578999987542       2345799999999999999999999999999999


Q ss_pred             EeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcccc
Q 005587          586 YEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS  665 (689)
Q Consensus       586 ~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~  665 (689)
                      |||+. ++|.+++..    ...+++..++.|+.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+++.+.
T Consensus       165 ~e~~~-~~l~~~l~~----~~~l~~~~~~~i~~ql~~aL~~LH~~---givHrDlkp~Nill~~~~~~~l~DfG~a~~~~  236 (392)
T PHA03207        165 MPKYK-CDLFTYVDR----SGPLPLEQAITIQRRLLEALAYLHGR---GIIHRDVKTENIFLDEPENAVLGDFGAACKLD  236 (392)
T ss_pred             ehhcC-CCHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEcCCCCEEEccCccccccC
Confidence            99995 688888843    34689999999999999999999987   89999999999999999999999999998776


Q ss_pred             CCCcc---eeecccceEEeccccc
Q 005587          666 SGSVS---QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       666 ~~~~~---~~~~~~~~~~apE~~~  686 (689)
                      .....   ....++..|+|||++.
T Consensus       237 ~~~~~~~~~~~~gt~~y~aPE~~~  260 (392)
T PHA03207        237 AHPDTPQCYGWSGTLETNSPELLA  260 (392)
T ss_pred             cccccccccccccccCccCHhHhc
Confidence            54322   2245778899999984

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.90  E-value=2e-23  Score=214.51  Aligned_cols=171  Identities=27%  Similarity=0.439  Sum_probs=145.8

Q ss_pred             ccCCCccceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      .++|.+.+.||+|+||.||+|...+++.||||.+.....   ...++.+|+.++++++|+||+++++++......++|||
T Consensus         5 ~~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   81 (261)
T cd05034           5 RESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTM---SPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTE   81 (261)
T ss_pred             hhheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCcc---CHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEEEe
Confidence            367888999999999999999887888999999875432   34678899999999999999999999999899999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+++++|.+++....  ...+++..+..++.|++.||.|||+.   +|+|+||||+||++++++.+||+|||+++.+...
T Consensus        82 ~~~~~~L~~~i~~~~--~~~~~~~~~~~~~~~i~~al~~lh~~---~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~  156 (261)
T cd05034          82 YMSKGSLLDFLKSGE--GKKLRLPQLVDMAAQIAEGMAYLESR---NYIHRDLAARNILVGENLVCKIADFGLARLIEDD  156 (261)
T ss_pred             ccCCCCHHHHHhccc--cCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcchheEEEcCCCCEEECccccceeccch
Confidence            999999999997643  34689999999999999999999987   8999999999999999999999999999887643


Q ss_pred             Ccce--eecccceEEeccccc
Q 005587          668 SVSQ--VSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~~~--~~~~~~~~~apE~~~  686 (689)
                      ....  .......|+|||.+.
T Consensus       157 ~~~~~~~~~~~~~y~~PE~~~  177 (261)
T cd05034         157 EYTAREGAKFPIKWTAPEAAN  177 (261)
T ss_pred             hhhhhhccCCCccccCHHHhc
Confidence            2211  112234699999874

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.90  E-value=1.8e-23  Score=217.13  Aligned_cols=160  Identities=23%  Similarity=0.302  Sum_probs=131.0

Q ss_pred             eEeecCCeEEEEEEeCC-------------------------CcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcc
Q 005587          516 LIGAGMLGSVYRAQLPD-------------------------GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV  570 (689)
Q Consensus       516 ~iG~G~~G~Vy~~~~~~-------------------------g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv  570 (689)
                      .||+|+||.||+|.+..                         ...||+|.+....  ......|.+|+.+++.++||||+
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~--~~~~~~~~~~~~~~~~l~h~niv   79 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSH--RDIALAFFETASLMSQVSHIHLA   79 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHH--HHHHHHHHHHHHHHhcCCCCCee
Confidence            58999999999996421                         1358889886432  23456788899999999999999


Q ss_pred             eecEEEEeCCeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCC
Q 005587          571 ELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDD  650 (689)
Q Consensus       571 ~l~~~~~~~~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~  650 (689)
                      ++++++...+..++||||+++|+|.+++...   ...+++..++.++.|+++||+|||+.   +|+||||||+|||++..
T Consensus        80 ~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~---~~~~~~~~~~~i~~qi~~~l~~lH~~---~iiH~dlkp~Nill~~~  153 (274)
T cd05076          80 FVHGVCVRGSENIMVEEFVEHGPLDVCLRKE---KGRVPVAWKITVAQQLASALSYLEDK---NLVHGNVCAKNILLARL  153 (274)
T ss_pred             eEEEEEEeCCceEEEEecCCCCcHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHcC---CccCCCCCcccEEEecc
Confidence            9999999999999999999999999998653   24688999999999999999999987   89999999999999764


Q ss_pred             C-------cEEEEeecCCccccCCCcceeecccceEEeccccc
Q 005587          651 L-------AVSVSDCGLAPLISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       651 ~-------~~kl~DFGla~~~~~~~~~~~~~~~~~~~apE~~~  686 (689)
                      +       .+|++|||++.......   ...++..|+|||.+.
T Consensus       154 ~~~~~~~~~~kl~d~g~~~~~~~~~---~~~~~~~~~aPe~~~  193 (274)
T cd05076         154 GLAEGTSPFIKLSDPGVSFTALSRE---ERVERIPWIAPECVP  193 (274)
T ss_pred             CcccCccceeeecCCcccccccccc---ccccCCcccCchhhc
Confidence            3       38999999987553322   124567799999774

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.90  E-value=2.4e-23  Score=219.36  Aligned_cols=172  Identities=26%  Similarity=0.381  Sum_probs=142.6

Q ss_pred             cCCCccceEeecCCeEEEEEEe------CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcC-CCCCcceecEEEEeCCe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL------PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHANIVELKGYCAEHGQ  581 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~------~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~~~~  581 (689)
                      ++|.+.+.||+|+||.||+|..      .++..||||.+..... ....+.+.+|+++++++ +||||+++++++...+.
T Consensus        35 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~  113 (302)
T cd05055          35 NNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAH-SSEREALMSELKIMSHLGNHENIVNLLGACTIGGP  113 (302)
T ss_pred             HHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCC-hHHHHHHHHHHHHHHhccCCCCcceEEEEEecCCc
Confidence            4688889999999999999963      1356899998865432 33456788999999999 79999999999999999


Q ss_pred             EEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCC
Q 005587          582 RLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA  661 (689)
Q Consensus       582 ~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla  661 (689)
                      .++||||+.+|+|.++++...  ...+++.+++.++.|++.||+|||+.   +|+|+||||+|||++.++.+||+|||++
T Consensus       114 ~~lv~e~~~~~~L~~~i~~~~--~~~l~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~l~dfg~~  188 (302)
T cd05055         114 ILVITEYCCYGDLLNFLRRKR--ESFLTLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNVLLTHGKIVKICDFGLA  188 (302)
T ss_pred             eEEEEEcCCCCcHHHHHHhCC--CCCCCHHHHHHHHHHHHHHHHHHHHC---CeehhhhccceEEEcCCCeEEECCCccc
Confidence            999999999999999997532  23489999999999999999999987   8999999999999999999999999999


Q ss_pred             ccccCCCcce---eecccceEEeccccc
Q 005587          662 PLISSGSVSQ---VSHNLTIMRAGGVTH  686 (689)
Q Consensus       662 ~~~~~~~~~~---~~~~~~~~~apE~~~  686 (689)
                      +.+.......   ....+..|+|||.+.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~  216 (302)
T cd05055         189 RDIMNDSNYVVKGNARLPVKWMAPESIF  216 (302)
T ss_pred             ccccCCCceeecCCCCcccccCCHhhhc
Confidence            8765443211   122345699999763

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.90  E-value=1.8e-23  Score=217.39  Aligned_cols=170  Identities=24%  Similarity=0.343  Sum_probs=146.2

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      ++|++.+.||+|+||.||+|... ++..||+|.+...  .......|.+|++++++++||||+++++++...+..|+|||
T Consensus         5 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (280)
T cd06611           5 DIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIE--SEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILIE   82 (280)
T ss_pred             hHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeC--CHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEee
Confidence            56888899999999999999764 6889999998643  23445678899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+++++|.+++...   ...+++..++.++.|++.||.|||+.   +|+|+||||+||+++.++.++|+|||++......
T Consensus        83 ~~~~~~L~~~~~~~---~~~l~~~~~~~~~~ql~~~l~~lh~~---~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~  156 (280)
T cd06611          83 FCDGGALDSIMLEL---ERGLTEPQIRYVCRQMLEALNFLHSH---KVIHRDLKAGNILLTLDGDVKLADFGVSAKNKST  156 (280)
T ss_pred             ccCCCcHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEECCCCCEEEccCccchhhccc
Confidence            99999999998753   24689999999999999999999987   8999999999999999999999999998776443


Q ss_pred             C-cceeecccceEEeccccc
Q 005587          668 S-VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~-~~~~~~~~~~~~apE~~~  686 (689)
                      . ......++..|++||++.
T Consensus       157 ~~~~~~~~~~~~y~~PE~~~  176 (280)
T cd06611         157 LQKRDTFIGTPYWMAPEVVA  176 (280)
T ss_pred             ccccceeecchhhcCHHHHh
Confidence            2 223345677899999863

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.90  E-value=2e-23  Score=214.57  Aligned_cols=170  Identities=25%  Similarity=0.405  Sum_probs=143.1

Q ss_pred             ccCCCccceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      .+.|++.++||+|+||.||+|..++++.||+|.+.....   ....+.+|+.++++++|+||+++++++. .+..++|||
T Consensus         5 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~---~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e   80 (260)
T cd05067           5 RETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSM---SPEAFLAEANLMKQLQHPRLVRLYAVVT-QEPIYIITE   80 (260)
T ss_pred             hHHceeeeeeccCccceEEeeecCCCceEEEEEecCCCC---cHHHHHHHHHHHHhcCCcCeeeEEEEEc-cCCcEEEEE
Confidence            357888999999999999999988899999999875433   3457889999999999999999999864 567899999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+.+|+|.+++....  ...+++.++..++.|++.||+|||+.   +++||||||+||++++++.++|+|||++......
T Consensus        81 ~~~~~~L~~~~~~~~--~~~~~~~~~~~i~~~i~~al~~LH~~---~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~  155 (260)
T cd05067          81 YMENGSLVDFLKTPE--GIKLTINKLIDMAAQIAEGMAFIERK---NYIHRDLRAANILVSETLCCKIADFGLARLIEDN  155 (260)
T ss_pred             cCCCCCHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHHhEEEcCCCCEEEccCcceeecCCC
Confidence            999999999987533  34688999999999999999999987   8999999999999999999999999999877643


Q ss_pred             Cccee--ecccceEEeccccc
Q 005587          668 SVSQV--SHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~~~~--~~~~~~~~apE~~~  686 (689)
                      .....  ..+...|+|||++.
T Consensus       156 ~~~~~~~~~~~~~y~~pe~~~  176 (260)
T cd05067         156 EYTAREGAKFPIKWTAPEAIN  176 (260)
T ss_pred             CcccccCCcccccccCHHHhc
Confidence            32211  22234699999863

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.90  E-value=3.3e-23  Score=215.47  Aligned_cols=170  Identities=24%  Similarity=0.401  Sum_probs=141.3

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCc----EEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGK----LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRL  583 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~----~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~  583 (689)
                      .+|++.+.||+|+||.||+|... +|+    .||+|.+..... .....++.+|+..+++++||||+++++++.. ...+
T Consensus         7 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~   84 (279)
T cd05057           7 TELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETS-PKANKEILDEAYVMASVDHPHVVRLLGICLS-SQVQ   84 (279)
T ss_pred             HHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCC-HHHHHHHHHHHHHHHhCCCCCcceEEEEEec-CceE
Confidence            46778899999999999999754 333    589998765432 4455778899999999999999999999987 7889


Q ss_pred             EEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcc
Q 005587          584 LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPL  663 (689)
Q Consensus       584 lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~  663 (689)
                      +||||+++|+|.+++....   ..+++..++.++.|+++||+|||+.   +|+||||||+||++++++.+||+|||+++.
T Consensus        85 ~v~e~~~~g~L~~~l~~~~---~~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~di~p~nil~~~~~~~kL~dfg~~~~  158 (279)
T cd05057          85 LITQLMPLGCLLDYVRNHK---DNIGSQYLLNWCVQIAKGMSYLEEK---RLVHRDLAARNVLVKTPQHVKITDFGLAKL  158 (279)
T ss_pred             EEEecCCCCcHHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHhC---CEEecccCcceEEEcCCCeEEECCCccccc
Confidence            9999999999999997642   3489999999999999999999987   899999999999999999999999999998


Q ss_pred             ccCCCcceeecc---cceEEeccccc
Q 005587          664 ISSGSVSQVSHN---LTIMRAGGVTH  686 (689)
Q Consensus       664 ~~~~~~~~~~~~---~~~~~apE~~~  686 (689)
                      +..........+   ...|+|||.+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~y~~PE~~~  184 (279)
T cd05057         159 LDVDEKEYHAEGGKVPIKWMALESIL  184 (279)
T ss_pred             ccCcccceecCCCcccccccCHHHhh
Confidence            765443222111   34699999763

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.90  E-value=4.8e-23  Score=212.65  Aligned_cols=171  Identities=22%  Similarity=0.314  Sum_probs=141.6

Q ss_pred             cCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCC---hhhHHHHHHHHHHHhcCCCCCcceecEEEEe--CCeE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASS---QQKDDEFLELVNNIDRIRHANIVELKGYCAE--HGQR  582 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~---~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~--~~~~  582 (689)
                      .+|+..+.||+|+||.||+|.. .++..||+|.+......   ......+.+|+.++++++||||+++++++..  .+..
T Consensus         2 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (266)
T cd06651           2 INWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTL   81 (266)
T ss_pred             CCccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEE
Confidence            3688899999999999999965 46899999988654221   2334568899999999999999999999876  3678


Q ss_pred             EEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCc
Q 005587          583 LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAP  662 (689)
Q Consensus       583 ~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~  662 (689)
                      +++|||+++++|.+++...    ..+++...+.++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++
T Consensus        82 ~l~~e~~~~~~L~~~l~~~----~~l~~~~~~~~~~qi~~~l~~LH~~---~i~H~~l~p~nil~~~~~~~~l~dfg~~~  154 (266)
T cd06651          82 TIFMEYMPGGSVKDQLKAY----GALTESVTRKYTRQILEGMSYLHSN---MIVHRDIKGANILRDSAGNVKLGDFGASK  154 (266)
T ss_pred             EEEEeCCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEccCCCcc
Confidence            8999999999999999753    3578899999999999999999987   89999999999999999999999999998


Q ss_pred             cccCCC----cceeecccceEEeccccc
Q 005587          663 LISSGS----VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       663 ~~~~~~----~~~~~~~~~~~~apE~~~  686 (689)
                      .+....    ......++..|+|||.+.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~  182 (266)
T cd06651         155 RLQTICMSGTGIRSVTGTPYWMSPEVIS  182 (266)
T ss_pred             ccccccccCCccccCCccccccCHHHhC
Confidence            764321    112234567799999874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.90  E-value=3.9e-23  Score=218.96  Aligned_cols=152  Identities=30%  Similarity=0.409  Sum_probs=134.1

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCCh-hhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQ-QKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~-~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      ++|+..+.||+|+||.||+|... +++.||+|.+....... .....+.+|+++++.++|+||+++++++...+..++||
T Consensus         1 ~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   80 (316)
T cd05574           1 KHFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVM   80 (316)
T ss_pred             CceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEE
Confidence            36888899999999999999765 58999999987654332 34567889999999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcccc
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS  665 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~  665 (689)
                      ||+.+++|.+++....  ...+++..+..++.|+++||.|||+.   +++|+||||+||+++.++.++|+|||++....
T Consensus        81 e~~~~~~L~~~~~~~~--~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~  154 (316)
T cd05574          81 DYCPGGELFRLLQRQP--GKCLSEEVARFYAAEVLLALEYLHLL---GIVYRDLKPENILLHESGHIMLSDFDLSKQSD  154 (316)
T ss_pred             EecCCCCHHHHHHhCC--CCccCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChHHeEEcCCCCEEEeecchhhccc
Confidence            9999999999987532  34689999999999999999999987   89999999999999999999999999988654

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.90  E-value=3.4e-23  Score=213.85  Aligned_cols=171  Identities=26%  Similarity=0.466  Sum_probs=142.2

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CC---cEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DG---KLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLL  584 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g---~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~l  584 (689)
                      ++|+..+.||+|+||.||+|... ++   ..+|+|.+..... ......+..|++++++++||||+++++++...+..++
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   83 (268)
T cd05063           5 SHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYT-EKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPAMI   83 (268)
T ss_pred             HHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCC-HHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCcEE
Confidence            46777899999999999999764 33   3799998865432 3345678899999999999999999999999999999


Q ss_pred             EEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccc
Q 005587          585 IYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI  664 (689)
Q Consensus       585 V~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~  664 (689)
                      ||||+++++|.+++...   ...+++.++..++.|++.||+|||+.   +++||||||+||++++++.+||+|||++...
T Consensus        84 v~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~  157 (268)
T cd05063          84 ITEYMENGALDKYLRDH---DGEFSSYQLVGMLRGIAAGMKYLSDM---NYVHRDLAARNILVNSNLECKVSDFGLSRVL  157 (268)
T ss_pred             EEEcCCCCCHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccchhhEEEcCCCcEEECCCccceec
Confidence            99999999999998753   23589999999999999999999987   8999999999999999999999999999877


Q ss_pred             cCCCcceee----cccceEEeccccc
Q 005587          665 SSGSVSQVS----HNLTIMRAGGVTH  686 (689)
Q Consensus       665 ~~~~~~~~~----~~~~~~~apE~~~  686 (689)
                      .........    .....|+|||++.
T Consensus       158 ~~~~~~~~~~~~~~~~~~y~~PE~~~  183 (268)
T cd05063         158 EDDPEGTYTTSGGKIPIRWTAPEAIA  183 (268)
T ss_pred             ccccccceeccCCCcCceecCHHHhh
Confidence            544322211    1123599999874

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.90  E-value=2.9e-23  Score=215.88  Aligned_cols=175  Identities=21%  Similarity=0.291  Sum_probs=144.7

Q ss_pred             ccCCCccceEeecCCeEEEEEEeCC-----CcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEe-CCe
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQLPD-----GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAE-HGQ  581 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~~~~-----g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~-~~~  581 (689)
                      .++|.+.+.||+|+||.||+|....     +..|++|.+.... .......+.+|+.++++++|+||+++++++.. ...
T Consensus         5 ~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~-~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~   83 (280)
T cd05043           5 RDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHA-SEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGEP   83 (280)
T ss_pred             hhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCC-CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence            3578889999999999999997655     6889999886432 34456778899999999999999999998876 567


Q ss_pred             EEEEEeccCCCCHHHHHhcCccc----CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEe
Q 005587          582 RLLIYEYCSNGTLQDMLHSDDEL----KNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSD  657 (689)
Q Consensus       582 ~~lV~Ey~~ggsL~~~l~~~~~~----~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~D  657 (689)
                      .++++||+++|+|.+++......    ...+++..++.++.|++.||+|||+.   +++||||||+||++++++.+||+|
T Consensus        84 ~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~---~i~H~di~p~nil~~~~~~~kl~d  160 (280)
T cd05043          84 PFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKR---GVIHKDIAARNCVIDEELQVKITD  160 (280)
T ss_pred             CEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCHhhEEEcCCCcEEECC
Confidence            89999999999999998764322    14689999999999999999999987   899999999999999999999999


Q ss_pred             ecCCccccCCCcce---eecccceEEeccccc
Q 005587          658 CGLAPLISSGSVSQ---VSHNLTIMRAGGVTH  686 (689)
Q Consensus       658 FGla~~~~~~~~~~---~~~~~~~~~apE~~~  686 (689)
                      ||+++.+.......   ...++..|+|||.+.
T Consensus       161 ~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~  192 (280)
T cd05043         161 NALSRDLFPMDYHCLGDNENRPVKWMALESLV  192 (280)
T ss_pred             CCCcccccCCceEEeCCCCCcchhccCHHHHh
Confidence            99998765443221   122345699999874

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.90  E-value=4.8e-23  Score=212.81  Aligned_cols=176  Identities=23%  Similarity=0.273  Sum_probs=143.6

Q ss_pred             hhhccCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEE
Q 005587          505 QQYTNSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRL  583 (689)
Q Consensus       505 ~~~~~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~  583 (689)
                      +..++++.....||+|+||.||+|... ++..||+|.+....  ....+.+.+|++++++++|+||+++++++...+..+
T Consensus         4 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~   81 (268)
T cd06624           4 EYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERD--SRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFK   81 (268)
T ss_pred             ccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCC--HHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEE
Confidence            344556666778999999999999754 67889999886543  345567899999999999999999999999999999


Q ss_pred             EEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecC-CCcEEEEeecCCc
Q 005587          584 LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDD-DLAVSVSDCGLAP  662 (689)
Q Consensus       584 lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~-~~~~kl~DFGla~  662 (689)
                      +||||+++++|.+++..... ....++..+..++.|+++||.|||+.   +|+||||||+||+++. ++.+||+|||++.
T Consensus        82 lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~~~qi~~al~~lH~~---~i~h~dl~p~nil~~~~~~~~~l~dfg~~~  157 (268)
T cd06624          82 IFMEQVPGGSLSALLRSKWG-PLKDNEQTIIFYTKQILEGLKYLHDN---QIVHRDIKGDNVLVNTYSGVVKISDFGTSK  157 (268)
T ss_pred             EEEecCCCCCHHHHHHHhcc-cCCCcHHHHHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEcCCCCeEEEecchhhe
Confidence            99999999999999975321 11227888899999999999999987   8999999999999986 6799999999998


Q ss_pred             cccCCCc-ceeecccceEEeccccc
Q 005587          663 LISSGSV-SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       663 ~~~~~~~-~~~~~~~~~~~apE~~~  686 (689)
                      .+..... .....++..|+|||++.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~aPE~~~  182 (268)
T cd06624         158 RLAGINPCTETFTGTLQYMAPEVID  182 (268)
T ss_pred             ecccCCCccccCCCCccccChhhhc
Confidence            7643322 22234567899999863

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.90  E-value=2.9e-23  Score=221.93  Aligned_cols=174  Identities=24%  Similarity=0.390  Sum_probs=141.8

Q ss_pred             cCCCccceEeecCCeEEEEEEeC--------CCcEEEEEEeccccCChhhHHHHHHHHHHHhcC-CCCCcceecEEEEeC
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP--------DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHANIVELKGYCAEH  579 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~--------~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~~  579 (689)
                      .+|.+.+.||+|+||.||+|+..        .+..||+|.+.... ......++.+|+++++++ +||||+++++++...
T Consensus        12 ~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~   90 (334)
T cd05100          12 TRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDA-TDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD   90 (334)
T ss_pred             hHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEccccc-CHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccC
Confidence            35788899999999999999642        12368999876432 234456888999999999 899999999999999


Q ss_pred             CeEEEEEeccCCCCHHHHHhcCcc------------cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEe
Q 005587          580 GQRLLIYEYCSNGTLQDMLHSDDE------------LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILL  647 (689)
Q Consensus       580 ~~~~lV~Ey~~ggsL~~~l~~~~~------------~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl  647 (689)
                      +..++||||+++|+|.+++.....            ....++|..++.++.|+++||.|||+.   +|+||||||+|||+
T Consensus        91 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~---givH~dlkp~Nill  167 (334)
T cd05100          91 GPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQ---KCIHRDLAARNVLV  167 (334)
T ss_pred             CceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHC---CeeccccccceEEE
Confidence            999999999999999999975321            123588999999999999999999987   89999999999999


Q ss_pred             cCCCcEEEEeecCCccccCCCccee---ecccceEEeccccc
Q 005587          648 DDDLAVSVSDCGLAPLISSGSVSQV---SHNLTIMRAGGVTH  686 (689)
Q Consensus       648 ~~~~~~kl~DFGla~~~~~~~~~~~---~~~~~~~~apE~~~  686 (689)
                      +.++.+||+|||+++.+........   ......|+|||++.
T Consensus       168 ~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  209 (334)
T cd05100         168 TEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALF  209 (334)
T ss_pred             cCCCcEEECCcccceecccccccccccCCCcCceEcCHHHhc
Confidence            9999999999999987654332111   11234699999874

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.90  E-value=3e-23  Score=213.99  Aligned_cols=170  Identities=23%  Similarity=0.365  Sum_probs=143.2

Q ss_pred             CCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCC----hhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEE
Q 005587          510 SFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASS----QQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLL  584 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~----~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~l  584 (689)
                      +|+..+.||+|+||.||+|.. .+++.||+|.+......    ......+.+|++++++++|+||+++++++...+..++
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   80 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNL   80 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEE
Confidence            477889999999999999964 57899999998654321    1234678899999999999999999999999999999


Q ss_pred             EEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCC-cEEEEeecCCcc
Q 005587          585 IYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDL-AVSVSDCGLAPL  663 (689)
Q Consensus       585 V~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~-~~kl~DFGla~~  663 (689)
                      ||||+++++|.+++...    ..+++..+..++.|++.||.|||+.   +++|+||||+||+++.++ .+||+|||++..
T Consensus        81 v~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~ql~~al~~LH~~---~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~  153 (268)
T cd06630          81 FVEWMAGGSVSHLLSKY----GAFKEAVIINYTEQLLRGLSYLHEN---QIIHRDVKGANLLIDSTGQRLRIADFGAAAR  153 (268)
T ss_pred             EEeccCCCcHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEEcccccccc
Confidence            99999999999999753    4678999999999999999999987   899999999999998776 599999999988


Q ss_pred             ccCCCcc-----eeecccceEEeccccc
Q 005587          664 ISSGSVS-----QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       664 ~~~~~~~-----~~~~~~~~~~apE~~~  686 (689)
                      +......     ....++..|+|||++.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~PE~~~  181 (268)
T cd06630         154 LAAKGTGAGEFQGQLLGTIAFMAPEVLR  181 (268)
T ss_pred             cccccccCCccccccccccceeCHhHhc
Confidence            7643211     1234567899999874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.90  E-value=3.3e-23  Score=212.47  Aligned_cols=166  Identities=28%  Similarity=0.424  Sum_probs=139.5

Q ss_pred             cCCCccceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEE-eCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCA-EHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~-~~~~~~lV~E  587 (689)
                      ++|++.+.||+|+||.||++.. .|..||+|.+...    ...+.+.+|+.++++++|+||+++++++. ..+..++|||
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~-~~~~~~~k~~~~~----~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e   80 (256)
T cd05082           6 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKND----ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTE   80 (256)
T ss_pred             HhCeeeeeecccCCCeEEEEEE-cCCcEEEEEeCCC----chHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEE
Confidence            4678889999999999999976 4788999988543    23457889999999999999999999765 4567899999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+++|+|.++++...  ...+++..++.++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++.....
T Consensus        81 ~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~  155 (256)
T cd05082          81 YMAKGSLVDYLRSRG--RSVLGGDCLLKFSLDVCEAMEYLEAN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST  155 (256)
T ss_pred             CCCCCcHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHHhC---CEeccccchheEEEcCCCcEEecCCccceecccc
Confidence            999999999997643  23588999999999999999999987   8999999999999999999999999999876543


Q ss_pred             CcceeecccceEEeccccc
Q 005587          668 SVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~~~~~~~~~~~~apE~~~  686 (689)
                      ...  ......|+|||++.
T Consensus       156 ~~~--~~~~~~y~aPE~~~  172 (256)
T cd05082         156 QDT--GKLPVKWTAPEALR  172 (256)
T ss_pred             CCC--CccceeecCHHHHc
Confidence            321  23345799999874

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.90  E-value=2.2e-23  Score=218.36  Aligned_cols=171  Identities=23%  Similarity=0.302  Sum_probs=143.8

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeC--CeEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEH--GQRLLI  585 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~--~~~~lV  585 (689)
                      ++|+..+.||+|+||.||+|... +++.+|+|.+............+.+|+.++++++||||+++++++...  +..|+|
T Consensus         5 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~lv   84 (293)
T cd07843           5 DEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYMV   84 (293)
T ss_pred             hhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEEE
Confidence            46888899999999999999765 588999999875543333345677899999999999999999999887  899999


Q ss_pred             EeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcccc
Q 005587          586 YEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS  665 (689)
Q Consensus       586 ~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~  665 (689)
                      |||+. ++|.+++....   ..+++..++.++.|+++||+|||+.   +|+|+||||+||++++++.+||+|||+++.+.
T Consensus        85 ~e~~~-~~L~~~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~---~i~H~dl~p~nili~~~~~~~l~d~g~~~~~~  157 (293)
T cd07843          85 MEYVE-HDLKSLMETMK---QPFLQSEVKCLMLQLLSGVAHLHDN---WILHRDLKTSNLLLNNRGILKICDFGLAREYG  157 (293)
T ss_pred             ehhcC-cCHHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCcEEEeecCceeecc
Confidence            99997 49999887532   3689999999999999999999987   89999999999999999999999999999876


Q ss_pred             CCCc-ceeecccceEEeccccc
Q 005587          666 SGSV-SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       666 ~~~~-~~~~~~~~~~~apE~~~  686 (689)
                      .... .....++..|+|||++.
T Consensus       158 ~~~~~~~~~~~~~~~~aPE~~~  179 (293)
T cd07843         158 SPLKPYTQLVVTLWYRAPELLL  179 (293)
T ss_pred             CCccccccccccccccCchhhc
Confidence            5422 22234567799999874

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>PTZ00284 protein kinase; Provisional

Probab=99.90  E-value=6e-23  Score=229.61  Aligned_cols=171  Identities=18%  Similarity=0.242  Sum_probs=133.0

Q ss_pred             HhhhccCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcC------CCCCcceecEEE
Q 005587          504 LQQYTNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI------RHANIVELKGYC  576 (689)
Q Consensus       504 l~~~~~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l------~HpnIv~l~~~~  576 (689)
                      +....++|++.++||+|+||.||+|.. .+++.||||+++...   ...+.+..|++++..+      .|.+|+++++++
T Consensus       124 ~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~---~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~  200 (467)
T PTZ00284        124 IDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVP---KYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYF  200 (467)
T ss_pred             cccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecch---hhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEE
Confidence            334567899999999999999999965 468899999986421   1223344455555554      455688999988


Q ss_pred             EeC-CeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCC----
Q 005587          577 AEH-GQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDL----  651 (689)
Q Consensus       577 ~~~-~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~----  651 (689)
                      ... +..++|||++ +++|.+++...    ..+++..+..|+.||+.||+|||+.  .+||||||||+|||++.++    
T Consensus       201 ~~~~~~~~iv~~~~-g~~l~~~l~~~----~~l~~~~~~~i~~qi~~aL~yLH~~--~gIiHrDlKP~NILl~~~~~~~~  273 (467)
T PTZ00284        201 QNETGHMCIVMPKY-GPCLLDWIMKH----GPFSHRHLAQIIFQTGVALDYFHTE--LHLMHTDLKPENILMETSDTVVD  273 (467)
T ss_pred             EcCCceEEEEEecc-CCCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHhc--CCeecCCCCHHHEEEecCCcccc
Confidence            764 5789999998 77899888753    4689999999999999999999973  2899999999999998765    


Q ss_pred             ------------cEEEEeecCCccccCCCcceeecccceEEeccccc
Q 005587          652 ------------AVSVSDCGLAPLISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       652 ------------~~kl~DFGla~~~~~~~~~~~~~~~~~~~apE~~~  686 (689)
                                  .+||+|||++.......  ....++..|+|||++.
T Consensus       274 ~~~~~~~~~~~~~vkl~DfG~~~~~~~~~--~~~~gt~~Y~APE~~~  318 (467)
T PTZ00284        274 PVTNRALPPDPCRVRICDLGGCCDERHSR--TAIVSTRHYRSPEVVL  318 (467)
T ss_pred             cccccccCCCCceEEECCCCccccCcccc--ccccCCccccCcHHhh
Confidence                        49999999987543322  2356788999999984

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.90  E-value=2.5e-23  Score=220.94  Aligned_cols=160  Identities=18%  Similarity=0.187  Sum_probs=124.7

Q ss_pred             ccCCCccceEeecCCeEEEEEEeC--CCcEEEEEEeccccC---ChhhHHHHHHHHHHHhcCCCCCcce-ecEEEEeCCe
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQLP--DGKLLAVKKLDKRAS---SQQKDDEFLELVNNIDRIRHANIVE-LKGYCAEHGQ  581 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~~~--~g~~vAvK~l~~~~~---~~~~~~~~~~e~~~l~~l~HpnIv~-l~~~~~~~~~  581 (689)
                      .+.|.+.+.||+|+||+||+|.+.  +++.||||++.....   .....+.|.+|++++++++|+||+. +++    .+.
T Consensus        17 ~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~----~~~   92 (365)
T PRK09188         17 SARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLA----TGK   92 (365)
T ss_pred             cCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEE----cCC
Confidence            357889999999999999999654  577789998753311   2234567899999999999999985 443    246


Q ss_pred             EEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecc-cCCCeEecCCCcEEEEeecC
Q 005587          582 RLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNF-KSANILLDDDLAVSVSDCGL  660 (689)
Q Consensus       582 ~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDl-Kp~NILl~~~~~~kl~DFGl  660 (689)
                      .|+|||||+|++|... ..    ..      ...++.|+++||.|||+.   +|+|||| ||+|||++.++.+||+|||+
T Consensus        93 ~~LVmE~~~G~~L~~~-~~----~~------~~~~~~~i~~aL~~lH~~---gIiHrDL~KP~NILv~~~~~ikLiDFGl  158 (365)
T PRK09188         93 DGLVRGWTEGVPLHLA-RP----HG------DPAWFRSAHRALRDLHRA---GITHNDLAKPQNWLMGPDGEAAVIDFQL  158 (365)
T ss_pred             cEEEEEccCCCCHHHh-Cc----cc------hHHHHHHHHHHHHHHHHC---CCeeCCCCCcceEEEcCCCCEEEEECcc
Confidence            8999999999999732 11    00      146788999999999987   8999999 99999999999999999999


Q ss_pred             CccccCCCccee---------ecccceEEecccc
Q 005587          661 APLISSGSVSQV---------SHNLTIMRAGGVT  685 (689)
Q Consensus       661 a~~~~~~~~~~~---------~~~~~~~~apE~~  685 (689)
                      |+.+...+....         ..++..|+|||.+
T Consensus       159 A~~~~~~~~~~~~~~~~d~~~~~~~~~~~~pe~~  192 (365)
T PRK09188        159 ASVFRRRGALYRIAAYEDLRHLLKHKRTYAPDAL  192 (365)
T ss_pred             ceecccCcchhhhhhhhhhhhhhccCccCCcccC
Confidence            998766543322         2234458899987

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.90  E-value=8.4e-25  Score=249.41  Aligned_cols=175  Identities=29%  Similarity=0.394  Sum_probs=150.3

Q ss_pred             hhhccCCCccceEeecCCeEEEEE-EeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEE
Q 005587          505 QQYTNSFSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRL  583 (689)
Q Consensus       505 ~~~~~~f~~~~~iG~G~~G~Vy~~-~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~  583 (689)
                      +..+-+++....||.|.||.||-| ...+|...|+|.+..............+|+.++..++|||+|+++|+=.+++..+
T Consensus      1231 snV~~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~ 1310 (1509)
T KOG4645|consen 1231 SNVTFRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVY 1310 (1509)
T ss_pred             ccceeeeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHHHHH
Confidence            344557788899999999999999 4668999999988766554555667889999999999999999999999999999


Q ss_pred             EEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcc
Q 005587          584 LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPL  663 (689)
Q Consensus       584 lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~  663 (689)
                      |.||||++|+|.+++...    ...++.....+..|++.|+.|||+.   +||||||||+||+||.+|.+|++|||-|+.
T Consensus      1311 IFMEyC~~GsLa~ll~~g----ri~dE~vt~vyt~qll~gla~LH~~---gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~k 1383 (1509)
T KOG4645|consen 1311 IFMEYCEGGSLASLLEHG----RIEDEMVTRVYTKQLLEGLAYLHEH---GIVHRDIKPANILLDFNGLIKYGDFGSAVK 1383 (1509)
T ss_pred             HHHHHhccCcHHHHHHhc----chhhhhHHHHHHHHHHHHHHHHHhc---CceecCCCccceeeecCCcEEeecccceeE
Confidence            999999999999999753    3455666677889999999999997   899999999999999999999999999998


Q ss_pred             ccCCC-----cceeecccceEEeccccc
Q 005587          664 ISSGS-----VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       664 ~~~~~-----~~~~~~~~~~~~apE~~~  686 (689)
                      +...-     .-+...||+.|||||++-
T Consensus      1384 i~~~~~~~~~el~~~~GT~~YMAPEvit 1411 (1509)
T KOG4645|consen 1384 IKNNAQTMPGELQSMMGTPMYMAPEVIT 1411 (1509)
T ss_pred             ecCchhcCCHHHHhhcCCchhcCchhhc
Confidence            76532     224578999999999983

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.90  E-value=3.2e-23  Score=213.75  Aligned_cols=161  Identities=24%  Similarity=0.325  Sum_probs=133.0

Q ss_pred             ceEeecCCeEEEEEEeCC-------------CcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCe
Q 005587          515 NLIGAGMLGSVYRAQLPD-------------GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQ  581 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~~~-------------g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~  581 (689)
                      +.||+|+||.||+|.+.+             ...|++|.+....  ......|.+|+.+++.++||||+++++++.....
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~--~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~   78 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSH--RDISLAFFETASMMRQVSHKHIVLLYGVCVRDVE   78 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhh--hhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCC
Confidence            368999999999997532             2358888875432  2344578889999999999999999999999999


Q ss_pred             EEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCc-------EE
Q 005587          582 RLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLA-------VS  654 (689)
Q Consensus       582 ~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~-------~k  654 (689)
                      .++||||+++|+|..+++..   ...+++..++.++.||++||+|||+.   +|+||||||+|||++.++.       +|
T Consensus        79 ~~lv~e~~~~~~l~~~~~~~---~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nill~~~~~~~~~~~~~~  152 (262)
T cd05077          79 NIMVEEFVEFGPLDLFMHRK---SDVLTTPWKFKVAKQLASALSYLEDK---DLVHGNVCTKNILLAREGIDGECGPFIK  152 (262)
T ss_pred             CEEEEecccCCCHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHhhhC---CeECCCCCcccEEEecCCccCCCCceeE
Confidence            99999999999999888643   23589999999999999999999987   8999999999999987664       89


Q ss_pred             EEeecCCccccCCCcceeecccceEEeccccc
Q 005587          655 VSDCGLAPLISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       655 l~DFGla~~~~~~~~~~~~~~~~~~~apE~~~  686 (689)
                      ++|||++..+....   ...++..|+|||++.
T Consensus       153 l~d~g~~~~~~~~~---~~~~~~~y~aPE~~~  181 (262)
T cd05077         153 LSDPGIPITVLSRQ---ECVERIPWIAPECVE  181 (262)
T ss_pred             eCCCCCCccccCcc---cccccccccChhhhc
Confidence            99999998764332   234567799999874

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.90  E-value=9.9e-24  Score=208.49  Aligned_cols=163  Identities=25%  Similarity=0.353  Sum_probs=137.5

Q ss_pred             cceEeecCCeEEEEE-EeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcC-CCCCcceecEEEEeCCeEEEEEeccCC
Q 005587          514 ENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHANIVELKGYCAEHGQRLLIYEYCSN  591 (689)
Q Consensus       514 ~~~iG~G~~G~Vy~~-~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~~~~~~lV~Ey~~g  591 (689)
                      .+.||+|+|+.|--+ ...+|.+||||++.+..  ........+|++++... .|+||+.+++||+++...|||||-|.|
T Consensus        83 ~e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~--gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd~~FYLVfEKm~G  160 (463)
T KOG0607|consen   83 SELLGEGAYASVQTCVSIQTGKEYAVKIIDKQP--GHSRSRVFREVETFYQCQGHKNILQLIEFFEDDTRFYLVFEKMRG  160 (463)
T ss_pred             HHHhcCccceeeeeeeeeccchhhhhhhhhcCC--chHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceEEEEEecccC
Confidence            478999999999998 57799999999998763  34456778999999888 599999999999999999999999999


Q ss_pred             CCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCC---cEEEEeecCCccccCCC
Q 005587          592 GTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDL---AVSVSDCGLAPLISSGS  668 (689)
Q Consensus       592 gsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~---~~kl~DFGla~~~~~~~  668 (689)
                      |+|..+|++    .+.+++.++.++..+|+.||.|||..   +|.||||||+|||-.+..   -+|||||.|+--+....
T Consensus       161 GplLshI~~----~~~F~E~EAs~vvkdia~aLdFlH~k---gIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k~~~  233 (463)
T KOG0607|consen  161 GPLLSHIQK----RKHFNEREASRVVKDIASALDFLHTK---GIAHRDLKPENILCESPNKVSPVKICDFDLGSGIKLNN  233 (463)
T ss_pred             chHHHHHHH----hhhccHHHHHHHHHHHHHHHHHHhhc---CcccccCCccceeecCCCCcCceeeeccccccccccCC
Confidence            999999987    45789999999999999999999987   899999999999996543   48999999876543211


Q ss_pred             --------cceeecccceEEecccc
Q 005587          669 --------VSQVSHNLTIMRAGGVT  685 (689)
Q Consensus       669 --------~~~~~~~~~~~~apE~~  685 (689)
                              .-....+...|||||+.
T Consensus       234 ~~spastP~L~tPvGSAEfMAPEVV  258 (463)
T KOG0607|consen  234 DCSPASTPELLTPVGSAEFMAPEVV  258 (463)
T ss_pred             CCCCCCCccccCcccchhhcchhHH
Confidence                    11224566679999997

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.90  E-value=4.8e-23  Score=211.83  Aligned_cols=170  Identities=28%  Similarity=0.430  Sum_probs=146.9

Q ss_pred             CCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      +|++.+.||+|+||.||+|... +++.||+|.+..........+.+.+|+.++++++|+||+++++++...+..++|+||
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEY   80 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEec
Confidence            4778899999999999999754 689999999876654444667899999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      +++++|.+++...    ..+++..+..|+.|+++||.|||+.   +|+|+||||+||++++++.+||+|||++.......
T Consensus        81 ~~~~~L~~~~~~~----~~~~~~~~~~i~~~i~~~l~~lh~~---~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~  153 (264)
T cd06626          81 CSGGTLEELLEHG----RILDEHVIRVYTLQLLEGLAYLHSH---GIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNT  153 (264)
T ss_pred             CCCCcHHHHHhhc----CCCChHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEcccccccccCCCC
Confidence            9999999999752    3478899999999999999999987   89999999999999999999999999998876543


Q ss_pred             cce-----eecccceEEeccccc
Q 005587          669 VSQ-----VSHNLTIMRAGGVTH  686 (689)
Q Consensus       669 ~~~-----~~~~~~~~~apE~~~  686 (689)
                      ...     ...++..|++||++.
T Consensus       154 ~~~~~~~~~~~~~~~~~~PE~~~  176 (264)
T cd06626         154 TTMGEEVQSLAGTPAYMAPEVIT  176 (264)
T ss_pred             CcccccccCCcCCcCccChhhcc
Confidence            322     134567799999874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.90  E-value=2.7e-23  Score=233.72  Aligned_cols=177  Identities=16%  Similarity=0.225  Sum_probs=135.1

Q ss_pred             hhccCCCccceEeecCCeEEEEEEeCC--CcEEEEEEe--------------ccc-cCChhhHHHHHHHHHHHhcCCCCC
Q 005587          506 QYTNSFSQENLIGAGMLGSVYRAQLPD--GKLLAVKKL--------------DKR-ASSQQKDDEFLELVNNIDRIRHAN  568 (689)
Q Consensus       506 ~~~~~f~~~~~iG~G~~G~Vy~~~~~~--g~~vAvK~l--------------~~~-~~~~~~~~~~~~e~~~l~~l~Hpn  568 (689)
                      ...++|++.+.||+|+||+||+|..+.  +..+++|.+              .+. .........+.+|++++++++|||
T Consensus       145 ~~~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~Hpn  224 (501)
T PHA03210        145 EFLAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHEN  224 (501)
T ss_pred             hhhhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCC
Confidence            345789999999999999999986532  222332211              110 111223456889999999999999


Q ss_pred             cceecEEEEeCCeEEEEEeccCCCCHHHHHhcCcc-cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEe
Q 005587          569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDE-LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILL  647 (689)
Q Consensus       569 Iv~l~~~~~~~~~~~lV~Ey~~ggsL~~~l~~~~~-~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl  647 (689)
                      ||++++++...+..|+|+|++. ++|.+++..... ......+..+..|+.||+.||+|||+.   +||||||||+|||+
T Consensus       225 Iv~l~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~---gIiHrDLKP~NILl  300 (501)
T PHA03210        225 ILKIEEILRSEANTYMITQKYD-FDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDK---KLIHRDIKLENIFL  300 (501)
T ss_pred             cCcEeEEEEECCeeEEEEeccc-cCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEE
Confidence            9999999999999999999995 577777654221 112234566778999999999999987   89999999999999


Q ss_pred             cCCCcEEEEeecCCccccCCCcc--eeecccceEEeccccc
Q 005587          648 DDDLAVSVSDCGLAPLISSGSVS--QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       648 ~~~~~~kl~DFGla~~~~~~~~~--~~~~~~~~~~apE~~~  686 (689)
                      +.++.+||+|||+++.+......  ....++..|+|||++.
T Consensus       301 ~~~~~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~  341 (501)
T PHA03210        301 NCDGKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILA  341 (501)
T ss_pred             CCCCCEEEEeCCCceecCcccccccccccCCcCCCCchhhc
Confidence            99999999999999987654322  2245788899999984

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.90  E-value=4.6e-23  Score=211.21  Aligned_cols=172  Identities=22%  Similarity=0.367  Sum_probs=146.2

Q ss_pred             CCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          510 SFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      +|++.+.||+|+||.||++.. .+|+.||+|.+...........++.+|++++++++||||+++++++...+..++||||
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDY   80 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEec
Confidence            477889999999999999965 4689999999875544444556889999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      +.+++|.+++....  ...+++.+++.++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||++..+....
T Consensus        81 ~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~~  155 (256)
T cd08218          81 CEGGDLYKKINAQR--GVLFPEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTV  155 (256)
T ss_pred             CCCCcHHHHHHhcc--CCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCEEEeeccceeecCcch
Confidence            99999999987532  23578999999999999999999987   89999999999999999999999999998765533


Q ss_pred             cc-eeecccceEEeccccc
Q 005587          669 VS-QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       669 ~~-~~~~~~~~~~apE~~~  686 (689)
                      .. ....++..|+|||++.
T Consensus       156 ~~~~~~~~~~~~~~pe~~~  174 (256)
T cd08218         156 ELARTCIGTPYYLSPEICE  174 (256)
T ss_pred             hhhhhccCCccccCHHHhC
Confidence            21 2234566799999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.90  E-value=1.4e-23  Score=218.67  Aligned_cols=170  Identities=19%  Similarity=0.343  Sum_probs=141.6

Q ss_pred             CCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      +|+..+.||+|+||.||+|... +|+.||+|.+............+.+|++++++++||||+++++++.+.+..++|+||
T Consensus         1 ~y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   80 (284)
T cd07839           1 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFEY   80 (284)
T ss_pred             CceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEec
Confidence            4777889999999999999764 689999999875433333345677899999999999999999999999999999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      +. ++|.+++...   ...+++..++.++.||++||.|||+.   +|+||||||+||+++.++.+||+|||+++.+....
T Consensus        81 ~~-~~l~~~~~~~---~~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~  153 (284)
T cd07839          81 CD-QDLKKYFDSC---NGDIDPEIVKSFMFQLLKGLAFCHSH---NVLHRDLKPQNLLINKNGELKLADFGLARAFGIPV  153 (284)
T ss_pred             CC-CCHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEcCCCcEEECccchhhccCCCC
Confidence            97 5888877643   24589999999999999999999987   89999999999999999999999999998765432


Q ss_pred             cc-eeecccceEEeccccc
Q 005587          669 VS-QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       669 ~~-~~~~~~~~~~apE~~~  686 (689)
                      .. ....++..|+|||++.
T Consensus       154 ~~~~~~~~~~~y~aPE~~~  172 (284)
T cd07839         154 RCYSAEVVTLWYRPPDVLF  172 (284)
T ss_pred             CCcCCCccccCCcChHHHh
Confidence            21 1223467799999863

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.90  E-value=5.1e-23  Score=212.26  Aligned_cols=169  Identities=26%  Similarity=0.416  Sum_probs=141.4

Q ss_pred             CCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCCh-------hhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeE
Q 005587          511 FSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQ-------QKDDEFLELVNNIDRIRHANIVELKGYCAEHGQR  582 (689)
Q Consensus       511 f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~-------~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~  582 (689)
                      |.+...||+|+||.||+|.. .+++.||+|.+.......       ...+.+.+|+.++++++||||+++++++...+..
T Consensus         2 ~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   81 (267)
T cd06628           2 WIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADHL   81 (267)
T ss_pred             ccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCcc
Confidence            66778999999999999965 468899999886543221       1235678899999999999999999999999999


Q ss_pred             EEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCc
Q 005587          583 LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAP  662 (689)
Q Consensus       583 ~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~  662 (689)
                      ++||||+++++|.+++...    ..+++..+..++.|++.||+|||+.   +++||||||+||++++++.+||+|||+++
T Consensus        82 ~lv~e~~~~~~L~~~l~~~----~~l~~~~~~~~~~~l~~~l~~lH~~---~ivH~di~p~nil~~~~~~~~l~dfg~~~  154 (267)
T cd06628          82 NIFLEYVPGGSVAALLNNY----GAFEETLVRNFVRQILKGLNYLHNR---GIIHRDIKGANILVDNKGGIKISDFGISK  154 (267)
T ss_pred             EEEEEecCCCCHHHHHHhc----cCccHHHHHHHHHHHHHHHHHHHhc---CcccccCCHHHEEEcCCCCEEecccCCCc
Confidence            9999999999999999753    4578889999999999999999987   89999999999999999999999999998


Q ss_pred             cccCCCcc-------eeecccceEEeccccc
Q 005587          663 LISSGSVS-------QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       663 ~~~~~~~~-------~~~~~~~~~~apE~~~  686 (689)
                      .+......       ....+...|+|||++.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~  185 (267)
T cd06628         155 KLEANSLSTKTNGARPSLQGSVFWMAPEVVK  185 (267)
T ss_pred             ccccccccCCccccccccCCCcCccChhHhc
Confidence            87632211       1123566799999863

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.90  E-value=3.3e-23  Score=216.67  Aligned_cols=170  Identities=22%  Similarity=0.334  Sum_probs=141.2

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      ++|+..+.||+|+||.||+|..+ +++.||||.+..... ......+.+|++++++++|+||+++++++...+..++|||
T Consensus         5 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   83 (291)
T cd07844           5 ETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHE-EGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLVFE   83 (291)
T ss_pred             cceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccc-cCCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEEEe
Confidence            57888999999999999999765 689999999865432 1223456789999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+.+ +|.+++....   ..+++..+..++.|+++||.|||+.   +|+||||||+||+++.++.+||+|||+++.....
T Consensus        84 ~~~~-~L~~~~~~~~---~~~~~~~~~~~~~ql~~al~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~  156 (291)
T cd07844          84 YLDT-DLKQYMDDCG---GGLSMHNVRLFLFQLLRGLAYCHQR---RVLHRDLKPQNLLISERGELKLADFGLARAKSVP  156 (291)
T ss_pred             cCCC-CHHHHHHhCC---CCCCHHHHHHHHHHHHHHHHHHHhC---CeecccCCHHHEEEcCCCCEEECccccccccCCC
Confidence            9975 9999887532   3678999999999999999999987   8999999999999999999999999999765332


Q ss_pred             Cc-ceeecccceEEeccccc
Q 005587          668 SV-SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~-~~~~~~~~~~~apE~~~  686 (689)
                      .. ......+..|+|||+..
T Consensus       157 ~~~~~~~~~~~~~~aPE~~~  176 (291)
T cd07844         157 SKTYSNEVVTLWYRPPDVLL  176 (291)
T ss_pred             CccccccccccccCCcHHhh
Confidence            21 11223466799999863

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.90  E-value=5.5e-23  Score=211.16  Aligned_cols=170  Identities=26%  Similarity=0.406  Sum_probs=146.0

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      ++|+..+.||+|+||.||+|... +++.+++|.+.....  .....+.+|++++++++||||+++++++...+..+++||
T Consensus         3 ~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~--~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e   80 (262)
T cd06613           3 EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPG--DDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVME   80 (262)
T ss_pred             cceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCch--hhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEe
Confidence            57888999999999999999764 678899999875432  245778899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+++++|.+++...   ...+++..+..++.|++.||.|||+.   +|+|+||||+||++++++.+||+|||++..+...
T Consensus        81 ~~~~~~l~~~~~~~---~~~l~~~~~~~~~~ql~~~l~~lh~~---~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~  154 (262)
T cd06613          81 YCGGGSLQDIYQVT---RGPLSELQIAYVCRETLKGLAYLHET---GKIHRDIKGANILLTEDGDVKLADFGVSAQLTAT  154 (262)
T ss_pred             CCCCCcHHHHHHhh---ccCCCHHHHHHHHHHHHHHHHHHHhC---CceecCCChhhEEECCCCCEEECccccchhhhhh
Confidence            99999999998753   24688999999999999999999987   8999999999999999999999999999876543


Q ss_pred             C-cceeecccceEEeccccc
Q 005587          668 S-VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~-~~~~~~~~~~~~apE~~~  686 (689)
                      . ......++.+|+|||++.
T Consensus       155 ~~~~~~~~~~~~y~~Pe~~~  174 (262)
T cd06613         155 IAKRKSFIGTPYWMAPEVAA  174 (262)
T ss_pred             hhccccccCCccccCchhhc
Confidence            2 222235567899999874

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.90  E-value=2.3e-23  Score=217.32  Aligned_cols=170  Identities=18%  Similarity=0.270  Sum_probs=144.9

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      ++|++.+.||+|+||+||++... +|+.||+|++..... ......+.+|+++++.++||||+++++++...+..++|||
T Consensus         5 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   83 (284)
T cd06620           5 EDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAK-SSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMCME   83 (284)
T ss_pred             HHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCc-chHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEEEe
Confidence            46778899999999999999654 688999998865432 3345778999999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+++|+|.+++...    ..+++..+..++.+++.||.|||+.+  +|+||||||+||++++++.++|+|||++..+...
T Consensus        84 ~~~~~~L~~~~~~~----~~~~~~~~~~~~~~i~~~l~~LH~~~--~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~  157 (284)
T cd06620          84 FMDCGSLDRIYKKG----GPIPVEILGKIAVAVVEGLTYLYNVH--RIMHRDIKPSNILVNSRGQIKLCDFGVSGELINS  157 (284)
T ss_pred             cCCCCCHHHHHHhc----cCCCHHHHHHHHHHHHHHHHHHHHhc--CeeccCCCHHHEEECCCCcEEEccCCcccchhhh
Confidence            99999999998752    35889999999999999999999742  7999999999999999999999999998766433


Q ss_pred             CcceeecccceEEeccccc
Q 005587          668 SVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~~~~~~~~~~~~apE~~~  686 (689)
                      ... ...++..|+|||++.
T Consensus       158 ~~~-~~~~~~~~~aPE~~~  175 (284)
T cd06620         158 IAD-TFVGTSTYMSPERIQ  175 (284)
T ss_pred             ccC-ccccCcccCCHHHHc
Confidence            322 235678899999863

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.90  E-value=3.2e-23  Score=216.53  Aligned_cols=175  Identities=27%  Similarity=0.386  Sum_probs=143.7

Q ss_pred             ccCCCccceEeecCCeEEEEEEeC------CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCe
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQLP------DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQ  581 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~  581 (689)
                      .++|+..+.||+|+||.||+|...      ++..||+|.+..... .....++.+|+.++++++||||+++++++...+.
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~   82 (288)
T cd05050           4 RNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEAS-ADMQADFQREAALMAEFDHPNIVKLLGVCAVGKP   82 (288)
T ss_pred             hHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcC-HHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCc
Confidence            357888999999999999999753      467899999865432 3445678899999999999999999999999999


Q ss_pred             EEEEEeccCCCCHHHHHhcCcc------------------cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCC
Q 005587          582 RLLIYEYCSNGTLQDMLHSDDE------------------LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSA  643 (689)
Q Consensus       582 ~~lV~Ey~~ggsL~~~l~~~~~------------------~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~  643 (689)
                      .++||||+++|+|.+++.....                  ....+++..++.++.|++.||.|||+.   +++||||||+
T Consensus        83 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~---~i~H~dl~p~  159 (288)
T cd05050          83 MCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSER---KFVHRDLATR  159 (288)
T ss_pred             cEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---CeecccccHh
Confidence            9999999999999999974321                  123578899999999999999999987   8999999999


Q ss_pred             CeEecCCCcEEEEeecCCccccCCCcc---eeecccceEEeccccc
Q 005587          644 NILLDDDLAVSVSDCGLAPLISSGSVS---QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       644 NILl~~~~~~kl~DFGla~~~~~~~~~---~~~~~~~~~~apE~~~  686 (689)
                      ||++++++.+||+|||+++.+......   ........|+|||++.
T Consensus       160 nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  205 (288)
T cd05050         160 NCLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIF  205 (288)
T ss_pred             heEecCCCceEECccccceecccCccccccCCCccChhhcCHHHHh
Confidence            999999999999999999876443221   1112234599999763

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.90  E-value=5.2e-23  Score=212.91  Aligned_cols=170  Identities=24%  Similarity=0.349  Sum_probs=141.2

Q ss_pred             CCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCC--------hhhHHHHHHHHHHHhcCCCCCcceecEEEEeCC
Q 005587          510 SFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASS--------QQKDDEFLELVNNIDRIRHANIVELKGYCAEHG  580 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~--------~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~  580 (689)
                      +|...+.||+|+||.||+|.. .+|+.||+|.+......        ....+.+.+|+.++++++||||+++++++...+
T Consensus         2 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   81 (272)
T cd06629           2 KWVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEE   81 (272)
T ss_pred             ceeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCC
Confidence            466788999999999999965 46899999988542111        112346788999999999999999999999999


Q ss_pred             eEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecC
Q 005587          581 QRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGL  660 (689)
Q Consensus       581 ~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGl  660 (689)
                      ..++||||+++|+|.+++...    ..+++..+..++.|++.||.|||+.   +++||||||+||+++.++.++|+|||+
T Consensus        82 ~~~lv~e~~~~~~L~~~l~~~----~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~~~nil~~~~~~~~l~d~~~  154 (272)
T cd06629          82 YLSIFLEYVPGGSIGSCLRTY----GRFEEQLVRFFTEQVLEGLAYLHSK---GILHRDLKADNLLVDADGICKISDFGI  154 (272)
T ss_pred             ceEEEEecCCCCcHHHHHhhc----cCCCHHHHHHHHHHHHHHHHHHhhC---CeeecCCChhhEEEcCCCeEEEeeccc
Confidence            999999999999999999763    4688899999999999999999987   899999999999999999999999999


Q ss_pred             CccccCCCcc---eeecccceEEeccccc
Q 005587          661 APLISSGSVS---QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       661 a~~~~~~~~~---~~~~~~~~~~apE~~~  686 (689)
                      ++........   ....++..|+|||++.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~y~~PE~~~  183 (272)
T cd06629         155 SKKSDDIYDNDQNMSMQGSVFWMAPEVIH  183 (272)
T ss_pred             cccccccccccccccccCCccccCHHHhc
Confidence            9876432211   1234566799999874

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.90  E-value=4.6e-23  Score=216.54  Aligned_cols=168  Identities=22%  Similarity=0.364  Sum_probs=145.2

Q ss_pred             cCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      .+|+..+.||.|+||.||+|.. .+++.||+|.+.....  ...+.+.+|+++++.++||||+++++++...+..|+|||
T Consensus        19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   96 (296)
T cd06655          19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQ--PKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVME   96 (296)
T ss_pred             ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccC--chHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEE
Confidence            4688889999999999999964 5789999999865432  335678899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+++++|.+++..     ..+++.++..++.|++.||+|||+.   +++||||||+||+++.++.+||+|||++..+...
T Consensus        97 ~~~~~~L~~~~~~-----~~l~~~~~~~i~~~l~~al~~LH~~---~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~  168 (296)
T cd06655          97 YLAGGSLTDVVTE-----TCMDEAQIAAVCRECLQALEFLHAN---QVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPE  168 (296)
T ss_pred             ecCCCcHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEccCccchhcccc
Confidence            9999999998864     3589999999999999999999987   8999999999999999999999999999876544


Q ss_pred             Cc-ceeecccceEEeccccc
Q 005587          668 SV-SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~-~~~~~~~~~~~apE~~~  686 (689)
                      .. .....++..|+|||.+.
T Consensus       169 ~~~~~~~~~~~~y~aPE~~~  188 (296)
T cd06655         169 QSKRSTMVGTPYWMAPEVVT  188 (296)
T ss_pred             cccCCCcCCCccccCcchhc
Confidence            32 22245677899999874

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.90  E-value=4.2e-23  Score=218.72  Aligned_cols=165  Identities=21%  Similarity=0.308  Sum_probs=132.2

Q ss_pred             cceEeecCCeEEEEEEeC---CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEe--CCeEEEEEec
Q 005587          514 ENLIGAGMLGSVYRAQLP---DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAE--HGQRLLIYEY  588 (689)
Q Consensus       514 ~~~iG~G~~G~Vy~~~~~---~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~--~~~~~lV~Ey  588 (689)
                      ..+||+|+||.||+|+..   ++..||+|.+.....    ...+.+|++++++++||||+++++++..  ....++||||
T Consensus         6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~----~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~   81 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGI----SMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDY   81 (317)
T ss_pred             ceEeccCCCeeEEEEEecCCCccceEEEEEecCCCC----cHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEee
Confidence            367999999999999764   457899999865422    3457789999999999999999998854  5678999999


Q ss_pred             cCCCCHHHHHhcCcc-----cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEe----cCCCcEEEEeec
Q 005587          589 CSNGTLQDMLHSDDE-----LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILL----DDDLAVSVSDCG  659 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~-----~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl----~~~~~~kl~DFG  659 (689)
                      +.+ +|.+++.....     ....+++..+..++.|++.||.|||+.   +|+||||||+|||+    +.++.+||+|||
T Consensus        82 ~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG  157 (317)
T cd07867          82 AEH-DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVKIADMG  157 (317)
T ss_pred             eCC-cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhC---CEEcCCCCHHHEEEccCCCCCCcEEEeecc
Confidence            864 88887753211     123588999999999999999999987   89999999999999    567789999999


Q ss_pred             CCccccCCCcc----eeecccceEEeccccc
Q 005587          660 LAPLISSGSVS----QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       660 la~~~~~~~~~----~~~~~~~~~~apE~~~  686 (689)
                      +++.+......    ....++..|+|||++.
T Consensus       158 ~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~  188 (317)
T cd07867         158 FARLFNSPLKPLADLDPVVVTFWYRAPELLL  188 (317)
T ss_pred             ceeccCCCcccccccCcceecccccCcHHhc
Confidence            99987543321    1234567899999874

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.90  E-value=5.2e-23  Score=211.64  Aligned_cols=170  Identities=24%  Similarity=0.392  Sum_probs=142.7

Q ss_pred             ccCCCccceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      .+.|++.+.||+|+||.||++...++..+|+|.+...   ......+.+|++++++++|+||+++++++.. ...+++||
T Consensus         5 ~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~v~e   80 (260)
T cd05073           5 RESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPG---SMSVEAFLAEANVMKTLQHDKLVKLHAVVTK-EPIYIITE   80 (260)
T ss_pred             ccceeEEeEecCccceEEEEEEecCCccEEEEecCCC---hhHHHHHHHHHHHHHhcCCCCcceEEEEEcC-CCeEEEEE
Confidence            3578889999999999999998877888999988643   2235678899999999999999999999887 77899999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+++|+|.+++....  ...+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++..+...
T Consensus        81 ~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~  155 (260)
T cd05073          81 FMAKGSLLDFLKSDE--GSKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGLARVIEDN  155 (260)
T ss_pred             eCCCCcHHHHHHhCC--ccccCHHHHHHHHHHHHHHHHHHHhC---CccccccCcceEEEcCCCcEEECCCcceeeccCC
Confidence            999999999997643  34578899999999999999999987   8999999999999999999999999999876544


Q ss_pred             Cccee--ecccceEEeccccc
Q 005587          668 SVSQV--SHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~~~~--~~~~~~~~apE~~~  686 (689)
                      .....  ......|+|||++.
T Consensus       156 ~~~~~~~~~~~~~y~~PE~~~  176 (260)
T cd05073         156 EYTAREGAKFPIKWTAPEAIN  176 (260)
T ss_pred             CcccccCCcccccccCHhHhc
Confidence            32221  12234599999874

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.90  E-value=4.7e-23  Score=210.94  Aligned_cols=168  Identities=22%  Similarity=0.391  Sum_probs=146.7

Q ss_pred             cCCCccceEeecCCeEEEEEEeCC-CcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~~-g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      ++|+..+.||+|+||.||+|...+ ++.|++|.+....    ...++.+|++++++++|+||+++++++......|++||
T Consensus         3 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~----~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e   78 (256)
T cd06612           3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEE----DLQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVME   78 (256)
T ss_pred             ccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHH----HHHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEe
Confidence            578889999999999999997764 8899999986532    25789999999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+.+++|.+++...   ...+++..+..++.|++.||.|||+.   +|+|+||+|+||++++++.+||+|||++..+...
T Consensus        79 ~~~~~~L~~~l~~~---~~~l~~~~~~~~~~~l~~~l~~lh~~---~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~  152 (256)
T cd06612          79 YCGAGSVSDIMKIT---NKTLTEEEIAAILYQTLKGLEYLHSN---KKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDT  152 (256)
T ss_pred             cCCCCcHHHHHHhC---ccCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEECCCCcEEEcccccchhcccC
Confidence            99999999998653   34689999999999999999999987   8999999999999999999999999999987654


Q ss_pred             C-cceeecccceEEeccccc
Q 005587          668 S-VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~-~~~~~~~~~~~~apE~~~  686 (689)
                      . ......++..|+|||++.
T Consensus       153 ~~~~~~~~~~~~y~~PE~~~  172 (256)
T cd06612         153 MAKRNTVIGTPFWMAPEVIQ  172 (256)
T ss_pred             ccccccccCCccccCHHHHh
Confidence            4 223344667899999863

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=6.8e-24  Score=241.03  Aligned_cols=175  Identities=26%  Similarity=0.406  Sum_probs=140.9

Q ss_pred             hhhccCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeC----
Q 005587          505 QQYTNSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEH----  579 (689)
Q Consensus       505 ~~~~~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~----  579 (689)
                      .++..+|+..++||+|+||.||+++.+ ||+.||||++.... +......+.+|+..+++|+|||||+++..|.+.    
T Consensus       475 SRY~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~-s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~~~~  553 (1351)
T KOG1035|consen  475 SRYLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKA-SDKLYSKILREVKLLARLNHPNVVRYYSAWVESTAEL  553 (1351)
T ss_pred             hhHhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCch-HHHHHHHHHHHHHHHhhcCCcceeeeehhhhccCCcc
Confidence            456778999999999999999999765 89999999998776 455567788999999999999999987521000    


Q ss_pred             --------------------------------------------------------------------------------
Q 005587          580 --------------------------------------------------------------------------------  579 (689)
Q Consensus       580 --------------------------------------------------------------------------------  579 (689)
                                                                                                      
T Consensus       554 ~~~ei~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~S~t  633 (1351)
T KOG1035|consen  554 TVLEIVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNLSNT  633 (1351)
T ss_pred             ccccccccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCcccccccccccccccc
Confidence                                                                                            


Q ss_pred             -----------------------------------CeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHH
Q 005587          580 -----------------------------------GQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARAL  624 (689)
Q Consensus       580 -----------------------------------~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL  624 (689)
                                                         -.+||-||||+.-.|.++++......   .-...++++++|++||
T Consensus       634 S~~e~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~~~~---~~d~~wrLFreIlEGL  710 (1351)
T KOG1035|consen  634 SDSEGSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNHFNS---QRDEAWRLFREILEGL  710 (1351)
T ss_pred             cccCCccccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhcccch---hhHHHHHHHHHHHHHH
Confidence                                               12578899999988888887532111   3577889999999999


Q ss_pred             HHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcccc----------------C---CCcceeecccceEEecccc
Q 005587          625 EYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS----------------S---GSVSQVSHNLTIMRAGGVT  685 (689)
Q Consensus       625 ~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~----------------~---~~~~~~~~~~~~~~apE~~  685 (689)
                      .|+|+.   +||||||||.||++|++..+||+|||+|+...                .   ........||..|+|||++
T Consensus       711 aYIH~~---giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll  787 (1351)
T KOG1035|consen  711 AYIHDQ---GIIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELL  787 (1351)
T ss_pred             HHHHhC---ceeeccCCcceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccccceeeeecHHHh
Confidence            999998   89999999999999999999999999999721                0   1112235677889999998


Q ss_pred             c
Q 005587          686 H  686 (689)
Q Consensus       686 ~  686 (689)
                      .
T Consensus       788 ~  788 (1351)
T KOG1035|consen  788 S  788 (1351)
T ss_pred             c
Confidence            4

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.90  E-value=4.3e-23  Score=211.57  Aligned_cols=165  Identities=25%  Similarity=0.323  Sum_probs=138.7

Q ss_pred             ceEeecCCeEEEEEEeCC--C--cEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccC
Q 005587          515 NLIGAGMLGSVYRAQLPD--G--KLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCS  590 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~~~--g--~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~  590 (689)
                      +.||+|+||.||+|.+.+  +  ..||||.+...... ...+.+.+|++.+++++||||+++++++.. ...++||||++
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~~   78 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLS-DIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPLMMVTELAP   78 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccH-HHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeEEEEEEecC
Confidence            468999999999997643  3  36999998765543 456788999999999999999999999988 88999999999


Q ss_pred             CCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCcc
Q 005587          591 NGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVS  670 (689)
Q Consensus       591 ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~  670 (689)
                      +|+|.+++.....  ..++|.....++.|+++||+|||+.   +++|+||||+||+++.++.+||+|||+++.+......
T Consensus        79 ~~~L~~~l~~~~~--~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~  153 (257)
T cd05040          79 LGSLLDRLRKDAL--GHFLISTLCDYAVQIANGMRYLESK---RFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDH  153 (257)
T ss_pred             CCcHHHHHHhccc--ccCcHHHHHHHHHHHHHHHHHHHhC---CccccccCcccEEEecCCEEEeccccccccccccccc
Confidence            9999999986432  4689999999999999999999987   8999999999999999999999999999987553221


Q ss_pred             e----eecccceEEeccccc
Q 005587          671 Q----VSHNLTIMRAGGVTH  686 (689)
Q Consensus       671 ~----~~~~~~~~~apE~~~  686 (689)
                      .    ...++..|+|||.+.
T Consensus       154 ~~~~~~~~~~~~y~~pE~~~  173 (257)
T cd05040         154 YVMEEHLKVPFAWCAPESLR  173 (257)
T ss_pred             eecccCCCCCceecCHHHhc
Confidence            1    123345799999864

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.90  E-value=2.5e-23  Score=216.15  Aligned_cols=168  Identities=21%  Similarity=0.340  Sum_probs=142.9

Q ss_pred             CCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          510 SFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      .|+..+.||+|+||.||+|.. .+++.||+|.+..... ......+.+|++++++++||||+++++++...+..|+||||
T Consensus         5 ~y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   83 (277)
T cd06642           5 LFTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEA-EDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEY   83 (277)
T ss_pred             HHHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccc-hHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEEc
Confidence            356678899999999999965 4678999999865432 23456788999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      +++++|.+++..     ..+++..+..++.|+++|+.|||+.   +++|+||+|+||++++++.++|+|||+++.+....
T Consensus        84 ~~~~~L~~~~~~-----~~~~~~~~~~~~~~i~~~l~~lH~~---~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~  155 (277)
T cd06642          84 LGGGSALDLLKP-----GPLEETYIATILREILKGLDYLHSE---RKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQ  155 (277)
T ss_pred             cCCCcHHHHhhc-----CCCCHHHHHHHHHHHHHHHHHHhcC---CeeccCCChheEEEeCCCCEEEccccccccccCcc
Confidence            999999998863     3578999999999999999999987   89999999999999999999999999998776543


Q ss_pred             cc-eeecccceEEeccccc
Q 005587          669 VS-QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       669 ~~-~~~~~~~~~~apE~~~  686 (689)
                      .. ....++.+|+|||.+.
T Consensus       156 ~~~~~~~~~~~y~aPE~~~  174 (277)
T cd06642         156 IKRNTFVGTPFWMAPEVIK  174 (277)
T ss_pred             hhhhcccCcccccCHHHhC
Confidence            22 1224567899999874

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.90  E-value=5.6e-23  Score=214.94  Aligned_cols=170  Identities=24%  Similarity=0.284  Sum_probs=142.7

Q ss_pred             CCCccceEeecCCeEEEEEEe----CCCcEEEEEEeccccC--ChhhHHHHHHHHHHHhcC-CCCCcceecEEEEeCCeE
Q 005587          510 SFSQENLIGAGMLGSVYRAQL----PDGKLLAVKKLDKRAS--SQQKDDEFLELVNNIDRI-RHANIVELKGYCAEHGQR  582 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~----~~g~~vAvK~l~~~~~--~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~~~~~  582 (689)
                      +|++.+.||+|+||.||+|+.    .+|+.||+|++.....  .....+.+.+|++++.++ +|+||+++++++...+..
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKL   80 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeE
Confidence            477789999999999999965    3689999999865322  122346678899999999 599999999999999999


Q ss_pred             EEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCc
Q 005587          583 LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAP  662 (689)
Q Consensus       583 ~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~  662 (689)
                      ++||||+++++|.+++...    ..+++..+..++.|+++||.|||+.   +++||||||+|||++.++.+||+|||+++
T Consensus        81 ~lv~e~~~~~~L~~~l~~~----~~l~~~~~~~~~~qi~~al~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~  153 (290)
T cd05613          81 HLILDYINGGELFTHLSQR----ERFKEQEVQIYSGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLSK  153 (290)
T ss_pred             EEEEecCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeEECCCCCEEEeeCccce
Confidence            9999999999999998752    4578899999999999999999987   89999999999999999999999999998


Q ss_pred             cccCCCcc--eeecccceEEeccccc
Q 005587          663 LISSGSVS--QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       663 ~~~~~~~~--~~~~~~~~~~apE~~~  686 (689)
                      .+......  ....++..|+|||.+.
T Consensus       154 ~~~~~~~~~~~~~~~~~~y~aPE~~~  179 (290)
T cd05613         154 EFHEDEVERAYSFCGTIEYMAPDIVR  179 (290)
T ss_pred             ecccccccccccccCCcccCChhhcc
Confidence            77553322  2234667799999874

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=1.2e-23  Score=225.41  Aligned_cols=165  Identities=25%  Similarity=0.317  Sum_probs=139.5

Q ss_pred             eEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccCCCCH
Q 005587          516 LIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTL  594 (689)
Q Consensus       516 ~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~ggsL  594 (689)
                      +||+|.||+||.|+.. +...+|||.+.....  +...-+.+|+...++++|.|||+++|.+.+.++.-|.||-++||+|
T Consensus       582 VLGKGTYG~VYA~RD~~tqvrIaIKEIpekds--r~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGGSL  659 (1226)
T KOG4279|consen  582 VLGKGTYGTVYAARDMDTQVRIAIKEIPEKDS--REVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGGSL  659 (1226)
T ss_pred             EeecCceeEEEeeccccceeEEEeeecccccc--hhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCCcH
Confidence            6999999999999754 466899999876542  3445678999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEec-CCCcEEEEeecCCccccC-CCccee
Q 005587          595 QDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLD-DDLAVSVSDCGLAPLISS-GSVSQV  672 (689)
Q Consensus       595 ~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~-~~~~~kl~DFGla~~~~~-~~~~~~  672 (689)
                      .++|+..-+. -.-.+.+.-.+.+||++||.|||..   .|||||||-+|||++ -.|.+||+|||-++.+.. ......
T Consensus       660 SsLLrskWGP-lKDNEstm~fYtkQILeGLkYLHen---~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAginP~TET  735 (1226)
T KOG4279|consen  660 SSLLRSKWGP-LKDNESTMNFYTKQILEGLKYLHEN---KIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGINPCTET  735 (1226)
T ss_pred             HHHHHhccCC-CccchhHHHHHHHHHHHHhhhhhhc---ceeeccccCCcEEEeeccceEEecccccchhhccCCccccc
Confidence            9999864321 1226777888999999999999998   799999999999997 588999999999988754 334455


Q ss_pred             ecccceEEeccccc
Q 005587          673 SHNLTIMRAGGVTH  686 (689)
Q Consensus       673 ~~~~~~~~apE~~~  686 (689)
                      -+||..|||||||.
T Consensus       736 FTGTLQYMAPEvID  749 (1226)
T KOG4279|consen  736 FTGTLQYMAPEVID  749 (1226)
T ss_pred             cccchhhhChHhhc
Confidence            67788899999995

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.90  E-value=8.9e-23  Score=215.24  Aligned_cols=148  Identities=22%  Similarity=0.335  Sum_probs=130.8

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCC-hhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASS-QQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      ++|+..+.||+|+||.||++... +++.||+|.+...... ......+.+|+++++.++||||+++++.+...++.++||
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (305)
T cd05609           1 EDFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVM   80 (305)
T ss_pred             CCceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEE
Confidence            36888899999999999999764 5789999998754321 233457889999999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcc
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPL  663 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~  663 (689)
                      ||++|++|.+++...    ..+++..+..++.|+++||.|||+.   +|+||||||+||+++.++.+||+|||+++.
T Consensus        81 e~~~g~~L~~~l~~~----~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~NIll~~~~~~~l~dfg~~~~  150 (305)
T cd05609          81 EYVEGGDCATLLKNI----GALPVDMARMYFAETVLALEYLHNY---GIVHRDLKPDNLLITSMGHIKLTDFGLSKI  150 (305)
T ss_pred             ecCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHEEECCCCCEEEeeCCCccc
Confidence            999999999999753    3588999999999999999999987   899999999999999999999999999874

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.90  E-value=3.7e-23  Score=215.42  Aligned_cols=171  Identities=20%  Similarity=0.344  Sum_probs=143.5

Q ss_pred             CCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      +|+..+.||+|+||.||+|+.. +|+.||||.+............+.+|++++++++||||+++++++...+..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF   80 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEeec
Confidence            4778899999999999999764 689999999875443333446788999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      +. ++|.+++....  ...+++..+..++.|+++||+|||+.   +++|+||+|+||++++++.+||+|||+++.+....
T Consensus        81 ~~-~~l~~~~~~~~--~~~l~~~~~~~~~~~i~~~l~~lh~~---~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~~  154 (284)
T cd07860          81 LH-QDLKKFMDASP--LSGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV  154 (284)
T ss_pred             cc-cCHHHHHHhCC--CCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEEeeccchhhcccCc
Confidence            95 68998887533  34689999999999999999999987   89999999999999999999999999998765432


Q ss_pred             cc-eeecccceEEeccccc
Q 005587          669 VS-QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       669 ~~-~~~~~~~~~~apE~~~  686 (689)
                      .. .....+..|+|||++.
T Consensus       155 ~~~~~~~~~~~y~aPE~~~  173 (284)
T cd07860         155 RTYTHEVVTLWYRAPEILL  173 (284)
T ss_pred             cccccccccccccCCeEEe
Confidence            21 2223466799999763

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.89  E-value=1.3e-24  Score=230.31  Aligned_cols=169  Identities=22%  Similarity=0.325  Sum_probs=143.4

Q ss_pred             cCCCccceEeecCCeEEEEEEeCC-CcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~~-g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      +.|.+...||.|+||.||+|..++ +-..|.|.+...  +....++|+-|+++|..+.||+||++++.|...+.+||+.|
T Consensus        32 d~WeIiGELGDGAFGKVyKA~nket~~lAAaKvIetk--seEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliE  109 (1187)
T KOG0579|consen   32 DHWEIIGELGDGAFGKVYKAVNKETKLLAAAKVIETK--SEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIE  109 (1187)
T ss_pred             HHHHHHhhhcCccchhhhhhhcccchhhhhhhhhccc--chhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEe
Confidence            345667789999999999997654 455677777543  24567889999999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC-
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS-  666 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~-  666 (689)
                      ||.||-...++-+.   ...+.+.++..+.+|++.||.|||+.   +|||||||..|||+.-+|.++|+|||.+..... 
T Consensus       110 FC~GGAVDaimlEL---~r~LtE~QIqvvc~q~ldALn~LHs~---~iIHRDLKAGNiL~TldGdirLADFGVSAKn~~t  183 (1187)
T KOG0579|consen  110 FCGGGAVDAIMLEL---GRVLTEDQIQVVCYQVLDALNWLHSQ---NIIHRDLKAGNILLTLDGDIRLADFGVSAKNKST  183 (1187)
T ss_pred             ecCCchHhHHHHHh---ccccchHHHHHHHHHHHHHHHHHhhc---chhhhhccccceEEEecCcEeeecccccccchhH
Confidence            99999998887754   46799999999999999999999998   899999999999999999999999998765543 


Q ss_pred             CCcceeecccceEEecccc
Q 005587          667 GSVSQVSHNLTIMRAGGVT  685 (689)
Q Consensus       667 ~~~~~~~~~~~~~~apE~~  685 (689)
                      ....-.-.||+|||||||.
T Consensus       184 ~qkRDsFIGTPYWMAPEVv  202 (1187)
T KOG0579|consen  184 RQKRDSFIGTPYWMAPEVV  202 (1187)
T ss_pred             HhhhccccCCcccccchhe
Confidence            2233335789999999997

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.89  E-value=7.8e-23  Score=210.16  Aligned_cols=170  Identities=20%  Similarity=0.360  Sum_probs=148.1

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      ++|++.+.||+|++|.||+|... +++.|+||++...... .....+.+|++.+.+++|+||+++++++...+..++|||
T Consensus         1 ~~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   79 (264)
T cd06623           1 SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDE-EFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLE   79 (264)
T ss_pred             CcceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcch-HHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEE
Confidence            36888899999999999999765 5999999998765432 456788999999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHh-CCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE-ICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~-~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      |+++++|.+++...    ..+++..+..++.|+++||.|||+ .   +++|+||+|+||+++.++.++|+|||++..+..
T Consensus        80 ~~~~~~L~~~l~~~----~~l~~~~~~~~~~~l~~~l~~lh~~~---~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~  152 (264)
T cd06623          80 YMDGGSLADLLKKV----GKIPEPVLAYIARQILKGLDYLHTKR---HIIHRDIKPSNLLINSKGEVKIADFGISKVLEN  152 (264)
T ss_pred             ecCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHhccC---CCccCCCCHHHEEECCCCCEEEccCccceeccc
Confidence            99999999999753    468999999999999999999998 7   899999999999999999999999999998765


Q ss_pred             CCcce-eecccceEEeccccc
Q 005587          667 GSVSQ-VSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 ~~~~~-~~~~~~~~~apE~~~  686 (689)
                      ..... ...+...|+|||++.
T Consensus       153 ~~~~~~~~~~~~~y~~pE~~~  173 (264)
T cd06623         153 TLDQCNTFVGTVTYMSPERIQ  173 (264)
T ss_pred             CCCcccceeecccccCHhhhC
Confidence            44332 345567899999863

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.89  E-value=4.3e-23  Score=214.38  Aligned_cols=165  Identities=27%  Similarity=0.307  Sum_probs=139.6

Q ss_pred             EeecCCeEEEEEEe-CCCcEEEEEEeccccCC-hhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccCCCCH
Q 005587          517 IGAGMLGSVYRAQL-PDGKLLAVKKLDKRASS-QQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTL  594 (689)
Q Consensus       517 iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~-~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~ggsL  594 (689)
                      ||+|+||.||+|.. .+|+.||+|.+...... ......+..|++++++++||||+++++++...+..|+||||+++++|
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDL   80 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcH
Confidence            68999999999965 46899999998654321 22345667899999999999999999999999999999999999999


Q ss_pred             HHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCcceeec
Q 005587          595 QDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSH  674 (689)
Q Consensus       595 ~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~  674 (689)
                      .+++....  ...+++..+..++.|++.||.|||+.   +++||||+|+||++++++.+||+|||++..+..........
T Consensus        81 ~~~l~~~~--~~~~~~~~~~~~~~ql~~~l~~lH~~---~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~  155 (277)
T cd05577          81 KYHIYNVG--EPGFPEARAIFYAAQIICGLEHLHQR---RIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKKIKGRA  155 (277)
T ss_pred             HHHHHHcC--cCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEEccCcchhhhccCCcccccc
Confidence            99987643  24689999999999999999999987   89999999999999999999999999998776544333345


Q ss_pred             ccceEEeccccc
Q 005587          675 NLTIMRAGGVTH  686 (689)
Q Consensus       675 ~~~~~~apE~~~  686 (689)
                      +...|++||++.
T Consensus       156 ~~~~y~~PE~~~  167 (277)
T cd05577         156 GTPGYMAPEVLQ  167 (277)
T ss_pred             CCCCcCCHHHhc
Confidence            567799999864

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.89  E-value=5.3e-23  Score=215.51  Aligned_cols=174  Identities=22%  Similarity=0.280  Sum_probs=141.3

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCC-CCCcceecEEEEeCCe-----
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR-HANIVELKGYCAEHGQ-----  581 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~-HpnIv~l~~~~~~~~~-----  581 (689)
                      ++|++.+.||+|+||.||+|... +++.||||.+............+.+|+.++++++ ||||+++++++...+.     
T Consensus         1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~   80 (295)
T cd07837           1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPS   80 (295)
T ss_pred             CCceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCce
Confidence            46888999999999999999764 6899999998654333334467888999999995 6999999999987665     


Q ss_pred             EEEEEeccCCCCHHHHHhcCccc-CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecC-CCcEEEEeec
Q 005587          582 RLLIYEYCSNGTLQDMLHSDDEL-KNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDD-DLAVSVSDCG  659 (689)
Q Consensus       582 ~~lV~Ey~~ggsL~~~l~~~~~~-~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~-~~~~kl~DFG  659 (689)
                      .|+||||+++ +|.+++...... ...+++..++.++.||++||.|||+.   +|+||||||+||+++. ++.+||+|||
T Consensus        81 ~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~---~i~H~dl~~~nil~~~~~~~~kl~dfg  156 (295)
T cd07837          81 LYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKH---GVMHRDLKPQNLLVDKQKGLLKIADLG  156 (295)
T ss_pred             EEEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChHHEEEecCCCeEEEeecc
Confidence            8999999985 898888654322 34689999999999999999999987   8999999999999998 8899999999


Q ss_pred             CCccccCCC-cceeecccceEEeccccc
Q 005587          660 LAPLISSGS-VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       660 la~~~~~~~-~~~~~~~~~~~~apE~~~  686 (689)
                      +++.+.... .......+..|+|||++.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~aPE~~~  184 (295)
T cd07837         157 LGRAFSIPVKSYTHEIVTLWYRAPEVLL  184 (295)
T ss_pred             cceecCCCccccCCcccccCCCChHHhh
Confidence            998664322 112234567799999763

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.89  E-value=6.9e-23  Score=212.37  Aligned_cols=174  Identities=22%  Similarity=0.331  Sum_probs=142.2

Q ss_pred             cCCCccceEeecCCeEEEEEEeC------CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP------DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQR  582 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~  582 (689)
                      ++|++...||+|+||.||+|+.+      +.+.|++|.+..... ......+.+|++++++++|+||+++++++...+..
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   83 (275)
T cd05046           5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKD-ENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEPH   83 (275)
T ss_pred             HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccc-hHHHHHHHHHHHHHHhcCCcceeeeEEEECCCCcc
Confidence            46788899999999999999754      246799998764322 22456789999999999999999999999999999


Q ss_pred             EEEEeccCCCCHHHHHhcCccc-----CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEe
Q 005587          583 LLIYEYCSNGTLQDMLHSDDEL-----KNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSD  657 (689)
Q Consensus       583 ~lV~Ey~~ggsL~~~l~~~~~~-----~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~D  657 (689)
                      ++||||+++|+|.+++......     ...+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.++|+|
T Consensus        84 ~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~---~i~H~dlkp~Nili~~~~~~~l~~  160 (275)
T cd05046          84 YMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNA---RFVHRDLAARNCLVSSQREVKVSL  160 (275)
T ss_pred             eEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhc---CcccCcCccceEEEeCCCcEEEcc
Confidence            9999999999999999764321     12589999999999999999999987   899999999999999999999999


Q ss_pred             ecCCccccCCCcc--eeecccceEEeccccc
Q 005587          658 CGLAPLISSGSVS--QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       658 FGla~~~~~~~~~--~~~~~~~~~~apE~~~  686 (689)
                      ||+++........  ....++..|++||.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~  191 (275)
T cd05046         161 LSLSKDVYNSEYYKLRNALIPLRWLAPEAVQ  191 (275)
T ss_pred             cccccccCcccccccCCceeEEeecChhhhc
Confidence            9998765332211  1123345699999864

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.89  E-value=9.3e-23  Score=209.94  Aligned_cols=173  Identities=24%  Similarity=0.361  Sum_probs=147.7

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      ++|++.+.||+|+||.||+|... ++..+|+|++....... ....+.+|++.++.++|+||+++++.+...+..++|||
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e   79 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQT-SVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMP   79 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcch-HHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEe
Confidence            46888999999999999999754 68899999987654333 56778999999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+++++|.+++..... ...+++..+..++.|++.||+|||+.   +|+||||||+||++++++.+||+|||++..+...
T Consensus        80 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~ql~~al~~lh~~---~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~  155 (267)
T cd06610          80 YLSGGSLLDIMKSSYP-RGGLDEAIIATVLKEVLKGLEYLHSN---GQIHRDIKAGNILLGEDGSVKIADFGVSASLADG  155 (267)
T ss_pred             ccCCCcHHHHHHHhcc-cCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHhEEEcCCCCEEEcccchHHHhccC
Confidence            9999999999975321 24589999999999999999999987   8999999999999999999999999999877654


Q ss_pred             Ccc-----eeecccceEEeccccc
Q 005587          668 SVS-----QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~~-----~~~~~~~~~~apE~~~  686 (689)
                      ...     ....++..|++||++.
T Consensus       156 ~~~~~~~~~~~~~~~~y~~Pe~~~  179 (267)
T cd06610         156 GDRTRKVRKTFVGTPCWMAPEVME  179 (267)
T ss_pred             ccccccccccccCChhhcChHHHc
Confidence            322     2234567799999874

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.89  E-value=6.8e-23  Score=214.40  Aligned_cols=171  Identities=22%  Similarity=0.281  Sum_probs=140.5

Q ss_pred             ccCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      +++|.+.+.||+|+||.||+|.. .+|+.||+|.+..... ......+.+|+++++.++|+||+++++++...+..++||
T Consensus         4 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~   82 (291)
T cd07870           4 ATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTE-EGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTFVF   82 (291)
T ss_pred             cceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCc-CCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEEEE
Confidence            46788999999999999999965 4689999999865432 223346678999999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      ||+. ++|.+.+...   ...+++..+..++.|++.||.|||+.   +|+|+||||+|||++.++.+||+|||+++....
T Consensus        83 e~~~-~~l~~~~~~~---~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~  155 (291)
T cd07870          83 EYMH-TDLAQYMIQH---PGGLHPYNVRLFMFQLLRGLAYIHGQ---HILHRDLKPQNLLISYLGELKLADFGLARAKSI  155 (291)
T ss_pred             eccc-CCHHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChHHEEEcCCCcEEEeccccccccCC
Confidence            9995 6777776542   23577888999999999999999987   899999999999999999999999999986543


Q ss_pred             CC-cceeecccceEEeccccc
Q 005587          667 GS-VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 ~~-~~~~~~~~~~~~apE~~~  686 (689)
                      .. ......++..|+|||.+.
T Consensus       156 ~~~~~~~~~~~~~y~aPE~~~  176 (291)
T cd07870         156 PSQTYSSEVVTLWYRPPDVLL  176 (291)
T ss_pred             CCCCCCCccccccccCCceee
Confidence            22 122234567899999873

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.89  E-value=8.3e-23  Score=209.65  Aligned_cols=163  Identities=24%  Similarity=0.323  Sum_probs=135.3

Q ss_pred             ceEeecCCeEEEEEEeCC----CcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccC
Q 005587          515 NLIGAGMLGSVYRAQLPD----GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCS  590 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~~~----g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~  590 (689)
                      ++||+|+||.||+|.+..    +..||+|.+...... ...+++.+|+++++++.|+||+++++++.. +..++||||++
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~~   78 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIA-AGKKEFLREASVMAQLDHPCIVRLIGVCKG-EPLMLVMELAP   78 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccch-HHHHHHHHHHHHHHhcCCCCeeeEEEEEcC-CceEEEEEeCC
Confidence            468999999999996432    268999998765432 456788999999999999999999998764 56899999999


Q ss_pred             CCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCcc
Q 005587          591 NGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVS  670 (689)
Q Consensus       591 ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~  670 (689)
                      +|+|.+++...    ..+++..++.++.|++.||.|||..   +++|+||||+|||++.++.+||+|||+++.+......
T Consensus        79 ~~~L~~~l~~~----~~~~~~~~~~~~~qi~~~l~~lh~~---~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~  151 (257)
T cd05060          79 LGPLLKYLKKR----REIPVSDLKELAHQVAMGMAYLESK---HFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDY  151 (257)
T ss_pred             CCcHHHHHHhC----CCCCHHHHHHHHHHHHHHHHHHhhc---CeeccCcccceEEEcCCCcEEeccccccceeecCCcc
Confidence            99999999763    3688999999999999999999987   8999999999999999999999999999987554432


Q ss_pred             eeec----ccceEEeccccc
Q 005587          671 QVSH----NLTIMRAGGVTH  686 (689)
Q Consensus       671 ~~~~----~~~~~~apE~~~  686 (689)
                      ....    .+..|+|||.+.
T Consensus       152 ~~~~~~~~~~~~y~aPE~~~  171 (257)
T cd05060         152 YRATTAGRWPLKWYAPECIN  171 (257)
T ss_pred             cccccCccccccccCHHHhc
Confidence            2111    123699999874

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=1.1e-22  Score=209.85  Aligned_cols=171  Identities=25%  Similarity=0.331  Sum_probs=141.7

Q ss_pred             cCCCccceEeecCCeEEEEEEe-CCCcEEEEEEecccc---CChhhHHHHHHHHHHHhcCCCCCcceecEEEEeC--CeE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRA---SSQQKDDEFLELVNNIDRIRHANIVELKGYCAEH--GQR  582 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~--~~~  582 (689)
                      .+|++.+.||+|+||.||+|.. .+++.||+|.+....   ........+.+|++++++++|+||+++++++...  +..
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKL   81 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEE
Confidence            4688899999999999999965 468999999875432   1223456788999999999999999999998764  468


Q ss_pred             EEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCc
Q 005587          583 LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAP  662 (689)
Q Consensus       583 ~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~  662 (689)
                      ++||||+++++|.+++...    ..+++...++++.|++.||.|||+.   +|+|+||||+||+++.++.++|+|||+++
T Consensus        82 ~~v~e~~~~~~L~~~~~~~----~~l~~~~~~~~~~~i~~al~~LH~~---~i~H~dl~p~ni~i~~~~~~~l~dfg~~~  154 (264)
T cd06653          82 SIFVEYMPGGSIKDQLKAY----GALTENVTRRYTRQILQGVSYLHSN---MIVHRDIKGANILRDSAGNVKLGDFGASK  154 (264)
T ss_pred             EEEEEeCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCEEECcccccc
Confidence            8999999999999998752    3578899999999999999999987   89999999999999999999999999998


Q ss_pred             cccCCC----cceeecccceEEeccccc
Q 005587          663 LISSGS----VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       663 ~~~~~~----~~~~~~~~~~~~apE~~~  686 (689)
                      ......    ......++..|+|||.+.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~  182 (264)
T cd06653         155 RIQTICMSGTGIKSVTGTPYWMSPEVIS  182 (264)
T ss_pred             ccccccccCccccccCCcccccCHhhhc
Confidence            764321    112234667899999874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.89  E-value=8.7e-23  Score=213.30  Aligned_cols=173  Identities=20%  Similarity=0.314  Sum_probs=144.5

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEe--CCeEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAE--HGQRLLI  585 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~--~~~~~lV  585 (689)
                      ++|+..+.||.|++|.||+|... +++.+|+|.+..... ......+.+|++++++++||||++++++|..  .+..++|
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv   79 (287)
T cd06621           1 EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPN-PDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIA   79 (287)
T ss_pred             CceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCc-hHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEE
Confidence            35778899999999999999764 688999999875432 2446778999999999999999999999865  3478999


Q ss_pred             EeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcccc
Q 005587          586 YEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS  665 (689)
Q Consensus       586 ~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~  665 (689)
                      |||+++++|.+++.........+++.....++.|+++||.|||+.   +++|+||+|+||++++++.++|+|||++....
T Consensus        80 ~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~---~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~  156 (287)
T cd06621          80 MEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSR---KIIHRDIKPSNILLTRKGQVKLCDFGVSGELV  156 (287)
T ss_pred             EEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEecCCeEEEeecccccccc
Confidence            999999999998765333345688899999999999999999987   89999999999999999999999999998765


Q ss_pred             CCCcceeecccceEEeccccc
Q 005587          666 SGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       666 ~~~~~~~~~~~~~~~apE~~~  686 (689)
                      ..... ...++..|+|||.+.
T Consensus       157 ~~~~~-~~~~~~~y~~pE~~~  176 (287)
T cd06621         157 NSLAG-TFTGTSFYMAPERIQ  176 (287)
T ss_pred             ccccc-cccCCccccCHHHhc
Confidence            43322 245677899999763

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.89  E-value=4.9e-23  Score=210.61  Aligned_cols=173  Identities=24%  Similarity=0.380  Sum_probs=149.4

Q ss_pred             CCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          510 SFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      +|++.+.||+|+||.||++.. .+++.+|+|.+............+.+|++++++++|+||+++++++......++||||
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   80 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEY   80 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEehh
Confidence            477889999999999999964 4788999999876554445567788999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      +++++|.+++.........+++..+..++.|+++||.|||+.   +++|+||+|+||++++++.+||+|||+++......
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~---~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~~  157 (256)
T cd08530          81 APFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQ---KILHRDLKSANILLVANDLVKIGDLGISKVLKKNM  157 (256)
T ss_pred             cCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCcceEEEecCCcEEEeeccchhhhccCC
Confidence            999999999876433345789999999999999999999987   89999999999999999999999999999886653


Q ss_pred             cceeecccceEEeccccc
Q 005587          669 VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       669 ~~~~~~~~~~~~apE~~~  686 (689)
                       .....++..|++||.+.
T Consensus       158 -~~~~~~~~~~~~Pe~~~  174 (256)
T cd08530         158 -AKTQIGTPHYMAPEVWK  174 (256)
T ss_pred             -cccccCCccccCHHHHC
Confidence             23345677899999873

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.89  E-value=1e-23  Score=202.30  Aligned_cols=176  Identities=27%  Similarity=0.326  Sum_probs=147.4

Q ss_pred             ccCCCccceEeecCCeEEEEEE-eCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeC-----Ce
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEH-----GQ  581 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~-----~~  581 (689)
                      .++|.+.+.+|+|+|+-||.++ ..+++.+|+|++....  .++.+..++|++..++++||||++++++....     .+
T Consensus        20 ~~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~--~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~   97 (302)
T KOG2345|consen   20 NKRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHS--QEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHE   97 (302)
T ss_pred             CceEEEeeeecCCCceeeeeecccCcccchhhheeeccc--hHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCcee
Confidence            4678999999999999999996 6789999999987654  45677889999999999999999999887543     35


Q ss_pred             EEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCC
Q 005587          582 RLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA  661 (689)
Q Consensus       582 ~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla  661 (689)
                      .||+++|...|+|.+.+.........+++.+.++|+.+|++||++||+. .++..||||||.|||+.+.+.++|.|||-+
T Consensus        98 ~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~-~~~yAH~DiKP~NILls~~~~~vl~D~GS~  176 (302)
T KOG2345|consen   98 AYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEK-EPPYAHRDIKPANILLSDSGLPVLMDLGSA  176 (302)
T ss_pred             EEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhcc-CCcccccCCCcceeEecCCCceEEEeccCc
Confidence            8999999999999999987655556799999999999999999999997 346999999999999999999999999998


Q ss_pred             ccccCCCcc----------eeecccceEEeccccc
Q 005587          662 PLISSGSVS----------QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       662 ~~~~~~~~~----------~~~~~~~~~~apE~~~  686 (689)
                      ....-.-.+          ....=+..|+|||.++
T Consensus       177 ~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~  211 (302)
T KOG2345|consen  177 TQAPIQIEGSRQALRLQEWAEERCTIPYRAPELFN  211 (302)
T ss_pred             cccceEeechHHHHHHHHHHHHhCCCcccCchhee
Confidence            765321110          1122356799999984

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.89  E-value=8.4e-24  Score=216.44  Aligned_cols=172  Identities=23%  Similarity=0.352  Sum_probs=143.2

Q ss_pred             cCCCccceEeecCCeEEEEE-EeCCCcEEEEEEeccccCChhh-----HHHHHHHHHHHhcCCCCCcceecEEEEe-CCe
Q 005587          509 NSFSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQK-----DDEFLELVNNIDRIRHANIVELKGYCAE-HGQ  581 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~-~~~~g~~vAvK~l~~~~~~~~~-----~~~~~~e~~~l~~l~HpnIv~l~~~~~~-~~~  581 (689)
                      ++|-...+||+|+|+.||+| .+...+.||||+-.........     -+...+|.++.+.|.||.||++|+|+.- .+.
T Consensus       463 ~RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtds  542 (775)
T KOG1151|consen  463 DRYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDS  542 (775)
T ss_pred             HHHHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeecccc
Confidence            35667788999999999999 5667889999986544332222     1345688999999999999999999974 567


Q ss_pred             EEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEec---CCCcEEEEee
Q 005587          582 RLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLD---DDLAVSVSDC  658 (689)
Q Consensus       582 ~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~---~~~~~kl~DF  658 (689)
                      .+-|+|||+|.+|.-+|+..    +.+++.++..|+.||..||.||.+. .++|||-||||.|||+.   ..|.+||+||
T Consensus       543 FCTVLEYceGNDLDFYLKQh----klmSEKEARSIiMQiVnAL~YLNEi-kpPIIHYDLKPgNILLv~GtacGeIKITDF  617 (775)
T KOG1151|consen  543 FCTVLEYCEGNDLDFYLKQH----KLMSEKEARSIIMQIVNALKYLNEI-KPPIIHYDLKPGNILLVNGTACGEIKITDF  617 (775)
T ss_pred             ceeeeeecCCCchhHHHHhh----hhhhHHHHHHHHHHHHHHHHHHhcc-CCCeeeeccCCccEEEecCcccceeEeeec
Confidence            88999999999999999874    4688999999999999999999987 57899999999999995   4688999999


Q ss_pred             cCCccccCCCcc--------eeecccceEEecccc
Q 005587          659 GLAPLISSGSVS--------QVSHNLTIMRAGGVT  685 (689)
Q Consensus       659 Gla~~~~~~~~~--------~~~~~~~~~~apE~~  685 (689)
                      ||++++...+..        ..-.+|.+|..||.+
T Consensus       618 GLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcF  652 (775)
T KOG1151|consen  618 GLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECF  652 (775)
T ss_pred             chhhhccCCccCcccceeeecccCceeeecCccee
Confidence            999999876544        334577789999987

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=6.6e-23  Score=212.49  Aligned_cols=169  Identities=25%  Similarity=0.371  Sum_probs=145.8

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      ++|+..+.||.|+||.||+|... +++.||+|.+..... ......+.+|+++++.++|+||+++++++......++|+|
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   79 (274)
T cd06609           1 ELFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEA-EDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIME   79 (274)
T ss_pred             ChhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeecccc-chHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEE
Confidence            35778889999999999999754 689999999865432 3345678899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+++++|.+++...     .+++..+..++.|++.||.|||+.   +++|+||+|+||++++++.++|+|||+++.+...
T Consensus        80 ~~~~~~L~~~~~~~-----~~~~~~~~~~~~ql~~~l~~lh~~---~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~  151 (274)
T cd06609          80 YCGGGSCLDLLKPG-----KLDETYIAFILREVLLGLEYLHEE---GKIHRDIKAANILLSEEGDVKLADFGVSGQLTST  151 (274)
T ss_pred             eeCCCcHHHHHhhc-----CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEEcccccceeeccc
Confidence            99999999998752     689999999999999999999987   8999999999999999999999999999888654


Q ss_pred             C-cceeecccceEEeccccc
Q 005587          668 S-VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~-~~~~~~~~~~~~apE~~~  686 (689)
                      . ......++..|+|||.+.
T Consensus       152 ~~~~~~~~~~~~y~~PE~~~  171 (274)
T cd06609         152 MSKRNTFVGTPFWMAPEVIK  171 (274)
T ss_pred             ccccccccCCccccChhhhc
Confidence            2 222345567799999874

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.89  E-value=6.4e-23  Score=213.57  Aligned_cols=163  Identities=28%  Similarity=0.245  Sum_probs=132.6

Q ss_pred             eEeecCCeEEEEEEeC-CCcEEEEEEeccccCCh-hhHHHHHHHHH---HHhcCCCCCcceecEEEEeCCeEEEEEeccC
Q 005587          516 LIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQ-QKDDEFLELVN---NIDRIRHANIVELKGYCAEHGQRLLIYEYCS  590 (689)
Q Consensus       516 ~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~-~~~~~~~~e~~---~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~  590 (689)
                      +||+|+||.||++... +++.+|+|.+....... .....+.+|..   .+...+||||+.+++++...+..++||||++
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   80 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMN   80 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCC
Confidence            4899999999999764 68999999987543322 22233344443   3344579999999999999999999999999


Q ss_pred             CCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCcc
Q 005587          591 NGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVS  670 (689)
Q Consensus       591 ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~  670 (689)
                      +|+|.+++...    ..+++..+..|+.|++.||+|||+.   +|+||||||+|||+++++.++|+|||++........ 
T Consensus        81 ~~~L~~~i~~~----~~l~~~~~~~i~~qi~~al~~lH~~---~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~~~-  152 (279)
T cd05633          81 GGDLHYHLSQH----GVFSEKEMRFYATEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKP-  152 (279)
T ss_pred             CCCHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CcCCCCCCHHHEEECCCCCEEEccCCcceeccccCc-
Confidence            99999988753    4689999999999999999999987   899999999999999999999999999986654332 


Q ss_pred             eeecccceEEeccccc
Q 005587          671 QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       671 ~~~~~~~~~~apE~~~  686 (689)
                      ....++..|+|||++.
T Consensus       153 ~~~~~~~~y~aPE~~~  168 (279)
T cd05633         153 HASVGTHGYMAPEVLQ  168 (279)
T ss_pred             cCcCCCcCccCHHHhc
Confidence            2345778899999863

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.89  E-value=1e-22  Score=211.56  Aligned_cols=169  Identities=20%  Similarity=0.335  Sum_probs=144.2

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      ..|+..+.||+|+||.||+|... ++..||+|.+..... ......+.+|+.++++++||||+++++++...+..++|||
T Consensus         4 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (277)
T cd06640           4 ELFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEA-EDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIME   82 (277)
T ss_pred             HhhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEecccc-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEe
Confidence            34677788999999999999764 688999999865432 3445778899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+++|+|.+++..     ..+++.....++.|++.||+|||+.   +++|+||+|+||+++.++.++|+|||++..+...
T Consensus        83 ~~~~~~L~~~i~~-----~~l~~~~~~~~~~~l~~~l~~lh~~---~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~  154 (277)
T cd06640          83 YLGGGSALDLLRA-----GPFDEFQIATMLKEILKGLDYLHSE---KKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDT  154 (277)
T ss_pred             cCCCCcHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHhC---CccCcCCChhhEEEcCCCCEEEcccccceeccCC
Confidence            9999999999864     3578899999999999999999987   8999999999999999999999999999876543


Q ss_pred             Ccc-eeecccceEEeccccc
Q 005587          668 SVS-QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~~-~~~~~~~~~~apE~~~  686 (689)
                      ... ....++.+|+|||++.
T Consensus       155 ~~~~~~~~~~~~y~apE~~~  174 (277)
T cd06640         155 QIKRNTFVGTPFWMAPEVIQ  174 (277)
T ss_pred             ccccccccCcccccCHhHhc
Confidence            322 2234567899999874

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.89  E-value=1.2e-22  Score=207.44  Aligned_cols=174  Identities=24%  Similarity=0.403  Sum_probs=150.2

Q ss_pred             CCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      +|++.+.||+|+||.||++... +++.||+|++............+.+|+++++.++|+|++++++.+...+..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e~   80 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEY   80 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEEe
Confidence            4777899999999999999764 689999999976655445667889999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      +++++|.+++.........+++..+..++.++++||.|||+.   +++|+||+|+||++++++.++|+|||++.......
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~---~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~  157 (258)
T cd08215          81 ADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSR---KILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTV  157 (258)
T ss_pred             cCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHHeEEcCCCcEEECCccceeecccCc
Confidence            999999999986432236789999999999999999999987   89999999999999999999999999998876554


Q ss_pred             -cceeecccceEEeccccc
Q 005587          669 -VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       669 -~~~~~~~~~~~~apE~~~  686 (689)
                       ......++..|+|||...
T Consensus       158 ~~~~~~~~~~~y~~pe~~~  176 (258)
T cd08215         158 DLAKTVVGTPYYLSPELCQ  176 (258)
T ss_pred             ceecceeeeecccChhHhc
Confidence             223345667799999763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.89  E-value=1.4e-23  Score=203.63  Aligned_cols=170  Identities=21%  Similarity=0.351  Sum_probs=141.4

Q ss_pred             CCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCC-CCCcceecEEEEeCCeEEEEEe
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR-HANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~-HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      +.+....||.|+.|+|++++++ +|..+|||.+.+... ....++++..+.++.+.+ .|.||+.+|||..+..+++.||
T Consensus        93 dl~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~N-kee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~IcMe  171 (391)
T KOG0983|consen   93 DLENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGN-KEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFICME  171 (391)
T ss_pred             HhhhHHhhcCCCccceEEEEEcccceEEEEEeecccCC-HHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHHHH
Confidence            3445667999999999999664 689999999987643 344556666677666554 8999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      .|.- -+..+++.   ...++++...-++...+.+||.||.+.+  +|||||+||+|||+|+.|++|+||||++.++.+.
T Consensus       172 lMs~-C~ekLlkr---ik~piPE~ilGk~tva~v~AL~YLKeKH--~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdS  245 (391)
T KOG0983|consen  172 LMST-CAEKLLKR---IKGPIPERILGKMTVAIVKALYYLKEKH--GVIHRDVKPSNILLDERGNIKLCDFGISGRLVDS  245 (391)
T ss_pred             HHHH-HHHHHHHH---hcCCchHHhhhhhHHHHHHHHHHHHHhc--ceeecccCccceEEccCCCEEeecccccceeecc
Confidence            9842 34444443   2457888888899999999999999885  8999999999999999999999999999999888


Q ss_pred             CcceeecccceEEeccccc
Q 005587          668 SVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~~~~~~~~~~~~apE~~~  686 (689)
                      .....+.+-..|||||-+.
T Consensus       246 kAhtrsAGC~~YMaPERid  264 (391)
T KOG0983|consen  246 KAHTRSAGCAAYMAPERID  264 (391)
T ss_pred             cccccccCCccccCccccC
Confidence            8777788899999999873

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.89  E-value=7.2e-23  Score=220.65  Aligned_cols=170  Identities=21%  Similarity=0.263  Sum_probs=142.6

Q ss_pred             hccCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeC------
Q 005587          507 YTNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEH------  579 (689)
Q Consensus       507 ~~~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~------  579 (689)
                      ..+.|+..+.||+|+||.||+|.. .+|+.||||.+............+.+|+.++++++||||+++++++...      
T Consensus        14 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   93 (353)
T cd07850          14 VLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEF   93 (353)
T ss_pred             hhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCcccc
Confidence            346799999999999999999965 4789999999875443344456778899999999999999999988643      


Q ss_pred             CeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeec
Q 005587          580 GQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCG  659 (689)
Q Consensus       580 ~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG  659 (689)
                      ...|+||||+. ++|.+.+..      .+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||
T Consensus        94 ~~~~lv~e~~~-~~l~~~~~~------~l~~~~~~~~~~ql~~aL~~LH~~---gi~H~dlkp~Nil~~~~~~~kL~Dfg  163 (353)
T cd07850          94 QDVYLVMELMD-ANLCQVIQM------DLDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFG  163 (353)
T ss_pred             CcEEEEEeccC-CCHHHHHhh------cCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEccCc
Confidence            35799999996 588888753      278889999999999999999987   89999999999999999999999999


Q ss_pred             CCccccCCCcceeecccceEEeccccc
Q 005587          660 LAPLISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       660 la~~~~~~~~~~~~~~~~~~~apE~~~  686 (689)
                      +++............++..|+|||.+.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~y~aPE~~~  190 (353)
T cd07850         164 LARTAGTSFMMTPYVVTRYYRAPEVIL  190 (353)
T ss_pred             cceeCCCCCCCCCCcccccccCHHHHh
Confidence            999876554433345667899999874

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.89  E-value=1.1e-22  Score=207.72  Aligned_cols=165  Identities=25%  Similarity=0.405  Sum_probs=138.9

Q ss_pred             ceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccCCCCH
Q 005587          515 NLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTL  594 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~ggsL  594 (689)
                      ++||+|+||.||+|...+++.||+|.+...... .....+.+|++++++++|+||+++++++...+..++||||+.+++|
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l   79 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPP-DLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSL   79 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCCH-HHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCcH
Confidence            368999999999998766999999998765432 3456789999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCccee--
Q 005587          595 QDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQV--  672 (689)
Q Consensus       595 ~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~~--  672 (689)
                      .+++....   ..+++..++.++.++++||.|||+.   +++||||||+||+++.++.+||+|||+++....+.....  
T Consensus        80 ~~~l~~~~---~~~~~~~~~~~~~~~~~~l~~lH~~---~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~  153 (251)
T cd05041          80 LTFLRKKK---NRLTVKKLLQMSLDAAAGMEYLESK---NCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDG  153 (251)
T ss_pred             HHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHHhC---CEehhhcCcceEEEcCCCcEEEeeccccccccCCcceeccc
Confidence            99987532   3578899999999999999999987   899999999999999999999999999987654332211  


Q ss_pred             -ecccceEEeccccc
Q 005587          673 -SHNLTIMRAGGVTH  686 (689)
Q Consensus       673 -~~~~~~~~apE~~~  686 (689)
                       ......|+|||.+.
T Consensus       154 ~~~~~~~y~~PE~~~  168 (251)
T cd05041         154 LKQIPIKWTAPEALN  168 (251)
T ss_pred             cCcceeccCChHhhc
Confidence             11133499999863

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.89  E-value=1.2e-23  Score=196.40  Aligned_cols=173  Identities=19%  Similarity=0.285  Sum_probs=142.5

Q ss_pred             CCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHh-cCCCCCcceecEEEEeCCeEEEEEe
Q 005587          510 SFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNID-RIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~-~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      ...-.+.||+|+||.|-+-++ .+|...|+|++..... .+...+.+.|+.+.. ...+|.+|++||.+...+..|+.||
T Consensus        47 ~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn-~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdvwIcME  125 (282)
T KOG0984|consen   47 DLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVN-SQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDVWICME  125 (282)
T ss_pred             hhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcC-hHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccEEEeHH
Confidence            344457799999999988854 5799999999976544 345566777777654 4579999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      .|.- ||..+.++--.....+++...=+|+..|.+||.|||++  ..|||||+||+|||++.+|++||||||++..+.+.
T Consensus       126 ~M~t-Sldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~k--L~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~dS  202 (282)
T KOG0984|consen  126 LMDT-SLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSK--LSVIHRDVKPSNILINYDGQVKICDFGISGYLVDS  202 (282)
T ss_pred             Hhhh-hHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHH--hhhhhccCCcceEEEccCCcEEEcccccceeehhh
Confidence            9954 88777654333356789999999999999999999987  47999999999999999999999999999988765


Q ss_pred             CcceeecccceEEeccccc
Q 005587          668 SVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~~~~~~~~~~~~apE~~~  686 (689)
                      -......+-..|||||.+.
T Consensus       203 iAkt~daGCkpYmaPEri~  221 (282)
T KOG0984|consen  203 IAKTMDAGCKPYMAPERIN  221 (282)
T ss_pred             hHHHHhcCCCccCChhhcC
Confidence            5444456778899999984

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.89  E-value=8.6e-23  Score=212.55  Aligned_cols=173  Identities=24%  Similarity=0.367  Sum_probs=142.0

Q ss_pred             cCCCccceEeecCCeEEEEEEeC------CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP------DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQR  582 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~  582 (689)
                      .+|+..+.||+|+||.||++...      ++..+|+|.+....  ......+.+|++++++++|+||+++++++...+..
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   82 (280)
T cd05092           5 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEAS--ESARQDFQREAELLTVLQHQHIVRFYGVCTEGRPL   82 (280)
T ss_pred             HhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCC--HHHHHHHHHHHHHHhcCCCCCCceEEEEEecCCce
Confidence            45677889999999999999532      35689999876432  34566899999999999999999999999999999


Q ss_pred             EEEEeccCCCCHHHHHhcCccc-----------CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCC
Q 005587          583 LLIYEYCSNGTLQDMLHSDDEL-----------KNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDL  651 (689)
Q Consensus       583 ~lV~Ey~~ggsL~~~l~~~~~~-----------~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~  651 (689)
                      ++||||+++|+|.+++......           ...+++..++.++.|++.||+|||+.   +|+||||||+|||+++++
T Consensus        83 ~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~nil~~~~~  159 (280)
T cd05092          83 LMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASL---HFVHRDLATRNCLVGQGL  159 (280)
T ss_pred             EEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHC---CeecccccHhhEEEcCCC
Confidence            9999999999999999754310           13588999999999999999999987   899999999999999999


Q ss_pred             cEEEEeecCCccccCCCcce---eecccceEEeccccc
Q 005587          652 AVSVSDCGLAPLISSGSVSQ---VSHNLTIMRAGGVTH  686 (689)
Q Consensus       652 ~~kl~DFGla~~~~~~~~~~---~~~~~~~~~apE~~~  686 (689)
                      .+||+|||+++.+.......   ....+..|+|||.+.
T Consensus       160 ~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  197 (280)
T cd05092         160 VVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESIL  197 (280)
T ss_pred             CEEECCCCceeEcCCCceeecCCCccccccccCHHHhc
Confidence            99999999998664433211   112235699999874

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.89  E-value=9e-23  Score=211.01  Aligned_cols=170  Identities=24%  Similarity=0.336  Sum_probs=139.4

Q ss_pred             cCCCccceEeecCCeEEEEEEeCC----CcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPD----GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLL  584 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~~----g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~l  584 (689)
                      ++|.+.+.||+|+||.||+|...+    ...||||....... ....+.+.+|+.++++++||||+++++++.. +..++
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~-~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~~l   83 (270)
T cd05056           6 EDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTS-PSVREKFLQEAYIMRQFDHPHIVKLIGVITE-NPVWI   83 (270)
T ss_pred             hhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCC-HHHHHHHHHHHHHHHhCCCCchhceeEEEcC-CCcEE
Confidence            457788999999999999997543    24689998764432 3455688999999999999999999998875 45789


Q ss_pred             EEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccc
Q 005587          585 IYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI  664 (689)
Q Consensus       585 V~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~  664 (689)
                      ||||+++|+|.+++...   ...+++..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+++.+
T Consensus        84 v~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~~l~~~l~~lH~~---~~~H~dl~p~nili~~~~~~~l~d~g~~~~~  157 (270)
T cd05056          84 VMELAPLGELRSYLQVN---KYSLDLASLILYSYQLSTALAYLESK---RFVHRDIAARNVLVSSPDCVKLGDFGLSRYL  157 (270)
T ss_pred             EEEcCCCCcHHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccccChheEEEecCCCeEEccCceeeec
Confidence            99999999999999753   23589999999999999999999987   8999999999999999999999999999877


Q ss_pred             cCCCcceee--cccceEEeccccc
Q 005587          665 SSGSVSQVS--HNLTIMRAGGVTH  686 (689)
Q Consensus       665 ~~~~~~~~~--~~~~~~~apE~~~  686 (689)
                      .........  .....|+|||.+.
T Consensus       158 ~~~~~~~~~~~~~~~~y~aPE~~~  181 (270)
T cd05056         158 EDESYYKASKGKLPIKWMAPESIN  181 (270)
T ss_pred             ccccceecCCCCccccccChhhhc
Confidence            554322211  1224699999763

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.89  E-value=7.2e-23  Score=216.29  Aligned_cols=172  Identities=30%  Similarity=0.402  Sum_probs=141.6

Q ss_pred             ccCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeC--CeEEE
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEH--GQRLL  584 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~--~~~~l  584 (689)
                      .++|++.+.||+|+||.||+|.. .+|+.||+|.+............+.+|++++++++|+||+++++++...  +..++
T Consensus         6 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   85 (309)
T cd07845           6 VTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIFL   85 (309)
T ss_pred             ccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEEE
Confidence            35788999999999999999976 4689999999875433223334567899999999999999999998765  56899


Q ss_pred             EEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccc
Q 005587          585 IYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI  664 (689)
Q Consensus       585 V~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~  664 (689)
                      ||||+.+ +|.+++...   ...+++..+..++.|+++||.|||+.   +++||||||+||++++++.+||+|||+++.+
T Consensus        86 v~e~~~~-~l~~~l~~~---~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~kL~dfg~~~~~  158 (309)
T cd07845          86 VMEYCEQ-DLASLLDNM---PTPFSESQVKCLMLQLLRGLQYLHEN---FIIHRDLKVSNLLLTDKGCLKIADFGLARTY  158 (309)
T ss_pred             EEecCCC-CHHHHHHhc---ccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEECccceeeec
Confidence            9999964 888888653   24689999999999999999999997   8999999999999999999999999999987


Q ss_pred             cCCCcc-eeecccceEEeccccc
Q 005587          665 SSGSVS-QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       665 ~~~~~~-~~~~~~~~~~apE~~~  686 (689)
                      ...... .....+..|+|||++.
T Consensus       159 ~~~~~~~~~~~~~~~y~aPE~~~  181 (309)
T cd07845         159 GLPAKPMTPKVVTLWYRAPELLL  181 (309)
T ss_pred             CCccCCCCcccccccccChhhhc
Confidence            654221 1223456799999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.89  E-value=1.4e-22  Score=210.59  Aligned_cols=168  Identities=21%  Similarity=0.346  Sum_probs=143.0

Q ss_pred             CCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          510 SFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      -|+..+.||+|+||.||+|.. .+++.||||.+..... ......+.+|++++.+++||||+++++++...+..++||||
T Consensus         5 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   83 (277)
T cd06641           5 LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEA-EDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEY   83 (277)
T ss_pred             hhhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccc-hHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEe
Confidence            466778999999999999965 4688999998865432 23456788999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      +++++|.+++..     ..+++..+..++.|++.|+.|||+.   +++|+||||+||+++.++.++|+|||++..+....
T Consensus        84 ~~~~~l~~~i~~-----~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~  155 (277)
T cd06641          84 LGGGSALDLLEP-----GPLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQ  155 (277)
T ss_pred             CCCCcHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHccC---CeecCCCCHHhEEECCCCCEEEeecccceecccch
Confidence            999999999863     3588999999999999999999987   89999999999999999999999999998765533


Q ss_pred             cc-eeecccceEEeccccc
Q 005587          669 VS-QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       669 ~~-~~~~~~~~~~apE~~~  686 (689)
                      .. ....++..|++||.+.
T Consensus       156 ~~~~~~~~~~~y~~PE~~~  174 (277)
T cd06641         156 IKRNTFVGTPFWMAPEVIK  174 (277)
T ss_pred             hhhccccCCccccChhhhc
Confidence            21 1234567899999863

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.89  E-value=7.8e-23  Score=216.31  Aligned_cols=173  Identities=24%  Similarity=0.338  Sum_probs=139.8

Q ss_pred             CCCccceEeecCCeEEEEEEeC---CCcEEEEEEecccc-CChhhHHHHHHHHHHHhcCCCCCcceecEEEEeC--CeEE
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP---DGKLLAVKKLDKRA-SSQQKDDEFLELVNNIDRIRHANIVELKGYCAEH--GQRL  583 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~---~g~~vAvK~l~~~~-~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~--~~~~  583 (689)
                      .|++.+.||+|+||.||+|...   +++.||+|.+.... ......+.+.+|+.++++++||||+++++++...  +..+
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   80 (316)
T cd07842           1 KYEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVY   80 (316)
T ss_pred             CceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEE
Confidence            3777889999999999999764   47899999987633 1122345677899999999999999999999988  8899


Q ss_pred             EEEeccCCCCHHHHHhcCccc-CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecC----CCcEEEEee
Q 005587          584 LIYEYCSNGTLQDMLHSDDEL-KNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDD----DLAVSVSDC  658 (689)
Q Consensus       584 lV~Ey~~ggsL~~~l~~~~~~-~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~----~~~~kl~DF  658 (689)
                      +||||+++ +|.+++...... ...+++..+..++.|++.||.|||+.   +|+||||||+||+++.    ++.+||+||
T Consensus        81 lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~h~dlkp~Nil~~~~~~~~~~~kl~Df  156 (316)
T cd07842          81 LLFDYAEH-DLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSN---WVLHRDLKPANILVMGEGPERGVVKIGDL  156 (316)
T ss_pred             EEEeCCCc-CHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhC---CEeeCCCCHHHEEEcCCCCccceEEECCC
Confidence            99999975 777776543322 23688999999999999999999987   8999999999999999    999999999


Q ss_pred             cCCccccCCCcc----eeecccceEEeccccc
Q 005587          659 GLAPLISSGSVS----QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       659 Gla~~~~~~~~~----~~~~~~~~~~apE~~~  686 (689)
                      |+++.+......    ....++..|+|||++.
T Consensus       157 g~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  188 (316)
T cd07842         157 GLARLFNAPLKPLADLDPVVVTIWYRAPELLL  188 (316)
T ss_pred             ccccccCCCcccccccCCccccccccCHHHHh
Confidence            999987543321    1123466799999763

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.89  E-value=9e-23  Score=212.42  Aligned_cols=179  Identities=23%  Similarity=0.399  Sum_probs=145.8

Q ss_pred             chhhHhhhccCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcC-CCCCcceecEEEE
Q 005587          500 TIASLQQYTNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHANIVELKGYCA  577 (689)
Q Consensus       500 ~~~~l~~~~~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~  577 (689)
                      ++.++....+.|++.+.||+|+||.||+|.. .+++.||+|.+...   .....++..|+.++.++ +|+||+++++++.
T Consensus         7 ~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~---~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~   83 (282)
T cd06636           7 DLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVT---EDEEEEIKLEINMLKKYSHHRNIATYYGAFI   83 (282)
T ss_pred             hhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecC---hHHHHHHHHHHHHHHHhcCCCcEEEEeeehh
Confidence            3344445567888899999999999999976 46889999988543   23345678889999888 6999999999985


Q ss_pred             e------CCeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCC
Q 005587          578 E------HGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDL  651 (689)
Q Consensus       578 ~------~~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~  651 (689)
                      .      .+..|+||||+.+|+|.+++....  ...+++..+..++.|++.||.|||+.   +|+|+||||+||++++++
T Consensus        84 ~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~qi~~al~~LH~~---~ivH~dl~~~nili~~~~  158 (282)
T cd06636          84 KKSPPGHDDQLWLVMEFCGAGSVTDLVKNTK--GNALKEDWIAYICREILRGLAHLHAH---KVIHRDIKGQNVLLTENA  158 (282)
T ss_pred             cccccCCCCEEEEEEEeCCCCcHHHHHHHcc--CCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCC
Confidence            3      467899999999999999987533  34578888999999999999999987   899999999999999999


Q ss_pred             cEEEEeecCCccccCC-CcceeecccceEEeccccc
Q 005587          652 AVSVSDCGLAPLISSG-SVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       652 ~~kl~DFGla~~~~~~-~~~~~~~~~~~~~apE~~~  686 (689)
                      .++|+|||++...... .......++..|+|||++.
T Consensus       159 ~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~l~  194 (282)
T cd06636         159 EVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIA  194 (282)
T ss_pred             CEEEeeCcchhhhhccccCCCcccccccccCHhhcC
Confidence            9999999999876432 1222345677899999863

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.89  E-value=5e-23  Score=215.86  Aligned_cols=166  Identities=27%  Similarity=0.366  Sum_probs=140.3

Q ss_pred             CCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEecc
Q 005587          511 FSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYC  589 (689)
Q Consensus       511 f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~  589 (689)
                      |.....||+|+||.||++.. .++..||||.+....  ....+.+.+|+..++.++|+||+++++.+...+..++||||+
T Consensus        24 ~~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~  101 (292)
T cd06658          24 LDSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRK--QQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFL  101 (292)
T ss_pred             HhhhhcccCCCCeEEEEEEECCCCCEEEEEEEecch--HHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCC
Confidence            34456799999999999965 468899999986432  334567889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCc
Q 005587          590 SNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSV  669 (689)
Q Consensus       590 ~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~  669 (689)
                      ++++|.+++..     ..+++..+..++.|++.||.|||+.   +|+||||||+||++++++.+||+|||++..+.....
T Consensus       102 ~~~~L~~~~~~-----~~l~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~  173 (292)
T cd06658         102 EGGALTDIVTH-----TRMNEEQIATVCLSVLRALSYLHNQ---GVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVP  173 (292)
T ss_pred             CCCcHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEcCCCCEEEccCcchhhcccccc
Confidence            99999998853     3578999999999999999999987   899999999999999999999999999986643322


Q ss_pred             -ceeecccceEEeccccc
Q 005587          670 -SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       670 -~~~~~~~~~~~apE~~~  686 (689)
                       .....++..|+|||.+.
T Consensus       174 ~~~~~~~~~~y~aPE~~~  191 (292)
T cd06658         174 KRKSLVGTPYWMAPEVIS  191 (292)
T ss_pred             cCceeecCccccCHHHHc
Confidence             12235667899999873

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.89  E-value=9.1e-23  Score=209.02  Aligned_cols=168  Identities=23%  Similarity=0.432  Sum_probs=141.9

Q ss_pred             CCCccceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEecc
Q 005587          510 SFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYC  589 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~  589 (689)
                      +|+..+.||+|+||.||+|.+.++..+|+|.+.....   ....|.+|++++++++||||+++++++......++||||+
T Consensus         5 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~---~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   81 (256)
T cd05112           5 ELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAM---SEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFM   81 (256)
T ss_pred             HeEEEeeecCcccceEEEEEEeCCCeEEEEECCCCCC---CHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEEcC
Confidence            5677889999999999999887788999999865432   2456889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCc
Q 005587          590 SNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSV  669 (689)
Q Consensus       590 ~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~  669 (689)
                      ++++|.+++....   ..+++..+..++.|++.||+|||+.   +++|+||||+||+++.++.+||+|||+++.......
T Consensus        82 ~~~~L~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~lH~~---~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~  155 (256)
T cd05112          82 EHGCLSDYLRAQR---GKFSQETLLGMCLDVCEGMAYLESS---NVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQY  155 (256)
T ss_pred             CCCcHHHHHHhCc---cCCCHHHHHHHHHHHHHHHHHHHHC---CccccccccceEEEcCCCeEEECCCcceeecccCcc
Confidence            9999999987532   3578999999999999999999987   899999999999999999999999999987654332


Q ss_pred             ce--eecccceEEeccccc
Q 005587          670 SQ--VSHNLTIMRAGGVTH  686 (689)
Q Consensus       670 ~~--~~~~~~~~~apE~~~  686 (689)
                      ..  ....+..|+|||.+.
T Consensus       156 ~~~~~~~~~~~~~aPe~~~  174 (256)
T cd05112         156 TSSTGTKFPVKWSSPEVFS  174 (256)
T ss_pred             cccCCCccchhhcCHhHhc
Confidence            11  112234699999874

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.89  E-value=9.1e-23  Score=208.98  Aligned_cols=165  Identities=27%  Similarity=0.411  Sum_probs=138.6

Q ss_pred             cCCCccceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      ++|.+.+.||+|+||.||++.. +++.||+|.+....    ....+.+|+.++++++||||+++++++... ..++||||
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~~----~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~~v~e~   79 (254)
T cd05083           6 QKLTLGEIIGEGEFGAVLQGEY-TGQKVAVKNIKCDV----TAQAFLEETAVMTKLHHKNLVRLLGVILHN-GLYIVMEL   79 (254)
T ss_pred             HHceeeeeeccCCCCceEeccc-CCCceEEEeecCcc----hHHHHHHHHHHHHhCCCCCcCeEEEEEcCC-CcEEEEEC
Confidence            4578889999999999999975 67889999986432    245788999999999999999999998764 57999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      +++|+|.+++....  ...+++..++.++.|+++||.|||+.   +++||||||+||+++.++.+||+|||+++......
T Consensus        80 ~~~~~L~~~l~~~~--~~~~~~~~~~~~~~qi~~al~~lH~~---~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~~  154 (254)
T cd05083          80 MSKGNLVNFLRTRG--RALVSVIQLLQFSLDVAEGMEYLESK---KLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGV  154 (254)
T ss_pred             CCCCCHHHHHHhcC--cCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccccCcceEEEcCCCcEEECCCccceeccccC
Confidence            99999999997543  34578999999999999999999987   89999999999999999999999999998754432


Q ss_pred             cceeecccceEEeccccc
Q 005587          669 VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       669 ~~~~~~~~~~~~apE~~~  686 (689)
                      .  .......|+|||.+.
T Consensus       155 ~--~~~~~~~y~~pe~~~  170 (254)
T cd05083         155 D--NSKLPVKWTAPEALK  170 (254)
T ss_pred             C--CCCCCceecCHHHhc
Confidence            1  123346799999874

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.89  E-value=1.2e-22  Score=211.41  Aligned_cols=163  Identities=28%  Similarity=0.247  Sum_probs=133.0

Q ss_pred             eEeecCCeEEEEEEe-CCCcEEEEEEeccccCCh-hhHHHHHHHH---HHHhcCCCCCcceecEEEEeCCeEEEEEeccC
Q 005587          516 LIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQ-QKDDEFLELV---NNIDRIRHANIVELKGYCAEHGQRLLIYEYCS  590 (689)
Q Consensus       516 ~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~-~~~~~~~~e~---~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~  590 (689)
                      +||+|+||.||+|.. .+++.||+|.+.+..... .....+..|.   +.++...||||+++++++...+..++||||+.
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMN   80 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCC
Confidence            489999999999965 468999999987643221 2222233333   34555689999999999999999999999999


Q ss_pred             CCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCcc
Q 005587          591 NGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVS  670 (689)
Q Consensus       591 ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~  670 (689)
                      ||+|.+++..    ...+++..++.++.|+++||+|||+.   +|+||||||+||++++++.+||+|||+++.+..... 
T Consensus        81 g~~L~~~l~~----~~~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~di~p~nili~~~~~~kl~dfg~~~~~~~~~~-  152 (278)
T cd05606          81 GGDLHYHLSQ----HGVFSEAEMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKP-  152 (278)
T ss_pred             CCcHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHHC---CEEcCCCCHHHEEECCCCCEEEccCcCccccCccCC-
Confidence            9999998864    34689999999999999999999987   899999999999999999999999999987654332 


Q ss_pred             eeecccceEEeccccc
Q 005587          671 QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       671 ~~~~~~~~~~apE~~~  686 (689)
                      ....++..|+|||++.
T Consensus       153 ~~~~~~~~y~aPE~~~  168 (278)
T cd05606         153 HASVGTHGYMAPEVLQ  168 (278)
T ss_pred             cCcCCCcCCcCcHHhc
Confidence            2346778899999974

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.89  E-value=1.3e-22  Score=212.62  Aligned_cols=172  Identities=21%  Similarity=0.310  Sum_probs=140.6

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      ++|++.+.||+|++|.||+|... +|+.||+|.+............+.+|++++++++||||+++++++...+..|+|||
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   81 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFE   81 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEEe
Confidence            46888999999999999999765 68999999986544333344678899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecC-CCcEEEEeecCCccccC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDD-DLAVSVSDCGLAPLISS  666 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~-~~~~kl~DFGla~~~~~  666 (689)
                      |++ ++|.+++....  ...+++..+..++.||+.||+|||+.   +|+||||||+||+++. ++.+||+|||++.....
T Consensus        82 ~~~-~~l~~~~~~~~--~~~~~~~~~~~~~~qi~~aL~~LH~~---~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~  155 (294)
T PLN00009         82 YLD-LDLKKHMDSSP--DFAKNPRLIKTYLYQILRGIAYCHSH---RVLHRDLKPQNLLIDRRTNALKLADFGLARAFGI  155 (294)
T ss_pred             ccc-ccHHHHHHhCC--CCCcCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCcceEEEECCCCEEEEcccccccccCC
Confidence            996 58888876432  23467888889999999999999987   8999999999999985 56799999999987643


Q ss_pred             CCcc-eeecccceEEeccccc
Q 005587          667 GSVS-QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 ~~~~-~~~~~~~~~~apE~~~  686 (689)
                      .... ....++..|+|||++.
T Consensus       156 ~~~~~~~~~~~~~y~~PE~~~  176 (294)
T PLN00009        156 PVRTFTHEVVTLWYRAPEILL  176 (294)
T ss_pred             CccccccCceeecccCHHHHh
Confidence            3211 1223467799999863

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.89  E-value=1.2e-22  Score=218.15  Aligned_cols=177  Identities=20%  Similarity=0.279  Sum_probs=147.2

Q ss_pred             cchhhHhhhccCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEE
Q 005587          499 FTIASLQQYTNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCA  577 (689)
Q Consensus       499 ~~~~~l~~~~~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~  577 (689)
                      ....++..+.++|.+.+.||+|+||.||+|.. .+++.||+|++..........+.+.+|++++.+++||||+++++++.
T Consensus         7 ~~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~   86 (345)
T cd07877           7 ELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFT   86 (345)
T ss_pred             hHHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeee
Confidence            44566777889999999999999999999964 57899999998764433334567888999999999999999999886


Q ss_pred             eC------CeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCC
Q 005587          578 EH------GQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDL  651 (689)
Q Consensus       578 ~~------~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~  651 (689)
                      ..      ...+++++++ +++|.+++..     ..+++..+..++.|+++||+|||+.   +|+||||||+||++++++
T Consensus        87 ~~~~~~~~~~~~lv~~~~-~~~L~~~~~~-----~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIll~~~~  157 (345)
T cd07877          87 PARSLEEFNDVYLVTHLM-GADLNNIVKC-----QKLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDC  157 (345)
T ss_pred             ecccccccccEEEEehhc-ccCHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChHHEEEcCCC
Confidence            43      3468888887 7899988763     3588999999999999999999987   899999999999999999


Q ss_pred             cEEEEeecCCccccCCCcceeecccceEEeccccc
Q 005587          652 AVSVSDCGLAPLISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       652 ~~kl~DFGla~~~~~~~~~~~~~~~~~~~apE~~~  686 (689)
                      .+||+|||+++......  ....++..|+|||+..
T Consensus       158 ~~kl~dfg~~~~~~~~~--~~~~~~~~y~aPE~~~  190 (345)
T cd07877         158 ELKILDFGLARHTDDEM--TGYVATRWYRAPEIML  190 (345)
T ss_pred             CEEEecccccccccccc--cccccCCCccCHHHHh
Confidence            99999999998764432  2234567799999863

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.89  E-value=1e-22  Score=210.38  Aligned_cols=175  Identities=23%  Similarity=0.357  Sum_probs=143.9

Q ss_pred             CCCccceEeecCCeEEEEEEeCC--CcEEEEEEecccc--------CChhhHHHHHHHHHHHhc-CCCCCcceecEEEEe
Q 005587          510 SFSQENLIGAGMLGSVYRAQLPD--GKLLAVKKLDKRA--------SSQQKDDEFLELVNNIDR-IRHANIVELKGYCAE  578 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~~--g~~vAvK~l~~~~--------~~~~~~~~~~~e~~~l~~-l~HpnIv~l~~~~~~  578 (689)
                      +|++.+.||+|+||.||+|....  ++.+|+|.+....        .......++.+|+.++.+ ++||||+++++++..
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   80 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE   80 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc
Confidence            47778899999999999997654  6889999875321        112234567788887764 799999999999999


Q ss_pred             CCeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEee
Q 005587          579 HGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDC  658 (689)
Q Consensus       579 ~~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DF  658 (689)
                      .+..++||||+++++|.+++.........+++..++.++.|++.||.|||+.  .+++|+||||+||+++.++.+||+||
T Consensus        81 ~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~--~~i~H~dl~~~nil~~~~~~~~l~df  158 (269)
T cd08528          81 NDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKE--KRIVHRDLTPNNIMLGEDDKVTITDF  158 (269)
T ss_pred             CCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccC--CceeecCCCHHHEEECCCCcEEEecc
Confidence            9999999999999999998865333345689999999999999999999963  27999999999999999999999999


Q ss_pred             cCCccccCCCcceeecccceEEeccccc
Q 005587          659 GLAPLISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       659 Gla~~~~~~~~~~~~~~~~~~~apE~~~  686 (689)
                      |++.............++..|++||.+.
T Consensus       159 g~~~~~~~~~~~~~~~~~~~~~~Pe~~~  186 (269)
T cd08528         159 GLAKQKQPESKLTSVVGTILYSCPEIVK  186 (269)
T ss_pred             cceeecccccccccccCcccCcChhhhc
Confidence            9999876654333455667799999874

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.89  E-value=8.9e-23  Score=215.06  Aligned_cols=170  Identities=24%  Similarity=0.418  Sum_probs=138.2

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCc----EEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGK----LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRL  583 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~----~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~  583 (689)
                      ++|+..+.||+|+||.||+|.+. +|.    .||+|.+..... .....++.+|+.++++++||||+++++++... ..+
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~-~~~   84 (303)
T cd05110           7 TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTG-PKANVEFMDEALIMASMDHPHLVRLLGVCLSP-TIQ   84 (303)
T ss_pred             hhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCC-HHHHHHHHHHHHHHHhCCCCCcccEEEEEcCC-Cce
Confidence            46777889999999999999653 454    578888765432 33345788999999999999999999998764 467


Q ss_pred             EEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcc
Q 005587          584 LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPL  663 (689)
Q Consensus       584 lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~  663 (689)
                      +++||+++|+|.+++...   ...+++..+..++.|++.||.|||+.   +|+||||||+||++++++.+||+|||+++.
T Consensus        85 ~v~e~~~~g~l~~~~~~~---~~~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~dikp~Nill~~~~~~kL~Dfg~~~~  158 (303)
T cd05110          85 LVTQLMPHGCLLDYVHEH---KDNIGSQLLLNWCVQIAKGMMYLEER---RLVHRDLAARNVLVKSPNHVKITDFGLARL  158 (303)
T ss_pred             eeehhcCCCCHHHHHHhc---ccCCCHHHHHHHHHHHHHHHHHHhhc---CeeccccccceeeecCCCceEEcccccccc
Confidence            999999999999998753   23578999999999999999999987   899999999999999999999999999997


Q ss_pred             ccCCCccee---ecccceEEeccccc
Q 005587          664 ISSGSVSQV---SHNLTIMRAGGVTH  686 (689)
Q Consensus       664 ~~~~~~~~~---~~~~~~~~apE~~~  686 (689)
                      +........   ...+..|+|||.+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~y~~PE~~~  184 (303)
T cd05110         159 LEGDEKEYNADGGKMPIKWMALECIH  184 (303)
T ss_pred             ccCcccccccCCCccccccCCHHHhc
Confidence            754332211   12245699999874

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.89  E-value=1.4e-22  Score=208.60  Aligned_cols=163  Identities=23%  Similarity=0.308  Sum_probs=141.4

Q ss_pred             EeecCCeEEEEEEeC-CCcEEEEEEeccccCC-hhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccCCCCH
Q 005587          517 IGAGMLGSVYRAQLP-DGKLLAVKKLDKRASS-QQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTL  594 (689)
Q Consensus       517 iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~ggsL  594 (689)
                      ||.|+||.||+|+.. +++.||+|.+...... ......+.+|+++++.++||||+++++++...+..++||||+++++|
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGEL   80 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCcH
Confidence            689999999999764 5899999998764332 23456789999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCcceeec
Q 005587          595 QDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSH  674 (689)
Q Consensus       595 ~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~  674 (689)
                      .+++...    ..+++..+..++.|+++||.|||+.   +++|+||||+||+++.++.++|+|||+++.+..........
T Consensus        81 ~~~l~~~----~~l~~~~~~~~~~~i~~~l~~lH~~---~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~~~~~~~  153 (262)
T cd05572          81 WTILRDR----GLFDEYTARFYIACVVLAFEYLHNR---GIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQKTWTFC  153 (262)
T ss_pred             HHHHhhc----CCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCHHHEEEcCCCCEEEeeCCcccccCccccccccc
Confidence            9999753    3588899999999999999999987   89999999999999999999999999999887654334445


Q ss_pred             ccceEEeccccc
Q 005587          675 NLTIMRAGGVTH  686 (689)
Q Consensus       675 ~~~~~~apE~~~  686 (689)
                      ++..|++||.+.
T Consensus       154 ~~~~~~~PE~~~  165 (262)
T cd05572         154 GTPEYVAPEIIL  165 (262)
T ss_pred             CCcCccChhHhc
Confidence            677899999863

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=9.6e-23  Score=210.65  Aligned_cols=173  Identities=27%  Similarity=0.401  Sum_probs=145.2

Q ss_pred             hccCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcC-CCCCcceecEEEEeCC----
Q 005587          507 YTNSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHANIVELKGYCAEHG----  580 (689)
Q Consensus       507 ~~~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~~~----  580 (689)
                      .+++|++.+.||+|+||.||+|... +++.+++|++....   .....+.+|+.+++++ +|+||+++++++....    
T Consensus         4 ~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~---~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~   80 (275)
T cd06608           4 PTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIE---DEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGN   80 (275)
T ss_pred             chhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCc---hhHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCc
Confidence            4578999999999999999999764 67899999986543   2346788999999998 7999999999997644    


Q ss_pred             --eEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEee
Q 005587          581 --QRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDC  658 (689)
Q Consensus       581 --~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DF  658 (689)
                        ..++||||+++++|.+++.........+++..+..++.|+++||.|||+.   +++|+||+|+||++++++.+||+||
T Consensus        81 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~---~i~H~~l~p~ni~~~~~~~~~l~d~  157 (275)
T cd06608          81 DDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHEN---KVIHRDIKGQNILLTKNAEVKLVDF  157 (275)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEEccCCeEEECCC
Confidence              48999999999999999875432345789999999999999999999987   8999999999999999999999999


Q ss_pred             cCCccccCCC-cceeecccceEEecccc
Q 005587          659 GLAPLISSGS-VSQVSHNLTIMRAGGVT  685 (689)
Q Consensus       659 Gla~~~~~~~-~~~~~~~~~~~~apE~~  685 (689)
                      |++....... ......++..|+|||++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~  185 (275)
T cd06608         158 GVSAQLDSTLGRRNTFIGTPYWMAPEVI  185 (275)
T ss_pred             ccceecccchhhhcCccccccccCHhHh
Confidence            9998764432 22234466789999986

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.89  E-value=1.6e-22  Score=207.88  Aligned_cols=165  Identities=27%  Similarity=0.424  Sum_probs=132.3

Q ss_pred             ceEeecCCeEEEEEEeC----CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEe-CCeEEEEEecc
Q 005587          515 NLIGAGMLGSVYRAQLP----DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAE-HGQRLLIYEYC  589 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~~----~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~-~~~~~lV~Ey~  589 (689)
                      +.||+|+||.||+|.+.    +...||+|.+.... .......+.+|+.+++.++||||+++++++.. ++..++||||+
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~   79 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRIT-DLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYM   79 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccC-CHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecC
Confidence            46899999999999753    24579999875432 23445678899999999999999999998764 55689999999


Q ss_pred             CCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCc
Q 005587          590 SNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSV  669 (689)
Q Consensus       590 ~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~  669 (689)
                      .+|+|.+++...   .....+..++.++.|+++||.|||+.   +|+||||||+|||+++++.+||+|||+++.+.....
T Consensus        80 ~~~~L~~~~~~~---~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~  153 (262)
T cd05058          80 KHGDLRNFIRSE---THNPTVKDLIGFGLQVAKGMEYLASK---KFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEY  153 (262)
T ss_pred             CCCCHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccCcceEEEcCCCcEEECCccccccccCCcc
Confidence            999999999753   23467788899999999999999987   899999999999999999999999999986644321


Q ss_pred             ce-----eecccceEEeccccc
Q 005587          670 SQ-----VSHNLTIMRAGGVTH  686 (689)
Q Consensus       670 ~~-----~~~~~~~~~apE~~~  686 (689)
                      ..     ....+..|+|||...
T Consensus       154 ~~~~~~~~~~~~~~y~aPE~~~  175 (262)
T cd05058         154 YSVHNHTGAKLPVKWMALESLQ  175 (262)
T ss_pred             eeecccccCcCCccccChhHhc
Confidence            11     112345699999863

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.89  E-value=1.8e-22  Score=209.95  Aligned_cols=171  Identities=23%  Similarity=0.399  Sum_probs=142.6

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-----CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEe--CCe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-----DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAE--HGQ  581 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-----~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~--~~~  581 (689)
                      +.|+..+.||+|+||.||+|.+.     ++..||||.+...... .....|.+|++++++++|+||+++++++..  ...
T Consensus         4 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~-~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~   82 (284)
T cd05038           4 RHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEE-QHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRS   82 (284)
T ss_pred             hhchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccch-HHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCc
Confidence            35677789999999999999753     3689999998765432 346789999999999999999999999887  557


Q ss_pred             EEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCC
Q 005587          582 RLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA  661 (689)
Q Consensus       582 ~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla  661 (689)
                      .++||||+++++|.+++....   ..+++..++.++.|++.||+|||+.   +|+|+||||+||+++.++.++|+|||++
T Consensus        83 ~~lv~e~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~  156 (284)
T cd05038          83 LRLIMEYLPSGSLRDYLQRHR---DQINLKRLLLFSSQICKGMDYLGSQ---RYIHRDLAARNILVESEDLVKISDFGLA  156 (284)
T ss_pred             eEEEEecCCCCCHHHHHHhCc---cccCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHhEEEcCCCCEEEcccccc
Confidence            899999999999999997542   3589999999999999999999987   8999999999999999999999999999


Q ss_pred             ccccCCCcce----eecccceEEeccccc
Q 005587          662 PLISSGSVSQ----VSHNLTIMRAGGVTH  686 (689)
Q Consensus       662 ~~~~~~~~~~----~~~~~~~~~apE~~~  686 (689)
                      ..+.......    .......|++||...
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~  185 (284)
T cd05038         157 KVLPEDKDYYYVKEPGESPIFWYAPECLR  185 (284)
T ss_pred             cccccCCcceeccCCCCCcccccCcHHHc
Confidence            9876432211    123345689999763

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.89  E-value=6.7e-23  Score=211.01  Aligned_cols=169  Identities=21%  Similarity=0.329  Sum_probs=145.9

Q ss_pred             CCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      +|+..+.||+|+||.||+|... +++.||+|.+..... .....++.+|++++++++||||+++++++...+..++||||
T Consensus         2 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (265)
T cd06605           2 DLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEIN-EAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICMEY   80 (265)
T ss_pred             cchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccC-hHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEEe
Confidence            5777889999999999999765 689999999876543 34567788999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHh-CCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE-ICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~-~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      +++++|.+++....   ..+++.....++.|+++||.|||+ .   +++|+||||+||++++++.++|+|||++..+...
T Consensus        81 ~~~~~L~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~lH~~~---~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~  154 (265)
T cd06605          81 MDGGSLDKILKEVQ---GRIPERILGKIAVAVLKGLTYLHEKH---KIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNS  154 (265)
T ss_pred             cCCCcHHHHHHHcc---CCCCHHHHHHHHHHHHHHHHHHcCCC---CeecCCCCHHHEEECCCCCEEEeecccchhhHHH
Confidence            99999999997632   568889999999999999999998 5   8999999999999999999999999999877543


Q ss_pred             CcceeecccceEEeccccc
Q 005587          668 SVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~~~~~~~~~~~~apE~~~  686 (689)
                      .... ..++..|++||.+.
T Consensus       155 ~~~~-~~~~~~y~~PE~~~  172 (265)
T cd06605         155 LAKT-FVGTSSYMAPERIQ  172 (265)
T ss_pred             Hhhc-ccCChhccCHHHHc
Confidence            3222 55667899999863

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=1.6e-22  Score=209.86  Aligned_cols=168  Identities=24%  Similarity=0.412  Sum_probs=143.1

Q ss_pred             CCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCC---CCCcceecEEEEeCCeEEEE
Q 005587          510 SFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR---HANIVELKGYCAEHGQRLLI  585 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~---HpnIv~l~~~~~~~~~~~lV  585 (689)
                      .|+..+.||+|+||.||+|.. .+++.||+|.+..... .....++.+|++++++++   ||||+++++++...+..++|
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv   80 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTP-DDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWII   80 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCC-chhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEE
Confidence            477788999999999999975 5789999999865432 234456888999988886   99999999999999999999


Q ss_pred             EeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcccc
Q 005587          586 YEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS  665 (689)
Q Consensus       586 ~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~  665 (689)
                      |||+++++|.+++..     ..+++...+.++.|+++||.|||+.   +|+|+||+|+||++++++.++|+|||++..+.
T Consensus        81 ~e~~~~~~L~~~~~~-----~~l~~~~~~~i~~~i~~~l~~lh~~---~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~  152 (277)
T cd06917          81 MEYAEGGSVRTLMKA-----GPIAEKYISVIIREVLVALKYIHKV---GVIHRDIKAANILVTNTGNVKLCDFGVAALLN  152 (277)
T ss_pred             EecCCCCcHHHHHHc-----cCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcCHHHEEEcCCCCEEEccCCceeecC
Confidence            999999999999864     2688999999999999999999987   89999999999999999999999999998876


Q ss_pred             CCCc-ceeecccceEEeccccc
Q 005587          666 SGSV-SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       666 ~~~~-~~~~~~~~~~~apE~~~  686 (689)
                      .... .....++..|+|||.+.
T Consensus       153 ~~~~~~~~~~~~~~y~aPE~~~  174 (277)
T cd06917         153 QNSSKRSTFVGTPYWMAPEVIT  174 (277)
T ss_pred             CCccccccccCCcceeCHHHhc
Confidence            5432 22234667899999863

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.89  E-value=1.6e-22  Score=209.26  Aligned_cols=173  Identities=27%  Similarity=0.379  Sum_probs=139.4

Q ss_pred             CCccceEeecCCeEEEEEEeC----CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCC------
Q 005587          511 FSQENLIGAGMLGSVYRAQLP----DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHG------  580 (689)
Q Consensus       511 f~~~~~iG~G~~G~Vy~~~~~----~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~------  580 (689)
                      |.+.+.||+|+||.||+|.+.    +++.||||++..........+++.+|++++++++||||+++++++...+      
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   80 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLP   80 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCccc
Confidence            556789999999999999653    3688999998765544555677899999999999999999999886532      


Q ss_pred             eEEEEEeccCCCCHHHHHhcCc--ccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEee
Q 005587          581 QRLLIYEYCSNGTLQDMLHSDD--ELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDC  658 (689)
Q Consensus       581 ~~~lV~Ey~~ggsL~~~l~~~~--~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DF  658 (689)
                      ..++++||+.+|+|.+++....  .....+++...+.++.|++.||+|||+.   +|+||||||+||+++.++.+||+||
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~nili~~~~~~kl~df  157 (273)
T cd05074          81 IPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSK---NFIHRDLAARNCMLNENMTVCVADF  157 (273)
T ss_pred             ceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeecccchhhEEEcCCCCEEECcc
Confidence            3478999999999998875422  1123578899999999999999999987   8999999999999999999999999


Q ss_pred             cCCccccCCCcc---eeecccceEEeccccc
Q 005587          659 GLAPLISSGSVS---QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       659 Gla~~~~~~~~~---~~~~~~~~~~apE~~~  686 (689)
                      |+++.+......   ........|++||.+.
T Consensus       158 g~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~  188 (273)
T cd05074         158 GLSKKIYSGDYYRQGCASKLPVKWLALESLA  188 (273)
T ss_pred             cccccccCCcceecCCCccCchhhcCHhHHh
Confidence            999977543321   1123345689999864

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.89  E-value=1.7e-22  Score=206.80  Aligned_cols=169  Identities=29%  Similarity=0.468  Sum_probs=141.9

Q ss_pred             CCccceEeecCCeEEEEEEeCC-----CcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEE
Q 005587          511 FSQENLIGAGMLGSVYRAQLPD-----GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLI  585 (689)
Q Consensus       511 f~~~~~iG~G~~G~Vy~~~~~~-----g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV  585 (689)
                      |++.+.||+|+||.||+|+..+     +..||+|.+..... ......+..|++.+..++|+||+++++++...+..+++
T Consensus         1 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i   79 (258)
T smart00219        1 LTLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDAD-EQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIV   79 (258)
T ss_pred             CcccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCC-hHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEE
Confidence            3456889999999999997653     38899999865432 22567889999999999999999999999999999999


Q ss_pred             EeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcccc
Q 005587          586 YEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS  665 (689)
Q Consensus       586 ~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~  665 (689)
                      |||+++++|.+++....  ...+++..+..++.|++.||+|||+.   +++|+||||+||++++++.++|+|||+++...
T Consensus        80 ~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~ql~~~l~~lh~~---~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~  154 (258)
T smart00219       80 MEYMEGGDLLDYLRKNR--PKELSLSDLLSFALQIARGMEYLESK---NFIHRDLAARNCLVGENLVVKISDFGLSRDLY  154 (258)
T ss_pred             EeccCCCCHHHHHHhhh--hccCCHHHHHHHHHHHHHHHHHHhcC---CeeecccccceEEEccCCeEEEcccCCceecc
Confidence            99999999999997632  12289999999999999999999987   89999999999999999999999999998876


Q ss_pred             CCCccee--ecccceEEecccc
Q 005587          666 SGSVSQV--SHNLTIMRAGGVT  685 (689)
Q Consensus       666 ~~~~~~~--~~~~~~~~apE~~  685 (689)
                      .......  ...+..|+|||.+
T Consensus       155 ~~~~~~~~~~~~~~~y~~Pe~~  176 (258)
T smart00219      155 DDDYYKKKGGKLPIRWMAPESL  176 (258)
T ss_pred             cccccccccCCCcccccChHHh
Confidence            5532221  2244679999976

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.89  E-value=1.6e-22  Score=217.15  Aligned_cols=169  Identities=21%  Similarity=0.306  Sum_probs=142.4

Q ss_pred             hccCCCccceEeecCCeEEEEEE-eCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCC-----
Q 005587          507 YTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHG-----  580 (689)
Q Consensus       507 ~~~~f~~~~~iG~G~~G~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~-----  580 (689)
                      ..++|++.+.||+|+||.||+|. ..+|..||||++............+.+|++++++++||||+++++++....     
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07880          13 VPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDRF   92 (343)
T ss_pred             cccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCcccccc
Confidence            45789999999999999999996 457899999998654433344567889999999999999999999987643     


Q ss_pred             -eEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeec
Q 005587          581 -QRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCG  659 (689)
Q Consensus       581 -~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG  659 (689)
                       ..++||||+ +++|.+++..     ..+++..+..++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||
T Consensus        93 ~~~~lv~e~~-~~~l~~~~~~-----~~l~~~~~~~i~~qi~~al~~LH~~---gi~H~dlkp~Nill~~~~~~kl~dfg  163 (343)
T cd07880          93 HDFYLVMPFM-GTDLGKLMKH-----EKLSEDRIQFLVYQMLKGLKYIHAA---GIIHRDLKPGNLAVNEDCELKILDFG  163 (343)
T ss_pred             ceEEEEEecC-CCCHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeecc
Confidence             468999999 7799988863     3588999999999999999999987   89999999999999999999999999


Q ss_pred             CCccccCCCcceeecccceEEeccccc
Q 005587          660 LAPLISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       660 la~~~~~~~~~~~~~~~~~~~apE~~~  686 (689)
                      ++.........  ..++..|+|||.+.
T Consensus       164 ~~~~~~~~~~~--~~~~~~y~aPE~~~  188 (343)
T cd07880         164 LARQTDSEMTG--YVVTRWYRAPEVIL  188 (343)
T ss_pred             cccccccCccc--cccCCcccCHHHHh
Confidence            99877543322  34567899999864

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=2.9e-22  Score=204.47  Aligned_cols=169  Identities=24%  Similarity=0.395  Sum_probs=147.3

Q ss_pred             CCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      +|++.+.||+|++|.||++... +++.|++|.+............+.+|++++.+++|+|++++++++...+..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   80 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEY   80 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEec
Confidence            4777899999999999999654 688999999976654445567899999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      +++++|.+++...    ..+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.++|+|||++.......
T Consensus        81 ~~~~~L~~~~~~~----~~l~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~  153 (254)
T cd06627          81 AENGSLRQIIKKF----GPFPESLVAVYVYQVLQGLAYLHEQ---GVIHRDIKAANILTTKDGVVKLADFGVATKLNDVS  153 (254)
T ss_pred             CCCCcHHHHHHhc----cCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCHHHEEECCCCCEEEeccccceecCCCc
Confidence            9999999998753    4689999999999999999999987   89999999999999999999999999999876654


Q ss_pred             cc-eeecccceEEecccc
Q 005587          669 VS-QVSHNLTIMRAGGVT  685 (689)
Q Consensus       669 ~~-~~~~~~~~~~apE~~  685 (689)
                      .. ....++..|+|||..
T Consensus       154 ~~~~~~~~~~~y~~pe~~  171 (254)
T cd06627         154 KDDASVVGTPYWMAPEVI  171 (254)
T ss_pred             ccccccccchhhcCHhhh
Confidence            31 224566779999976

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.89  E-value=1.1e-22  Score=208.20  Aligned_cols=172  Identities=20%  Similarity=0.346  Sum_probs=144.6

Q ss_pred             CCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      +|+..+.||+|+||.||+|... +|..||+|.+..........+.+.+|++++++++|+||+++++++...+..++||||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~   80 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVMEY   80 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEec
Confidence            4777899999999999999765 588999999876543334456788999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCC-cEEEEeecCCccccCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDL-AVSVSDCGLAPLISSG  667 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~-~~kl~DFGla~~~~~~  667 (689)
                      +++++|.+++....  ...+++..++.++.|+++||.|||+.   +++|+||||+||++++++ .+||+|||.+..+...
T Consensus        81 ~~~~~L~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~  155 (257)
T cd08225          81 CDGGDLMKRINRQR--GVLFSEDQILSWFVQISLGLKHIHDR---KILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDS  155 (257)
T ss_pred             CCCCcHHHHHHhcc--CCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEcCCCCeEEecccccchhccCC
Confidence            99999999987532  23578999999999999999999987   899999999999999875 5699999999877543


Q ss_pred             Cc-ceeecccceEEeccccc
Q 005587          668 SV-SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~-~~~~~~~~~~~apE~~~  686 (689)
                      .. .....++..|+|||+..
T Consensus       156 ~~~~~~~~~~~~~~ape~~~  175 (257)
T cd08225         156 MELAYTCVGTPYYLSPEICQ  175 (257)
T ss_pred             cccccccCCCccccCHHHHc
Confidence            32 22234667799999763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.89  E-value=4.8e-23  Score=211.73  Aligned_cols=161  Identities=20%  Similarity=0.344  Sum_probs=133.6

Q ss_pred             ceEeecCCeEEEEEEeCC-C-------cEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          515 NLIGAGMLGSVYRAQLPD-G-------KLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~~~-g-------~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      +.||+|+||.||+|.... +       ..||+|.+....  ....+.+.+|+.+++.++||||+++++++...+..++||
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~--~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~   78 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSH--RNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQ   78 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchh--HHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEE
Confidence            368999999999996532 2       348888775432  234567888999999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCc--------EEEEee
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLA--------VSVSDC  658 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~--------~kl~DF  658 (689)
                      ||+++|+|.++++...   ..+++..++.++.||+.||+|||+.   +|+||||||+||+++.++.        ++++||
T Consensus        79 e~~~~g~L~~~l~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~---~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~  152 (258)
T cd05078          79 EYVKFGSLDTYLKKNK---NLINISWKLEVAKQLAWALHFLEDK---GLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDP  152 (258)
T ss_pred             ecCCCCcHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCccceEEEecccccccCCCceEEeccc
Confidence            9999999999997542   3688999999999999999999987   8999999999999987664        699999


Q ss_pred             cCCccccCCCcceeecccceEEeccccc
Q 005587          659 GLAPLISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       659 Gla~~~~~~~~~~~~~~~~~~~apE~~~  686 (689)
                      |++.......   ...++..|+|||++.
T Consensus       153 g~~~~~~~~~---~~~~~~~y~aPE~~~  177 (258)
T cd05078         153 GISITVLPKE---ILLERIPWVPPECIE  177 (258)
T ss_pred             ccccccCCch---hccccCCccCchhcc
Confidence            9998765432   234567799999875

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.89  E-value=1.7e-22  Score=210.43  Aligned_cols=170  Identities=21%  Similarity=0.326  Sum_probs=142.0

Q ss_pred             CCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEecc
Q 005587          511 FSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYC  589 (689)
Q Consensus       511 f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~  589 (689)
                      |++.+.||+|++|.||+|.. .+|..||+|++............+.+|++++++++||||+++++++...+..++||||+
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~~   80 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEFL   80 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEecc
Confidence            56678999999999999965 47999999998755433334467888999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCc
Q 005587          590 SNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSV  669 (689)
Q Consensus       590 ~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~  669 (689)
                      + ++|.+++....  ...+++..++.++.|+++||+|||+.   +++||||+|+||+++.++.++|+|||+++.+.....
T Consensus        81 ~-~~l~~~~~~~~--~~~~~~~~~~~~~~~i~~~L~~lH~~---~~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~~~  154 (283)
T cd07835          81 D-LDLKKYMDSSP--LTGLDPPLIKSYLYQLLQGIAYCHSH---RVLHRDLKPQNLLIDREGALKLADFGLARAFGVPVR  154 (283)
T ss_pred             C-cCHHHHHhhCC--CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCcEEEeecccccccCCCcc
Confidence            5 69999987533  24689999999999999999999987   899999999999999999999999999987643321


Q ss_pred             c-eeecccceEEeccccc
Q 005587          670 S-QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       670 ~-~~~~~~~~~~apE~~~  686 (689)
                      . ....++..|+|||++.
T Consensus       155 ~~~~~~~~~~~~aPE~~~  172 (283)
T cd07835         155 TYTHEVVTLWYRAPEILL  172 (283)
T ss_pred             ccCccccccCCCCCceee
Confidence            1 1223467799999763

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.89  E-value=1.8e-22  Score=210.15  Aligned_cols=171  Identities=21%  Similarity=0.369  Sum_probs=142.3

Q ss_pred             CCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      +|+..+.||+|++|.||+|+.. +|+.||||.+..... ......+.+|++++++++|+||+++++++...+..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   79 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAE-EGTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFEY   79 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEeccccc-ccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEec
Confidence            4788899999999999999765 689999999875432 22345677899999999999999999999999999999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      +++ +|.+++..... ...+++..+..++.|++.||.|||+.   +|+||||||+||++++++.++|+|||+++.+....
T Consensus        80 ~~~-~l~~~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~~  154 (284)
T cd07836          80 MDK-DLKKYMDTHGV-RGALDPNTVKSFTYQLLKGIAFCHEN---RVLHRDLKPQNLLINKRGELKLADFGLARAFGIPV  154 (284)
T ss_pred             CCc-cHHHHHHhcCC-CCCcCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEECCCCcEEEeecchhhhhcCCc
Confidence            985 89888865332 34689999999999999999999987   89999999999999999999999999998764432


Q ss_pred             cc-eeecccceEEeccccc
Q 005587          669 VS-QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       669 ~~-~~~~~~~~~~apE~~~  686 (689)
                      .. ....++..|++||++.
T Consensus       155 ~~~~~~~~~~~y~~PE~~~  173 (284)
T cd07836         155 NTFSNEVVTLWYRAPDVLL  173 (284)
T ss_pred             cccccccccccccChHHhc
Confidence            11 1223456799999863

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.89  E-value=1.2e-22  Score=213.55  Aligned_cols=173  Identities=25%  Similarity=0.351  Sum_probs=142.2

Q ss_pred             hccCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCC-----
Q 005587          507 YTNSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHG-----  580 (689)
Q Consensus       507 ~~~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~-----  580 (689)
                      ..++|++.+.||+|+||.||+|... +|+.||+|.+............+.+|++++++++||||+++++++....     
T Consensus         5 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~~   84 (302)
T cd07864           5 CVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALDF   84 (302)
T ss_pred             hhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhhc
Confidence            4567899999999999999999765 5889999998754332333456778999999999999999999987654     


Q ss_pred             -----eEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEE
Q 005587          581 -----QRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSV  655 (689)
Q Consensus       581 -----~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl  655 (689)
                           ..++||||+++ ++.+.+...   ...+++..++.++.|++.||+|||+.   +|+|+||||+||++++++.+||
T Consensus        85 ~~~~~~~~lv~e~~~~-~l~~~l~~~---~~~~~~~~~~~i~~qi~~aL~~LH~~---~i~H~dl~p~nili~~~~~~kl  157 (302)
T cd07864          85 KKDKGAFYLVFEYMDH-DLMGLLESG---LVHFSEDHIKSFMKQLLEGLNYCHKK---NFLHRDIKCSNILLNNKGQIKL  157 (302)
T ss_pred             cccCCcEEEEEcccCc-cHHHHHhcC---CCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCcEEe
Confidence                 78999999976 777777643   34689999999999999999999987   8999999999999999999999


Q ss_pred             EeecCCccccCCCcc--eeecccceEEeccccc
Q 005587          656 SDCGLAPLISSGSVS--QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       656 ~DFGla~~~~~~~~~--~~~~~~~~~~apE~~~  686 (689)
                      +|||++..+......  ........|+|||++.
T Consensus       158 ~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~  190 (302)
T cd07864         158 ADFGLARLYNSEESRPYTNKVITLWYRPPELLL  190 (302)
T ss_pred             CcccccccccCCcccccccceeccCccChHHhc
Confidence            999999987654321  1123356799999763

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=2.9e-23  Score=220.65  Aligned_cols=148  Identities=20%  Similarity=0.289  Sum_probs=127.9

Q ss_pred             CCCccceEeecCCeEEEEEE-eCCCcEEEEEEeccccCC-hhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          510 SFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASS-QQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~-~~~g~~vAvK~l~~~~~~-~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      -|...+.||-|+||.|.+++ ..+...||.|.+++...- .........|-.+|.....+-||+||-.|.+.+.+|+|||
T Consensus       630 mFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDkdnLYFVMd  709 (1034)
T KOG0608|consen  630 MFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMD  709 (1034)
T ss_pred             ceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCCceEEEEe
Confidence            45666789999999999995 556788999998765321 2233456678889999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccc
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI  664 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~  664 (689)
                      |++||++..+|..    ...+++..++.|+.++..|+++.|..   |+|||||||+|||||.+|++||+||||+.-+
T Consensus       710 YIPGGDmMSLLIr----mgIFeE~LARFYIAEltcAiesVHkm---GFIHRDiKPDNILIDrdGHIKLTDFGLCTGf  779 (1034)
T KOG0608|consen  710 YIPGGDMMSLLIR----MGIFEEDLARFYIAELTCAIESVHKM---GFIHRDIKPDNILIDRDGHIKLTDFGLCTGF  779 (1034)
T ss_pred             ccCCccHHHHHHH----hccCHHHHHHHHHHHHHHHHHHHHhc---cceecccCccceEEccCCceeeeeccccccc
Confidence            9999999999876    34678888999999999999999987   8999999999999999999999999998744

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.89  E-value=2.9e-22  Score=204.56  Aligned_cols=170  Identities=28%  Similarity=0.390  Sum_probs=149.5

Q ss_pred             CCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeC--CeEEEEE
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEH--GQRLLIY  586 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~--~~~~lV~  586 (689)
                      +|...+.||+|++|.||+|... +++.|++|.+..........+.+.+|+..+++++|+||+++++++...  +..++||
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~   80 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFL   80 (260)
T ss_pred             CceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEE
Confidence            4677889999999999999765 689999999876554345567889999999999999999999999988  8999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      ||+++++|.+++...    ..+++..+..++.|+++||+|||+.   +++|+||+|+||+++.++.++|+|||.+.....
T Consensus        81 e~~~~~~L~~~~~~~----~~~~~~~~~~~~~~l~~~l~~lh~~---~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~  153 (260)
T cd06606          81 EYVSGGSLSSLLKKF----GKLPEPVIRKYTRQILEGLAYLHSN---GIVHRDIKGANILVDSDGVVKLADFGCAKRLGD  153 (260)
T ss_pred             EecCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEcCCCCEEEcccccEEeccc
Confidence            999999999999753    2789999999999999999999997   899999999999999999999999999998876


Q ss_pred             CCc---ceeecccceEEeccccc
Q 005587          667 GSV---SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 ~~~---~~~~~~~~~~~apE~~~  686 (689)
                      ...   .....++..|++||.+.
T Consensus       154 ~~~~~~~~~~~~~~~y~~pE~~~  176 (260)
T cd06606         154 IETGEGTGSVRGTPYWMAPEVIR  176 (260)
T ss_pred             ccccccccCCCCCccccCHhhhc
Confidence            653   34456778899999874

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.89  E-value=9.9e-23  Score=214.16  Aligned_cols=166  Identities=27%  Similarity=0.326  Sum_probs=140.2

Q ss_pred             CCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEecc
Q 005587          511 FSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYC  589 (689)
Q Consensus       511 f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~  589 (689)
                      |+....||+|+||.||+|.. .+++.||+|.+.....  ...+.+.+|+.+++.++||||+++++++...+..++||||+
T Consensus        23 ~~~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~--~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~  100 (297)
T cd06659          23 LENYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQ--QRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFL  100 (297)
T ss_pred             HHhhhhcCCCCceeEEEEEEcCCCCEEEEEEEEeccc--chHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecC
Confidence            33445799999999999965 4689999999865432  33456889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCc
Q 005587          590 SNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSV  669 (689)
Q Consensus       590 ~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~  669 (689)
                      ++++|.+++..     ..+++..+..++.|++.||.|||+.   +|+||||||+||+++.++.+||+|||++..+.....
T Consensus       101 ~~~~L~~~~~~-----~~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~~  172 (297)
T cd06659         101 QGGALTDIVSQ-----TRLNEEQIATVCESVLQALCYLHSQ---GVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVP  172 (297)
T ss_pred             CCCCHHHHHhh-----cCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHeEEccCCcEEEeechhHhhcccccc
Confidence            99999998753     3578999999999999999999987   899999999999999999999999999986654332


Q ss_pred             -ceeecccceEEeccccc
Q 005587          670 -SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       670 -~~~~~~~~~~~apE~~~  686 (689)
                       .....++..|+|||++.
T Consensus       173 ~~~~~~~~~~y~aPE~~~  190 (297)
T cd06659         173 KRKSLVGTPYWMAPEVIS  190 (297)
T ss_pred             cccceecCccccCHHHHc
Confidence             12244667899999874

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.89  E-value=1.6e-22  Score=213.12  Aligned_cols=171  Identities=23%  Similarity=0.362  Sum_probs=139.2

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCC-------
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHG-------  580 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~-------  580 (689)
                      ++|++.+.||+|+||.||+|... +++.||||.+............+.+|++++++++||||+++++++...+       
T Consensus        12 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   91 (310)
T cd07865          12 SKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNRYK   91 (310)
T ss_pred             hheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccCCC
Confidence            56888999999999999999764 6899999998654333333445678999999999999999999987653       


Q ss_pred             -eEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeec
Q 005587          581 -QRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCG  659 (689)
Q Consensus       581 -~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG  659 (689)
                       ..++||||+. ++|.+++...   ...+++.+++.++.|++.||+|||+.   +++|+||||+||+++.++.+||+|||
T Consensus        92 ~~~~lv~e~~~-~~l~~~l~~~---~~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg  164 (310)
T cd07865          92 GSFYLVFEFCE-HDLAGLLSNK---NVKFTLSEIKKVMKMLLNGLYYIHRN---KILHRDMKAANILITKDGILKLADFG  164 (310)
T ss_pred             ceEEEEEcCCC-cCHHHHHHhc---ccCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEECCCCcEEECcCC
Confidence             4599999996 4888887643   23589999999999999999999987   89999999999999999999999999


Q ss_pred             CCccccCCCcc-----eeecccceEEeccccc
Q 005587          660 LAPLISSGSVS-----QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       660 la~~~~~~~~~-----~~~~~~~~~~apE~~~  686 (689)
                      ++..+......     ....++..|+|||++.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  196 (310)
T cd07865         165 LARAFSLSKNSKPNRYTNRVVTLWYRPPELLL  196 (310)
T ss_pred             CcccccCCcccCCCCccCcccCccccCcHHhc
Confidence            99877543321     1123456699999863

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.88  E-value=2.7e-22  Score=208.48  Aligned_cols=167  Identities=24%  Similarity=0.300  Sum_probs=137.9

Q ss_pred             CCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCC-CCCcceecEEEEeC--CeEEEEE
Q 005587          511 FSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR-HANIVELKGYCAEH--GQRLLIY  586 (689)
Q Consensus       511 f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~-HpnIv~l~~~~~~~--~~~~lV~  586 (689)
                      |++.+.||+|+||.||+|.. .+++.||+|++....... ......+|+.++.++. |+||+++++++.+.  +..++||
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~-~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~   79 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSL-EQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVF   79 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCc-hhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEE
Confidence            56678899999999999965 468999999987543222 2234457888888885 99999999999987  8999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      ||++ |+|.+.+...   ...++|..++.++.|+++||+|||+.   +|+||||||+||+++. +.+||+|||+++.+..
T Consensus        80 e~~~-~~l~~~l~~~---~~~~~~~~~~~~~~qi~~~L~~LH~~---~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~~  151 (282)
T cd07831          80 ELMD-MNLYELIKGR---KRPLPEKRVKSYMYQLLKSLDHMHRN---GIFHRDIKPENILIKD-DILKLADFGSCRGIYS  151 (282)
T ss_pred             ecCC-ccHHHHHHhc---cCCCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEcC-CCeEEEeccccccccc
Confidence            9997 5888887653   24689999999999999999999987   8999999999999999 9999999999998765


Q ss_pred             CCcceeecccceEEeccccc
Q 005587          667 GSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 ~~~~~~~~~~~~~~apE~~~  686 (689)
                      ........++..|+|||...
T Consensus       152 ~~~~~~~~~~~~y~aPE~~~  171 (282)
T cd07831         152 KPPYTEYISTRWYRAPECLL  171 (282)
T ss_pred             CCCcCCCCCCcccCChhHhh
Confidence            54433345677899999763

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.88  E-value=4.1e-22  Score=210.38  Aligned_cols=168  Identities=30%  Similarity=0.445  Sum_probs=142.1

Q ss_pred             ccCCCccceEeecCCeEEEEEEeC-CCcEEEEEEecccc-CChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEE
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRA-SSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLI  585 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV  585 (689)
                      .+.|+..+.||+|+||.||+|... +|+.||+|.+.... ........+.+|+++++.++||||+++++++...+..|+|
T Consensus        14 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv   93 (307)
T cd06607          14 EKLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLV   93 (307)
T ss_pred             chhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEE
Confidence            356888899999999999999764 68999999986432 2234456788999999999999999999999999999999


Q ss_pred             EeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcccc
Q 005587          586 YEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS  665 (689)
Q Consensus       586 ~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~  665 (689)
                      |||+. |++.+++...   ...+++..+..++.|++.||.|||+.   +|+||||+|+||++++++.+||+|||++....
T Consensus        94 ~e~~~-g~l~~~~~~~---~~~l~~~~~~~~~~ql~~~L~~LH~~---~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~  166 (307)
T cd06607          94 MEYCL-GSASDILEVH---KKPLQEVEIAAICHGALQGLAYLHSH---ERIHRDIKAGNILLTEPGTVKLADFGSASLVS  166 (307)
T ss_pred             HHhhC-CCHHHHHHHc---ccCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcccEEECCCCCEEEeecCcceecC
Confidence            99997 5777776532   24589999999999999999999987   89999999999999999999999999998765


Q ss_pred             CCCcceeecccceEEecccc
Q 005587          666 SGSVSQVSHNLTIMRAGGVT  685 (689)
Q Consensus       666 ~~~~~~~~~~~~~~~apE~~  685 (689)
                      ...   ...++..|+|||++
T Consensus       167 ~~~---~~~~~~~y~aPE~~  183 (307)
T cd06607         167 PAN---SFVGTPYWMAPEVI  183 (307)
T ss_pred             CCC---CccCCccccCceee
Confidence            443   23456789999986

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.88  E-value=6.9e-23  Score=217.60  Aligned_cols=169  Identities=25%  Similarity=0.436  Sum_probs=144.4

Q ss_pred             CCCccceEeecCCeEEEEEEeCC---Cc--EEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEE
Q 005587          510 SFSQENLIGAGMLGSVYRAQLPD---GK--LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLL  584 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~~---g~--~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~l  584 (689)
                      .....++||+|-||.||+|.+.+   |+  .||||..+.... ..+.+.|+.|.-+|++++|||||+++|.|.+. ..|+
T Consensus       390 ~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t-~d~tekflqEa~iMrnfdHphIikLIGv~~e~-P~Wi  467 (974)
T KOG4257|consen  390 LITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCT-PDDTEKFLQEASIMRNFDHPHIIKLIGVCVEQ-PMWI  467 (974)
T ss_pred             hccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCC-hhhHHHHHHHHHHHHhCCCcchhheeeeeecc-ceeE
Confidence            34456789999999999996532   33  588888765443 45578899999999999999999999999875 6899


Q ss_pred             EEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccc
Q 005587          585 IYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI  664 (689)
Q Consensus       585 V~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~  664 (689)
                      |||.++-|.|..+|+..   +..++......++.||..||.|||+.   .+|||||-..|||+...--+||+||||++.+
T Consensus       468 vmEL~~~GELr~yLq~n---k~sL~l~tL~ly~~Qi~talaYLeSk---rfVHRDIAaRNiLVsSp~CVKLaDFGLSR~~  541 (974)
T KOG4257|consen  468 VMELAPLGELREYLQQN---KDSLPLRTLTLYCYQICTALAYLESK---RFVHRDIAARNILVSSPQCVKLADFGLSRYL  541 (974)
T ss_pred             EEecccchhHHHHHHhc---cccchHHHHHHHHHHHHHHHHHHHhh---chhhhhhhhhheeecCcceeeecccchhhhc
Confidence            99999999999999875   35688889999999999999999998   8999999999999999999999999999999


Q ss_pred             cCCCcceeecccce--EEeccccc
Q 005587          665 SSGSVSQVSHNLTI--MRAGGVTH  686 (689)
Q Consensus       665 ~~~~~~~~~~~~~~--~~apE~~~  686 (689)
                      .+......+.+...  |||||.+.
T Consensus       542 ed~~yYkaS~~kLPIKWmaPESIN  565 (974)
T KOG4257|consen  542 EDDAYYKASRGKLPIKWMAPESIN  565 (974)
T ss_pred             cccchhhccccccceeecCccccc
Confidence            88776655544432  99999985

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.88  E-value=1.8e-22  Score=215.94  Aligned_cols=169  Identities=22%  Similarity=0.333  Sum_probs=139.5

Q ss_pred             ccCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeC-----Ce
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEH-----GQ  581 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~-----~~  581 (689)
                      .++|++.+.||+|+||.||+|.. .+|+.||||.+..... ......+.+|+.++++++||||+++++++...     ..
T Consensus         4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~   82 (336)
T cd07849           4 GPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEH-QTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFND   82 (336)
T ss_pred             ccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEeccccc-chhHHHHHHHHHHHHhCCCCCcCchhheeecccccccce
Confidence            46899999999999999999965 5789999999864322 23445678899999999999999999987654     35


Q ss_pred             EEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCC
Q 005587          582 RLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA  661 (689)
Q Consensus       582 ~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla  661 (689)
                      .|+||||+. ++|.+++..     ..+++..+..++.|+++||.|||+.   +|+||||||+||+++.++.+||+|||++
T Consensus        83 ~~lv~e~~~-~~l~~~~~~-----~~l~~~~~~~i~~ql~~aL~~LH~~---~ivH~dlkp~Nill~~~~~~kl~dfg~~  153 (336)
T cd07849          83 VYIVQELME-TDLYKLIKT-----QHLSNDHIQYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTNCDLKICDFGLA  153 (336)
T ss_pred             EEEEehhcc-cCHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEECCCCCEEECcccce
Confidence            799999996 488888763     4689999999999999999999987   8999999999999999999999999999


Q ss_pred             ccccCCCcc----eeecccceEEeccccc
Q 005587          662 PLISSGSVS----QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       662 ~~~~~~~~~----~~~~~~~~~~apE~~~  686 (689)
                      +........    ....++..|+|||++.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  182 (336)
T cd07849         154 RIADPEHDHTGFLTEYVATRWYRAPEIML  182 (336)
T ss_pred             eeccccccccCCcCCcCcCCCccChHHhh
Confidence            876543221    1234567799999863

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.88  E-value=1.1e-22  Score=217.54  Aligned_cols=169  Identities=21%  Similarity=0.345  Sum_probs=140.8

Q ss_pred             cCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEe----CCeEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAE----HGQRL  583 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~----~~~~~  583 (689)
                      ++|++.+.||+|+||.||+|.. .+|+.||+|++............+.+|+.++++++||||+++++++..    ....+
T Consensus         5 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   84 (334)
T cd07855           5 SRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDVY   84 (334)
T ss_pred             hceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceEE
Confidence            6788899999999999999965 469999999987654333445667789999999999999999998763    35789


Q ss_pred             EEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcc
Q 005587          584 LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPL  663 (689)
Q Consensus       584 lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~  663 (689)
                      +||||+. |+|.+++..    ...+++..+..++.||++||.|||+.   +|+||||||+||++++++.+||+|||+++.
T Consensus        85 lv~e~~~-~~l~~~~~~----~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~dfg~~~~  156 (334)
T cd07855          85 VVMDLME-SDLHHIIHS----DQPLTEEHIRYFLYQLLRGLKYIHSA---NVIHRDLKPSNLLVNEDCELRIGDFGMARG  156 (334)
T ss_pred             EEEehhh-hhHHHHhcc----CCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCcEEeccccccee
Confidence            9999995 689998865    23589999999999999999999987   899999999999999999999999999987


Q ss_pred             ccCCCcc-----eeecccceEEecccc
Q 005587          664 ISSGSVS-----QVSHNLTIMRAGGVT  685 (689)
Q Consensus       664 ~~~~~~~-----~~~~~~~~~~apE~~  685 (689)
                      +......     ....++..|+|||++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~y~~PE~~  183 (334)
T cd07855         157 LSSSPTEHKYFMTEYVATRWYRAPELL  183 (334)
T ss_pred             ecccCcCCCcccccccccccccChHHh
Confidence            6543221     123456779999986

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.88  E-value=2.7e-22  Score=210.40  Aligned_cols=168  Identities=24%  Similarity=0.365  Sum_probs=143.3

Q ss_pred             cCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      ++|.+.+.||+|+||.||++.. .+++.||+|.+....  ....+.+.+|+.++++++||||+++++++...+..|+|||
T Consensus        19 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~--~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e   96 (293)
T cd06647          19 KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQ--QPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVME   96 (293)
T ss_pred             hhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEecccc--chHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEEe
Confidence            5788889999999999999964 468899999986432  2334678899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+++++|.+++..     ..+++..+..++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++..+...
T Consensus        97 ~~~~~~L~~~~~~-----~~l~~~~~~~i~~~l~~al~~LH~~---gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~  168 (293)
T cd06647          97 YLAGGSLTDVVTE-----TCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE  168 (293)
T ss_pred             cCCCCcHHHHHhh-----cCCCHHHHHHHHHHHHHHHHHHHhC---CEeeccCCHHHEEEcCCCCEEEccCcceeccccc
Confidence            9999999999864     3478899999999999999999987   8999999999999999999999999998876543


Q ss_pred             Ccc-eeecccceEEeccccc
Q 005587          668 SVS-QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~~-~~~~~~~~~~apE~~~  686 (689)
                      ... ....++..|++||++.
T Consensus       169 ~~~~~~~~~~~~y~~PE~~~  188 (293)
T cd06647         169 QSKRSTMVGTPYWMAPEVVT  188 (293)
T ss_pred             ccccccccCChhhcCchhhc
Confidence            321 2234566799999863

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.88  E-value=2.2e-22  Score=209.36  Aligned_cols=169  Identities=26%  Similarity=0.380  Sum_probs=142.9

Q ss_pred             CCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCC-CCCcceecEEEEeCCeEEEEEec
Q 005587          511 FSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR-HANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       511 f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~-HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      |++.+.||+|+||.||+|... +++.||||++...... .......+|+..+++++ |+||+++++++...+..++||||
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~   79 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYS-WEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEY   79 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccc-hhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEec
Confidence            566789999999999999875 5789999998654332 22334567889999999 99999999999999999999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      + +|+|.+++....  ...+++..++.++.|++.+|.|||+.   +++|+||||+||++++++.++|+|||+++......
T Consensus        80 ~-~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~Lh~~---~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~~  153 (283)
T cd07830          80 M-EGNLYQLMKDRK--GKPFSESVIRSIIYQILQGLAHIHKH---GFFHRDLKPENLLVSGPEVVKIADFGLAREIRSRP  153 (283)
T ss_pred             C-CCCHHHHHHhcc--cccCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCCEEEeecccceeccCCC
Confidence            9 889999887643  24689999999999999999999987   89999999999999999999999999999876554


Q ss_pred             cceeecccceEEeccccc
Q 005587          669 VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       669 ~~~~~~~~~~~~apE~~~  686 (689)
                      ......++..|+|||++.
T Consensus       154 ~~~~~~~~~~~~aPE~~~  171 (283)
T cd07830         154 PYTDYVSTRWYRAPEILL  171 (283)
T ss_pred             CcCCCCCcccccCceeee
Confidence            433345677899999873

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.88  E-value=2.5e-22  Score=222.28  Aligned_cols=176  Identities=20%  Similarity=0.265  Sum_probs=132.4

Q ss_pred             ccCCCccceEeecCCeEEEEEEe-----------------CCCcEEEEEEeccccCCh------------hhHHHHHHHH
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQL-----------------PDGKLLAVKKLDKRASSQ------------QKDDEFLELV  558 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~~-----------------~~g~~vAvK~l~~~~~~~------------~~~~~~~~e~  558 (689)
                      .++|++.++||+|+||.||+|.+                 ..++.||||++.......            ...+.+..|+
T Consensus       144 ~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE~  223 (507)
T PLN03224        144 SDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVEA  223 (507)
T ss_pred             ccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHHH
Confidence            56899999999999999999953                 235689999986432110            0112234466


Q ss_pred             HHHhcCCCCCc-----ceecEEEEe--------CCeEEEEEeccCCCCHHHHHhcCcc--------------------cC
Q 005587          559 NNIDRIRHANI-----VELKGYCAE--------HGQRLLIYEYCSNGTLQDMLHSDDE--------------------LK  605 (689)
Q Consensus       559 ~~l~~l~HpnI-----v~l~~~~~~--------~~~~~lV~Ey~~ggsL~~~l~~~~~--------------------~~  605 (689)
                      .++.+++|.++     ++++++|..        .+..||||||+++|+|.++++....                    ..
T Consensus       224 ~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~  303 (507)
T PLN03224        224 YMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQ  303 (507)
T ss_pred             HHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhccc
Confidence            67777776654     677777753        3568999999999999999875211                    01


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCcce--eecccceEEecc
Q 005587          606 NNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQ--VSHNLTIMRAGG  683 (689)
Q Consensus       606 ~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~--~~~~~~~~~apE  683 (689)
                      ..++|..+..++.|+++||.|||+.   +|+||||||+|||++.++.+||+|||+++.+..+....  ....++.|+|||
T Consensus       304 ~~~~~~~~~~i~~ql~~aL~~lH~~---~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~aPE  380 (507)
T PLN03224        304 DKRDINVIKGVMRQVLTGLRKLHRI---GIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPPE  380 (507)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCchHhEEECCCCcEEEEeCcCccccccCCccCccccCCCcceeChh
Confidence            2457888999999999999999987   89999999999999999999999999998765433211  123367899999


Q ss_pred             ccc
Q 005587          684 VTH  686 (689)
Q Consensus       684 ~~~  686 (689)
                      ++.
T Consensus       381 ~l~  383 (507)
T PLN03224        381 ELV  383 (507)
T ss_pred             hhc
Confidence            874

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.88  E-value=1.4e-22  Score=211.73  Aligned_cols=174  Identities=22%  Similarity=0.320  Sum_probs=139.9

Q ss_pred             CCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCC-CCCcceecEEEEeCCeEEEEEe
Q 005587          510 SFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR-HANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~-HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      +|...+.||+|+||.||++.. .+++.||+|.+...... .....+.+|+.++.++. |+||+++++++...+..+++||
T Consensus         5 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e   83 (288)
T cd06616           5 DLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDE-KEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICME   83 (288)
T ss_pred             HhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccCh-HHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEEe
Confidence            455667899999999999965 46899999998754332 44567889999999996 9999999999999999999999


Q ss_pred             ccCCCCHHHHHhcC-cccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          588 YCSNGTLQDMLHSD-DELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       588 y~~ggsL~~~l~~~-~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      |+.. ++.++.... ......+++..+..++.|+++||+|||+.  .+|+||||||+||+++.++.+||+|||+++.+..
T Consensus        84 ~~~~-~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~--~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~  160 (288)
T cd06616          84 LMDI-SLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEE--LKIIHRDVKPSNILLDRNGNIKLCDFGISGQLVD  160 (288)
T ss_pred             cccC-CHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhc--CCeeccCCCHHHEEEccCCcEEEeecchhHHhcc
Confidence            9864 655543210 01135689999999999999999999974  2799999999999999999999999999987655


Q ss_pred             CCcceeecccceEEecccccc
Q 005587          667 GSVSQVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       667 ~~~~~~~~~~~~~~apE~~~~  687 (689)
                      ........++..|+|||++..
T Consensus       161 ~~~~~~~~~~~~y~aPE~~~~  181 (288)
T cd06616         161 SIAKTRDAGCRPYMAPERIDP  181 (288)
T ss_pred             CCccccccCccCccCHHHhcc
Confidence            443344456778999998753

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.88  E-value=2.5e-22  Score=214.17  Aligned_cols=168  Identities=24%  Similarity=0.273  Sum_probs=137.1

Q ss_pred             ceEeec--CCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccCC
Q 005587          515 NLIGAG--MLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSN  591 (689)
Q Consensus       515 ~~iG~G--~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~g  591 (689)
                      +.||+|  +||+||++.. .+|+.||+|++..........+.+.+|+.+++.++||||+++++++...+..++||||+.+
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~~   83 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMAY   83 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEecccC
Confidence            456666  9999999975 4799999999876554444557788999999999999999999999999999999999999


Q ss_pred             CCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCcc-
Q 005587          592 GTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVS-  670 (689)
Q Consensus       592 gsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~-  670 (689)
                      |+|.+++....  ...+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+|++||+.+......... 
T Consensus        84 ~~l~~~l~~~~--~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~~~~  158 (328)
T cd08226          84 GSANSLLKTYF--PEGMSEALIGNILFGALRGLNYLHQN---GYIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQKA  158 (328)
T ss_pred             CCHHHHHHhhc--ccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEeCCCcEEEechHHHhhhhccCccc
Confidence            99999987642  24588999999999999999999987   8999999999999999999999999865433221111 


Q ss_pred             -------eeecccceEEecccccc
Q 005587          671 -------QVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       671 -------~~~~~~~~~~apE~~~~  687 (689)
                             .....+..|+|||++.+
T Consensus       159 ~~~~~~~~~~~~~~~y~aPE~~~~  182 (328)
T cd08226         159 KVVYDFPQFSTSVLPWLSPELLRQ  182 (328)
T ss_pred             cccccccccccCccCccChhhhcC
Confidence                   11123456999999854

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.88  E-value=5.2e-23  Score=217.32  Aligned_cols=171  Identities=20%  Similarity=0.210  Sum_probs=145.0

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCCh------hhHHHHHHHHHHHhcCC---CCCcceecEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQ------QKDDEFLELVNNIDRIR---HANIVELKGYCAE  578 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~------~~~~~~~~e~~~l~~l~---HpnIv~l~~~~~~  578 (689)
                      .+|.....+|+|+||.|+.|.++ +...|+||.+.++..-.      .+.-..-.|+++|..++   |+||++++++|++
T Consensus       561 s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFEd  640 (772)
T KOG1152|consen  561 SDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFED  640 (772)
T ss_pred             ccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheeec
Confidence            35778899999999999999654 57789999987653211      11122346899999987   9999999999999


Q ss_pred             CCeEEEEEecc-CCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEe
Q 005587          579 HGQRLLIYEYC-SNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSD  657 (689)
Q Consensus       579 ~~~~~lV~Ey~-~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~D  657 (689)
                      ++++||+||-- +|-+|+++|..    +..+++.++..|.+||+.|+++||+.   +|||||||-+|+.+|.+|-+||+|
T Consensus       641 dd~yyl~te~hg~gIDLFd~IE~----kp~m~E~eAk~IFkQV~agi~hlh~~---~ivhrdikdenvivd~~g~~klid  713 (772)
T KOG1152|consen  641 DDYYYLETEVHGEGIDLFDFIEF----KPRMDEPEAKLIFKQVVAGIKHLHDQ---GIVHRDIKDENVIVDSNGFVKLID  713 (772)
T ss_pred             CCeeEEEecCCCCCcchhhhhhc----cCccchHHHHHHHHHHHhcccccccc---CceecccccccEEEecCCeEEEee
Confidence            99999999955 46689999965    56789999999999999999999998   899999999999999999999999


Q ss_pred             ecCCccccCCCcceeecccceEEecccccc
Q 005587          658 CGLAPLISSGSVSQVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       658 FGla~~~~~~~~~~~~~~~~~~~apE~~~~  687 (689)
                      ||-|.....+.... -.+|..|.|||++..
T Consensus       714 fgsaa~~ksgpfd~-f~gtv~~aapevl~g  742 (772)
T KOG1152|consen  714 FGSAAYTKSGPFDV-FVGTVDYAAPEVLGG  742 (772)
T ss_pred             ccchhhhcCCCcce-eeeeccccchhhhCC
Confidence            99999998887654 467788999999964

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.88  E-value=3.1e-22  Score=208.32  Aligned_cols=169  Identities=25%  Similarity=0.382  Sum_probs=142.1

Q ss_pred             CCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeC--CeEEEEEe
Q 005587          511 FSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEH--GQRLLIYE  587 (689)
Q Consensus       511 f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~--~~~~lV~E  587 (689)
                      |++.+.||+|+||.||+|+.. +++.+|+|++............+.+|++++++++|+||+++++++...  +..++|||
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e   80 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFE   80 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEec
Confidence            566789999999999999765 588999999976542333456788999999999999999999999988  89999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+++ +|.+++...   ...+++..++.++.|+++||+|||+.   +++|+||||+||++++++.+||+|||++......
T Consensus        81 ~~~~-~l~~~~~~~---~~~~~~~~~~~i~~~i~~al~~LH~~---~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~  153 (287)
T cd07840          81 YMDH-DLTGLLDSP---EVKFTESQIKCYMKQLLEGLQYLHSN---GILHRDIKGSNILINNDGVLKLADFGLARPYTKR  153 (287)
T ss_pred             cccc-cHHHHHhcc---CCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEEcCCCCEEEccccceeeccCC
Confidence            9975 898888653   24689999999999999999999987   8999999999999999999999999999887654


Q ss_pred             Cc--ceeecccceEEeccccc
Q 005587          668 SV--SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~--~~~~~~~~~~~apE~~~  686 (689)
                      ..  ......+..|+|||.+.
T Consensus       154 ~~~~~~~~~~~~~y~~PE~~~  174 (287)
T cd07840         154 NSADYTNRVITLWYRPPELLL  174 (287)
T ss_pred             CcccccccccccccCCceeeE
Confidence            31  12234466799999753

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.88  E-value=4.7e-23  Score=218.30  Aligned_cols=171  Identities=25%  Similarity=0.406  Sum_probs=146.2

Q ss_pred             CCCccceEeecCCeEEEEEEeCC-CcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          510 SFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~~-g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      +.....+||-|.||.||.|.|+. .-.||||.++...+   ..++|+.|..+|+.++|||+|+++|+|......|||+||
T Consensus       268 dItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtM---eveEFLkEAAvMKeikHpNLVqLLGVCT~EpPFYIiTEf  344 (1157)
T KOG4278|consen  268 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM---EVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPPFYIITEF  344 (1157)
T ss_pred             heeeeeccCCCcccceeeeeeeccceeeehhhhhhcch---hHHHHHHHHHHHHhhcCccHHHHhhhhccCCCeEEEEec
Confidence            34456789999999999998865 67899999976543   468899999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      |..|+|.++|++..  +..++--..+.|+.||+.||+||...   ++|||||-..|.|+.++..+||+||||++++..+.
T Consensus       345 M~yGNLLdYLRecn--r~ev~avvLlyMAtQIsSaMeYLEkk---nFIHRDLAARNCLVgEnhiVKvADFGLsRlMtgDT  419 (1157)
T KOG4278|consen  345 MCYGNLLDYLRECN--RSEVPAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHIVKVADFGLSRLMTGDT  419 (1157)
T ss_pred             ccCccHHHHHHHhc--hhhcchhHHHHHHHHHHHHHHHHHHh---hhhhhhhhhhhccccccceEEeeccchhhhhcCCc
Confidence            99999999998754  33456667788999999999999987   89999999999999999999999999999998776


Q ss_pred             cceeeccc--ceEEeccccccC
Q 005587          669 VSQVSHNL--TIMRAGGVTHRN  688 (689)
Q Consensus       669 ~~~~~~~~--~~~~apE~~~~~  688 (689)
                      ...+....  .-|.|||-+-+|
T Consensus       420 YTAHAGAKFPIKWTAPEsLAyN  441 (1157)
T KOG4278|consen  420 YTAHAGAKFPIKWTAPESLAYN  441 (1157)
T ss_pred             eecccCccCcccccCccccccc
Confidence            55543333  228899988654

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.88  E-value=1.4e-22  Score=209.23  Aligned_cols=168  Identities=27%  Similarity=0.381  Sum_probs=136.6

Q ss_pred             ceEeecCCeEEEEEEeCC-------CcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          515 NLIGAGMLGSVYRAQLPD-------GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~~~-------g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      +.||+|+||.||+|+..+       +..+|||.+..... ......+.+|+.+++.++||||+++++++...+..++|||
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   79 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGAT-DQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIME   79 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccc-hhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEe
Confidence            368999999999997542       25799998865422 2345678899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcc---cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCC-----cEEEEeec
Q 005587          588 YCSNGTLQDMLHSDDE---LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDL-----AVSVSDCG  659 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~---~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~-----~~kl~DFG  659 (689)
                      |+++|+|.+++.....   ....+++..++.++.|++.||.|||+.   +++|+||||+||+++.++     .++|+|||
T Consensus        80 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg  156 (269)
T cd05044          80 LMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQM---HFIHRDLAARNCLVSEKGYDADRVVKIGDFG  156 (269)
T ss_pred             ccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhC---CcccCCCChheEEEecCCCCCCcceEECCcc
Confidence            9999999999975321   123478999999999999999999987   899999999999999877     89999999


Q ss_pred             CCccccCCCcce---eecccceEEeccccc
Q 005587          660 LAPLISSGSVSQ---VSHNLTIMRAGGVTH  686 (689)
Q Consensus       660 la~~~~~~~~~~---~~~~~~~~~apE~~~  686 (689)
                      +++.+.......   ....+..|+|||++.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  186 (269)
T cd05044         157 LARDIYKSDYYRKEGEGLLPVRWMAPESLL  186 (269)
T ss_pred             cccccccccccccCcccCCCccccCHHHHc
Confidence            998765433211   122346799999874

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.88  E-value=3.4e-22  Score=213.19  Aligned_cols=172  Identities=23%  Similarity=0.327  Sum_probs=143.7

Q ss_pred             HhhhccCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEe-CCe
Q 005587          504 LQQYTNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAE-HGQ  581 (689)
Q Consensus       504 l~~~~~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~-~~~  581 (689)
                      +..++++|++.+.||+|+||.||+|.. .+++.||||++.+........+.+.+|++++.+++||||+++++++.. .+.
T Consensus         5 ~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~   84 (328)
T cd07856           5 VFEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPLED   84 (328)
T ss_pred             eeccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCCc
Confidence            345678899999999999999999965 479999999986544333445678899999999999999999999876 567


Q ss_pred             EEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCC
Q 005587          582 RLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA  661 (689)
Q Consensus       582 ~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla  661 (689)
                      .++||||+ +++|.++++.     ..+++.....++.|+++||.|||+.   +|+||||||+||++++++.+||+|||++
T Consensus        85 ~~lv~e~~-~~~L~~~~~~-----~~~~~~~~~~~~~ql~~aL~~LH~~---~iiH~dl~p~Nili~~~~~~~l~dfg~~  155 (328)
T cd07856          85 IYFVTELL-GTDLHRLLTS-----RPLEKQFIQYFLYQILRGLKYVHSA---GVVHRDLKPSNILINENCDLKICDFGLA  155 (328)
T ss_pred             EEEEeehh-ccCHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEeECCCCCEEeCccccc
Confidence            89999999 5699988863     3578888889999999999999987   8999999999999999999999999999


Q ss_pred             ccccCCCcceeecccceEEeccccc
Q 005587          662 PLISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~apE~~~  686 (689)
                      .........  ..++..|+|||++.
T Consensus       156 ~~~~~~~~~--~~~~~~y~aPE~~~  178 (328)
T cd07856         156 RIQDPQMTG--YVSTRYYRAPEIML  178 (328)
T ss_pred             cccCCCcCC--CcccccccCceeee
Confidence            876443322  34567799999863

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.88  E-value=8.1e-22  Score=200.44  Aligned_cols=169  Identities=29%  Similarity=0.468  Sum_probs=147.6

Q ss_pred             CCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      .|...+.||+|++|.||++... +++.+++|++.....  .....+.+|++.+++++|+||+++++++...+..++++||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~   78 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESK--EKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEF   78 (253)
T ss_pred             CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccch--hHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEec
Confidence            3677889999999999999765 688999999876432  3557888999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      +++++|.+++....   ..+++..+..++.|+++||.|||..   +++|+||+|+||++++++.++|+|||.+.......
T Consensus        79 ~~~~~L~~~~~~~~---~~~~~~~~~~i~~~i~~~l~~lh~~---~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~  152 (253)
T cd05122          79 CSGGSLKDLLKSTN---QTLTESQIAYVCKELLKGLEYLHSN---GIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTK  152 (253)
T ss_pred             CCCCcHHHHHhhcC---CCCCHHHHHHHHHHHHHHHHHhhcC---CEecCCCCHHHEEEccCCeEEEeeccccccccccc
Confidence            99999999987632   4689999999999999999999986   89999999999999999999999999999887654


Q ss_pred             cceeecccceEEeccccc
Q 005587          669 VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       669 ~~~~~~~~~~~~apE~~~  686 (689)
                      ......+...|++||++.
T Consensus       153 ~~~~~~~~~~~~~PE~~~  170 (253)
T cd05122         153 ARNTMVGTPYWMAPEVIN  170 (253)
T ss_pred             cccceecCCcccCHHHHc
Confidence            333456677899999874

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.88  E-value=5.9e-22  Score=206.37  Aligned_cols=170  Identities=28%  Similarity=0.343  Sum_probs=138.9

Q ss_pred             CCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhc---CCCCCcceecEEEEeCCe-----
Q 005587          511 FSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDR---IRHANIVELKGYCAEHGQ-----  581 (689)
Q Consensus       511 f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~---l~HpnIv~l~~~~~~~~~-----  581 (689)
                      |++.+.||+|+||.||+|+.. +++.||+|++............+.+|+.++.+   ++|+||+++++++...+.     
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~   80 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELK   80 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCce
Confidence            567789999999999999876 48999999997544333334456667666554   469999999999998776     


Q ss_pred             EEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCC
Q 005587          582 RLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA  661 (689)
Q Consensus       582 ~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla  661 (689)
                      .+++|||+. ++|.+++....  ...+++..++.++.|+++||.|||+.   +++|+||||+||+++.++.+||+|||++
T Consensus        81 ~~l~~e~~~-~~l~~~l~~~~--~~~l~~~~~~~~~~~i~~al~~LH~~---~i~h~~l~~~nili~~~~~~~l~dfg~~  154 (287)
T cd07838          81 LTLVFEHVD-QDLATYLSKCP--KPGLPPETIKDLMRQLLRGVDFLHSH---RIVHRDLKPQNILVTSDGQVKIADFGLA  154 (287)
T ss_pred             eEEEehhcc-cCHHHHHHHcc--CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhEEEccCCCEEEeccCcc
Confidence            999999997 48999887532  23589999999999999999999987   8999999999999999999999999999


Q ss_pred             ccccCCCcceeecccceEEeccccc
Q 005587          662 PLISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~apE~~~  686 (689)
                      ..+..........++..|+|||++.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~PE~~~  179 (287)
T cd07838         155 RIYSFEMALTSVVVTLWYRAPEVLL  179 (287)
T ss_pred             eeccCCcccccccccccccChHHhc
Confidence            8876554433344567799999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.88  E-value=7.7e-24  Score=220.32  Aligned_cols=171  Identities=23%  Similarity=0.274  Sum_probs=151.1

Q ss_pred             cCCCccceEeecCCeEEEEEEeCCCc-EEEEEEeccccC-ChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPDGK-LLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~~g~-~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      .+++....||-|+||.|=+++..... .+|+|++++... +....+....|-++|..++.|.||++|..|.+..++|++|
T Consensus       420 ~dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvYmLm  499 (732)
T KOG0614|consen  420 SDLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVYMLM  499 (732)
T ss_pred             hhhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchhhhhhH
Confidence            35556677999999999998765433 489999987653 3344567788999999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      |-|-||.|..++...    ..++..++..|+..+.+|++|||+.   +||+|||||+|.++|.+|.+||.|||+|+.+..
T Consensus       500 EaClGGElWTiLrdR----g~Fdd~tarF~~acv~EAfeYLH~k---~iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~  572 (732)
T KOG0614|consen  500 EACLGGELWTILRDR----GSFDDYTARFYVACVLEAFEYLHRK---GIIYRDLKPENLLLDNRGYLKLVDFGFAKKIGS  572 (732)
T ss_pred             HhhcCchhhhhhhhc----CCcccchhhhhHHHHHHHHHHHHhc---CceeccCChhheeeccCCceEEeehhhHHHhcc
Confidence            999999999999874    4577788888999999999999998   899999999999999999999999999999999


Q ss_pred             CCcceeecccceEEeccccc
Q 005587          667 GSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 ~~~~~~~~~~~~~~apE~~~  686 (689)
                      +...-.-++|+.|.||||+.
T Consensus       573 g~KTwTFcGTpEYVAPEIIL  592 (732)
T KOG0614|consen  573 GRKTWTFCGTPEYVAPEIIL  592 (732)
T ss_pred             CCceeeecCCcccccchhhh
Confidence            99888899999999999994

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.88  E-value=2.9e-22  Score=214.47  Aligned_cols=171  Identities=23%  Similarity=0.320  Sum_probs=141.2

Q ss_pred             hccCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcC-CCCCcceecEEEEeC--CeE
Q 005587          507 YTNSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHANIVELKGYCAEH--GQR  582 (689)
Q Consensus       507 ~~~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~~--~~~  582 (689)
                      ..++|++.+.||+|+||.||+|... +|+.+|||++............+.+|+.+++++ +||||+++++++...  ...
T Consensus         5 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~   84 (337)
T cd07852           5 ILRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDI   84 (337)
T ss_pred             hhhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceE
Confidence            3467888999999999999999765 688999998865433334445677899999999 999999999998754  368


Q ss_pred             EEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCc
Q 005587          583 LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAP  662 (689)
Q Consensus       583 ~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~  662 (689)
                      |+||||+. ++|.+++..     ..++|..+..++.||+.||.|||+.   +|+||||||+||+++.++.+||+|||+++
T Consensus        85 ~lv~e~~~-~~L~~~~~~-----~~~~~~~~~~i~~qi~~~L~~LH~~---~i~H~dl~p~nill~~~~~~kl~d~g~~~  155 (337)
T cd07852          85 YLVFEYME-TDLHAVIRA-----NILEDVHKRYIMYQLLKALKYIHSG---NVIHRDLKPSNILLNSDCRVKLADFGLAR  155 (337)
T ss_pred             EEEecccc-cCHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCcEEEeeccchh
Confidence            99999997 599988864     2678899999999999999999987   89999999999999999999999999998


Q ss_pred             cccCCCcc------eeecccceEEeccccc
Q 005587          663 LISSGSVS------QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       663 ~~~~~~~~------~~~~~~~~~~apE~~~  686 (689)
                      .+......      ....++..|+|||++.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  185 (337)
T cd07852         156 SLSELEENPENPVLTDYVATRWYRAPEILL  185 (337)
T ss_pred             ccccccccccCcchhcccccccccCceeee
Confidence            77543321      1234566799999763

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=1.9e-24  Score=207.20  Aligned_cols=170  Identities=24%  Similarity=0.397  Sum_probs=137.5

Q ss_pred             CCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEe--------CC
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAE--------HG  580 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~--------~~  580 (689)
                      .|....+||+|.||.||+|+.+ +|+.||+|++-.+.....-....++|+++|..++|+|++.+++.|..        +.
T Consensus        18 ~yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r~   97 (376)
T KOG0669|consen   18 KYEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRDRA   97 (376)
T ss_pred             HHHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcccccc
Confidence            3555678999999999999654 57889998765433223344567899999999999999999988864        24


Q ss_pred             eEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecC
Q 005587          581 QRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGL  660 (689)
Q Consensus       581 ~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGl  660 (689)
                      ..|+||++|++ +|+-+|...   ...++..++.+++.++..||.|+|..   .|+|||+|++|+||+.+|.+||+|||+
T Consensus        98 t~ylVf~~ceh-DLaGlLsn~---~vr~sls~Ikk~Mk~Lm~GL~~iHr~---kilHRDmKaaNvLIt~dgilklADFGl  170 (376)
T KOG0669|consen   98 TFYLVFDFCEH-DLAGLLSNR---KVRFSLSEIKKVMKGLMNGLYYIHRN---KILHRDMKAANVLITKDGILKLADFGL  170 (376)
T ss_pred             eeeeeHHHhhh-hHHHHhcCc---cccccHHHHHHHHHHHHHHHHHHHHh---hHHhhcccHhhEEEcCCceEEeecccc
Confidence            58999999987 899888653   35688899999999999999999987   899999999999999999999999999


Q ss_pred             CccccCCCcc-----eeecccceEEeccccc
Q 005587          661 APLISSGSVS-----QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       661 a~~~~~~~~~-----~~~~~~~~~~apE~~~  686 (689)
                      |+.+......     ..-..|.+|+.||.+.
T Consensus       171 ar~fs~~~n~~kprytnrvvTLwYrppEllL  201 (376)
T KOG0669|consen  171 ARAFSTSKNVVKPRYTNRVVTLWYRPPELLL  201 (376)
T ss_pred             ccceecccccCCCCcccceeeeecCCHHHhh
Confidence            9876543221     2233478899999984

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.88  E-value=2.8e-22  Score=214.65  Aligned_cols=171  Identities=21%  Similarity=0.329  Sum_probs=141.5

Q ss_pred             ccCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeC-----Ce
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEH-----GQ  581 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~-----~~  581 (689)
                      .+.|.+.+.||+|+||.||+|+. .+++.||||.+............+.+|+.+++.++|+||+++++++...     ..
T Consensus         4 ~~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~   83 (337)
T cd07858           4 DTKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFND   83 (337)
T ss_pred             ccceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCc
Confidence            35788899999999999999965 4689999999875433333455677899999999999999999988654     35


Q ss_pred             EEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCC
Q 005587          582 RLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA  661 (689)
Q Consensus       582 ~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla  661 (689)
                      .|+||||+. ++|.+++..    ...+++..+..++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++
T Consensus        84 ~~lv~e~~~-~~L~~~~~~----~~~l~~~~~~~i~~qi~~aL~~LH~~---~i~H~dlkp~Nil~~~~~~~kL~Dfg~~  155 (337)
T cd07858          84 VYIVYELMD-TDLHQIIRS----SQTLSDDHCQYFLYQLLRGLKYIHSA---NVLHRDLKPSNLLLNANCDLKICDFGLA  155 (337)
T ss_pred             EEEEEeCCC-CCHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCEEECcCccc
Confidence            799999995 689988875    24689999999999999999999987   8999999999999999999999999999


Q ss_pred             ccccCCC-cceeecccceEEeccccc
Q 005587          662 PLISSGS-VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       662 ~~~~~~~-~~~~~~~~~~~~apE~~~  686 (689)
                      +...... ......++..|+|||.+.
T Consensus       156 ~~~~~~~~~~~~~~~~~~y~aPE~~~  181 (337)
T cd07858         156 RTTSEKGDFMTEYVVTRWYRAPELLL  181 (337)
T ss_pred             cccCCCcccccccccccCccChHHHh
Confidence            9775542 122234567799999763

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.88  E-value=3.9e-22  Score=204.77  Aligned_cols=163  Identities=24%  Similarity=0.303  Sum_probs=138.1

Q ss_pred             EeecCCeEEEEEEeC-CCcEEEEEEeccccC-ChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccCCCCH
Q 005587          517 IGAGMLGSVYRAQLP-DGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTL  594 (689)
Q Consensus       517 iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~ggsL  594 (689)
                      ||+|+||.||+++.. +|+.+++|.+..... .......+.+|++++++++||||+++++.+...+..|+||||+++++|
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDL   80 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCcH
Confidence            589999999999776 489999999865432 223456788999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC------
Q 005587          595 QDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS------  668 (689)
Q Consensus       595 ~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~------  668 (689)
                      .+++...    ..+++..+..++.||++||.|||+.   +++|+||+|+||++++++.++|+|||++.......      
T Consensus        81 ~~~l~~~----~~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~  153 (265)
T cd05579          81 ASLLENV----GSLDEDVARIYIAEIVLALEYLHSN---GIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLND  153 (265)
T ss_pred             HHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHc---CeecCCCCHHHeEEcCCCCEEEEecccchhcccCccccccc
Confidence            9999763    3689999999999999999999987   89999999999999999999999999988654432      


Q ss_pred             ---cceeecccceEEeccccc
Q 005587          669 ---VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       669 ---~~~~~~~~~~~~apE~~~  686 (689)
                         ......+...|++||...
T Consensus       154 ~~~~~~~~~~~~~~~~Pe~~~  174 (265)
T cd05579         154 DEKEDKRIVGTPDYIAPEVIL  174 (265)
T ss_pred             ccccccCcccCccccCHHHhc
Confidence               112234566799999863

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.88  E-value=4.8e-22  Score=207.69  Aligned_cols=170  Identities=23%  Similarity=0.276  Sum_probs=141.4

Q ss_pred             CCCccceEeecCCeEEEEEEe----CCCcEEEEEEeccccC--ChhhHHHHHHHHHHHhcC-CCCCcceecEEEEeCCeE
Q 005587          510 SFSQENLIGAGMLGSVYRAQL----PDGKLLAVKKLDKRAS--SQQKDDEFLELVNNIDRI-RHANIVELKGYCAEHGQR  582 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~----~~g~~vAvK~l~~~~~--~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~~~~~  582 (689)
                      +|++.+.||+|+||.||+++.    .+++.||||.+.+...  .......+.+|++++.++ +||||+++++.+...+..
T Consensus         1 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~   80 (288)
T cd05583           1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKL   80 (288)
T ss_pred             CceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEE
Confidence            467789999999999999864    3578899999865322  122345678899999999 599999999999999999


Q ss_pred             EEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCc
Q 005587          583 LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAP  662 (689)
Q Consensus       583 ~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~  662 (689)
                      ++||||+++|+|.+++..    ...+++..+..++.|+++||.|||+.   +++||||||+||+++.++.++|+|||+++
T Consensus        81 ~lv~e~~~~~~L~~~~~~----~~~~~~~~~~~~~~ql~~~l~~lH~~---~~~H~dl~p~nil~~~~~~~~l~dfg~~~  153 (288)
T cd05583          81 HLILDYVNGGELFTHLYQ----REHFTESEVRVYIAEIVLALDHLHQL---GIIYRDIKLENILLDSEGHVVLTDFGLSK  153 (288)
T ss_pred             EEEEecCCCCcHHHHHhh----cCCcCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEEEECcccc
Confidence            999999999999999875    24588999999999999999999987   89999999999999999999999999998


Q ss_pred             cccCCCcc--eeecccceEEeccccc
Q 005587          663 LISSGSVS--QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       663 ~~~~~~~~--~~~~~~~~~~apE~~~  686 (689)
                      .+......  ....+...|+|||.+.
T Consensus       154 ~~~~~~~~~~~~~~~~~~y~aPE~~~  179 (288)
T cd05583         154 EFLAEEEERAYSFCGTIEYMAPEVIR  179 (288)
T ss_pred             ccccccccccccccCCccccCHHHhc
Confidence            76543321  1234567899999864

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.88  E-value=4.4e-22  Score=210.64  Aligned_cols=167  Identities=17%  Similarity=0.184  Sum_probs=136.1

Q ss_pred             cceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccCCCC
Q 005587          514 ENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGT  593 (689)
Q Consensus       514 ~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~ggs  593 (689)
                      .+.+|.|+++.||++.. +++.||||++............+.+|+++++.++|+||+++++++...+..+++|||+++|+
T Consensus         7 ~~~~~~~~~v~~~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~   85 (314)
T cd08216           7 GKCFEDLMIVHLAKHKP-TNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYGS   85 (314)
T ss_pred             hHhhcCCceEEEEEecC-CCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCCC
Confidence            34455555555555544 78999999997654445566789999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCc----
Q 005587          594 LQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSV----  669 (689)
Q Consensus       594 L~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~----  669 (689)
                      |.+++....  ...+++.....++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||.+..+.....    
T Consensus        86 l~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~LH~~---~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~  160 (314)
T cd08216          86 CEDLLKTHF--PEGLPELAIAFILKDVLNALDYIHSK---GFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQRV  160 (314)
T ss_pred             HHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCcceEEEecCCceEEecCccceeeccccccccc
Confidence            999997532  34578899999999999999999987   899999999999999999999999999876543221    


Q ss_pred             ----ceeecccceEEeccccc
Q 005587          670 ----SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       670 ----~~~~~~~~~~~apE~~~  686 (689)
                          .....++..|+|||++.
T Consensus       161 ~~~~~~~~~~~~~y~aPE~~~  181 (314)
T cd08216         161 VHDFPKSSVKNLPWLSPEVLQ  181 (314)
T ss_pred             cccccccccccccccCHHHhc
Confidence                12234456799999874

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.88  E-value=2.7e-23  Score=211.28  Aligned_cols=173  Identities=20%  Similarity=0.244  Sum_probs=143.6

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhH-HHHHHHHHHHhcC-CCCCcceecEEEEeCCeEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKD-DEFLELVNNIDRI-RHANIVELKGYCAEHGQRLLI  585 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~-~~~~~e~~~l~~l-~HpnIv~l~~~~~~~~~~~lV  585 (689)
                      .+|....+||+|+||.|.+|+.+ +.+.+|||++++...-+.+. +--+.|-++|.-. +-|.+++++.+|...+.+|+|
T Consensus       349 tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDRLyFV  428 (683)
T KOG0696|consen  349 TDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDRLYFV  428 (683)
T ss_pred             cccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhheeeE
Confidence            35777899999999999999655 57889999998765433332 2234566666655 578999999999999999999


Q ss_pred             EeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccc-
Q 005587          586 YEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI-  664 (689)
Q Consensus       586 ~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~-  664 (689)
                      |||+.||+|.-.+++.+    .+.+..++-+|.+||-||=|||+.   +||+||||.+|||+|.+|++||+|||+++.- 
T Consensus       429 MEyvnGGDLMyhiQQ~G----kFKEp~AvFYAaEiaigLFFLh~k---gIiYRDLKLDNvmLd~eGHiKi~DFGmcKEni  501 (683)
T KOG0696|consen  429 MEYVNGGDLMYHIQQVG----KFKEPVAVFYAAEIAIGLFFLHSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENI  501 (683)
T ss_pred             EEEecCchhhhHHHHhc----ccCCchhhhhhHHHHHHhhhhhcC---CeeeeeccccceEeccCCceEeeecccccccc
Confidence            99999999998887643    456677889999999999999998   8999999999999999999999999999864 


Q ss_pred             cCCCcceeecccceEEeccccccC
Q 005587          665 SSGSVSQVSHNLTIMRAGGVTHRN  688 (689)
Q Consensus       665 ~~~~~~~~~~~~~~~~apE~~~~~  688 (689)
                      -.+.+...-++|+-|+||||+.|+
T Consensus       502 ~~~~TTkTFCGTPdYiAPEIi~Yq  525 (683)
T KOG0696|consen  502 FDGVTTKTFCGTPDYIAPEIIAYQ  525 (683)
T ss_pred             cCCcceeeecCCCcccccceEEec
Confidence            344566667899999999999654

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.88  E-value=6.3e-22  Score=206.55  Aligned_cols=172  Identities=24%  Similarity=0.357  Sum_probs=147.2

Q ss_pred             hhccCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEE
Q 005587          506 QYTNSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLL  584 (689)
Q Consensus       506 ~~~~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~l  584 (689)
                      ...+.|+..+.||+|+||.||+|... ++..|++|.+.....   ....+.+|++.+++++|+||+++++++...+..|+
T Consensus        16 ~~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~---~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l   92 (286)
T cd06614          16 DPRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ---NKELIINEILIMKDCKHPNIVDYYDSYLVGDELWV   92 (286)
T ss_pred             CccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch---hHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEE
Confidence            45567888899999999999999765 688999999865432   45678899999999999999999999999999999


Q ss_pred             EEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccc
Q 005587          585 IYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI  664 (689)
Q Consensus       585 V~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~  664 (689)
                      |+||+++++|.+++....   ..+++..+..++.|+++||.|||+.   +|+|+||||+||+++.++.++|+|||++...
T Consensus        93 v~e~~~~~~L~~~l~~~~---~~l~~~~~~~i~~~i~~~L~~lH~~---gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~  166 (286)
T cd06614          93 VMEYMDGGSLTDIITQNF---VRMNEPQIAYVCREVLQGLEYLHSQ---NVIHRDIKSDNILLSKDGSVKLADFGFAAQL  166 (286)
T ss_pred             EEeccCCCcHHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCChhhEEEcCCCCEEECccchhhhh
Confidence            999999999999998632   3689999999999999999999987   8999999999999999999999999998766


Q ss_pred             cCCCcc-eeecccceEEeccccc
Q 005587          665 SSGSVS-QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       665 ~~~~~~-~~~~~~~~~~apE~~~  686 (689)
                      ...... ....++..|++||++.
T Consensus       167 ~~~~~~~~~~~~~~~y~~PE~~~  189 (286)
T cd06614         167 TKEKSKRNSVVGTPYWMAPEVIK  189 (286)
T ss_pred             ccchhhhccccCCcccCCHhHhc
Confidence            543211 2234567799999863

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.88  E-value=1.2e-21  Score=207.80  Aligned_cols=166  Identities=30%  Similarity=0.452  Sum_probs=140.5

Q ss_pred             CCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccC-ChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          510 SFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      .|+..+.||+|+||.||+|+. .++..||+|.+..... .......+.+|++++++++|||++++++++...+..++|||
T Consensus        26 ~f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  105 (317)
T cd06635          26 LFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVME  105 (317)
T ss_pred             hhhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEEe
Confidence            467788999999999999975 4688999999865422 22345678899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+. |+|.+++...   ...++|..+..++.|++.||.|||+.   +|+||||+|+||+++.++.+||+|||++......
T Consensus       106 ~~~-g~l~~~~~~~---~~~l~~~~~~~i~~~i~~~l~~lH~~---~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~~  178 (317)
T cd06635         106 YCL-GSASDLLEVH---KKPLQEVEIAAITHGALQGLAYLHSH---NMIHRDIKAGNILLTEPGQVKLADFGSASIASPA  178 (317)
T ss_pred             CCC-CCHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcccEEECCCCCEEEecCCCccccCCc
Confidence            997 5888877543   34589999999999999999999987   8999999999999999999999999999876543


Q ss_pred             CcceeecccceEEecccc
Q 005587          668 SVSQVSHNLTIMRAGGVT  685 (689)
Q Consensus       668 ~~~~~~~~~~~~~apE~~  685 (689)
                      .   ...++..|+|||.+
T Consensus       179 ~---~~~~~~~y~aPE~~  193 (317)
T cd06635         179 N---SFVGTPYWMAPEVI  193 (317)
T ss_pred             c---cccCCccccChhhh
Confidence            3   23566789999986

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.87  E-value=7.9e-22  Score=202.66  Aligned_cols=162  Identities=20%  Similarity=0.207  Sum_probs=132.1

Q ss_pred             ceEeecCCeEEEEEEe-CCCcEEEEEEeccccCC-hhhHHHHHHHHHH-HhcCCCCCcceecEEEEeCCeEEEEEeccCC
Q 005587          515 NLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASS-QQKDDEFLELVNN-IDRIRHANIVELKGYCAEHGQRLLIYEYCSN  591 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~-~~~~~~~~~e~~~-l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~g  591 (689)
                      +.||+|+||.||+|.. .+|+.||||.+...... ......+..|..+ ....+|+||+++++++...+..|+||||+++
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   81 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNG   81 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCC
Confidence            4689999999999966 46899999998654321 1222334444443 4556899999999999999999999999999


Q ss_pred             CCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCcce
Q 005587          592 GTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQ  671 (689)
Q Consensus       592 gsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~  671 (689)
                      ++|.+++...    ..+++..+..++.|+++||.|||+.   +|+|+||+|+||++++++.+||+|||+++.....   .
T Consensus        82 ~~L~~~l~~~----~~~~~~~~~~i~~qi~~aL~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~---~  151 (260)
T cd05611          82 GDCASLIKTL----GGLPEDWAKQYIAEVVLGVEDLHQR---GIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLEN---K  151 (260)
T ss_pred             CCHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCcEEEeecccceecccc---c
Confidence            9999999753    3578999999999999999999987   8999999999999999999999999999875442   2


Q ss_pred             eecccceEEeccccc
Q 005587          672 VSHNLTIMRAGGVTH  686 (689)
Q Consensus       672 ~~~~~~~~~apE~~~  686 (689)
                      ...+...|+|||.+.
T Consensus       152 ~~~~~~~y~~pe~~~  166 (260)
T cd05611         152 KFVGTPDYLAPETIL  166 (260)
T ss_pred             cCCCCcCccChhhhc
Confidence            234567799999874

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.87  E-value=4e-22  Score=206.69  Aligned_cols=171  Identities=26%  Similarity=0.354  Sum_probs=145.2

Q ss_pred             cCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccC-ChhhHHHHHHHHHHHhcCC-CCCcceecEEEEeCCeEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIR-HANIVELKGYCAEHGQRLLI  585 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l~-HpnIv~l~~~~~~~~~~~lV  585 (689)
                      ++|.+.+.||+|+||.||+|... +|+.||+|++..... .......+.+|++++.+++ ||||+++++++...+..++|
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv   80 (280)
T cd05581           1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFV   80 (280)
T ss_pred             CCceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEE
Confidence            36888899999999999999764 789999999875432 2334567888999999998 99999999999999999999


Q ss_pred             EeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcccc
Q 005587          586 YEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS  665 (689)
Q Consensus       586 ~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~  665 (689)
                      |||+++++|.+++...    ..+++..+..|+.|++.||.|||+.   +++|+||||+||+++.++.++|+|||++....
T Consensus        81 ~e~~~~~~L~~~l~~~----~~l~~~~~~~i~~ql~~~l~~Lh~~---~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~  153 (280)
T cd05581          81 LEYAPNGELLQYIRKY----GSLDEKCTRFYAAEILLALEYLHSK---GIIHRDLKPENILLDKDMHIKITDFGTAKVLD  153 (280)
T ss_pred             EcCCCCCcHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHeEECCCCCEEecCCccccccC
Confidence            9999999999999763    3689999999999999999999987   89999999999999999999999999998775


Q ss_pred             CCCcc---------------------eeecccceEEeccccc
Q 005587          666 SGSVS---------------------QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       666 ~~~~~---------------------~~~~~~~~~~apE~~~  686 (689)
                      .....                     ....++..|++||+..
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~  195 (280)
T cd05581         154 PNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLN  195 (280)
T ss_pred             CccccccCCCCCccccccccccccccccccCCccccCHHHhC
Confidence            43321                     1123456799999864

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.87  E-value=3.3e-22  Score=213.19  Aligned_cols=169  Identities=22%  Similarity=0.309  Sum_probs=143.8

Q ss_pred             CCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCC-----eEE
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHG-----QRL  583 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~-----~~~  583 (689)
                      +|++.+.||+|+||.||+|... +++.||||++..........+.+.+|+.+++.++|+||+++++++...+     ..|
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVY   80 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceE
Confidence            4778899999999999999765 5899999998765433445567889999999999999999999998775     789


Q ss_pred             EEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcc
Q 005587          584 LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPL  663 (689)
Q Consensus       584 lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~  663 (689)
                      +||||++ ++|.+++...    ..+++..++.++.|+++||.|||+.   +|+||||||+|||++.++.++|+|||++..
T Consensus        81 lv~e~~~-~~l~~~l~~~----~~l~~~~~~~i~~~l~~~l~~LH~~---gi~H~dlkp~nili~~~~~~~L~dfg~~~~  152 (330)
T cd07834          81 IVTELME-TDLHKVIKSP----QPLTDDHIQYFLYQILRGLKYLHSA---NVIHRDLKPSNILVNSNCDLKICDFGLARG  152 (330)
T ss_pred             EEecchh-hhHHHHHhCC----CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEcccCceEe
Confidence            9999997 5899888752    3689999999999999999999987   899999999999999999999999999998


Q ss_pred             ccCCCc----ceeecccceEEeccccc
Q 005587          664 ISSGSV----SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       664 ~~~~~~----~~~~~~~~~~~apE~~~  686 (689)
                      ......    .....++..|+|||++.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~y~aPE~~~  179 (330)
T cd07834         153 VDPDEDEKGFLTEYVVTRWYRAPELLL  179 (330)
T ss_pred             ecccccccccccccccccCcCCceeee
Confidence            766531    22234567899999874

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.87  E-value=1.1e-23  Score=203.76  Aligned_cols=170  Identities=24%  Similarity=0.336  Sum_probs=139.3

Q ss_pred             ccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHH-hcCCCCCcceecEEEEeCCeEEEEEeccC
Q 005587          513 QENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNI-DRIRHANIVELKGYCAEHGQRLLIYEYCS  590 (689)
Q Consensus       513 ~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l-~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~  590 (689)
                      ....||.|+||+|++-.+ +.|+..|||+++.... .....+++.|.+.. +.-+.||||++||.+...+..|+.||+|.
T Consensus        68 dlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~-~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCMELMd  146 (361)
T KOG1006|consen   68 DLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNI-EKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICMELMD  146 (361)
T ss_pred             HHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccc-hHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHHHHh
Confidence            356799999999999954 5799999999987654 34556777777654 55579999999999999999999999995


Q ss_pred             CCCHHHHHhcC-cccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCc
Q 005587          591 NGTLQDMLHSD-DELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSV  669 (689)
Q Consensus       591 ggsL~~~l~~~-~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~  669 (689)
                       -||..+.+.- ...+..+++...-.|..-..+||.||....  .|||||+||+|||+|..|.+||||||++..+.+.-.
T Consensus       147 -~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~l--kiIHRDvKPSNILldr~G~vKLCDFGIcGqLv~SiA  223 (361)
T KOG1006|consen  147 -ISLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEEL--KIIHRDVKPSNILLDRHGDVKLCDFGICGQLVDSIA  223 (361)
T ss_pred             -hhHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHHh--hhhhccCChhheEEecCCCEeeecccchHhHHHHHH
Confidence             4776554321 112456888888888889999999999763  899999999999999999999999999999877666


Q ss_pred             ceeecccceEEeccccc
Q 005587          670 SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       670 ~~~~~~~~~~~apE~~~  686 (689)
                      .....+-..|||||-+.
T Consensus       224 kT~daGCrpYmAPERi~  240 (361)
T KOG1006|consen  224 KTVDAGCRPYMAPERID  240 (361)
T ss_pred             hhhccCCccccChhccC
Confidence            66667788999999873

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.87  E-value=1.3e-21  Score=202.35  Aligned_cols=168  Identities=21%  Similarity=0.241  Sum_probs=135.5

Q ss_pred             hhHhhhccCCCccceE--eecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhc-CCCCCcceecEEEE
Q 005587          502 ASLQQYTNSFSQENLI--GAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDR-IRHANIVELKGYCA  577 (689)
Q Consensus       502 ~~l~~~~~~f~~~~~i--G~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~-l~HpnIv~l~~~~~  577 (689)
                      .+.....++|++.+.+  |+|+||.||+++. .++..+|+|.+........       |+..... .+||||+++++++.
T Consensus         7 ~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~-------e~~~~~~~~~h~~iv~~~~~~~   79 (267)
T PHA03390          7 SELVQFLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNAI-------EPMVHQLMKDNPNFIKLYYSVT   79 (267)
T ss_pred             HHHHHHHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcchh-------hHHHHHHhhcCCCEEEEEEEEe
Confidence            3444555677777776  9999999999965 4688999999865432111       1111111 27999999999999


Q ss_pred             eCCeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCC-cEEEE
Q 005587          578 EHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDL-AVSVS  656 (689)
Q Consensus       578 ~~~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~-~~kl~  656 (689)
                      ..+..++||||+++|+|.+++...    ..+++..+..++.|+++||.|||+.   +++||||||+||+++.++ .++|+
T Consensus        80 ~~~~~~iv~e~~~~~~L~~~l~~~----~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~~l~  152 (267)
T PHA03390         80 TLKGHVLIMDYIKDGDLFDLLKKE----GKLSEAEVKKIIRQLVEALNDLHKH---NIIHNDIKLENVLYDRAKDRIYLC  152 (267)
T ss_pred             cCCeeEEEEEcCCCCcHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEeCCCCeEEEe
Confidence            999999999999999999999753    3789999999999999999999987   899999999999999988 99999


Q ss_pred             eecCCccccCCCcceeecccceEEeccccc
Q 005587          657 DCGLAPLISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       657 DFGla~~~~~~~~~~~~~~~~~~~apE~~~  686 (689)
                      |||+++......   ...++..|+|||++.
T Consensus       153 dfg~~~~~~~~~---~~~~~~~y~aPE~~~  179 (267)
T PHA03390        153 DYGLCKIIGTPS---CYDGTLDYFSPEKIK  179 (267)
T ss_pred             cCccceecCCCc---cCCCCCcccChhhhc
Confidence            999998765433   234677899999874

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.87  E-value=1.2e-21  Score=205.57  Aligned_cols=171  Identities=23%  Similarity=0.364  Sum_probs=140.8

Q ss_pred             cCCCccceEeecCCeEEEEEEeCC-CcEEEEEEeccccCChhhHHHHHHHHHHHhcCC-CCCcceecEEEEeCCeEEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR-HANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~~-g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~-HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      ++|++.+.||+|+||.||+|...+ ++.||||.+...... ....++.+|+.++.+.. ||||+++++++......|+||
T Consensus        15 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~   93 (296)
T cd06618          15 NDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNK-EENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFICM   93 (296)
T ss_pred             chheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCCh-HHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEEEEe
Confidence            567888999999999999998764 899999998754332 23455666777666664 999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      ||+. ++|.+++...   ...+++..+..++.|+++||.|||+.  .+|+||||+|+||++++++.+||+|||++..+..
T Consensus        94 e~~~-~~l~~l~~~~---~~~l~~~~~~~i~~~i~~~l~~lH~~--~~i~H~dl~p~nill~~~~~~kL~dfg~~~~~~~  167 (296)
T cd06618          94 ELMS-TCLDKLLKRI---QGPIPEDILGKMTVAIVKALHYLKEK--HGVIHRDVKPSNILLDASGNVKLCDFGISGRLVD  167 (296)
T ss_pred             eccC-cCHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHhh--CCEecCCCcHHHEEEcCCCCEEECccccchhccC
Confidence            9985 5787776542   23689999999999999999999974  2799999999999999999999999999988765


Q ss_pred             CCcceeecccceEEeccccc
Q 005587          667 GSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 ~~~~~~~~~~~~~~apE~~~  686 (689)
                      ........+...|+|||.+.
T Consensus       168 ~~~~~~~~~~~~y~aPE~~~  187 (296)
T cd06618         168 SKAKTRSAGCAAYMAPERID  187 (296)
T ss_pred             CCcccCCCCCccccCHhhcC
Confidence            54444445667899999874

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.87  E-value=1.7e-21  Score=203.52  Aligned_cols=166  Identities=27%  Similarity=0.363  Sum_probs=140.7

Q ss_pred             CCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEecc
Q 005587          511 FSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYC  589 (689)
Q Consensus       511 f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~  589 (689)
                      |...+.||+|++|.||++.. .+++.+++|.+....  ....+.+.+|+.+++.++||||+++++++...++.++|+||+
T Consensus        21 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~--~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~~   98 (285)
T cd06648          21 LDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRK--QQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFL   98 (285)
T ss_pred             hhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccc--hhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEecc
Confidence            44457899999999999975 468899999885432  234566889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCc
Q 005587          590 SNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSV  669 (689)
Q Consensus       590 ~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~  669 (689)
                      ++++|.+++..     ..+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.++|+|||++........
T Consensus        99 ~~~~L~~~~~~-----~~~~~~~~~~~~~ql~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~~  170 (285)
T cd06648          99 EGGALTDIVTH-----TRMNEEQIATVCLAVLKALSFLHAQ---GVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVP  170 (285)
T ss_pred             CCCCHHHHHHh-----CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChhhEEEcCCCcEEEcccccchhhccCCc
Confidence            99999999875     3578899999999999999999987   899999999999999999999999999886644321


Q ss_pred             -ceeecccceEEeccccc
Q 005587          670 -SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       670 -~~~~~~~~~~~apE~~~  686 (689)
                       .....++..|+|||.+.
T Consensus       171 ~~~~~~~~~~y~aPE~~~  188 (285)
T cd06648         171 RRKSLVGTPYWMAPEVIS  188 (285)
T ss_pred             ccccccCCccccCHHHhc
Confidence             22234677899999874

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.87  E-value=9.4e-22  Score=210.09  Aligned_cols=169  Identities=21%  Similarity=0.250  Sum_probs=137.1

Q ss_pred             CCCccceEeecCCeEEEEEEeC-C--CcEEEEEEeccccCChhhHHHHHHHHHHHhcC-CCCCcceecEEEEeC----Ce
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP-D--GKLLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHANIVELKGYCAEH----GQ  581 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~-~--g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~~----~~  581 (689)
                      +|.+.+.||+|+||.||+++.. +  +..||+|++............+.+|+++++++ .||||+++++++...    ..
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~   80 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNE   80 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCc
Confidence            4777889999999999999764 4  78899999875433333456778899999999 599999999876432    45


Q ss_pred             EEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCC
Q 005587          582 RLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA  661 (689)
Q Consensus       582 ~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla  661 (689)
                      .|++|||+. ++|.+++..    ...+++..++.++.||+.||+|||+.   +|+||||||+||++++++.+||+|||++
T Consensus        81 ~~~~~e~~~-~~L~~~l~~----~~~~~~~~~~~~~~qi~~aL~~LH~~---givH~dlkp~Nili~~~~~~kl~Dfg~a  152 (332)
T cd07857          81 LYLYEELME-ADLHQIIRS----GQPLTDAHFQSFIYQILCGLKYIHSA---NVLHRDLKPGNLLVNADCELKICDFGLA  152 (332)
T ss_pred             EEEEEeccc-CCHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHeEEcCCCCEEeCcCCCc
Confidence            789999985 689998865    34688999999999999999999987   8999999999999999999999999999


Q ss_pred             ccccCCCcc-----eeecccceEEeccccc
Q 005587          662 PLISSGSVS-----QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       662 ~~~~~~~~~-----~~~~~~~~~~apE~~~  686 (689)
                      +.+......     ....++..|+|||...
T Consensus       153 ~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~  182 (332)
T cd07857         153 RGFSENPGENAGFMTEYVATRWYRAPEIML  182 (332)
T ss_pred             eecccccccccccccCcccCccccCcHHHh
Confidence            876543221     1234677899999763

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.87  E-value=3.3e-22  Score=198.47  Aligned_cols=172  Identities=19%  Similarity=0.270  Sum_probs=146.8

Q ss_pred             ccCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCCh-hhHHHHHHHHHHHh-cCCCCCcceecEEEEeCCeEEE
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQ-QKDDEFLELVNNID-RIRHANIVELKGYCAEHGQRLL  584 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~-~~~~~~~~e~~~l~-~l~HpnIv~l~~~~~~~~~~~l  584 (689)
                      .++|.+.++||+|+|.+|..++++ +.+.+|+|+++++.... .+..-...|-.+.. .-+||.+|.++.+|.....+++
T Consensus       249 l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtesrlff  328 (593)
T KOG0695|consen  249 LQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRLFF  328 (593)
T ss_pred             cccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccceEEE
Confidence            468999999999999999999764 67899999998764332 22233344444444 3479999999999999999999


Q ss_pred             EEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcc-
Q 005587          585 IYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPL-  663 (689)
Q Consensus       585 V~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~-  663 (689)
                      |.||++||+|.-+++.    +..++++.+..+...|.-||.|||+.   +||.||||.+|+|+|..|++||+|||+++. 
T Consensus       329 vieyv~ggdlmfhmqr----qrklpeeharfys~ei~lal~flh~r---giiyrdlkldnvlldaeghikltdygmcke~  401 (593)
T KOG0695|consen  329 VIEYVNGGDLMFHMQR----QRKLPEEHARFYSAEICLALNFLHER---GIIYRDLKLDNVLLDAEGHIKLTDYGMCKEG  401 (593)
T ss_pred             EEEEecCcceeeehhh----hhcCcHHHhhhhhHHHHHHHHHHhhc---CeeeeeccccceEEccCCceeecccchhhcC
Confidence            9999999999777665    45789999999999999999999998   899999999999999999999999999985 


Q ss_pred             ccCCCcceeecccceEEeccccc
Q 005587          664 ISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       664 ~~~~~~~~~~~~~~~~~apE~~~  686 (689)
                      +.++.....-++|+-|.|||+++
T Consensus       402 l~~gd~tstfcgtpnyiapeilr  424 (593)
T KOG0695|consen  402 LGPGDTTSTFCGTPNYIAPEILR  424 (593)
T ss_pred             CCCCcccccccCCCcccchhhhc
Confidence            56777888889999999999996

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.87  E-value=1.1e-21  Score=210.44  Aligned_cols=168  Identities=22%  Similarity=0.320  Sum_probs=138.7

Q ss_pred             hccCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeC------
Q 005587          507 YTNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEH------  579 (689)
Q Consensus       507 ~~~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~------  579 (689)
                      ..++|...+.||+|+||.||+|.. .+|+.||||++............+.+|+++++.++||||+++++++...      
T Consensus        13 ~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~   92 (342)
T cd07879          13 LPERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEF   92 (342)
T ss_pred             cccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccCCCC
Confidence            346888899999999999999975 4689999999876443333345688999999999999999999998754      


Q ss_pred             CeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeec
Q 005587          580 GQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCG  659 (689)
Q Consensus       580 ~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG  659 (689)
                      ...++||||+.. +|.+++.      ..+++..+..++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||
T Consensus        93 ~~~~lv~e~~~~-~l~~~~~------~~~~~~~~~~~~~qi~~aL~~LH~~---~i~H~dlkp~NIll~~~~~~kL~dfg  162 (342)
T cd07879          93 QDFYLVMPYMQT-DLQKIMG------HPLSEDKVQYLVYQMLCGLKYIHSA---GIIHRDLKPGNLAVNEDCELKILDFG  162 (342)
T ss_pred             ceEEEEeccccc-CHHHHHc------CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEeeCC
Confidence            346999999964 7776652      3578999999999999999999987   89999999999999999999999999


Q ss_pred             CCccccCCCcceeecccceEEeccccc
Q 005587          660 LAPLISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       660 la~~~~~~~~~~~~~~~~~~~apE~~~  686 (689)
                      +++........  ..++..|+|||++.
T Consensus       163 ~~~~~~~~~~~--~~~~~~y~aPE~~~  187 (342)
T cd07879         163 LARHADAEMTG--YVVTRWYRAPEVIL  187 (342)
T ss_pred             CCcCCCCCCCC--ceeeecccChhhhc
Confidence            99876443322  24467799999864

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.87  E-value=1.3e-21  Score=205.08  Aligned_cols=163  Identities=28%  Similarity=0.368  Sum_probs=138.8

Q ss_pred             cceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccCCC
Q 005587          514 ENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNG  592 (689)
Q Consensus       514 ~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~gg  592 (689)
                      ...||+|+||.||++.. .+++.||||.+....  ......+.+|+.+++.++|+||+++++++...+..++||||++++
T Consensus        25 ~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~  102 (292)
T cd06657          25 FIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRK--QQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGG  102 (292)
T ss_pred             HHHcCCCCCeEEEEEEEcCCCeEEEEEEecccc--hhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCCC
Confidence            35799999999999966 478999999885432  334567889999999999999999999999999999999999999


Q ss_pred             CHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCc-ce
Q 005587          593 TLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSV-SQ  671 (689)
Q Consensus       593 sL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~-~~  671 (689)
                      +|.+++..     ..+++.....++.|++.||+|||+.   +++|+||||+||++++++.++|+|||++..+..... ..
T Consensus       103 ~L~~~~~~-----~~~~~~~~~~~~~ql~~~l~~lH~~---givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~~~~  174 (292)
T cd06657         103 ALTDIVTH-----TRMNEEQIAAVCLAVLKALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRK  174 (292)
T ss_pred             cHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEEcccccceeccccccccc
Confidence            99998753     3578999999999999999999987   899999999999999999999999999887654332 22


Q ss_pred             eecccceEEeccccc
Q 005587          672 VSHNLTIMRAGGVTH  686 (689)
Q Consensus       672 ~~~~~~~~~apE~~~  686 (689)
                      ...++..|++||.+.
T Consensus       175 ~~~~~~~y~~pE~~~  189 (292)
T cd06657         175 SLVGTPYWMAPELIS  189 (292)
T ss_pred             ccccCccccCHHHhc
Confidence            234567799999874

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.87  E-value=1.1e-21  Score=203.87  Aligned_cols=169  Identities=22%  Similarity=0.353  Sum_probs=143.5

Q ss_pred             CCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEecc
Q 005587          511 FSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYC  589 (689)
Q Consensus       511 f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~  589 (689)
                      |+..+.||+|++|.||+|... +++.+++|.+............+.+|++++++++|+||+++++++...+..++||||+
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   80 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFM   80 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEecc
Confidence            456788999999999999764 6899999998765444345667889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC-
Q 005587          590 SNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS-  668 (689)
Q Consensus       590 ~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~-  668 (689)
                      ++ +|.+++...   ...+++..++.++.|+++||.|||+.   +|+|+||||+||++++++.+||+|||.+..+.... 
T Consensus        81 ~~-~l~~~l~~~---~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~~  153 (283)
T cd05118          81 DT-DLYKLIKDR---QRGLPESLIKSYLYQLLQGLAFCHSH---GILHRDLKPENLLINTEGVLKLADFGLARSFGSPVR  153 (283)
T ss_pred             CC-CHHHHHHhh---cccCCHHHHHHHHHHHHHHHHHHHHC---CeeecCcCHHHEEECCCCcEEEeeeeeeEecCCCcc
Confidence            75 888888653   24689999999999999999999987   89999999999999999999999999998876544 


Q ss_pred             cceeecccceEEeccccc
Q 005587          669 VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       669 ~~~~~~~~~~~~apE~~~  686 (689)
                      ......+...|+|||.+.
T Consensus       154 ~~~~~~~~~~~~~PE~~~  171 (283)
T cd05118         154 PYTHYVVTRWYRAPELLL  171 (283)
T ss_pred             cccCccCcccccCcHHHh
Confidence            222234667799999874

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.87  E-value=1.2e-23  Score=203.59  Aligned_cols=166  Identities=21%  Similarity=0.306  Sum_probs=137.2

Q ss_pred             CccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeC-----CeEEEE
Q 005587          512 SQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEH-----GQRLLI  585 (689)
Q Consensus       512 ~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~-----~~~~lV  585 (689)
                      +..+.||-|+||.||.+.. ++|+.||+|++......-...+.+.+|++++...+|.|+...++...-.     .++|+|
T Consensus        56 ~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiYV~  135 (449)
T KOG0664|consen   56 QPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELYVL  135 (449)
T ss_pred             CCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHHHH
Confidence            3457899999999999954 5799999999865443334456788999999999999999998877653     256889


Q ss_pred             EeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcccc
Q 005587          586 YEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS  665 (689)
Q Consensus       586 ~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~  665 (689)
                      +|.|. .+|.++|-.    .+.++-+.+.-+..||++||.|||+.   +|+||||||.|+|++.+..+||||||||+...
T Consensus       136 TELmQ-SDLHKIIVS----PQ~Ls~DHvKVFlYQILRGLKYLHsA---~ILHRDIKPGNLLVNSNCvLKICDFGLARvee  207 (449)
T KOG0664|consen  136 TELMQ-SDLHKIIVS----PQALTPDHVKVFVYQILRGLKYLHTA---NILHRDIKPGNLLVNSNCILKICDFGLARTWD  207 (449)
T ss_pred             HHHHH-hhhhheecc----CCCCCcchhhhhHHHHHhhhHHHhhc---chhhccCCCccEEeccCceEEecccccccccc
Confidence            99995 488888865    56788888899999999999999998   89999999999999999999999999999765


Q ss_pred             CCCcce--eecccceEEecccc
Q 005587          666 SGSVSQ--VSHNLTIMRAGGVT  685 (689)
Q Consensus       666 ~~~~~~--~~~~~~~~~apE~~  685 (689)
                      .+....  ....|.||+|||++
T Consensus       208 ~d~~~hMTqEVVTQYYRAPEiL  229 (449)
T KOG0664|consen  208 QRDRLNMTHEVVTQYYRAPELL  229 (449)
T ss_pred             hhhhhhhHHHHHHHHhccHHHh
Confidence            544322  23456889999998

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.87  E-value=8.3e-22  Score=207.86  Aligned_cols=172  Identities=23%  Similarity=0.350  Sum_probs=138.6

Q ss_pred             ccCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeC-------
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEH-------  579 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~-------  579 (689)
                      .++|++.+.||+|+||.||+|... +++.||||++............+.+|++++++++||||+++++++...       
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   86 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRK   86 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheeccccccccc
Confidence            468999999999999999999754 689999999865433233334667899999999999999999987543       


Q ss_pred             -CeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEee
Q 005587          580 -GQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDC  658 (689)
Q Consensus       580 -~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DF  658 (689)
                       ...++||||+.+ +|...+...   ...+++..+..++.|+++||.|||+.   +|+|+||||+||++++++.+||+||
T Consensus        87 ~~~~~lv~~~~~~-~l~~~~~~~---~~~~~~~~~~~i~~~l~~al~~lH~~---~i~H~dl~p~nil~~~~~~~~l~df  159 (311)
T cd07866          87 RGSVYMVTPYMDH-DLSGLLENP---SVKLTESQIKCYMLQLLEGINYLHEN---HILHRDIKAANILIDNQGILKIADF  159 (311)
T ss_pred             CceEEEEEecCCc-CHHHHHhcc---ccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEECcC
Confidence             346999999965 777777642   24689999999999999999999987   8999999999999999999999999


Q ss_pred             cCCccccCCCccee------------ecccceEEeccccc
Q 005587          659 GLAPLISSGSVSQV------------SHNLTIMRAGGVTH  686 (689)
Q Consensus       659 Gla~~~~~~~~~~~------------~~~~~~~~apE~~~  686 (689)
                      |+++..........            ..++..|+|||++.
T Consensus       160 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  199 (311)
T cd07866         160 GLARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLL  199 (311)
T ss_pred             ccchhccCCCcccccCCcccccccccceeccCcCChHHhh
Confidence            99987654332111            12356699999763

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.86  E-value=1.3e-21  Score=209.23  Aligned_cols=170  Identities=22%  Similarity=0.258  Sum_probs=137.7

Q ss_pred             cCCC-ccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChh------------hHHHHHHHHHHHhcCCCCCcceecE
Q 005587          509 NSFS-QENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQ------------KDDEFLELVNNIDRIRHANIVELKG  574 (689)
Q Consensus       509 ~~f~-~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~------------~~~~~~~e~~~l~~l~HpnIv~l~~  574 (689)
                      ++|. +.+.||+|+||.||+|... +++.||||.+........            ....+.+|+++++.++|+||+++++
T Consensus         8 ~ry~~~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~   87 (335)
T PTZ00024          8 ERYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVD   87 (335)
T ss_pred             cchhhhhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeE
Confidence            3454 4577999999999999754 689999999865432110            0124778999999999999999999


Q ss_pred             EEEeCCeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEE
Q 005587          575 YCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVS  654 (689)
Q Consensus       575 ~~~~~~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~k  654 (689)
                      ++...+..++||||+. |+|.+++..    ...+++.....++.|+++||+|||+.   +|+|+||||+||+++.++.+|
T Consensus        88 ~~~~~~~~~lv~e~~~-~~l~~~l~~----~~~~~~~~~~~~~~ql~~aL~~LH~~---~i~H~dl~~~nill~~~~~~k  159 (335)
T PTZ00024         88 VYVEGDFINLVMDIMA-SDLKKVVDR----KIRLTESQVKCILLQILNGLNVLHKW---YFMHRDLSPANIFINSKGICK  159 (335)
T ss_pred             EEecCCcEEEEEeccc-cCHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHeEECCCCCEE
Confidence            9999999999999996 699998865    34588999999999999999999987   899999999999999999999


Q ss_pred             EEeecCCccccCCC---------------cceeecccceEEeccccc
Q 005587          655 VSDCGLAPLISSGS---------------VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       655 l~DFGla~~~~~~~---------------~~~~~~~~~~~~apE~~~  686 (689)
                      |+|||+++.+....               ......++..|+|||.+.
T Consensus       160 l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  206 (335)
T PTZ00024        160 IADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLM  206 (335)
T ss_pred             ECCccceeecccccccccccccccccccccccccccccCCCCChhcc
Confidence            99999998765111               111123456799999873

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.86  E-value=4.8e-21  Score=202.93  Aligned_cols=165  Identities=29%  Similarity=0.433  Sum_probs=138.7

Q ss_pred             CCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccC-ChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          511 FSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       511 f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      |...+.||+|+||.||+|.. .+|+.|++|.+..... .......+.+|+++++.++|||++++++++.+.+..|+||||
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  102 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEY  102 (313)
T ss_pred             hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEec
Confidence            55567899999999999975 4688999999865432 223445788899999999999999999999999999999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      +. |+|.+++...   ...+++.+++.++.|++.||.|||+.   +|+|+||||+||+++.++.+||+|||++.......
T Consensus       103 ~~-~~l~~~l~~~---~~~l~~~~~~~~~~qi~~al~~LH~~---gi~H~dl~p~nili~~~~~~kL~dfg~~~~~~~~~  175 (313)
T cd06633         103 CL-GSASDLLEVH---KKPLQEVEIAAITHGALQGLAYLHSH---NMIHRDIKAGNILLTEPGQVKLADFGSASKSSPAN  175 (313)
T ss_pred             CC-CCHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChhhEEECCCCCEEEeecCCCcccCCCC
Confidence            96 5788877643   24689999999999999999999987   89999999999999999999999999987654332


Q ss_pred             cceeecccceEEecccc
Q 005587          669 VSQVSHNLTIMRAGGVT  685 (689)
Q Consensus       669 ~~~~~~~~~~~~apE~~  685 (689)
                         ...++..|+|||++
T Consensus       176 ---~~~~~~~y~aPE~~  189 (313)
T cd06633         176 ---SFVGTPYWMAPEVI  189 (313)
T ss_pred             ---CccccccccChhhc
Confidence               23566789999986

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.86  E-value=1.1e-21  Score=203.76  Aligned_cols=169  Identities=25%  Similarity=0.378  Sum_probs=142.4

Q ss_pred             CCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEecc
Q 005587          511 FSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYC  589 (689)
Q Consensus       511 f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~  589 (689)
                      |+..+.||+|.||.||+|... +++.||+|.+............+..|+.++++++|+||+++++++...+..++||||+
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~   80 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEYC   80 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecCc
Confidence            456688999999999999765 5899999998765433334567788999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCc
Q 005587          590 SNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSV  669 (689)
Q Consensus       590 ~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~  669 (689)
                      + ++|.+++....   ..+++..+..++.|+++||.|||+.   +|+||||+|+||++++++.+||+|||+++.......
T Consensus        81 ~-~~l~~~i~~~~---~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~~  153 (282)
T cd07829          81 D-MDLKKYLDKRP---GPLSPNLIKSIMYQLLRGLAYCHSH---RILHRDLKPQNILINRDGVLKLADFGLARAFGIPLR  153 (282)
T ss_pred             C-cCHHHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChheEEEcCCCCEEEecCCcccccCCCcc
Confidence            7 59999997632   3689999999999999999999997   899999999999999999999999999988755432


Q ss_pred             c-eeecccceEEeccccc
Q 005587          670 S-QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       670 ~-~~~~~~~~~~apE~~~  686 (689)
                      . .....+..|+|||++.
T Consensus       154 ~~~~~~~~~~~~aPE~~~  171 (282)
T cd07829         154 TYTHEVVTLWYRAPEILL  171 (282)
T ss_pred             ccCccccCcCcCChHHhc
Confidence            1 1233456799999863

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.86  E-value=2.5e-21  Score=197.40  Aligned_cols=163  Identities=31%  Similarity=0.371  Sum_probs=139.8

Q ss_pred             EeecCCeEEEEEEeC-CCcEEEEEEeccccCC-hhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccCCCCH
Q 005587          517 IGAGMLGSVYRAQLP-DGKLLAVKKLDKRASS-QQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTL  594 (689)
Q Consensus       517 iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~ggsL  594 (689)
                      ||+|+||.||++... +++.+|+|.+...... ......+..|+.++++++|+||+++++.+...+..++||||+++++|
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L   80 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGEL   80 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCcH
Confidence            689999999999765 5899999998765332 22456788999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC-cceee
Q 005587          595 QDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS-VSQVS  673 (689)
Q Consensus       595 ~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~-~~~~~  673 (689)
                      .+++...    ..+++.....++.|+++||.|||+.   +++|+||||+||+++.++.++|+|||++....... .....
T Consensus        81 ~~~l~~~----~~l~~~~~~~~~~qi~~~l~~lh~~---~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~  153 (250)
T cd05123          81 FSHLSKE----GRFSEERARFYAAEIVLALEYLHSL---GIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNTF  153 (250)
T ss_pred             HHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcceEEEcCCCcEEEeecCcceecccCCCcccCC
Confidence            9999753    3589999999999999999999987   89999999999999999999999999998875542 22334


Q ss_pred             cccceEEeccccc
Q 005587          674 HNLTIMRAGGVTH  686 (689)
Q Consensus       674 ~~~~~~~apE~~~  686 (689)
                      .++..|++||.+.
T Consensus       154 ~~~~~~~~Pe~~~  166 (250)
T cd05123         154 CGTPEYLAPEVLL  166 (250)
T ss_pred             cCCccccChHHhC
Confidence            5677899999874

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.86  E-value=9.6e-22  Score=211.04  Aligned_cols=169  Identities=21%  Similarity=0.311  Sum_probs=142.7

Q ss_pred             hccCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCe----
Q 005587          507 YTNSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQ----  581 (689)
Q Consensus       507 ~~~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~----  581 (689)
                      ..++|++.+.||+|+||.||+|+.. +++.||||++............+.+|+.++++++||||+++++++...+.    
T Consensus        13 ~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07851          13 VPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDF   92 (343)
T ss_pred             ccCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhcccccccc
Confidence            4578999999999999999999765 58899999986543333445667889999999999999999998876554    


Q ss_pred             --EEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeec
Q 005587          582 --RLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCG  659 (689)
Q Consensus       582 --~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFG  659 (689)
                        .++|+||+ +++|.+++..     ..+++..+..++.|+++||.|||+.   +|+||||||+||++++++.+||+|||
T Consensus        93 ~~~~lv~e~~-~~~L~~~~~~-----~~l~~~~~~~~~~ql~~aL~~LH~~---gi~H~dlkp~Nill~~~~~~kL~dfg  163 (343)
T cd07851          93 QDVYLVTHLM-GADLNNIVKC-----QKLSDDHIQFLVYQILRGLKYIHSA---GIIHRDLKPSNIAVNEDCELKILDFG  163 (343)
T ss_pred             ccEEEEEecC-CCCHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCCEEEcccc
Confidence              89999999 6799998864     3589999999999999999999987   89999999999999999999999999


Q ss_pred             CCccccCCCcceeecccceEEeccccc
Q 005587          660 LAPLISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       660 la~~~~~~~~~~~~~~~~~~~apE~~~  686 (689)
                      ++........  ...++..|+|||++.
T Consensus       164 ~~~~~~~~~~--~~~~~~~y~aPE~~~  188 (343)
T cd07851         164 LARHTDDEMT--GYVATRWYRAPEIML  188 (343)
T ss_pred             cccccccccc--CCcccccccCHHHHh
Confidence            9998754422  234566799999863

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.86  E-value=1.2e-21  Score=191.28  Aligned_cols=143  Identities=17%  Similarity=0.179  Sum_probs=109.7

Q ss_pred             cceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhh------------------------HHHHHHHHHHHhcCCCCCc
Q 005587          514 ENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQK------------------------DDEFLELVNNIDRIRHANI  569 (689)
Q Consensus       514 ~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~------------------------~~~~~~e~~~l~~l~HpnI  569 (689)
                      ...||+|+||.||+|...+|+.||||+++........                        ......|++.+.++.|+++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v   81 (190)
T cd05147           2 NGCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGI   81 (190)
T ss_pred             CCccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            4679999999999998879999999998754221111                        1122358899999988877


Q ss_pred             ceecEEEEeCCeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHH-HhCCCCCcEEecccCCCeEec
Q 005587          570 VELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYL-HEICQPPIVHRNFKSANILLD  648 (689)
Q Consensus       570 v~l~~~~~~~~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yL-H~~~~~~iiHrDlKp~NILl~  648 (689)
                      .....+...  ..+|||||++|+++......    ...+++.....++.|++.+|.|+ |+.   +|+||||||+|||++
T Consensus        82 ~~p~~~~~~--~~~iVmE~i~g~~l~~~~~~----~~~~~~~~~~~i~~qi~~~L~~l~H~~---giiHrDlkP~NIli~  152 (190)
T cd05147          82 PCPEPILLK--SHVLVMEFIGDDGWAAPRLK----DAPLSESKARELYLQVIQIMRILYQDC---RLVHADLSEYNLLYH  152 (190)
T ss_pred             CCCcEEEec--CCEEEEEEeCCCCCcchhhh----cCCCCHHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEE
Confidence            544333222  23899999999877654322    23578899999999999999999 565   899999999999998


Q ss_pred             CCCcEEEEeecCCccccC
Q 005587          649 DDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       649 ~~~~~kl~DFGla~~~~~  666 (689)
                       ++.++|+|||+|.....
T Consensus       153 -~~~v~LiDFG~a~~~~~  169 (190)
T cd05147         153 -DGKLYIIDVSQSVEHDH  169 (190)
T ss_pred             -CCcEEEEEccccccCCC
Confidence             47899999999986543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.86  E-value=1.7e-21  Score=200.10  Aligned_cols=173  Identities=18%  Similarity=0.261  Sum_probs=139.0

Q ss_pred             CCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccc---cCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEE
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKR---ASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLI  585 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV  585 (689)
                      +|.+.+.||+|+||.||++... .+..+++|.+...   .........+.+|+.++++++||||+++++++...+..++|
T Consensus         1 ~y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   80 (260)
T cd08222           1 RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCII   80 (260)
T ss_pred             CceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEE
Confidence            4778899999999999999654 3455666655432   22223445677889999999999999999999999999999


Q ss_pred             EeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcccc
Q 005587          586 YEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS  665 (689)
Q Consensus       586 ~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~  665 (689)
                      |||+++++|.+++.........+++..++.++.|+++||.|||+.   +++|+||||+||++++ +.+||+|||+++.+.
T Consensus        81 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~h~~l~~~nili~~-~~~~l~d~g~~~~~~  156 (260)
T cd08222          81 TEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQR---RILHRDLKAKNIFLKN-NLLKIGDFGVSRLLM  156 (260)
T ss_pred             EEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHc---CccccCCChhheEeec-CCEeecccCceeecC
Confidence            999999999999875433345789999999999999999999987   8999999999999975 569999999998775


Q ss_pred             CCCc-ceeecccceEEeccccc
Q 005587          666 SGSV-SQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       666 ~~~~-~~~~~~~~~~~apE~~~  686 (689)
                      .... .....++..|+|||.+.
T Consensus       157 ~~~~~~~~~~~~~~~~~pe~~~  178 (260)
T cd08222         157 GSCDLATTFTGTPYYMSPEALK  178 (260)
T ss_pred             CCcccccCCCCCcCccCHHHHc
Confidence            4332 22334567799999763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.86  E-value=2.8e-22  Score=189.97  Aligned_cols=163  Identities=20%  Similarity=0.334  Sum_probs=142.1

Q ss_pred             ccCCCccceEeecCCeEEEEEE-eCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCC-CCCcceecEEEEeC--CeEE
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR-HANIVELKGYCAEH--GQRL  583 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~-HpnIv~l~~~~~~~--~~~~  583 (689)
                      .++|++.+++|+|.|+.||.|. ..+.+.++||+++.     ...+.+.+|+.+|..|+ |||||++++...++  ....
T Consensus        37 ~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKP-----VkkkKIkREikIL~nL~gg~NIi~L~DiV~Dp~Sktpa  111 (338)
T KOG0668|consen   37 QDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKP-----VKKKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPS  111 (338)
T ss_pred             cchHHHHHHHcCccHhhHhcccccCCCceEEEeeech-----HHHHHHHHHHHHHHhccCCCCeeehhhhhcCccccCch
Confidence            3678999999999999999994 56788999999864     34577889999999997 99999999998875  3567


Q ss_pred             EEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecC-CCcEEEEeecCCc
Q 005587          584 LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDD-DLAVSVSDCGLAP  662 (689)
Q Consensus       584 lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~-~~~~kl~DFGla~  662 (689)
                      ||+||+.+-+...+..       .++...+..++.+++.||.|+|+.   ||+|||+||.|++||. ...++|+|+|||.
T Consensus       112 LiFE~v~n~Dfk~ly~-------tl~d~dIryY~~elLkALdyCHS~---GImHRDVKPhNvmIdh~~rkLrlIDWGLAE  181 (338)
T KOG0668|consen  112 LIFEYVNNTDFKQLYP-------TLTDYDIRYYIYELLKALDYCHSM---GIMHRDVKPHNVMIDHELRKLRLIDWGLAE  181 (338)
T ss_pred             hHhhhhccccHHHHhh-------hhchhhHHHHHHHHHHHHhHHHhc---CcccccCCcceeeechhhceeeeeecchHh
Confidence            9999999998887754       466677888999999999999998   8999999999999996 5579999999999


Q ss_pred             cccCCCcceeecccceEEecccc
Q 005587          663 LISSGSVSQVSHNLTIMRAGGVT  685 (689)
Q Consensus       663 ~~~~~~~~~~~~~~~~~~apE~~  685 (689)
                      ++.++..-..-....+|.-||.+
T Consensus       182 FYHp~~eYnVRVASRyfKGPELL  204 (338)
T KOG0668|consen  182 FYHPGKEYNVRVASRYFKGPELL  204 (338)
T ss_pred             hcCCCceeeeeeehhhcCCchhe
Confidence            99988777667778899999988

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.85  E-value=5.8e-21  Score=201.77  Aligned_cols=166  Identities=28%  Similarity=0.451  Sum_probs=139.5

Q ss_pred             CCCccceEeecCCeEEEEEEeC-CCcEEEEEEecccc-CChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRA-SSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      .|+..+.||+|+||.||+|... ++..||+|.+.... .......++.+|+++++.++|+|++++++++...+..++|||
T Consensus        16 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   95 (308)
T cd06634          16 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVME   95 (308)
T ss_pred             HHHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEEE
Confidence            4666788999999999999764 67899999986432 223345678899999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |+. |+|.+++...   ...+++..+..++.|++.||.|||+.   +++||||||+||+++.++.+||+|||++......
T Consensus        96 ~~~-~~l~~~~~~~---~~~l~~~~~~~~~~~l~~~l~~LH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~  168 (308)
T cd06634          96 YCL-GSASDLLEVH---KKPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA  168 (308)
T ss_pred             ccC-CCHHHHHHHc---CCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHhEEECCCCcEEECCcccceeecCc
Confidence            996 6888877543   24578999999999999999999987   8999999999999999999999999999876543


Q ss_pred             CcceeecccceEEecccc
Q 005587          668 SVSQVSHNLTIMRAGGVT  685 (689)
Q Consensus       668 ~~~~~~~~~~~~~apE~~  685 (689)
                      .   ...++..|+|||.+
T Consensus       169 ~---~~~~~~~y~aPE~~  183 (308)
T cd06634         169 N---XFVGTPYWMAPEVI  183 (308)
T ss_pred             c---cccCCccccCHHHH
Confidence            2   23456789999986

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.85  E-value=7.7e-21  Score=199.47  Aligned_cols=170  Identities=19%  Similarity=0.245  Sum_probs=125.2

Q ss_pred             cCCCccceEeecCCeEEEEEEeCC----CcEEEEEEeccccCChhh---------HHHHHHHHHHHhcCCCCCcceecEE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPD----GKLLAVKKLDKRASSQQK---------DDEFLELVNNIDRIRHANIVELKGY  575 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~~----g~~vAvK~l~~~~~~~~~---------~~~~~~e~~~l~~l~HpnIv~l~~~  575 (689)
                      +.|++.++||+|+||.||+|...+    +..+|+|...........         ......+...+..+.|+||++++++
T Consensus        12 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~   91 (294)
T PHA02882         12 KEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYGC   91 (294)
T ss_pred             CceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEEe
Confidence            578999999999999999997654    456677654322211101         1112234455677899999999998


Q ss_pred             EEeCC----eEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCC
Q 005587          576 CAEHG----QRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDL  651 (689)
Q Consensus       576 ~~~~~----~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~  651 (689)
                      +....    ..+++||++. .++.+.+...    ...++..+..|+.|+++||+|||+.   +|+||||||+|||++.++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~i~~qi~~~l~~lH~~---~iiHrDiKp~Nill~~~~  163 (294)
T PHA02882         92 GSFKRCRMYYRFILLEKLV-ENTKEIFKRI----KCKNKKLIKNIMKDMLTTLEYIHEH---GISHGDIKPENIMVDGNN  163 (294)
T ss_pred             eeEecCCceEEEEEEehhc-cCHHHHHHhh----ccCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCC
Confidence            76543    4578888874 4677666542    2357788899999999999999987   899999999999999999


Q ss_pred             cEEEEeecCCccccCCC--------cceeecccceEEeccccc
Q 005587          652 AVSVSDCGLAPLISSGS--------VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       652 ~~kl~DFGla~~~~~~~--------~~~~~~~~~~~~apE~~~  686 (689)
                      .++|+|||+|+.+....        ......++..|+|||+..
T Consensus       164 ~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~  206 (294)
T PHA02882        164 RGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHN  206 (294)
T ss_pred             cEEEEEcCCceeeccCCcccccccccccccCCCccccCHHHhC
Confidence            99999999998764321        111235788899999864

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=2e-21  Score=204.83  Aligned_cols=170  Identities=20%  Similarity=0.276  Sum_probs=147.1

Q ss_pred             cCCCccceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCC-CCCcceecEEEEeCCeEEEEEe
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR-HANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~-HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      ..|++.+.||+|+.+.||++...+.+.||+|++.....+.+....|..|+..|.+|+ |.+||.+++|-..++++|||||
T Consensus       361 ~~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmvmE  440 (677)
T KOG0596|consen  361 REYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMVME  440 (677)
T ss_pred             chhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEEee
Confidence            468889999999999999999888889999988777666777889999999999995 9999999999999999999999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      |= ..||.++|.....  ....| .++.|..||++|+.++|..   +|||.||||.|+|+-. |.+||+|||+|..+..+
T Consensus       441 ~G-d~DL~kiL~k~~~--~~~~~-~lk~ywkqML~aV~~IH~~---gIVHSDLKPANFLlVk-G~LKLIDFGIA~aI~~D  512 (677)
T KOG0596|consen  441 CG-DIDLNKILKKKKS--IDPDW-FLKFYWKQMLLAVKTIHQH---GIVHSDLKPANFLLVK-GRLKLIDFGIANAIQPD  512 (677)
T ss_pred             cc-cccHHHHHHhccC--CCchH-HHHHHHHHHHHHHHHHHHh---ceeecCCCcccEEEEe-eeEEeeeechhcccCcc
Confidence            76 5699999987542  22334 6777899999999999987   8999999999999975 58999999999999877


Q ss_pred             Ccc---eeecccceEEeccccc
Q 005587          668 SVS---QVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~~~---~~~~~~~~~~apE~~~  686 (689)
                      .++   ....||.-||+||-+-
T Consensus       513 TTsI~kdsQvGT~NYMsPEAl~  534 (677)
T KOG0596|consen  513 TTSIVKDSQVGTVNYMSPEALT  534 (677)
T ss_pred             ccceeeccccCcccccCHHHHh
Confidence            654   4467888899999873

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.85  E-value=8.5e-22  Score=211.86  Aligned_cols=168  Identities=25%  Similarity=0.368  Sum_probs=141.0

Q ss_pred             CccceEeecCCeEEEEEEeC--CCc--EEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          512 SQENLIGAGMLGSVYRAQLP--DGK--LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       512 ~~~~~iG~G~~G~Vy~~~~~--~g~--~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      .+.++||+|.||.|++|.|.  .|+  .||||.++...... ....|++|+.+|.+|+|||+|+|||...+ ....||||
T Consensus       113 ~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~-~mddflrEas~M~~L~H~hliRLyGvVl~-qp~mMV~E  190 (1039)
T KOG0199|consen  113 KLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNA-IMDDFLREASHMLKLQHPHLIRLYGVVLD-QPAMMVFE  190 (1039)
T ss_pred             HHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccch-hHHHHHHHHHHHHhccCcceeEEeeeecc-chhhHHhh
Confidence            44678999999999999875  343  68999997665432 57789999999999999999999999888 57789999


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCC
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~  667 (689)
                      +++.|+|.+.|+.  .....+.......|+.|||.||.||.++   ++|||||-..|||+.....+||+||||.+-+..+
T Consensus       191 LaplGSLldrLrk--a~~~~llv~~Lcdya~QiA~aM~YLesk---rlvHRDLAARNlllasprtVKI~DFGLmRaLg~n  265 (1039)
T KOG0199|consen  191 LAPLGSLLDRLRK--AKKAILLVSRLCDYAMQIAKAMQYLESK---RLVHRDLAARNLLLASPRTVKICDFGLMRALGEN  265 (1039)
T ss_pred             hcccchHHHHHhh--ccccceeHHHHHHHHHHHHHHHHHHhhh---hhhhhhhhhhhheecccceeeeecccceeccCCC
Confidence            9999999999987  2345677788899999999999999987   8999999999999999999999999999998776


Q ss_pred             Ccceeeccc---ce-EEeccccc
Q 005587          668 SVSQVSHNL---TI-MRAGGVTH  686 (689)
Q Consensus       668 ~~~~~~~~~---~~-~~apE~~~  686 (689)
                      +..+.....   ++ |-|||.++
T Consensus       266 ed~Yvm~p~rkvPfAWCaPEsLr  288 (1039)
T KOG0199|consen  266 EDMYVMAPQRKVPFAWCAPESLR  288 (1039)
T ss_pred             CcceEecCCCcCcccccCHhHhc
Confidence            644432222   22 55999885

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.85  E-value=9.5e-21  Score=185.51  Aligned_cols=143  Identities=20%  Similarity=0.176  Sum_probs=112.6

Q ss_pred             cceEeecCCeEEEEEEeCCCcEEEEEEeccccCChh------------------------hHHHHHHHHHHHhcCCCCCc
Q 005587          514 ENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQ------------------------KDDEFLELVNNIDRIRHANI  569 (689)
Q Consensus       514 ~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~------------------------~~~~~~~e~~~l~~l~HpnI  569 (689)
                      ...||+|+||+||+|...+|+.||||+++.......                        ....+..|.+.+.++.|++|
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   81 (190)
T cd05145           2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGV   81 (190)
T ss_pred             CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            468999999999999877899999999875421100                        01224578899999999998


Q ss_pred             ceecEEEEeCCeEEEEEeccCCCCHHHH-HhcCcccCCCCCHHHHHHHHHHHHHHHHHHHh-CCCCCcEEecccCCCeEe
Q 005587          570 VELKGYCAEHGQRLLIYEYCSNGTLQDM-LHSDDELKNNLSWNTRIRMALGAARALEYLHE-ICQPPIVHRNFKSANILL  647 (689)
Q Consensus       570 v~l~~~~~~~~~~~lV~Ey~~ggsL~~~-l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~-~~~~~iiHrDlKp~NILl  647 (689)
                      .....+....  .+|||||++|+++... +..     ..++......++.|++.++.|+|+ .   +|+||||||+|||+
T Consensus        82 ~~p~~~~~~~--~~lVmE~~~g~~~~~~~l~~-----~~~~~~~~~~i~~~l~~~l~~lH~~~---givHrDlkP~NIll  151 (190)
T cd05145          82 PVPEPILLKK--NVLVMEFIGDDGSPAPRLKD-----VPLEEEEAEELYEQVVEQMRRLYQEA---GLVHGDLSEYNILY  151 (190)
T ss_pred             CCceEEEecC--CEEEEEEecCCCchhhhhhh-----ccCCHHHHHHHHHHHHHHHHHHHHhC---CEecCCCChhhEEE
Confidence            6554444332  4899999998865433 332     346778899999999999999998 6   89999999999999


Q ss_pred             cCCCcEEEEeecCCccccCC
Q 005587          648 DDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       648 ~~~~~~kl~DFGla~~~~~~  667 (689)
                      + ++.++|+|||+|+.+...
T Consensus       152 ~-~~~~~liDFG~a~~~~~~  170 (190)
T cd05145         152 H-DGKPYIIDVSQAVELDHP  170 (190)
T ss_pred             E-CCCEEEEEcccceecCCC
Confidence            9 789999999999987654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.85  E-value=8.2e-21  Score=192.71  Aligned_cols=151  Identities=21%  Similarity=0.182  Sum_probs=126.3

Q ss_pred             cCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccCCCCHHHHH
Q 005587          520 GMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDML  598 (689)
Q Consensus       520 G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~ggsL~~~l  598 (689)
                      |.||.||+++. .+++.||+|.+....       .+.+|...+....||||+++++++...+..++||||++||+|.+++
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l   76 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSS-------EYSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHI   76 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchh-------hhhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHHH
Confidence            88999999965 578999999986532       2234445555667999999999999999999999999999999998


Q ss_pred             hcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCcceeecccce
Q 005587          599 HSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSHNLTI  678 (689)
Q Consensus       599 ~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~  678 (689)
                      ...    ..+++..+..++.|+++||+|||+.   +|+||||||+||+++.++.++++|||++..+......  ...+..
T Consensus        77 ~~~----~~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~~~~--~~~~~~  147 (237)
T cd05576          77 SKF----LNIPEECVKRWAAEMVVALDALHRE---GIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSCDG--EAVENM  147 (237)
T ss_pred             HHh----cCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEEcCCCCEEEecccchhcccccccc--CCcCcc
Confidence            753    3589999999999999999999987   8999999999999999999999999998776554322  234567


Q ss_pred             EEeccccc
Q 005587          679 MRAGGVTH  686 (689)
Q Consensus       679 ~~apE~~~  686 (689)
                      |+|||...
T Consensus       148 y~aPE~~~  155 (237)
T cd05576         148 YCAPEVGG  155 (237)
T ss_pred             ccCCcccC
Confidence            99999874

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.85  E-value=5.6e-21  Score=205.00  Aligned_cols=166  Identities=24%  Similarity=0.337  Sum_probs=135.9

Q ss_pred             cCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeC--------
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEH--------  579 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~--------  579 (689)
                      .+|.+.+.||+|+||.||+|.. .+|+.||+|.+.....  ...+.+.+|++++++++||||+++++++...        
T Consensus         5 ~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~--~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~   82 (342)
T cd07854           5 SRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDP--QSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDV   82 (342)
T ss_pred             cceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCC--chHHHHHHHHHHHHhcCCCcchhhHhhhccccccccccc
Confidence            5788899999999999999965 4689999999865432  3456788999999999999999999876653        


Q ss_pred             ------CeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecC-CCc
Q 005587          580 ------GQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDD-DLA  652 (689)
Q Consensus       580 ------~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~-~~~  652 (689)
                            ...++||||++ ++|.+++..     ..+++..++.++.|+++||.|||+.   +|+||||||+||+++. ++.
T Consensus        83 ~~~~~~~~~~lv~e~~~-~~L~~~~~~-----~~l~~~~~~~~~~qi~~aL~~LH~~---givH~dikp~Nili~~~~~~  153 (342)
T cd07854          83 GSLTELNSVYIVQEYME-TDLANVLEQ-----GPLSEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANVFINTEDLV  153 (342)
T ss_pred             ccccccceEEEEeeccc-ccHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCce
Confidence                  35789999997 589888763     3588999999999999999999987   8999999999999984 567


Q ss_pred             EEEEeecCCccccCCCc----ceeecccceEEecccc
Q 005587          653 VSVSDCGLAPLISSGSV----SQVSHNLTIMRAGGVT  685 (689)
Q Consensus       653 ~kl~DFGla~~~~~~~~----~~~~~~~~~~~apE~~  685 (689)
                      +||+|||+++.+.....    .....++..|+|||++
T Consensus       154 ~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  190 (342)
T cd07854         154 LKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLL  190 (342)
T ss_pred             EEECCcccceecCCccccccccccccccccccCHHHH
Confidence            89999999987643211    1123456789999976

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.85  E-value=2.2e-22  Score=216.03  Aligned_cols=169  Identities=27%  Similarity=0.393  Sum_probs=147.0

Q ss_pred             ccCCCccceEeecCCeEEEEEEe-CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      .++|+....+|.|+||.|||++. .+++..|||.++....  .+.....+|+-+++..+|||||.+++.|..++..|+.|
T Consensus        14 ~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~--dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwicM   91 (829)
T KOG0576|consen   14 QDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPG--DDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICM   91 (829)
T ss_pred             ccchhheeeecCCcccchhhhcccccCchhhheeeeccCC--ccccccccceeeeecCCCcChHHHHhhhhhhcCcEEEE
Confidence            36788889999999999999964 5799999999976543  23455678898999999999999999999999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      |||.||+|+++.+.    ...+++.++..+.+..++||.|||+.   +=+|||||-.|||+.+.|.+|++|||.+..+..
T Consensus        92 EycgggslQdiy~~----TgplselqiayvcRetl~gl~ylhs~---gk~hRdiKGanilltd~gDvklaDfgvsaqita  164 (829)
T KOG0576|consen   92 EYCGGGSLQDIYHV----TGPLSELQIAYVCRETLQGLKYLHSQ---GKIHRDIKGANILLTDEGDVKLADFGVSAQITA  164 (829)
T ss_pred             EecCCCcccceeee----cccchhHHHHHHHhhhhccchhhhcC---CcccccccccceeecccCceeecccCchhhhhh
Confidence            99999999998876    45788888999999999999999997   679999999999999999999999999988765


Q ss_pred             CC-cceeecccceEEecccc
Q 005587          667 GS-VSQVSHNLTIMRAGGVT  685 (689)
Q Consensus       667 ~~-~~~~~~~~~~~~apE~~  685 (689)
                      .- ....-.+++|+||||+.
T Consensus       165 ti~KrksfiGtpywmapEva  184 (829)
T KOG0576|consen  165 TIAKRKSFIGTPYWMAPEVA  184 (829)
T ss_pred             hhhhhhcccCCccccchhHH
Confidence            33 33446789999999986

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.84  E-value=2.3e-21  Score=211.90  Aligned_cols=167  Identities=23%  Similarity=0.402  Sum_probs=141.4

Q ss_pred             CccceEeecCCeEEEEEEe-CCC----cEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          512 SQENLIGAGMLGSVYRAQL-PDG----KLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       512 ~~~~~iG~G~~G~Vy~~~~-~~g----~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      ...++||+|+||+||+|.+ ..|    .+||+|++.... ......++++|+-+|.+++|||+++++++|.... ..||+
T Consensus       699 kk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t-~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~-~qlvt  776 (1177)
T KOG1025|consen  699 KKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFT-SPKASIELLDEALRMASLDHPNLLRLLGVCMLST-LQLVT  776 (1177)
T ss_pred             hhhceeccccceeEEeeeEecCCceecceeEEEEeeccC-CchhhHHHHHHHHHHhcCCCchHHHHhhhcccch-HHHHH
Confidence            3457899999999999954 444    468999886543 3456788999999999999999999999999876 88999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      +||++|.|.++++.++   ..+-.+..+.|..|||+||.|||.+   .++||||-..|||+.....+||.|||+|+++..
T Consensus       777 q~mP~G~LlDyvr~hr---~~igsq~lLnw~~QIAkgM~YLe~q---rlVHrdLaaRNVLVksP~hvkitdfgla~ll~~  850 (1177)
T KOG1025|consen  777 QLMPLGCLLDYVREHR---DNIGSQDLLNWCYQIAKGMKYLEEQ---RLVHRDLAARNVLVKSPNHVKITDFGLAKLLAP  850 (1177)
T ss_pred             HhcccchHHHHHHHhh---ccccHHHHHHHHHHHHHHHHHHHhc---chhhhhhhhhheeecCCCeEEEEecchhhccCc
Confidence            9999999999998753   4577788999999999999999987   899999999999999999999999999999988


Q ss_pred             CCcceeecccce---EEeccccc
Q 005587          667 GSVSQVSHNLTI---MRAGGVTH  686 (689)
Q Consensus       667 ~~~~~~~~~~~~---~~apE~~~  686 (689)
                      .+......+..+   +||=|.++
T Consensus       851 d~~ey~~~~gK~pikwmale~i~  873 (1177)
T KOG1025|consen  851 DEKEYSAPGGKVPIKWMALESIR  873 (1177)
T ss_pred             ccccccccccccCcHHHHHHHhh
Confidence            776655444433   66777764

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.83  E-value=1.5e-20  Score=190.93  Aligned_cols=169  Identities=19%  Similarity=0.295  Sum_probs=140.4

Q ss_pred             hccCCCccceEeecCCeEEEEEE-eCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCC--C----CcceecEEEEeC
Q 005587          507 YTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRH--A----NIVELKGYCAEH  579 (689)
Q Consensus       507 ~~~~f~~~~~iG~G~~G~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~H--p----nIv~l~~~~~~~  579 (689)
                      ..++|.+...+|+|+||.|-.+. .+.+..||||+++.-   ....+..+-|++++.++.+  |    -+|.+.+||.-+
T Consensus        87 l~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V---~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyr  163 (415)
T KOG0671|consen   87 LTNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNV---DKYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYR  163 (415)
T ss_pred             cccceehhhhhcCCcccceEEEeecCCCceehHHHHHHH---HHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhcc
Confidence            36789999999999999999994 456899999998643   2234556678999999842  2    278888999999


Q ss_pred             CeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecC----------
Q 005587          580 GQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDD----------  649 (689)
Q Consensus       580 ~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~----------  649 (689)
                      ++.++|+|.+ |-|+++++....  ..+++...+..|+.|+++++.|||+.   +++|-||||+|||+.+          
T Consensus       164 ghiCivfell-G~S~~dFlk~N~--y~~fpi~~ir~m~~QL~~sv~fLh~~---kl~HTDLKPENILfvss~~~~~~~~k  237 (415)
T KOG0671|consen  164 GHICIVFELL-GLSTFDFLKENN--YIPFPIDHIRHMGYQLLESVAFLHDL---KLTHTDLKPENILFVSSEYFKTYNPK  237 (415)
T ss_pred             CceEEEEecc-ChhHHHHhccCC--ccccchHHHHHHHHHHHHHHHHHHhc---ceeecCCChheEEEeccceEEEeccC
Confidence            9999999988 779999998755  45788899999999999999999998   8999999999999921          


Q ss_pred             ----------CCcEEEEeecCCccccCCCcceeecccceEEeccccc
Q 005587          650 ----------DLAVSVSDCGLAPLISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       650 ----------~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~apE~~~  686 (689)
                                +..+||+|||-|++-.+...  ...-|.+|+||||+.
T Consensus       238 ~~~~~~r~~ks~~I~vIDFGsAtf~~e~hs--~iVsTRHYRAPEViL  282 (415)
T KOG0671|consen  238 KKVCFIRPLKSTAIKVIDFGSATFDHEHHS--TIVSTRHYRAPEVIL  282 (415)
T ss_pred             CccceeccCCCcceEEEecCCcceeccCcc--eeeeccccCCchhee
Confidence                      23589999999999877663  356689999999984

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.82  E-value=3e-20  Score=210.63  Aligned_cols=170  Identities=19%  Similarity=0.227  Sum_probs=119.4

Q ss_pred             hccCCCccceEeecCCeEEEEEEeC-C----CcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEE------
Q 005587          507 YTNSFSQENLIGAGMLGSVYRAQLP-D----GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY------  575 (689)
Q Consensus       507 ~~~~f~~~~~iG~G~~G~Vy~~~~~-~----g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~------  575 (689)
                      ..++|++.+.||+|+||.||+|.+. +    +..||||++.....    .+.+..+  .+....+.+++.+...      
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~----~e~~~~e--~l~~~~~~~~~~~~~~~~~~~~  203 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGA----VEIWMNE--RVRRACPNSCADFVYGFLEPVS  203 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccch----hHHHHHH--HHHhhchhhHHHHHHhhhcccc
Confidence            3568999999999999999999764 4    68999998754321    1111111  1222223333322221      


Q ss_pred             EEeCCeEEEEEeccCCCCHHHHHhcCccc----------------CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEec
Q 005587          576 CAEHGQRLLIYEYCSNGTLQDMLHSDDEL----------------KNNLSWNTRIRMALGAARALEYLHEICQPPIVHRN  639 (689)
Q Consensus       576 ~~~~~~~~lV~Ey~~ggsL~~~l~~~~~~----------------~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrD  639 (689)
                      +...+..++||||+.+++|.+++......                .....+..+..|+.|+++||+|||+.   +|+|||
T Consensus       204 ~~~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~---gIiHRD  280 (566)
T PLN03225        204 SKKEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHST---GIVHRD  280 (566)
T ss_pred             cccCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHC---CEEeCc
Confidence            23556899999999999999998753210                00112334567999999999999987   899999


Q ss_pred             ccCCCeEecC-CCcEEEEeecCCccccCCC--cceeecccceEEecccc
Q 005587          640 FKSANILLDD-DLAVSVSDCGLAPLISSGS--VSQVSHNLTIMRAGGVT  685 (689)
Q Consensus       640 lKp~NILl~~-~~~~kl~DFGla~~~~~~~--~~~~~~~~~~~~apE~~  685 (689)
                      |||+|||+++ ++.+||+|||+|+.+..+.  ......+++.|+|||.+
T Consensus       281 LKP~NILl~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~  329 (566)
T PLN03225        281 VKPQNIIFSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQY  329 (566)
T ss_pred             CCHHHEEEeCCCCcEEEEeCCCccccccccccCCcccccCCCccChHHh
Confidence            9999999986 6799999999998765432  22334567889999965

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.82  E-value=1.7e-19  Score=180.22  Aligned_cols=168  Identities=33%  Similarity=0.497  Sum_probs=143.6

Q ss_pred             CCccceEeecCCeEEEEEEeCC-CcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEecc
Q 005587          511 FSQENLIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYC  589 (689)
Q Consensus       511 f~~~~~iG~G~~G~Vy~~~~~~-g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~  589 (689)
                      |.+.+.||+|++|.||++...+ ++.+|+|.+...... .....+.+|++.+.+++|+|++++++++...+..++++||+
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~-~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~   79 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTE-KQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYC   79 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccch-HHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEecc
Confidence            4567889999999999997764 899999998765432 24568889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC-
Q 005587          590 SNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS-  668 (689)
Q Consensus       590 ~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~-  668 (689)
                      ++++|.+++.....   .+++.....++.++++++.|||..   +++|+||+|+||+++.++.++|+|||++..+.... 
T Consensus        80 ~~~~L~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~~  153 (225)
T smart00221       80 EGGDLFDYLRKKGG---KLSEEEARFYLRQILEALEYLHSL---GIVHRDLKPENILLGMDGLVKLADFGLARFIHRDLA  153 (225)
T ss_pred             CCCCHHHHHHhccc---CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeeCceeeEecCccc
Confidence            99999999976321   178999999999999999999987   89999999999999999999999999999886653 


Q ss_pred             -cceeecccceEEecccc
Q 005587          669 -VSQVSHNLTIMRAGGVT  685 (689)
Q Consensus       669 -~~~~~~~~~~~~apE~~  685 (689)
                       ......+...|++||..
T Consensus       154 ~~~~~~~~~~~~~~pe~~  171 (225)
T smart00221      154 ALLKTVKGTPFYLAPEVL  171 (225)
T ss_pred             ccccceeccCCcCCHhHh
Confidence             22334556779999975

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.81  E-value=1.6e-19  Score=206.72  Aligned_cols=175  Identities=26%  Similarity=0.428  Sum_probs=144.2

Q ss_pred             cCCCccceEeecCCeEEEEEEeC----C----CcEEEEEEeccccCChhhHHHHHHHHHHHhcC-CCCCcceecEEEEeC
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP----D----GKLLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHANIVELKGYCAEH  579 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~----~----g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~~  579 (689)
                      ++..+.+.||+|.||.|++|...    .    ...||||.++..... ...+.+..|+++|..+ +|+||+.++|+|..+
T Consensus       296 ~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~-~~~~~~~~El~~m~~~g~H~niv~llG~~t~~  374 (609)
T KOG0200|consen  296 ENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASS-SEKKDLMSELNVLKELGKHPNIVNLLGACTQD  374 (609)
T ss_pred             hhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCc-HHHHHHHHHHHHHHHhcCCcchhhheeeeccC
Confidence            44456679999999999999642    1    357999998776554 6678899999999988 599999999999999


Q ss_pred             CeEEEEEeccCCCCHHHHHhcCc---cc-------C--CCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEe
Q 005587          580 GQRLLIYEYCSNGTLQDMLHSDD---EL-------K--NNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILL  647 (689)
Q Consensus       580 ~~~~lV~Ey~~ggsL~~~l~~~~---~~-------~--~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl  647 (689)
                      +..++|+||+..|+|.++++..+   ..       .  ..+.....+.++.|||.|++||++.   ++|||||-..|||+
T Consensus       375 ~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~---~~vHRDLAaRNVLi  451 (609)
T KOG0200|consen  375 GPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASV---PCVHRDLAARNVLI  451 (609)
T ss_pred             CceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhC---CccchhhhhhhEEe
Confidence            99999999999999999998765   11       1  2388899999999999999999998   79999999999999


Q ss_pred             cCCCcEEEEeecCCccccCCCcceee--cccce--EEecccccc
Q 005587          648 DDDLAVSVSDCGLAPLISSGSVSQVS--HNLTI--MRAGGVTHR  687 (689)
Q Consensus       648 ~~~~~~kl~DFGla~~~~~~~~~~~~--~~~~~--~~apE~~~~  687 (689)
                      .++..+||+|||+|+...........  .++..  +||||.+.+
T Consensus       452 ~~~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~  495 (609)
T KOG0200|consen  452 TKNKVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFD  495 (609)
T ss_pred             cCCCEEEEccccceeccCCCCceEecCCCCccceeecCHHHhcc
Confidence            99999999999999976554433321  11123  999999854

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.80  E-value=1.4e-19  Score=195.41  Aligned_cols=164  Identities=23%  Similarity=0.263  Sum_probs=135.0

Q ss_pred             hccCCCccceEeecCCeEEEEEE-eCCCcEEEEEEeccccCChhhHHHHHHHHHHHhc-CCCCCcceecEEEEeCCeEEE
Q 005587          507 YTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDR-IRHANIVELKGYCAEHGQRLL  584 (689)
Q Consensus       507 ~~~~f~~~~~iG~G~~G~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~-l~HpnIv~l~~~~~~~~~~~l  584 (689)
                      +++.|.....+|.|+|+.|-.+. ..+++..+||++.+....      -.+|+.++.. -.||||+++.+.+.+..+.|+
T Consensus       320 ~~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~~~------~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~  393 (612)
T KOG0603|consen  320 FTESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRADD------NQDEIPISLLVRDHPNIVKSHDVYEDGKEIYL  393 (612)
T ss_pred             cchhhccccccCCCCccceeeeeccccccchhheeccccccc------cccccchhhhhcCCCcceeecceecCCceeee
Confidence            45678888889999999999995 457899999999776322      2345544443 479999999999999999999


Q ss_pred             EEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEe-cCCCcEEEEeecCCcc
Q 005587          585 IYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILL-DDDLAVSVSDCGLAPL  663 (689)
Q Consensus       585 V~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl-~~~~~~kl~DFGla~~  663 (689)
                      |||++.||-+.+.+....     ....++..|+.+|+.|+.|||++   +||||||||+|||+ ++.+.++|+|||.++.
T Consensus       394 v~e~l~g~ell~ri~~~~-----~~~~e~~~w~~~lv~Av~~LH~~---gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~  465 (612)
T KOG0603|consen  394 VMELLDGGELLRRIRSKP-----EFCSEASQWAAELVSAVDYLHEQ---GVVHRDLKPGNILLDGSAGHLRLTYFGFWSE  465 (612)
T ss_pred             eehhccccHHHHHHHhcc-----hhHHHHHHHHHHHHHHHHHHHhc---CeeecCCChhheeecCCCCcEEEEEechhhh
Confidence            999999999988876532     22267778999999999999997   89999999999999 5899999999999999


Q ss_pred             ccCCCcceeecccceEEeccccc
Q 005587          664 ISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       664 ~~~~~~~~~~~~~~~~~apE~~~  686 (689)
                      +...  .....-+..|.|||+..
T Consensus       466 ~~~~--~~tp~~t~~y~APEvl~  486 (612)
T KOG0603|consen  466 LERS--CDTPALTLQYVAPEVLA  486 (612)
T ss_pred             Cchh--hcccchhhcccChhhhc
Confidence            8766  23345678899999984

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.80  E-value=8.5e-20  Score=201.17  Aligned_cols=165  Identities=27%  Similarity=0.356  Sum_probs=129.9

Q ss_pred             CCccceEeecCCeE-EEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcC-CCCCcceecEEEEeCCeEEEEEec
Q 005587          511 FSQENLIGAGMLGS-VYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       511 f~~~~~iG~G~~G~-Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      |...+++|.|+-|+ ||+|.+ +|+.||||++-...     .....+|+..|+.- +|||||++++.-.++...||..|.
T Consensus       511 ~~~~eilG~Gs~Gt~Vf~G~y-e~R~VAVKrll~e~-----~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalEL  584 (903)
T KOG1027|consen  511 FSPKEILGYGSNGTVVFRGVY-EGREVAVKRLLEEF-----FDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALEL  584 (903)
T ss_pred             eccHHHcccCCCCcEEEEEee-CCceehHHHHhhHh-----HHHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEehH
Confidence            44467889998875 799988 67899999985432     23456889888877 699999999888889999999999


Q ss_pred             cCCCCHHHHHhcC-cccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecC---C--CcEEEEeecCCc
Q 005587          589 CSNGTLQDMLHSD-DELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDD---D--LAVSVSDCGLAP  662 (689)
Q Consensus       589 ~~ggsL~~~l~~~-~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~---~--~~~kl~DFGla~  662 (689)
                      |. .+|.+++... ..... ..-...+.+..|++.||++||+.   +||||||||.||||+.   +  ..++|+|||+++
T Consensus       585 C~-~sL~dlie~~~~d~~~-~~~i~~~~~l~q~~~GlaHLHsl---~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsK  659 (903)
T KOG1027|consen  585 CA-CSLQDLIESSGLDVEM-QSDIDPISVLSQIASGLAHLHSL---KIVHRDLKPQNILISVPSADGTLRAKISDFGLSK  659 (903)
T ss_pred             hh-hhHHHHHhccccchhh-cccccHHHHHHHHHHHHHHHHhc---ccccccCCCceEEEEccCCCcceeEEeccccccc
Confidence            95 5999999874 11111 11033567788999999999997   8999999999999975   3  468999999999


Q ss_pred             cccCCCcce----eecccceEEeccccc
Q 005587          663 LISSGSVSQ----VSHNLTIMRAGGVTH  686 (689)
Q Consensus       663 ~~~~~~~~~----~~~~~~~~~apE~~~  686 (689)
                      .+..+..+.    ...|+.+|+|||.+.
T Consensus       660 kl~~~~sS~~r~s~~sGt~GW~APE~L~  687 (903)
T KOG1027|consen  660 KLAGGKSSFSRLSGGSGTSGWQAPEQLR  687 (903)
T ss_pred             ccCCCcchhhcccCCCCcccccCHHHHh
Confidence            997765432    346788999999984

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.79  E-value=1.6e-18  Score=170.27  Aligned_cols=163  Identities=34%  Similarity=0.546  Sum_probs=139.0

Q ss_pred             EeecCCeEEEEEEeCC-CcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccCCCCHH
Q 005587          517 IGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQ  595 (689)
Q Consensus       517 iG~G~~G~Vy~~~~~~-g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~ggsL~  595 (689)
                      ||+|.+|.||++...+ ++.+++|++....... ....+.+|++.++.++|++|+++++++......+++|||+.+++|.
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~-~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~   79 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSS-LLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLK   79 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchh-HHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcHH
Confidence            6899999999997754 8999999987543221 3467899999999999999999999999999999999999999999


Q ss_pred             HHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecC-CCcEEEEeecCCccccCCC-cceee
Q 005587          596 DMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDD-DLAVSVSDCGLAPLISSGS-VSQVS  673 (689)
Q Consensus       596 ~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~-~~~~kl~DFGla~~~~~~~-~~~~~  673 (689)
                      +++....   ..+++..+..++.++++++.|||+.   +++|+||+|.||+++. ++.++|+|||.+....... .....
T Consensus        80 ~~~~~~~---~~~~~~~~~~~~~~l~~~l~~lh~~---~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~  153 (215)
T cd00180          80 DLLKENE---GKLSEDEILRILLQILEGLEYLHSN---GIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKTI  153 (215)
T ss_pred             HHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcchhhcc
Confidence            9987531   3588999999999999999999987   8999999999999999 8999999999998776543 12234


Q ss_pred             cccceEEeccccc
Q 005587          674 HNLTIMRAGGVTH  686 (689)
Q Consensus       674 ~~~~~~~apE~~~  686 (689)
                      .....|++||.+.
T Consensus       154 ~~~~~~~~pe~~~  166 (215)
T cd00180         154 VGTPAYMAPEVLL  166 (215)
T ss_pred             cCCCCccChhHhc
Confidence            5667799999874

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>PRK10345 hypothetical protein; Provisional

Probab=99.79  E-value=9.5e-19  Score=172.70  Aligned_cols=138  Identities=19%  Similarity=0.248  Sum_probs=106.4

Q ss_pred             CccceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcC-----CCCCcceecEEEEeCC---eEE
Q 005587          512 SQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI-----RHANIVELKGYCAEHG---QRL  583 (689)
Q Consensus       512 ~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l-----~HpnIv~l~~~~~~~~---~~~  583 (689)
                      ...+.||+|+||.||. ...++.. +||++.....  ...+.+.+|+++++.+     .||||++++|++++..   ..+
T Consensus         5 ~~~~~LG~G~~~~Vy~-hp~~~~k-~IKv~~~~~~--~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~   80 (210)
T PRK10345          5 SEQSPLGTGRHRKCYA-HPEDAQR-CIKIVYHRGD--GGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVY   80 (210)
T ss_pred             CCcceecCCCceEEEE-CCCCcCe-EEEEEecccc--chHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEE
Confidence            3457899999999996 3334444 7998865432  2456789999999999     5799999999999863   444


Q ss_pred             -EEEec--cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHH-HHHHhCCCCCcEEecccCCCeEecC----CCcEEE
Q 005587          584 -LIYEY--CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARAL-EYLHEICQPPIVHRNFKSANILLDD----DLAVSV  655 (689)
Q Consensus       584 -lV~Ey--~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL-~yLH~~~~~~iiHrDlKp~NILl~~----~~~~kl  655 (689)
                       +||||  +.+|+|.+++...     .+++.  ..++.|++.++ +|||+.   +|+||||||+|||++.    ++.++|
T Consensus        81 ~~I~e~~G~~~~tL~~~l~~~-----~~~e~--~~~~~~~L~~l~~yLh~~---~IvhrDlKp~NILl~~~~~~~~~~~L  150 (210)
T PRK10345         81 DVIADFDGKPSITLTEFAEQC-----RYEED--VAQLRQLLKKLKRYLLDN---RIVTMELKPQNILCQRISESEVIPVV  150 (210)
T ss_pred             EEEecCCCCcchhHHHHHHcc-----cccHh--HHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEeccCCCCCcEEE
Confidence             78999  5589999999652     24444  35678888888 999998   8999999999999974    347999


Q ss_pred             Ee-ecCCcc
Q 005587          656 SD-CGLAPL  663 (689)
Q Consensus       656 ~D-FGla~~  663 (689)
                      +| ||...+
T Consensus       151 iDg~G~~~~  159 (210)
T PRK10345        151 CDNIGESTF  159 (210)
T ss_pred             EECCCCcce
Confidence            99 555444

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.79  E-value=7.4e-19  Score=177.23  Aligned_cols=158  Identities=32%  Similarity=0.472  Sum_probs=136.6

Q ss_pred             CCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccCCCCHHHHHh
Q 005587          521 MLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLH  599 (689)
Q Consensus       521 ~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~ggsL~~~l~  599 (689)
                      +||.||+|... +|+.+|+|++........ .+.+.+|++.+++++|+||+++++++......+++|||+.+++|.+++.
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~-~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~   79 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKK-RERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLK   79 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccH-HHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHH
Confidence            58999999776 589999999875533221 5788999999999999999999999999999999999999999999987


Q ss_pred             cCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCcceeecccceE
Q 005587          600 SDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSHNLTIM  679 (689)
Q Consensus       600 ~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~  679 (689)
                      ...    .+++..+..++.++++++.|||..   +|+|+||+|+||++++++.++|+|||++.............+...|
T Consensus        80 ~~~----~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~  152 (244)
T smart00220       80 KRG----RLSEDEARFYARQILSALEYLHSN---GIIHRDLKPENILLDEDGHVKLADFGLARQLDPGGLLTTFVGTPEY  152 (244)
T ss_pred             hcc----CCCHHHHHHHHHHHHHHHHHHHHc---CeecCCcCHHHeEECCCCcEEEccccceeeeccccccccccCCcCC
Confidence            532    388999999999999999999987   8999999999999999999999999999988765444445567789


Q ss_pred             Eeccccc
Q 005587          680 RAGGVTH  686 (689)
Q Consensus       680 ~apE~~~  686 (689)
                      ++||...
T Consensus       153 ~~pE~~~  159 (244)
T smart00220      153 MAPEVLL  159 (244)
T ss_pred             CCHHHHc
Confidence            9999763

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.79  E-value=6.6e-20  Score=182.30  Aligned_cols=166  Identities=22%  Similarity=0.273  Sum_probs=136.8

Q ss_pred             CCCccceEeecCCeEEEEE-EeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCC------eE
Q 005587          510 SFSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHG------QR  582 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~-~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~------~~  582 (689)
                      +|.....+|.|.- .|..+ ..-.++.||+|++..........+...+|...+..+.|+||++++.+|.-..      +.
T Consensus        18 Ry~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e~   96 (369)
T KOG0665|consen   18 RYVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQEV   96 (369)
T ss_pred             eeeeecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHhH
Confidence            4555667788877 45555 3346899999998766554555677789999999999999999999987543      57


Q ss_pred             EEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCc
Q 005587          583 LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAP  662 (689)
Q Consensus       583 ~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~  662 (689)
                      |+|||||. ++|...++-      .++-.....|..|++.|+.|||+.   +|+||||||+||++..+..+||.|||+|+
T Consensus        97 y~v~e~m~-~nl~~vi~~------elDH~tis~i~yq~~~~ik~lhs~---~IihRdLkPsnivv~~~~~lKi~dfg~ar  166 (369)
T KOG0665|consen   97 YLVMELMD-ANLCQVILM------ELDHETISYILYQMLCGIKHLHSA---GIIHRDLKPSNIVVNSDCTLKILDFGLAR  166 (369)
T ss_pred             HHHHHhhh-hHHHHHHHH------hcchHHHHHHHHHHHHHHHHHHhc---ceeecccCcccceecchhheeeccchhhc
Confidence            99999995 599988862      356678889999999999999998   89999999999999999999999999999


Q ss_pred             cccCCCcceeecccceEEeccccc
Q 005587          663 LISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       663 ~~~~~~~~~~~~~~~~~~apE~~~  686 (689)
                      .-...-.-.....+.+|+|||++.
T Consensus       167 ~e~~~~~mtpyVvtRyyrapevil  190 (369)
T KOG0665|consen  167 TEDTDFMMTPYVVTRYYRAPEVIL  190 (369)
T ss_pred             ccCcccccCchhheeeccCchhee
Confidence            876664555567889999999984

>PLN03150 hypothetical protein; Provisional

Probab=99.78  E-value=3.1e-18  Score=196.41  Aligned_cols=137  Identities=35%  Similarity=0.629  Sum_probs=93.1

Q ss_pred             cccCCHhhHHHHHHHHHHhCCCCCCCCCCCCCCCCC---CCCccEEeeCC------CeEEEEecCCCCCcccCccccCCC
Q 005587           33 CAVTNPNDVAAINSLYAALGSPVLPGWVASAGDPCG---ESWQGVQCNAS------DIIAIILNGANLGGELGENLGAFS  103 (689)
Q Consensus        33 ~~~~~~~d~~aL~~~~~~l~~~~l~~W~~~~~~~C~---~~w~gv~C~~~------~l~~L~L~~n~l~g~~p~~l~~l~  103 (689)
                      ...+.++|++||+.+|+.++++...+|.   +|+|.   +.|.||.|+..      .++.|+|++|+|.|.+|+.|+.|+
T Consensus       366 ~~~t~~~~~~aL~~~k~~~~~~~~~~W~---g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~  442 (623)
T PLN03150        366 ESKTLLEEVSALQTLKSSLGLPLRFGWN---GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLR  442 (623)
T ss_pred             ccccCchHHHHHHHHHHhcCCcccCCCC---CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCC
Confidence            3456788999999999999876445785   35663   47999999632      266666666666666666666666


Q ss_pred             CCCEEEccCCcCCCCCCCccccccccccccCccCCCCCCcccCCCCCccEEEccCCcCCCCCChhhcCCCCCCEEEccCC
Q 005587          104 SIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSN  183 (689)
Q Consensus       104 ~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N  183 (689)
                      +|+.|+|++|+|+|                      .+|..++.+++|+.|+|++|+|+|.+|..+++|++|+.|+|++|
T Consensus       443 ~L~~L~Ls~N~l~g----------------------~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N  500 (623)
T PLN03150        443 HLQSINLSGNSIRG----------------------NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN  500 (623)
T ss_pred             CCCEEECCCCcccC----------------------cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence            66666665555543                      44445666666666777777666666666666666666666666


Q ss_pred             CCCCCCCCCcc
Q 005587          184 NLSGELPPSLE  194 (689)
Q Consensus       184 ~l~g~~p~~~~  194 (689)
                      +|+|.+|..++
T Consensus       501 ~l~g~iP~~l~  511 (623)
T PLN03150        501 SLSGRVPAALG  511 (623)
T ss_pred             cccccCChHHh
Confidence            66666666554

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.76  E-value=6.3e-19  Score=171.28  Aligned_cols=166  Identities=16%  Similarity=0.297  Sum_probs=130.7

Q ss_pred             hccCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcC-CCCCcceecEE-EEeCCeEE
Q 005587          507 YTNSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHANIVELKGY-CAEHGQRL  583 (689)
Q Consensus       507 ~~~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~-~~~~~~~~  583 (689)
                      ..+.|.+.+.+|+|.||.+-+++++ +...+++|.+....   ...++|.+|...--.| .|.||+.-|+. |+..+.+.
T Consensus        22 l~d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~---tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~Yv   98 (378)
T KOG1345|consen   22 LEDVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQ---TTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYV   98 (378)
T ss_pred             hhhhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcch---hhHHHHHHHhccceeeccchhhhHHHHHHhhcCceEE
Confidence            3467889999999999999999765 57789999987653   4467888887654444 58999987654 67788899


Q ss_pred             EEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEec--CCCcEEEEeecCC
Q 005587          584 LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLD--DDLAVSVSDCGLA  661 (689)
Q Consensus       584 lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~--~~~~~kl~DFGla  661 (689)
                      ++|||++-|+|.+-+..     ..+-+....+++.|++.|++|+|+.   ++||||||.+||||-  +...+||||||+.
T Consensus        99 F~qE~aP~gdL~snv~~-----~GigE~~~K~v~~ql~SAi~fMHsk---nlVHRdlK~eNiLif~~df~rvKlcDFG~t  170 (378)
T KOG1345|consen   99 FVQEFAPRGDLRSNVEA-----AGIGEANTKKVFAQLLSAIEFMHSK---NLVHRDLKAENILIFDADFYRVKLCDFGLT  170 (378)
T ss_pred             EeeccCccchhhhhcCc-----ccccHHHHHHHHHHHHHHHHHhhcc---chhhcccccceEEEecCCccEEEeeecccc
Confidence            99999999999887654     3467788899999999999999997   899999999999993  3448999999999


Q ss_pred             ccccCCCcceeecccceEEecccc
Q 005587          662 PLISSGSVSQVSHNLTIMRAGGVT  685 (689)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~apE~~  685 (689)
                      +....  .-...-....|-+||+.
T Consensus       171 ~k~g~--tV~~~~~~~~y~~pe~~  192 (378)
T KOG1345|consen  171 RKVGT--TVKYLEYVNNYHAPELC  192 (378)
T ss_pred             cccCc--eehhhhhhcccCCcHHH
Confidence            86532  22222334446677764

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.76  E-value=4e-18  Score=170.09  Aligned_cols=162  Identities=17%  Similarity=0.250  Sum_probs=132.9

Q ss_pred             cCCCccceEeecCCeEEEEE-EeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcC-CCCCcceecEEEEeCCeEEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~-~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      -+|.++++||+|+||.++.| .+-+++.||||.-....    +..++..|.+..+.| ..++|..++-|..+..+-.|||
T Consensus        28 ~hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS----~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVi  103 (449)
T KOG1165|consen   28 PHYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKS----EAPQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVI  103 (449)
T ss_pred             ccceeccccccCcceeeecccccccCceEEEEeccccC----CcchHHHHHHHHHHHcCCCCCCceeeeccccchhhhhh
Confidence            47899999999999999999 46789999999865432    345666777777776 4689999988888888889999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCC-----CcEEEEeecCC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDD-----LAVSVSDCGLA  661 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~-----~~~kl~DFGla  661 (689)
                      |++ |.||+|++.-.   ...++.+++..||.|++.-++|+|+.   .+|.|||||+|+||...     ..+.|+|||+|
T Consensus       104 dLL-GPSLEDLFD~C---gR~FSvKTV~miA~Qmi~rie~vH~k---~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmA  176 (449)
T KOG1165|consen  104 DLL-GPSLEDLFDLC---GRRFSVKTVAMIAKQMITRIEYVHEK---DLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMA  176 (449)
T ss_pred             hhh-CcCHHHHHHHh---cCcccHHhHHHHHHHHHHHHHHHHhc---ceeecccCccceeecCCCCCCCceEEEEeccch
Confidence            988 88999998753   56799999999999999999999998   79999999999999643     35899999999


Q ss_pred             ccccCCCccee--------ecccceEEe
Q 005587          662 PLISSGSVSQV--------SHNLTIMRA  681 (689)
Q Consensus       662 ~~~~~~~~~~~--------~~~~~~~~a  681 (689)
                      +.+.+..+.++        ..+|.-||+
T Consensus       177 K~YrDp~TkqHIPYrE~KSLsGTARYMS  204 (449)
T KOG1165|consen  177 KEYRDPKTKQHIPYREHKSLSGTARYMS  204 (449)
T ss_pred             hhhcCccccccCccccccccccceeeeE
Confidence            99877654432        345555665

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.76  E-value=2.6e-18  Score=164.45  Aligned_cols=149  Identities=21%  Similarity=0.340  Sum_probs=126.4

Q ss_pred             cCCCccceEeecCCeEEEEE-EeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCC-CCcceecEEEEeCCeEEEEE
Q 005587          509 NSFSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRH-ANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~-~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~H-pnIv~l~~~~~~~~~~~lV~  586 (689)
                      ..|.+.++||.|+||.+|.| ...+|..||||.-....    .-.++..|.++.+.|+| ..|..+..|..+..+-.+||
T Consensus        15 gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a----~hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynvlVM   90 (341)
T KOG1163|consen   15 GKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKA----KHPQLLYESKVYRILQGGVGIPHIRHYGTEKDYNVLVM   90 (341)
T ss_pred             cceEEEEeecCCchhheeeeeeccCCceEEEEeecccC----CCcchhHHHHHHHHhccCCCCchhhhhccccccceeee
Confidence            57899999999999999999 56789999999865432    23456778888888875 67888888889999999999


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEec---CCCcEEEEeecCCcc
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLD---DDLAVSVSDCGLAPL  663 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~---~~~~~kl~DFGla~~  663 (689)
                      |.+ |.||++++.-   +...++..+++..+-|++.-++|+|..   +.|||||||+|+|..   ....+.++|||||+.
T Consensus        91 dLL-GPsLEdLfnf---C~R~ftmkTvLMLaDQml~RiEyvH~r---~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKk  163 (341)
T KOG1163|consen   91 DLL-GPSLEDLFNF---CSRRFTMKTVLMLADQMLSRIEYVHLR---NFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKK  163 (341)
T ss_pred             ecc-CccHHHHHHH---HhhhhhHHhHHHHHHHHHHHHHHHHhh---ccccccCCccceeeccccccceEEEEeccchhh
Confidence            988 8899999864   346788999999999999999999988   799999999999986   345789999999998


Q ss_pred             ccCCC
Q 005587          664 ISSGS  668 (689)
Q Consensus       664 ~~~~~  668 (689)
                      +.+-.
T Consensus       164 y~d~~  168 (341)
T KOG1163|consen  164 YRDIR  168 (341)
T ss_pred             hcccc
Confidence            86544

>smart00090 RIO RIO-like kinase

Probab=99.75  E-value=4.4e-18  Score=172.00  Aligned_cols=147  Identities=17%  Similarity=0.126  Sum_probs=112.6

Q ss_pred             CCCccceEeecCCeEEEEEE--eCCCcEEEEEEeccccCCh--------------------h--hHHHHHHHHHHHhcCC
Q 005587          510 SFSQENLIGAGMLGSVYRAQ--LPDGKLLAVKKLDKRASSQ--------------------Q--KDDEFLELVNNIDRIR  565 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~--~~~g~~vAvK~l~~~~~~~--------------------~--~~~~~~~e~~~l~~l~  565 (689)
                      -|.+.+.||+|+||.||+|.  ..+|+.||||++.......                    .  ....+..|++.+.++.
T Consensus        29 ~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~  108 (237)
T smart00090       29 LSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLY  108 (237)
T ss_pred             hHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            47888999999999999997  5689999999986432100                    0  1133568999999997


Q ss_pred             CCC--cceecEEEEeCCeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCC-cEEecccC
Q 005587          566 HAN--IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPP-IVHRNFKS  642 (689)
Q Consensus       566 Hpn--Iv~l~~~~~~~~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~-iiHrDlKp  642 (689)
                      +..  +.+++++    ...++||||+.|++|......    ...+.......++.|++.++.|||..   + |+||||||
T Consensus       109 ~~~i~~p~~~~~----~~~~lV~E~~~g~~L~~~~~~----~~~~~~~~~~~i~~qi~~~l~~LH~~---g~iiH~Dikp  177 (237)
T smart00090      109 EAGVPVPKPIAW----RRNVLVMEFIGGDGLPAPRLK----DVEPEEEEEFELYDDILEEMRKLYKE---GELVHGDLSE  177 (237)
T ss_pred             hcCCCCCeeeEe----cCceEEEEEecCCcccccccc----cCCcchHHHHHHHHHHHHHHHHHHhc---CCEEeCCCCh
Confidence            633  3333332    235899999999888765422    12345556788999999999999987   7 99999999


Q ss_pred             CCeEecCCCcEEEEeecCCccccCCC
Q 005587          643 ANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       643 ~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      +||+++ ++.++|+|||.|.......
T Consensus       178 ~NIli~-~~~i~LiDFg~a~~~~~~~  202 (237)
T smart00090      178 YNILVH-DGKVVIIDVSQSVELDHPM  202 (237)
T ss_pred             hhEEEE-CCCEEEEEChhhhccCCcc
Confidence            999999 8899999999999766544

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.75  E-value=1.8e-18  Score=181.12  Aligned_cols=173  Identities=17%  Similarity=0.244  Sum_probs=142.3

Q ss_pred             hhhccCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCC------CCCcceecEEEE
Q 005587          505 QQYTNSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR------HANIVELKGYCA  577 (689)
Q Consensus       505 ~~~~~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~------HpnIv~l~~~~~  577 (689)
                      +.....|.+....|+|-|++|.+|... .|..||||+|....   ...+.=+.|+++|++|.      --++++++..|.
T Consensus       428 E~LD~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE---~M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~  504 (752)
T KOG0670|consen  428 ELLDSRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNE---VMHKTGLKELEILKKLNDADPEDKFHCLRLFRHFK  504 (752)
T ss_pred             hhhcceeEEEeccccceeeeeeeccccCCCCeeEEEEeecch---HHhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhh
Confidence            344567888888899999999999654 58899999997542   22334467899999985      347899999999


Q ss_pred             eCCeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCC-cEEEE
Q 005587          578 EHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDL-AVSVS  656 (689)
Q Consensus       578 ~~~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~-~~kl~  656 (689)
                      ..++++||+|-+ .-+|.++|+..+. .-.+....+..|+.|+.-||..|...   +|+|.||||+|||+++.. .+|||
T Consensus       505 hknHLClVFE~L-slNLRevLKKyG~-nvGL~ikaVRsYaqQLflALklLK~c---~vlHaDIKPDNiLVNE~k~iLKLC  579 (752)
T KOG0670|consen  505 HKNHLCLVFEPL-SLNLREVLKKYGR-NVGLHIKAVRSYAQQLFLALKLLKKC---GVLHADIKPDNILVNESKNILKLC  579 (752)
T ss_pred             hcceeEEEehhh-hchHHHHHHHhCc-ccceeehHHHHHHHHHHHHHHHHHhc---CeeecccCccceEeccCcceeeec
Confidence            999999999988 4599999987543 45678889999999999999999987   899999999999999754 67999


Q ss_pred             eecCCccccCCCcceeecccceEEeccccc
Q 005587          657 DCGLAPLISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       657 DFGla~~~~~~~~~~~~~~~~~~~apE~~~  686 (689)
                      |||-|-+..+..+... ....+|+||||+.
T Consensus       580 DfGSA~~~~eneitPY-LVSRFYRaPEIiL  608 (752)
T KOG0670|consen  580 DFGSASFASENEITPY-LVSRFYRAPEIIL  608 (752)
T ss_pred             cCccccccccccccHH-HHHHhccCcceee
Confidence            9999999988775542 3567899999994

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.75  E-value=2e-20  Score=170.02  Aligned_cols=172  Identities=27%  Similarity=0.479  Sum_probs=153.4

Q ss_pred             eCCCeEEEEecCCCCCcccCccccCCCCCCEEEccCCcCCCCCCCccc--cccccccccCccCCCCCCcccCCCCCccEE
Q 005587           77 NASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPSSLATLTLLTDM  154 (689)
Q Consensus        77 ~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  154 (689)
                      +..+++.|.|++|.|+ .+|+.+..|.+|+.|++++|+|+ .+|..+.  ++|+.|+++-|++. .+|..|+.++.|+.|
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            3468899999999998 67889999999999999999999 5565665  89999999999999 899999999999999


Q ss_pred             EccCCcCCC-CCChhhcCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccccccccccCCcc-ccccccccccCC
Q 005587          155 SLNNNLLSG-EIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP-LRDLNIENNLFS  232 (689)
Q Consensus       155 ~Ls~N~l~g-~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~Ls~N~l~  232 (689)
                      ||.+|++.. .+|..|..|..|+.|+|+.|.+. .+|..+++|++|+.|.+.+|.|-..+..++.+. |++|.+++|+++
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee
Confidence            999999974 69999999999999999999998 899999999999999999999999998888887 999999999999


Q ss_pred             CCCccccCCCC------CccccCCcCC
Q 005587          233 GPIPEKMLQIP------NFRKDGNPFN  253 (689)
Q Consensus       233 g~ip~~l~~l~------~l~~~~N~~~  253 (689)
                       .+|.+++++.      .++...|||-
T Consensus       187 -vlppel~~l~l~~~k~v~r~E~NPwv  212 (264)
T KOG0617|consen  187 -VLPPELANLDLVGNKQVMRMEENPWV  212 (264)
T ss_pred             -ecChhhhhhhhhhhHHHHhhhhCCCC
Confidence             7787776654      2456777774

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.75  E-value=1.7e-17  Score=160.91  Aligned_cols=137  Identities=15%  Similarity=0.109  Sum_probs=108.2

Q ss_pred             ccceEeecCCeEEEEEEeCCCcEEEEEEeccccCC--hhhHHHHHHHHHHHhcCC-CCCcceecEEEEeCCeEEEEEecc
Q 005587          513 QENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASS--QQKDDEFLELVNNIDRIR-HANIVELKGYCAEHGQRLLIYEYC  589 (689)
Q Consensus       513 ~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~--~~~~~~~~~e~~~l~~l~-HpnIv~l~~~~~~~~~~~lV~Ey~  589 (689)
                      ....|++|+||+||.+.. .+..++.+.+......  ......+.+|+++|+++. |++|++++++    +..+++|||+
T Consensus         6 ~~~~l~~~~f~~v~~~~~-~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~~lvmeyI   80 (218)
T PRK12274          6 VNEPLKSDTFGRILLVRG-GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DGRHLDRSYL   80 (218)
T ss_pred             cceeecCCCcceEEEeec-CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCEEEEEeee
Confidence            357899999999998766 6778887777544321  112235789999999995 5889999886    4579999999


Q ss_pred             CCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecc-cCCCeEecCCCcEEEEeecCCccccCCC
Q 005587          590 SNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNF-KSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       590 ~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDl-Kp~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      .|.+|.+.+..           ....++.|++++|+|+|..   +|+|||| ||+|||++.++.++|+|||+|.......
T Consensus        81 ~G~~L~~~~~~-----------~~~~~~~qi~~~L~~lH~~---GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~~~~  146 (218)
T PRK12274         81 AGAAMYQRPPR-----------GDLAYFRAARRLLQQLHRC---GVAHNDLAKEANWLVQEDGSPAVIDFQLAVRGNPRA  146 (218)
T ss_pred             cCccHHhhhhh-----------hhHHHHHHHHHHHHHHHHC---cCccCCCCCcceEEEcCCCCEEEEECCCceecCCcc
Confidence            99999765421           1134678999999999998   8999999 7999999999999999999999665443

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.74  E-value=2e-17  Score=164.63  Aligned_cols=138  Identities=19%  Similarity=0.304  Sum_probs=115.3

Q ss_pred             ceEeecCCeEEEEEEeCCCcEEEEEEeccccCCh------hhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          515 NLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQ------QKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~------~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      +.||+|++|.||+|.+ +|..|++|+........      .....+.+|++++..++|++|+....++...+..++||||
T Consensus         2 ~~l~~G~~~~vy~~~~-~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~   80 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF-LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVMEY   80 (211)
T ss_pred             cccccCceEEEEEEee-CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEEE
Confidence            5789999999999987 67789999765332111      1234678899999999999998888888778888999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcccc
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS  665 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~  665 (689)
                      ++|++|.+++...       .+ .+..++.+++.+|.++|+.   +++|+|++|+|||++ ++.++|+|||+++...
T Consensus        81 ~~G~~L~~~~~~~-------~~-~~~~i~~~i~~~l~~lH~~---~i~H~Dl~p~Nil~~-~~~~~liDf~~a~~~~  145 (211)
T PRK14879         81 IEGEPLKDLINSN-------GM-EELELSREIGRLVGKLHSA---GIIHGDLTTSNMILS-GGKIYLIDFGLAEFSK  145 (211)
T ss_pred             eCCcCHHHHHHhc-------cH-HHHHHHHHHHHHHHHHHhC---CcccCCCCcccEEEE-CCCEEEEECCcccCCC
Confidence            9999999998642       12 7788999999999999987   899999999999999 7889999999998743

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.74  E-value=1.6e-17  Score=164.67  Aligned_cols=142  Identities=15%  Similarity=0.176  Sum_probs=115.8

Q ss_pred             hccCCCccceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhh-H------HHHHHHHHHHhcCCCCCcceecEEEEeC
Q 005587          507 YTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQK-D------DEFLELVNNIDRIRHANIVELKGYCAEH  579 (689)
Q Consensus       507 ~~~~f~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~-~------~~~~~e~~~l~~l~HpnIv~l~~~~~~~  579 (689)
                      ..++|+..+++|+|+||.||.+.. ++..+|||.+......... .      +.+.+|++.+.+++|++|..+.+++...
T Consensus        29 l~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~  107 (232)
T PRK10359         29 LSYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLA  107 (232)
T ss_pred             hhCceEEEEEecCCCceEEEEEec-CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeec
Confidence            357899999999999999999866 5778999999765432221 1      2267899999999999999999887643


Q ss_pred             --------CeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCC
Q 005587          580 --------GQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDL  651 (689)
Q Consensus       580 --------~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~  651 (689)
                              +..+|||||++|.+|.++..        ++.    ....+++.+|..+|..   +++|||+||+||++++++
T Consensus       108 ~~~~~~~~~~~~lvmEyi~G~tL~~~~~--------~~~----~~~~~i~~~l~~lH~~---gi~H~Dikp~Nili~~~g  172 (232)
T PRK10359        108 ERKTLRYAHTYIMLIEYIEGVELNDMPE--------ISE----DVKAKIKASIESLHQH---GMVSGDPHKGNFIVSKNG  172 (232)
T ss_pred             ccccccccCCeEEEEEEECCccHHHhhh--------ccH----HHHHHHHHHHHHHHHc---CCccCCCChHHEEEeCCC
Confidence                    35789999999999988732        222    2456899999999987   899999999999999988


Q ss_pred             cEEEEeecCCcccc
Q 005587          652 AVSVSDCGLAPLIS  665 (689)
Q Consensus       652 ~~kl~DFGla~~~~  665 (689)
                       ++|+|||..+...
T Consensus       173 -i~liDfg~~~~~~  185 (232)
T PRK10359        173 -LRIIDLSGKRCTA  185 (232)
T ss_pred             -EEEEECCCccccc
Confidence             9999999988664

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.73  E-value=1.8e-17  Score=163.52  Aligned_cols=142  Identities=18%  Similarity=0.129  Sum_probs=110.3

Q ss_pred             cCCCccceEeecCCeEEEEEEeCCCcEEEEEEeccccCCh--------------------hhHHHHHHHHHHHhcCCCCC
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQ--------------------QKDDEFLELVNNIDRIRHAN  568 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~--------------------~~~~~~~~e~~~l~~l~Hpn  568 (689)
                      .-|.+.+.||+|+||.||+|..++|+.||||++.......                    .....+..|...+.++.|++
T Consensus        15 ~~~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~   94 (198)
T cd05144          15 VVESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEG   94 (198)
T ss_pred             chhhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcC
Confidence            3477789999999999999988889999999876432110                    01123567888888888874


Q ss_pred             --cceecEEEEeCCeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeE
Q 005587          569 --IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANIL  646 (689)
Q Consensus       569 --Iv~l~~~~~~~~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NIL  646 (689)
                        ++..++    .+..++||||++|++|.++...          .....++.++++++.++|+.   +|+||||||+||+
T Consensus        95 i~v~~~~~----~~~~~lv~e~~~g~~L~~~~~~----------~~~~~~~~~i~~~l~~lh~~---gi~H~Dl~p~Nil  157 (198)
T cd05144          95 FPVPKPID----WNRHAVVMEYIDGVELYRVRVL----------EDPEEVLDEILEEIVKAYKH---GIIHGDLSEFNIL  157 (198)
T ss_pred             CCCCceee----cCCceEEEEEeCCcchhhcccc----------ccHHHHHHHHHHHHHHHHHC---CCCcCCCCcccEE
Confidence              344433    2456899999999999765421          23457888999999999987   8999999999999


Q ss_pred             ecCCCcEEEEeecCCccccCC
Q 005587          647 LDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       647 l~~~~~~kl~DFGla~~~~~~  667 (689)
                      +++++.++|+|||++......
T Consensus       158 l~~~~~~~liDfg~~~~~~~~  178 (198)
T cd05144         158 VDDDEKIYIIDWPQMVSTDHP  178 (198)
T ss_pred             EcCCCcEEEEECCccccCCCc
Confidence            999999999999999766553

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.73  E-value=3e-17  Score=186.26  Aligned_cols=141  Identities=17%  Similarity=0.267  Sum_probs=113.6

Q ss_pred             cCCCccceEeecCCeEEEEEEeCCCcEEEEEE-eccccCC-----hhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeE
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKK-LDKRASS-----QQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQR  582 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~-l~~~~~~-----~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~  582 (689)
                      ..|...+.||+|+||.||+|.+.... +++|+ +.+....     ....+.+.+|++++..++|++++....++...+..
T Consensus       333 ~~~~~~~~iG~G~~g~Vy~~~~~~~~-~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~  411 (535)
T PRK09605        333 RRKIPDHLIGKGAEADIKKGEYLGRD-AVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPEEK  411 (535)
T ss_pred             cccCccceeccCCcEEEEEEeecCcc-ceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCCCC
Confidence            34566789999999999999875543 44443 3221111     12235688999999999999999888888887788


Q ss_pred             EEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCc
Q 005587          583 LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAP  662 (689)
Q Consensus       583 ~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~  662 (689)
                      ++||||++|++|.+++.            ....++.+++++|.|||+.   +|+||||||+|||+ +++.++|+|||+++
T Consensus       412 ~lv~E~~~g~~L~~~l~------------~~~~~~~~i~~~L~~lH~~---giiHrDlkp~NILl-~~~~~~liDFGla~  475 (535)
T PRK09605        412 TIVMEYIGGKDLKDVLE------------GNPELVRKVGEIVAKLHKA---GIVHGDLTTSNFIV-RDDRLYLIDFGLGK  475 (535)
T ss_pred             EEEEEecCCCcHHHHHH------------HHHHHHHHHHHHHHHHHhC---CCccCCCChHHEEE-ECCcEEEEeCcccc
Confidence            99999999999998875            2467899999999999987   89999999999999 57789999999999


Q ss_pred             cccC
Q 005587          663 LISS  666 (689)
Q Consensus       663 ~~~~  666 (689)
                      ....
T Consensus       476 ~~~~  479 (535)
T PRK09605        476 YSDL  479 (535)
T ss_pred             cCCc
Confidence            7643

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.72  E-value=4.3e-17  Score=160.81  Aligned_cols=135  Identities=19%  Similarity=0.299  Sum_probs=109.8

Q ss_pred             eEeecCCeEEEEEEeCCCcEEEEEEeccccC-C-----hhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEecc
Q 005587          516 LIGAGMLGSVYRAQLPDGKLLAVKKLDKRAS-S-----QQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYC  589 (689)
Q Consensus       516 ~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~-~-----~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~  589 (689)
                      .||+|+||.||+|.+ +|..|++|....... .     ......+.+|++++..++|+++.....++...+..++||||+
T Consensus         1 ~ig~G~~~~vy~~~~-~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~   79 (199)
T TIGR03724         1 LIAKGAEAIIYLGDF-LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEYI   79 (199)
T ss_pred             CCCCCceEEEEEeec-CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEE
Confidence            379999999999985 678899998643221 1     112356778999999999988766666666777789999999


Q ss_pred             CCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          590 SNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       590 ~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      +|++|.+++....           ..++.+++++|.++|+.   +++|+|++|+||+++ ++.++++|||+++....
T Consensus        80 ~g~~l~~~~~~~~-----------~~~~~~i~~~l~~lH~~---gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~~~~  141 (199)
T TIGR03724        80 EGKPLKDVIEEGN-----------DELLREIGRLVGKLHKA---GIVHGDLTTSNIIVR-DDKLYLIDFGLGKYSDE  141 (199)
T ss_pred             CCccHHHHHhhcH-----------HHHHHHHHHHHHHHHHC---CeecCCCCcceEEEE-CCcEEEEECCCCcCCCc
Confidence            9999998875421           07889999999999987   899999999999999 78999999999987543

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.69  E-value=2.2e-16  Score=164.95  Aligned_cols=134  Identities=19%  Similarity=0.357  Sum_probs=113.3

Q ss_pred             cCCCccceEeecCCeEEEEEE-eCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCC-----C---CCcceecEEEEeC
Q 005587          509 NSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR-----H---ANIVELKGYCAEH  579 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~-----H---pnIv~l~~~~~~~  579 (689)
                      .+|.+.++||-|.|++||+|. ..+.+.||+|+++..   +...+..+.|+++|++++     |   ..||+|+++|...
T Consensus        78 gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSA---qhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~Fkhs  154 (590)
T KOG1290|consen   78 GRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSA---QHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHS  154 (590)
T ss_pred             ceEEEEEeccccccceeEEEeeccCCeEEEEEEEehh---hHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceec
Confidence            678899999999999999995 456789999998653   234556778999998774     3   3699999999864


Q ss_pred             ----CeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCC
Q 005587          580 ----GQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDD  650 (689)
Q Consensus       580 ----~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~  650 (689)
                          .+++||+|++ |.+|..+|....  .+.++...+.+|++||+.||.|||..|  +|||-||||+|||+...
T Consensus       155 GpNG~HVCMVfEvL-GdnLLklI~~s~--YrGlpl~~VK~I~~qvL~GLdYLH~ec--gIIHTDlKPENvLl~~~  224 (590)
T KOG1290|consen  155 GPNGQHVCMVFEVL-GDNLLKLIKYSN--YRGLPLSCVKEICRQVLTGLDYLHREC--GIIHTDLKPENVLLCST  224 (590)
T ss_pred             CCCCcEEEEEehhh-hhHHHHHHHHhC--CCCCcHHHHHHHHHHHHHHHHHHHHhc--CccccCCCcceeeeecc
Confidence                4899999999 779999998654  567899999999999999999999987  99999999999999543

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.69  E-value=2.9e-16  Score=164.53  Aligned_cols=171  Identities=32%  Similarity=0.458  Sum_probs=144.2

Q ss_pred             CCccceEeecCCeEEEEEEeCCCcEEEEEEeccccCChh-hHHHHHHHHHHHhcCCCC-CcceecEEEEeCCeEEEEEec
Q 005587          511 FSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQ-KDDEFLELVNNIDRIRHA-NIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       511 f~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~-~~~~~~~e~~~l~~l~Hp-nIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      |...+.||.|+||.||++...  ..+++|.+........ ....+.+|+..+..+.|+ +|+++++++...+..+++++|
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~--~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   79 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR--KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEY   79 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec--cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEec
Confidence            566788999999999999876  7899999876654332 567899999999999988 799999999888888999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCC-cEEEEeecCCccccCC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDL-AVSVSDCGLAPLISSG  667 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~-~~kl~DFGla~~~~~~  667 (689)
                      +.++++.+++...... ..+.......++.|++.++.|+|..   +++|||+||+||+++..+ .++++|||+++.+...
T Consensus        80 ~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~H~~---~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~  155 (384)
T COG0515          80 VDGGSLEDLLKKIGRK-GPLSESEALFILAQILSALEYLHSK---GIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDP  155 (384)
T ss_pred             CCCCcHHHHHHhcccc-cCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeecCCCCeEEEeccCcceecCCC
Confidence            9999999777653211 2688899999999999999999998   799999999999999988 7999999999866554


Q ss_pred             C-------cceeecccceEEecccccc
Q 005587          668 S-------VSQVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       668 ~-------~~~~~~~~~~~~apE~~~~  687 (689)
                      .       ......++..|+|||.+..
T Consensus       156 ~~~~~~~~~~~~~~~t~~~~~pe~~~~  182 (384)
T COG0515         156 GSTSSIPALPSTSVGTPGYMAPEVLLG  182 (384)
T ss_pred             CccccccccccccccccccCCHHHhcC
Confidence            3       2355678889999998753

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.69  E-value=3.9e-17  Score=168.49  Aligned_cols=145  Identities=26%  Similarity=0.390  Sum_probs=125.4

Q ss_pred             HhhhccCCCccceEeecCCeEEEEEEeC----CCcEEEEEEeccccCChhhHHHHHHHHHHHhcC-CCCCcceecEEEEe
Q 005587          504 LQQYTNSFSQENLIGAGMLGSVYRAQLP----DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHANIVELKGYCAE  578 (689)
Q Consensus       504 l~~~~~~f~~~~~iG~G~~G~Vy~~~~~----~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~  578 (689)
                      +....+.|...++||+|.|++||++...    ..+.||+|.+....    ....+..|+++|..+ .+.||+++.+++..
T Consensus        31 ~p~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts----~p~ri~~El~~L~~~gG~~ni~~~~~~~rn  106 (418)
T KOG1167|consen   31 IPFISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTS----SPSRILNELEMLYRLGGSDNIIKLNGCFRN  106 (418)
T ss_pred             hhhhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeeccccc----CchHHHHHHHHHHHhccchhhhcchhhhcc
Confidence            3345567889999999999999999542    46889999986543    244578899999888 48999999999999


Q ss_pred             CCeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecC-CCcEEEEe
Q 005587          579 HGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDD-DLAVSVSD  657 (689)
Q Consensus       579 ~~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~-~~~~kl~D  657 (689)
                      ++...+||||+++-+..+++..       ++...+..+++.++.||.|+|..   |||||||||+|+|.+. .+.-.|+|
T Consensus       107 nd~v~ivlp~~~H~~f~~l~~~-------l~~~~i~~Yl~~ll~Al~~~h~~---GIvHRDiKpsNFL~n~~t~rg~LvD  176 (418)
T KOG1167|consen  107 NDQVAIVLPYFEHDRFRDLYRS-------LSLAEIRWYLRNLLKALAHLHKN---GIVHRDIKPSNFLYNRRTQRGVLVD  176 (418)
T ss_pred             CCeeEEEecccCccCHHHHHhc-------CCHHHHHHHHHHHHHHhhhhhcc---CccccCCCccccccccccCCceEEe
Confidence            9999999999999999988764       66788999999999999999998   9999999999999985 55678999


Q ss_pred             ecCCc
Q 005587          658 CGLAP  662 (689)
Q Consensus       658 FGla~  662 (689)
                      ||||.
T Consensus       177 FgLA~  181 (418)
T KOG1167|consen  177 FGLAQ  181 (418)
T ss_pred             chhHH
Confidence            99998

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.68  E-value=2.1e-16  Score=167.92  Aligned_cols=146  Identities=21%  Similarity=0.304  Sum_probs=119.9

Q ss_pred             CCCccceEeecCCeEEEEEEeCCC--cEEEEEEeccccCChhhHHHHHHHHHHHhcCCC----CCcceecEEE-EeCCeE
Q 005587          510 SFSQENLIGAGMLGSVYRAQLPDG--KLLAVKKLDKRASSQQKDDEFLELVNNIDRIRH----ANIVELKGYC-AEHGQR  582 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~~g--~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~H----pnIv~l~~~~-~~~~~~  582 (689)
                      .|.+.+.||+|+||.||.|.....  ..+|+|.........  ...+..|+.++..+.+    +++..+++.. ...++.
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~--~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~   96 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSK--PSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFN   96 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCC--CccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCcee
Confidence            788999999999999999976543  578888875532211  1156677777777762    6888999998 477889


Q ss_pred             EEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCC-----CcEEEEe
Q 005587          583 LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDD-----LAVSVSD  657 (689)
Q Consensus       583 ~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~-----~~~kl~D  657 (689)
                      |+||+.+ |.+|.++.....  ...++..++++|+.|++.+|++||+.   |++||||||+|+++...     ..+.|.|
T Consensus        97 ~iVM~l~-G~sL~dl~~~~~--~~~fs~~T~l~ia~q~l~~l~~lH~~---G~iHRDiKp~N~~~g~~~~~~~~~~~llD  170 (322)
T KOG1164|consen   97 FIVMSLL-GPSLEDLRKRNP--PGRFSRKTVLRIAIQNLNALEDLHSK---GFIHRDIKPENFVVGQSSRSEVRTLYLLD  170 (322)
T ss_pred             EEEEecc-CccHHHHHHhCC--CCCcCHhHHHHHHHHHHHHHHHHHhc---CcccCCcCHHHeeecCCCCcccceEEEEe
Confidence            9999988 889999886543  56799999999999999999999998   89999999999999754     4689999


Q ss_pred             ecCCcc
Q 005587          658 CGLAPL  663 (689)
Q Consensus       658 FGla~~  663 (689)
                      ||+|+.
T Consensus       171 fGlar~  176 (322)
T KOG1164|consen  171 FGLARR  176 (322)
T ss_pred             cCCCcc
Confidence            999993

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.65  E-value=8.4e-16  Score=149.92  Aligned_cols=140  Identities=23%  Similarity=0.255  Sum_probs=98.6

Q ss_pred             cceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHH----------------------HHHHHHHhcCCCCC--c
Q 005587          514 ENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEF----------------------LELVNNIDRIRHAN--I  569 (689)
Q Consensus       514 ~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~----------------------~~e~~~l~~l~Hpn--I  569 (689)
                      .+.||+|+||.||+|...+|+.||||++............+                      ..|.+.+.++.+..  +
T Consensus         2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~   81 (187)
T cd05119           2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPV   81 (187)
T ss_pred             CcccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCC
Confidence            46799999999999988789999999886532211111111                      24555555554433  3


Q ss_pred             ceecEEEEeCCeEEEEEeccCCCCHHH-HHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHh-CCCCCcEEecccCCCeEe
Q 005587          570 VELKGYCAEHGQRLLIYEYCSNGTLQD-MLHSDDELKNNLSWNTRIRMALGAARALEYLHE-ICQPPIVHRNFKSANILL  647 (689)
Q Consensus       570 v~l~~~~~~~~~~~lV~Ey~~ggsL~~-~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~-~~~~~iiHrDlKp~NILl  647 (689)
                      .+.+++    ...++||||++++.+.. .+...     ... .....++.+++.++.++|. .   +|+||||||+||++
T Consensus        82 ~~~~~~----~~~~lv~e~~~g~~~~~~~l~~~-----~~~-~~~~~~~~~~~~~l~~lh~~~---~ivH~Dl~p~Nili  148 (187)
T cd05119          82 PKPIDL----NRHVLVMEFIGGDGIPAPRLKDV-----RLL-EDPEELYDQILELMRKLYREA---GLVHGDLSEYNILV  148 (187)
T ss_pred             CceEec----CCCEEEEEEeCCCCccChhhhhh-----hhc-ccHHHHHHHHHHHHHHHhhcc---CcCcCCCChhhEEE
Confidence            333332    24589999999954422 11110     001 4577899999999999998 5   89999999999999


Q ss_pred             cCCCcEEEEeecCCccccCC
Q 005587          648 DDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       648 ~~~~~~kl~DFGla~~~~~~  667 (689)
                      + ++.++|+|||.+......
T Consensus       149 ~-~~~~~liDfg~a~~~~~~  167 (187)
T cd05119         149 D-DGKVYIIDVPQAVEIDHP  167 (187)
T ss_pred             E-CCcEEEEECcccccccCc
Confidence            9 889999999999876553

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.64  E-value=1.4e-17  Score=176.62  Aligned_cols=171  Identities=24%  Similarity=0.287  Sum_probs=152.9

Q ss_pred             ccEEeeCCCeEEEEecCCCCCcccCccccCCCCCCEEEccCCcCCCCCCCccc--cccccccccCccCCCCCCcccCCCC
Q 005587           72 QGVQCNASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPSSLATLT  149 (689)
Q Consensus        72 ~gv~C~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~--~~L~~L~Ls~N~l~~~~p~~~~~l~  149 (689)
                      .|++-...++.+|+|..|+++..-..++.+|+.|+.||||+|.|...-++.+.  .+|++|+|++|+|+..-+..|..|.
T Consensus       262 DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~  341 (873)
T KOG4194|consen  262 DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS  341 (873)
T ss_pred             CcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH
Confidence            46777778999999999999988888999999999999999999987777665  8999999999999988888999999


Q ss_pred             CccEEEccCCcCCCCCChhhcCCCCCCEEEccCCCCCCCCCC---CccCCcccceeecccccccccc-cccCCcc-cccc
Q 005587          150 LLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPP---SLENLSQLTTLHLQNNQLSGTL-DVLQDLP-LRDL  224 (689)
Q Consensus       150 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~---~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~-L~~L  224 (689)
                      .|++|+|++|++...-...|..+.+|+.|||++|.|++.+-+   .|..|++|+.|+|.+|+|..++ ..|..++ |++|
T Consensus       342 ~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~L  421 (873)
T KOG4194|consen  342 QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHL  421 (873)
T ss_pred             HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCccccee
Confidence            999999999999977777899999999999999999987654   4778999999999999999887 4677777 9999


Q ss_pred             ccccccCCCCCccccCCC
Q 005587          225 NIENNLFSGPIPEKMLQI  242 (689)
Q Consensus       225 ~Ls~N~l~g~ip~~l~~l  242 (689)
                      ||.+|.|...-|..|..+
T Consensus       422 dL~~NaiaSIq~nAFe~m  439 (873)
T KOG4194|consen  422 DLGDNAIASIQPNAFEPM  439 (873)
T ss_pred             cCCCCcceeecccccccc
Confidence            999999998888887765

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.63  E-value=1.7e-15  Score=141.20  Aligned_cols=135  Identities=20%  Similarity=0.229  Sum_probs=113.4

Q ss_pred             cceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCC--CCcceecEEEEeCCeEEEEEeccCC
Q 005587          514 ENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRH--ANIVELKGYCAEHGQRLLIYEYCSN  591 (689)
Q Consensus       514 ~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~H--pnIv~l~~~~~~~~~~~lV~Ey~~g  591 (689)
                      .+.||+|.++.||++...+ ..+++|.......    ...+..|+..+..++|  ..++++++++...+..+++|||+.+
T Consensus         3 ~~~i~~g~~~~v~~~~~~~-~~~~iK~~~~~~~----~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g   77 (155)
T cd05120           3 IKLLKGGLTNRVYLLGTKD-EDYVLKINPSREK----GADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEG   77 (155)
T ss_pred             ceecccccccceEEEEecC-CeEEEEecCCCCc----hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEecCC
Confidence            4679999999999998754 7899998765432    4568889999999876  5889999888888899999999998


Q ss_pred             CCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccc
Q 005587          592 GTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI  664 (689)
Q Consensus       592 gsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~  664 (689)
                      +.+..+           +......++.++++++.++|.....+++|+|++|+||++++.+.++++|||.++..
T Consensus        78 ~~~~~~-----------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~~  139 (155)
T cd05120          78 ETLDEV-----------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGYG  139 (155)
T ss_pred             eecccC-----------CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccCC
Confidence            777533           44566778999999999999864457999999999999999899999999999864

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.63  E-value=3.5e-17  Score=174.41  Aligned_cols=170  Identities=28%  Similarity=0.439  Sum_probs=121.0

Q ss_pred             CCeEEEEecCCCCCcccCccccCCCCCCEEEccCCcCCCCCCCccc---cccccccccCccCCCCCCcccCCCCCccEEE
Q 005587           79 SDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP---VTMQNFFLSDNQFSGSIPSSLATLTLLTDMS  155 (689)
Q Consensus        79 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  155 (689)
                      ..++.|||++|+|. ..|..+..-.++-+|+||+|+|. .||..+.   ..|-.||||+|+|. .+|+.+.+|..|+.|+
T Consensus       103 ~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~  179 (1255)
T KOG0444|consen  103 KDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLK  179 (1255)
T ss_pred             ccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhh
Confidence            56788888888887 46777888888888888888887 5665554   45667788888887 6777778888888888


Q ss_pred             ccCCcCC-------------------------CCCChhhcCCCCCCEEEccCCCCCCCCCCCccCCcccceeeccccccc
Q 005587          156 LNNNLLS-------------------------GEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLS  210 (689)
Q Consensus       156 Ls~N~l~-------------------------g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~  210 (689)
                      |++|-|.                         ..+|..+..|.+|..+|||.|+|. .+|+.+.++.+|+.|+||+|+|+
T Consensus       180 Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it  258 (1255)
T KOG0444|consen  180 LSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT  258 (1255)
T ss_pred             cCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee
Confidence            8877552                         246666777778888888888887 78888888888888888888877


Q ss_pred             ccccccCCcc-ccccccccccCCCCCccccCCCCCc---cccCCcCC
Q 005587          211 GTLDVLQDLP-LRDLNIENNLFSGPIPEKMLQIPNF---RKDGNPFN  253 (689)
Q Consensus       211 ~~~~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~l---~~~~N~~~  253 (689)
                      ..--...... |+.|+||.|+|+ .+|+.++.|+.|   ...+|.++
T Consensus       259 eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~  304 (1255)
T KOG0444|consen  259 ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT  304 (1255)
T ss_pred             eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccc
Confidence            5443333333 777777777777 667666655543   33444443

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.62  E-value=3.5e-15  Score=151.95  Aligned_cols=182  Identities=20%  Similarity=0.278  Sum_probs=144.8

Q ss_pred             hhhHhhhccCCCccceEeecCCeEEEEEEeCC------CcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecE
Q 005587          501 IASLQQYTNSFSQENLIGAGMLGSVYRAQLPD------GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKG  574 (689)
Q Consensus       501 ~~~l~~~~~~f~~~~~iG~G~~G~Vy~~~~~~------g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~  574 (689)
                      ..++.....+++...++-+|.||.||+|-|.+      .+.|-||.++.... +-....++.|--.+..+.|||+..+.+
T Consensus       276 ~~~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS-~iQv~~~L~es~lly~~sH~nll~V~~  354 (563)
T KOG1024|consen  276 LQELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHAS-QIQVNLLLQESMLLYGASHPNLLSVLG  354 (563)
T ss_pred             HHhhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhccc-HHHHHHHHHHHHHHhcCcCCCccceeE
Confidence            34555666778888899999999999995543      35677787765433 444567888888899999999999999


Q ss_pred             EEEe-CCeEEEEEeccCCCCHHHHHhcCc----ccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecC
Q 005587          575 YCAE-HGQRLLIYEYCSNGTLQDMLHSDD----ELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDD  649 (689)
Q Consensus       575 ~~~~-~~~~~lV~Ey~~ggsL~~~l~~~~----~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~  649 (689)
                      .+.+ .+..++++.++.-|+|..++..-+    ...+.+.-.+...++.|++.|++|||..   +|||.||...|.+||+
T Consensus       355 V~ie~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~---~ViHkDiAaRNCvIdd  431 (563)
T KOG1024|consen  355 VSIEDYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNH---GVIHKDIAARNCVIDD  431 (563)
T ss_pred             EEeeccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhc---Ccccchhhhhcceehh
Confidence            9876 457789999999999999998322    2245677788889999999999999998   8999999999999999


Q ss_pred             CCcEEEEeecCCccccCCCcceeec--ccc-eEEeccccc
Q 005587          650 DLAVSVSDCGLAPLISSGSVSQVSH--NLT-IMRAGGVTH  686 (689)
Q Consensus       650 ~~~~kl~DFGla~~~~~~~~~~~~~--~~~-~~~apE~~~  686 (689)
                      ..++||+|=.|+|.+-+++....-.  +.+ -||++|.+-
T Consensus       432 ~LqVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~  471 (563)
T KOG1024|consen  432 QLQVKLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEALQ  471 (563)
T ss_pred             heeEEeccchhccccCcccccccCCCCCCcccccCHHHHh
Confidence            9999999999999887666543322  222 389999873

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.61  E-value=8.1e-17  Score=164.18  Aligned_cols=193  Identities=23%  Similarity=0.366  Sum_probs=142.8

Q ss_pred             CCCCCCCCC---ccEEeeC-----------CCeEEEEecCCCCCcccCccccCCCCCCEEEccCCcCCCCCCCccc--cc
Q 005587           63 AGDPCGESW---QGVQCNA-----------SDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VT  126 (689)
Q Consensus        63 ~~~~C~~~w---~gv~C~~-----------~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~--~~  126 (689)
                      .+.+|.|+-   .-|+|..           ...++|+|..|+|+...+..|+.|.+|+.||||+|.|+.+-|..|.  .+
T Consensus        37 CP~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~  116 (498)
T KOG4237|consen   37 CPAPCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLAS  116 (498)
T ss_pred             CCCCcccCCCCCceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHh
Confidence            467787776   5688975           3568999999999999999999999999999999999988888776  44


Q ss_pred             cccc-cccCccCCCCCCcccCCCCCccEEEccCCcCC-------------------------------------------
Q 005587          127 MQNF-FLSDNQFSGSIPSSLATLTLLTDMSLNNNLLS-------------------------------------------  162 (689)
Q Consensus       127 L~~L-~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-------------------------------------------  162 (689)
                      |..| ++++|+|+......|++|..|+.|.+.-|++.                                           
T Consensus       117 l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA  196 (498)
T KOG4237|consen  117 LLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLA  196 (498)
T ss_pred             hhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhh
Confidence            4444 34447777544444555544443333322221                                           


Q ss_pred             ------------------------------------------------------------------CCCC-hhhcCCCCC
Q 005587          163 ------------------------------------------------------------------GEIP-DAFQSLTGL  175 (689)
Q Consensus       163 ------------------------------------------------------------------g~~p-~~~~~l~~L  175 (689)
                                                                                        +.-| ..|..|++|
T Consensus       197 ~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L  276 (498)
T KOG4237|consen  197 QNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNL  276 (498)
T ss_pred             cCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccc
Confidence                                                                              1112 246778889


Q ss_pred             CEEEccCCCCCCCCCCCccCCcccceeecccccccccc-cccCCcc-ccccccccccCCCCCccccC---CCCCccccCC
Q 005587          176 INLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTL-DVLQDLP-LRDLNIENNLFSGPIPEKML---QIPNFRKDGN  250 (689)
Q Consensus       176 ~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~-L~~L~Ls~N~l~g~ip~~l~---~l~~l~~~~N  250 (689)
                      +.|+|++|+|++.-+.+|..+..|++|+|..|+|...- ..|.+++ |+.|+|.+|+|+-.-|..|.   .|..|.+..|
T Consensus       277 ~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N  356 (498)
T KOG4237|consen  277 RKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN  356 (498)
T ss_pred             eEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccC
Confidence            99999999998888888888899999999999887655 3566776 88999999999877776554   4566778899


Q ss_pred             cCCCC
Q 005587          251 PFNST  255 (689)
Q Consensus       251 ~~~~~  255 (689)
                      ||+|.
T Consensus       357 p~~Cn  361 (498)
T KOG4237|consen  357 PFNCN  361 (498)
T ss_pred             cccCc
Confidence            99884

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.61  E-value=2.9e-17  Score=149.59  Aligned_cols=154  Identities=27%  Similarity=0.388  Sum_probs=136.4

Q ss_pred             cccCCCCCCEEEccCCcCCCCCCCccc-cccccccccCccCCCCCCcccCCCCCccEEEccCCcCCCCCChhhcCCCCCC
Q 005587           98 NLGAFSSIRVIDLSNNHIGGSIPSILP-VTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLI  176 (689)
Q Consensus        98 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~  176 (689)
                      .+.++++++.|.||+|+|+...|..-. .+|+.|++++|+|+ .+|..+++|+.|+.|+++-|++. .+|..|+.++.|+
T Consensus        28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            356788899999999999955444333 89999999999999 88999999999999999999998 9999999999999


Q ss_pred             EEEccCCCCCC-CCCCCccCCcccceeecccccccccccccCCcc-ccccccccccCCCCCccccCC---CCCccccCCc
Q 005587          177 NLDLSSNNLSG-ELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP-LRDLNIENNLFSGPIPEKMLQ---IPNFRKDGNP  251 (689)
Q Consensus       177 ~L~Ls~N~l~g-~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~---l~~l~~~~N~  251 (689)
                      .|||..|+|+. .+|..|..|..|+.|+|++|.|.-.++..+.+. |+.|.+..|.+- .+|.+++.   |+.|.+.||.
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence            99999999975 789999999999999999999999998888887 999999999998 78887765   4556788888


Q ss_pred             CCC
Q 005587          252 FNS  254 (689)
Q Consensus       252 ~~~  254 (689)
                      +.-
T Consensus       185 l~v  187 (264)
T KOG0617|consen  185 LTV  187 (264)
T ss_pred             eee
Confidence            763

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.60  E-value=9.1e-15  Score=148.12  Aligned_cols=139  Identities=17%  Similarity=0.198  Sum_probs=107.0

Q ss_pred             cceEe-ecCCeEEEEEEeCCCcEEEEEEeccccC-----------ChhhHHHHHHHHHHHhcCCCCCc--ceecEEEEeC
Q 005587          514 ENLIG-AGMLGSVYRAQLPDGKLLAVKKLDKRAS-----------SQQKDDEFLELVNNIDRIRHANI--VELKGYCAEH  579 (689)
Q Consensus       514 ~~~iG-~G~~G~Vy~~~~~~g~~vAvK~l~~~~~-----------~~~~~~~~~~e~~~l~~l~HpnI--v~l~~~~~~~  579 (689)
                      ...|| .|+.|+||.++.. +..++||++.....           .......+.+|++++.+++|++|  +..+++....
T Consensus        36 ~~~lg~~~g~gtv~~v~~~-~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~  114 (239)
T PRK01723         36 ARVVGSAKGRGTTWFVQTP-GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVR  114 (239)
T ss_pred             CceeecCCCCccEEEEEeC-CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeee
Confidence            35788 8999999999874 67899998753210           11233567889999999998885  6667665443


Q ss_pred             -Ce---EEEEEeccCC-CCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEE
Q 005587          580 -GQ---RLLIYEYCSN-GTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVS  654 (689)
Q Consensus       580 -~~---~~lV~Ey~~g-gsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~k  654 (689)
                       ..   .++||||++| .+|.+++...     .++..    ...+++++|.+||..   +|+||||||+|||++.++.++
T Consensus       115 ~~~~~~~~lV~e~l~G~~~L~~~l~~~-----~l~~~----~~~~i~~~l~~lH~~---GI~HrDlkp~NILv~~~~~v~  182 (239)
T PRK01723        115 HGLFYRADILIERIEGARDLVALLQEA-----PLSEE----QWQAIGQLIARFHDA---GVYHADLNAHNILLDPDGKFW  182 (239)
T ss_pred             cCcceeeeEEEEecCCCCCHHHHHhcC-----CCCHH----HHHHHHHHHHHHHHC---CCCCCCCCchhEEEcCCCCEE
Confidence             22   3599999997 6999988642     34433    356899999999998   899999999999999988999


Q ss_pred             EEeecCCcccc
Q 005587          655 VSDCGLAPLIS  665 (689)
Q Consensus       655 l~DFGla~~~~  665 (689)
                      |+|||.+....
T Consensus       183 LIDfg~~~~~~  193 (239)
T PRK01723        183 LIDFDRGELRT  193 (239)
T ss_pred             EEECCCcccCC
Confidence            99999998854

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.56  E-value=1.2e-15  Score=162.26  Aligned_cols=153  Identities=20%  Similarity=0.220  Sum_probs=78.7

Q ss_pred             CeEEEEecCCCCCcccCccccCCCCCCEEEccCCcCCCCCCCccc--cccccccccCccCCCCCCcccCCCCCccEEEcc
Q 005587           80 DIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLN  157 (689)
Q Consensus        80 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  157 (689)
                      ++++|+|++|.|+..--..|.+|.+|..|.|++|+++...+..|.  +.|+.|+|..|+|.-.---.|..|++|+.|.|.
T Consensus       174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq  253 (873)
T KOG4194|consen  174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ  253 (873)
T ss_pred             CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhh
Confidence            455566666666555555566666666666666666644444443  455555555555552223344445555544455


Q ss_pred             CCcCCCCCChhhcCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccccccc-cccCCcc-ccccccccccCC
Q 005587          158 NNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTL-DVLQDLP-LRDLNIENNLFS  232 (689)
Q Consensus       158 ~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~-L~~L~Ls~N~l~  232 (689)
                      .|.++..-...|..|.++++|+|+.|+++..--.++.+|+.|+.|+||+|.|..+- +.+.... |++|+|++|+|+
T Consensus       254 rN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~  330 (873)
T KOG4194|consen  254 RNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT  330 (873)
T ss_pred             hcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence            55544444444555555555555555555333344555555555555555554433 2222222 555555555555

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.55  E-value=8.5e-14  Score=160.85  Aligned_cols=214  Identities=22%  Similarity=0.311  Sum_probs=148.4

Q ss_pred             HHHHhhhccccCCHhhHHHHHHHHHHhCCC-CCCC----CCCCCCCCCCC--------------CCccEEeeCC------
Q 005587           25 LIWAAGFSCAVTNPNDVAAINSLYAALGSP-VLPG----WVASAGDPCGE--------------SWQGVQCNAS------   79 (689)
Q Consensus        25 ~~~~~~~~~~~~~~~d~~aL~~~~~~l~~~-~l~~----W~~~~~~~C~~--------------~w~gv~C~~~------   79 (689)
                      .++..+...+.+.+++.+.+++..+.|..| .+.+    |.. +.|.|.-              .-.-|.|...      
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~-~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~~~vt~l~  127 (754)
T PRK15370         49 CIAYLCHPPETASPEEIKSKFECLRMLAFPAYADNIQYSRGG-ADQYCILSENSQEILSIVFNTEGYTVEGGGKSVTYTR  127 (754)
T ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHhcCCchhhccccccCC-CCcccccCCcchhhheeeecCCceEEecCCCcccccc
Confidence            444445567788899999999999999988 5555    875 5788852              1223667432      


Q ss_pred             ---------------------------------------------------CeEEEEecCCCCCcccCccccCCCCCCEE
Q 005587           80 ---------------------------------------------------DIIAIILNGANLGGELGENLGAFSSIRVI  108 (689)
Q Consensus        80 ---------------------------------------------------~l~~L~L~~n~l~g~~p~~l~~l~~L~~L  108 (689)
                                                                         +.+.|+|++++++. +|..+.  ++|+.|
T Consensus       128 ~~g~~~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L  204 (754)
T PRK15370        128 VTESEQASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLTT-IPACIP--EQITTL  204 (754)
T ss_pred             cccccccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcCc-CCcccc--cCCcEE
Confidence                                                               34567777777774 555443  478888


Q ss_pred             EccCCcCCCCCCCccccccccccccCccCCCCCCcccCCCCCccEEEccCCcCCCCCChhhcCCCCCCEEEccCCCCCCC
Q 005587          109 DLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGE  188 (689)
Q Consensus       109 ~Ls~N~l~~~~p~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~  188 (689)
                      +|++|+|+ .+|..+..+|+.|+|++|+|+ .+|..+.  .+|+.|+|++|+|. .+|..+.  .+|+.|+|++|+|+ .
T Consensus       205 ~Ls~N~Lt-sLP~~l~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~  276 (754)
T PRK15370        205 ILDNNELK-SLPENLQGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-C  276 (754)
T ss_pred             EecCCCCC-cCChhhccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-c
Confidence            88888888 456666678888888888888 5666553  36888888888887 6776664  47888888888888 5


Q ss_pred             CCCCccCCcccceeecccccccccccccCCccccccccccccCCCCCcc-ccCCCCCccccCCcCCC
Q 005587          189 LPPSLENLSQLTTLHLQNNQLSGTLDVLQDLPLRDLNIENNLFSGPIPE-KMLQIPNFRKDGNPFNS  254 (689)
Q Consensus       189 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~L~~L~Ls~N~l~g~ip~-~l~~l~~l~~~~N~~~~  254 (689)
                      +|..+.  .+|+.|+|++|+|++.+..+. ..|+.|+|++|+|+. +|. ...+|..|.+.+|.+.+
T Consensus       277 LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp-~sL~~L~Ls~N~Lt~-LP~~l~~sL~~L~Ls~N~Lt~  339 (754)
T PRK15370        277 LPENLP--EELRYLSVYDNSIRTLPAHLP-SGITHLNVQSNSLTA-LPETLPPGLKTLEAGENALTS  339 (754)
T ss_pred             cccccC--CCCcEEECCCCccccCcccch-hhHHHHHhcCCcccc-CCccccccceeccccCCcccc
Confidence            676654  478888888888887654332 136777777777774 443 33456666666766654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.55  E-value=6.2e-17  Score=165.16  Aligned_cols=182  Identities=21%  Similarity=0.308  Sum_probs=155.2

Q ss_pred             CCCCCCccEEeeC------CCeEEEEecCCCCCcccCccccCCCCCCEEEccCCcCCCCCCCccc-cccccccccCccCC
Q 005587           66 PCGESWQGVQCNA------SDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP-VTMQNFFLSDNQFS  138 (689)
Q Consensus        66 ~C~~~w~gv~C~~------~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~~L~~L~Ls~N~l~  138 (689)
                      +|.|++....|-.      ..+..++..+|+++ .+|+.++++.+|..|++.+|++....|..+. ..|++||...|.++
T Consensus       118 ~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~  196 (565)
T KOG0472|consen  118 KLDCSSNELKELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE  196 (565)
T ss_pred             hhhccccceeecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh
Confidence            4555655554432      25677788889888 6888999999999999999999988887777 88999999999998


Q ss_pred             CCCCcccCCCCCccEEEccCCcCCCCCChhhcCCCCCCEEEccCCCCCCCCCCCcc-CCcccceeecccccccccccccC
Q 005587          139 GSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLE-NLSQLTTLHLQNNQLSGTLDVLQ  217 (689)
Q Consensus       139 ~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~  217 (689)
                       .+|..++.|.+|.-|||.+|+|. .+| +|.++..|+.|+++.|+|+ .+|.+.+ .|.+|..|||.+|+++..|+.+.
T Consensus       197 -tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~c  272 (565)
T KOG0472|consen  197 -TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC  272 (565)
T ss_pred             -cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHH
Confidence             88999999999999999999998 788 8999999999999999998 7887766 89999999999999999998887


Q ss_pred             Ccc-ccccccccccCCCCCccccCCC--CCccccCCcCC
Q 005587          218 DLP-LRDLNIENNLFSGPIPEKMLQI--PNFRKDGNPFN  253 (689)
Q Consensus       218 ~l~-L~~L~Ls~N~l~g~ip~~l~~l--~~l~~~~N~~~  253 (689)
                      .+. |++||||+|.++ .+|-+++++  ..|.+.|||+.
T Consensus       273 lLrsL~rLDlSNN~is-~Lp~sLgnlhL~~L~leGNPlr  310 (565)
T KOG0472|consen  273 LLRSLERLDLSNNDIS-SLPYSLGNLHLKFLALEGNPLR  310 (565)
T ss_pred             HhhhhhhhcccCCccc-cCCcccccceeeehhhcCCchH
Confidence            777 999999999999 566677765  45677899875

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.55  E-value=4.6e-16  Score=165.95  Aligned_cols=171  Identities=22%  Similarity=0.385  Sum_probs=109.2

Q ss_pred             CeEEEEecCCCCC-cccCccccCCCCCCEEEccCCcCCCCCCCccc--cccccccccCccCCCCCCcccCCCCCccEEEc
Q 005587           80 DIIAIILNGANLG-GELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPSSLATLTLLTDMSL  156 (689)
Q Consensus        80 ~l~~L~L~~n~l~-g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  156 (689)
                      -|..+|+++|.++ +..|.....+++++.|.|...+|. .+|+.++  .+|++|.+++|+|. .+-..++.|+.|+.+++
T Consensus         8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~   85 (1255)
T KOG0444|consen    8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIV   85 (1255)
T ss_pred             eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhh
Confidence            3556677777776 456666667777777777666666 5666665  56777777777766 44455666667777777


Q ss_pred             cCCcCCC-CCChhhcCCCCCCEEEccCCCCCCCCCCCccCCcccceeeccccccccccc-ccCCcc-ccccccccccCCC
Q 005587          157 NNNLLSG-EIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLD-VLQDLP-LRDLNIENNLFSG  233 (689)
Q Consensus       157 s~N~l~g-~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~Ls~N~l~g  233 (689)
                      .+|+|.. -||..+..|..|..||||+|+|. ..|..+.+-+++-.|+||+|+|..++. .+.++. |-.||||+|+|..
T Consensus        86 R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~  164 (1255)
T KOG0444|consen   86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM  164 (1255)
T ss_pred             hccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhh
Confidence            7776643 36666666777777777777776 666666666677777777777766663 334444 6667777777763


Q ss_pred             CCc--cccCCCCCccccCCcCC
Q 005587          234 PIP--EKMLQIPNFRKDGNPFN  253 (689)
Q Consensus       234 ~ip--~~l~~l~~l~~~~N~~~  253 (689)
                      ..|  ..+..|..|.+++||++
T Consensus       165 LPPQ~RRL~~LqtL~Ls~NPL~  186 (1255)
T KOG0444|consen  165 LPPQIRRLSMLQTLKLSNNPLN  186 (1255)
T ss_pred             cCHHHHHHhhhhhhhcCCChhh
Confidence            333  12445556666666655

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.52  E-value=1.8e-14  Score=166.58  Aligned_cols=147  Identities=25%  Similarity=0.371  Sum_probs=116.7

Q ss_pred             hhccCCCccceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCC---CCCcceecEEEEeCCeE
Q 005587          506 QYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR---HANIVELKGYCAEHGQR  582 (689)
Q Consensus       506 ~~~~~f~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~---HpnIv~l~~~~~~~~~~  582 (689)
                      ...+.|.+...||+|+||+||+|...+|+.||+|+-.......     |.--.+++.+|+   -+-|..+...+...+.-
T Consensus       695 ~~~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~WE-----fYI~~q~~~RLk~~~~~~~~~~~~a~~~~~~S  769 (974)
T KOG1166|consen  695 VGGEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNPWE-----FYICLQVMERLKPQMLPSIMHISSAHVFQNAS  769 (974)
T ss_pred             ecceeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCCcee-----eeehHHHHHhhchhhhcchHHHHHHHccCCcc
Confidence            3446788889999999999999988789999999876543321     111122333443   34566677777778888


Q ss_pred             EEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEec-------CCCcEEE
Q 005587          583 LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLD-------DDLAVSV  655 (689)
Q Consensus       583 ~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~-------~~~~~kl  655 (689)
                      +||+||.+.|+|.+++..    .+.++|..++.++.|+++-++.||..   +|||+||||+|+||.       +..-++|
T Consensus       770 ~lv~ey~~~Gtlld~~N~----~~~m~e~lv~~~~~qml~ive~lH~~---~IIHgDiKPDNfll~~~~~~~~~~~~l~l  842 (974)
T KOG1166|consen  770 VLVSEYSPYGTLLDLINT----NKVMDEYLVMFFSCQMLRIVEHLHAM---GIIHGDIKPDNFLLRREICADSDSKGLYL  842 (974)
T ss_pred             eeeeeccccccHHHhhcc----CCCCCchhhhHHHHHHHHHHHHHHhc---ceecccCCcceeEeecccCCCCcccceEE
Confidence            999999999999999984    46789999999999999999999997   899999999999993       2345899


Q ss_pred             EeecCCccc
Q 005587          656 SDCGLAPLI  664 (689)
Q Consensus       656 ~DFGla~~~  664 (689)
                      +|||-+-.+
T Consensus       843 IDfG~siDm  851 (974)
T KOG1166|consen  843 IDFGRSIDM  851 (974)
T ss_pred             Eecccceee
Confidence            999998654

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.49  E-value=1.9e-15  Score=163.65  Aligned_cols=160  Identities=21%  Similarity=0.244  Sum_probs=134.2

Q ss_pred             EeecCCeEEEEEE----eCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCC-CCCcceecEEEEeCCeEEEEEeccCC
Q 005587          517 IGAGMLGSVYRAQ----LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR-HANIVELKGYCAEHGQRLLIYEYCSN  591 (689)
Q Consensus       517 iG~G~~G~Vy~~~----~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~-HpnIv~l~~~~~~~~~~~lV~Ey~~g  591 (689)
                      +|+|.||.|+.++    ...|..+|+|.+.+.............|..++...+ ||.+|+++..++.+...+++++|..|
T Consensus         2 lg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~rg   81 (612)
T KOG0603|consen    2 LGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFLRG   81 (612)
T ss_pred             CCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeeeeeccccchhHhhhhccc
Confidence            6899999999873    234788999988765443333334556677788886 99999999999999999999999999


Q ss_pred             CCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCcce
Q 005587          592 GTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQ  671 (689)
Q Consensus       592 gsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~  671 (689)
                      |+|...+...    ..+.+.....+...++-+++++|..   +|+|||+|++||+++.+|++++.|||+++...+.... 
T Consensus        82 g~lft~l~~~----~~f~~~~~~~~~aelaLald~lh~l---~iiyrd~k~enilld~~Ghi~~tdfglske~v~~~~~-  153 (612)
T KOG0603|consen   82 GDLFTRLSKE----VMFDELDVAFYLAELALALDHLHKL---GIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEKIA-  153 (612)
T ss_pred             chhhhccccC----CchHHHHHHHHHHHHHHHHhhcchh---HHHHhcccccceeecccCccccCCchhhhHhHhhhhc-
Confidence            9999888753    3456667777888899999999998   8999999999999999999999999999998777655 


Q ss_pred             eecccceEEeccccc
Q 005587          672 VSHNLTIMRAGGVTH  686 (689)
Q Consensus       672 ~~~~~~~~~apE~~~  686 (689)
                        +++..||||||+.
T Consensus       154 --cgt~eymApEI~~  166 (612)
T KOG0603|consen  154 --CGTYEYRAPEIIN  166 (612)
T ss_pred             --ccchhhhhhHhhh
Confidence              7899999999985

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.49  E-value=1.6e-14  Score=171.76  Aligned_cols=117  Identities=11%  Similarity=0.101  Sum_probs=86.0

Q ss_pred             cCCC-CCcceecEEE-------EeCCeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCC
Q 005587          563 RIRH-ANIVELKGYC-------AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPP  634 (689)
Q Consensus       563 ~l~H-pnIv~l~~~~-------~~~~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~  634 (689)
                      .++| +||++++++|       ...+..+++|||+ +++|+++|...   ...+++.+++.|+.||++||.|||+.   +
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~L~~~l~~~---~~~~~~~~~~~i~~qi~~al~~lH~~---g  100 (793)
T PLN00181         28 SLSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECE-DVSLRQWLDNP---DRSVDAFECFHVFRQIVEIVNAAHSQ---G  100 (793)
T ss_pred             hhhHHHHHHHhhcccCCccccccccchhhhhhccC-CccHHHHHhcc---cccccHHHHHHHHHHHHHHHHHHHhC---C
Confidence            3445 5788888877       2334567888988 66999999743   34589999999999999999999987   8


Q ss_pred             cEEecccCCCeEecC-------------------CCcEEEEeecCCccccCCC-----------------cceeecccce
Q 005587          635 IVHRNFKSANILLDD-------------------DLAVSVSDCGLAPLISSGS-----------------VSQVSHNLTI  678 (689)
Q Consensus       635 iiHrDlKp~NILl~~-------------------~~~~kl~DFGla~~~~~~~-----------------~~~~~~~~~~  678 (689)
                      |+||||||+||||+.                   ++.+|++|||+++......                 ......++++
T Consensus       101 IvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  180 (793)
T PLN00181        101 IVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSW  180 (793)
T ss_pred             eeeccCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccccCCCcccccccCCCcc
Confidence            999999999999954                   4456666777766432100                 0011246778


Q ss_pred             EEeccccc
Q 005587          679 MRAGGVTH  686 (689)
Q Consensus       679 ~~apE~~~  686 (689)
                      |||||++.
T Consensus       181 Y~APE~~~  188 (793)
T PLN00181        181 YTSPEEDN  188 (793)
T ss_pred             eEChhhhc
Confidence            99999974

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.48  E-value=1.2e-13  Score=151.79  Aligned_cols=148  Identities=24%  Similarity=0.295  Sum_probs=101.8

Q ss_pred             cCCCccceEeecCCeEEEEEEeCCCcEEEEEEeccccCChh--------------------------------------h
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQ--------------------------------------K  550 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~--------------------------------------~  550 (689)
                      ..|+ .+.||.|++|+||+|++++|+.||||+.+......-                                      .
T Consensus       118 ~~fd-~~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~  196 (437)
T TIGR01982       118 AEFE-EKPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRR  196 (437)
T ss_pred             hhCC-CcceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHH
Confidence            3444 368999999999999999999999999754311000                                      0


Q ss_pred             HHHHHHHHHHHhcC----CCCCcceecEEE-EeCCeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHH-HH
Q 005587          551 DDEFLELVNNIDRI----RHANIVELKGYC-AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR-AL  624 (689)
Q Consensus       551 ~~~~~~e~~~l~~l----~HpnIv~l~~~~-~~~~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~-aL  624 (689)
                      +-+|.+|.+.+.++    +|.+-|.+-..| ...+..+|||||++|++|.++.....   ...+   +.+++.++++ .+
T Consensus       197 Eldf~~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~~---~~~~---~~~ia~~~~~~~l  270 (437)
T TIGR01982       197 ELDLRREAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALDE---AGLD---RKALAENLARSFL  270 (437)
T ss_pred             HHCHHHHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHHHh---cCCC---HHHHHHHHHHHHH
Confidence            11244555555544    233323332233 23456799999999999988765321   1122   3456666665 46


Q ss_pred             HHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          625 EYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       625 ~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      ..+|..   +++|+|+||.||++++++.++++|||++..+.+
T Consensus       271 ~ql~~~---g~~H~D~hPgNilv~~~g~i~liDfG~~~~l~~  309 (437)
T TIGR01982       271 NQVLRD---GFFHADLHPGNIFVLKDGKIIALDFGIVGRLSE  309 (437)
T ss_pred             HHHHhC---CceeCCCCcccEEECCCCcEEEEeCCCeeECCH
Confidence            778876   899999999999999999999999999988764

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.46  E-value=4.6e-14  Score=159.99  Aligned_cols=167  Identities=22%  Similarity=0.238  Sum_probs=126.3

Q ss_pred             CccceEeecCCeEEEEEEe-CCCcEEEEEEecc----ccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          512 SQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDK----RASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       512 ~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~----~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      ...+++|.|++|.|+.+.. .....++.|....    ..........+..|+.+-..+.|+|++..+..+.+....+-+|
T Consensus       321 ~~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~~~~~~m  400 (601)
T KOG0590|consen  321 KPGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEIDGILQSM  400 (601)
T ss_pred             CccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhcccchhhh
Confidence            3467899999998887743 3344455554331    1111111222566777778899999988877777766666669


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      |||++ +|+.++...    ..+....+..++.|++.|+.|+|+.   +|.|||+|++|+++..+|.+||+|||.+..+.-
T Consensus       401 E~~~~-Dlf~~~~~~----~~~~~~e~~c~fKqL~~Gv~y~h~~---GiahrdlK~enll~~~~g~lki~Dfg~~~vf~~  472 (601)
T KOG0590|consen  401 EYCPY-DLFSLVMSN----GKLTPLEADCFFKQLLRGVKYLHSM---GLAHRDLKLENLLVTENGILKIIDFGAASVFRY  472 (601)
T ss_pred             hcccH-HHHHHHhcc----cccchhhhhHHHHHHHHHHHHHHhc---CceeccCccccEEEecCCceEEeecCcceeecc
Confidence            99999 999999763    2466778888999999999999998   899999999999999999999999999987654


Q ss_pred             CC-----cceeecccceEEeccccc
Q 005587          667 GS-----VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 ~~-----~~~~~~~~~~~~apE~~~  686 (689)
                      +.     ......+...|+|||++.
T Consensus       473 ~~e~~~~~~~g~~gS~pY~apE~~~  497 (601)
T KOG0590|consen  473 PWEKNIHESSGIVGSDPYLAPEVLT  497 (601)
T ss_pred             CcchhhhhhcCcccCCcCcCccccc
Confidence            32     223456778899999985

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.43  E-value=2.2e-13  Score=157.40  Aligned_cols=160  Identities=28%  Similarity=0.461  Sum_probs=113.3

Q ss_pred             CCeEEEEecCCCCCcccCccccCCCCCCEEEccCCcCCCCCCCccccccccccccCccCCCCCCcccCCCCCccEEEccC
Q 005587           79 SDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNN  158 (689)
Q Consensus        79 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  158 (689)
                      ..++.|+|++|+|+. +|..+.  .+|+.|+|++|+|+ .+|..++.+|+.|+|++|+|. .+|..+.  .+|+.|+|++
T Consensus       199 ~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~  271 (754)
T PRK15370        199 EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLPDTIQEMELSINRIT-ELPERLP--SALQSLDLFH  271 (754)
T ss_pred             cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhhccccEEECcCCccC-cCChhHh--CCCCEEECcC
Confidence            578999999999994 666554  58999999999998 567777778999999999988 6777664  4789999999


Q ss_pred             CcCCCCCChhhcCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccccccccccCCccccccccccccCCCCCccc
Q 005587          159 NLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLPLRDLNIENNLFSGPIPEK  238 (689)
Q Consensus       159 N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~L~~L~Ls~N~l~g~ip~~  238 (689)
                      |+|+ .+|..+.  .+|+.|+|++|+|+ .+|..+.  ++|+.|+|++|+|+..+..+. ..|+.|++++|.|++ +|..
T Consensus       272 N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~-~sL~~L~Ls~N~Lt~-LP~~  343 (754)
T PRK15370        272 NKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTALPETLP-PGLKTLEAGENALTS-LPAS  343 (754)
T ss_pred             CccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccccCCcccc-ccceeccccCCcccc-CChh
Confidence            9998 5777654  47899999999888 4565443  356777777777765543222 235666666666653 4433


Q ss_pred             c-CCCCCccccCCcCC
Q 005587          239 M-LQIPNFRKDGNPFN  253 (689)
Q Consensus       239 l-~~l~~l~~~~N~~~  253 (689)
                      + .+|..|++++|.+.
T Consensus       344 l~~sL~~L~Ls~N~L~  359 (754)
T PRK15370        344 LPPELQVLDVSKNQIT  359 (754)
T ss_pred             hcCcccEEECCCCCCC
Confidence            3 24555555665554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.42  E-value=3.9e-15  Score=158.31  Aligned_cols=169  Identities=30%  Similarity=0.457  Sum_probs=150.1

Q ss_pred             CCeEEEEecCCCCCcccCccccCCCCCCEEEccCCcCCCCCCCccc--cccccccccCccCCCCCCcccCCCCCccEEEc
Q 005587           79 SDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPSSLATLTLLTDMSL  156 (689)
Q Consensus        79 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  156 (689)
                      ...+..||+.|.+. .+|.++..+..|+.|.|..|.|. .+|..+.  ..|++|||+.|+++ .+|..++.|+ |+.|-+
T Consensus        75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~  150 (722)
T KOG0532|consen   75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV  150 (722)
T ss_pred             cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence            45677899999998 68889999999999999999998 5666555  77999999999999 8898999887 899999


Q ss_pred             cCCcCCCCCChhhcCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccccccccccCCccccccccccccCCCCCc
Q 005587          157 NNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLPLRDLNIENNLFSGPIP  236 (689)
Q Consensus       157 s~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~L~~L~Ls~N~l~g~ip  236 (689)
                      ++|+++ .+|+.++.+..|..||.+.|++. .+|..+++|.+|+.|.+..|++...++.+..++|..||+|.|+++ .||
T Consensus       151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis-~iP  227 (722)
T KOG0532|consen  151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKIS-YLP  227 (722)
T ss_pred             ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCcee-ecc
Confidence            999998 89999999999999999999998 789999999999999999999999998888999999999999999 899


Q ss_pred             cccCCCCC---ccccCCcCCC
Q 005587          237 EKMLQIPN---FRKDGNPFNS  254 (689)
Q Consensus       237 ~~l~~l~~---l~~~~N~~~~  254 (689)
                      -.|.+|+.   |.+.+||+..
T Consensus       228 v~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  228 VDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hhhhhhhhheeeeeccCCCCC
Confidence            88776655   5678999874

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.42  E-value=4.1e-13  Score=154.45  Aligned_cols=98  Identities=27%  Similarity=0.419  Sum_probs=52.1

Q ss_pred             CccEEEccCCcCCCCCChhhcC-----------------CCCCCEEEccCCCCCCCCCCCccCCcccceeeccccccccc
Q 005587          150 LLTDMSLNNNLLSGEIPDAFQS-----------------LTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGT  212 (689)
Q Consensus       150 ~L~~L~Ls~N~l~g~~p~~~~~-----------------l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~  212 (689)
                      +|++|+|++|+|+ .+|....+                 +.+|+.|+|++|+|+ .+|..   .++|+.|+|++|+|++.
T Consensus       343 ~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~LssI  417 (788)
T PRK15387        343 GLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTSL  417 (788)
T ss_pred             ccceEecCCCccC-CCCCCCcccceehhhccccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCCC
Confidence            5666777777666 34432111                 123455555555555 23332   23455666666666554


Q ss_pred             ccccCCccccccccccccCCCCCccccCC---CCCccccCCcCCCC
Q 005587          213 LDVLQDLPLRDLNIENNLFSGPIPEKMLQ---IPNFRKDGNPFNST  255 (689)
Q Consensus       213 ~~~~~~l~L~~L~Ls~N~l~g~ip~~l~~---l~~l~~~~N~~~~~  255 (689)
                      +....  .|+.|+|++|+|+ .+|..+.+   +..|++++|++++.
T Consensus       418 P~l~~--~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        418 PMLPS--GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             Ccchh--hhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence            33211  2566777777776 56665543   34456777777654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.42  E-value=3.1e-15  Score=152.87  Aligned_cols=168  Identities=26%  Similarity=0.390  Sum_probs=95.4

Q ss_pred             eEEEEecCCCCCcccCccccCCCCCCEEEccCCcCCCCCCCccc-cccccccccCccCCCCCCcccCC------------
Q 005587           81 IIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP-VTMQNFFLSDNQFSGSIPSSLAT------------  147 (689)
Q Consensus        81 l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~~L~~L~Ls~N~l~~~~p~~~~~------------  147 (689)
                      +..++.+.|++. .+|+.++++.+|..|++++|.+...+++... ..|..|+..+|+++ .+|+.+.+            
T Consensus        93 l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n  170 (565)
T KOG0472|consen   93 LKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGN  170 (565)
T ss_pred             HHHhhcccchHh-hccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhcccc
Confidence            445666666666 4666666666666666666666633332222 34444444555544 34444444            


Q ss_pred             -----------CCCccEEEccCCcCCCCCChhhcCCCCCCEEEccCCCCCCCCCCCccCCcccceeeccccccccccc-c
Q 005587          148 -----------LTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLD-V  215 (689)
Q Consensus       148 -----------l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~  215 (689)
                                 ++.|+.||..+|.++ .+|..++.|.+|+.|+|.+|+|. .+| +|.++..|.+|+++.|+|+-.+. .
T Consensus       171 ~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~  247 (565)
T KOG0472|consen  171 KLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEH  247 (565)
T ss_pred             chhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHH
Confidence                       555555555555554 55555555555555566666555 444 55555556666666665555442 2


Q ss_pred             cCCcc-ccccccccccCCCCCccccCCC---CCccccCCcCCC
Q 005587          216 LQDLP-LRDLNIENNLFSGPIPEKMLQI---PNFRKDGNPFNS  254 (689)
Q Consensus       216 ~~~l~-L~~L~Ls~N~l~g~ip~~l~~l---~~l~~~~N~~~~  254 (689)
                      ++.++ +..|||..|++. ..|++++-+   ..|++++|.+++
T Consensus       248 ~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~  289 (565)
T KOG0472|consen  248 LKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS  289 (565)
T ss_pred             hcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc
Confidence            33555 677777777777 677765543   346677776654

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.40  E-value=2.3e-13  Score=151.39  Aligned_cols=149  Identities=14%  Similarity=0.180  Sum_probs=95.2

Q ss_pred             ccCCCccceEeecCCeEEEEEEeCC-CcEEEEEEeccccCC----------------------------h----hhH---
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASS----------------------------Q----QKD---  551 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~~~~-g~~vAvK~l~~~~~~----------------------------~----~~~---  551 (689)
                      ...|+. +.||+|++|+||+|++++ |+.||||+++.....                            .    +..   
T Consensus       119 F~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l  197 (537)
T PRK04750        119 FDDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTL  197 (537)
T ss_pred             HHhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHH
Confidence            456776 789999999999999887 999999998643100                            0    001   


Q ss_pred             ---HHHHHHHHHHhcCC----CCCcceecEEEEe-CCeEEEEEeccCCCCHHHH--HhcCcccCCCCCHHHHHHHHHHHH
Q 005587          552 ---DEFLELVNNIDRIR----HANIVELKGYCAE-HGQRLLIYEYCSNGTLQDM--LHSDDELKNNLSWNTRIRMALGAA  621 (689)
Q Consensus       552 ---~~~~~e~~~l~~l~----HpnIv~l~~~~~~-~~~~~lV~Ey~~ggsL~~~--l~~~~~~~~~l~~~~~~~i~~qia  621 (689)
                         -+|.+|...+.+++    +.+.+.+-..|.+ ....+|||||+.|+.+.++  +...+.....+....+..++.|+ 
T Consensus       198 ~~ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~~Qi-  276 (537)
T PRK04750        198 HDELDLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQV-  276 (537)
T ss_pred             HHhhCHHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHHHHHHH-
Confidence               12344444444442    4444444333333 4567899999999999875  22211000112222222233333 


Q ss_pred             HHHHHHHhCCCCCcEEecccCCCeEecCCC----cEEEEeecCCccccCC
Q 005587          622 RALEYLHEICQPPIVHRNFKSANILLDDDL----AVSVSDCGLAPLISSG  667 (689)
Q Consensus       622 ~aL~yLH~~~~~~iiHrDlKp~NILl~~~~----~~kl~DFGla~~~~~~  667 (689)
                            +..   +++|+|+||.||+++.++    .++++|||++..+.+.
T Consensus       277 ------f~~---GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~~~  317 (537)
T PRK04750        277 ------FRD---GFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLNKE  317 (537)
T ss_pred             ------HhC---CeeeCCCChHHeEEecCCCCCCeEEEEecceEEECCHH
Confidence                  223   899999999999999888    9999999999987554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.37  E-value=5.6e-14  Score=157.10  Aligned_cols=157  Identities=29%  Similarity=0.437  Sum_probs=131.3

Q ss_pred             ccCccccCCCCCCEEEccCCcCCCCCCCccc---------------------------cccccccccCccCCCCCCcccC
Q 005587           94 ELGENLGAFSSIRVIDLSNNHIGGSIPSILP---------------------------VTMQNFFLSDNQFSGSIPSSLA  146 (689)
Q Consensus        94 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~---------------------------~~L~~L~Ls~N~l~~~~p~~~~  146 (689)
                      .+|+.+..++.|++|||..|+|...++..+.                           ..|+.|+|.+|+|+...=+.|.
T Consensus       301 yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~  380 (1081)
T KOG0618|consen  301 YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV  380 (1081)
T ss_pred             hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc
Confidence            4777788899999999999999843332211                           3477899999999988877899


Q ss_pred             CCCCccEEEccCCcCCCCCCh-hhcCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccccccccccCCcc-cccc
Q 005587          147 TLTLLTDMSLNNNLLSGEIPD-AFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP-LRDL  224 (689)
Q Consensus       147 ~l~~L~~L~Ls~N~l~g~~p~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L  224 (689)
                      +..+|+.|+|++|+|. .+|+ .+.++..|+.|+||+|+|+ .+|..+.++..|++|...+|+|...| .+..++ |+.+
T Consensus       381 ~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~l  457 (1081)
T KOG0618|consen  381 NFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVL  457 (1081)
T ss_pred             cccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEE
Confidence            9999999999999998 6665 5789999999999999999 89999999999999999999999888 555555 9999


Q ss_pred             ccccccCCC-CCcccc--CCCCCccccCCcCC
Q 005587          225 NIENNLFSG-PIPEKM--LQIPNFRKDGNPFN  253 (689)
Q Consensus       225 ~Ls~N~l~g-~ip~~l--~~l~~l~~~~N~~~  253 (689)
                      ||+.|+|+- .+|...  .+|+.|+++||.+.
T Consensus       458 DlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  458 DLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             ecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence            999999973 445443  47889999999863

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.36  E-value=2e-12  Score=148.86  Aligned_cols=153  Identities=24%  Similarity=0.378  Sum_probs=81.9

Q ss_pred             CeEEEEecCCCCCcccCccccCCCCCCEEEccCCcCCCCCCCccccccccccccCccCCCCCCcccCCCCCccEEEccCC
Q 005587           80 DIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNN  159 (689)
Q Consensus        80 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  159 (689)
                      +++.|+|.+|+|+. +|.   .+++|++|+|++|+|+. +|. +..+|+.|+|++|.|+ .+|..+   .+|+.|+|++|
T Consensus       223 ~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~-lp~sL~~L~Ls~N~L~-~Lp~lp---~~L~~L~Ls~N  292 (788)
T PRK15387        223 HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV-LPPGLLELSIFSNPLT-HLPALP---SGLCKLWIFGN  292 (788)
T ss_pred             CCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccC-cccccceeeccCCchh-hhhhch---hhcCEEECcCC
Confidence            45555666665553 332   13556666666666653 332 2345666666666655 333322   34556666666


Q ss_pred             cCCCCCChhhcCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccccccccccCCccccccccccccCCCCCcccc
Q 005587          160 LLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLPLRDLNIENNLFSGPIPEKM  239 (689)
Q Consensus       160 ~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~L~~L~Ls~N~l~g~ip~~l  239 (689)
                      +|+ .+|.   .+++|+.|+|++|+|++ +|...   .+|+.|++++|+|++.+...  ..|+.|+|++|+|+ .+|...
T Consensus       293 ~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~~LP~lp--~~Lq~LdLS~N~Ls-~LP~lp  361 (788)
T PRK15387        293 QLT-SLPV---LPPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLTSLPTLP--SGLQELSVSDNQLA-SLPTLP  361 (788)
T ss_pred             ccc-cccc---cccccceeECCCCcccc-CCCCc---ccccccccccCccccccccc--cccceEecCCCccC-CCCCCC
Confidence            666 3443   23567777777777763 44322   24555566666665543211  12666666666666 345444


Q ss_pred             CCCCCccccCCcCC
Q 005587          240 LQIPNFRKDGNPFN  253 (689)
Q Consensus       240 ~~l~~l~~~~N~~~  253 (689)
                      .++..|.+.+|.+.
T Consensus       362 ~~L~~L~Ls~N~L~  375 (788)
T PRK15387        362 SELYKLWAYNNRLT  375 (788)
T ss_pred             cccceehhhccccc
Confidence            55555566666554

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.33  E-value=3.3e-13  Score=131.51  Aligned_cols=165  Identities=20%  Similarity=0.332  Sum_probs=130.9

Q ss_pred             ccceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccCCC
Q 005587          513 QENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNG  592 (689)
Q Consensus       513 ~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~gg  592 (689)
                      ...+|.+...|..|+|++. |..+++|++..........++|.+|.-.|+...||||..+++.|.......++..||+-|
T Consensus       194 l~tkl~e~hsgelwrgrwq-gndivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacnsppnlv~isq~mp~g  272 (448)
T KOG0195|consen  194 LITKLAESHSGELWRGRWQ-GNDIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYMPFG  272 (448)
T ss_pred             hhhhhccCCCccccccccc-CcchhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeeccch
Confidence            3456888999999999995 556778888777666677789999999999999999999999999999999999999999


Q ss_pred             CHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccc-cCCCcce
Q 005587          593 TLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI-SSGSVSQ  671 (689)
Q Consensus       593 sL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~-~~~~~~~  671 (689)
                      +|+.++++..  ...++-.++++++.+||+|++|||+.. +-|.---|....+++|++.+++|+ .+-+++- ++..   
T Consensus       273 slynvlhe~t--~vvvd~sqav~faldiargmaflhsle-p~ipr~~lns~hvmidedltaris-mad~kfsfqe~g---  345 (448)
T KOG0195|consen  273 SLYNVLHEQT--SVVVDHSQAVRFALDIARGMAFLHSLE-PMIPRFYLNSKHVMIDEDLTARIS-MADTKFSFQEVG---  345 (448)
T ss_pred             HHHHHHhcCc--cEEEecchHHHHHHHHHhhHHHHhhcc-hhhhhhhcccceEEecchhhhhee-cccceeeeeccc---
Confidence            9999999854  334667789999999999999999983 335555789999999999988763 2222321 1111   


Q ss_pred             eecccceEEeccccc
Q 005587          672 VSHNLTIMRAGGVTH  686 (689)
Q Consensus       672 ~~~~~~~~~apE~~~  686 (689)
                       ..-.+.||+||.+.
T Consensus       346 -r~y~pawmspealq  359 (448)
T KOG0195|consen  346 -RAYSPAWMSPEALQ  359 (448)
T ss_pred             -cccCcccCCHHHHh
Confidence             12346689999873

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.28  E-value=1e-11  Score=118.93  Aligned_cols=131  Identities=20%  Similarity=0.140  Sum_probs=95.4

Q ss_pred             ceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcc-eecEEEEeCCeEEEEEeccCCCC
Q 005587          515 NLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV-ELKGYCAEHGQRLLIYEYCSNGT  593 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv-~l~~~~~~~~~~~lV~Ey~~ggs  593 (689)
                      +.|+.|.++.||+++.. ++.|++|.......   ....+..|++.+..+.+.+++ +++.+.  .+..++||||++|.+
T Consensus         4 ~~l~~G~~~~vy~~~~~-~~~~~lK~~~~~~~---~~~~~~~E~~~l~~l~~~~~~P~~~~~~--~~~~~lv~e~i~G~~   77 (170)
T cd05151           4 SPLKGGMTNKNYRVEVA-NKKYVVRIPGNGTE---LLINRENEAENSKLAAEAGIGPKLYYFD--PETGVLITEFIEGSE   77 (170)
T ss_pred             eecCCcccCceEEEEEC-CeEEEEEeCCCCcc---cccCHHHHHHHHHHHHHhCCCCceEEEe--CCCCeEEEEecCCCc
Confidence            56789999999999864 77899998754321   123456788888877665544 444443  334589999999988


Q ss_pred             HHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCC--CCCcEEecccCCCeEecCCCcEEEEeecCCccc
Q 005587          594 LQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEIC--QPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI  664 (689)
Q Consensus       594 L~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~--~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~  664 (689)
                      +.+. .           .....++.+++++|..||...  ...++|+|++|.||+++ ++.++++|||.+..-
T Consensus        78 l~~~-~-----------~~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~~  137 (170)
T cd05151          78 LLTE-D-----------FSDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGMN  137 (170)
T ss_pred             cccc-c-----------ccCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccCC
Confidence            7542 0           011245678999999999873  12369999999999999 668999999998864

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>PLN03150 hypothetical protein; Provisional

Probab=99.23  E-value=1.6e-11  Score=141.34  Aligned_cols=107  Identities=31%  Similarity=0.526  Sum_probs=92.2

Q ss_pred             CccEEEccCCcCCCCCChhhcCCCCCCEEEccCCCCCCCCCCCccCCcccceeeccccccccccc-ccCCcc-ccccccc
Q 005587          150 LLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLD-VLQDLP-LRDLNIE  227 (689)
Q Consensus       150 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-L~~L~Ls  227 (689)
                      .++.|+|++|.|.|.+|..|+.|++|+.|+|++|+|+|.+|..++.|++|+.|+|++|+|+|.++ .+..+. |+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999998764 566666 9999999


Q ss_pred             cccCCCCCccccCCC----CCccccCCcCCCCC
Q 005587          228 NNLFSGPIPEKMLQI----PNFRKDGNPFNSTV  256 (689)
Q Consensus       228 ~N~l~g~ip~~l~~l----~~l~~~~N~~~~~~  256 (689)
                      +|+|+|.+|..+..+    ..+.+.+|+..|+.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~  531 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI  531 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCC
Confidence            999999999877543    35678888888753

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=99.22  E-value=9.3e-11  Score=113.94  Aligned_cols=139  Identities=15%  Similarity=0.149  Sum_probs=97.7

Q ss_pred             ceEeecCCeEEEEEEeCC-------CcEEEEEEeccccC-----------C---------hhhHHHH----HHHHHHHhc
Q 005587          515 NLIGAGMLGSVYRAQLPD-------GKLLAVKKLDKRAS-----------S---------QQKDDEF----LELVNNIDR  563 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~~~-------g~~vAvK~l~~~~~-----------~---------~~~~~~~----~~e~~~l~~  563 (689)
                      ..||.|.=+.||.|...+       +..+|||+.+....           +         ......+    .+|.+.|.+
T Consensus         3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~r   82 (197)
T cd05146           3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKR   82 (197)
T ss_pred             CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            468999999999996543       47999998743210           0         0001122    278888888


Q ss_pred             CCC--CCcceecEEEEeCCeEEEEEeccCCCCHHH-HHhcCcccCCCCCHHHHHHHHHHHHHHHHHH-HhCCCCCcEEec
Q 005587          564 IRH--ANIVELKGYCAEHGQRLLIYEYCSNGTLQD-MLHSDDELKNNLSWNTRIRMALGAARALEYL-HEICQPPIVHRN  639 (689)
Q Consensus       564 l~H--pnIv~l~~~~~~~~~~~lV~Ey~~ggsL~~-~l~~~~~~~~~l~~~~~~~i~~qia~aL~yL-H~~~~~~iiHrD  639 (689)
                      +..  -++...+++    ...++||||+.++.+.. .++.     ..++......+..+++.+|.++ |..   +|||+|
T Consensus        83 l~~~Gv~vP~pi~~----~~~~lvME~Ig~~~~~~~~Lkd-----~~~~~~~~~~i~~~i~~~l~~l~H~~---glVHGD  150 (197)
T cd05146          83 MQKAGIPCPEVVVL----KKHVLVMSFIGDDQVPAPKLKD-----AKLNDEEMKNAYYQVLSMMKQLYKEC---NLVHAD  150 (197)
T ss_pred             HHHcCCCCCeEEEe----cCCEEEEEEcCCCCccchhhhc-----cccCHHHHHHHHHHHHHHHHHHHHhC---CeecCC
Confidence            753  455566654    45689999997754422 2322     1234455667789999999999 665   899999


Q ss_pred             ccCCCeEecCCCcEEEEeecCCccccC
Q 005587          640 FKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       640 lKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      |++.|||++ ++.+.|+|||.|.....
T Consensus       151 Ls~~NIL~~-~~~v~iIDF~qav~~~h  176 (197)
T cd05146         151 LSEYNMLWH-DGKVWFIDVSQSVEPTH  176 (197)
T ss_pred             CCHHHEEEE-CCcEEEEECCCceeCCC
Confidence            999999997 46799999999887653

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.20  E-value=2e-11  Score=125.13  Aligned_cols=112  Identities=26%  Similarity=0.320  Sum_probs=81.6

Q ss_pred             CCCCcceecEEEEeC---------------------------CeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHH
Q 005587          565 RHANIVELKGYCAEH---------------------------GQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMA  617 (689)
Q Consensus       565 ~HpnIv~l~~~~~~~---------------------------~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~  617 (689)
                      +|||||.+.++|.+.                           ...|+||.-... +|.+++...     ..+......|.
T Consensus       274 ~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~~-tLr~yl~~~-----~~s~r~~~~~l  347 (598)
T KOG4158|consen  274 KHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYRQ-TLREYLWTR-----HRSYRTGRVIL  347 (598)
T ss_pred             CCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcchh-hHHHHHhcC-----CCchHHHHHHH
Confidence            699999998876432                           356899988754 999998753     34555667788


Q ss_pred             HHHHHHHHHHHhCCCCCcEEecccCCCeEe--cCCC--cEEEEeecCCccccC------CCcceeeccc-ceEEecccc
Q 005587          618 LGAARALEYLHEICQPPIVHRNFKSANILL--DDDL--AVSVSDCGLAPLISS------GSVSQVSHNL-TIMRAGGVT  685 (689)
Q Consensus       618 ~qia~aL~yLH~~~~~~iiHrDlKp~NILl--~~~~--~~kl~DFGla~~~~~------~~~~~~~~~~-~~~~apE~~  685 (689)
                      .|+++|+.|||.+   +|.|||+|.+|||+  |+|+  .+.|+|||.+---..      -+......++ --.|||||.
T Consensus       348 aQlLEav~hL~~h---gvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPEi~  423 (598)
T KOG4158|consen  348 AQLLEAVTHLHKH---GVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPEIA  423 (598)
T ss_pred             HHHHHHHHHHHHc---cchhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceecchhhh
Confidence            9999999999987   89999999999998  4444  468999996532111      1222222333 448899986

>PLN03210 Resistant to P

Probab=99.19  E-value=8.6e-11  Score=144.71  Aligned_cols=88  Identities=22%  Similarity=0.351  Sum_probs=44.2

Q ss_pred             CCeEEEEecCCCCCcccCccccCCCCCCEEEccCCcCCCCCCCccc-cccccccccCccCCCCCCcccCCCCCccEEEcc
Q 005587           79 SDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP-VTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLN  157 (689)
Q Consensus        79 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  157 (689)
                      .+++.|+|.+|.|. .++..+..+++|+.|+|++|...+.+|..-. .+|+.|+|++|.....+|..+.++++|+.|+|+
T Consensus       611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~  689 (1153)
T PLN03210        611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS  689 (1153)
T ss_pred             cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence            35556666665554 3455555555666666655443334443221 455555555554444555555555555555555


Q ss_pred             CCcCCCCCCh
Q 005587          158 NNLLSGEIPD  167 (689)
Q Consensus       158 ~N~l~g~~p~  167 (689)
                      +|..-+.+|.
T Consensus       690 ~c~~L~~Lp~  699 (1153)
T PLN03210        690 RCENLEILPT  699 (1153)
T ss_pred             CCCCcCccCC
Confidence            5432234443

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.18  E-value=1.4e-12  Score=146.13  Aligned_cols=157  Identities=26%  Similarity=0.435  Sum_probs=113.9

Q ss_pred             CCeEEEEecCCCCCcccCccccCCCCCCEEEccCCcCCCCCCCccc--cccccccccCccCCCCCCcccCCCCCccEEEc
Q 005587           79 SDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPSSLATLTLLTDMSL  156 (689)
Q Consensus        79 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  156 (689)
                      .++++++++.|++++ +|++++.+.+|+.|+..+|+|+ .+|..+.  .+|+.|++.+|.++ -+|.....++.|+.|+|
T Consensus       241 ~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL  317 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL  317 (1081)
T ss_pred             ccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence            468889999999986 5599999999999999999996 5555544  77888888888888 67777788888888888


Q ss_pred             cCCcCCCCCChhhc--------------------------CCCCCCEEEccCCCCCCCCCCCccCCcccceeeccccccc
Q 005587          157 NNNLLSGEIPDAFQ--------------------------SLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLS  210 (689)
Q Consensus       157 s~N~l~g~~p~~~~--------------------------~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~  210 (689)
                      ..|+|. .+|+.|.                          .+..|+.|+|.+|.|+...-+.|-+..+|+.|+|++|+|.
T Consensus       318 ~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~  396 (1081)
T KOG0618|consen  318 QSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN  396 (1081)
T ss_pred             hhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence            888886 5554221                          1234566677777776654455666777777777777777


Q ss_pred             cccc-ccCCcc-ccccccccccCCCCCccccC
Q 005587          211 GTLD-VLQDLP-LRDLNIENNLFSGPIPEKML  240 (689)
Q Consensus       211 ~~~~-~~~~l~-L~~L~Ls~N~l~g~ip~~l~  240 (689)
                      .++. .+..+. |++|+||+|+|+ .+|+.+.
T Consensus       397 ~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva  427 (1081)
T KOG0618|consen  397 SFPASKLRKLEELEELNLSGNKLT-TLPDTVA  427 (1081)
T ss_pred             cCCHHHHhchHHhHHHhcccchhh-hhhHHHH
Confidence            6663 455555 777777777777 5555443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.18  E-value=3.9e-13  Score=143.23  Aligned_cols=130  Identities=32%  Similarity=0.520  Sum_probs=64.7

Q ss_pred             eCCCeEEEEecCCCCCcccCccccCCCCCCEEEccCCcCCCCCCCccc--cccccccccCccCCCCCCcccCCCCCccEE
Q 005587           77 NASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPSSLATLTLLTDM  154 (689)
Q Consensus        77 ~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  154 (689)
                      +...++.|||+.|+++ .+|..++.|+ |+.|-+++|+++ .+|..+.  ..|..|+.+.|.+. .+|..++.|.+|+.|
T Consensus       119 ~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l  194 (722)
T KOG0532|consen  119 NLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDL  194 (722)
T ss_pred             hhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHH
Confidence            3344455555555554 3444444443 455555555554 3333333  44445555555555 444555555555555


Q ss_pred             EccCCcCCCCCChhhcCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccccccc
Q 005587          155 SLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTL  213 (689)
Q Consensus       155 ~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~  213 (689)
                      ++..|++. .+|.++..|+ |..||+|+|+++ .+|-.|.+|..|++|.|.+|.|...+
T Consensus       195 ~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPP  250 (722)
T KOG0532|consen  195 NVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPP  250 (722)
T ss_pred             HHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCCh
Confidence            55555555 4444444333 555555555555 45555555555555555555555444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.16  E-value=2.3e-12  Score=136.65  Aligned_cols=176  Identities=23%  Similarity=0.358  Sum_probs=129.0

Q ss_pred             CCCeEEEEecCCCCCcccCccccCCCC---CCEEEccCCcCCCCC----CCccc---cccccccccCccCCCC----CCc
Q 005587           78 ASDIIAIILNGANLGGELGENLGAFSS---IRVIDLSNNHIGGSI----PSILP---VTMQNFFLSDNQFSGS----IPS  143 (689)
Q Consensus        78 ~~~l~~L~L~~n~l~g~~p~~l~~l~~---L~~L~Ls~N~l~~~~----p~~~~---~~L~~L~Ls~N~l~~~----~p~  143 (689)
                      ..+++.|+|++|.+.+..+..+..+..   |++|+|++|++++..    ...+.   .+|+.|+|++|.+++.    ++.
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            458999999999998877777766666   999999999988421    11121   5789999999999843    344


Q ss_pred             ccCCCCCccEEEccCCcCCCC----CChhhcCCCCCCEEEccCCCCCCC----CCCCccCCcccceeecccccccccc--
Q 005587          144 SLATLTLLTDMSLNNNLLSGE----IPDAFQSLTGLINLDLSSNNLSGE----LPPSLENLSQLTTLHLQNNQLSGTL--  213 (689)
Q Consensus       144 ~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~Ls~N~l~~~~--  213 (689)
                      .+..+.+|+.|+|++|.+++.    ++..+..+++|+.|+|++|.+++.    +...+..+++|++|++++|.+++..  
T Consensus       160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~  239 (319)
T cd00116         160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA  239 (319)
T ss_pred             HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence            567778899999999999852    444566778999999999998743    3445667889999999999988521  


Q ss_pred             c---ccC--CccccccccccccCCC----CCcc---ccCCCCCccccCCcCC
Q 005587          214 D---VLQ--DLPLRDLNIENNLFSG----PIPE---KMLQIPNFRKDGNPFN  253 (689)
Q Consensus       214 ~---~~~--~l~L~~L~Ls~N~l~g----~ip~---~l~~l~~l~~~~N~~~  253 (689)
                      .   .+.  ...|++|++++|.++.    .+..   .+.++..+++++|.+.
T Consensus       240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            1   111  1349999999999872    1222   2345677788888776

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=99.16  E-value=1.8e-10  Score=115.13  Aligned_cols=143  Identities=21%  Similarity=0.308  Sum_probs=108.8

Q ss_pred             ceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCC--CcceecEEEEeC---CeEEEEEecc
Q 005587          515 NLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHA--NIVELKGYCAEH---GQRLLIYEYC  589 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~Hp--nIv~l~~~~~~~---~~~~lV~Ey~  589 (689)
                      +.|+.|.++.||+++..+|+.+++|........ .....+..|.++++.+++.  ++.+++.+....   +..++||||+
T Consensus         4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~-~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~i   82 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALL-PSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMERV   82 (223)
T ss_pred             eecCCCccceEEEEEecCCcceEEEeCCCcccC-cccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEEe
Confidence            568999999999998877789999987543321 1345678889999888763  456677776654   3678999999


Q ss_pred             CCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCC--------------------------------------
Q 005587          590 SNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEIC--------------------------------------  631 (689)
Q Consensus       590 ~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~--------------------------------------  631 (689)
                      +|+++.+.+..     ..++......++.+++++|.+||+..                                      
T Consensus        83 ~G~~l~~~~~~-----~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (223)
T cd05154          83 DGRVLRDRLLR-----PELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEPPAM  157 (223)
T ss_pred             CCEecCCCCCC-----CCCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhcccccHHH
Confidence            99888765421     24566777788888888888888531                                      


Q ss_pred             ---------------CCCcEEecccCCCeEecC--CCcEEEEeecCCcc
Q 005587          632 ---------------QPPIVHRNFKSANILLDD--DLAVSVSDCGLAPL  663 (689)
Q Consensus       632 ---------------~~~iiHrDlKp~NILl~~--~~~~kl~DFGla~~  663 (689)
                                     ...++|+|+++.||+++.  ++.+.|+||+.+..
T Consensus       158 ~~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~  206 (223)
T cd05154         158 ERLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATL  206 (223)
T ss_pred             HHHHHHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEecccccc
Confidence                           135799999999999998  66789999998875

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.16  E-value=4.5e-12  Score=134.34  Aligned_cols=175  Identities=23%  Similarity=0.333  Sum_probs=125.1

Q ss_pred             CCeEEEEecCCCCCc------ccCccccCCCCCCEEEccCCcCCCCCCCccc--cc---cccccccCccCCC----CCCc
Q 005587           79 SDIIAIILNGANLGG------ELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VT---MQNFFLSDNQFSG----SIPS  143 (689)
Q Consensus        79 ~~l~~L~L~~n~l~g------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~--~~---L~~L~Ls~N~l~~----~~p~  143 (689)
                      ..++.|+++++.+.+      .++..+..+++|+.|+|++|.+.+..+..+.  ..   |++|++++|++++    .+..
T Consensus        51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~  130 (319)
T cd00116          51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK  130 (319)
T ss_pred             CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence            457888888887762      3455677888999999999999865555444  33   9999999999873    3334


Q ss_pred             ccCCC-CCccEEEccCCcCCCC----CChhhcCCCCCCEEEccCCCCCCC----CCCCccCCcccceeecccccccccc-
Q 005587          144 SLATL-TLLTDMSLNNNLLSGE----IPDAFQSLTGLINLDLSSNNLSGE----LPPSLENLSQLTTLHLQNNQLSGTL-  213 (689)
Q Consensus       144 ~~~~l-~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~Ls~N~l~~~~-  213 (689)
                      .+..+ ++|+.|+|++|.+++.    ++..+..+.+|+.|+|++|.+++.    ++..+..+++|+.|+|++|.+++.. 
T Consensus       131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  210 (319)
T cd00116         131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA  210 (319)
T ss_pred             HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence            55666 8899999999999843    344567778899999999998842    3334555678999999999887432 


Q ss_pred             ----cccCCcc-ccccccccccCCCCCc----cc----cCCCCCccccCCcCC
Q 005587          214 ----DVLQDLP-LRDLNIENNLFSGPIP----EK----MLQIPNFRKDGNPFN  253 (689)
Q Consensus       214 ----~~~~~l~-L~~L~Ls~N~l~g~ip----~~----l~~l~~l~~~~N~~~  253 (689)
                          ..+..++ |++|++++|.+++...    ..    ..+|..|++.+|.+.
T Consensus       211 ~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         211 SALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             HHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence                2233344 8999999999885222    12    246777788887664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.15  E-value=1.1e-10  Score=119.49  Aligned_cols=169  Identities=20%  Similarity=0.258  Sum_probs=105.7

Q ss_pred             CCccceEeecCCeEEEEEEe-CCCcEEEEEEecccc-CChhhHHHHHHHHHHHhcCCC----------CCcceecEEEE-
Q 005587          511 FSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRA-SSQQKDDEFLELVNNIDRIRH----------ANIVELKGYCA-  577 (689)
Q Consensus       511 f~~~~~iG~G~~G~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~~~~~e~~~l~~l~H----------pnIv~l~~~~~-  577 (689)
                      +...+.||.|+++.||.+.+ .+|+.+|||+..... ......+++.+|.-....+.+          -.++-.++... 
T Consensus        14 l~~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~~i   93 (288)
T PF14531_consen   14 LVRGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLLRI   93 (288)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEEEE
T ss_pred             EEEccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEEEE
Confidence            34568899999999999966 469999999875443 223345667777655544332          12222222221 


Q ss_pred             --------eC---C-----eEEEEEeccCCCCHHHHHhc---CcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEe
Q 005587          578 --------EH---G-----QRLLIYEYCSNGTLQDMLHS---DDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHR  638 (689)
Q Consensus       578 --------~~---~-----~~~lV~Ey~~ggsL~~~l~~---~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHr  638 (689)
                              ..   +     ..+++|+-+ .+||.+++..   .......+....++.+..|+++.+++||+.   +|+|+
T Consensus        94 ~~~~~~~~~~~~~~~~~v~n~~~l~P~~-~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~---GlVHg  169 (288)
T PF14531_consen   94 PGKPPFFERGPGQSIYWVLNRFLLMPRA-QGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHSY---GLVHG  169 (288)
T ss_dssp             TTS-SEEEECETTEEEEEESEEEEEE---SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT---TEEES
T ss_pred             cCCCcceecCCCCccceeehhhhccchh-hhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhhc---ceEec
Confidence                    11   1     236788877 4589888653   111112234455677779999999999998   89999


Q ss_pred             cccCCCeEecCCCcEEEEeecCCccccCCCcceeecccceEEecccc
Q 005587          639 NFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSHNLTIMRAGGVT  685 (689)
Q Consensus       639 DlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~apE~~  685 (689)
                      ||||+|++++.+|.++|+||+.....++....  ...+..|.+||+.
T Consensus       170 di~~~nfll~~~G~v~Lg~F~~~~r~g~~~~~--~~~~~~~~PPe~~  214 (288)
T PF14531_consen  170 DIKPENFLLDQDGGVFLGDFSSLVRAGTRYRC--SEFPVAFTPPELE  214 (288)
T ss_dssp             T-SGGGEEE-TTS-EEE--GGGEEETTEEEEG--GGS-TTTS-HHHH
T ss_pred             ccceeeEEEcCCCCEEEcChHHHeecCceeec--cCCCcccCChhhh
Confidence            99999999999999999999877765443322  3445678888876

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.13  E-value=6.5e-10  Score=104.41  Aligned_cols=136  Identities=22%  Similarity=0.320  Sum_probs=102.4

Q ss_pred             ceEeecCCeEEEEEEeCCCcEEEEEE-eccccCChh-----hHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEec
Q 005587          515 NLIGAGMLGSVYRAQLPDGKLLAVKK-LDKRASSQQ-----KDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~~~g~~vAvK~-l~~~~~~~~-----~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey  588 (689)
                      ..+++|+=+.+|.+.+.+ ..+++|. +++..-.+.     ..+.-.+|.+++.+++--.|..-.=|..+.+...|+|||
T Consensus         2 ~~i~~GAEa~i~~~~~~g-~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~I~me~   80 (204)
T COG3642           2 DLIKQGAEAIIYLTDFLG-LPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPDNGLIVMEY   80 (204)
T ss_pred             chhhCCcceeEEeeeccC-cceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCEEEEEE
Confidence            357899999999997744 3466664 333322121     234556889999888766666555566777888999999


Q ss_pred             cCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccC
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       589 ~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  666 (689)
                      ++|-.|.+.+...           ...++..|-.-+.-||..   +|+|+||.++||++..+. +.++||||+.+-..
T Consensus        81 I~G~~lkd~l~~~-----------~~~~~r~vG~~vg~lH~~---givHGDLTtsNiIl~~~~-i~~IDfGLg~~s~~  143 (204)
T COG3642          81 IEGELLKDALEEA-----------RPDLLREVGRLVGKLHKA---GIVHGDLTTSNIILSGGR-IYFIDFGLGEFSDE  143 (204)
T ss_pred             eCChhHHHHHHhc-----------chHHHHHHHHHHHHHHhc---CeecCCCccceEEEeCCc-EEEEECCccccccc
Confidence            9999998888752           245677777888899998   899999999999998775 89999999996543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.07  E-value=1.4e-11  Score=121.85  Aligned_cols=126  Identities=24%  Similarity=0.298  Sum_probs=79.6

Q ss_pred             cccccccccCccCCCCCCcccCCCCCccEEEccCCcCCCCCChhhcCCCCCCEEEccCCCCCCCCCCCccCCcccceeec
Q 005587          125 VTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHL  204 (689)
Q Consensus       125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  204 (689)
                      ..|++||||+|.|+ .+.++..-++.++.|++|+|.|. .+. .+..|++|+.||||+|.|+ .+-.+-..|-++++|.|
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence            56777777777777 56666677777777777777776 333 3666777777777777776 45555566677777777


Q ss_pred             ccccccccccccCCccccccccccccCCCCCc-cccCCCCC---ccccCCcCCC
Q 005587          205 QNNQLSGTLDVLQDLPLRDLNIENNLFSGPIP-EKMLQIPN---FRKDGNPFNS  254 (689)
Q Consensus       205 s~N~l~~~~~~~~~l~L~~L~Ls~N~l~g~ip-~~l~~l~~---l~~~~N~~~~  254 (689)
                      +.|.|...-..-+..+|..||+++|++...-- ..+++|+-   +.+.+||+..
T Consensus       360 a~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  360 AQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            77776543322222347777777777752111 23445444   4567777654

>PLN03210 Resistant to P

Probab=99.06  E-value=5.3e-10  Score=137.80  Aligned_cols=172  Identities=19%  Similarity=0.243  Sum_probs=130.7

Q ss_pred             CCeEEEEecCC------CCCcccCccccCCC-CCCEEEccCCcCCCCCCCccc-cccccccccCccCCCCCCcccCCCCC
Q 005587           79 SDIIAIILNGA------NLGGELGENLGAFS-SIRVIDLSNNHIGGSIPSILP-VTMQNFFLSDNQFSGSIPSSLATLTL  150 (689)
Q Consensus        79 ~~l~~L~L~~n------~l~g~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~-~~L~~L~Ls~N~l~~~~p~~~~~l~~  150 (689)
                      .++..|.+..+      ++...+|+.|..++ +|+.|++.+|.+. .+|..+. .+|+.|+|++|+|. .++..+..+++
T Consensus       558 ~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f~~~~L~~L~L~~s~l~-~L~~~~~~l~~  635 (1153)
T PLN03210        558 RNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNFRPENLVKLQMQGSKLE-KLWDGVHSLTG  635 (1153)
T ss_pred             ccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcCCccCCcEEECcCcccc-ccccccccCCC
Confidence            34555655443      33445777777775 5899999998887 5565555 78999999999988 67888889999


Q ss_pred             ccEEEccCCcCCCCCChhhcCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccc-cccccccccCCccccccccccc
Q 005587          151 LTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNN-QLSGTLDVLQDLPLRDLNIENN  229 (689)
Q Consensus       151 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~L~~L~Ls~N  229 (689)
                      |+.|+|++|...+.+|. +..+++|+.|+|++|.....+|..+.+|++|+.|+|++| .+...+..+....|+.|+|++|
T Consensus       636 Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc  714 (1153)
T PLN03210        636 LRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGC  714 (1153)
T ss_pred             CCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCC
Confidence            99999998776567774 888899999999988766688999999999999999986 4554444443233888999888


Q ss_pred             cCCCCCccccCCCCCccccCCcCC
Q 005587          230 LFSGPIPEKMLQIPNFRKDGNPFN  253 (689)
Q Consensus       230 ~l~g~ip~~l~~l~~l~~~~N~~~  253 (689)
                      ...+.+|....+|..|++.+|.+.
T Consensus       715 ~~L~~~p~~~~nL~~L~L~~n~i~  738 (1153)
T PLN03210        715 SRLKSFPDISTNISWLDLDETAIE  738 (1153)
T ss_pred             CCccccccccCCcCeeecCCCccc
Confidence            777778877777888888887754

syringae 6; Provisional

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.05  E-value=1.2e-10  Score=127.53  Aligned_cols=148  Identities=32%  Similarity=0.495  Sum_probs=66.3

Q ss_pred             eEEEEecCCCCCcccCccccCCC-CCCEEEccCCcCCCCC-CCccccccccccccCccCCCCCCcccCCCCCccEEEccC
Q 005587           81 IIAIILNGANLGGELGENLGAFS-SIRVIDLSNNHIGGSI-PSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNN  158 (689)
Q Consensus        81 l~~L~L~~n~l~g~~p~~l~~l~-~L~~L~Ls~N~l~~~~-p~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  158 (689)
                      ++.|++.+|.++ .+++..+.+. +|+.|++++|++.... +....++|+.|++++|+++ .+|...+.+++|+.|++++
T Consensus       118 l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~  195 (394)
T COG4886         118 LTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSG  195 (394)
T ss_pred             eeEEecCCcccc-cCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccC
Confidence            444444444444 2333344442 4455555555444221 1112244444555555544 3333333444444555555


Q ss_pred             CcCCCCCChhhcCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccccccccccCCcc-ccccccccccCC
Q 005587          159 NLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP-LRDLNIENNLFS  232 (689)
Q Consensus       159 N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~Ls~N~l~  232 (689)
                      |+++ .+|..+..+..|+.|++++|++. .++..+.++.++..|.+.+|++...+..+..+. ++.|++++|+++
T Consensus       196 N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~  268 (394)
T COG4886         196 NKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS  268 (394)
T ss_pred             Cccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccchhccccccceecccccccc
Confidence            5554 44443333344445555444322 233444444455555555555444333333333 555666666555

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.03  E-value=5.5e-11  Score=135.56  Aligned_cols=166  Identities=19%  Similarity=0.184  Sum_probs=123.5

Q ss_pred             CCCccceEeecCCeEEEEEEeCCCcEEEEEEeccccC--ChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEe
Q 005587          510 SFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRAS--SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~--~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~E  587 (689)
                      +|...+.||.+.|=+|.+|+.++|. |+||++-+...  +-....+-++|++ ..-++|||.+.+.-+-......|||=+
T Consensus        24 e~~~~~~LGstRFlKv~r~k~~eG~-vVvKVFvk~~p~~sL~~~~qrL~~ik-~~l~~~pn~lPfqk~~~t~kAAylvRq  101 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKDREGL-VVVKVFVKQDPTISLRPFKQRLEEIK-FALMKAPNCLPFQKVLVTDKAAYLVRQ  101 (1431)
T ss_pred             ceeeecccCchhhhhhhhccCCCce-EEEEEEeccCCCCCchHHHHHHHHHH-HHhhcCCcccchHHHHHhhHHHHHHHH
Confidence            4666788999999999999988887 89998765431  1122233334444 566789999998777666777788989


Q ss_pred             ccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCc--ccc
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAP--LIS  665 (689)
Q Consensus       588 y~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~--~~~  665 (689)
                      |+.+ +|+|.|..    +.-+..-+.+-|+.|++.||.-+|..   +|.|+|||.+|||+..-.-+.|+||.--|  .+.
T Consensus       102 yvkh-nLyDRlST----RPFL~~iEKkWiaFQLL~al~qcH~~---gVcHGDIKsENILiTSWNW~~LtDFAsFKPtYLP  173 (1431)
T KOG1240|consen  102 YVKH-NLYDRLST----RPFLVLIEKKWIAFQLLKALSQCHKL---GVCHGDIKSENILITSWNWLYLTDFASFKPTYLP  173 (1431)
T ss_pred             HHhh-hhhhhhcc----chHHHHHHHHHHHHHHHHHHHHHHHc---CccccccccceEEEeeechhhhhcccccCCccCC
Confidence            9965 99999875    33456667778999999999999998   89999999999999998889999997544  222


Q ss_pred             CCCcc-----ee-ecccceEEecccc
Q 005587          666 SGSVS-----QV-SHNLTIMRAGGVT  685 (689)
Q Consensus       666 ~~~~~-----~~-~~~~~~~~apE~~  685 (689)
                      ++...     .+ ....+-|.|||-+
T Consensus       174 eDNPadf~fFFDTSrRRtCYiAPERF  199 (1431)
T KOG1240|consen  174 EDNPADFTFFFDTSRRRTCYIAPERF  199 (1431)
T ss_pred             CCCcccceEEEecCCceeeecChHhh
Confidence            22221     11 2233559999976

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.02  E-value=1.2e-10  Score=132.85  Aligned_cols=135  Identities=25%  Similarity=0.335  Sum_probs=94.5

Q ss_pred             ccCCCccceEeecCCeEEEEEEeC-CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      ..+|+.++.|..|+||.||.++++ +.+.+|+| +.+...       +.+-  ++.....|.+|                
T Consensus        82 e~df~~IklisngAygavylvrh~~trqrfa~k-iNkq~l-------ilRn--ilt~a~npfvv----------------  135 (1205)
T KOG0606|consen   82 ESDFNTIKLISNGAYGAVYLVRHKETRQRFAMK-INKQNL-------ILRN--ILTFAGNPFVV----------------  135 (1205)
T ss_pred             ccccceeEeeccCCCCceeeeeccccccchhhc-ccccch-------hhhc--cccccCCccee----------------
Confidence            357888999999999999999776 46778884 433221       1110  23333344443                


Q ss_pred             eccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcccc-
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS-  665 (689)
Q Consensus       587 Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~-  665 (689)
                           ||-.+.++..+    .++-.        ++.+++|+|+.   +|+|||+||+|.+|..-|++|++|||+.+... 
T Consensus       136 -----gDc~tllk~~g----~lPvd--------mvla~Eylh~y---givhrdlkpdnllIT~mGhiKlTDfgLsk~GLm  195 (1205)
T KOG0606|consen  136 -----GDCATLLKNIG----PLPVD--------MVLAVEYLHSY---GIVHRDLKPDNLLITSMGHIKLTDFGLSKKGLM  195 (1205)
T ss_pred             -----chhhhhcccCC----CCcch--------hhHHhHhhccC---CeecCCCCCCcceeeecccccccchhhhhhhhh
Confidence                 56666665422    23222        26799999998   89999999999999999999999999987532 


Q ss_pred             -------CCC--------cceeecccceEEeccccccC
Q 005587          666 -------SGS--------VSQVSHNLTIMRAGGVTHRN  688 (689)
Q Consensus       666 -------~~~--------~~~~~~~~~~~~apE~~~~~  688 (689)
                             ++.        ....-+++++|+||||++++
T Consensus       196 s~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPeVilrq  233 (1205)
T KOG0606|consen  196 SLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPEVILRQ  233 (1205)
T ss_pred             hccchhhhcchHHHHHHhhhccccCCccccChhhhhhh
Confidence                   111        12334889999999999865

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.99  E-value=1.5e-10  Score=126.68  Aligned_cols=155  Identities=31%  Similarity=0.479  Sum_probs=133.4

Q ss_pred             CeEEEEecCCCCCcccCccccCCCCCCEEEccCCcCCCCCCCc-cccccccccccCccCCCCCCcccCCCCCccEEEccC
Q 005587           80 DIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSI-LPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNN  158 (689)
Q Consensus        80 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  158 (689)
                      +++.|++++|.+. .+|..++.+++|+.|++++|+++...+.. ....|+.|++++|+++ .+|..+..+..|++|++++
T Consensus       141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~  218 (394)
T COG4886         141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSN  218 (394)
T ss_pred             hcccccccccchh-hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcC
Confidence            7999999999998 46678999999999999999999544444 4489999999999999 7888777778899999999


Q ss_pred             CcCCCCCChhhcCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccccccccccCCcc-ccccccccccCCCCCcc
Q 005587          159 NLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP-LRDLNIENNLFSGPIPE  237 (689)
Q Consensus       159 N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~Ls~N~l~g~ip~  237 (689)
                      |.+. .++..+.++.++..|.+++|++. .++..++.+++|++|++++|+++.... +..+. ++.|++++|.++..+|.
T Consensus       219 N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         219 NSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             Ccce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc-ccccCccCEEeccCccccccchh
Confidence            9755 67778999999999999999998 558889999999999999999998776 44444 99999999999977775


Q ss_pred             cc
Q 005587          238 KM  239 (689)
Q Consensus       238 ~l  239 (689)
                      ..
T Consensus       296 ~~  297 (394)
T COG4886         296 IA  297 (394)
T ss_pred             hh
Confidence            44

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.97  E-value=4.8e-11  Score=118.18  Aligned_cols=138  Identities=27%  Similarity=0.399  Sum_probs=112.0

Q ss_pred             CCcccCccccCCCCCCEEEccCCcCCCCCCCccc--cccccccccCccCCCCCCcccCCCCCccEEEccCCcCCCCCChh
Q 005587           91 LGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDA  168 (689)
Q Consensus        91 l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~  168 (689)
                      .+|..-..+.....|++||||+|.|+ .+.....  +.++.|++|+|.|. .+. .+..|++|+.||||+|.++ .+..+
T Consensus       272 ~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gw  347 (490)
T KOG1259|consen  272 SNGSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGW  347 (490)
T ss_pred             cCCceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhh
Confidence            34444455666778999999999998 5555544  78999999999998 333 3889999999999999998 66667


Q ss_pred             hcCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccccccc--cccCCcc-ccccccccccCCCC
Q 005587          169 FQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTL--DVLQDLP-LRDLNIENNLFSGP  234 (689)
Q Consensus       169 ~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~l~-L~~L~Ls~N~l~g~  234 (689)
                      -..|.+++.|.|+.|.|.. + ..+..|-+|..||+++|+|...-  ..++.++ |+.|.|.+|.+.+.
T Consensus       348 h~KLGNIKtL~La~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  348 HLKLGNIKTLKLAQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             HhhhcCEeeeehhhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            7788999999999999973 3 46788899999999999998644  5677888 99999999999954

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=98.97  E-value=7.3e-10  Score=120.63  Aligned_cols=122  Identities=24%  Similarity=0.437  Sum_probs=102.3

Q ss_pred             HhcCCCCCcceecEEEEeCCeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecc
Q 005587          561 IDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNF  640 (689)
Q Consensus       561 l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDl  640 (689)
                      |+.+.|.|+.+++|.+.+....+.|.+||.-|+|.|.+...   ...++|.....++++++.||+|+|.-  +--.|+.+
T Consensus         1 l~~l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~~---~~~~d~~F~~s~~rdi~~Gl~ylh~s--~i~~hg~l   75 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSNE---DIKLDYFFILSFIRDISKGLAYLHNS--PIGYHGAL   75 (484)
T ss_pred             CcccchhhhhhheeeEecCCceEEEEeeecCccHHhHHhcc---ccCccHHHHHHHHHHHHHHHHHHhcC--cceeeeee
Confidence            45788999999999999999999999999999999999863   46789999999999999999999985  22399999


Q ss_pred             cCCCeEecCCCcEEEEeecCCccccC---CCcceeecccceEEecccccc
Q 005587          641 KSANILLDDDLAVSVSDCGLAPLISS---GSVSQVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       641 Kp~NILl~~~~~~kl~DFGla~~~~~---~~~~~~~~~~~~~~apE~~~~  687 (689)
                      +..|.++|..+.+||+|||+..+..+   ............|.|||++..
T Consensus        76 ~s~nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~  125 (484)
T KOG1023|consen   76 KSSNCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRG  125 (484)
T ss_pred             ccccceeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhcc
Confidence            99999999999999999999988753   112222334456889998853

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.96  E-value=3.4e-10  Score=107.86  Aligned_cols=82  Identities=30%  Similarity=0.434  Sum_probs=21.6

Q ss_pred             ccccccccCccCCCCCCcccCCCCCccEEEccCCcCCCCCChhh-cCCCCCCEEEccCCCCCCCC-CCCccCCcccceee
Q 005587          126 TMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAF-QSLTGLINLDLSSNNLSGEL-PPSLENLSQLTTLH  203 (689)
Q Consensus       126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~-~~l~~L~~L~Ls~N~l~g~~-p~~~~~l~~L~~L~  203 (689)
                      +|+.|+|++|.|+. +. .+..+++|+.|+|++|+|+ .+...+ ..+++|+.|+|++|+|...- =..+..+++|+.|+
T Consensus        43 ~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~  119 (175)
T PF14580_consen   43 KLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS  119 (175)
T ss_dssp             T--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred             CCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence            34444444444442 21 2444555555555555555 232223 23555555555555554210 02234445555555


Q ss_pred             ccccccc
Q 005587          204 LQNNQLS  210 (689)
Q Consensus       204 Ls~N~l~  210 (689)
                      |.+|.++
T Consensus       120 L~~NPv~  126 (175)
T PF14580_consen  120 LEGNPVC  126 (175)
T ss_dssp             -TT-GGG
T ss_pred             ccCCccc
Confidence            5555444

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=98.94  E-value=1.5e-09  Score=104.41  Aligned_cols=77  Identities=27%  Similarity=0.224  Sum_probs=66.2

Q ss_pred             CCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCCcce
Q 005587          592 GTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQ  671 (689)
Q Consensus       592 gsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~  671 (689)
                      |+|.++++..   ...++|.+++.|+.|+++||.|||+.   +      ||+|||++.++.+|+  ||+++......   
T Consensus         1 GsL~~~l~~~---~~~l~~~~~~~i~~qi~~~L~~lH~~---~------kp~Nil~~~~~~~~~--fG~~~~~~~~~---   63 (176)
T smart00750        1 VSLADILEVR---GRPLNEEEIWAVCLQCLRALRELHRQ---A------KSGNILLTWDGLLKL--DGSVAFKTPEQ---   63 (176)
T ss_pred             CcHHHHHHHh---CCCCCHHHHHHHHHHHHHHHHHHHhc---C------CcccEeEcCccceee--ccceEeecccc---
Confidence            7899999753   24699999999999999999999987   3      999999999999999  99999875543   


Q ss_pred             eecccceEEeccccc
Q 005587          672 VSHNLTIMRAGGVTH  686 (689)
Q Consensus       672 ~~~~~~~~~apE~~~  686 (689)
                       ..++..|||||++.
T Consensus        64 -~~g~~~y~aPE~~~   77 (176)
T smart00750       64 -SRVDPYFMAPEVIQ   77 (176)
T ss_pred             -CCCcccccChHHhc
Confidence             25679999999985

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.93  E-value=1.4e-08  Score=94.95  Aligned_cols=146  Identities=20%  Similarity=0.242  Sum_probs=103.0

Q ss_pred             ccceEeecCCeEEEEEEeCCCcEEEEEE-eccccCC-----hhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEE
Q 005587          513 QENLIGAGMLGSVYRAQLPDGKLLAVKK-LDKRASS-----QQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       513 ~~~~iG~G~~G~Vy~~~~~~g~~vAvK~-l~~~~~~-----~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      ...+|-+|+-+.|+++.+ .|+.+.||. +.+..--     +-......+|++.+.+++--.|.--.=++.+...-.|+|
T Consensus        11 ~l~likQGAEArv~~~~~-~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~~~i~M   89 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSF-SGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYGGQIYM   89 (229)
T ss_pred             cceeeeccceeeEeeecc-CCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCeEEE
Confidence            457899999999999988 567767764 3332111     112456678999998886555544444555666667899


Q ss_pred             eccCC-CCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCC---cEEEEeecCCc
Q 005587          587 EYCSN-GTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDL---AVSVSDCGLAP  662 (689)
Q Consensus       587 Ey~~g-gsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~---~~kl~DFGla~  662 (689)
                      ||++| -++.+++.....  ...........+..|-+.+.-||..   +|||+||..+||++..++   .+.++|||++.
T Consensus        90 E~~~g~~~vk~~i~~~~~--~~~~d~~~~~~~~~iG~~igklH~n---diiHGDLTTSNill~~~~~~~~~~lIdfgls~  164 (229)
T KOG3087|consen   90 EFIDGASTVKDFILSTME--DESEDEGLAELARRIGELIGKLHDN---DIIHGDLTTSNILLRSDGNQITPILIDFGLSS  164 (229)
T ss_pred             EeccchhHHHHHHHHHcc--CcccchhHHHHHHHHHHHHHHhhhC---CeecccccccceEEecCCCcCceEEEeecchh
Confidence            99977 477888765432  1122222256788888999999987   899999999999996544   45899999987


Q ss_pred             cc
Q 005587          663 LI  664 (689)
Q Consensus       663 ~~  664 (689)
                      .-
T Consensus       165 ~s  166 (229)
T KOG3087|consen  165 VS  166 (229)
T ss_pred             cc
Confidence            54

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=98.93  E-value=1.1e-10  Score=132.75  Aligned_cols=172  Identities=22%  Similarity=0.258  Sum_probs=131.5

Q ss_pred             CCCccceEeecCCeEEEEEEeC--CCcEEEEEEeccccCChhhHHHHHHHHHHHhcCC-CCCcceecEEEEeCCeEEEEE
Q 005587          510 SFSQENLIGAGMLGSVYRAQLP--DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR-HANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       510 ~f~~~~~iG~G~~G~Vy~~~~~--~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~-HpnIv~l~~~~~~~~~~~lV~  586 (689)
                      .|.+.+.||+|+|+.|-.....  ....+|+|.+...............|..+-..+. |.|++++++.....+..++++
T Consensus        21 ~~~~~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~~~~~~~~  100 (601)
T KOG0590|consen   21 QYKLSRSIGKGSFSSSALASNSRDPESSSATKPISIPPKSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSPRSYLLSL  100 (601)
T ss_pred             cccccccccccccchhhhhhhcCCCcceeeccCCCCCCCccchhhhcCccccccccccccccccccCCccCCCccccccc
Confidence            4555667999999999888543  3456777776554322233334445666656665 999999999999999999999


Q ss_pred             eccCCCCHHHHH-hcCcccCCCCCHHHHHHHHHHHHHHHHHHH-hCCCCCcEEecccCCCeEecCCC-cEEEEeecCCcc
Q 005587          587 EYCSNGTLQDML-HSDDELKNNLSWNTRIRMALGAARALEYLH-EICQPPIVHRNFKSANILLDDDL-AVSVSDCGLAPL  663 (689)
Q Consensus       587 Ey~~ggsL~~~l-~~~~~~~~~l~~~~~~~i~~qia~aL~yLH-~~~~~~iiHrDlKp~NILl~~~~-~~kl~DFGla~~  663 (689)
                      ||..||++++.+ +...   ...+....-.+..|+..++.|+| ..   ++.|||+||+|.+++..+ ..|++|||+|..
T Consensus       101 ~~s~g~~~f~~i~~~~~---~~~~~~~~~~~~~ql~s~l~~~H~~~---~~~h~~ikP~n~~l~~s~~~l~~~df~~At~  174 (601)
T KOG0590|consen  101 SYSDGGSLFSKISHPDS---TGTSSSSASRYLPQLNSGLSYLHPEN---GVTHRDIKPSNSLLDESGSALKIADFGLATA  174 (601)
T ss_pred             CcccccccccccccCCc---cCCCCcchhhhhhhhccCccccCccc---ccccCCCCCccchhccCCCcccCCCchhhcc
Confidence            999999999988 4321   13444566788999999999999 65   899999999999999999 999999999987


Q ss_pred             ccC-CC---cceeecc-cceEEecccccc
Q 005587          664 ISS-GS---VSQVSHN-LTIMRAGGVTHR  687 (689)
Q Consensus       664 ~~~-~~---~~~~~~~-~~~~~apE~~~~  687 (689)
                      +.. ..   ......+ +..|+|||+...
T Consensus       175 ~~~~~g~~~~~~~~~g~s~~y~a~E~~~~  203 (601)
T KOG0590|consen  175 YRNKNGAERSLKDRCGSSPPYGAPEHLSG  203 (601)
T ss_pred             ccccCCcceeeecccCCCCCCCCcccccc
Confidence            765 22   2233556 788999999853

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.92  E-value=5.9e-10  Score=106.25  Aligned_cols=104  Identities=37%  Similarity=0.529  Sum_probs=40.4

Q ss_pred             cccccccccCccCCCCCCcccC-CCCCccEEEccCCcCCCCCChhhcCCCCCCEEEccCCCCCCCCCCCc-cCCccccee
Q 005587          125 VTMQNFFLSDNQFSGSIPSSLA-TLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSL-ENLSQLTTL  202 (689)
Q Consensus       125 ~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~-~~l~~L~~L  202 (689)
                      ..+++|+|++|.|+ .+. .++ .+.+|+.|+|++|.|+ .++ .+..++.|+.|+|++|+|+ .+...+ ..+++|++|
T Consensus        19 ~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   19 VKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL   93 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred             cccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence            45677777777776 343 455 5789999999999999 444 5888999999999999998 455445 468999999


Q ss_pred             ecccccccccc--cccCCcc-ccccccccccCCC
Q 005587          203 HLQNNQLSGTL--DVLQDLP-LRDLNIENNLFSG  233 (689)
Q Consensus       203 ~Ls~N~l~~~~--~~~~~l~-L~~L~Ls~N~l~g  233 (689)
                      +|++|+|...-  ..+..++ |+.|+|.+|.++.
T Consensus        94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             ECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            99999997643  3455555 8889999998873

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.89  E-value=3.1e-08  Score=101.65  Aligned_cols=143  Identities=17%  Similarity=0.096  Sum_probs=100.4

Q ss_pred             ceEeecCCeEEEEEEeCCCcEEEEEEeccccCCh---------hhHHHHHHHHHHHhcCCCCCc--ceecEEEEe-----
Q 005587          515 NLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQ---------QKDDEFLELVNNIDRIRHANI--VELKGYCAE-----  578 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~---------~~~~~~~~e~~~l~~l~HpnI--v~l~~~~~~-----  578 (689)
                      +++-+-....|++.++ +|+.|.||.........         .....+.+|.+.+.++..-+|  +..+++.+.     
T Consensus        28 e~v~~~~~rrvvr~~~-~g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~~~  106 (268)
T PRK15123         28 EVFRELEGRRTLRFEL-AGKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRLHEVGVDTMTGVAFGERGSNPA  106 (268)
T ss_pred             cEEecCCCceEEEEEE-CCEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHHHHcCCCCCCeeEEEEecCCCc
Confidence            4555555556777766 67789999764322100         001146788888877754443  344556543     


Q ss_pred             CCeEEEEEeccCCC-CHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecC-------C
Q 005587          579 HGQRLLIYEYCSNG-TLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDD-------D  650 (689)
Q Consensus       579 ~~~~~lV~Ey~~gg-sL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~-------~  650 (689)
                      ...-+||||++++- +|.+++....  ....+......++.++++.+.-||..   ||+|+|+++.|||++.       +
T Consensus       107 ~~~s~LVte~l~~~~sL~~~~~~~~--~~~~~~~~~~~ll~~la~~i~~LH~~---Gi~HgDL~~~NiLl~~~~~~~~~~  181 (268)
T PRK15123        107 TRTSFIITEDLAPTISLEDYCADWA--TNPPDPRLKRMLIKRVATMVRDMHAA---GINHRDCYICHFLLHLPFPGREED  181 (268)
T ss_pred             cceeEEEEeeCCCCccHHHHHHhhc--ccCCCHHHHHHHHHHHHHHHHHHHHC---cCccCCCChhhEEEeccccCCCCC
Confidence            23578999999886 8999885321  12345566778999999999999998   8999999999999975       4


Q ss_pred             CcEEEEeecCCcc
Q 005587          651 LAVSVSDCGLAPL  663 (689)
Q Consensus       651 ~~~kl~DFGla~~  663 (689)
                      ..+.++||+.++.
T Consensus       182 ~~~~LIDl~r~~~  194 (268)
T PRK15123        182 LKLSVIDLHRAQI  194 (268)
T ss_pred             ceEEEEECCcccc
Confidence            6899999999865

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.84  E-value=3.3e-10  Score=116.43  Aligned_cols=136  Identities=31%  Similarity=0.428  Sum_probs=85.0

Q ss_pred             CCCCccccccccccccCccCCCCCCcccCCCCCccEEEccCCcCCCCCChhhcCCCCCCEEEcc-CCCCCCCCCCCccCC
Q 005587          118 SIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLS-SNNLSGELPPSLENL  196 (689)
Q Consensus       118 ~~p~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls-~N~l~g~~p~~~~~l  196 (689)
                      .+|..++.....|+|..|+|+...|.+|+.+.+|+.||||+|.|+-+-|++|.+|.+|..|-+- +|+|+...-..|++|
T Consensus        60 eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL  139 (498)
T KOG4237|consen   60 EVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL  139 (498)
T ss_pred             cCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence            5566666666667777777776666667777777777777777776777777777766554443 377764333557777


Q ss_pred             cccceeecccccccccc-cccCCcc-ccccccccccCCCCCcc-cc---CCCCCccccCCcCCC
Q 005587          197 SQLTTLHLQNNQLSGTL-DVLQDLP-LRDLNIENNLFSGPIPE-KM---LQIPNFRKDGNPFNS  254 (689)
Q Consensus       197 ~~L~~L~Ls~N~l~~~~-~~~~~l~-L~~L~Ls~N~l~g~ip~-~l---~~l~~l~~~~N~~~~  254 (689)
                      ..|+.|.+.-|++.-.. ..+..++ +..|.+-.|.+. .++. .|   ..++.+.+.-|+|-|
T Consensus       140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~ic  202 (498)
T KOG4237|consen  140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFIC  202 (498)
T ss_pred             HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcccc
Confidence            77777777777776555 3455555 666666666665 3443 22   233445556666554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.82  E-value=2.8e-09  Score=83.57  Aligned_cols=61  Identities=43%  Similarity=0.594  Sum_probs=40.7

Q ss_pred             CCccEEEccCCcCCCCCChhhcCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccc
Q 005587          149 TLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQL  209 (689)
Q Consensus       149 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l  209 (689)
                      ++|++|+|++|+|+...+..|..+++|++|+|++|+|+...|..|.++++|++|+|++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3566677777777655445666677777777777777655556667777777777777654

...

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.82  E-value=1.9e-08  Score=97.37  Aligned_cols=129  Identities=26%  Similarity=0.300  Sum_probs=83.0

Q ss_pred             EEEEEEeCCCcEEEEEEeccccCC------------------------hhhHHHHHHHHHHHhcCCCC--CcceecEEEE
Q 005587          524 SVYRAQLPDGKLLAVKKLDKRASS------------------------QQKDDEFLELVNNIDRIRHA--NIVELKGYCA  577 (689)
Q Consensus       524 ~Vy~~~~~~g~~vAvK~l~~~~~~------------------------~~~~~~~~~e~~~l~~l~Hp--nIv~l~~~~~  577 (689)
                      .||.|...+|..+|||+.+.....                        ........+|.+.|.++..-  ++.+.+++. 
T Consensus         1 ~Vy~~~~~~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv~vP~p~~~~-   79 (188)
T PF01163_consen    1 DVYHAIDPDGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGVPVPKPYDYN-   79 (188)
T ss_dssp             EEEEEEECTTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-SS--EEEEE-
T ss_pred             CEEEEECCCCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCccCCcEEEEe-
Confidence            489999889999999987532100                        01123456899999999766  456665442 


Q ss_pred             eCCeEEEEEeccC--CCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHH-HhCCCCCcEEecccCCCeEecCCCcEE
Q 005587          578 EHGQRLLIYEYCS--NGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYL-HEICQPPIVHRNFKSANILLDDDLAVS  654 (689)
Q Consensus       578 ~~~~~~lV~Ey~~--ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yL-H~~~~~~iiHrDlKp~NILl~~~~~~k  654 (689)
                         ...|||||++  |..+..+....      ++......+..++++.+..+ |..   +|+|+||.+.|||++++ .+.
T Consensus        80 ---~~~ivME~I~~~G~~~~~l~~~~------~~~~~~~~~~~~il~~~~~~~~~~---givHGDLs~~NIlv~~~-~~~  146 (188)
T PF01163_consen   80 ---RNVIVMEYIGEDGVPLPRLKDVD------LSPEEPKELLEEILEEIIKMLHKA---GIVHGDLSEYNILVDDG-KVY  146 (188)
T ss_dssp             ---TTEEEEE--EETTEEGGCHHHCG------GGGSTHHHHHHHHHHHHHHHHHCT---TEEESS-STTSEEEETT-CEE
T ss_pred             ---CCEEEEEecCCCccchhhHHhcc------ccchhHHHHHHHHHHHHHHHHHhc---CceecCCChhhEEeecc-eEE
Confidence               3479999998  65554443321      11233456677788866665 555   89999999999999988 899


Q ss_pred             EEeecCCccccC
Q 005587          655 VSDCGLAPLISS  666 (689)
Q Consensus       655 l~DFGla~~~~~  666 (689)
                      |+|||.|.....
T Consensus       147 iIDf~qav~~~~  158 (188)
T PF01163_consen  147 IIDFGQAVDSSH  158 (188)
T ss_dssp             E--GTTEEETTS
T ss_pred             EEecCcceecCC
Confidence            999999886653

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.79  E-value=1.1e-08  Score=111.63  Aligned_cols=171  Identities=27%  Similarity=0.287  Sum_probs=131.2

Q ss_pred             cCCCccceEee--cCCeEEEEEEe---CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcC-CCCCcceecEEEEeCCeE
Q 005587          509 NSFSQENLIGA--GMLGSVYRAQL---PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHANIVELKGYCAEHGQR  582 (689)
Q Consensus       509 ~~f~~~~~iG~--G~~G~Vy~~~~---~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~~~~~  582 (689)
                      ..|.....+|.  |.+|.||.+..   +++..+|+|.-+...........=.+|.....++ .|+|.++.+..++..+..
T Consensus       114 ~~~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~~~~l  193 (524)
T KOG0601|consen  114 QRFPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKIDSHENPVRDSPAWEGSGIL  193 (524)
T ss_pred             hhcccccccccCCCCCceeecccCCcccCCcccccccccCCCCCccccccccchhhcccccCccccccccCcccccCCcc
Confidence            34666778999  99999999855   5688999998443322222222223455555555 499999999999999999


Q ss_pred             EEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHH----HHHHHHhCCCCCcEEecccCCCeEecCC-CcEEEEe
Q 005587          583 LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR----ALEYLHEICQPPIVHRNFKSANILLDDD-LAVSVSD  657 (689)
Q Consensus       583 ~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~----aL~yLH~~~~~~iiHrDlKp~NILl~~~-~~~kl~D  657 (689)
                      |+-+|+|. .+|.++.+...   ..++....+.+..+..+    ||.++|+.   +|+|-|+||+||+...+ ...+++|
T Consensus       194 fiqtE~~~-~sl~~~~~~~~---~~~p~~~l~~~~~~~~~~~~~al~~~hs~---~~~~~~~kp~~i~~~~~~~s~~~~d  266 (524)
T KOG0601|consen  194 FIQTELCG-ESLQSYCHTPC---NFLPDNLLWNSLRDWLSRDVTALSHLHSN---NIVHDDLKPANIFTTSDWTSCKLTD  266 (524)
T ss_pred             eeeecccc-chhHHhhhccc---ccCCchhhhhHHhhhhhcccccccccCCC---cccccccchhheecccccceeecCC
Confidence            99999994 78888877532   23566667777777778    99999987   89999999999999988 7899999


Q ss_pred             ecCCccccCCCcceee------cccceEEeccccc
Q 005587          658 CGLAPLISSGSVSQVS------HNLTIMRAGGVTH  686 (689)
Q Consensus       658 FGla~~~~~~~~~~~~------~~~~~~~apE~~~  686 (689)
                      ||+...+.++......      .+...|++||++.
T Consensus       267 f~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~  301 (524)
T KOG0601|consen  267 FGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLN  301 (524)
T ss_pred             cceeEEccCCccccceeeeecCCCCceEeChhhhc
Confidence            9999999887744322      4667899999984

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=7.9e-10  Score=115.17  Aligned_cols=178  Identities=21%  Similarity=0.215  Sum_probs=116.1

Q ss_pred             EEeeCCCeEEEEecCCCCCccc--CccccCCCCCCEEEccCCcCCCCCCCccc---cccccccccCccCCCC-CCcccCC
Q 005587           74 VQCNASDIIAIILNGANLGGEL--GENLGAFSSIRVIDLSNNHIGGSIPSILP---VTMQNFFLSDNQFSGS-IPSSLAT  147 (689)
Q Consensus        74 v~C~~~~l~~L~L~~n~l~g~~--p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~---~~L~~L~Ls~N~l~~~-~p~~~~~  147 (689)
                      +.=...+++.|||+.|-+...-  -.....|++|+.|+|+.|+|.-.......   ..|+.|.|+.+.|+-. +-..+..
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~  220 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT  220 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence            3334567888888888776532  23456788888888888888744433332   6788888888887721 1123456


Q ss_pred             CCCccEEEccCCcCCCCCChhhcCCCCCCEEEccCCCCCCCCC--CCccCCcccceeecccccccccc--cc--c---CC
Q 005587          148 LTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELP--PSLENLSQLTTLHLQNNQLSGTL--DV--L---QD  218 (689)
Q Consensus       148 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p--~~~~~l~~L~~L~Ls~N~l~~~~--~~--~---~~  218 (689)
                      +++|+.|+|..|...+.--.....+..|+.|||++|++- ..+  ...+.|+.|+.|+++.+.+...-  +.  .   ..
T Consensus       221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~  299 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHT  299 (505)
T ss_pred             CCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcc
Confidence            788888888888643333334555678888999988886 344  45677888888888888887542  11  1   22


Q ss_pred             c-cccccccccccCCCCCc-----cccCCCCCccccCCcCC
Q 005587          219 L-PLRDLNIENNLFSGPIP-----EKMLQIPNFRKDGNPFN  253 (689)
Q Consensus       219 l-~L~~L~Ls~N~l~g~ip-----~~l~~l~~l~~~~N~~~  253 (689)
                      . .|++|+++.|++. ..+     ..+.++..|.+..|+++
T Consensus       300 f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  300 FPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             cccceeeecccCccc-cccccchhhccchhhhhhccccccc
Confidence            2 2888999999886 222     12334555555666655

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.75  E-value=4.5e-09  Score=82.36  Aligned_cols=60  Identities=40%  Similarity=0.571  Sum_probs=51.4

Q ss_pred             ccccccccCccCCCCCCcccCCCCCccEEEccCCcCCCCCChhhcCCCCCCEEEccCCCC
Q 005587          126 TMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNL  185 (689)
Q Consensus       126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l  185 (689)
                      +|+.|+|++|+|+...+..|..+++|++|+|++|.|+...|..|..+++|++|+|++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            567777777877766667889999999999999999977788899999999999999976

...

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=98.73  E-value=6.2e-08  Score=106.81  Aligned_cols=123  Identities=18%  Similarity=0.243  Sum_probs=100.5

Q ss_pred             EeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEeCCeEEEEEeccCCCCHHHHHhcCcccCCCC
Q 005587          529 QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNL  608 (689)
Q Consensus       529 ~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~~~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l  608 (689)
                      +..++.+|.|...+....  .......+.++.|+.+|||||+++++.++..+..|||+|-+.  -|..++++..      
T Consensus        33 ~k~~~~~vsVF~~~~~~~--~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTErV~--Pl~~~lk~l~------  102 (690)
T KOG1243|consen   33 RKADGGPVSVFVYKRSNG--EVTELAKRAVKRLKTLRHPNILSYLDTTEEEGTLYLVTERVR--PLETVLKELG------  102 (690)
T ss_pred             eeccCCceEEEEEeCCCc--hhhHHHHHHHHHhhhccCchhhhhhhhhcccCceEEEeeccc--cHHHHHHHhH------
Confidence            455788888888765432  223446677889999999999999999999999999999885  5777776532      


Q ss_pred             CHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccc
Q 005587          609 SWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI  664 (689)
Q Consensus       609 ~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~  664 (689)
                       .....-.+.||+.||.|||..|  +++|++|.-+.|++++.|+.||.+|-++...
T Consensus       103 -~~~v~~Gl~qIl~AL~FL~~d~--~lvHgNv~~~SVfVn~~GeWkLggle~v~~~  155 (690)
T KOG1243|consen  103 -KEEVCLGLFQILAALSFLNDDC--NLVHGNVCKDSVFVNESGEWKLGGLELVSKA  155 (690)
T ss_pred             -HHHHHHHHHHHHHHHHHHhccC--CeeeccEeeeeEEEcCCCcEEEeeeEEEecc
Confidence             3455667889999999999875  8999999999999999999999999887544

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=98.67  E-value=3.6e-09  Score=113.36  Aligned_cols=99  Identities=20%  Similarity=0.293  Sum_probs=85.3

Q ss_pred             eEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecC
Q 005587          581 QRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGL  660 (689)
Q Consensus       581 ~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGl  660 (689)
                      +.|+.|++|.-.+|.++|...+. ...-+|.....++.|++.|++|   .   +.+|||+||.||++..+..+||.|||+
T Consensus       330 ~lyI~Mn~c~~~tledWl~rr~~-~e~~s~s~~~~~~~q~~~~~~y---k---~~ihrdlkp~nif~~~d~q~kIgDFgl  402 (516)
T KOG1033|consen  330 YLYIQMNLCEKETLEDWLRRRRT-GEERSLSLMLDIFKQIAPAVEY---K---GLIHRDLKPSNIFFSDDDQLKIGDFGL  402 (516)
T ss_pred             chhhhhhhhhhhhHHHHhhCCCc-ccccchhHHHHHHHhhccchhh---c---cchhhhccccccccccchhhhhhhhhh
Confidence            57899999999999999975432 3456788899999999999999   3   789999999999999999999999999


Q ss_pred             CccccCCC-------cceeecccceEEeccccc
Q 005587          661 APLISSGS-------VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       661 a~~~~~~~-------~~~~~~~~~~~~apE~~~  686 (689)
                      .......+       ......++..||+||-++
T Consensus       403 ~ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~  435 (516)
T KOG1033|consen  403 VTSQDKDETVAPAAASHTQQVGTLLYMSPEQIR  435 (516)
T ss_pred             eeecccCCcccchhhhhhhcccccccCCHHHHh
Confidence            98887766       445567888999999886

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.67  E-value=1.1e-08  Score=111.66  Aligned_cols=153  Identities=21%  Similarity=0.219  Sum_probs=120.1

Q ss_pred             HhhhccCCCccceEeecCCeEEEEEEe--CCCcEEEEEEeccccCChhhHHHHHHHHHHHhcC-CCCCcceecEEEEeCC
Q 005587          504 LQQYTNSFSQENLIGAGMLGSVYRAQL--PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHANIVELKGYCAEHG  580 (689)
Q Consensus       504 l~~~~~~f~~~~~iG~G~~G~Vy~~~~--~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l-~HpnIv~l~~~~~~~~  580 (689)
                      ......+|.....||.|.|+.||....  .++..|++|.+.........+..-..|+-+...+ -|.+++.....|....
T Consensus       260 ~s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r  339 (524)
T KOG0601|consen  260 TSCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLR  339 (524)
T ss_pred             ceeecCCcceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCCccccc
Confidence            344556888899999999999999854  4678999998765543333333334455444444 5889999888888777


Q ss_pred             eEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCC-CcEEEEeec
Q 005587          581 QRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDD-LAVSVSDCG  659 (689)
Q Consensus       581 ~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~-~~~kl~DFG  659 (689)
                      ..|+--|||+++++...+..    ...++...++++..|++.++.++|+.   .++|+|+||+||++..+ +..++.|||
T Consensus       340 ~~~ip~e~~~~~s~~l~~~~----~~~~d~~~~~~~~~q~~~~l~~i~s~---~~~~~d~~psni~i~~~~~~~~~~~~~  412 (524)
T KOG0601|consen  340 QGYIPLEFCEGGSSSLRSVT----SQMLDEDPRLRLTAQILTALNVIHSK---LFVHLDVKPSNILISNDGFFSKLGDFG  412 (524)
T ss_pred             cccCchhhhcCcchhhhhHH----HHhcCcchhhhhHHHHHhccccccch---hhhcccccccceeeccchhhhhccccc
Confidence            88899999999998776532    34567788899999999999999976   89999999999999886 788999999


Q ss_pred             CCcc
Q 005587          660 LAPL  663 (689)
Q Consensus       660 la~~  663 (689)
                      .++.
T Consensus       413 ~~t~  416 (524)
T KOG0601|consen  413 CWTR  416 (524)
T ss_pred             cccc
Confidence            9875

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.61  E-value=2.5e-09  Score=117.27  Aligned_cols=125  Identities=26%  Similarity=0.357  Sum_probs=73.1

Q ss_pred             cccccccccCccCCCCCCcccCCCCCccEEEccCCcCCCCCChhhcCCCCCCEEEccCCCCCCCCCCC-ccCCcccceee
Q 005587          125 VTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPS-LENLSQLTTLH  203 (689)
Q Consensus       125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~-~~~l~~L~~L~  203 (689)
                      ..|...+.++|+|. .+..++.-++.|+.|||++|+++..-  .+..|+.|++|||+.|.|. .+|.. ...+ .|+.|.
T Consensus       164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~  238 (1096)
T KOG1859|consen  164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLN  238 (1096)
T ss_pred             hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeee
Confidence            34556666777766 55556666667777777777776332  5666777777777777776 44432 2223 367777


Q ss_pred             cccccccccccccCCcc-ccccccccccCCCCC---c-cccCCCCCccccCCcCCCC
Q 005587          204 LQNNQLSGTLDVLQDLP-LRDLNIENNLFSGPI---P-EKMLQIPNFRKDGNPFNST  255 (689)
Q Consensus       204 Ls~N~l~~~~~~~~~l~-L~~L~Ls~N~l~g~i---p-~~l~~l~~l~~~~N~~~~~  255 (689)
                      |++|.++..... .++. |..|||++|-|++.-   | ..+..|..|.+.|||+.|.
T Consensus       239 lrnN~l~tL~gi-e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  239 LRNNALTTLRGI-ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             ecccHHHhhhhH-HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            777766644322 2222 666777777665421   1 1234455566677776654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.59  E-value=1.4e-08  Score=111.79  Aligned_cols=170  Identities=24%  Similarity=0.241  Sum_probs=106.2

Q ss_pred             CCCeEEEEecCCCCCcccCccccCCCCCCEEEccCCcCCCCCCCccccccccccccCccCCCCCCcccCCCCCccEEEcc
Q 005587           78 ASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLN  157 (689)
Q Consensus        78 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  157 (689)
                      ..++..|+|.+|.|.+... .+..+++|++|+|++|+|+...+-.....|+.|++++|.|+..  ..+..+.+|+.++++
T Consensus        94 ~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~  170 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLS  170 (414)
T ss_pred             ccceeeeeccccchhhccc-chhhhhcchheeccccccccccchhhccchhhheeccCcchhc--cCCccchhhhcccCC
Confidence            3567777777777775332 2666777777777777777555444445577777777777732  345557777777777


Q ss_pred             CCcCCCCCChh-hcCCCCCCEEEccCCCCCCCCCCCccCCcccceeecccccccccccccCCc--cccccccccccCCCC
Q 005587          158 NNLLSGEIPDA-FQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDL--PLRDLNIENNLFSGP  234 (689)
Q Consensus       158 ~N~l~g~~p~~-~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l--~L~~L~Ls~N~l~g~  234 (689)
                      +|++...-+ . ...+.+|+.+++.+|.+.  ....+..+..+..+++..|.++..-+.....  .|+.+++++|.+.-.
T Consensus       171 ~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~--~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~  247 (414)
T KOG0531|consen  171 YNRIVDIEN-DELSELISLEELDLGGNSIR--EIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRS  247 (414)
T ss_pred             cchhhhhhh-hhhhhccchHHHhccCCchh--cccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccc
Confidence            777773333 2 466677777777777775  2344555556666677777766433322222  267888888888732


Q ss_pred             --CccccCCCCCccccCCcCC
Q 005587          235 --IPEKMLQIPNFRKDGNPFN  253 (689)
Q Consensus       235 --ip~~l~~l~~l~~~~N~~~  253 (689)
                        ....+.+++.|++.+|...
T Consensus       248 ~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  248 PEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             cccccccccccccchhhcccc
Confidence              2344556666676666554

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=98.58  E-value=4e-07  Score=90.82  Aligned_cols=141  Identities=21%  Similarity=0.171  Sum_probs=96.4

Q ss_pred             CCccceEeecCCeEEEEEEeCCCcEEEEEEeccccCC--------------------hhhHHHHHHHHHHHhcCCCC--C
Q 005587          511 FSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASS--------------------QQKDDEFLELVNNIDRIRHA--N  568 (689)
Q Consensus       511 f~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~--------------------~~~~~~~~~e~~~l~~l~Hp--n  568 (689)
                      ..++..||.|.=+.||.|....|.++|||.=+....+                    ........+|.+.|.+|.-.  .
T Consensus        93 e~iG~~IGvGKEsdVY~~~~~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~~  172 (304)
T COG0478          93 EAIGTKIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGVK  172 (304)
T ss_pred             HhhccccccCccceEEEEECCCCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCCC
Confidence            4567899999999999999999999999964322110                    01123456788888888654  5


Q ss_pred             cceecEEEEeCCeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEec
Q 005587          569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLD  648 (689)
Q Consensus       569 Iv~l~~~~~~~~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~  648 (689)
                      |.+.+++    +...+||||++|-.|...=         ++-...-.+...|++-+.-+-..   ||||+|+.+=||+++
T Consensus       173 VP~P~~~----nRHaVvMe~ieG~eL~~~r---------~~~en~~~il~~il~~~~~~~~~---GiVHGDlSefNIlV~  236 (304)
T COG0478         173 VPKPIAW----NRHAVVMEYIEGVELYRLR---------LDVENPDEILDKILEEVRKAYRR---GIVHGDLSEFNILVT  236 (304)
T ss_pred             CCCcccc----ccceeeeehcccceeeccc---------CcccCHHHHHHHHHHHHHHHHHc---CccccCCchheEEEe
Confidence            6666554    5668999999997665321         11112223333333433333343   899999999999999


Q ss_pred             CCCcEEEEeecCCccccCC
Q 005587          649 DDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       649 ~~~~~kl~DFGla~~~~~~  667 (689)
                      ++|.+.++||--+......
T Consensus       237 ~dg~~~vIDwPQ~v~~~hp  255 (304)
T COG0478         237 EDGDIVVIDWPQAVPISHP  255 (304)
T ss_pred             cCCCEEEEeCcccccCCCC
Confidence            9999999999776654433

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=98.55  E-value=2.1e-07  Score=103.34  Aligned_cols=150  Identities=20%  Similarity=0.260  Sum_probs=94.9

Q ss_pred             cCCCccceEeecCCeEEEEEEeCCCcEEEEEEeccccCCh----------------------------hh----------
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQ----------------------------QK----------  550 (689)
Q Consensus       509 ~~f~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~----------------------------~~----------  550 (689)
                      .+|+. +.|+.++-|+||+|++++|+.||||+.+..-...                            ..          
T Consensus       126 ~eF~~-~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~  204 (517)
T COG0661         126 SEFEP-EPIASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLRE  204 (517)
T ss_pred             HHcCC-CchhhhhHhhheeEEecCCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHH
Confidence            34442 6799999999999999999999999875431100                            00          


Q ss_pred             HHHHHHHHHHHhcC-----CCCCcceecEEEEeCCeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHH-
Q 005587          551 DDEFLELVNNIDRI-----RHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARAL-  624 (689)
Q Consensus       551 ~~~~~~e~~~l~~l-----~HpnIv~l~~~~~~~~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL-  624 (689)
                      +-++.+|...+.++     ..++|.--.=|++-.+...|+|||++|-.+.++..-.   ...++   +..++..++++. 
T Consensus       205 ElDy~~EA~n~~~~~~nf~~~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l~---~~g~d---~k~ia~~~~~~f~  278 (517)
T COG0661         205 ELDYRREAANAERFRENFKDDPDVYVPKVYWEYTTRRVLTMEWIDGIKISDIAALK---SAGID---RKELAELLVRAFL  278 (517)
T ss_pred             HhCHHHHHHHHHHHHHHcCCCCCeEeceeehhccCCcEEEEEeeCCEecccHHHHH---hcCCC---HHHHHHHHHHHHH
Confidence            01233444444433     2344332222334456778999999999888874221   12233   223333333321 


Q ss_pred             HHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCccccCCC
Q 005587          625 EYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       625 ~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  668 (689)
                      ..+-.   .+++|.|..|.||+++.+|.+.+.|||+...+.+..
T Consensus       279 ~q~~~---dgffHaDpHpGNi~v~~~g~i~~lDfGi~g~l~~~~  319 (517)
T COG0661         279 RQLLR---DGFFHADPHPGNILVRSDGRIVLLDFGIVGRLDPKF  319 (517)
T ss_pred             HHHHh---cCccccCCCccceEEecCCcEEEEcCcceecCCHHH
Confidence            11111   279999999999999999999999999998876543

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.47  E-value=1.3e-06  Score=86.65  Aligned_cols=108  Identities=24%  Similarity=0.284  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHhcCCCCC--cceecEEEEeCC----eEEEEEeccCCC-CHHHHHhcCcccCCCCCHHHHHHHHHHHHHH
Q 005587          551 DDEFLELVNNIDRIRHAN--IVELKGYCAEHG----QRLLIYEYCSNG-TLQDMLHSDDELKNNLSWNTRIRMALGAARA  623 (689)
Q Consensus       551 ~~~~~~e~~~l~~l~Hpn--Iv~l~~~~~~~~----~~~lV~Ey~~gg-sL~~~l~~~~~~~~~l~~~~~~~i~~qia~a  623 (689)
                      .....+|.+.+..+..-.  +...+++.+...    ..+||+|++++- +|.+++....    ..+......++.++++.
T Consensus        55 ~~ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~----~~~~~~~~~ll~~l~~~  130 (206)
T PF06293_consen   55 RSRAKREWRNLQRLREAGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQWE----QLDPSQRRELLRALARL  130 (206)
T ss_pred             chHHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhhc----ccchhhHHHHHHHHHHH
Confidence            345667777776665333  445666666532    458999999984 7999887522    14455677889999999


Q ss_pred             HHHHHhCCCCCcEEecccCCCeEecCCC---cEEEEeecCCcccc
Q 005587          624 LEYLHEICQPPIVHRNFKSANILLDDDL---AVSVSDCGLAPLIS  665 (689)
Q Consensus       624 L~yLH~~~~~~iiHrDlKp~NILl~~~~---~~kl~DFGla~~~~  665 (689)
                      +.-||..   +|+|+|+++.|||++.+.   .+.++||+-++...
T Consensus       131 i~~lH~~---gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~~~  172 (206)
T PF06293_consen  131 IAKLHDA---GIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRFRP  172 (206)
T ss_pred             HHHHHHC---cCCCCCCCcccEEEeCCCCceeEEEEcchhceeCC
Confidence            9999998   899999999999999876   89999999888754

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=98.42  E-value=1.6e-06  Score=92.90  Aligned_cols=143  Identities=17%  Similarity=0.301  Sum_probs=111.1

Q ss_pred             CCeEEEEEE-eCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCCcceecEEEEe----CCeEEEEEeccCC-CCH
Q 005587          521 MLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAE----HGQRLLIYEYCSN-GTL  594 (689)
Q Consensus       521 ~~G~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~HpnIv~l~~~~~~----~~~~~lV~Ey~~g-gsL  594 (689)
                      .-.+.|++. ..||..|++|++......  ........++.++++.|+|||++.+.+..    +..+.+||+|.++ ++|
T Consensus       288 ~~~Ttyk~~s~~DG~~YvLkRlhg~r~~--~~nk~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~TL  365 (655)
T KOG3741|consen  288 FSITTYKATSNVDGNAYVLKRLHGDRDQ--STNKDTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPTL  365 (655)
T ss_pred             ccceeEeeeeccCCceeeeeeecccccc--CcccchHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCCCchH
Confidence            345789994 568999999999433211  11122345778899999999999998873    4568899999986 578


Q ss_pred             HHHHhcCcc-----------cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCcEEEEeecCCcc
Q 005587          595 QDMLHSDDE-----------LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPL  663 (689)
Q Consensus       595 ~~~l~~~~~-----------~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~  663 (689)
                      .++......           .....++...+.|+.|+..||.++|+.   |..-+-|.+.+||++.+.+++|+..|+...
T Consensus       366 ~d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHss---GLAck~L~~~kIlv~G~~RIriS~C~i~Dv  442 (655)
T KOG3741|consen  366 YDLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHSS---GLACKTLDLKKILVTGKMRIRISGCGIMDV  442 (655)
T ss_pred             HHHHccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHhc---CceeecccHhHeEeeCcceEEEecccceee
Confidence            876543221           123577889999999999999999997   788899999999999999999999999888


Q ss_pred             ccCCC
Q 005587          664 ISSGS  668 (689)
Q Consensus       664 ~~~~~  668 (689)
                      +.++.
T Consensus       443 l~~d~  447 (655)
T KOG3741|consen  443 LQEDP  447 (655)
T ss_pred             ecCCC
Confidence            87665

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.39  E-value=4.3e-08  Score=107.94  Aligned_cols=168  Identities=26%  Similarity=0.286  Sum_probs=108.3

Q ss_pred             CeEEEEecCCCCCcccCccccCCCCCCEEEccCCcCCCCCC-CccccccccccccCccCCCCCCcccCCCCCccEEEccC
Q 005587           80 DIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIP-SILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNN  158 (689)
Q Consensus        80 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  158 (689)
                      .+..+.|..|.+.. +-..+..+.+|+.|+|.+|+|..... .....+|+.|+|++|+|+...  .+..++.|+.|++++
T Consensus        73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSG  149 (414)
T ss_pred             hHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc--chhhccchhhheecc
Confidence            34445566666664 33447778888888888888885544 333378888888888887543  366677788888888


Q ss_pred             CcCCCCCChhhcCCCCCCEEEccCCCCCCCCCCC-ccCCcccceeecccccccccccccCCccccccccccccCCCCCcc
Q 005587          159 NLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPS-LENLSQLTTLHLQNNQLSGTLDVLQDLPLRDLNIENNLFSGPIPE  237 (689)
Q Consensus       159 N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~L~~L~Ls~N~l~g~ip~  237 (689)
                      |.|+ .+. .+..+..|+.+++++|.+.. +... ...+.+|+.+++.+|.+...-..-....+..+++..|.++-.-+-
T Consensus       150 N~i~-~~~-~~~~l~~L~~l~l~~n~i~~-ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l  226 (414)
T KOG0531|consen  150 NLIS-DIS-GLESLKSLKLLDLSYNRIVD-IENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGL  226 (414)
T ss_pred             Ccch-hcc-CCccchhhhcccCCcchhhh-hhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCc
Confidence            8887 332 45557788888888888873 3332 467778888888888776443222222245557778877633321


Q ss_pred             c-cC--CCCCccccCCcCC
Q 005587          238 K-ML--QIPNFRKDGNPFN  253 (689)
Q Consensus       238 ~-l~--~l~~l~~~~N~~~  253 (689)
                      . +.  .++.+++.+|+..
T Consensus       227 ~~~~~~~L~~l~l~~n~i~  245 (414)
T KOG0531|consen  227 NELVMLHLRELYLSGNRIS  245 (414)
T ss_pred             ccchhHHHHHHhcccCccc
Confidence            1 11  1566777777765

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=98.37  E-value=4.4e-06  Score=83.97  Aligned_cols=139  Identities=14%  Similarity=0.176  Sum_probs=84.9

Q ss_pred             ceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCCC--cceecEEEEeCCeEEEEEeccCCC
Q 005587          515 NLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN--IVELKGYCAEHGQRLLIYEYCSNG  592 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~Hpn--Iv~l~~~~~~~~~~~lV~Ey~~gg  592 (689)
                      ..||+|..+.||+.   .|..+++|......    ......+|.+++..+..-.  +.+.+++....+...+|||+++|.
T Consensus         7 ~~i~~G~t~~~y~~---~~~~~VlR~~~~~~----~~~~i~~E~~~l~~l~~~glpvP~~~~~~~~~~~~glv~e~i~G~   79 (226)
T TIGR02172         7 TQTGEGGNGESYTH---KTGKWMLKLYNPGF----DKETIKREFDASRKVFSLGIPTPHPFDLVEDGGRLGLIYELIVGK   79 (226)
T ss_pred             eeecCCCCcceeEe---cCCCEEEEeCCCCC----CHHHHHHHHHHHHHHHHcCCCCCceEEEEecCCeeeeeeeecCCc
Confidence            57899999999984   24567888875432    2334578888888776443  456777777777888999999986


Q ss_pred             C-HHHHH---------------------hcCcccCCCCCHHHHH-HHHH----------HHHH-HHHHHHhCC-CCCcEE
Q 005587          593 T-LQDML---------------------HSDDELKNNLSWNTRI-RMAL----------GAAR-ALEYLHEIC-QPPIVH  637 (689)
Q Consensus       593 s-L~~~l---------------------~~~~~~~~~l~~~~~~-~i~~----------qia~-aL~yLH~~~-~~~iiH  637 (689)
                      + +...+                     |....  ......... ++..          .+.+ ...+|.... ...++|
T Consensus        80 ~~~~~~~~~~~~~~~~l~~~la~~l~~lH~~~~--~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~H  157 (226)
T TIGR02172        80 RSFSRIISDNPSRLEEIAKIFAEMAKKLHSTKC--DTSTFQSYKEKIRKFIEEKDFVPKDYKEKARAFIKEVPDTSTCLH  157 (226)
T ss_pred             cchhhhhcCCHHHHHHHHHHHHHHHHHHhCCCC--CCCcHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhCCCCCceEe
Confidence            3 22111                     11000  011111100 0000          0111 122332221 235789


Q ss_pred             ecccCCCeEecCCCcEEEEeecCCcc
Q 005587          638 RNFKSANILLDDDLAVSVSDCGLAPL  663 (689)
Q Consensus       638 rDlKp~NILl~~~~~~kl~DFGla~~  663 (689)
                      +|+.|.||++++++ +.|+||+.+..
T Consensus       158 gD~~~~Nii~~~~~-~~iIDwe~a~~  182 (226)
T TIGR02172       158 GDFQIGNLITSGKG-TYWIDLGDFGY  182 (226)
T ss_pred             cCCCCCcEEEcCCC-cEEEechhcCc
Confidence            99999999999888 99999998874

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.37  E-value=4.6e-07  Score=65.31  Aligned_cols=38  Identities=42%  Similarity=0.941  Sum_probs=28.7

Q ss_pred             HhhHHHHHHHHHHhCC-C--CCCCCCCCC-CCCCCCCCccEEee
Q 005587           38 PNDVAAINSLYAALGS-P--VLPGWVASA-GDPCGESWQGVQCN   77 (689)
Q Consensus        38 ~~d~~aL~~~~~~l~~-~--~l~~W~~~~-~~~C~~~w~gv~C~   77 (689)
                      ++|++||+.||+++.+ +  .+.+|+.+. .+||  +|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C--~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPC--SWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CC--CSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCe--eeccEEeC
Confidence            5799999999999984 4  789999754 7888  89999996

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.31  E-value=4.3e-07  Score=91.88  Aligned_cols=96  Identities=25%  Similarity=0.494  Sum_probs=83.0

Q ss_pred             HHHhcCCCCCcceecEEEEeC-----CeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCC
Q 005587          559 NNIDRIRHANIVELKGYCAEH-----GQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQP  633 (689)
Q Consensus       559 ~~l~~l~HpnIv~l~~~~~~~-----~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~  633 (689)
                      ..|-.+.|.|||+++.|+.+.     .+..++.|||+.|++.++|++.......+....-.+|.-||+.||.|||+. .+
T Consensus       119 dnllqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs~-~P  197 (458)
T KOG1266|consen  119 DNLLQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHSC-DP  197 (458)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhcc-CC
Confidence            345566799999999998654     357899999999999999998766666777778889999999999999986 78


Q ss_pred             CcEEecccCCCeEecCCCcEEE
Q 005587          634 PIVHRNFKSANILLDDDLAVSV  655 (689)
Q Consensus       634 ~iiHrDlKp~NILl~~~~~~kl  655 (689)
                      +|+|+++.-+-|++..+|-+||
T Consensus       198 piihgnlTc~tifiq~ngLIki  219 (458)
T KOG1266|consen  198 PIIHGNLTCDTIFIQHNGLIKI  219 (458)
T ss_pred             ccccCCcchhheeecCCceEEe
Confidence            9999999999999999998886

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.31  E-value=2.1e-08  Score=110.30  Aligned_cols=122  Identities=29%  Similarity=0.356  Sum_probs=96.8

Q ss_pred             CCCEEEccCCcCCCCCCCccc--cccccccccCccCCCCCCcccCCCCCccEEEccCCcCCCCCCh-hhcCCCCCCEEEc
Q 005587          104 SIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPD-AFQSLTGLINLDL  180 (689)
Q Consensus       104 ~L~~L~Ls~N~l~~~~p~~~~--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~-~~~~l~~L~~L~L  180 (689)
                      .|...+.++|.|. .....+.  +.|+.|+|++|+++..-  .+..|+.|++|||++|.|+ .+|. ....+. |+.|.|
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence            4677888899887 4444444  78999999999999543  7899999999999999998 6664 223343 999999


Q ss_pred             cCCCCCCCCCCCccCCcccceeeccccccccccc--ccCCcc-ccccccccccCC
Q 005587          181 SSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLD--VLQDLP-LRDLNIENNLFS  232 (689)
Q Consensus       181 s~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~l~-L~~L~Ls~N~l~  232 (689)
                      ++|.++. + ..+.+|.+|+.|||++|-|++.-.  .+..+. |..|+|.+|.+.
T Consensus       240 rnN~l~t-L-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  240 RNNALTT-L-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cccHHHh-h-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            9999984 3 468899999999999999987542  233343 999999999987

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.31  E-value=2.7e-08  Score=88.39  Aligned_cols=101  Identities=25%  Similarity=0.306  Sum_probs=43.7

Q ss_pred             eEEEEecCCCCCcccCc---cccCCCCCCEEEccCCcCCCCCCCccc---cccccccccCccCCCCCCcccCCCCCccEE
Q 005587           81 IIAIILNGANLGGELGE---NLGAFSSIRVIDLSNNHIGGSIPSILP---VTMQNFFLSDNQFSGSIPSSLATLTLLTDM  154 (689)
Q Consensus        81 l~~L~L~~n~l~g~~p~---~l~~l~~L~~L~Ls~N~l~~~~p~~~~---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  154 (689)
                      +..++|+++.|. .++.   .+.....|+..+|++|.|.. +|..|.   +.++.|+|++|.|+ .+|.++..++.|+.|
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            344555555543 2222   23333444455555555552 222222   23444444444444 344444444444444


Q ss_pred             EccCCcCCCCCChhhcCCCCCCEEEccCCCC
Q 005587          155 SLNNNLLSGEIPDAFQSLTGLINLDLSSNNL  185 (689)
Q Consensus       155 ~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l  185 (689)
                      +++.|.|. ..|..|..|.+|-.||..+|.+
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~  135 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENAR  135 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHHHhcCCCCcc
Confidence            44444444 3344444444444444444444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.31  E-value=2.5e-08  Score=88.60  Aligned_cols=132  Identities=22%  Similarity=0.310  Sum_probs=100.1

Q ss_pred             CCCEEEccCCcCCCCCCCccc-----cccccccccCccCCCCCCcccC-CCCCccEEEccCCcCCCCCChhhcCCCCCCE
Q 005587          104 SIRVIDLSNNHIGGSIPSILP-----VTMQNFFLSDNQFSGSIPSSLA-TLTLLTDMSLNNNLLSGEIPDAFQSLTGLIN  177 (689)
Q Consensus       104 ~L~~L~Ls~N~l~~~~p~~~~-----~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~  177 (689)
                      .+..|||+++.|. .+++...     ..|+.++|++|.|. .+|..|. ..+.++.|+|++|+|+ .+|.++..++.|+.
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS  104 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence            4567888888775 3443332     56788899999999 5565554 4558999999999999 88999999999999


Q ss_pred             EEccCCCCCCCCCCCccCCcccceeecccccccccccccCCcc-ccccccccccCCCCCcccc
Q 005587          178 LDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP-LRDLNIENNLFSGPIPEKM  239 (689)
Q Consensus       178 L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~-L~~L~Ls~N~l~g~ip~~l  239 (689)
                      |+++.|.|. ..|..+..|.+|..|+..+|.+..++-.+...+ ....++.+|.+.+.-+..+
T Consensus       105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~~~~~kl  166 (177)
T KOG4579|consen  105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGDETKKKL  166 (177)
T ss_pred             cccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCcccccCcccc
Confidence            999999998 678888889999999999999876653222222 3445667888877665443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=2.1e-07  Score=97.36  Aligned_cols=155  Identities=20%  Similarity=0.259  Sum_probs=114.1

Q ss_pred             CCCeEEEEecCCCCCcccCcc-ccCCCCCCEEEccCCcCCCCCCCcc---ccccccccccCccCCCCCCcccCCCCCccE
Q 005587           78 ASDIIAIILNGANLGGELGEN-LGAFSSIRVIDLSNNHIGGSIPSIL---PVTMQNFFLSDNQFSGSIPSSLATLTLLTD  153 (689)
Q Consensus        78 ~~~l~~L~L~~n~l~g~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~~---~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  153 (689)
                      ..+++.|+|+.|.+.-..... -..+++|+.|.|+.+.|+..--..+   .++|+.|+|..|...+.-.....-+..|+.
T Consensus       171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~  250 (505)
T KOG3207|consen  171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE  250 (505)
T ss_pred             cccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence            478999999999987544332 3367899999999999983211111   178999999999644344445566788999


Q ss_pred             EEccCCcCCCCCC--hhhcCCCCCCEEEccCCCCCCC-CCCC-----ccCCcccceeecccccccccc--cccCCcc-cc
Q 005587          154 MSLNNNLLSGEIP--DAFQSLTGLINLDLSSNNLSGE-LPPS-----LENLSQLTTLHLQNNQLSGTL--DVLQDLP-LR  222 (689)
Q Consensus       154 L~Ls~N~l~g~~p--~~~~~l~~L~~L~Ls~N~l~g~-~p~~-----~~~l~~L~~L~Ls~N~l~~~~--~~~~~l~-L~  222 (689)
                      |||++|++- ..+  ...+.++.|..|+++.+.+... .|+.     ...+++|++|+++.|++....  ..+..+. |+
T Consensus       251 LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk  329 (505)
T KOG3207|consen  251 LDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLK  329 (505)
T ss_pred             ccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhh
Confidence            999999997 444  4678899999999999998752 3433     356789999999999996433  3444444 88


Q ss_pred             ccccccccCCC
Q 005587          223 DLNIENNLFSG  233 (689)
Q Consensus       223 ~L~Ls~N~l~g  233 (689)
                      .|....|.|+.
T Consensus       330 ~l~~~~n~ln~  340 (505)
T KOG3207|consen  330 HLRITLNYLNK  340 (505)
T ss_pred             hhhcccccccc
Confidence            88888888874

>PRK09902 hypothetical protein; Provisional

Probab=98.23  E-value=1.6e-05  Score=77.69  Aligned_cols=140  Identities=16%  Similarity=0.127  Sum_probs=100.5

Q ss_pred             eecCCeEEEEEEeCCCcEEEEEEeccc-cCC---hhhHHHHHHHHHHHhcCCCCC--cceecEEEE-eC----CeEEEEE
Q 005587          518 GAGMLGSVYRAQLPDGKLLAVKKLDKR-ASS---QQKDDEFLELVNNIDRIRHAN--IVELKGYCA-EH----GQRLLIY  586 (689)
Q Consensus       518 G~G~~G~Vy~~~~~~g~~vAvK~l~~~-~~~---~~~~~~~~~e~~~l~~l~Hpn--Iv~l~~~~~-~~----~~~~lV~  586 (689)
                      |+|+-+-||+-.+. |+.+=+|+-... ..+   +.....|.+|...|.++..-+  +.+.. ++. ..    -.-+||+
T Consensus        27 ~rgG~SgV~r~~~~-g~~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvPVP~pv-f~~~~k~~~~~rA~LVT  104 (216)
T PRK09902         27 RRNGMSGVQCVERN-GKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIV-FGEAVKIEGEWRALLVT  104 (216)
T ss_pred             CCCCcceEEEEEeC-CcEEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCCCCccc-eeeeeccCCceEEEEEE
Confidence            67888889988764 446888875411 111   235678999999988885433  44444 333 21    1357999


Q ss_pred             eccCC-CCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCc--EEEEeecCCcc
Q 005587          587 EYCSN-GTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLA--VSVSDCGLAPL  663 (689)
Q Consensus       587 Ey~~g-gsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~--~kl~DFGla~~  663 (689)
                      |-+.| -+|.+++....  ....+......+..++++.+.-||..   ++.|+|+-+.||+++.++.  ++++||--++.
T Consensus       105 e~L~g~~~L~~~l~~~~--~~~~~~~~k~~il~~va~~ia~LH~~---Gv~Hgdly~khIll~~~g~~~v~lIDlEk~r~  179 (216)
T PRK09902        105 EDMAGFISIADWYAQHA--VSPYSDEVRQAMLKAVALAFKKMHSV---NRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRR  179 (216)
T ss_pred             EeCCCCccHHHHHhcCC--cCCcchHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHhheeecCCCCeeEEEEEhhccch
Confidence            97754 58988886432  22456677788999999999999998   8999999999999986666  99999987664


Q ss_pred             c
Q 005587          664 I  664 (689)
Q Consensus       664 ~  664 (689)
                      .
T Consensus       180 ~  180 (216)
T PRK09902        180 R  180 (216)
T ss_pred             h
Confidence            3

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=98.19  E-value=4.6e-06  Score=92.45  Aligned_cols=142  Identities=23%  Similarity=0.256  Sum_probs=89.8

Q ss_pred             ceEeecCCeEEEEEEeCCCcEEEEEEeccccCCh--h---------------------------------hHHHHHHHHH
Q 005587          515 NLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQ--Q---------------------------------KDDEFLELVN  559 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~--~---------------------------------~~~~~~~e~~  559 (689)
                      +.||.-+.|+||+|++++|+.||||+-+..-...  .                                 .+-+|.+|.+
T Consensus       167 ~piaaASlaQVhrA~L~~G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELDF~~EA~  246 (538)
T KOG1235|consen  167 EPIAAASLAQVHRARLKNGEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSLPQELDFTKEAK  246 (538)
T ss_pred             chhhhcchhheEEEEecCCCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhhHhhcchHHHHH
Confidence            6789999999999999999999999864321100  0                                 0012334443


Q ss_pred             HHh----cCCCCC------cceecEEEEeCCeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHh
Q 005587          560 NID----RIRHAN------IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE  629 (689)
Q Consensus       560 ~l~----~l~Hpn------Iv~l~~~~~~~~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~  629 (689)
                      ...    .++|-+      |.+++-.  -.....|+||||+|..+.|+-.-.   ...++...+..-+.++..-+-+.| 
T Consensus       247 Nae~~~~~f~~~~~~~~V~VP~Vy~~--~st~RVLtME~~~G~~i~Dl~~i~---~~gi~~~~i~~~l~~~~~~qIf~~-  320 (538)
T KOG1235|consen  247 NAERFRENFKDFSLLTYVLVPKVYWD--LSTKRVLTMEYVDGIKINDLDAID---KRGISPHDILNKLVEAYLEQIFKT-  320 (538)
T ss_pred             hHHHHHHHHHhcccccceeCCeehhh--cCcceEEEEEecCCccCCCHHHHH---HcCCCHHHHHHHHHHHHHHHHHhc-
Confidence            322    233444      3343322  234678999999998776653211   223554444443333322222223 


Q ss_pred             CCCCCcEEecccCCCeEecC----CCcEEEEeecCCccccC
Q 005587          630 ICQPPIVHRNFKSANILLDD----DLAVSVSDCGLAPLISS  666 (689)
Q Consensus       630 ~~~~~iiHrDlKp~NILl~~----~~~~kl~DFGla~~~~~  666 (689)
                          |++|.|=.|.||++..    ++++.+-|||+.+.+..
T Consensus       321 ----GffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~is~  357 (538)
T KOG1235|consen  321 ----GFFHADPHPGNILVRPNPEGDEEIVLLDHGLYAVISH  357 (538)
T ss_pred             ----CCccCCCCCCcEEEecCCCCCccEEEEcccccccccH
Confidence                7999999999999983    67899999999987654

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=98.14  E-value=3.2e-05  Score=75.90  Aligned_cols=140  Identities=19%  Similarity=0.242  Sum_probs=88.3

Q ss_pred             ccCCCccceEeecCCeEEEEEEeCCCcEEEEEEeccccCChh-hHH------HHHHHHHHHhcCCCC---CcceecEEEE
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQ-KDD------EFLELVNNIDRIRHA---NIVELKGYCA  577 (689)
Q Consensus       508 ~~~f~~~~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~-~~~------~~~~e~~~l~~l~Hp---nIv~l~~~~~  577 (689)
                      ..+|...+++-......|.+-+. +|+.+++|..+....-.+ ...      ...+++..+.+++..   ....++-..+
T Consensus        30 ~~~~~~~kv~k~~~r~~ValIei-~~~kyIlK~pr~~~~r~er~~~sf~kg~~~~~l~~~~~~i~~~g~~~~~~~yl~~e  108 (229)
T PF06176_consen   30 DNNYKIIKVFKNTKRNYVALIEI-DGKKYILKEPREENRRPERRFKSFFKGSEYSRLINNTDKIRNEGFTEPADPYLAAE  108 (229)
T ss_pred             hCCceEEEeecCCCccEEEEEEE-CCcEEEEeccchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHcCccccccceeeee
Confidence            35677777777777666666655 578899998754321111 111      122334434443322   2222222222


Q ss_pred             -----eCCeEEEEEeccCCCCHHHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEecccCCCeEecCCCc
Q 005587          578 -----EHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLA  652 (689)
Q Consensus       578 -----~~~~~~lV~Ey~~ggsL~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~~~~iiHrDlKp~NILl~~~~~  652 (689)
                           -....++||||++|..|.++..        ++.    .++..+.+++.-+|..   |++|+|..|.|+++++++ 
T Consensus       109 kk~~~~~~~~~ll~EYIeG~~l~d~~~--------i~e----~~~~ki~~~ikqlH~~---G~~HGD~hpgNFlv~~~~-  172 (229)
T PF06176_consen  109 KKIFRYTSSYVLLMEYIEGVELNDIED--------IDE----DLAEKIVEAIKQLHKH---GFYHGDPHPGNFLVSNNG-  172 (229)
T ss_pred             eeeccceeEEEEEEEEecCeecccchh--------cCH----HHHHHHHHHHHHHHHc---CCccCCCCcCcEEEECCc-
Confidence                 2245579999999988866532        221    2445667789999988   899999999999999665 


Q ss_pred             EEEEeecCCccc
Q 005587          653 VSVSDCGLAPLI  664 (689)
Q Consensus       653 ~kl~DFGla~~~  664 (689)
                      ++++||+..+..
T Consensus       173 i~iID~~~k~~~  184 (229)
T PF06176_consen  173 IRIIDTQGKRMS  184 (229)
T ss_pred             EEEEECcccccc
Confidence            899999877643

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.12  E-value=8.7e-07  Score=90.56  Aligned_cols=131  Identities=25%  Similarity=0.373  Sum_probs=61.9

Q ss_pred             CCCCCEEEccCCcCCCCCCCccc------cccccccccCccCCCCC-------------CcccCCCCCccEEEccCCcCC
Q 005587          102 FSSIRVIDLSNNHIGGSIPSILP------VTMQNFFLSDNQFSGSI-------------PSSLATLTLLTDMSLNNNLLS  162 (689)
Q Consensus       102 l~~L~~L~Ls~N~l~~~~p~~~~------~~L~~L~Ls~N~l~~~~-------------p~~~~~l~~L~~L~Ls~N~l~  162 (689)
                      .+.|++||||.|-|.-.-+..+.      .+|++|+|.+|.+.-.-             -...++-+.|+++..++|++.
T Consensus        91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle  170 (382)
T KOG1909|consen   91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE  170 (382)
T ss_pred             CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence            34555566666655533332222      44555566555554110             111233345566666666654


Q ss_pred             CC----CChhhcCCCCCCEEEccCCCCCC----CCCCCccCCcccceeeccccccccc--c---cccCCcc-cccccccc
Q 005587          163 GE----IPDAFQSLTGLINLDLSSNNLSG----ELPPSLENLSQLTTLHLQNNQLSGT--L---DVLQDLP-LRDLNIEN  228 (689)
Q Consensus       163 g~----~p~~~~~l~~L~~L~Ls~N~l~g----~~p~~~~~l~~L~~L~Ls~N~l~~~--~---~~~~~l~-L~~L~Ls~  228 (689)
                      ..    +-..|...+.|+.+.++.|.|.-    .+-..|..+++|+.|||.+|-|+..  .   ..+..++ |++|++++
T Consensus       171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d  250 (382)
T KOG1909|consen  171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD  250 (382)
T ss_pred             cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence            21    11234445556666666665531    1112344556666666666655421  1   2233333 55666666


Q ss_pred             ccCC
Q 005587          229 NLFS  232 (689)
Q Consensus       229 N~l~  232 (689)
                      ..+.
T Consensus       251 cll~  254 (382)
T KOG1909|consen  251 CLLE  254 (382)
T ss_pred             cccc
Confidence            5554

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=98.10  E-value=2.1e-05  Score=78.86  Aligned_cols=144  Identities=17%  Similarity=0.225  Sum_probs=83.9

Q ss_pred             ceEeecCCeEEEEEEeCCCcEEEEEEeccccCChhhHHHHHHHHHHHhcCCCC--CcceecEEEEe---CCeEEEEEecc
Q 005587          515 NLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHA--NIVELKGYCAE---HGQRLLIYEYC  589 (689)
Q Consensus       515 ~~iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~~~~~e~~~l~~l~Hp--nIv~l~~~~~~---~~~~~lV~Ey~  589 (689)
                      +.|+.|..+.||+....+ +.+++|.....    .....+.+|..++..+...  .+.+++.+...   ....+++|+|+
T Consensus         3 ~~l~~G~~n~~~~v~~~~-~~~vlK~~~~~----~~~~~~~~e~~~~~~l~~~~~pvP~~~~~~~~~~~~~~~~~~~~~i   77 (239)
T PF01636_consen    3 RPLSGGFSNRVYRVTTDD-GRYVLKFYRPP----DAAERLRREAAVLRQLAEHGIPVPRVLAFDTSDEFNGFPYLLMEYI   77 (239)
T ss_dssp             EEEEESSSSEEEEEEETT-SEEEEEEESSH----HHHHHHHHHHHHHHHHHHTTSBS--EEEEEEETEETSEEEEEEEEE
T ss_pred             ccCCCCCeeeEEEEEECC-cEEEEEEeCCC----CCHHHHHHHHHHHHHHHhcCCCCceEEeecccccccccceEEEEEe
Confidence            578999999999998877 68999987543    3345666777777766433  34566665433   34679999999


Q ss_pred             CCCCHHH----------------H---HhcCcccCCCCCHHH---------HHHH------------HHHHHH-HHHHHH
Q 005587          590 SNGTLQD----------------M---LHSDDELKNNLSWNT---------RIRM------------ALGAAR-ALEYLH  628 (689)
Q Consensus       590 ~ggsL~~----------------~---l~~~~~~~~~l~~~~---------~~~i------------~~qia~-aL~yLH  628 (689)
                      +|..+..                .   ++..........+..         ....            ...+.+ .+..++
T Consensus        78 ~g~~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (239)
T PF01636_consen   78 PGRPLDDELSPEQRPELLRQLGRALAQLHQVPPPFSPFADWPEWRLEFLRQLESWTARLRASELFDDLEELEERLLQELE  157 (239)
T ss_dssp             SSEEHHHTSTHHHHHHHHHHHHHHHHHHHHSHTTCCCHTHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccchhhhhhcccccccccccccccccccccccccccccccccchhhhhhhHHHHHHHHHHHH
Confidence            9988877                1   111100001111110         0000            011222 333333


Q ss_pred             hC----CCCCcEEecccCCCeEec-CCCcEEEEeecCCcc
Q 005587          629 EI----CQPPIVHRNFKSANILLD-DDLAVSVSDCGLAPL  663 (689)
Q Consensus       629 ~~----~~~~iiHrDlKp~NILl~-~~~~~kl~DFGla~~  663 (689)
                      ..    ....++|+|+.|.|||++ +++.+.|+||+.+..
T Consensus       158 ~~~~~~~~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a~~  197 (239)
T PF01636_consen  158 ALLPKPLPPVLIHGDLHPGNILVDPSDGRIGIIDFEDAGW  197 (239)
T ss_dssp             HHHHCCSCEEEE-SS-SGGGEEEESSTTEEEE--GTT-EE
T ss_pred             hhhccCCCcEEEEeccccccceeeeccceeEEEecccceE
Confidence            21    234699999999999999 667778999998765

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=98.10  E-value=5.2e-05  Score=75.23  Aligned_cols=154  Identities=21%  Similarity=0.231  Sum_probs=96.2

Q ss_pred             chhhHhhhccCCCccce---EeecCCeEEEEEEeCCCcEEEEEEeccccCChhhH----------------------HHH
Q 005587          500 TIASLQQYTNSFSQENL---IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKD----------------------DEF  554 (689)
Q Consensus       500 ~~~~l~~~~~~f~~~~~---iG~G~~G~Vy~~~~~~g~~vAvK~l~~~~~~~~~~----------------------~~~  554 (689)
                      ++..+....+...+.+.   |+.|.-+.||+|.-.++..+|||+...........                      .-.
T Consensus        36 t~~~l~~L~~rg~i~~~~g~istGKEA~Vy~a~~~~~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~rr~lv~~W~  115 (268)
T COG1718          36 TLETLRRLLSRGVITELVGCISTGKEANVYLAETGDGRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSNRRKLVFAWA  115 (268)
T ss_pred             HHHHHHHHhcCCceeeeEeeecCCcceEEEeeccCCCceEEEEEEehhhhhhhhHHHHHhcChhhhcCCCCHHHHHHHHH
Confidence            44445444455555444   55677778999988889999999986432211110                      012


Q ss_pred             HHHHHHHhcCC--CCCcceecEEEEeCCeEEEEEeccCCCCH-HHHHhcCcccCCCCCHHHHHHHHHHHHHHHHHHHhCC
Q 005587          555 LELVNNIDRIR--HANIVELKGYCAEHGQRLLIYEYCSNGTL-QDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEIC  631 (689)
Q Consensus       555 ~~e~~~l~~l~--HpnIv~l~~~~~~~~~~~lV~Ey~~ggsL-~~~l~~~~~~~~~l~~~~~~~i~~qia~aL~yLH~~~  631 (689)
                      .+|.+.|.++.  +-.+.+-+++.    .-.|||||+..... .-.|++     -.+.......+..++++.+.-|-..+
T Consensus       116 ~kEf~NL~R~~eAGVrvP~Pi~~~----~nVLvMEfIg~~g~pAP~LkD-----v~~e~~e~~~~~~~~v~~~~~l~~~a  186 (268)
T COG1718         116 RKEFRNLKRAYEAGVRVPEPIAFR----NNVLVMEFIGDDGLPAPRLKD-----VPLELEEAEGLYEDVVEYMRRLYKEA  186 (268)
T ss_pred             HHHHHHHHHHHHcCCCCCCceeec----CCeEEEEeccCCCCCCCCccc-----CCcCchhHHHHHHHHHHHHHHHHHhc
Confidence            34566666553  33333333332    23699999965311 111211     12223356667777888888777632


Q ss_pred             CCCcEEecccCCCeEecCCCcEEEEeecCCcccc
Q 005587          632 QPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS  665 (689)
Q Consensus       632 ~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~  665 (689)
                        ++||+||..=|||+. ++.+.|+|||-|....
T Consensus       187 --~LVHgDLSEyNiL~~-~~~p~iID~~QaV~~~  217 (268)
T COG1718         187 --GLVHGDLSEYNILVH-DGEPYIIDVSQAVTID  217 (268)
T ss_pred             --CcccccchhhheEEE-CCeEEEEECccccccC
Confidence              899999999999999 8899999999988665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	689
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		2e-29
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		4e-29
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		8e-22
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		8e-22
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		8e-18
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		5e-17
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		5e-16
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		5e-16
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		6e-16
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		3e-15
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		4e-11
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		9e-11
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		1e-10
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		2e-10
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		2e-10
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		2e-10
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		2e-10
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		5e-10
4h58_A	275	Braf In Complex With Compound 3 Length = 275		6e-10
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		6e-10
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		6e-10
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		7e-10
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		7e-10
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		8e-10
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		8e-10
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		1e-09
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		1e-09
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		2e-09
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		2e-09
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		2e-09
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		2e-09
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		4e-09
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		4e-09
4f1m_A	287	Crystal Structure Of The G1179s Roco4 Kinase Domain		4e-09
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		6e-09
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		6e-09
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		1e-08
3my0_A	305	Crystal Structure Of The Acvrl1 (Alk1) Kinase Domai		2e-08
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-08
2pl0_A	289	Lck Bound To Imatinib Length = 289		3e-08
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		3e-08
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		3e-08
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		4e-08
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		4e-08
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		4e-08
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		4e-08
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		4e-08
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		4e-08
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		4e-08
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		4e-08
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		5e-08
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		5e-08
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		5e-08
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		5e-08
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		5e-08
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		5e-08
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		5e-08
2r2p_A	295	Kinase Domain Of Human Ephrin Type-A Receptor 5 (Ep		5e-08
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		5e-08
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		6e-08
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		6e-08
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		6e-08
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		6e-08
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		6e-08
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		6e-08
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		6e-08
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		7e-08
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		7e-08
4bbe_A	298	Aminoalkylpyrimidine Inhibitor Complexes With Jak2		7e-08
1rjb_A	344	Crystal Structure Of Flt3 Length = 344		7e-08
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		8e-08
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		9e-08
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		9e-08
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		1e-07
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		1e-07
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		1e-07
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		1e-07
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		1e-07
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		1e-07
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		1e-07
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		1e-07
1u5q_A	348	Crystal Structure Of The Tao2 Kinase Domain: Activa		1e-07
3k54_A	283	Structures Of Human Bruton's Tyrosine Kinase In Act		2e-07
2hen_A	286	Crystal Structure Of The Ephb2 Receptor Kinase Doma		2e-07
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		2e-07
3gen_A	283	The 1.6 A Crystal Structure Of Human Bruton's Tyros		2e-07
3p08_A	267	Crystal Structure Of The Human Btk Kinase Domain Le		2e-07
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		2e-07
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		2e-07
3pix_A	274	Crystal Structure Of Btk Kinase Domain Complexed Wi		2e-07
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		2e-07
3oct_A	265	Crystal Structure Of Bruton's Tyrosine Kinase Mutan		2e-07
1k2p_A	263	Crystal Structure Of Bruton's Tyrosine Kinase Domai		2e-07
1fvr_A	327	Tie2 Kinase Domain Length = 327		2e-07
2hel_A	306	Crystal Structure Of A Mutant Epha4 Kinase Domain (		2e-07
2gcd_A	309	Tao2 Kinase Domain-Staurosporine Structure Length =		2e-07
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		2e-07
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		2e-07
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		2e-07
3ocs_A	271	Crystal Structure Of Bruton's Tyrosine Kinase In Co		2e-07
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		2e-07
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		2e-07
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		2e-07
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		2e-07
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		2e-07
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		2e-07
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		2e-07
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		2e-07
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		2e-07
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		2e-07
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		2e-07
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		2e-07
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		2e-07
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		2e-07
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		2e-07
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		2e-07
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		2e-07
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		3e-07
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		3e-07
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		3e-07
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		3e-07
3a4o_X	286	Lyn Kinase Domain Length = 286		3e-07
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		3e-07
3q4t_A	322	Crystal Structure Of Activin Receptor Type-Iia (Acv		3e-07
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		3e-07
1zy4_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		3e-07
2xyu_A	285	Crystal Structure Of Epha4 Kinase Domain In Complex		3e-07
2y6m_A	291	Crystal Structure Of Epha4 Kinase Domain Length = 2		3e-07
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		3e-07
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		4e-07
1x8b_A	289	Structure Of Human Wee1a Kinase: Kinase Domain Comp		4e-07
3bi6_A	287	Wee1 Kinase Complex With Inhibitor Pd352396 Length		4e-07
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		4e-07
2rei_A	318	Kinase Domain Of Human Ephrin Type-a Receptor 7 (ep		4e-07
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		5e-07
2z2w_A	285	Humand Wee1 Kinase Complexed With Inhibitor Pf03357		5e-07
4apc_A	350	Crystal Structure Of Human Nima-Related Kinase 1 (N		5e-07
2in6_A	287	Wee1 Kinase Complex With Inhibitor Pd311839 Length		5e-07
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		5e-07
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		5e-07
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		6e-07
1zxe_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		6e-07
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		6e-07
2ivv_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		6e-07
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		6e-07
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		7e-07
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		8e-07
2ivt_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		8e-07
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		8e-07
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		8e-07
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		9e-07
2ivs_A	314	Crystal Structure Of Non-Phosphorylated Ret Tyrosin		9e-07
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		1e-06
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		1e-06
2hk5_A	270	Hck Kinase In Complex With Lck Targetted Inhibitor		1e-06
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		1e-06
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		1e-06
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		1e-06
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		1e-06
2j51_A	325	Crystal Structure Of Human Ste20-Like Kinase Bound		1e-06
2jfm_A	325	Crystal Structure Of Human Ste20-Like Kinase (Unlig		2e-06
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		2e-06
2jfl_A	325	Crystal Structure Of Human Ste20-Like Kinase ( Diph		2e-06
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		2e-06
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		2e-06
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		2e-06
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		2e-06
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		3e-06
1zyc_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		3e-06
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		3e-06
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		3e-06
1b6c_B	342	Crystal Structure Of The Cytoplasmic Domain Of The		3e-06
3bkb_A	377	Crystal Structure Of Human Feline Sarcoma Viral Onc		3e-06
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		4e-06
1py5_A	326	Crystal Structure Of Tgf-Beta Receptor I Kinase Wit		4e-06
2wqm_A	310	Structure Of Apo Human Nek7 Length = 310		4e-06
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		4e-06
3tzm_A	309	Tgf-Beta Receptor Type 1 In Complex With Sb431542 L		4e-06
1rw8_A	301	Crystal Structure Of Tgf-Beta Receptor I Kinase Wit		4e-06
4aaa_A	331	Crystal Structure Of The Human Cdkl2 Kinase Domain		4e-06
2wot_A	306	Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)		5e-06
1vjy_A	303	Crystal Structure Of A Naphthyridine Inhibitor Of H		5e-06
2qlu_A	314	Crystal Structure Of Activin Receptor Type Ii Kinas		7e-06
3com_A	314	Crystal Structure Of Mst1 Kinase Length = 314		7e-06
4e4l_A	302	Jak1 Kinase (Jh1 Domain) In Complex With Compound 3		8e-06
3eyg_A	290	Crystal Structures Of Jak1 And Jak2 Inhibitor Compl		1e-05
2y4i_B	319	Ksr2-Mek1 Heterodimer Length = 319		1e-05
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		1e-05
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		1e-05
3kxx_A	317	Structure Of The Mutant Fibroblast Growth Factor Re		1e-05
3cok_A	278	Crystal Structure Of Plk4 Kinase Length = 278		1e-05
3g2f_A	336	Crystal Structure Of The Kinase Domain Of Bone Morp		1e-05
2p0c_A	313	Catalytic Domain Of The Proto-Oncogene Tyrosine-Pro		1e-05
3mdy_A	337	Crystal Structure Of The Cytoplasmic Domain Of The		2e-05
3ika_A	331	Crystal Structure Of Egfr 696-1022 T790m Mutant Cov		2e-05
4i24_A	329	Structure Of T790m Egfr Kinase Domain Co-crystalliz		2e-05
2uv2_A	287	Crystal Structure Of Human Ste20-Like Kinase Bound		2e-05
4g5p_A	330	Crystal Structure Of Egfr Kinase T790m In Complex W		2e-05
3tt0_A	382	Co-Structure Of Fibroblast Growth Factor Receptor 1		2e-05
2jit_A	327	Crystal Structure Of Egfr Kinase Domain T790m Mutat		2e-05
2qkr_A	313	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		2e-05
1luf_A	343	Crystal Structure Of The Musk Tyrosine Kinase: Insi		2e-05
2jiu_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		2e-05
2jiv_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		2e-05
4hvd_A	314	Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h		2e-05
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		2e-05
1xkk_A	352	Egfr Kinase Domain Complexed With A Quinazoline Inh		2e-05
2gs2_A	330	Crystal Structure Of The Active Egfr Kinase Domain		2e-05
4i23_A	329	Crystal Structure Of The Wild-type Egfr Kinase Doma		2e-05
4g5j_A	330	Crystal Structure Of Egfr Kinase In Complex With Bi		2e-05
1i09_A	420	Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Len		2e-05
2j5f_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		2e-05
1pyx_A	422	Gsk-3 Beta Complexed With Amp-Pnp Length = 422		2e-05
2g15_A	318	Structural Characterization Of Autoinhibited C-Met		2e-05
3vjo_A	334	Crystal Structure Of The Wild-Type Egfr Kinase Doma		2e-05
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-05
3niz_A	311	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		2e-05
3gqi_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		2e-05
3pjc_A	315	Crystal Structure Of Jak3 Complexed With A Potent A		2e-05
3say_A	430	Crystal Structure Of Human Glycogen Synthase Kinase		2e-05
4acc_A	465	Gsk3b In Complex With Inhibitor Length = 465		2e-05
3lxk_A	327	Structural And Thermodynamic Characterization Of Th		2e-05
2r0i_A	327	Crystal Structure Of A Kinase Mark2PAR-1 Mutant Len		2e-05
2gs7_A	330	Crystal Structure Of The Inactive Egfr Kinase Domai		2e-05
3cjf_A	309	Crystal Structure Of Vegfr2 In Complex With A 3,4,5		2e-05
3c7q_A	316	Structure Of Vegfr2 Kinase Domain In Complex With B		2e-05
1yvj_A	290	Crystal Structure Of The Jak3 Kinase Domain In Comp		2e-05
2j5e_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		2e-05
3q6u_A	308	Structure Of The Apo Met Receptor Kinase In The Dua		2e-05
1q3d_A	424	Gsk-3 Beta Complexed With Staurosporine Length = 42		2e-05
4hjo_A	337	Crystal Structure Of The Inactive Egfr Tyrosine Kin		2e-05
1q5k_A	414	Crystal Structure Of Glycogen Synthase Kinase 3 In		2e-05
4aoj_A	329	Human Trka In Complex With The Inhibitor Az-23 Leng		2e-05
3q6w_A	307	Structure Of Dually-phosphorylated Met Receptor Kin		2e-05
1m14_A	333	Tyrosine Kinase Domain From Epidermal Growth Factor		3e-05
4gg5_A	319	Crystal Structure Of Cmet In Complex With Novel Inh		3e-05
2wd1_A	292	Human C-Met Kinase In Complex With Azaindole Inhibi		3e-05
3bel_A	315	X-Ray Structure Of Egfr In Complex With Oxime Inhib		3e-05
3lq8_A	302	Structure Of The Kinase Domain Of C-Met Bound To Xl		3e-05
3zdi_A	350	Glycogen Synthase Kinase 3 Beta Complexed With Axin		3e-05
3zrk_A	371	Identification Of 2-(4-Pyridyl)thienopyridinones As		3e-05
3lzb_A	327	Egfr Kinase Domain Complexed With An Imidazo[2,1-B]		3e-05
1gng_A	378	Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With		3e-05
4afj_A	367	5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selec		3e-05
2x7f_A	326	Crystal Structure Of The Kinase Domain Of Human Tra		3e-05
2o5k_A	372	Crystal Structure Of Gsk3beta In Complex With A Ben		3e-05
3sd0_A	350	Identification Of A Glycogen Synthase Kinase-3b Inh		3e-05
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		3e-05
1r0e_A	391	Glycogen Synthase Kinase-3 Beta In Complex With 3-I		3e-05
3nz0_A	302	Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 3		3e-05
3f88_A	349	Glycogen Synthase Kinase 3beta Inhibitor Complex Le		3e-05
2ow3_A	352	Glycogen Synthase Kinase-3 Beta In Complex With Bis		3e-05
1zmw_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		3e-05
3nyx_A	302	Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-T		3e-05
3gb2_A	353	Gsk3beta Inhibitor Complex Length = 353		3e-05
2w9f_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		3e-05
2w5a_A	279	Human Nek2 Kinase Adp-Bound Length = 279		3e-05
4f0i_A	300	Crystal Structure Of Apo Trka Length = 300		3e-05
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-05
3f7z_A	350	X-ray Co-crystal Structure Of Glycogen Synthase Kin		3e-05
1zmu_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		3e-05
2w99_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		3e-05
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		3e-05
3js2_A	317	Crystal Structure Of Minimal Kinase Domain Of Fibro		3e-05
2wgj_A	306	X-Ray Structure Of Pf-02341066 Bound To The Kinase		3e-05
3sxr_A	268	Crystal Structure Of Bmx Non-Receptor Tyrosine Kina		3e-05
4dit_A	382	Crystal Structure Of Gsk3beta In Complex With A Imi		3e-05
3i5n_A	309	Crystal Structure Of C-Met With Triazolopyridazine		3e-05
2w96_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		3e-05
4gt5_A	306	Crystal Structure Of The Inactive Trka Kinase Domai		3e-05
2rfn_A	310	X-ray Structure Of C-met With Inhibitor. Length = 3		3e-05
1fgk_A	310	Crystal Structure Of The Tyrosine Kinase Domain Of		3e-05
2jav_A	279	Human Kinase With Pyrrole-Indolinone Ligand Length		3e-05
3f66_A	298	Human C-Met Kinase In Complex With Quinoxaline Inhi		3e-05
4f63_A	309	Crystal Structure Of Human Fibroblast Growth Factor		3e-05
3rhx_B	306	Crystal Structure Of The Catalytic Domain Of Fgfr1		3e-05
4a4x_A	279	Nek2-Ede Bound To Cct248662 Length = 279		4e-05
3ll6_A	337	Crystal Structure Of The Human Cyclin G Associated		4e-05
3gql_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		4e-05
3g33_A	308	Crystal Structure Of Cdk4CYCLIN D3 Length = 308		4e-05
3dak_A	290	Crystal Structure Of Domain-Swapped Osr1 Kinase Dom		4e-05
1v0o_A	288	Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulpho		4e-05
3c4f_A	302	Fgfr Tyrosine Kinase Domain In Complex With 3-(3- M		4e-05
1ob3_A	288	Structure Of P. Falciparum Pfpk5 Length = 288		4e-05
2vwi_A	303	Structure Of The Osr1 Kinase, A Hypertension Drug T		4e-05
1v0b_A	288	Crystal Structure Of The T198a Mutant Of Pfpk5 Leng		4e-05
2rfd_A	324	Crystal Structure Of The Complex Between The Egfr K		5e-05
3c1x_A	373	Crystal Structure Of The Tyrosine Kinase Domain Of		5e-05
3cjg_A	309	Crystal Structure Of Vegfr2 In Complex With A 3,4,5		6e-05
2hak_A	328	Catalytic And Ubiqutin-Associated Domains Of Mark1P		6e-05
2wzj_A	327	Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82		6e-05
3h9r_A	330	Crystal Structure Of The Kinase Domain Of Type I Ac		6e-05
1zmv_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		6e-05
3a4p_A	319	Human C-Met Kinase Domain Complexed With 6-Benzylox		6e-05
2oh4_A	316	Crystal Structure Of Vegfr2 With A Benzimidazole-Ur		6e-05
3dkg_A	317	Sgx Clone 5698a109kfg1h1 Length = 317		6e-05
3lmg_A	344	Crystal Structure Of The Erbb3 Kinase Domain In Com		6e-05
3qti_A	314	C-Met Kinase In Complex With Nvp-Bvu972 Length = 31		6e-05
3mtf_A	301	Crystal Structure Of The Acvr1 Kinase In Complex Wi		6e-05
4dym_A	301	Crystal Structure Of The Acvr1 Kinase Domain In Com		6e-05
3cth_A	314	Crystal Structure Of The Tyrosine Kinase Domain Of		6e-05
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		7e-05
3dkc_A	317	Sgx Clone 5698a65kfg1h1 Length = 317		7e-05
1r0p_A	312	Crystal Structure Of The Tyrosine Kinase Domain Of		7e-05
4fie_A	423	Full-Length Human Pak4 Length = 423		7e-05
2pwl_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		7e-05
2cdz_A	303	Crystal Structure Of The Human P21-Activated Kinase		7e-05
3kex_A	325	Crystal Structure Of The Catalytically Inactive Kin		7e-05
2pzp_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		8e-05
2bva_A	292	Crystal Structure Of The Human P21-Activated Kinase		8e-05
2x4z_A	296	Crystal Structure Of The Human P21-Activated Kinase		8e-05
2psq_A	370	Crystal Structure Of Unphosphorylated Unactivated W		8e-05
2p2i_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		8e-05
1ywn_A	316	Vegfr2 In Complex With A Novel 4-amino-furo[2,3-d]p		8e-05
4agc_A	353	Crystal Structure Of Vegfr2 (Juxtamembrane And Kina		8e-05
4gt4_A	308	Structure Of Unliganded, Inactive Ror2 Kinase Domai		8e-05
2pvf_A	334	Crystal Structure Of Tyrosine Phosphorylated Activa		8e-05
4fif_A	346	Catalytic Domain Of Human Pak4 With Rpkplvdp Peptid		8e-05
4agu_A	311	Crystal Structure Of The Human Cdkl1 Kinase Domain		8e-05
3zzw_A	289	Crystal Structure Of The Kinase Domain Of Ror2 Leng		8e-05
2pvy_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		8e-05
2p2h_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		8e-05
1vr2_A	316	Human Vascular Endothelial Growth Factor Receptor 2		8e-05
2q0n_A	301	Structure Of Human P21 Activating Kinase 4 (Pak4) I		9e-05
2xir_A	316	Crystal Structure Of The Vegfr2 Kinase Domain In Co		9e-05
2ogv_A	317	Crystal Structure Of The Autoinhibited Human C-Fms		9e-05
2pz5_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		9e-05
3vnt_A	318	Crystal Structure Of The Kinase Domain Of Human Veg		9e-05
3cly_A	334	Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase		9e-05
1gjo_A	316	The Fgfr2 Tyrosine Kinase Domain Length = 316		1e-04
3ug1_A	334	Crystal Structure Of The Mutated Egfr Kinase Domain		1e-04
3fe3_A	328	Crystal Structure Of The Kinase Mark3PAR-1: T211a-S		1e-04
3qup_A	323	Inhibitor Bound Structure Of The Kinase Domain Of T		1e-04
4asz_A	299	Crystal Structure Of Apo Trkb Kinase Domain Length		1e-04
4e7w_A	394	Structure Of Gsk3 From Ustilago Maydis Length = 394		1e-04
3b2t_A	311	Structure Of Phosphotransferase Length = 311		1e-04
1uv5_A	350	Glycogen Synthase Kinase 3 Beta Complexed With 6-Br		1e-04
3ewh_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		1e-04
3u6j_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		1e-04
3ri1_A	313	Crystal Structure Of The Catalytic Domain Of Fgfr2		1e-04
2pzr_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		1e-04
1h8f_A	352	Glycogen Synthase Kinase 3 Beta. Length = 352		1e-04
3lcd_A	329	Inhibitor Bound To A Dfg-In Structure Of The Kinase		1e-04
3v5q_A	297	Discovery Of A Selective Trk Inhibitor With Efficac		1e-04
2itn_A	327	Crystal Structure Of Egfr Kinase Domain G719s Mutat		1e-04
2eb2_A	334	Crystal Structure Of Mutated Egfr Kinase Domain (G7		1e-04
2qnj_A	328	Kinase And Ubiquitin-Associated Domains Of Mark3PAR		1e-04
3iec_A	319	Helicobacter Pylori Caga Inhibits Par1MARK FAMILY K		1e-04
1a06_A	332	Calmodulin-Dependent Protein Kinase From Rat Length		1e-04
3gop_A	361	Crystal Structure Of The Egf Receptor Juxtamembrane		1e-04
4ebw_A	304	Structure Of Focal Adhesion Kinase Catalytic Domain		1e-04
1o9u_A	350	Glycogen Synthase Kinase 3 Beta Complexed With Axin		2e-04
1y8g_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		2e-04
2j0m_B	276	Crystal Structure A Two-Chain Complex Between The F		2e-04
1mp8_A	281	Crystal Structure Of Focal Adhesion Kinase (Fak) Le		2e-04
2f57_A	317	Crystal Structure Of The Human P21-activated Kinase		2e-04
3bz3_A	276	Crystal Structure Analysis Of Focal Adhesion Kinase		2e-04
3pxk_A	282	Focal Adhesion Kinase Catalytic Domain In Complex W		2e-04
2etm_A	281	Crystal Structure Of Focal Adhesion Kinase Domain C		2e-04
3pxf_A	306	Cdk2 In Complex With Two Molecules Of 8-Anilino-1-N		2e-04
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		2e-04
4erw_A	306	Cdk2 In Complex With Staurosporine Length = 306		2e-04
3bea_A	333	Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A P		2e-04
3lxn_A	318	Structural And Thermodynamic Characterization Of Th		2e-04
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-04
2jkk_A	276	Focal Adhesion Kinase Catalytic Domain In Complex W		3e-04
2i1m_A	333	Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An		3e-04
4fg7_A	293	Crystal Structure Of Human Calcium/calmodulin-depen		3e-04
4ec8_A	373	Structure Of Full Length Cdk9 In Complex With Cycli		3e-04
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		3e-04
2jkm_A	276	Focal Adhesion Kinase Catalytic Domain In Complex W		3e-04
3a60_A	327	Crystal Structure Of Unphosphorylated P70s6k1 (Form		3e-04
2jc6_A	334	Crystal Structure Of Human Calmodulin-Dependent Pro		3e-04
2j0k_A	656	Crystal Structure Of A Fragment Of Focal Adhesion K		3e-04
2j0l_A	276	Crystal Structure Of A The Active Conformation Of T		3e-04
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		3e-04
3a62_A	327	Crystal Structure Of Phosphorylated P70s6k1 Length		3e-04
4fg8_A	315	Crystal Structure Of Human Calcium/calmodulin-depen		4e-04
3nrm_A	283	Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito		4e-04
2j0j_A	656	Crystal Structure Of A Fragment Of Focal Adhesion K		4e-04
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		4e-04
4fg9_A	320	Crystal Structure Of Human Calcium/calmodulin-depen		4e-04
3o50_A	267	Crystal Structure Of Benzamide 9 Bound To Auroraa L		4e-04
3e5a_A	268	Crystal Structure Of Aurora A In Complex With Vx-68		4e-04
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		4e-04
3mi9_A	351	Crystal Structure Of Hiv-1 Tat Complexed With Human		4e-04
3h0y_A	268	Aurora A In Complex With A Bisanilinopyrimidine Len		4e-04
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		4e-04
3blh_A	331	Crystal Structure Of Human Cdk9CYCLINT1 Length = 33		4e-04
2w1d_A	275	Structure Determination Of Aurora Kinase In Complex		4e-04
3ha6_A	268	Crystal Structure Of Aurora A In Complex With Tpx2		4e-04
2xru_A	280	Aurora-A T288e Complexed With Pha-828300 Length = 2		5e-04
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		5e-04
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		5e-04
2w1c_A	275	Structure Determination Of Aurora Kinase In Complex		5e-04
3lau_A	287	Crystal Structure Of Aurora2 Kinase In Complex With		5e-04
2c6e_A	283	Aurora A Kinase Activated Mutant (T287d) In Complex		5e-04
3d14_A	272	Crystal Structure Of Mouse Aurora A (Asn186->gly, L		5e-04
3unz_A	279	Aurora A In Complex With Rpm1679 Length = 279		5e-04
3fdn_A	279	Structure-Based Drug Design Of Novel Aurora Kinase		5e-04
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		5e-04
2bmc_A	306	Aurora-2 T287d T288d Complexed With Pha-680632 Leng		5e-04
2q0b_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		5e-04
3daj_A	272	Crystal Structure Of Aurora A Complexed With An Inh		5e-04
2iw6_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A Com		5e-04
3hyh_A	275	Crystal Structure Of The Protein Kinase Domain Of Y		5e-04
1ol5_A	282	Structure Of Aurora-A 122-403, Phosphorylated On Th		6e-04
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		6e-04
3dae_A	283	Crystal Structure Of Phosphorylated Snf1 Kinase Dom		6e-04
3mn3_A	271	An Inhibited Conformation For The Protein Kinase Do		6e-04
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		6e-04
2fh9_A	274	Structure And Dimerization Of The Kinase Domain Fro		6e-04
4e1z_A	291	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		6e-04
4e20_A	290	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		7e-04
2wqe_A	262	Structure Of S155r Aurora-A Somatic Mutant Length =		7e-04
2i0v_A	335	C-Fms Tyrosine Kinase In Complex With A Quinolone I		7e-04
2py3_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		7e-04
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		7e-04
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		7e-04
3ori_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain L33d		7e-04
3qhr_A	298	Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic		7e-04
3f61_A	311	Crystal Structure Of M. Tuberculosis Pknb Leu33aspV		8e-04
1ogu_A	302	Structure Of Human Thr160-phospho Cdk2/cyclin A Com		8e-04
1oit_A	299	Imidazopyridines: A Potent And Selective Class Of C		8e-04
4eos_A	300	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		8e-04
4eop_A	300	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		8e-04
3ezr_A	300	Cdk-2 With Indazole Inhibitor 17 Bound At Its Activ		9e-04
4eoq_A	301	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		9e-04
4bcq_A	301	Structure Of Cdk2 In Complex With Cyclin A And A 2-		9e-04
1gz8_A	299	Human Cyclin Dependent Kinase 2 Complexed With The		9e-04
1h1p_A	303	Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMP		9e-04

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score =  127 bits (318), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 98/168 (58%), Gaps = 1/168 (0%)
Query: 497 RSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLE 556
           + F++  LQ  +++FS +N++G G  G VY+ +L DG L+AVK+L K    Q  + +F  
Sbjct: 26  KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRL-KEERXQGGELQFQT 84
Query: 557 LVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRM 616
            V  I    H N++ L+G+C    +RLL+Y Y +NG++   L    E +  L W  R R+
Sbjct: 85  EVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRI 144
Query: 617 ALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           ALG+AR L YLH+ C P I+HR+ K+ANI         V D GLA L+
Sbjct: 145 ALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLM 192

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score =  126 bits (317), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 98/168 (58%), Gaps = 1/168 (0%)
Query: 497 RSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLE 556
           + F++  LQ  +++F  +N++G G  G VY+ +L DG L+AVK+L K   +Q  + +F  
Sbjct: 18  KRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRL-KEERTQGGELQFQT 76
Query: 557 LVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRM 616
            V  I    H N++ L+G+C    +RLL+Y Y +NG++   L    E +  L W  R R+
Sbjct: 77  EVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRI 136
Query: 617 ALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           ALG+AR L YLH+ C P I+HR+ K+ANI         V D GLA L+
Sbjct: 137 ALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLM 184

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score =  102 bits (254), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 95/176 (53%), Gaps = 6/176 (3%)
Query: 486 STKTAKPFTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRA 545
           S+    PF + R   +  L++ TN+F  + LIG G+ G VY+  L DG  +A+K+  +  
Sbjct: 17  SSSYLVPFESYR-VPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKR--RTP 73
Query: 546 SSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELK 605
            S Q  +EF   +  +   RH ++V L G+C E  + +LIY+Y  NG L+  L+  D   
Sbjct: 74  ESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPT 133
Query: 606 NNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
            ++SW  R+ + +GAAR L YLH      I+HR+ KS NI         ++D G++
Sbjct: 134 MSMSWEQRLEICIGAARGLHYLH---TRAIIHRDVKSINILLDENFVPKITDFGIS 186

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score =  102 bits (254), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 95/176 (53%), Gaps = 6/176 (3%)
Query: 486 STKTAKPFTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRA 545
           S+    PF + R   +  L++ TN+F  + LIG G+ G VY+  L DG  +A+K+  +  
Sbjct: 17  SSSYLVPFESYR-VPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKR--RTP 73
Query: 546 SSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELK 605
            S Q  +EF   +  +   RH ++V L G+C E  + +LIY+Y  NG L+  L+  D   
Sbjct: 74  ESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPT 133
Query: 606 NNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
            ++SW  R+ + +GAAR L YLH      I+HR+ KS NI         ++D G++
Sbjct: 134 MSMSWEQRLEICIGAARGLHYLH---TRAIIHRDVKSINILLDENFVPKITDFGIS 186

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 82/157 (52%), Gaps = 3/157 (1%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           IGAG  G+V+RA+   G  +AVK L ++    ++ +EFL  V  + R+RH NIV   G  
Sbjct: 45  IGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAV 103
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +     ++ EY S G+L  +LH     +  L    R+ MA   A+ + YLH    PPIV
Sbjct: 104 TQPPNLSIVTEYLSRGSLYRLLHKSGA-REQLDERRRLSMAYDVAKGMNYLHN-RNPPIV 161
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQVS 673
           HRN KS N+       V V D GL+ L +S  +S  S
Sbjct: 162 HRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKS 198

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           IGAG  G+V+RA+   G  +AVK L ++    ++ +EFL  V  + R+RH NIV   G  
Sbjct: 45  IGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAV 103
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +     ++ EY S G+L  +LH     +  L    R+ MA   A+ + YLH    PPIV
Sbjct: 104 TQPPNLSIVTEYLSRGSLYRLLHKSGA-REQLDERRRLSMAYDVAKGMNYLHN-RNPPIV 161
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
           HR+ KS N+       V V D GL+ L +S
Sbjct: 162 HRDLKSPNLLVDKKYTVKVCDFGLSRLKAS 191

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 82.8 bits (203), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 13/176 (7%)
Query: 494 TTARSFTIASLQQYTNSFSQE------NLIGAGMLGSVYRAQLPDGKLLAVKKLDKRA-- 545
           T   SF+   L+  TN+F +       N +G G  G VY+  + +   +AVKKL      
Sbjct: 10  TRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDI 68
Query: 546 SSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELK 605
           ++++   +F + +  + + +H N+VEL G+ ++     L+Y Y  NG+L D L   D   
Sbjct: 69  TTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTP 128
Query: 606 NNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
             LSW+ R ++A GAA  + +LHE      +HR+ KSANI         +SD GLA
Sbjct: 129 -PLSWHMRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLA 180

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 82.8 bits (203), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 13/176 (7%)
Query: 494 TTARSFTIASLQQYTNSFSQE------NLIGAGMLGSVYRAQLPDGKLLAVKKLDKRA-- 545
           T   SF+   L+  TN+F +       N +G G  G VY+  + +   +AVKKL      
Sbjct: 10  TRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDI 68
Query: 546 SSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELK 605
           ++++   +F + +  + + +H N+VEL G+ ++     L+Y Y  NG+L D L   D   
Sbjct: 69  TTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTP 128
Query: 606 NNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
             LSW+ R ++A GAA  + +LHE      +HR+ KSANI         +SD GLA
Sbjct: 129 -PLSWHMRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLA 180

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 13/176 (7%)
Query: 494 TTARSFTIASLQQYTNSFSQE------NLIGAGMLGSVYRAQLPDGKLLAVKKLDKRA-- 545
           T   SF+   L+  TN+F +       N +G G  G VY+  + +   +AVKKL      
Sbjct: 4   TRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDI 62
Query: 546 SSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELK 605
           ++++   +F + +  + + +H N+VEL G+ ++     L+Y Y  NG+L D L   D   
Sbjct: 63  TTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTP 122
Query: 606 NNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
             LSW+ R ++A GAA  + +LHE      +HR+ KSANI         +SD GLA
Sbjct: 123 -PLSWHMRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLA 174

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 88/176 (50%), Gaps = 13/176 (7%)
Query: 494 TTARSFTIASLQQYTNSFSQE------NLIGAGMLGSVYRAQLPDGKLLAVKKLDKRA-- 545
           T   SF+   L+  TN+F +       N  G G  G VY+  + +   +AVKKL      
Sbjct: 1   TRFHSFSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYV-NNTTVAVKKLAAMVDI 59
Query: 546 SSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELK 605
           ++++   +F + +    + +H N+VEL G+ ++     L+Y Y  NG+L D L   D   
Sbjct: 60  TTEELKQQFDQEIKVXAKCQHENLVELLGFSSDGDDLCLVYVYXPNGSLLDRLSCLDGTP 119
Query: 606 NNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
             LSW+ R ++A GAA  + +LHE      +HR+ KSANI         +SD GLA
Sbjct: 120 -PLSWHXRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLA 171

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 9/161 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           IG+G  G+VY+ +      +AVK L+  A + Q+   F   V  + + RH NI+   GY 
Sbjct: 20  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 77
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +  Q  ++ ++C   +L   LH+ +           I +A   AR ++YLH      I+
Sbjct: 78  TK-PQLAIVTQWCEGSSLYHHLHASE---TKFEMKKLIDIARQTARGMDYLHA---KSII 130
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQVSHNLT 677
           HR+ KS NI       V + D GLA + S  S S     L+
Sbjct: 131 HRDLKSNNIFLHEDNTVKIGDFGLATVKSRWSGSHQFEQLS 171

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 11/155 (7%)
Query: 510 SFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
           +F QE  IG+G  G V+     +   +A+K + + + S+   D+F+E    + ++ H  +
Sbjct: 30  TFVQE--IGSGQFGLVHLGYWLNKDKVAIKTIKEGSMSE---DDFIEEAEVMMKLSHPKL 84
Query: 570 VELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
           V+L G C E     L++E+  +G L D L +   L    +  T + M L     + YL E
Sbjct: 85  VQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGL---FAAETLLGMCLDVCEGMAYLEE 141
Query: 630 ICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
            C   ++HR+  + N        + VSD G+   +
Sbjct: 142 AC---VIHRDLAARNCLVGENQVIKVSDFGMTRFV 173

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 9/145 (6%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           IG+G  G+VY+ +      +AVK L+  A + Q+   F   V  + + RH NI+   GY 
Sbjct: 32  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 89
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +  Q  ++ ++C   +L   LH+ +           I +A   AR ++YLH      I+
Sbjct: 90  TK-PQLAIVTQWCEGSSLYHHLHASE---TKFEMKKLIDIARQTARGMDYLHA---KSII 142
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLA 661
           HR+ KS NI       V + D GLA
Sbjct: 143 HRDLKSNNIFLHEDNTVKIGDFGLA 167

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 11/155 (7%)
Query: 510 SFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
           +F QE  IG+G  G V+     +   +A+K + + A S++   +F+E    + ++ H  +
Sbjct: 10  TFVQE--IGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEE---DFIEEAEVMMKLSHPKL 64
Query: 570 VELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
           V+L G C E     L++E+  +G L D L +   L    +  T + M L     + YL E
Sbjct: 65  VQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGL---FAAETLLGMCLDVCEGMAYLEE 121
Query: 630 ICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
            C   ++HR+  + N        + VSD G+   +
Sbjct: 122 AC---VIHRDLAARNCLVGENQVIKVSDFGMTRFV 153

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 11/155 (7%)
Query: 510 SFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
           +F QE  IG+G  G V+     +   +A+K + + A S++   +F+E    + ++ H  +
Sbjct: 8   TFVQE--IGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEE---DFIEEAEVMMKLSHPKL 62
Query: 570 VELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
           V+L G C E     L++E+  +G L D L +   L    +  T + M L     + YL E
Sbjct: 63  VQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGL---FAAETLLGMCLDVCEGMAYLEE 119
Query: 630 ICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
            C   ++HR+  + N        + VSD G+   +
Sbjct: 120 AC---VIHRDLAARNCLVGENQVIKVSDFGMTRFV 151

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 11/155 (7%)
Query: 510 SFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
           +F QE  IG+G  G V+     +   +A+K + + A S++   +F+E    + ++ H  +
Sbjct: 13  TFVQE--IGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEE---DFIEEAEVMMKLSHPKL 67
Query: 570 VELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
           V+L G C E     L++E+  +G L D L +   L    +  T + M L     + YL E
Sbjct: 68  VQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGL---FAAETLLGMCLDVCEGMAYLEE 124
Query: 630 ICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
            C   ++HR+  + N        + VSD G+   +
Sbjct: 125 AC---VIHRDLAARNCLVGENQVIKVSDFGMTRFV 156

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 73/161 (45%), Gaps = 9/161 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           IG+G  G+VY+ +      +AVK L+  A + Q+   F   V  + + RH NI+   GY 
Sbjct: 32  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 89
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
               Q  ++ ++C   +L   LH+ +           I +A   AR ++YLH      I+
Sbjct: 90  TA-PQLAIVTQWCEGSSLYHHLHASE---TKFEMKKLIDIARQTARGMDYLHA---KSII 142
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQVSHNLT 677
           HR+ KS NI       V + D GLA   S  S S     L+
Sbjct: 143 HRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLS 183

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 9/161 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           IG+G  G+VY+ +      +AVK L+  A + Q+   F   V  + + RH NI+   GY 
Sbjct: 21  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 78
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +  Q  ++ ++C   +L   LH    ++        I +A   A+ ++YLH      I+
Sbjct: 79  TK-PQLAIVTQWCEGSSLYHHLHI---IETKFEMIKLIDIARQTAQGMDYLHA---KSII 131
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQVSHNLT 677
           HR+ KS NI       V + D GLA + S  S S     L+
Sbjct: 132 HRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLS 172

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 9/161 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           IG+G  G+VY+ +      +AVK L+  A + Q+   F   V  + + RH NI+   GY 
Sbjct: 16  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 73
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +  Q  ++ ++C   +L   LH    ++        I +A   A+ ++YLH      I+
Sbjct: 74  TK-PQLAIVTQWCEGSSLYHHLHI---IETKFEMIKLIDIARQTAQGMDYLHA---KSII 126
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQVSHNLT 677
           HR+ KS NI       V + D GLA + S  S S     L+
Sbjct: 127 HRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLS 167

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 9/161 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           IG+G  G+VY+ +      +AVK L+  A + Q+   F   V  + + RH NI+   GY 
Sbjct: 21  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 78
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +  Q  ++ ++C   +L   LH    ++        I +A   A+ ++YLH      I+
Sbjct: 79  TK-PQLAIVTQWCEGSSLYHHLHI---IETKFEMIKLIDIARQTAQGMDYLHA---KSII 131
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQVSHNLT 677
           HR+ KS NI       V + D GLA + S  S S     L+
Sbjct: 132 HRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLS 172

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 9/161 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           IG+G  G+VY+ +      +AVK L+  A + Q+   F   V  + + RH NI+   GY 
Sbjct: 18  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 75
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +  Q  ++ ++C   +L   LH    ++        I +A   A+ ++YLH      I+
Sbjct: 76  TK-PQLAIVTQWCEGSSLYHHLHI---IETKFEMIKLIDIARQTAQGMDYLHA---KSII 128
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQVSHNLT 677
           HR+ KS NI       V + D GLA + S  S S     L+
Sbjct: 129 HRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLS 169

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 9/161 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           IG+G  G+VY+ +      +AVK L+  A + Q+   F   V  + + RH NI+   GY 
Sbjct: 44  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 101
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +  Q  ++ ++C   +L   LH    ++        I +A   A+ ++YLH      I+
Sbjct: 102 TK-PQLAIVTQWCEGSSLYHHLHI---IETKFEMIKLIDIARQTAQGMDYLHA---KSII 154
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQVSHNLT 677
           HR+ KS NI       V + D GLA + S  S S     L+
Sbjct: 155 HRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLS 195

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 9/161 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           IG+G  G+VY+ +      +AVK L+  A + Q+   F   V  + + RH NI+   GY 
Sbjct: 43  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 100
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +  Q  ++ ++C   +L   LH    ++        I +A   A+ ++YLH      I+
Sbjct: 101 TK-PQLAIVTQWCEGSSLYHHLHI---IETKFEMIKLIDIARQTAQGMDYLHA---KSII 153
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQVSHNLT 677
           HR+ KS NI       V + D GLA + S  S S     L+
Sbjct: 154 HRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLS 194

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 18/142 (12%)
Query: 511 FSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDR------- 563
            + E +IG G  G VYRA    G  +AVK     A+    D++  + + N+ +       
Sbjct: 9   LTLEEIIGIGGFGKVYRA-FWIGDEVAVK-----AARHDPDEDISQTIENVRQEAKLFAM 62
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
           ++H NI+ L+G C +     L+ E+   G L  +L         +  +  +  A+  AR 
Sbjct: 63  LKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSG-----KRIPPDILVNWAVQIARG 117
Query: 624 LEYLHEICQPPIVHRNFKSANI 645
           + YLH+    PI+HR+ KS+NI
Sbjct: 118 MNYLHDEAIVPIIHRDLKSSNI 139

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 11/155 (7%)
Query: 510 SFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
           +F QE  IG+G  G V+     +   +A+K + + A S++   +F+E    + ++ H  +
Sbjct: 11  TFVQE--IGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEE---DFIEEAEVMMKLSHPKL 65
Query: 570 VELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
           V+L G C E     L+ E+  +G L D L +   L    +  T + M L     + YL E
Sbjct: 66  VQLYGVCLEQAPICLVTEFMEHGCLSDYLRTQRGL---FAAETLLGMCLDVCEGMAYLEE 122
Query: 630 ICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
            C   ++HR+  + N        + VSD G+   +
Sbjct: 123 AC---VIHRDLAARNCLVGENQVIKVSDFGMTRFV 154

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 9/161 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           IG+G  G+VY+ +      +AVK L+  A + Q+   F   V  + + RH NI+   GY 
Sbjct: 16  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 73
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
               Q  ++ ++C   +L   LH    ++        I +A   A+ ++YLH      I+
Sbjct: 74  TA-PQLAIVTQWCEGSSLYHHLHI---IETKFEMIKLIDIARQTAQGMDYLHA---KSII 126
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQVSHNLT 677
           HR+ KS NI       V + D GLA + S  S S     L+
Sbjct: 127 HRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLS 167

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 9/145 (6%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           IG+G  G+VY+ +      +AVK L+  A + Q+   F   V  + + RH NI+   GY 
Sbjct: 16  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 73
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +  Q  ++ ++C   +L   LH    ++        I +A   A+ ++YLH      I+
Sbjct: 74  TK-PQLAIVTQWCEGSSLYHHLHI---IETKFEMIKLIDIARQTAQGMDYLHA---KSII 126
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLA 661
           HR+ KS NI       V + D GLA
Sbjct: 127 HRDLKSNNIFLHEDLTVKIGDFGLA 151

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 12/158 (7%)
Query: 512 SQENLIGAGMLGSVYRAQLP--DGKL---LAVKKLDKRASSQQKDDEFLELVNNIDRIRH 566
           +++ +IGAG  G VY+  L    GK    +A+K L    + +Q+ D FL     + +  H
Sbjct: 47  TRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVD-FLGEAGIMGQFSH 105
Query: 567 ANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEY 626
            NI+ L+G  +++   ++I EY  NG L   L   D      S    + M  G A  ++Y
Sbjct: 106 HNIIRLEGVISKYKPMMIITEYMENGALDKFLREKD---GEFSVLQLVGMLRGIAAGMKY 162
Query: 627 LHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           L  +     VHR+  + NI         VSD GL+ ++
Sbjct: 163 LANMN---YVHRDLAARNILVNSNLVCKVSDFGLSRVL 197

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 9/145 (6%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           IG+G  G+VY+ +      +AVK L+  A + Q+   F   V  + + RH NI+   GY 
Sbjct: 36  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 93
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +  Q  ++ ++C   +L   LH    ++        I +A   A+ ++YLH      I+
Sbjct: 94  TK-PQLAIVTQWCEGSSLYHHLHI---IETKFEMIKLIDIARQTAQGMDYLHA---KSII 146
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLA 661
           HR+ KS NI       V + D GLA
Sbjct: 147 HRDLKSNNIFLHEDLTVKIGDFGLA 171

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 9/145 (6%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           IG+G  G+VY+ +      +AVK L+  A + Q+   F   V  + + RH NI+   GY 
Sbjct: 44  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 101
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +  Q  ++ ++C   +L   LH    ++        I +A   A+ ++YLH      I+
Sbjct: 102 TK-PQLAIVTQWCEGSSLYHHLHI---IETKFEMIKLIDIARQTAQGMDYLHA---KSII 154
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLA 661
           HR+ KS NI       V + D GLA
Sbjct: 155 HRDLKSNNIFLHEDLTVKIGDFGLA 179

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 11/155 (7%)
Query: 510 SFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
           +F QE  IG+G  G V+     +   +A+K + + A S++   +F+E    + ++ H  +
Sbjct: 10  TFVQE--IGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEE---DFIEEAEVMMKLSHPKL 64
Query: 570 VELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
           V+L G C E     L++E+  +G L D L +   L    +  T + M L     + YL E
Sbjct: 65  VQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGL---FAAETLLGMCLDVCEGMAYLEE 121
Query: 630 ICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
                ++HR+  + N        + VSD G+   +
Sbjct: 122 ---ASVIHRDLAARNCLVGENQVIKVSDFGMTRFV 153

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 86/192 (44%), Gaps = 26/192 (13%)
Query: 493 FTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKL---DKRASSQ 548
           F  +R  T+A      N    E  IG G  G V++ +L  D  ++A+K L   D    ++
Sbjct: 8   FPKSRLPTLAD-----NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETE 62
Query: 549 --QKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKN 606
             +K  EF   V  +  + H NIV+L G    H    ++ E+   G   D+ H   +  +
Sbjct: 63  MIEKFQEFQREVFIMSNLNHPNIVKLYGLM--HNPPRMVMEFVPCG---DLYHRLLDKAH 117
Query: 607 NLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXX-----XAVSVSDCGLA 661
            + W+ ++R+ L  A  +EY+     PPIVHR+ +S NI              V+D GL 
Sbjct: 118 PIKWSVKLRLMLDIALGIEYMQN-QNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGL- 175
Query: 662 PLISSGSVSQVS 673
              S  SV  VS
Sbjct: 176 ---SQQSVHSVS 184

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 17/159 (10%)
Query: 493 FTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKL---DKRASSQ 548
           F  +R  T+A      N    E  IG G  G V++ +L  D  ++A+K L   D    ++
Sbjct: 8   FPKSRLPTLAD-----NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETE 62
Query: 549 --QKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKN 606
             +K  EF   V  +  + H NIV+L G    H    ++ E+   G   D+ H   +  +
Sbjct: 63  MIEKFQEFQREVFIMSNLNHPNIVKLYGLM--HNPPRMVMEFVPCG---DLYHRLLDKAH 117
Query: 607 NLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANI 645
            + W+ ++R+ L  A  +EY+     PPIVHR+ +S NI
Sbjct: 118 PIKWSVKLRLMLDIALGIEYMQN-QNPPIVHRDLRSPNI 155

>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 17/159 (10%)
Query: 493 FTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKL---DKRASSQ 548
           F  +R  T+A      N    E  IG G  G V++ +L  D  ++A+K L   D    ++
Sbjct: 8   FPKSRLPTLAD-----NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETE 62
Query: 549 --QKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKN 606
             +K  EF   V  +  + H NIV+L G    H    ++ E+   G   D+ H   +  +
Sbjct: 63  MIEKFQEFQREVFIMSNLNHPNIVKLYGLM--HNPPRMVMEFVPCG---DLYHRLLDKAH 117
Query: 607 NLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANI 645
            + W+ ++R+ L  A  +EY+     PPIVHR+ +S NI
Sbjct: 118 PIKWSVKLRLMLDIALGIEYMQN-QNPPIVHRDLRSPNI 155

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 11/159 (6%)
Query: 514 ENLIGAGMLGSVYRAQL--PDGK--LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
           E +IGAG  G V R +L  P  K   +A+K L K   ++++  EFL   + + +  H NI
Sbjct: 19  EEVIGAGEFGEVCRGRLKAPGKKESCVAIKTL-KGGYTERQRREFLSEASIMGQFEHPNI 77
Query: 570 VELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
           + L+G        +++ E+  NG L   L  +D      +    + M  G A  + YL E
Sbjct: 78  IRLEGVVTNSMPVMILTEFMENGALDSFLRLND---GQFTVIQLVGMLRGIASGMRYLAE 134
Query: 630 ICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGS 668
           +     VHR+  + NI         VSD GL+  +   S
Sbjct: 135 MS---YVHRDLAARNILVNSNLVCKVSDFGLSRFLEENS 170

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 11/159 (6%)
Query: 514 ENLIGAGMLGSVYRAQL--PDGK--LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
           E +IGAG  G V R +L  P  K   +A+K L K   ++++  EFL   + + +  H NI
Sbjct: 21  EEVIGAGEFGEVCRGRLKAPGKKESCVAIKTL-KGGYTERQRREFLSEASIMGQFEHPNI 79
Query: 570 VELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
           + L+G        +++ E+  NG L   L  +D      +    + M  G A  + YL E
Sbjct: 80  IRLEGVVTNSMPVMILTEFMENGALDSFLRLND---GQFTVIQLVGMLRGIASGMRYLAE 136
Query: 630 ICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGS 668
           +     VHR+  + NI         VSD GL+  +   S
Sbjct: 137 MS---YVHRDLAARNILVNSNLVCKVSDFGLSRFLEENS 172

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 9/154 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +GAG  G V+         +AVK L + + S    D FL   N + +++H  +V L    
Sbjct: 17  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMS---PDAFLAEANLMKQLQHQRLVRLYAVV 73
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +     +I EY  NG+L D L +   +K  L+ N  + MA   A  + ++ E      +
Sbjct: 74  TQE-PIYIITEYMENGSLVDFLKTPSGIK--LTINKLLDMAAQIAEGMAFIEE---RNYI 127
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVS 670
           HRN ++ANI      +  ++D GLA LI     +
Sbjct: 128 HRNLRAANILVSDTLSCKIADFGLARLIEDNEYT 161

>pdb|3MY0|A Chain A, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound To Ldn- 193189 Length = 305

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 78/165 (47%), Gaps = 26/165 (15%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLEL-VNNIDRIRHANIVELKGY 575
           +G G  G V+R  L  G+ +AVK      SS+ +   F E  + N   +RH NI+   G+
Sbjct: 16  VGKGRYGEVWRG-LWHGESVAVKIF----SSRDEQSWFRETEIYNTVLLRHDNIL---GF 67
Query: 576 CAE-------HGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
            A          Q  LI  Y  +G+L D L      +  L  +  +R+A+ AA  L +LH
Sbjct: 68  IASDMTSRNSSTQLWLITHYHEHGSLYDFLQ-----RQTLEPHLALRLAVSAACGLAHLH 122
Query: 629 -EIC----QPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGS 668
            EI     +P I HR+FKS N+         ++D GLA + S GS
Sbjct: 123 VEIFGTQGKPAIAHRDFKSRNVLVKSNLQCCIADLGLAVMHSQGS 167

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 11/160 (6%)
Query: 509 NSFSQENLIGAGMLGSVY--RAQLPDGKLL--AVKKLDKRASSQQKDDEFLELVNNIDRI 564
            + S + ++GAG  G V   R +LP  K +  A+K L    + +Q+ D FL   + + + 
Sbjct: 45  TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRD-FLGEASIMGQF 103
Query: 565 RHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARAL 624
            H NI+ L+G   +    +++ EY  NG+L   L   D      +    + M  G A  +
Sbjct: 104 DHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDA---QFTVIQLVGMLRGIASGM 160
Query: 625 EYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           +YL ++     VHR+  + NI         VSD GLA ++
Sbjct: 161 KYLSDMGY---VHRDLAARNILINSNLVCKVSDFGLARVL 197

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 9/154 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +GAG  G V+         +AVK L + + S    D FL   N + +++H  +V L    
Sbjct: 31  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMS---PDAFLAEANLMKQLQHQRLVRLYAVV 87
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +     +I EY  NG+L D L +   +K  L+ N  + MA   A  + ++ E      +
Sbjct: 88  TQE-PIYIITEYMENGSLVDFLKTPSGIK--LTINKLLDMAAQIAEGMAFIEERN---YI 141
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVS 670
           HR+ ++ANI      +  ++D GLA LI     +
Sbjct: 142 HRDLRAANILVSDTLSCKIADFGLARLIEDNEYT 175

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 9/149 (6%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +GAG  G V+         +AVK L + + S    D FL   N + +++H  +V L    
Sbjct: 29  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMS---PDAFLAEANLMKQLQHQRLVRLYAVV 85
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +     +I EY  NG+L D L +   +K  L+ N  + MA   A  + ++ E      +
Sbjct: 86  TQE-PIYIITEYMENGSLVDFLKTPSGIK--LTINKLLDMAAQIAEGMAFIEERN---YI 139
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
           HR+ ++ANI      +  ++D GLA LI 
Sbjct: 140 HRDLRAANILVSDTLSCKIADFGLARLIE 168

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 9/149 (6%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +GAG  G V+         +AVK L + + S    D FL   N + +++H  +V L    
Sbjct: 27  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMS---PDAFLAEANLMKQLQHQRLVRLYAVV 83
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +     +I EY  NG+L D L +   +K  L+ N  + MA   A  + ++ E      +
Sbjct: 84  TQEPI-YIITEYMENGSLVDFLKTPSGIK--LTINKLLDMAAQIAEGMAFIEERN---YI 137
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
           HR+ ++ANI      +  ++D GLA LI 
Sbjct: 138 HRDLRAANILVSDTLSCKIADFGLARLIE 166

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 9/149 (6%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +GAG  G V+         +AVK L + + S    D FL   N + +++H  +V L    
Sbjct: 30  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMS---PDAFLAEANLMKQLQHQRLVRLYAVV 86
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +     +I EY  NG+L D L +   +K  L+ N  + MA   A  + ++ E      +
Sbjct: 87  TQE-PIYIITEYMENGSLVDFLKTPSGIK--LTINKLLDMAAQIAEGMAFIEERN---YI 140
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
           HR+ ++ANI      +  ++D GLA LI 
Sbjct: 141 HRDLRAANILVSDTLSCKIADFGLARLIE 169

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 11/160 (6%)
Query: 509 NSFSQENLIGAGMLGSVY--RAQLPDGKLL--AVKKLDKRASSQQKDDEFLELVNNIDRI 564
            + S + ++GAG  G V   R +LP  K +  A+K L    + +Q+ D FL   + + + 
Sbjct: 45  TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRD-FLGEASIMGQF 103
Query: 565 RHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARAL 624
            H NI+ L+G   +    +++ EY  NG+L   L   D      +    + M  G A  +
Sbjct: 104 DHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDA---QFTVIQLVGMLRGIASGM 160
Query: 625 EYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           +YL ++     VHR+  + NI         VSD GL+ ++
Sbjct: 161 KYLSDMG---FVHRDLAARNILINSNLVCKVSDFGLSRVL 197

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 9/154 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +GAG  G V+         +AVK L + + S    D FL   N + +++H  +V L    
Sbjct: 27  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMS---PDAFLAEANLMKQLQHQRLVRLYAVV 83
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +     +I EY  NG+L D L +   +K  L+ N  + MA   A  + ++ E      +
Sbjct: 84  TQEPI-YIITEYMENGSLVDFLKTPSGIK--LTINKLLDMAAQIAEGMAFIEE---RNYI 137
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVS 670
           HR+ ++ANI      +  ++D GLA LI     +
Sbjct: 138 HRDLRAANILVSDTLSCKIADFGLARLIEDNEYT 171

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 9/154 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +GAG  G V+         +AVK L + + S    D FL   N + +++H  +V L    
Sbjct: 26  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMS---PDAFLAEANLMKQLQHQRLVRLYAVV 82
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +     +I EY  NG+L D L +   +K  L+ N  + MA   A  + ++ E      +
Sbjct: 83  TQEPI-YIITEYMENGSLVDFLKTPSGIK--LTINKLLDMAAQIAEGMAFIEE---RNYI 136
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVS 670
           HR+ ++ANI      +  ++D GLA LI     +
Sbjct: 137 HRDLRAANILVSDTLSCKIADFGLARLIEDNEYT 170

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 9/149 (6%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +GAG  G V+         +AVK L + + S    D FL   N + +++H  +V L    
Sbjct: 21  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMS---PDAFLAEANLMKQLQHQRLVRLYAVV 77
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +     +I EY  NG+L D L +   +K  L+ N  + MA   A  + ++ E      +
Sbjct: 78  TQE-PIYIITEYMENGSLVDFLKTPSGIK--LTINKLLDMAAQIAEGMAFIEERN---YI 131
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
           HR+ ++ANI      +  ++D GLA LI 
Sbjct: 132 HRDLRAANILVSDTLSCKIADFGLARLIE 160

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 19/154 (12%)
Query: 514 ENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELK 573
           E ++G G  G V +A+    K +A+K+++    S+ +   F+  +  + R+ H NIV+L 
Sbjct: 14  EEVVGRGAFGVVCKAKW-RAKDVAIKQIE----SESERKAFIVELRQLSRVNHPNIVKLY 68
Query: 574 GYCAEHGQRLLIYEYCSNGTLQDMLHSDDEL-----KNNLSWNTRIRMALGAARALEYLH 628
           G C       L+ EY   G+L ++LH  + L      + +SW       L  ++ + YLH
Sbjct: 69  GACL--NPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSW------CLQCSQGVAYLH 120
Query: 629 EICQPPIVHRNFKSANIXXXXXXAV-SVSDCGLA 661
            +    ++HR+ K  N+       V  + D G A
Sbjct: 121 SMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTA 154

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 9/155 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKL-LAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           +G G  G VY        L +AVK L +      + +EFL+    +  I+H N+V+L G 
Sbjct: 228 LGGGQYGEVYEGVWKKYSLTVAVKTLKE---DTMEVEEFLKEAAVMKEIKHPNLVQLLGV 284
Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
           C       +I E+ + G L D L   +  +  +S    + MA   + A+EYL    +   
Sbjct: 285 CTREPPFYIITEFMTYGNLLDYLRECN--RQEVSAVVLLYMATQISSAMEYLE---KKNF 339
Query: 636 VHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVS 670
           +HRN  + N        V V+D GL+ L++  + +
Sbjct: 340 IHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYT 374

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 9/154 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +GAG  G V+         +AVK L + + S    D FL   N + +++H  +V L    
Sbjct: 16  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSP---DAFLAEANLMKQLQHQRLVRLYAVV 72
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +     +I EY  NG+L D L +   +K  L+ N  + MA   A  + ++ E      +
Sbjct: 73  TQE-PIYIITEYMENGSLVDFLKTPSGIK--LTINKLLDMAAQIAEGMAFIEE---RNYI 126
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVS 670
           HR+ ++ANI      +  ++D GLA LI     +
Sbjct: 127 HRDLRAANILVSDTLSCKIADFGLARLIEDNEYT 160

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 9/149 (6%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +GAG  G V+         +AVK L + + S    D FL   N + +++H  +V L    
Sbjct: 23  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMS---PDAFLAEANLMKQLQHQRLVRLYAVV 79
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +     +I EY  NG+L D L +   +K  L+ N  + MA   A  + ++ E      +
Sbjct: 80  TQEPI-YIITEYMENGSLVDFLKTPSGIK--LTINKLLDMAAQIAEGMAFIEE---RNYI 133
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
           HR+ ++ANI      +  ++D GLA LI 
Sbjct: 134 HRDLRAANILVSDTLSCKIADFGLARLIE 162

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 9/154 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +GAG  G V+         +AVK L + + S    D FL   N + +++H  +V L    
Sbjct: 21  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMS---PDAFLAEANLMKQLQHQRLVRLYAVV 77
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +     +I EY  NG+L D L +   +K  L+ N  + MA   A  + ++ E      +
Sbjct: 78  TQE-PIYIITEYMENGSLVDFLKTPSGIK--LTINKLLDMAAQIAEGMAFIEE---RNYI 131
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVS 670
           HR+ ++ANI      +  ++D GLA LI     +
Sbjct: 132 HRDLRAANILVSDTLSCKIADFGLARLIEDNEYT 165

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 9/149 (6%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +GAG  G V+         +AVK L + + S    D FL   N + +++H  +V L    
Sbjct: 22  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMS---PDAFLAEANLMKQLQHQRLVRLYAVV 78
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +     +I EY  NG+L D L +   +K  L+ N  + MA   A  + ++ E      +
Sbjct: 79  TQE-PIYIITEYMENGSLVDFLKTPSGIK--LTINKLLDMAAQIAEGMAFIEE---RNYI 132
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
           HR+ ++ANI      +  ++D GLA LI 
Sbjct: 133 HRDLRAANILVSDTLSCKIADFGLARLIE 161

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 9/155 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           IG+G  G+VY+ +      +AVK L     + ++   F   V  + + RH NI+   GY 
Sbjct: 44  IGSGSFGTVYKGKWHGD--VAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYM 101
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +     ++ ++C   +L   LH  +           I +A   A+ ++YLH      I+
Sbjct: 102 TK-DNLAIVTQWCEGSSLYKHLHVQE---TKFQMFQLIDIARQTAQGMDYLHA---KNII 154
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQ 671
           HR+ KS NI       V + D GLA + S  S SQ
Sbjct: 155 HRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQ 189

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 11/155 (7%)
Query: 514 ENLIGAGMLGSVYRAQLP-DGK---LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
           E +IGAG  G V    L   GK    +A+K L    + +Q+ D FL   + + +  H N+
Sbjct: 38  EQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRD-FLSEASIMGQFDHPNV 96
Query: 570 VELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
           + L+G   +    ++I E+  NG+L   L  +D      +    + M  G A  ++YL +
Sbjct: 97  IHLEGVVTKSTPVMIITEFMENGSLDSFLRQND---GQFTVIQLVGMLRGIAAGMKYLAD 153
Query: 630 ICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           +     VHR+  + NI         VSD GL+  +
Sbjct: 154 MN---YVHRDLAARNILVNSNLVCKVSDFGLSRFL 185

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 9/149 (6%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +GAG  G V+         +AVK L + + S    D FL   N + +++H  +V L    
Sbjct: 21  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMS---PDAFLAEANLMKQLQHQRLVRLYAVV 77
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +     +I EY  NG+L D L +   +K  L+ N  + MA   A  + ++ E      +
Sbjct: 78  TQE-PIYIITEYMENGSLVDFLKTPSGIK--LTINKLLDMAAQIAEGMAFIEE---RNYI 131
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
           HR+ ++ANI      +  ++D GLA LI 
Sbjct: 132 HRDLRAANILVSDTLSCKIADFGLARLIE 160

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 11/160 (6%)
Query: 509 NSFSQENLIGAGMLGSVY--RAQLPDGKLL--AVKKLDKRASSQQKDDEFLELVNNIDRI 564
            + S + ++GAG  G V   R +LP  K +  A+K L    + +Q+ D FL   + + + 
Sbjct: 45  TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRD-FLGEASIMGQF 103
Query: 565 RHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARAL 624
            H NI+ L+G   +    +++ EY  NG+L   L   D      +    + M  G A  +
Sbjct: 104 DHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDA---QFTVIQLVGMLRGIASGM 160
Query: 625 EYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           +YL ++     VHR+  + NI         VSD GL+ ++
Sbjct: 161 KYLSDMGY---VHRDLAARNILINSNLVCKVSDFGLSRVL 197

>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5) Length = 295

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 11/155 (7%)
Query: 514 ENLIGAGMLGSVY--RAQLPDGKLL--AVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
           E +IGAG  G V   R +LP  + L  A+K L    + +Q+ D FL   + + +  H NI
Sbjct: 27  ERVIGAGEFGEVCSGRLKLPGKRELPVAIKTLKVGYTEKQRRD-FLGEASIMGQFDHPNI 85
Query: 570 VELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
           + L+G   +    +++ EY  NG+L   L  +D      +    + M  G +  ++YL +
Sbjct: 86  IHLEGVVTKSKPVMIVTEYMENGSLDTFLKKND---GQFTVIQLVGMLRGISAGMKYLSD 142
Query: 630 ICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           +     VHR+  + NI         VSD GL+ ++
Sbjct: 143 MGY---VHRDLAARNILINSNLVCKVSDFGLSRVL 174

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 11/160 (6%)
Query: 509 NSFSQENLIGAGMLGSVY--RAQLPDGKLL--AVKKLDKRASSQQKDDEFLELVNNIDRI 564
            + S + ++GAG  G V   R +LP  K +  A+K L    + +Q+ D FL   + + + 
Sbjct: 33  TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRD-FLGEASIMGQF 91
Query: 565 RHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARAL 624
            H NI+ L+G   +    +++ EY  NG+L   L   D      +    + M  G A  +
Sbjct: 92  DHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDA---QFTVIQLVGMLRGIASGM 148
Query: 625 EYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           +YL ++     VHR+  + NI         VSD GL+ ++
Sbjct: 149 KYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVL 185

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 11/160 (6%)
Query: 509 NSFSQENLIGAGMLGSVY--RAQLPDGKLL--AVKKLDKRASSQQKDDEFLELVNNIDRI 564
            + S + ++GAG  G V   R +LP  K +  A+K L    + +Q+ D FL   + + + 
Sbjct: 16  TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRD-FLGEASIMGQF 74
Query: 565 RHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARAL 624
            H NI+ L+G   +    +++ EY  NG+L   L   D      +    + M  G A  +
Sbjct: 75  DHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDA---QFTVIQLVGMLRGIASGM 131
Query: 625 EYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           +YL ++     VHR+  + NI         VSD GL+ ++
Sbjct: 132 KYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVL 168

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 11/160 (6%)
Query: 509 NSFSQENLIGAGMLGSVY--RAQLPDGKLL--AVKKLDKRASSQQKDDEFLELVNNIDRI 564
            + S + ++GAG  G V   R +LP  K +  A+K L    + +Q+ D FL   + + + 
Sbjct: 45  TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRD-FLGEASIMGQF 103
Query: 565 RHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARAL 624
            H NI+ L+G   +    +++ EY  NG+L   L   D      +    + M  G A  +
Sbjct: 104 DHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDA---QFTVIQLVGMLRGIASGM 160
Query: 625 EYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           +YL ++     VHR+  + NI         VSD GL+ ++
Sbjct: 161 KYLSDMGY---VHRDLAARNILINSNLVCKVSDFGLSRVL 197

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 11/160 (6%)
Query: 509 NSFSQENLIGAGMLGSVY--RAQLPDGKLL--AVKKLDKRASSQQKDDEFLELVNNIDRI 564
            + S + ++GAG  G V   R +LP  K +  A+K L    + +Q+ D FL   + + + 
Sbjct: 45  TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRD-FLGEASIMGQF 103
Query: 565 RHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARAL 624
            H NI+ L+G   +    +++ EY  NG+L   L   D      +    + M  G A  +
Sbjct: 104 DHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDA---QFTVIQLVGMLRGIASGM 160
Query: 625 EYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           +YL ++     VHR+  + NI         VSD GL+ ++
Sbjct: 161 KYLSDMGY---VHRDLAARNILINSNLVCKVSDFGLSRVL 197

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 19/154 (12%)
Query: 514 ENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELK 573
           E ++G G  G V +A+    K +A+K+++    S+ +   F+  +  + R+ H NIV+L 
Sbjct: 13  EEVVGRGAFGVVCKAKW-RAKDVAIKQIE----SESERKAFIVELRQLSRVNHPNIVKLY 67
Query: 574 GYCAEHGQRLLIYEYCSNGTLQDMLHSDDEL-----KNNLSWNTRIRMALGAARALEYLH 628
           G C       L+ EY   G+L ++LH  + L      + +SW       L  ++ + YLH
Sbjct: 68  GACL--NPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSW------CLQCSQGVAYLH 119
Query: 629 EICQPPIVHRNFKSANIXXXXXXAV-SVSDCGLA 661
            +    ++HR+ K  N+       V  + D G A
Sbjct: 120 SMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTA 153

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 11/160 (6%)
Query: 509 NSFSQENLIGAGMLGSVY--RAQLPDGKLL--AVKKLDKRASSQQKDDEFLELVNNIDRI 564
            + S + ++GAG  G V   R +LP  K +  A+K L    + +Q+ D FL   + + + 
Sbjct: 45  TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRD-FLGEASIMGQF 103
Query: 565 RHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARAL 624
            H NI+ L+G   +    +++ EY  NG+L   L   D      +    + M  G A  +
Sbjct: 104 DHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDA---QFTVIQLVGMLRGIASGM 160
Query: 625 EYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           +YL ++     VHR+  + NI         VSD GL  ++
Sbjct: 161 KYLSDMGY---VHRDLAARNILINSNLVCKVSDFGLGRVL 197

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 11/160 (6%)
Query: 509 NSFSQENLIGAGMLGSVY--RAQLPDGKLL--AVKKLDKRASSQQKDDEFLELVNNIDRI 564
            + S + ++GAG  G V   R +LP  K +  A+K L    + +Q+ D FL   + + + 
Sbjct: 43  TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRD-FLGEASIMGQF 101
Query: 565 RHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARAL 624
            H NI+ L+G   +    +++ EY  NG+L   L   D      +    + M  G A  +
Sbjct: 102 DHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDA---QFTVIQLVGMLRGIASGM 158
Query: 625 EYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           +YL ++     VHR+  + NI         VSD GL+ ++
Sbjct: 159 KYLSDMGY---VHRDLAARNILINSNLVCKVSDFGLSRVL 195

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 11/160 (6%)
Query: 509 NSFSQENLIGAGMLGSVY--RAQLPDGKLL--AVKKLDKRASSQQKDDEFLELVNNIDRI 564
            + S + ++GAG  G V   R +LP  K +  A+K L    + +Q+ D FL   + + + 
Sbjct: 45  TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRD-FLGEASIMGQF 103
Query: 565 RHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARAL 624
            H NI+ L+G   +    +++ EY  NG+L   L   D      +    + M  G A  +
Sbjct: 104 DHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDA---QFTVIQLVGMLRGIASGM 160
Query: 625 EYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           +YL ++     VHR+  + NI         VSD GL+ ++
Sbjct: 161 KYLSDMGY---VHRDLAARNILINSNLVCKVSDFGLSRVL 197

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 68/168 (40%), Gaps = 18/168 (10%)
Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKL---LAVKKLDKRASSQQKDDEFLELVNNIDRIR 565
           N    +++IG G  G V +A++    L    A+K++ + AS     D   EL        
Sbjct: 22  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 81
Query: 566 HANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNN------------LSWNTR 613
           H NI+ L G C   G   L  EY  +G L D L     L+ +            LS    
Sbjct: 82  HPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQL 141
Query: 614 IRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
           +  A   AR ++YL    Q   +HRN  + NI         ++D GL+
Sbjct: 142 LHFAADVARGMDYL---SQKQFIHRNLAARNILVGENYVAKIADFGLS 186

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 9/154 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +GAG  G V+         +AVK L + + S    D FL   N + +++H  +V L    
Sbjct: 21  LGAGQAGEVWMGYYNGHTKVAVKSLKQGSMS---PDAFLAEANLMKQLQHQRLVRLYAVV 77
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +     +I EY  NG+L D L +   +K  L+ N  + MA   A  + ++ E      +
Sbjct: 78  TQE-PIYIITEYMENGSLVDFLKTPSGIK--LTINKLLDMAAQIAEGMAFIEERN---YI 131
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVS 670
           HR+ ++ANI      +  ++D GLA LI     +
Sbjct: 132 HRDLRAANILVSDTLSCKIADFGLARLIEDAEXT 165

>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 29/162 (17%)
Query: 517 IGAGMLGSVYRAQ---LPD--GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +G G  GSV   +   L D  G+++AVKKL        +D  F   +  +  ++H NIV+
Sbjct: 19  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRD--FEREIEILKSLQHDNIVK 76
Query: 572 LKGYCAEHGQR--LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
            KG C   G+R   LI EY   G+L+D L    E  +++             + L+Y  +
Sbjct: 77  YKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHI-------------KLLQYTSQ 123
Query: 630 ICQ-------PPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           IC+          +HRN  + NI       V + D GL  ++
Sbjct: 124 ICKGMEYLGTKRYIHRNLATRNILVENENRVKIGDFGLTKVL 165

>pdb|1RJB|A Chain A, Crystal Structure Of Flt3 Length = 344

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 81/195 (41%), Gaps = 33/195 (16%)
Query: 511 FSQENL-----IGAGMLGSVYRA------QLPDGKLLAVKKLDKRASSQQKDDEFLELVN 559
           F +ENL     +G+G  G V  A      +      +AVK L ++A S +++    EL  
Sbjct: 42  FPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKM 101
Query: 560 NIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLH------SDDELK-------- 605
                 H NIV L G C   G   LI+EYC  G L + L       S+DE++        
Sbjct: 102 MTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLE 161
Query: 606 -----NNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGL 660
                N L++   +  A   A+ +E+L        VHR+  + N+       V + D GL
Sbjct: 162 EEEDLNVLTFEDLLCFAYQVAKGMEFLE---FKSCVHRDLAARNVLVTHGKVVKICDFGL 218
Query: 661 APLISSGSVSQVSHN 675
           A  I S S   V  N
Sbjct: 219 ARDIMSDSNYVVRGN 233

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 9/184 (4%)
Query: 488 KTAKPFTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKL-LAVKKLDKRAS 546
           K  KP     S      +      + ++ +G G  G VY        L +AVK L +   
Sbjct: 238 KRNKPTVYGVSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE--- 294
Query: 547 SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKN 606
              + +EFL+    +  I+H N+V+L G C       +I E+ + G L D L   +  + 
Sbjct: 295 DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEV 354
Query: 607 NLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
           N      + MA   + A+EYL    +   +HRN  + N        V V+D GL+ L++ 
Sbjct: 355 NAV--VLLYMATQISSAMEYLE---KKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTG 409
Query: 667 GSVS 670
            + +
Sbjct: 410 DTYT 413

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 9/155 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKL-LAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           +G G  G VY        L +AVK L +      + +EFL+    +  I+H N+V+L G 
Sbjct: 19  LGGGQFGEVYEGVWKKYSLTVAVKTLKE---DTMEVEEFLKEAAVMKEIKHPNLVQLLGV 75
Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
           C       +I E+ + G L D L   +  +  +S    + MA   + A+EYL    +   
Sbjct: 76  CTREPPFYIITEFMTYGNLLDYLRECN--RQEVSAVVLLYMATQISSAMEYLE---KKNF 130
Query: 636 VHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVS 670
           +HR+  + N        V V+D GL+ L++  + +
Sbjct: 131 IHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXT 165

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 9/155 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKL-LAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           +G G  G VY        L +AVK L +      + +EFL+    +  I+H N+V+L G 
Sbjct: 19  LGGGQYGEVYEGVWKKYSLTVAVKTLKE---DTMEVEEFLKEAAVMKEIKHPNLVQLLGV 75
Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
           C       +I E+ + G L D L   +  +  +S    + MA   + A+EYL    +   
Sbjct: 76  CTREPPFYIITEFMTYGNLLDYLRECN--RQEVSAVVLLYMATQISSAMEYLE---KKNF 130
Query: 636 VHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVS 670
           +HR+  + N        V V+D GL+ L++  + +
Sbjct: 131 IHRDLAARNCLVGENHLVKVADFGLSRLMTGDTFT 165

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 9/155 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKL-LAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           +G G  G VY        L +AVK L +      + +EFL+    +  I+H N+V+L G 
Sbjct: 26  LGGGQYGEVYEGVWKKYSLTVAVKTLKE---DTMEVEEFLKEAAVMKEIKHPNLVQLLGV 82
Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
           C       +I E+ + G L D L   +  +  +S    + MA   + A+EYL    +   
Sbjct: 83  CTREPPFYIITEFMTYGNLLDYLRECN--RQEVSAVVLLYMATQISSAMEYLE---KKNF 137
Query: 636 VHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVS 670
           +HR+  + N        V V+D GL+ L++  + +
Sbjct: 138 IHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYT 172

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 9/155 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKL-LAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           +G G  G VY        L +AVK L +      + +EFL+    +  I+H N+V+L G 
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKE---DTMEVEEFLKEAAVMKEIKHPNLVQLLGV 77
Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
           C       +I E+ + G L D L   +  +  +S    + MA   + A+EYL    +   
Sbjct: 78  CTREPPFYIIIEFMTYGNLLDYLRECN--RQEVSAVVLLYMATQISSAMEYLE---KKNF 132
Query: 636 VHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVS 670
           +HR+  + N        V V+D GL+ L++  + +
Sbjct: 133 IHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYT 167

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 9/155 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKL-LAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           +G G  G VY        L +AVK L +      + +EFL+    +  I+H N+V+L G 
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKE---DTMEVEEFLKEAAVMKEIKHPNLVQLLGV 77
Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
           C       +I E+ + G L D L   +  +  +S    + MA   + A+EYL    +   
Sbjct: 78  CTREPPFYIIIEFMTYGNLLDYLRECN--RQEVSAVVLLYMATQISSAMEYLE---KKNF 132
Query: 636 VHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVS 670
           +HR+  + N        V V+D GL+ L++  + +
Sbjct: 133 IHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYT 167

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 9/155 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKL-LAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           +G G  G VY        L +AVK L +      + +EFL+    +  I+H N+V+L G 
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKE---DTMEVEEFLKEAAVMKEIKHPNLVQLLGV 77
Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
           C       +I E+ + G L D L   +  +  +S    + MA   + A+EYL    +   
Sbjct: 78  CTREPPFYIITEFMTYGNLLDYLRECN--RQEVSAVVLLYMATQISSAMEYLE---KKNF 132
Query: 636 VHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVS 670
           +HR+  + N        V V+D GL+ L++  + +
Sbjct: 133 IHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYT 167

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 9/155 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKL-LAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           +G G  G VY        L +AVK L +      + +EFL+    +  I+H N+V+L G 
Sbjct: 19  LGGGQYGEVYEGVWKKYSLTVAVKTLKE---DTMEVEEFLKEAAVMKEIKHPNLVQLLGV 75
Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
           C       +I E+ + G L D L   +  +  +S    + MA   + A+EYL    +   
Sbjct: 76  CTREPPFYIIIEFMTYGNLLDYLRECN--RQEVSAVVLLYMATQISSAMEYLE---KKNF 130
Query: 636 VHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVS 670
           +HR+  + N        V V+D GL+ L++  + +
Sbjct: 131 IHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXT 165

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 9/150 (6%)
Query: 516 LIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKG 574
           ++G G  G   +      G+++ +K+L +     Q+   FL+ V  +  + H N+++  G
Sbjct: 17  VLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRT--FLKEVKVMRCLEHPNVLKFIG 74
Query: 575 YCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPP 634
              +  +   I EY   GTL+ ++ S D   +   W+ R+  A   A  + YLH +    
Sbjct: 75  VLYKDKRLNFITEYIKGGTLRGIIKSMD---SQYPWSQRVSFAKDIASGMAYLHSM---N 128
Query: 635 IVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           I+HR+  S N        V V+D GLA L+
Sbjct: 129 IIHRDLNSHNCLVRENKNVVVADFGLARLM 158

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 9/155 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKL-LAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           +G G  G VY        L +AVK L +      + +EFL+    +  I+H N+V+L G 
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKE---DTMEVEEFLKEAAVMKEIKHPNLVQLLGV 77
Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
           C       +I E+ + G L D L   +  +  +S    + MA   + A+EYL    +   
Sbjct: 78  CTREPPFYIITEFMTYGNLLDYLRECN--RQEVSAVVLLYMATQISSAMEYLE---KKNF 132
Query: 636 VHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVS 670
           +HR+  + N        V V+D GL+ L++  + +
Sbjct: 133 IHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYT 167

>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation And Specifity Of A Ste20p Map3k Length = 348

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 78/158 (49%), Gaps = 11/158 (6%)
Query: 511 FSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHAN 568
           FS    IG G  G+VY A+ + + +++A+KK+      S +K  + ++ V  + ++RH N
Sbjct: 56  FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 115
Query: 569 IVELKG-YCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYL 627
            ++ +G Y  EH    L+ EYC  G+  D+L      K  L       +  GA + L YL
Sbjct: 116 TIQYRGCYLREHTA-WLVMEYCL-GSASDLLEVH---KKPLQEVEIAAVTHGALQGLAYL 170
Query: 628 HEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
           H      ++HR+ K+ NI       V + D G A +++
Sbjct: 171 H---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMA 205

>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +G G  G V   +      +A+K + + + S+   DEF+E    +  + H  +V+L G C
Sbjct: 32  LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSE---DEFIEEAKVMMNLSHEKLVQLYGVC 88
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +     +I EY +NG L + L    E+++       + M      A+EYL        +
Sbjct: 89  TKQRPIFIITEYMANGCLLNYLR---EMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFL 142
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           HR+  + N        V VSD GL+  +
Sbjct: 143 HRDLAARNCLVNDQGVVKVSDFGLSRYV 170

>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 11/155 (7%)
Query: 514 ENLIGAGMLGSVYRAQLP-DGK---LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
           E +IGAG  G V    L   GK    +A+K L    + +Q+ D FL   + + +  H N+
Sbjct: 12  EQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRD-FLSEASIMGQFDHPNV 70
Query: 570 VELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
           + L+G   +    ++I E+  NG+L   L  +D      +    + M  G A  ++YL +
Sbjct: 71  IHLEGVVTKSTPVMIITEFMENGSLDSFLRQND---GQFTVIQLVGMLRGIAAGMKYLAD 127
Query: 630 ICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           +     VHR   + NI         VSD GL+  +
Sbjct: 128 M---NYVHRALAARNILVNSNLVCKVSDFGLSRFL 159

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 9/155 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKL-LAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           +G G  G VY        L +AVK L +      + +EFL+    +  I+H N+V+L G 
Sbjct: 26  LGGGQYGEVYEGVWKKYSLTVAVKTLKE---DTMEVEEFLKEAAVMKEIKHPNLVQLLGV 82
Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
           C       +I E+ + G L D L   +  + N      + MA   + A+EYL    +   
Sbjct: 83  CTREPPFYIIIEFMTYGNLLDYLRECNRQEVNAV--VLLYMATQISSAMEYLE---KKNF 137
Query: 636 VHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVS 670
           +HR+  + N        V V+D GL+ L++  + +
Sbjct: 138 IHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYT 172

>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +G G  G V   +      +A+K + + + S+   DEF+E    +  + H  +V+L G C
Sbjct: 32  LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSE---DEFIEEAKVMMNLSHEKLVQLYGVC 88
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +     +I EY +NG L + L    E+++       + M      A+EYL        +
Sbjct: 89  TKQRPIFIITEYMANGCLLNYLR---EMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFL 142
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           HR+  + N        V VSD GL+  +
Sbjct: 143 HRDLAARNCLVNDQGVVKVSDFGLSRYV 170

>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +G G  G V   +      +A+K + + + S+   DEF+E    +  + H  +V+L G C
Sbjct: 16  LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSE---DEFIEEAKVMMNLSHEKLVQLYGVC 72
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +     +I EY +NG L + L    E+++       + M      A+EYL        +
Sbjct: 73  TKQRPIFIITEYMANGCLLNYLR---EMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFL 126
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           HR+  + N        V VSD GL+  +
Sbjct: 127 HRDLAARNCLVNDQGVVKVSDFGLSRYV 154

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 9/155 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKL-LAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           +G G  G VY        L +AVK L +      + +EFL+    +  I+H N+V+L G 
Sbjct: 26  LGGGQYGEVYEGVWKKYSLTVAVKTLKE---DTMEVEEFLKEAAVMKEIKHPNLVQLLGV 82
Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
           C       +I E+ + G L D L   +  + N      + MA   + A+EYL    +   
Sbjct: 83  CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAV--VLLYMATQISSAMEYLE---KKNF 137
Query: 636 VHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVS 670
           +HR+  + N        V V+D GL+ L++  + +
Sbjct: 138 IHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYT 172

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 29/162 (17%)
Query: 517 IGAGMLGSVYRAQ---LPD--GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +G G  GSV   +   L D  G+++AVKKL        +D  F   +  +  ++H NIV+
Sbjct: 49  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRD--FEREIEILKSLQHDNIVK 106
Query: 572 LKGYCAEHGQR--LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
            KG C   G+R   LI EY   G+L+D L    E  +++             + L+Y  +
Sbjct: 107 YKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHI-------------KLLQYTSQ 153
Query: 630 ICQ-------PPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           IC+          +HR+  + NI       V + D GL  ++
Sbjct: 154 ICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVL 195

>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +G G  G V   +      +A+K + + + S+   DEF+E    +  + H  +V+L G C
Sbjct: 23  LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSE---DEFIEEAKVMMNLSHEKLVQLYGVC 79
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +     +I EY +NG L + L    E+++       + M      A+EYL        +
Sbjct: 80  TKQRPIFIITEYMANGCLLNYLR---EMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFL 133
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           HR+  + N        V VSD GL+  +
Sbjct: 134 HRDLAARNCLVNDQGVVKVSDFGLSRYV 161

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 9/155 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKL-LAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           +G G  G VY        L +AVK L +      + +EFL+    +  I+H N+V+L G 
Sbjct: 25  LGGGQYGEVYEGVWKKYSLTVAVKTLKE---DTMEVEEFLKEAAVMKEIKHPNLVQLLGV 81
Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
           C       +I E+ + G L D L   +  + N      + MA   + A+EYL    +   
Sbjct: 82  CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAV--VLLYMATQISSAMEYLE---KKNF 136
Query: 636 VHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVS 670
           +HR+  + N        V V+D GL+ L++  + +
Sbjct: 137 IHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYT 171

>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +G G  G V   +      +A+K + + + S+   DEF+E    +  + H  +V+L G C
Sbjct: 17  LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSE---DEFIEEAKVMMNLSHEKLVQLYGVC 73
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +     +I EY +NG L + L    E+++       + M      A+EYL        +
Sbjct: 74  TKQRPIFIITEYMANGCLLNYLR---EMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFL 127
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           HR+  + N        V VSD GL+  +
Sbjct: 128 HRDLAARNCLVNDQGVVKVSDFGLSRYV 155

>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +G G  G V   +      +A+K + + + S+   DEF+E    +  + H  +V+L G C
Sbjct: 12  LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSE---DEFIEEAKVMMNLSHEKLVQLYGVC 68
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +     +I EY +NG L + L    E+++       + M      A+EYL        +
Sbjct: 69  TKQRPIFIITEYMANGCLLNYLR---EMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFL 122
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           HR+  + N        V VSD GL+  +
Sbjct: 123 HRDLAARNCLVNDQGVVKVSDFGLSRYV 150

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 68/168 (40%), Gaps = 18/168 (10%)
Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKL---LAVKKLDKRASSQQKDDEFLELVNNIDRIR 565
           N    +++IG G  G V +A++    L    A+K++ + AS     D   EL        
Sbjct: 25  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 84
Query: 566 HANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNN------------LSWNTR 613
           H NI+ L G C   G   L  EY  +G L D L     L+ +            LS    
Sbjct: 85  HPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQL 144
Query: 614 IRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
           +  A   AR ++YL    Q   +HR+  + NI         ++D GL+
Sbjct: 145 LHFAADVARGMDYL---SQKQFIHRDLAARNILVGENYVAKIADFGLS 189

>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 20/184 (10%)
Query: 494 TTARSFTIASLQQYTNSFSQE---------NLIGAGMLGSVY--RAQLPDGK--LLAVKK 540
           T    FT     Q    F++E          +IG G  G V   R ++P  +   +A+K 
Sbjct: 5   TFVDPFTFEDPNQAVREFAKEIDASCIKIEKVIGVGEFGEVCSGRLKVPGKREICVAIKT 64
Query: 541 LDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHS 600
           L    + +Q+ D FL   + + +  H NI+ L+G   +    ++I EY  NG+L   L  
Sbjct: 65  LKAGYTDKQRRD-FLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLRK 123
Query: 601 DDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGL 660
           +D      +    + M  G    ++YL ++     VHR+  + NI         VSD G+
Sbjct: 124 ND---GRFTVIQLVGMLRGIGSGMKYLSDMSA---VHRDLAARNILVNSNLVCKVSDFGM 177
Query: 661 APLI 664
           + ++
Sbjct: 178 SRVL 181

>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure Length = 309

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 78/158 (49%), Gaps = 11/158 (6%)
Query: 511 FSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHAN 568
           FS    IG G  G+VY A+ + + +++A+KK+      S +K  + ++ V  + ++RH N
Sbjct: 17  FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 76
Query: 569 IVELKG-YCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYL 627
            ++ +G Y  EH    L+ EYC  G+  D+L      K  L       +  GA + L YL
Sbjct: 77  TIQYRGCYLREHTA-WLVMEYCL-GSASDLLEVH---KKPLQEVEIAAVTHGALQGLAYL 131
Query: 628 HEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
           H      ++HR+ K+ NI       V + D G A +++
Sbjct: 132 H---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMA 166

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 68/168 (40%), Gaps = 18/168 (10%)
Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKL---LAVKKLDKRASSQQKDDEFLELVNNIDRIR 565
           N    +++IG G  G V +A++    L    A+K++ + AS     D   EL        
Sbjct: 15  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 74
Query: 566 HANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNN------------LSWNTR 613
           H NI+ L G C   G   L  EY  +G L D L     L+ +            LS    
Sbjct: 75  HPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQL 134
Query: 614 IRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
           +  A   AR ++YL    Q   +HR+  + NI         ++D GL+
Sbjct: 135 LHFAADVARGMDYL---SQKQFIHRDLAARNILVGENYVAKIADFGLS 179

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 29/162 (17%)
Query: 517 IGAGMLGSVYRAQ---LPD--GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +G G  GSV   +   L D  G+++AVKKL        +D  F   +  +  ++H NIV+
Sbjct: 25  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRD--FEREIEILKSLQHDNIVK 82
Query: 572 LKGYCAEHGQR--LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
            KG C   G+R   LI EY   G+L+D L    E  +++             + L+Y  +
Sbjct: 83  YKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHI-------------KLLQYTSQ 129
Query: 630 ICQ-------PPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           IC+          +HR+  + NI       V + D GL  ++
Sbjct: 130 ICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVL 171

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 9/155 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKL-LAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           +G G  G VY        L +AVK L +      + +EFL+    +  I+H N+V+L G 
Sbjct: 22  LGGGQYGEVYEGVWKKYSLTVAVKTLKE---DTMEVEEFLKEAAVMKEIKHPNLVQLLGV 78
Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
           C       +I E+ + G L D L   +  + N      + MA   + A+EYL    +   
Sbjct: 79  CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAV--VLLYMATQISSAMEYLE---KKNF 133
Query: 636 VHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVS 670
           +HR+  + N        V V+D GL+ L++  + +
Sbjct: 134 IHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYT 168

>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +G G  G V   +      +A+K + + + S+   DEF+E    +  + H  +V+L G C
Sbjct: 17  LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSE---DEFIEEAKVMMNLSHEKLVQLYGVC 73
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +     +I EY +NG L + L    E+++       + M      A+EYL        +
Sbjct: 74  TKQRPIFIITEYMANGCLLNYLR---EMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFL 127
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           HR+  + N        V VSD GL+  +
Sbjct: 128 HRDLAARNCLVNDQGVVKVSDFGLSRYV 155

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 9/155 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKL-LAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           +G G  G VY        L +AVK L +      + +EFL+    +  I+H N+V+L G 
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKE---DTMEVEEFLKEAAVMKEIKHPNLVQLLGV 77
Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
           C       +I E+ + G L D L   +  + N      + MA   + A+EYL    +   
Sbjct: 78  CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAV--VLLYMATQISSAMEYLE---KKNF 132
Query: 636 VHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVS 670
           +HR+  + N        V V+D GL+ L++  + +
Sbjct: 133 IHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYT 167

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 29/162 (17%)
Query: 517 IGAGMLGSVYRAQ---LPD--GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +G G  GSV   +   L D  G+++AVKKL        +D  F   +  +  ++H NIV+
Sbjct: 23  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRD--FEREIEILKSLQHDNIVK 80
Query: 572 LKGYCAEHGQR--LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
            KG C   G+R   LI EY   G+L+D L    E  +++             + L+Y  +
Sbjct: 81  YKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHI-------------KLLQYTSQ 127
Query: 630 ICQ-------PPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           IC+          +HR+  + NI       V + D GL  ++
Sbjct: 128 ICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVL 169

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 9/155 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKL-LAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           +G G  G VY        L +AVK L +      + +EFL+    +  I+H N+V+L G 
Sbjct: 26  LGGGQYGEVYEGVWKKYSLTVAVKTLKE---DTMEVEEFLKEAAVMKEIKHPNLVQLLGV 82
Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
           C       +I E+ + G L D L   +  + N      + MA   + A+EYL    +   
Sbjct: 83  CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAV--VLLYMATQISSAMEYLE---KKNF 137
Query: 636 VHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVS 670
           +HR+  + N        V V+D GL+ L++  + +
Sbjct: 138 IHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXT 172

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 29/162 (17%)
Query: 517 IGAGMLGSVYRAQ---LPD--GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +G G  GSV   +   L D  G+++AVKKL        +D  F   +  +  ++H NIV+
Sbjct: 21  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRD--FEREIEILKSLQHDNIVK 78
Query: 572 LKGYCAEHGQR--LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
            KG C   G+R   LI EY   G+L+D L    E  +++             + L+Y  +
Sbjct: 79  YKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHI-------------KLLQYTSQ 125
Query: 630 ICQ-------PPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           IC+          +HR+  + NI       V + D GL  ++
Sbjct: 126 ICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVL 167

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 9/155 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKL-LAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           +G G  G VY        L +AVK L +      + +EFL+    +  I+H N+V+L G 
Sbjct: 26  LGGGQYGEVYEGVWKKYSLTVAVKTLKE---DTMEVEEFLKEAAVMKEIKHPNLVQLLGV 82
Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
           C       +I E+ + G L D L   +  + N      + MA   + A+EYL    +   
Sbjct: 83  CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAV--VLLYMATQISSAMEYLE---KKNF 137
Query: 636 VHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVS 670
           +HR+  + N        V V+D GL+ L++  + +
Sbjct: 138 IHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYT 172

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 29/162 (17%)
Query: 517 IGAGMLGSVYRAQ---LPD--GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +G G  GSV   +   L D  G+++AVKKL        +D  F   +  +  ++H NIV+
Sbjct: 18  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRD--FEREIEILKSLQHDNIVK 75
Query: 572 LKGYCAEHGQR--LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
            KG C   G+R   LI EY   G+L+D L    E  +++             + L+Y  +
Sbjct: 76  YKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHI-------------KLLQYTSQ 122
Query: 630 ICQ-------PPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           IC+          +HR+  + NI       V + D GL  ++
Sbjct: 123 ICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVL 164

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 9/155 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKL-LAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           +G G  G VY        L +AVK L +      + +EFL+    +  I+H N+V+L G 
Sbjct: 23  LGGGQYGEVYEGVWKKYSLTVAVKTLKE---DTMEVEEFLKEAAVMKEIKHPNLVQLLGV 79
Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
           C       +I E+ + G L D L   +  + N      + MA   + A+EYL    +   
Sbjct: 80  CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAV--VLLYMATQISSAMEYLE---KKNF 134
Query: 636 VHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVS 670
           +HR+  + N        V V+D GL+ L++  + +
Sbjct: 135 IHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYT 169

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 29/162 (17%)
Query: 517 IGAGMLGSVYRAQ---LPD--GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +G G  GSV   +   L D  G+++AVKKL        +D  F   +  +  ++H NIV+
Sbjct: 24  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRD--FEREIEILKSLQHDNIVK 81
Query: 572 LKGYCAEHGQR--LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
            KG C   G+R   LI EY   G+L+D L    E  +++             + L+Y  +
Sbjct: 82  YKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHI-------------KLLQYTSQ 128
Query: 630 ICQ-------PPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           IC+          +HR+  + NI       V + D GL  ++
Sbjct: 129 ICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVL 170

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 29/162 (17%)
Query: 517 IGAGMLGSVYRAQ---LPD--GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +G G  GSV   +   L D  G+++AVKKL        +D  F   +  +  ++H NIV+
Sbjct: 36  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRD--FEREIEILKSLQHDNIVK 93
Query: 572 LKGYCAEHGQR--LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
            KG C   G+R   LI EY   G+L+D L    E  +++             + L+Y  +
Sbjct: 94  YKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHI-------------KLLQYTSQ 140
Query: 630 ICQ-------PPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           IC+          +HR+  + NI       V + D GL  ++
Sbjct: 141 ICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVL 182

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 9/155 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKL-LAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           +G G  G VY        L +AVK L +      + +EFL+    +  I+H N+V+L G 
Sbjct: 34  LGGGQYGEVYEGVWKKYSLTVAVKTLKE---DTMEVEEFLKEAAVMKEIKHPNLVQLLGV 90
Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
           C       +I E+ + G L D L   +  + N      + MA   + A+EYL    +   
Sbjct: 91  CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAV--VLLYMATQISSAMEYLE---KKNF 145
Query: 636 VHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVS 670
           +HR+  + N        V V+D GL+ L++  + +
Sbjct: 146 IHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYT 180

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 29/162 (17%)
Query: 517 IGAGMLGSVYRAQ---LPD--GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +G G  GSV   +   L D  G+++AVKKL        +D  F   +  +  ++H NIV+
Sbjct: 36  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRD--FEREIEILKSLQHDNIVK 93
Query: 572 LKGYCAEHGQR--LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
            KG C   G+R   LI EY   G+L+D L    E  +++             + L+Y  +
Sbjct: 94  YKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHI-------------KLLQYTSQ 140
Query: 630 ICQ-------PPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           IC+          +HR+  + NI       V + D GL  ++
Sbjct: 141 ICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVL 182

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 9/155 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKL-LAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           +G G  G VY        L +AVK L +      + +EFL+    +  I+H N+V+L G 
Sbjct: 23  LGGGQYGEVYEGVWKKYSLTVAVKTLKE---DTMEVEEFLKEAAVMKEIKHPNLVQLLGV 79
Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
           C       +I E+ + G L D L   +  + N      + MA   + A+EYL    +   
Sbjct: 80  CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAV--VLLYMATQISSAMEYLE---KKNF 134
Query: 636 VHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVS 670
           +HR+  + N        V V+D GL+ L++  + +
Sbjct: 135 IHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYT 169

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 29/162 (17%)
Query: 517 IGAGMLGSVYRAQ---LPD--GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +G G  GSV   +   L D  G+++AVKKL        +D  F   +  +  ++H NIV+
Sbjct: 18  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRD--FEREIEILKSLQHDNIVK 75
Query: 572 LKGYCAEHGQR--LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
            KG C   G+R   LI EY   G+L+D L    E  +++             + L+Y  +
Sbjct: 76  YKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHI-------------KLLQYTSQ 122
Query: 630 ICQ-------PPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           IC+          +HR+  + NI       V + D GL  ++
Sbjct: 123 ICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVL 164

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 9/155 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKL-LAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           +G G  G VY        L +AVK L +      + +EFL+    +  I+H N+V+L G 
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKE---DTMEVEEFLKEAAVMKEIKHPNLVQLLGV 77
Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
           C       +I E+ + G L D L   +  + N      + MA   + A+EYL    +   
Sbjct: 78  CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAV--VLLYMATQISSAMEYLE---KKNF 132
Query: 636 VHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVS 670
           +HR+  + N        V V+D GL+ L++  + +
Sbjct: 133 IHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYT 167

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 29/162 (17%)
Query: 517 IGAGMLGSVYRAQ---LPD--GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +G G  GSV   +   L D  G+++AVKKL        +D  F   +  +  ++H NIV+
Sbjct: 18  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRD--FEREIEILKSLQHDNIVK 75
Query: 572 LKGYCAEHGQR--LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
            KG C   G+R   LI EY   G+L+D L    E  +++             + L+Y  +
Sbjct: 76  YKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHI-------------KLLQYTSQ 122
Query: 630 ICQ-------PPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           IC+          +HR+  + NI       V + D GL  ++
Sbjct: 123 ICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVL 164

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 9/155 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKL-LAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           +G G  G VY        L +AVK L +      + +EFL+    +  I+H N+V+L G 
Sbjct: 22  LGGGQYGEVYEGVWKKYSLTVAVKTLKE---DTMEVEEFLKEAAVMKEIKHPNLVQLLGV 78
Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
           C       +I E+ + G L D L   +  + N      + MA   + A+EYL    +   
Sbjct: 79  CTREPPFYIIIEFMTYGNLLDYLRECNRQEVNAV--VLLYMATQISSAMEYLE---KKNF 133
Query: 636 VHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVS 670
           +HR+  + N        V V+D GL+ L++  + +
Sbjct: 134 IHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXT 168

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 9/155 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKL-LAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           +G G  G VY        L +AVK L +      + +EFL+    +  I+H N+V+L G 
Sbjct: 23  LGGGQYGEVYEGVWKKYSLTVAVKTLKE---DTMEVEEFLKEAAVMKEIKHPNLVQLLGV 79
Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
           C       +I E+ + G L D L   +  + N      + MA   + A+EYL    +   
Sbjct: 80  CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAV--VLLYMATQISSAMEYLE---KKNF 134
Query: 636 VHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVS 670
           +HR+  + N        V V+D GL+ L++  + +
Sbjct: 135 IHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYT 169

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 29/162 (17%)
Query: 517 IGAGMLGSVYRAQ---LPD--GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +G G  GSV   +   L D  G+++AVKKL        +D  F   +  +  ++H NIV+
Sbjct: 17  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRD--FEREIEILKSLQHDNIVK 74
Query: 572 LKGYCAEHGQR--LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
            KG C   G+R   LI EY   G+L+D L    E  +++             + L+Y  +
Sbjct: 75  YKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHI-------------KLLQYTSQ 121
Query: 630 ICQ-------PPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           IC+          +HR+  + NI       V + D GL  ++
Sbjct: 122 ICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVL 163

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 29/162 (17%)
Query: 517 IGAGMLGSVYRAQ---LPD--GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +G G  GSV   +   L D  G+++AVKKL        +D  F   +  +  ++H NIV+
Sbjct: 22  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRD--FEREIEILKSLQHDNIVK 79
Query: 572 LKGYCAEHGQR--LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
            KG C   G+R   LI EY   G+L+D L    E  +++             + L+Y  +
Sbjct: 80  YKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHI-------------KLLQYTSQ 126
Query: 630 ICQ-------PPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           IC+          +HR+  + NI       V + D GL  ++
Sbjct: 127 ICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVL 168

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 9/157 (5%)
Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
            S   E  +G G  G V+         +A+K L     S    + FL+    + ++RH  
Sbjct: 18  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS---PEAFLQEAQVMKKLRHEK 74
Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           +V+L    +E    ++I EY S G+L D L    E+   L     + MA   A  + Y+ 
Sbjct: 75  LVQLYAVVSEEPIYIVI-EYMSKGSLLDFLKG--EMGKYLRLPQLVDMAAQIASGMAYVE 131
Query: 629 EICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
            +     VHR+ ++ANI         V+D GLA LI 
Sbjct: 132 RM---NYVHRDLRAANILVGENLVCKVADFGLARLIE 165

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 29/162 (17%)
Query: 517 IGAGMLGSVYRAQ---LPD--GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +G G  GSV   +   L D  G+++AVKKL        +D  F   +  +  ++H NIV+
Sbjct: 16  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRD--FEREIEILKSLQHDNIVK 73
Query: 572 LKGYCAEHGQR--LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
            KG C   G+R   LI EY   G+L+D L    E  +++             + L+Y  +
Sbjct: 74  YKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHI-------------KLLQYTSQ 120
Query: 630 ICQ-------PPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           IC+          +HR+  + NI       V + D GL  ++
Sbjct: 121 ICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVL 162

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 8/154 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +GAG  G V+     +   +AVK L     S Q    FLE  N +  ++H  +V L    
Sbjct: 21  LGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQA---FLEEANLMKTLQHDKLVRLYAVV 77
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
                  +I EY + G+L D L SD+  K  L      ++   +A+  E +  I +   +
Sbjct: 78  TREEPIYIITEYMAKGSLLDFLKSDEGGKVLLP-----KLIDFSAQIAEGMAYIERKNYI 132
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVS 670
           HR+ ++AN+         ++D GLA +I     +
Sbjct: 133 HRDLRAANVLVSESLMCKIADFGLARVIEDNEYT 166

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 9/157 (5%)
Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
            S   E  +G G  G V+         +A+K L     S    + FL+    + ++RH  
Sbjct: 18  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS---PEAFLQEAQVMKKLRHEK 74
Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           +V+L    +E    ++I EY S G+L D L    E+   L     + MA   A  + Y+ 
Sbjct: 75  LVQLYAVVSEEPIYIVI-EYMSKGSLLDFLKG--EMGKYLRLPQLVDMAAQIASGMAYVE 131
Query: 629 EICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
            +     VHR+ ++ANI         V+D GLA LI 
Sbjct: 132 RM---NYVHRDLRAANILVGENLVCKVADFGLARLIE 165

>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a) Kinase Domain In Complex With Dorsomorphin Length = 322

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 28/170 (16%)
Query: 520 GMLGSVYRAQLPDGKLLAVKKL---DKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           G  G V++AQL + + +AVK     DK++   + +      V ++  ++H NI++  G  
Sbjct: 35  GRFGCVWKAQLLN-EYVAVKIFPIQDKQSWQNEYE------VYSLPGMKHENILQFIG-A 86
Query: 577 AEHGQRL-----LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEIC 631
            + G  +     LI  +   G+L D L +     N +SWN    +A   AR L YLHE  
Sbjct: 87  EKRGTSVDVDLWLITAFHEKGSLSDFLKA-----NVVSWNELCHIAETMARGLAYLHEDI 141
Query: 632 -------QPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQVSH 674
                  +P I HR+ KS N+         ++D GLA    +G  +  +H
Sbjct: 142 PGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTH 191

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 29/162 (17%)
Query: 517 IGAGMLGSVYRAQ---LPD--GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +G G  GSV   +   L D  G+++AVKKL        +D  F   +  +  ++H NIV+
Sbjct: 21  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRD--FEREIEILKSLQHDNIVK 78
Query: 572 LKGYCAEHGQR--LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
            KG C   G+R   LI EY   G+L+D L +  E  +++             + L+Y  +
Sbjct: 79  YKGVCYSAGRRNLKLIMEYLPYGSLRDYLQAHAERIDHI-------------KLLQYTSQ 125
Query: 630 ICQ-------PPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           IC+          +HR+  + NI       V + D GL  ++
Sbjct: 126 ICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVL 167

>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g Hyperactivating Mutant In Apo Form. Length = 303

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 17/167 (10%)
Query: 506 QYTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKL---DKRASSQQKDDEFLELVNNI 561
           +Y + F +  ++G G  G V +A+   D +  A+KK+   +++ S+   +   L  +N+ 
Sbjct: 3   RYASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQ 62
Query: 562 DRIRHA-------NIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRI 614
             +R+        N V+      +     +  EYC NGTL D++HS++    N   +   
Sbjct: 63  YVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENL---NQQRDEYW 119
Query: 615 RMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
           R+      AL Y+H      I+HR+ K  NI       V + D GLA
Sbjct: 120 RLFRQILEALSYIH---SQGIIHRDLKPMNIFIDESRNVKIGDFGLA 163

>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 11/155 (7%)
Query: 514 ENLIGAGMLGSVY--RAQLPDGK--LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
           E +IG G  G V   R ++P  +   +A+K L    + +Q+ D FL   + + +  H NI
Sbjct: 13  EKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRD-FLSEASIMGQFDHPNI 71
Query: 570 VELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
           + L+G   +    ++I EY  NG+L   L  +D      +    + M  G    ++YL +
Sbjct: 72  IHLEGVVTKCKPVMIITEYMENGSLDAFLRKND---GRFTVIQLVGMLRGIGSGMKYLSD 128
Query: 630 ICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           +     VHR+  + NI         VSD G++ ++
Sbjct: 129 M---SYVHRDLAARNILVNSNLVCKVSDFGMSRVL 160

>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 11/155 (7%)
Query: 514 ENLIGAGMLGSVY--RAQLPDGK--LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
           E +IG G  G V   R ++P  +   +A+K L    + +Q+ D FL   + + +  H NI
Sbjct: 19  EKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRD-FLSEASIMGQFDHPNI 77
Query: 570 VELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
           + L+G   +    ++I EY  NG+L   L  +D      +    + M  G    ++YL +
Sbjct: 78  IHLEGVVTKCKPVMIITEYMENGSLDAFLRKND---GRFTVIQLVGMLRGIGSGMKYLSD 134
Query: 630 ICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           +     VHR+  + NI         VSD G++ ++
Sbjct: 135 M---SYVHRDLAARNILVNSNLVCKVSDFGMSRVL 166

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 67/157 (42%), Gaps = 9/157 (5%)
Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
            S   E  +G G  G V+         +A+K L     S    + FL+    + +IRH  
Sbjct: 18  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS---PEAFLQEAQVMKKIRHEK 74
Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           +V+L    +E     ++ EY S G+L D L    E+   L     + MA   A  + Y+ 
Sbjct: 75  LVQLYAVVSEE-PIYIVTEYMSKGSLLDFLKG--EMGKYLRLPQLVDMAAQIASGMAYVE 131
Query: 629 EICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
            +     VHR+ ++ANI         V+D GLA LI 
Sbjct: 132 RM---NYVHRDLRAANILVGENLVCKVADFGLARLIE 165

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 72/155 (46%), Gaps = 19/155 (12%)
Query: 517 IGAGMLGSV----YRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVEL 572
           IG G  G V    YR     G  +AVK +   A++Q     FL   + + ++RH+N+V+L
Sbjct: 29  IGKGEFGDVMLGDYR-----GNKVAVKCIKNDATAQA----FLAEASVMTQLRHSNLVQL 79
Query: 573 KGYCAEH-GQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEIC 631
            G   E  G   ++ EY + G+L D L S    ++ L  +  ++ +L    A+EYL    
Sbjct: 80  LGVIVEEKGGLYIVTEYMAKGSLVDYLRSRG--RSVLGGDCLLKFSLDVCEAMEYLE--- 134
Query: 632 QPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
               VHR+  + N+         VSD GL    SS
Sbjct: 135 GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASS 169

>pdb|1X8B|A Chain A, Structure Of Human Wee1a Kinase: Kinase Domain Complexed With Inhibitor Pd0407824 Length = 289

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 506 QYTNSFSQENLIGAGMLGSVYR-AQLPDGKLLAVKKLDK-RASSQQKDDEFLELVNNIDR 563
           +YT  F +   IG+G  GSV++  +  DG + A+K+  K  A S  + +   E+  +   
Sbjct: 8   RYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVL 67
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
            +H+++V      AE    L+  EYC+ G+L D +  +  + +         + L   R 
Sbjct: 68  GQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRG 127
Query: 624 LEYLHEICQPPIVHRNFKSANI 645
           L Y+H +    +VH + K +NI
Sbjct: 128 LRYIHSMS---LVHMDIKPSNI 146

>pdb|3BI6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd352396 Length = 287

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 506 QYTNSFSQENLIGAGMLGSVYR-AQLPDGKLLAVKKLDK-RASSQQKDDEFLELVNNIDR 563
           +YT  F +   IG+G  GSV++  +  DG + A+K+  K  A S  + +   E+  +   
Sbjct: 6   RYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVL 65
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
            +H+++V      AE    L+  EYC+ G+L D +  +  + +         + L   R 
Sbjct: 66  GQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRG 125
Query: 624 LEYLHEICQPPIVHRNFKSANI 645
           L Y+H +    +VH + K +NI
Sbjct: 126 LRYIHSMS---LVHMDIKPSNI 144

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 72/155 (46%), Gaps = 19/155 (12%)
Query: 517 IGAGMLGSV----YRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVEL 572
           IG G  G V    YR     G  +AVK +   A++Q     FL   + + ++RH+N+V+L
Sbjct: 20  IGKGEFGDVMLGDYR-----GNKVAVKCIKNDATAQA----FLAEASVMTQLRHSNLVQL 70
Query: 573 KGYCAEH-GQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEIC 631
            G   E  G   ++ EY + G+L D L S    ++ L  +  ++ +L    A+EYL    
Sbjct: 71  LGVIVEEKGGLYIVTEYMAKGSLVDYLRSRG--RSVLGGDCLLKFSLDVCEAMEYLE--- 125
Query: 632 QPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
               VHR+  + N+         VSD GL    SS
Sbjct: 126 GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASS 160

>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7) Length = 318

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 514 ENLIGAGMLGSVY--RAQLPDGK--LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
           E +IGAG  G V   R +LP  +   +A+K L    + +Q+ D FL   + + +  H N+
Sbjct: 48  ERVIGAGEFGEVCSGRLKLPGKRDVAVAIKTLKVGYTEKQRRD-FLCEASIMGQFDHPNV 106
Query: 570 VELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
           V L+G        +++ E+  NG L   L   D      +    + M  G A  + YL +
Sbjct: 107 VHLEGVVTRGKPVMIVIEFMENGALDAFLRKHD---GQFTVIQLVGMLRGIAAGMRYLAD 163
Query: 630 ICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
           +     VHR+  + NI         VSD GL+ +I 
Sbjct: 164 M---GYVHRDLAARNILVNSNLVCKVSDFGLSRVIE 196

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 72/155 (46%), Gaps = 19/155 (12%)
Query: 517 IGAGMLGSV----YRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVEL 572
           IG G  G V    YR     G  +AVK +   A++Q     FL   + + ++RH+N+V+L
Sbjct: 201 IGKGEFGDVMLGDYR-----GNKVAVKCIKNDATAQA----FLAEASVMTQLRHSNLVQL 251
Query: 573 KGYCAEH-GQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEIC 631
            G   E  G   ++ EY + G+L D L S    ++ L  +  ++ +L    A+EYL    
Sbjct: 252 LGVIVEEKGGLYIVTEYMAKGSLVDYLRSRG--RSVLGGDCLLKFSLDVCEAMEYLE--- 306
Query: 632 QPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
               VHR+  + N+         VSD GL    SS
Sbjct: 307 GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASS 341

>pdb|2Z2W|A Chain A, Humand Wee1 Kinase Complexed With Inhibitor Pf0335770 Length = 285

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 506 QYTNSFSQENLIGAGMLGSVYR-AQLPDGKLLAVKKLDK-RASSQQKDDEFLELVNNIDR 563
           +YT  F +   IG+G  GSV++  +  DG + A+K+  K  A S  + +   E+  +   
Sbjct: 4   RYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVL 63
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
            +H+++V      AE    L+  EYC+ G+L D +  +  + +         + L   R 
Sbjct: 64  GQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRG 123
Query: 624 LEYLHEICQPPIVHRNFKSANI 645
           L Y+H +    +VH + K +NI
Sbjct: 124 LRYIHSMS---LVHMDIKPSNI 142

>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1) Length = 350

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 81/159 (50%), Gaps = 22/159 (13%)
Query: 517 IGAGMLG-SVYRAQLPDGKLLAVKKLD-KRASSQQKDDEFLELVNNIDRIRHANIVELKG 574
           IG G  G ++      DG+   +K+++  R SS+++++   E V  +  ++H NIV+ + 
Sbjct: 32  IGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRRE-VAVLANMKHPNIVQYRE 90
Query: 575 YCAEHGQRLLIYEYCSNGTL-------QDMLHSDDELKNNLSWNTRIRMALGAARALEYL 627
              E+G   ++ +YC  G L       + +L  +D++   L W  +I +      AL+++
Sbjct: 91  SFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQI---LDWFVQICL------ALKHV 141
Query: 628 HEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
           H+     I+HR+ KS NI       V + D G+A +++S
Sbjct: 142 HD---RKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNS 177

>pdb|2IN6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd311839 Length = 287

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 506 QYTNSFSQENLIGAGMLGSVYR-AQLPDGKLLAVKKLDK-RASSQQKDDEFLELVNNIDR 563
           +YT  F +   IG+G  GSV++  +  DG + A+K+  K  A S  + +   E+  +   
Sbjct: 6   RYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVL 65
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
            +H+++V      AE    L+  EYC+ G+L D +  +  + +         + L   R 
Sbjct: 66  GQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRG 125
Query: 624 LEYLHEICQPPIVHRNFKSANI 645
           L Y+H +    +VH + K +NI
Sbjct: 126 LRYIHSMS---LVHMDIKPSNI 144

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 72/155 (46%), Gaps = 19/155 (12%)
Query: 517 IGAGMLGSV----YRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVEL 572
           IG G  G V    YR     G  +AVK +   A++Q     FL   + + ++RH+N+V+L
Sbjct: 14  IGKGEFGDVMLGDYR-----GNKVAVKCIKNDATAQA----FLAEASVMTQLRHSNLVQL 64
Query: 573 KGYCAEH-GQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEIC 631
            G   E  G   ++ EY + G+L D L S    ++ L  +  ++ +L    A+EYL    
Sbjct: 65  LGVIVEEKGGLYIVTEYMAKGSLVDYLRSRG--RSVLGGDCLLKFSLDVCEAMEYLE--- 119
Query: 632 QPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
               VHR+  + N+         VSD GL    SS
Sbjct: 120 GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASS 154

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 73/160 (45%), Gaps = 9/160 (5%)
Query: 512 SQENLIGAGMLGSVYRAQLPDGKL-LAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           + ++ +G G  G VY        L +AVK L +      + +EFL+    +  I+H N+V
Sbjct: 35  TMKHKLGGGQYGEVYVGVWKKYSLTVAVKTLKE---DTMEVEEFLKEAAVMKEIKHPNLV 91
Query: 571 ELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           +L G C       ++ EY   G L D L   +  +  ++    + MA   + A+EYL   
Sbjct: 92  QLLGVCTLEPPFYIVTEYMPYGNLLDYLRECN--REEVTAVVLLYMATQISSAMEYLE-- 147
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVS 670
            +   +HR+  + N        V V+D GL+ L++  + +
Sbjct: 148 -KKNFIHRDLAARNCLVGENHVVKVADFGLSRLMTGDTYT 186

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 11/160 (6%)
Query: 509 NSFSQENLIGAGMLGSVY--RAQLPDGKLL--AVKKLDKRASSQQKDDEFLELVNNIDRI 564
            + S + ++GAG  G V   R +LP  K +  A+K L    + +Q+ D FL   + + + 
Sbjct: 45  TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRD-FLGEASIMGQF 103
Query: 565 RHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARAL 624
            H NI+ L+G   +    +++ E   NG+L   L   D      +    + M  G A  +
Sbjct: 104 DHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDA---QFTVIQLVGMLRGIASGM 160
Query: 625 EYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           +YL ++     VHR+  + NI         VSD GL+ ++
Sbjct: 161 KYLSDMGA---VHRDLAARNILINSNLVCKVSDFGLSRVL 197

>pdb|1ZXE|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n Inactivating Mutant In Apo Form Length = 303

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 17/167 (10%)
Query: 506 QYTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKL---DKRASSQQKDDEFLELVNNI 561
           +Y + F +  ++G G  G V +A+   D +  A+KK+   +++ S+   +   L  +N+ 
Sbjct: 3   RYASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVXLLASLNHQ 62
Query: 562 DRIRHA-------NIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRI 614
             +R+        N V+      +     +  EYC N TL D++HS++    N   +   
Sbjct: 63  YVVRYYAAWLERRNFVKPXTAVKKKSTLFIQXEYCENRTLYDLIHSENL---NQQRDEYW 119
Query: 615 RMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
           R+      AL Y+H      I+HRN K  NI       V + D GLA
Sbjct: 120 RLFRQILEALSYIH---SQGIIHRNLKPXNIFIDESRNVKIGDFGLA 163

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 8/148 (5%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +GAG  G V+     +   +AVK L     S Q    FLE  N +  ++H  +V L    
Sbjct: 20  LGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQA---FLEEANLMKTLQHDKLVRLYAVV 76
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
            +     +I E+ + G+L D L SD+  K  L      ++   +A+  E +  I +   +
Sbjct: 77  TKEEPIYIITEFMAKGSLLDFLKSDEGGKVLLP-----KLIDFSAQIAEGMAYIERKNYI 131
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           HR+ ++AN+         ++D GLA +I
Sbjct: 132 HRDLRAANVLVSESLMCKIADFGLARVI 159

>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Complexed With The Inhibitor Pp1 Length = 314

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 79/182 (43%), Gaps = 35/182 (19%)
Query: 511 FSQENLI-----GAGMLGSVYRAQLPDGK------LLAVKKLDKRASSQQKDDEFLELVN 559
           F ++NL+     G G  G V +A     K       +AVK L + AS  +  D  L   N
Sbjct: 20  FPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRD-LLSEFN 78
Query: 560 NIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDEL--------------- 604
            + ++ H ++++L G C++ G  LLI EY   G+L+  L    ++               
Sbjct: 79  VLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSS 138
Query: 605 -----KNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCG 659
                +  L+    I  A   ++ ++YL E+    +VHR+  + NI       + +SD G
Sbjct: 139 LDHPDERALTMGDLISFAWQISQGMQYLAEMS---LVHRDLAARNILVAEGRKMKISDFG 195
Query: 660 LA 661
           L+
Sbjct: 196 LS 197

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 11/160 (6%)
Query: 509 NSFSQENLIGAGMLGSVY--RAQLPDGKLL--AVKKLDKRASSQQKDDEFLELVNNIDRI 564
            + S + ++GAG  G V   R +LP  K +  A+K L    + +Q+ D FL   + + + 
Sbjct: 16  TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRD-FLGEASIMGQF 74
Query: 565 RHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARAL 624
            H NI+ L+G   +    +++ E   NG+L   L   D      +    + M  G A  +
Sbjct: 75  DHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDA---QFTVIQLVGMLRGIASGM 131
Query: 625 EYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           +YL ++     VHR+  + NI         VSD GL+ ++
Sbjct: 132 KYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVL 168

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 11/160 (6%)
Query: 509 NSFSQENLIGAGMLGSVY--RAQLPDGKLL--AVKKLDKRASSQQKDDEFLELVNNIDRI 564
            + S + ++GAG  G V   R +LP  K +  A+K L    + +Q+ D FL   + + + 
Sbjct: 45  TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRD-FLGEASIMGQF 103
Query: 565 RHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARAL 624
            H NI+ L+G   +    +++ E   NG+L   L   D      +    + M  G A  +
Sbjct: 104 DHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDA---QFTVIQLVGMLRGIASGM 160
Query: 625 EYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           +YL ++     VHR+  + NI         VSD GL+ ++
Sbjct: 161 KYLSDMGY---VHRDLAARNILINSNLVCKVSDFGLSRVL 197

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 9/157 (5%)
Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
            S   E  +G G  G V+         +A+K L     S    + FL+    + ++RH  
Sbjct: 18  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS---PEAFLQEAQVMKKLRHEK 74
Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           +V+L    +E     ++ EY S G+L D L    E+   L     + MA   A  + Y+ 
Sbjct: 75  LVQLYAVVSEE-PIYIVTEYMSKGSLLDFLKG--EMGKYLRLPQLVDMAAQIASGMAYVE 131
Query: 629 EICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
            +     VHR+ ++ANI         V+D GLA LI 
Sbjct: 132 RM---NYVHRDLRAANILVGENLVCKVADFGLARLIE 165

>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 79/183 (43%), Gaps = 35/183 (19%)
Query: 510 SFSQENLI-----GAGMLGSVYRAQLPDGK------LLAVKKLDKRASSQQKDDEFLELV 558
            F ++NL+     G G  G V +A     K       +AVK L + AS  +  D  L   
Sbjct: 19  EFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRD-LLSEF 77
Query: 559 NNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDEL-------------- 604
           N + ++ H ++++L G C++ G  LLI EY   G+L+  L    ++              
Sbjct: 78  NVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSS 137
Query: 605 ------KNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDC 658
                 +  L+    I  A   ++ ++YL E+    +VHR+  + NI       + +SD 
Sbjct: 138 SLDHPDERALTMGDLISFAWQISQGMQYLAEM---KLVHRDLAARNILVAEGRKMKISDF 194
Query: 659 GLA 661
           GL+
Sbjct: 195 GLS 197

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 9/157 (5%)
Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
            S   E  +G G  G V+         +A+K L     S    + FL+    + ++RH  
Sbjct: 9   ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS---PEAFLQEAQVMKKLRHEK 65
Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           +V+L    +E     ++ EY S G+L D L    E+   L     + MA   A  + Y+ 
Sbjct: 66  LVQLYAVVSEE-PIYIVTEYMSKGSLLDFLKG--EMGKYLRLPQLVDMAAQIASGMAYVE 122
Query: 629 EICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
            +     VHR+ ++ANI         V+D GLA LI 
Sbjct: 123 RM---NYVHRDLRAANILVGENLVCKVADFGLARLIE 156

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 9/157 (5%)
Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
            S   E  +G G  G V+         +A+K L     S    + FL+    + ++RH  
Sbjct: 7   ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS---PEAFLQEAQVMKKLRHEK 63
Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           +V+L    +E     ++ EY S G+L D L    E+   L     + MA   A  + Y+ 
Sbjct: 64  LVQLYAVVSEE-PIYIVTEYMSKGSLLDFLKG--EMGKYLRLPQLVDMAAQIASGMAYVE 120
Query: 629 EICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
            +     VHR+ ++ANI         V+D GLA LI 
Sbjct: 121 RM---NYVHRDLRAANILVGENLVCKVADFGLARLIE 154

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 9/157 (5%)
Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
            S   E  +G G  G V+         +A+K L     S    + FL+    + ++RH  
Sbjct: 18  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS---PEAFLQEAQVMKKLRHEK 74
Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           +V+L    +E     ++ EY S G+L D L    E+   L     + MA   A  + Y+ 
Sbjct: 75  LVQLYAVVSEE-PIYIVCEYMSKGSLLDFLKG--EMGKYLRLPQLVDMAAQIASGMAYVE 131
Query: 629 EICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
            +     VHR+ ++ANI         V+D GLA LI 
Sbjct: 132 RM---NYVHRDLRAANILVGENLVCKVADFGLARLIE 165

>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 79/183 (43%), Gaps = 35/183 (19%)
Query: 510 SFSQENLI-----GAGMLGSVYRAQLPDGK------LLAVKKLDKRASSQQKDDEFLELV 558
            F ++NL+     G G  G V +A     K       +AVK L + AS  +  D  L   
Sbjct: 19  EFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRD-LLSEF 77
Query: 559 NNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDEL-------------- 604
           N + ++ H ++++L G C++ G  LLI EY   G+L+  L    ++              
Sbjct: 78  NVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSS 137
Query: 605 ------KNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDC 658
                 +  L+    I  A   ++ ++YL E+    +VHR+  + NI       + +SD 
Sbjct: 138 SLDHPDERALTMGDLISFAWQISQGMQYLAEM---KLVHRDLAARNILVAEGRKMKISDF 194
Query: 659 GLA 661
           GL+
Sbjct: 195 GLS 197

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 9/157 (5%)
Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
            S   E  +G G  G V+         +A+K L     S    + FL+    + ++RH  
Sbjct: 18  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS---PEAFLQEAQVMKKLRHEK 74
Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           +V+L    +E     ++ EY S G L D L    E+   L     + MA   A  + Y+ 
Sbjct: 75  LVQLYAVVSEE-PIYIVMEYMSKGCLLDFLKG--EMGKYLRLPQLVDMAAQIASGMAYVE 131
Query: 629 EICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
            +     VHR+ ++ANI         V+D GLA LI 
Sbjct: 132 RM---NYVHRDLRAANILVGENLVCKVADFGLARLIE 165

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 14/178 (7%)
Query: 491 KPFTTARSFTIASLQQYTNSFSQENLIGAGMLGSVY--RAQLPDGK--LLAVKKLDKRAS 546
           +P    RSFT    +   +    E +IG+G  G V   R ++P  +   +A+K L    +
Sbjct: 34  EPGRAGRSFT---REIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYT 90
Query: 547 SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKN 606
            +Q+ D FL   + + +  H NI+ L+G        +++ EY  NG+L   L + D    
Sbjct: 91  ERQRRD-FLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHD---G 146
Query: 607 NLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
             +    + M  G    + YL ++     VHR+  + N+         VSD GL+ ++
Sbjct: 147 QFTIMQLVGMLRGVGAGMRYLSDLG---YVHRDLAARNVLVDSNLVCKVSDFGLSRVL 201

>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 9/162 (5%)
Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
            S   E  +GAG  G V+ A       +AVK +   + S +    FL   N +  ++H  
Sbjct: 15  ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEA---FLAEANVMKTLQHDK 71
Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           +V+L     +     +I E+ + G+L D L SD+  K  L      ++   +A+  E + 
Sbjct: 72  LVKLHAVVTKEPI-YIITEFMAKGSLLDFLKSDEGSKQPLP-----KLIDFSAQIAEGMA 125
Query: 629 EICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVS 670
            I Q   +HR+ ++ANI         ++D GLA +I     +
Sbjct: 126 FIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYT 167

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 9/156 (5%)
Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
            S   E  +GAG  G V+ A       +AVK +   + S +    FL   N +  ++H  
Sbjct: 188 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEA---FLAEANVMKTLQHDK 244
Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           +V+L     +     +I E+ + G+L D L SD+  K  L      ++   +A+  E + 
Sbjct: 245 LVKLHAVVTKE-PIYIITEFMAKGSLLDFLKSDEGSKQPLP-----KLIDFSAQIAEGMA 298
Query: 629 EICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
            I Q   +HR+ ++ANI         ++D GLA +I
Sbjct: 299 FIEQRNYIHRDLRAANILVSASLVCKIADFGLARVI 334

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 14/178 (7%)
Query: 491 KPFTTARSFTIASLQQYTNSFSQENLIGAGMLGSVY--RAQLPDGK--LLAVKKLDKRAS 546
           +P    RSFT    +   +    E +IG+G  G V   R ++P  +   +A+K L    +
Sbjct: 34  EPGRAGRSFT---REIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYT 90
Query: 547 SQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKN 606
            +Q+ D FL   + + +  H NI+ L+G        +++ EY  NG+L   L + D    
Sbjct: 91  ERQRRD-FLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHD---G 146
Query: 607 NLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
             +    + M  G    + YL ++     VHR+  + N+         VSD GL+ ++
Sbjct: 147 QFTIMQLVGMLRGVGAGMRYLSDLG---YVHRDLAARNVLVDSNLVCKVSDFGLSRVL 201

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 9/157 (5%)
Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
            S   E  +G G  G V+         +A+K L     S    + FL+    + ++RH  
Sbjct: 18  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS---PEAFLQEAQVMKKLRHEK 74
Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           +V+L    +E     ++ EY S G L D L    E+   L     + MA   A  + Y+ 
Sbjct: 75  LVQLYAVVSEE-PIYIVTEYMSKGCLLDFLKG--EMGKYLRLPQLVDMAAQIASGMAYVE 131
Query: 629 EICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
            +     VHR+ ++ANI         V+D GLA LI 
Sbjct: 132 RM---NYVHRDLRAANILVGENLVCKVADFGLARLIE 165

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 66/156 (42%), Gaps = 9/156 (5%)
Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
            S   E  +G G  G V+         +A+K L     S    + FL+    + ++RH  
Sbjct: 267 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS---PEAFLQEAQVMKKLRHEK 323
Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           +V+L    +E     ++ EY S G+L D L    E    L     + MA   A  + Y+ 
Sbjct: 324 LVQLYAVVSEE-PIYIVTEYMSKGSLLDFLKG--ETGKYLRLPQLVDMAAQIASGMAYVE 380
Query: 629 EICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
            +     VHR+ ++ANI         V+D GLA LI
Sbjct: 381 RMN---YVHRDLRAANILVGENLVCKVADFGLARLI 413

>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5- Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 70/145 (48%), Gaps = 7/145 (4%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +G G  G VY+AQ  +  +LA  K+    S ++ +D  +E ++ +    H NIV+L    
Sbjct: 45  LGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVE-IDILASCDHPNIVKLLDAF 103
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
                  ++ E+C+ G +  ++    EL+  L+ +    +      AL YLH+     I+
Sbjct: 104 YYENNLWILIEFCAGGAVDAVML---ELERPLTESQIQVVCKQTLDALNYLHD---NKII 157
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLA 661
           HR+ K+ NI       + ++D G++
Sbjct: 158 HRDLKAGNILFTLDGDIKLADFGVS 182

>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded Form) Length = 325

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 70/145 (48%), Gaps = 7/145 (4%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +G G  G VY+AQ  +  +LA  K+    S ++ +D  +E ++ +    H NIV+L    
Sbjct: 45  LGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVE-IDILASCDHPNIVKLLDAF 103
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
                  ++ E+C+ G +  ++    EL+  L+ +    +      AL YLH+     I+
Sbjct: 104 YYENNLWILIEFCAGGAVDAVML---ELERPLTESQIQVVCKQTLDALNYLHD---NKII 157
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLA 661
           HR+ K+ NI       + ++D G++
Sbjct: 158 HRDLKAGNILFTLDGDIKLADFGVS 182

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 9/157 (5%)
Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
            S   E  +G G  G V+         +A+K L     S    + FL+    + ++RH  
Sbjct: 18  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS---PEAFLQEAQVMKKLRHEK 74
Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           +V+L    +E     ++ EY S G+L D L    E+   L     + MA   A  + Y+ 
Sbjct: 75  LVQLYAVVSEE-PIYIVTEYMSKGSLLDFLKG--EMGKYLRLPQLVDMAAQIASGMAYVE 131
Query: 629 EICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
            +     VHR+  +ANI         V+D GLA LI 
Sbjct: 132 RM---NYVHRDLAAANILVGENLVCKVADFGLARLIE 165

>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase ( Diphosphorylated Form) Bound To 5- Amino-3-((4-( Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 70/145 (48%), Gaps = 7/145 (4%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +G G  G VY+AQ  +  +LA  K+    S ++ +D  +E ++ +    H NIV+L    
Sbjct: 45  LGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVE-IDILASCDHPNIVKLLDAF 103
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
                  ++ E+C+ G +  ++    EL+  L+ +    +      AL YLH+     I+
Sbjct: 104 YYENNLWILIEFCAGGAVDAVML---ELERPLTESQIQVVCKQTLDALNYLHD---NKII 157
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLA 661
           HR+ K+ NI       + ++D G++
Sbjct: 158 HRDLKAGNILFTLDGDIKLADFGVS 182

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 29/162 (17%)
Query: 517 IGAGMLGSVYRAQ---LPD--GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +G G  GSV   +   L D  G+++AVKKL        +D  F   +  +  ++H NIV+
Sbjct: 21  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRD--FEREIEILKSLQHDNIVK 78
Query: 572 LKGYCAEHGQR--LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
            KG C   G+R   LI E+   G+L++ L    E  +++             + L+Y  +
Sbjct: 79  YKGVCYSAGRRNLKLIMEFLPYGSLREYLQKHKERIDHI-------------KLLQYTSQ 125
Query: 630 ICQ-------PPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           IC+          +HR+  + NI       V + D GL  ++
Sbjct: 126 ICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVL 167

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 9/157 (5%)
Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
            S   E  +G G  G V+         +A+K L     S    + FL+    + ++RH  
Sbjct: 11  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS---PEAFLQEAQVMKKLRHEK 67
Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           +V+L    +E     ++ EY S G+L D L    E    L     + MA   A  + Y+ 
Sbjct: 68  LVQLYAVVSEE-PIYIVTEYMSKGSLLDFLKG--ETGKYLRLPQLVDMAAQIASGMAYVE 124
Query: 629 EICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
            +     VHR+ ++ANI         V+D GLA LI 
Sbjct: 125 RM---NYVHRDLRAANILVGENLVCKVADFGLARLIE 158

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 9/157 (5%)
Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
            S   E  +G G  G V+         +A+K L     S    + FL+    + ++RH  
Sbjct: 8   ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS---PEAFLQEAQVMKKLRHEK 64
Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           +V+L    +E     ++ EY S G+L D L    E    L     + MA   A  + Y+ 
Sbjct: 65  LVQLYAVVSEE-PIXIVTEYMSKGSLLDFLKG--ETGKYLRLPQLVDMAAQIASGMAYVE 121
Query: 629 EICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
            +     VHR+ ++ANI         V+D GLA LI 
Sbjct: 122 RM---NYVHRDLRAANILVGENLVCKVADFGLARLIE 155

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 66/156 (42%), Gaps = 9/156 (5%)
Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
            S   E  +G G  G V+         +A+K L     S    + FL+    + ++RH  
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS---PEAFLQEAQVMKKLRHEK 240
Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           +V+L    +E     ++ EY S G+L D L    E    L     + MA   A  + Y+ 
Sbjct: 241 LVQLYAVVSEE-PIYIVTEYMSKGSLLDFLKG--ETGKYLRLPQLVDMAAQIASGMAYVE 297
Query: 629 EICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
            +     VHR+ ++ANI         V+D GLA LI
Sbjct: 298 RM---NYVHRDLRAANILVGENLVCKVADFGLARLI 330

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 66/156 (42%), Gaps = 9/156 (5%)
Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
            S   E  +G G  G V+         +A+K L     S    + FL+    + ++RH  
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS---PEAFLQEAQVMKKLRHEK 240
Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           +V+L    +E     ++ EY S G+L D L    E    L     + MA   A  + Y+ 
Sbjct: 241 LVQLYAVVSEE-PIYIVTEYMSKGSLLDFLKG--ETGKYLRLPQLVDMAAQIASGMAYVE 297
Query: 629 EICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
            +     VHR+ ++ANI         V+D GLA LI
Sbjct: 298 RM---NYVHRDLRAANILVGENLVCKVADFGLARLI 330

>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild- Type In Apo Form. Length = 303

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 17/167 (10%)
Query: 506 QYTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKL---DKRASSQQKDDEFLELVNNI 561
           +Y + F +  ++G G  G V +A+   D +  A+KK+   +++ S+   +   L  +N+ 
Sbjct: 3   RYASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQ 62
Query: 562 DRIRHA-------NIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRI 614
             +R+        N V+      +     +  EYC N TL D++HS++    N   +   
Sbjct: 63  YVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENRTLYDLIHSENL---NQQRDEYW 119
Query: 615 RMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
           R+      AL Y+H      I+HR+ K  NI       V + D GLA
Sbjct: 120 RLFRQILEALSYIH---SQGIIHRDLKPMNIFIDESRNVKIGDFGLA 163

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 9/153 (5%)
Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
            S   E  +GAG  G V+ A       +AVK +   + S +    FL   N +  ++H  
Sbjct: 182 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEA---FLAEANVMKTLQHDK 238
Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           +V+L     +     +I E+ + G+L D L SD+  K  L      ++   +A+  E + 
Sbjct: 239 LVKLHAVVTKE-PIYIITEFMAKGSLLDFLKSDEGSKQPLP-----KLIDFSAQIAEGMA 292
Query: 629 EICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
            I Q   +HR+ ++ANI         ++D GLA
Sbjct: 293 FIEQRNYIHRDLRAANILVSASLVCKIADFGLA 325

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 8/146 (5%)
Query: 517 IGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           IG G  G V+  +L  D  L+AVK   +      K  +FL+    + +  H NIV L G 
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKA-KFLQEARILKQYSHPNIVRLIGV 180
Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
           C +     ++ E    G     L ++      L   T ++M   AA  +EYL   C    
Sbjct: 181 CTQKQPIYIVMELVQGGDFLTFLRTEG---ARLRVKTLLQMVGDAAAGMEYLESKC---C 234
Query: 636 VHRNFKSANIXXXXXXAVSVSDCGLA 661
           +HR+  + N        + +SD G++
Sbjct: 235 IHRDLAARNCLVTEKNVLKISDFGMS 260

>pdb|1B6C|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Type I Tgf-Beta Receptor In Complex With Fkbp12 Length = 342

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 26/158 (16%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGY 575
           IG G  G V+R +   G+ +AVK    R   S  ++ E  + V     +RH NI+   G+
Sbjct: 50  IGKGRFGEVWRGKW-RGEEVAVKIFSSREERSWFREAEIYQTV----MLRHENIL---GF 101
Query: 576 CAEHG-------QRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
            A          Q  L+ +Y  +G+L D L+     +  ++    I++AL  A  L +LH
Sbjct: 102 IAADNKDNGTWTQLWLVSDYHEHGSLFDYLN-----RYTVTVEGMIKLALSTASGLAHLH 156
Query: 629 -EIC----QPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
            EI     +P I HR+ KS NI         ++D GLA
Sbjct: 157 MEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA 194

>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 8/146 (5%)
Query: 517 IGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           IG G  G V+  +L  D  L+AVK   +      K  +FL+    + +  H NIV L G 
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKA-KFLQEARILKQYSHPNIVRLIGV 180
Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
           C +     ++ E    G     L ++      L   T ++M   AA  +EYL   C    
Sbjct: 181 CTQKQPIYIVMELVQGGDFLTFLRTEG---ARLRVKTLLQMVGDAAAGMEYLESKC---C 234
Query: 636 VHRNFKSANIXXXXXXAVSVSDCGLA 661
           +HR+  + N        + +SD G++
Sbjct: 235 IHRDLAARNCLVTEKNVLKISDFGMS 260

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 66/156 (42%), Gaps = 9/156 (5%)
Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
            S   E  +G G  G V+         +A+K L     S    + FL+    + ++RH  
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS---PEAFLQEAQVMKKLRHEK 240
Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           +V+L    +E     ++ EY S G+L D L    E    L     + MA   A  + Y+ 
Sbjct: 241 LVQLYAVVSEE-PIYIVGEYMSKGSLLDFLKG--ETGKYLRLPQLVDMAAQIASGMAYVE 297
Query: 629 EICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
            +     VHR+ ++ANI         V+D GLA LI
Sbjct: 298 RM---NYVHRDLRAANILVGENLVCKVADFGLARLI 330

>pdb|1PY5|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Inhibitor Length = 326

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 26/158 (16%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGY 575
           IG G  G V+R +   G+ +AVK    R   S  ++ E  + V     +RH NI+   G+
Sbjct: 37  IGKGRFGEVWRGKWR-GEEVAVKIFSSREERSWFREAEIYQTV----MLRHENIL---GF 88
Query: 576 CAEHG-------QRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
            A          Q  L+ +Y  +G+L D L+     +  ++    I++AL  A  L +LH
Sbjct: 89  IAADNKDNGTWTQLWLVSDYHEHGSLFDYLN-----RYTVTVEGMIKLALSTASGLAHLH 143
Query: 629 -EIC----QPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
            EI     +P I HR+ KS NI         ++D GLA
Sbjct: 144 MEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA 181

>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7 Length = 310

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 17/175 (9%)
Query: 510 SFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKK------LDKRASSQQKDDEFLELVNNID 562
           +F  E  IG G    VYRA  L DG  +A+KK      +D +A +     + ++ ++ + 
Sbjct: 33  NFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARA-----DCIKEIDLLK 87
Query: 563 RIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR 622
           ++ H N+++      E  +  ++ E    G L  M+    + K  +   T  +  +    
Sbjct: 88  QLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCS 147
Query: 623 ALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQVSHNLT 677
           ALE++H      ++HR+ K AN+       V + D GL    SS + +  +H+L 
Sbjct: 148 ALEHMHS---RRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTA--AHSLV 197

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 9/156 (5%)
Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
            S   E  +G G  G V+         +A+K L          + FL+    + ++RH  
Sbjct: 185 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLK---PGNMSPEAFLQEAQVMKKLRHEK 241
Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           +V+L    +E     ++ EY S G+L D L    E+   L     + MA   A  + Y+ 
Sbjct: 242 LVQLYAVVSEE-PIYIVTEYMSKGSLLDFLKG--EMGKYLRLPQLVDMAAQIASGMAYVE 298
Query: 629 EICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
            +     VHR+ ++ANI         V+D GL  LI
Sbjct: 299 RM---NYVHRDLRAANILVGENLVCKVADFGLGRLI 331

>pdb|3TZM|A Chain A, Tgf-Beta Receptor Type 1 In Complex With Sb431542 Length = 309

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 26/158 (16%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGY 575
           IG G  G V+R +   G+ +AVK    R   S  ++ E  + V     +RH NI+   G+
Sbjct: 17  IGKGRFGEVWRGKWR-GEEVAVKIFSSREERSWFREAEIYQTV----MLRHENIL---GF 68
Query: 576 CAEHG-------QRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
            A          Q  L+ +Y  +G+L D L+     +  ++    I++AL  A  L +LH
Sbjct: 69  IAADNKDNGTWTQLWLVSDYHEHGSLFDYLN-----RYTVTVEGMIKLALSTASGLAHLH 123
Query: 629 -EIC----QPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
            EI     +P I HR+ KS NI         ++D GLA
Sbjct: 124 MEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA 161

>pdb|1RW8|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Atp Site Inhibitor Length = 301

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 26/158 (16%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGY 575
           IG G  G V+R +   G+ +AVK    R   S  ++ E  + V     +RH NI+   G+
Sbjct: 12  IGKGRFGEVWRGKWR-GEEVAVKIFSSREERSWFREAEIYQTV----MLRHENIL---GF 63
Query: 576 CAEHG-------QRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
            A          Q  L+ +Y  +G+L D L+     +  ++    I++AL  A  L +LH
Sbjct: 64  IAADNKDNGTWTQLWLVSDYHEHGSLFDYLN-----RYTVTVEGMIKLALSTASGLAHLH 118
Query: 629 -EIC----QPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
            EI     +P I HR+ KS NI         ++D GLA
Sbjct: 119 MEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA 156

>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain Length = 331

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 72/165 (43%), Gaps = 12/165 (7%)
Query: 503 SLQQYTNSFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNI 561
           S+++Y N      L+G G  G V + +  D G+++A+KK  +    +      +  +  +
Sbjct: 23  SMEKYENL----GLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLL 78
Query: 562 DRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAA 621
            ++RH N+V L   C +  +  L++E+  +  L D+    +   N L +    +      
Sbjct: 79  KQLRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDL----ELFPNGLDYQVVQKYLFQII 134
Query: 622 RALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
             + + H      I+HR+ K  NI       V + D G A  +++
Sbjct: 135 NGIGFCH---SHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAA 176

>pdb|2WOT|A Chain A, Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)-3- Pyridyl)oxy)-N-(3,4,5-Trimethoxyphenyl)pyridin-2-Amine Length = 306

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 26/158 (16%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGY 575
           IG G  G V+R +   G+ +AVK    R   S  ++ E  + V     +RH NI+   G+
Sbjct: 14  IGKGRFGEVWRGKWR-GEEVAVKIFSSREERSWFREAEIYQTV----MLRHENIL---GF 65
Query: 576 CAEHG-------QRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
            A          Q  L+ +Y  +G+L D L+     +  ++    I++AL  A  L +LH
Sbjct: 66  IAADNKDNGTWTQLWLVSDYHEHGSLFDYLN-----RYTVTVEGMIKLALSTASGLAHLH 120
Query: 629 -EIC----QPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
            EI     +P I HR+ KS NI         ++D GLA
Sbjct: 121 MEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA 158

>pdb|1VJY|A Chain A, Crystal Structure Of A Naphthyridine Inhibitor Of Human Tgf- Beta Type I Receptor Length = 303

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 26/158 (16%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRAS-SQQKDDEFLELVNNIDRIRHANIVELKGY 575
           IG G  G V+R +   G+ +AVK    R   S  ++ E  + V     +RH NI+   G+
Sbjct: 11  IGKGRFGEVWRGKWR-GEEVAVKIFSSREERSWFREAEIYQTV----MLRHENIL---GF 62
Query: 576 CAEHG-------QRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
            A          Q  L+ +Y  +G+L D L+     +  ++    I++AL  A  L +LH
Sbjct: 63  IAADNKDNGTWTQLWLVSDYHEHGSLFDYLN-----RYTVTVEGMIKLALSTASGLAHLH 117
Query: 629 -EIC----QPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
            EI     +P I HR+ KS NI         ++D GLA
Sbjct: 118 MEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA 155

>pdb|2QLU|A Chain A, Crystal Structure Of Activin Receptor Type Ii Kinase Domain From Human Length = 314

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 27/164 (16%)
Query: 520 GMLGSVYRAQLPDGKLLAVK--KLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCA 577
           G  G V++AQL +   +AVK   L  + S Q + + F     +   ++H N+++      
Sbjct: 26  GRFGCVWKAQLMN-DFVAVKIFPLQDKQSWQSEREIF-----STPGMKHENLLQFIA-AE 78
Query: 578 EHGQRL-----LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE--- 629
           + G  L     LI  +   G+L D L       N ++WN    +A   +R L YLHE   
Sbjct: 79  KRGSNLEVELWLITAFHDKGSLTDYLKG-----NIITWNELCHVAETMSRGLSYLHEDVP 133
Query: 630 IC-----QPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGS 668
            C     +P I HR+FKS N+         ++D GLA     G 
Sbjct: 134 WCRGEGHKPSIAHRDFKSKNVLLKSDLTAVLADFGLAVRFEPGK 177

>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase Length = 314

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 73/147 (49%), Gaps = 13/147 (8%)
Query: 517 IGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           +G G  GSVY+A     G+++A+K++   +  Q    E ++ ++ + +    ++V+  G 
Sbjct: 37  LGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQ----EIIKEISIMQQCDSPHVVKYYGS 92
Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAA-RALEYLHEICQPP 634
             ++    ++ EYC  G++ D++     L+N       I   L +  + LEYLH + +  
Sbjct: 93  YFKNTDLWIVMEYCGAGSVSDIIR----LRNKTLTEDEIATILQSTLKGLEYLHFMRK-- 146
Query: 635 IVHRNFKSANIXXXXXXAVSVSDCGLA 661
            +HR+ K+ NI         ++D G+A
Sbjct: 147 -IHRDIKAGNILLNTEGHAKLADFGVA 172

>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 18/159 (11%)
Query: 517 IGAGMLGSVYRAQL-PDG----KLLAVKKLDKRASSQQKDD--EFLELVNNIDRIRHANI 569
           +G G  G V   +  P+G    + +AVK L   +      D  + +E++ N+    H NI
Sbjct: 29  LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNL---YHENI 85
Query: 570 VELKGYCAEHGQR--LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYL 627
           V+ KG C E G     LI E+  +G+L++ L  +   KN ++   +++ A+   + ++YL
Sbjct: 86  VKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKN---KNKINLKQQLKYAVQICKGMDYL 142
Query: 628 HEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
                   VHR+  + N+       V + D GL   I +
Sbjct: 143 G---SRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIET 178

>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes Length = 290

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 18/159 (11%)
Query: 517 IGAGMLGSVYRAQL-PDG----KLLAVKKLDKRASSQQKDD--EFLELVNNIDRIRHANI 569
           +G G  G V   +  P+G    + +AVK L   +      D  + +E++ N+    H NI
Sbjct: 17  LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNL---YHENI 73
Query: 570 VELKGYCAEHGQR--LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYL 627
           V+ KG C E G     LI E+  +G+L++ L  +   KN ++   +++ A+   + ++YL
Sbjct: 74  VKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKN---KNKINLKQQLKYAVQICKGMDYL 130
Query: 628 HEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
                   VHR+  + N+       V + D GL   I +
Sbjct: 131 G---SRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIET 166

>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer Length = 319

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 78/184 (42%), Gaps = 12/184 (6%)
Query: 480 GTAVKTSTKTAKPFTTARSFTIASLQQYTNSFSQ---ENLIGAGMLGSVYRAQLPDGKLL 536
           G  +  S  +A+ F    S T   LQ++   F Q     LIG G  G VY  +   G++ 
Sbjct: 1   GPEMNLSLLSARSFPRKASQTSIFLQEWDIPFEQLEIGELIGKGRFGQVYHGRW-HGEV- 58
Query: 537 AVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQD 596
           A++ +D    ++ +   F   V    + RH N+V   G C       +I   C   TL  
Sbjct: 59  AIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITSLCKGRTLYS 118
Query: 597 MLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVS 656
           ++    + K  L  N   ++A    + + YLH      I+H++ KS N+       V ++
Sbjct: 119 VVR---DAKIVLDVNKTRQIAQEIVKGMGYLH---AKGILHKDLKSKNVFYDNGKVV-IT 171
Query: 657 DCGL 660
           D GL
Sbjct: 172 DFGL 175

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 66/157 (42%), Gaps = 9/157 (5%)
Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
            S   E  +G G  G V+         +A+K L     S    + FL+    + ++RH  
Sbjct: 15  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS---PEAFLQEAQVMKKLRHEK 71
Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           +V+L    +E     ++ EY + G+L D L    E    L     + M+   A  + Y+ 
Sbjct: 72  LVQLYAVVSEE-PIYIVTEYMNKGSLLDFLKG--ETGKYLRLPQLVDMSAQIASGMAYVE 128
Query: 629 EICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
            +     VHR+ ++ANI         V+D GLA LI 
Sbjct: 129 RM---NYVHRDLRAANILVGENLVCKVADFGLARLIE 162

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 66/157 (42%), Gaps = 9/157 (5%)
Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
            S   E  +G G  G V+         +A+K L     S    + FL+    + ++RH  
Sbjct: 15  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS---PEAFLQEAQVMKKLRHEK 71
Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           +V+L    +E     ++ EY + G+L D L    E    L     + M+   A  + Y+ 
Sbjct: 72  LVQLYAVVSEE-PIYIVTEYMNKGSLLDFLKG--ETGKYLRLPQLVDMSAQIASGMAYVE 128
Query: 629 EICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
            +     VHR+ ++ANI         V+D GLA LI 
Sbjct: 129 RM---NYVHRDLRAANILVGENLVCKVADFGLARLIE 162

>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor 1 Length = 317

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 19/140 (13%)
Query: 536 LAVKKLDKRASSQQKDDEF--LELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGT 593
           +AVK L   A+ +   D    +E++  I +  H NI+ L G C + G   +I EY S G 
Sbjct: 63  VAVKMLKSDATEKDLSDLISEMEMMKMIGK--HKNIINLLGACTQDGPLYVIVEYASKGN 120
Query: 594 LQDMLHSDD----ELKNNLSWNTR--------IRMALGAARALEYLHEICQPPIVHRNFK 641
           L++ L + +    E   N S N          +  A   AR +EYL        +HR+  
Sbjct: 121 LREYLQAREPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYL---ASKKCIHRDLA 177
Query: 642 SANIXXXXXXAVSVSDCGLA 661
           + N+       + ++D GLA
Sbjct: 178 ARNVLVTEDNVMKIADFGLA 197

>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase Length = 278

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 20/159 (12%)
Query: 511 FSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI----R 565
           F   NL+G G    VYRA+ +  G  +A+K +DK+A  +      ++ V N  +I    +
Sbjct: 13  FKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAG---MVQRVQNEVKIHCQLK 69
Query: 566 HANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNL---SWNTRIRMALGAAR 622
           H +I+EL  Y  +     L+ E C NG +      +  LKN +   S N           
Sbjct: 70  HPSILELYNYFEDSNYVYLVLEMCHNGEM------NRYLKNRVKPFSENEARHFMHQIIT 123
Query: 623 ALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
            + YLH      I+HR+   +N+       + ++D GLA
Sbjct: 124 GMLYLH---SHGILHRDLTLSNLLLTRNMNIKIADFGLA 159

>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A Resolution Length = 336

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 69/162 (42%), Gaps = 30/162 (18%)
Query: 516 LIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI---RHANIVEL 572
           LIG G  G+VY+  L D + +AVK     A+ Q   +E      NI R+    H NI   
Sbjct: 20  LIGRGRYGAVYKGSL-DERPVAVKVF-SFANRQNFINE-----KNIYRVPLMEHDNIARF 72
Query: 573 -----KGYCAEHGQRLLIYEYCSNGTLQDML--HSDDELKNNLSWNTRIRMALGAARALE 625
                +       + LL+ EY  NG+L   L  H+ D       W +  R+A    R L 
Sbjct: 73  IVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHTSD-------WVSSCRLAHSVTRGLA 125
Query: 626 YLH------EICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
           YLH      +  +P I HR+  S N+         +SD GL+
Sbjct: 126 YLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLS 167

>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein Kina Length = 313

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 14/164 (8%)
Query: 515 NLIGAGMLGSVYRAQLP--DGKLL--AVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
            ++G G  GSV    L   DG  L  AVK +    SSQ++ +EFL     +    H N++
Sbjct: 40  KILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVI 99
Query: 571 ELKGYCAEHGQR-----LLIYEYCSNGTLQD-MLHSDDEL-KNNLSWNTRIRMALGAARA 623
            L G C E   +     ++I  +   G L   +L+S  E    ++   T ++  +  A  
Sbjct: 100 RLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALG 159
Query: 624 LEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSG 667
           +EYL        +HR+  + N        V V+D GL+  I SG
Sbjct: 160 MEYL---SNRNFLHRDLAARNCMLRDDMTVCVADFGLSKKIYSG 200

>pdb|3MDY|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Bone Morp Protein Receptor Type-1b (Bmpr1b) In Complex With Fkbp12 An 193189 Length = 337

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 20/155 (12%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV-----E 571
           IG G  G V+  +    K+          +S  ++ E  + V     +RH NI+     +
Sbjct: 45  IGKGRYGEVWMGKWRGEKVAVKVFFTTEEASWFRETEIYQTV----LMRHENILGFIAAD 100
Query: 572 LKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH-EI 630
           +KG      Q  LI +Y  NG+L D L S       L   + +++A  +   L +LH EI
Sbjct: 101 IKG-TGSWTQLYLITDYHENGSLYDYLKS-----TTLDAKSMLKLAYSSVSGLCHLHTEI 154
Query: 631 C----QPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
                +P I HR+ KS NI         ++D GLA
Sbjct: 155 FSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA 189

>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently Binding To Wz4002 Length = 331

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 79/163 (48%), Gaps = 13/163 (7%)
Query: 509 NSFSQENLIGAGMLGSVYRA-QLPDGKLL----AVKKLDKRASSQQKDDEFLELVNNIDR 563
             F +  ++G+G  G+VY+   +P+G+ +    A+K+L + A+S + + E L+    +  
Sbjct: 19  TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKEL-REATSPKANKEILDEAYVMAS 77
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
           + + ++  L G C     +L I +    G L D +    E K+N+     +   +  A+ 
Sbjct: 78  VDNPHVCRLLGICLTSTVQL-IMQLMPFGCLLDYVR---EHKDNIGSQYLLNWCVQIAKG 133
Query: 624 LEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
           + YL +     +VHR+  + N+       V ++D GLA L+ +
Sbjct: 134 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 173

>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With Dacomitinib Length = 329

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 79/163 (48%), Gaps = 13/163 (7%)
Query: 509 NSFSQENLIGAGMLGSVYRA-QLPDGKLL----AVKKLDKRASSQQKDDEFLELVNNIDR 563
             F +  ++G+G  G+VY+   +P+G+ +    A+K+L + A+S + + E L+    +  
Sbjct: 17  TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKEL-REATSPKANKEILDEAYVMAS 75
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
           + + ++  L G C     +L I +    G L D +    E K+N+     +   +  A+ 
Sbjct: 76  VDNPHVCRLLGICLTSTVQL-IMQLMPFGCLLDYVR---EHKDNIGSQYLLNWCVQIAKG 131
Query: 624 LEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
           + YL +     +VHR+  + N+       V ++D GLA L+ +
Sbjct: 132 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 171

>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 79/163 (48%), Gaps = 13/163 (7%)
Query: 509 NSFSQENLIGAGMLGSVYRA-QLPDGKLL----AVKKLDKRASSQQKDDEFLELVNNIDR 563
             F +  ++G+G  G+VY+   +P+G+ +    A+K+L + A+S + + E L+    +  
Sbjct: 18  TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKEL-REATSPKANKEILDEAYVMAS 76
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
           + + ++  L G C     +L I +    G L D +    E K+N+     +   +  A+ 
Sbjct: 77  VDNPHVCRLLGICLTSTVQL-IMQLMPFGCLLDYVR---EHKDNIGSQYLLNWCVQIAKG 132
Query: 624 LEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
           + YL +     +VHR+  + N+       V ++D GLA L+ +
Sbjct: 133 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 172

>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase Domain With 3-(2,6-Dichloro-3, 5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1- Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398) Length = 382

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 25/143 (17%)
Query: 536 LAVKKLDKRASSQQKDDEF--LELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGT 593
           +AVK L   A+ +   D    +E++  I +  H NI+ L G C + G   +I EY S G 
Sbjct: 104 VAVKMLKSDATEKDLSDLISEMEMMKMIGK--HKNIINLLGACTQDGPLYVIVEYASKGN 161
Query: 594 LQDML---------------HSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHR 638
           L++ L               H+ +E    LS    +  A   AR +EYL        +HR
Sbjct: 162 LREYLQARRPPGLEYSYNPSHNPEE---QLSSKDLVSCAYQVARGMEYL---ASKKCIHR 215
Query: 639 NFKSANIXXXXXXAVSVSDCGLA 661
           +  + N+       + ++D GLA
Sbjct: 216 DLAARNVLVTEDNVMKIADFGLA 238

>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation Length = 327

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 79/163 (48%), Gaps = 13/163 (7%)
Query: 509 NSFSQENLIGAGMLGSVYRA-QLPDGKLL----AVKKLDKRASSQQKDDEFLELVNNIDR 563
             F +  ++G+G  G+VY+   +P+G+ +    A+K+L + A+S + + E L+    +  
Sbjct: 15  TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKEL-REATSPKANKEILDEAYVMAS 73
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
           + + ++  L G C     +L I +    G L D +    E K+N+     +   +  A+ 
Sbjct: 74  VDNPHVCRLLGICLTSTVQL-IMQLMPFGCLLDYVR---EHKDNIGSQYLLNWCVQIAKG 129
Query: 624 LEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
           + YL +     +VHR+  + N+       V ++D GLA L+ +
Sbjct: 130 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 169

>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Indirubin 3'-Monoxime Bound Length = 313

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 9/159 (5%)
Query: 504 LQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDR 563
            Q     + +   +G G  G VY+A+   G+++A+K++   A  +      +  ++ +  
Sbjct: 16  FQGLMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKE 75
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMAL-GAAR 622
           + H NIV L           L++E+      +D+    DE K  L  +++I++ L    R
Sbjct: 76  LHHPNIVSLIDVIHSERCLTLVFEFME----KDLKKVLDENKTGLQ-DSQIKIYLYQLLR 130
Query: 623 ALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
            + + H   Q  I+HR+ K  N+      A+ ++D GLA
Sbjct: 131 GVAHCH---QHRILHRDLKPQNLLINSDGALKLADFGLA 166

>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights Into Receptor Autoregulation Length = 343

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 76/188 (40%), Gaps = 30/188 (15%)
Query: 517 IGAGMLGSVYRAQLP------DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           IG G  G V++A+ P         ++AVK L + AS+  + D F      +    + NIV
Sbjct: 55  IGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQAD-FQREAALMAEFDNPNIV 113
Query: 571 ELKGYCAEHGQRLLIYEYCSNGTLQDML------------HSDDELKNN--------LSW 610
           +L G CA      L++EY + G L + L            HSD   +          LS 
Sbjct: 114 KLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSC 173
Query: 611 NTRIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVS 670
             ++ +A   A  + YL E      VHR+  + N        V ++D GL+  I S    
Sbjct: 174 AEQLCIARQVAAGMAYLSER---KFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYY 230
Query: 671 QVSHNLTI 678
           +   N  I
Sbjct: 231 KADGNDAI 238

>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Complex With Aee788 Length = 328

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 79/163 (48%), Gaps = 13/163 (7%)
Query: 509 NSFSQENLIGAGMLGSVYRA-QLPDGKLL----AVKKLDKRASSQQKDDEFLELVNNIDR 563
             F +  ++G+G  G+VY+   +P+G+ +    A+K+L + A+S + + E L+    +  
Sbjct: 16  TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKEL-REATSPKANKEILDEAYVMAS 74
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
           + + ++  L G C     +L I +    G L D +    E K+N+     +   +  A+ 
Sbjct: 75  VDNPHVCRLLGICLTSTVQL-IMQLMPFGCLLDYVR---EHKDNIGSQYLLNWCVQIAKG 130
Query: 624 LEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
           + YL +     +VHR+  + N+       V ++D GLA L+ +
Sbjct: 131 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 170

>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Compex With Hki-272 Length = 328

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 79/163 (48%), Gaps = 13/163 (7%)
Query: 509 NSFSQENLIGAGMLGSVYRA-QLPDGKLL----AVKKLDKRASSQQKDDEFLELVNNIDR 563
             F +  ++G+G  G+VY+   +P+G+ +    A+K+L + A+S + + E L+    +  
Sbjct: 16  TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKEL-REATSPKANKEILDEAYVMAS 74
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
           + + ++  L G C     +L I +    G L D +    E K+N+     +   +  A+ 
Sbjct: 75  VDNPHVCRLLGICLTSTVQL-IMQLMPFGXLLDYVR---EHKDNIGSQYLLNWCVQIAKG 130
Query: 624 LEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
           + YL +     +VHR+  + N+       V ++D GLA L+ +
Sbjct: 131 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 170

>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic Acid ((s)-1,2,2-trimethyl-propyl)-amide Length = 314

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 29/162 (17%)
Query: 517 IGAGMLGSVYRAQ---LPD--GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +G G  GSV   +   L D  G L+AVK+L      QQ+D  F   +  +  +    IV+
Sbjct: 18  LGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRD--FQREIQILKALHSDFIVK 75
Query: 572 LKGYCAEHGQR--LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
            +G     G++   L+ EY  +G L+D L              R R  L A+R L Y  +
Sbjct: 76  YRGVSYGPGRQSLRLVMEYLPSGCLRDFLQ-------------RHRARLDASRLLLYSSQ 122
Query: 630 ICQ-------PPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           IC+          VHR+  + NI       V ++D GLA L+
Sbjct: 123 ICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLL 164

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 76/161 (47%), Gaps = 11/161 (6%)
Query: 509 NSFSQENLIGAGMLGSVYRA-QLPDGKLLAVK---KLDKRASSQQKDDEFLELVNNIDRI 564
               +  ++G+G  G+VY+   +P+G+ + +    K+    +  + + EF++    +  +
Sbjct: 38  TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASM 97
Query: 565 RHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARAL 624
            H ++V L G C     +L + +   +G L + +H   E K+N+     +   +  A+ +
Sbjct: 98  DHPHLVRLLGVCLSPTIQL-VTQLMPHGCLLEYVH---EHKDNIGSQLLLNWCVQIAKGM 153
Query: 625 EYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
            YL E     +VHR+  + N+       V ++D GLA L+ 
Sbjct: 154 MYLEE---RRLVHRDLAARNVLVKSPNHVKITDFGLARLLE 191

>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor- Gw572016 Length = 352

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 79/163 (48%), Gaps = 13/163 (7%)
Query: 509 NSFSQENLIGAGMLGSVYRA-QLPDGKLL----AVKKLDKRASSQQKDDEFLELVNNIDR 563
             F +  ++G+G  G+VY+   +P+G+ +    A+K+L + A+S + + E L+    +  
Sbjct: 40  TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKEL-REATSPKANKEILDEAYVMAS 98
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
           + + ++  L G C     +L I +    G L D +    E K+N+     +   +  A+ 
Sbjct: 99  VDNPHVCRLLGICLTSTVQL-ITQLMPFGCLLDYVR---EHKDNIGSQYLLNWCVQIAKG 154
Query: 624 LEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
           + YL +     +VHR+  + N+       V ++D GLA L+ +
Sbjct: 155 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 194

>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain Length = 330

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 79/163 (48%), Gaps = 13/163 (7%)
Query: 509 NSFSQENLIGAGMLGSVYRA-QLPDGKLL----AVKKLDKRASSQQKDDEFLELVNNIDR 563
             F +  ++G+G  G+VY+   +P+G+ +    A+K+L + A+S + + E L+    +  
Sbjct: 18  TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKEL-REATSPKANKEILDEAYVMAS 76
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
           + + ++  L G C     +L I +    G L D +    E K+N+     +   +  A+ 
Sbjct: 77  VDNPHVCRLLGICLTSTVQL-ITQLMPFGCLLDYVR---EHKDNIGSQYLLNWCVQIAKG 132
Query: 624 LEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
           + YL +     +VHR+  + N+       V ++D GLA L+ +
Sbjct: 133 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 172

>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In Complex With Dacomitinib (soaked) Length = 329

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 79/163 (48%), Gaps = 13/163 (7%)
Query: 509 NSFSQENLIGAGMLGSVYRA-QLPDGKLL----AVKKLDKRASSQQKDDEFLELVNNIDR 563
             F +  ++G+G  G+VY+   +P+G+ +    A+K+L + A+S + + E L+    +  
Sbjct: 17  TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKEL-REATSPKANKEILDEAYVMAS 75
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
           + + ++  L G C     +L I +    G L D +    E K+N+     +   +  A+ 
Sbjct: 76  VDNPHVCRLLGICLTSTVQL-ITQLMPFGCLLDYVR---EHKDNIGSQYLLNWCVQIAKG 131
Query: 624 LEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
           + YL +     +VHR+  + N+       V ++D GLA L+ +
Sbjct: 132 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 171

>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 79/163 (48%), Gaps = 13/163 (7%)
Query: 509 NSFSQENLIGAGMLGSVYRA-QLPDGKLL----AVKKLDKRASSQQKDDEFLELVNNIDR 563
             F +  ++G+G  G+VY+   +P+G+ +    A+K+L + A+S + + E L+    +  
Sbjct: 18  TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKEL-REATSPKANKEILDEAYVMAS 76
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
           + + ++  L G C     +L I +    G L D +    E K+N+     +   +  A+ 
Sbjct: 77  VDNPHVCRLLGICLTSTVQL-ITQLMPFGCLLDYVR---EHKDNIGSQYLLNWCVQIAKG 132
Query: 624 LEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
           + YL +     +VHR+  + N+       V ++D GLA L+ +
Sbjct: 133 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 172

>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Length = 420

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 22/168 (13%)
Query: 510 SFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKL--DKRASSQQKDDEFLELVNNIDRIRH 566
           S++   +IG G  G VY+A+L D G+L+A+KK+  DKR  +++     L+++  +D   H
Sbjct: 55  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRE-----LQIMRKLD---H 106
Query: 567 ANIVELKGYCAEHGQRL------LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGA 620
            NIV L+ +    G++       L+ +Y      +   H     +       ++ M    
Sbjct: 107 CNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYM-YQL 165
Query: 621 ARALEYLHEICQPPIVHRNFKSANIXXXXXXAV-SVSDCGLAPLISSG 667
            R+L Y+H      I HR+ K  N+      AV  + D G A  +  G
Sbjct: 166 FRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG 210

>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 34-Jab Length = 327

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 79/163 (48%), Gaps = 13/163 (7%)
Query: 509 NSFSQENLIGAGMLGSVYRA-QLPDGKLL----AVKKLDKRASSQQKDDEFLELVNNIDR 563
             F +  ++G+G  G+VY+   +P+G+ +    A+K+L + A+S + + E L+    +  
Sbjct: 15  TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKEL-REATSPKANKEILDEAYVMAS 73
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
           + + ++  L G C     +L I +    G L D +    E K+N+     +   +  A+ 
Sbjct: 74  VDNPHVCRLLGICLTSTVQL-ITQLMPFGCLLDYVR---EHKDNIGSQYLLNWCVQIAKG 129
Query: 624 LEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
           + YL +     +VHR+  + N+       V ++D GLA L+ +
Sbjct: 130 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 169

>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp Length = 422

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 22/168 (13%)
Query: 510 SFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKL--DKRASSQQKDDEFLELVNNIDRIRH 566
           S++   +IG G  G VY+A+L D G+L+A+KK+  DKR  +++     L+++  +D   H
Sbjct: 57  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRE-----LQIMRKLD---H 108
Query: 567 ANIVELKGYCAEHGQRL------LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGA 620
            NIV L+ +    G++       L+ +Y      +   H     +       ++ M    
Sbjct: 109 CNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYM-YQL 167
Query: 621 ARALEYLHEICQPPIVHRNFKSANIXXXXXXAV-SVSDCGLAPLISSG 667
            R+L Y+H      I HR+ K  N+      AV  + D G A  +  G
Sbjct: 168 FRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG 212

>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 12/151 (7%)
Query: 516 LIGAGMLGSVYRAQLPD--GKLL--AVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +IG G  G VY   L D  GK +  AVK L+ R +   +  +FL     +    H N++ 
Sbjct: 55  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLN-RITDIGEVSQFLTEGIIMKDFSHPNVLS 113
Query: 572 LKGYCAE-HGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           L G C    G  L++  Y  +G L++ + ++    +N +    I   L  A+ ++YL   
Sbjct: 114 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNE---THNPTVKDLIGFGLQVAKGMKYL--- 167
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
                VHR+  + N        V V+D GLA
Sbjct: 168 ASKKFVHRDLAARNCMLDEKFTVKVADFGLA 198

>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In Complex With Amppnp Length = 334

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 79/163 (48%), Gaps = 13/163 (7%)
Query: 509 NSFSQENLIGAGMLGSVYRA-QLPDGKLL----AVKKLDKRASSQQKDDEFLELVNNIDR 563
             F +  ++G+G  G+VY+   +P+G+ +    A+K+L + A+S + + E L+    +  
Sbjct: 22  TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKEL-REATSPKANKEILDEAYVMAS 80
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
           + + ++  L G C     +L I +    G L D +    E K+N+     +   +  A+ 
Sbjct: 81  VDNPHVCRLLGICLTSTVQL-ITQLMPFGCLLDYVR---EHKDNIGSQYLLNWCVQIAKG 136
Query: 624 LEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
           + YL +     +VHR+  + N+       V ++D GLA L+ +
Sbjct: 137 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 176

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 57/142 (40%), Gaps = 24/142 (16%)
Query: 102 FSSIRVIDLSNNHIGGSIPSILPV--TMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNN 159
            S +R + L  N + G IP  L    T++   L  N  +G IPS L+  T L  +SL+NN
Sbjct: 438 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 497
Query: 160 LLSGEIPDAFQSLTGLIXXXXXXXXXXGELPPSLEXXXXXXXXXXXXXXXXGTLDVLQDL 219
            L+GEIP     L  L           G +P  L                       + L
Sbjct: 498 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD--------------------CRSL 537
Query: 220 PLRDLNIENNLFSGPIPEKMLQ 241
              DLN   NLF+G IP  M +
Sbjct: 538 IWLDLNT--NLFNGTIPAAMFK 557

>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Adp Bound Length = 311

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 9/159 (5%)
Query: 504 LQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDR 563
            Q     + +   +G G  G VY+A+   G+++A+K++   A  +      +  ++ +  
Sbjct: 16  FQGLMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKE 75
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMAL-GAAR 622
           + H NIV L           L++E+      +D+    DE K  L  +++I++ L    R
Sbjct: 76  LHHPNIVSLIDVIHSERCLTLVFEFME----KDLKKVLDENKTGLQ-DSQIKIYLYQLLR 130
Query: 623 ALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
            + + H   Q  I+HR+ K  N+      A+ ++D GLA
Sbjct: 131 GVAHCH---QHRILHRDLKPQNLLINSDGALKLADFGLA 166

>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 25/143 (17%)
Query: 536 LAVKKLDKRASSQQKDDEF--LELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGT 593
           +AVK L   A+ +   D    +E++  I +  H NI+ L G C + G   +I EY S G 
Sbjct: 63  VAVKMLKSDATEKDLSDLISEMEMMKMIGK--HKNIINLLGACTQDGPLYVIVEYASKGN 120
Query: 594 LQDML---------------HSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHR 638
           L++ L               H+ +E    LS    +  A   AR +EYL        +HR
Sbjct: 121 LREYLQARRPPGLEFSFNPSHNPEE---QLSSKDLVSCAYQVARGMEYL---ASKKCIHR 174
Query: 639 NFKSANIXXXXXXAVSVSDCGLA 661
           +  + N+       + ++D GLA
Sbjct: 175 DLAARNVLVTEDNVMKIADFGLA 197

>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site Inhibitor Showing High Selectivity Within The Janus Kinase Family Length = 315

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 29/162 (17%)
Query: 517 IGAGMLGSVYRAQ---LPD--GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +G G  GSV   +   L D  G L+AVK+L      QQ+D  F   +  +  +    IV+
Sbjct: 19  LGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRD--FQREIQILKALHSDFIVK 76
Query: 572 LKGYCAEHGQR--LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
            +G     G++   L+ EY  +G L+D L              R R  L A+R L Y  +
Sbjct: 77  YRGVSYGPGRQSLRLVMEYLPSGCLRDFLQ-------------RHRARLDASRLLLYSSQ 123
Query: 630 ICQ-------PPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           IC+          VHR+  + NI       V ++D GLA L+
Sbjct: 124 ICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLL 165

>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta (Gsk3b) In Complex With Inhibitor 142 Length = 430

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 22/168 (13%)
Query: 510 SFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKL--DKRASSQQKDDEFLELVNNIDRIRH 566
           S++   +IG G  G VY+A+L D G+L+A+KK+  DKR  +++     L+++  +D   H
Sbjct: 55  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRE-----LQIMRKLD---H 106
Query: 567 ANIVELKGYCAEHGQRL------LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGA 620
            NIV L+ +    G++       L+ +Y      +   H     +       ++ M    
Sbjct: 107 CNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYM-YQL 165
Query: 621 ARALEYLHEICQPPIVHRNFKSANIXXXXXXAV-SVSDCGLAPLISSG 667
            R+L Y+H      I HR+ K  N+      AV  + D G A  +  G
Sbjct: 166 FRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG 210

>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor Length = 465

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 22/168 (13%)
Query: 510 SFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKL--DKRASSQQKDDEFLELVNNIDRIRH 566
           S++   +IG G  G VY+A+L D G+L+A+KK+  DKR  +++     L+++  +D   H
Sbjct: 100 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRE-----LQIMRKLD---H 151
Query: 567 ANIVELKGYCAEHGQRL------LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGA 620
            NIV L+ +    G++       L+ +Y      +   H     +       ++ M    
Sbjct: 152 CNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYM-YQL 210
Query: 621 ARALEYLHEICQPPIVHRNFKSANIXXXXXXAV-SVSDCGLAPLISSG 667
            R+L Y+H      I HR+ K  N+      AV  + D G A  +  G
Sbjct: 211 FRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG 255

>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 327

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 29/162 (17%)
Query: 517 IGAGMLGSVYRAQ---LPD--GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +G G  GSV   +   L D  G L+AVK+L      QQ+D  F   +  +  +    IV+
Sbjct: 31  LGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRD--FQREIQILKALHSDFIVK 88
Query: 572 LKGYCAEHGQR--LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
            +G     G++   L+ EY  +G L+D L              R R  L A+R L Y  +
Sbjct: 89  YRGVSYGPGRQSLRLVMEYLPSGCLRDFLQ-------------RHRARLDASRLLLYSSQ 135
Query: 630 ICQ-------PPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           IC+          VHR+  + NI       V ++D GLA L+
Sbjct: 136 ICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLL 177

>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant Length = 327

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 8/172 (4%)
Query: 498 SFTIASLQQYTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLE 556
           S T A  Q +  ++     IG G    V  A+ +  GK +AVK +DK   +     +   
Sbjct: 3   SATSADEQPHIGNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFR 62
Query: 557 LVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRM 616
            V  +  + H NIV+L           L+ EY S G + D L +   +K   +   + R 
Sbjct: 63  EVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEA-RAKFRQ 121
Query: 617 ALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGS 668
            +    A++Y H   Q  IVHR+ K+ N+       + ++D G +   + G+
Sbjct: 122 IVS---AVQYCH---QKFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGN 167

>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In Complex With Amp-Pnp Length = 330

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 79/163 (48%), Gaps = 13/163 (7%)
Query: 509 NSFSQENLIGAGMLGSVYRA-QLPDGKLL----AVKKLDKRASSQQKDDEFLELVNNIDR 563
             F +  ++G+G  G+VY+   +P+G+ +    A+K+L + A+S + + E L+    +  
Sbjct: 18  TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKEL-REATSPKANKEILDEAYVMAS 76
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
           + + ++  L G C     +L I +    G L D +    E K+N+     +   +  A+ 
Sbjct: 77  VDNPHVCRLLGICLTSTVQL-ITQLMPFGCLLDYVR---EHKDNIGSQYLLNWCVQIAKG 132
Query: 624 LEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
           + YL +     +VHR+  + N+       V ++D GLA L+ +
Sbjct: 133 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 172

>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 3,4,5-Trimethoxy Aniline Containing Pyrimidine Length = 309

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 65/160 (40%), Gaps = 18/160 (11%)
Query: 517 IGAGMLGSVYRA------QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           +G G  G V  A      +    + +AVK L + A+  +      EL   I    H N+V
Sbjct: 35  LGRGAFGQVIEADAFGIDKTATXRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVV 94
Query: 571 ELKGYCAEHGQRLL-IYEYCSNGTLQDMLHS--------DDELKNNLSWNTRIRMALGAA 621
            L G C + G  L+ I E+C  G L   L S         D  K+ L+    I  +   A
Sbjct: 95  NLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKDLYKDFLTLEHLIXYSFQVA 154
Query: 622 RALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
           + +E+L        +HR+  + NI       V + D GLA
Sbjct: 155 KGMEFL---ASRKXIHRDLAARNILLSEKNVVKIXDFGLA 191

>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120 Length = 316

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 66/162 (40%), Gaps = 20/162 (12%)
Query: 517 IGAGMLGSVYRA------QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           +G G  G V  A      +    + +AVK L + A+  +      EL   I    H N+V
Sbjct: 37  LGRGAFGQVIEADAFGIDKTATXRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVV 96
Query: 571 ELKGYCAEHGQRLL-IYEYCSNGTLQDMLHS----------DDELKNNLSWNTRIRMALG 619
            L G C + G  L+ I E+C  G L   L S          +D  K+ L+    I  +  
Sbjct: 97  NLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKPEDLYKDFLTLEHLIXYSFQ 156
Query: 620 AARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
            A+ +E+L        +HR+  + NI       V + D GLA
Sbjct: 157 VAKGMEFL---ASRKXIHRDLAARNILLSEKNVVKICDFGLA 195

>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex With A Staurosporine Analogue Length = 290

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 70/162 (43%), Gaps = 29/162 (17%)
Query: 517 IGAGMLGSVYRAQ---LPD--GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +G G  GSV   +   L D  G L+AVK+L      QQ+D  F   +  +  +    IV+
Sbjct: 15  LGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRD--FQREIQILKALHSDFIVK 72
Query: 572 LKG--YCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
            +G  Y     +  L+ EY  +G L+D L              R R  L A+R L Y  +
Sbjct: 73  YRGVSYGPGRPELRLVMEYLPSGCLRDFLQ-------------RHRARLDASRLLLYSSQ 119
Query: 630 ICQ-------PPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
           IC+          VHR+  + NI       V ++D GLA L+
Sbjct: 120 ICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLL 161

>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 13-Jab Length = 327

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 79/163 (48%), Gaps = 13/163 (7%)
Query: 509 NSFSQENLIGAGMLGSVYRA-QLPDGKLL----AVKKLDKRASSQQKDDEFLELVNNIDR 563
             F +  ++G+G  G+VY+   +P+G+ +    A+K+L + A+S + + E L+    +  
Sbjct: 15  TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKEL-REATSPKANKEILDEAYVMAS 73
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
           + + ++  L G C     +L I +    G L D +    E K+N+     +   +  A+ 
Sbjct: 74  VDNPHVCRLLGICLTSTVQL-ITQLMPFGXLLDYVR---EHKDNIGSQYLLNWCVQIAKG 129
Query: 624 LEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
           + YL +     +VHR+  + N+       V ++D GLA L+ +
Sbjct: 130 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 169

>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 12/151 (7%)
Query: 516 LIGAGMLGSVYRAQLPD--GKLL--AVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +IG G  G VY   L D  GK +  AVK L+ R +   +  +FL     +    H N++ 
Sbjct: 37  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLN-RITDIGEVSQFLTEGIIMKDFSHPNVLS 95
Query: 572 LKGYCAE-HGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           L G C    G  L++  Y  +G L++ + ++    +N +    I   L  A+ ++YL   
Sbjct: 96  LLGICLRSEGSPLVVLPYMKHGDLRNFIRNE---THNPTVKDLIGFGLQVAKGMKYL--- 149
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
                VHR+  + N        V V+D GLA
Sbjct: 150 ASKKFVHRDLAARNCMLDEKFTVKVADFGLA 180

>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine Length = 424

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 22/168 (13%)
Query: 510 SFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKL--DKRASSQQKDDEFLELVNNIDRIRH 566
           S++   +IG G  G VY+A+L D G+L+A+KK+  DKR  +++     L+++  +D   H
Sbjct: 59  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRE-----LQIMRKLD---H 110
Query: 567 ANIVELKGYCAEHGQRL------LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGA 620
            NIV L+ +    G++       L+ +Y      +   H     +       ++ M    
Sbjct: 111 CNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYM-YQL 169
Query: 621 ARALEYLHEICQPPIVHRNFKSANIXXXXXXAV-SVSDCGLAPLISSG 667
            R+L Y+H      I HR+ K  N+      AV  + D G A  +  G
Sbjct: 170 FRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG 214

>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase Domain With Erlotinib Length = 337

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 79/163 (48%), Gaps = 13/163 (7%)
Query: 509 NSFSQENLIGAGMLGSVYRA-QLPDGKLL----AVKKLDKRASSQQKDDEFLELVNNIDR 563
             F +  ++G+G  G+VY+   +P+G+ +    A+K+L + A+S + + E L+    +  
Sbjct: 25  TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKEL-REATSPKANKEILDEAYVMAS 83
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
           + + ++  L G C     +L I +    G L D +    E K+N+     +   +  A+ 
Sbjct: 84  VDNPHVCRLLGICLTSTVQL-ITQLMPFGCLLDYVR---EHKDNIGSQYLLNWCVQIAKG 139
Query: 624 LEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
           + YL +     +VHR+  + N+       V ++D GLA L+ +
Sbjct: 140 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 179

>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In Complexed With Inhibitor Length = 414

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 22/168 (13%)
Query: 510 SFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKL--DKRASSQQKDDEFLELVNNIDRIRH 566
           S++   +IG G  G VY+A+L D G+L+A+KK+  DKR  +++     L+++  +D   H
Sbjct: 49  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRE-----LQIMRKLD---H 100
Query: 567 ANIVELKGYCAEHGQRL------LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGA 620
            NIV L+ +    G++       L+ +Y      +   H     +       ++ M    
Sbjct: 101 CNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYM-YQL 159
Query: 621 ARALEYLHEICQPPIVHRNFKSANIXXXXXXAV-SVSDCGLAPLISSG 667
            R+L Y+H      I HR+ K  N+      AV  + D G A  +  G
Sbjct: 160 FRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG 204

>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 72/173 (41%), Gaps = 22/173 (12%)
Query: 517 IGAGMLGSVYRAQ----LP--DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           +G G  G V+ A+    LP  D  L+AVK L + + S ++D  F      +  ++H +IV
Sbjct: 49  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQD--FQREAELLTMLQHQHIV 106
Query: 571 ELKGYCAEHGQRLLIYEYCSNGTLQDMLHS-----------DDELKNNLSWNTRIRMALG 619
              G C E    L+++EY  +G L   L S           +D     L     + +A  
Sbjct: 107 RFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQ 166
Query: 620 AARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQV 672
            A  + YL  +     VHR+  + N        V + D G++  I S    +V
Sbjct: 167 VAAGMVYLAGL---HFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRV 216

>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In Complex With An Mk-2461 Analog With Specificity For The Activated Receptor Length = 307

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 12/151 (7%)
Query: 516 LIGAGMLGSVYRAQLPD--GKLL--AVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +IG G  G VY   L D  GK +  AVK L+ R +   +  +FL     +    H N++ 
Sbjct: 36  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLN-RITDIGEVSQFLTEGIIMKDFSHPNVLS 94
Query: 572 LKGYCAE-HGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           L G C    G  L++  Y  +G L++ + ++    +N +    I   L  A+ ++YL   
Sbjct: 95  LLGICLRSEGSPLVVLPYMKHGDLRNFIRNE---THNPTVKDLIGFGLQVAKGMKYL--- 148
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
                VHR+  + N        V V+D GLA
Sbjct: 149 ASKKFVHRDLAARNCMLDEKFTVKVADFGLA 179

>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor Receptor Length = 333

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 79/163 (48%), Gaps = 13/163 (7%)
Query: 509 NSFSQENLIGAGMLGSVYRA-QLPDGKLL----AVKKLDKRASSQQKDDEFLELVNNIDR 563
             F +  ++G+G  G+VY+   +P+G+ +    A+K+L + A+S + + E L+    +  
Sbjct: 21  TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKEL-REATSPKANKEILDEAYVMAS 79
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
           + + ++  L G C     +L I +    G L D +    E K+N+     +   +  A+ 
Sbjct: 80  VDNPHVCRLLGICLTSTVQL-ITQLMPFGCLLDYVR---EHKDNIGSQYLLNWCVQIAKG 135
Query: 624 LEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
           + YL +     +VHR+  + N+       V ++D GLA L+ +
Sbjct: 136 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 175

>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 12/151 (7%)
Query: 516 LIGAGMLGSVYRAQLPD--GKLL--AVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +IG G  G VY   L D  GK +  AVK L+ R +   +  +FL     +    H N++ 
Sbjct: 56  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLN-RITDIGEVSQFLTEGIIMKDFSHPNVLS 114
Query: 572 LKGYCAE-HGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           L G C    G  L++  Y  +G L++ + ++    +N +    I   L  A+ ++YL   
Sbjct: 115 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNE---THNPTVKDLIGFGLQVAKGMKYL--- 168
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
                VHR+  + N        V V+D GLA
Sbjct: 169 ASKKFVHRDLAARNCMLDEKFTVKVADFGLA 199

>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 12/151 (7%)
Query: 516 LIGAGMLGSVYRAQLPD--GKLL--AVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +IG G  G VY   L D  GK +  AVK L+ R +   +  +FL     +    H N++ 
Sbjct: 29  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLN-RITDIGEVSQFLTEGIIMKDFSHPNVLS 87
Query: 572 LKGYCAE-HGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           L G C    G  L++  Y  +G L++ + ++    +N +    I   L  A+ ++YL   
Sbjct: 88  LLGICLRSEGSPLVVLPYMKHGDLRNFIRNE---THNPTVKDLIGFGLQVAKGMKYL--- 141
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
                VHR+  + N        V V+D GLA
Sbjct: 142 ASKKFVHRDLAARNCMLDEKFTVKVADFGLA 172

>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor Length = 315

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 79/163 (48%), Gaps = 13/163 (7%)
Query: 509 NSFSQENLIGAGMLGSVYRA-QLPDGKLL----AVKKLDKRASSQQKDDEFLELVNNIDR 563
             F +  ++G+G  G+VY+   +P+G+ +    A+K+L + A+S + + E L+    +  
Sbjct: 9   TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKEL-REATSPKANKEILDEAYVMAS 67
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
           + + ++  L G C     +L I +    G L D +    E K+N+     +   +  A+ 
Sbjct: 68  VDNPHVCRLLGICLTSTVQL-ITQLMPFGCLLDYVR---EHKDNIGSQYLLNWCVQIAKG 123
Query: 624 LEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
           + YL +     +VHR+  + N+       V ++D GLA L+ +
Sbjct: 124 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 163

>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 12/151 (7%)
Query: 516 LIGAGMLGSVYRAQLPD--GKLL--AVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +IG G  G VY   L D  GK +  AVK L+ R +   +  +FL     +    H N++ 
Sbjct: 35  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLN-RITDIGEVSQFLTEGIIMKDFSHPNVLS 93
Query: 572 LKGYCAE-HGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           L G C    G  L++  Y  +G L++ + ++    +N +    I   L  A+ ++YL   
Sbjct: 94  LLGICLRSEGSPLVVLPYMKHGDLRNFIRNE---THNPTVKDLIGFGLQVAKGMKYL--- 147
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
                VHR+  + N        V V+D GLA
Sbjct: 148 ASKKFVHRDLAARNCMLDEKFTVKVADFGLA 178

>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide And Inhibitor 7d Length = 350

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 22/168 (13%)
Query: 510 SFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKL--DKRASSQQKDDEFLELVNNIDRIRH 566
           S++   +IG G  G VY+A+L D G+L+A+KK+  DKR  +++     L+++  +D   H
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRE-----LQIMRKLD---H 72
Query: 567 ANIVELKGYCAEHGQRL------LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGA 620
            NIV L+ +    G++       L+ +Y      +   H     +       ++ M    
Sbjct: 73  CNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYM-YQL 131
Query: 621 ARALEYLHEICQPPIVHRNFKSANIXXXXXXAV-SVSDCGLAPLISSG 667
            R+L Y+H      I HR+ K  N+      AV  + D G A  +  G
Sbjct: 132 FRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG 176

>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-3beta Inhibitors Length = 371

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 22/168 (13%)
Query: 510 SFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKL--DKRASSQQKDDEFLELVNNIDRIRH 566
           S++   +IG G  G VY+A+L D G+L+A+KK+  DKR  +++     L+++  +D   H
Sbjct: 33  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRE-----LQIMRKLD---H 84
Query: 567 ANIVELKGYCAEHGQRL------LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGA 620
            NIV L+ +    G++       L+ +Y      +   H     +       ++ M    
Sbjct: 85  CNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYM-YQL 143
Query: 621 ARALEYLHEICQPPIVHRNFKSANIXXXXXXAV-SVSDCGLAPLISSG 667
            R+L Y+H      I HR+ K  N+      AV  + D G A  +  G
Sbjct: 144 FRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG 188

>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An Imidazo[2,1-B]thiazole Inhibitor Length = 327

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 79/163 (48%), Gaps = 13/163 (7%)
Query: 509 NSFSQENLIGAGMLGSVYRA-QLPDGKLL----AVKKLDKRASSQQKDDEFLELVNNIDR 563
             F +  ++G+G  G+VY+   +P+G+ +    A+K+L + A+S + + E L+    +  
Sbjct: 15  TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKEL-REATSPKANKEILDEAYVMAS 73
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
           + + ++  L G C     +L I +    G L D +    E K+N+     +   +  A+ 
Sbjct: 74  VDNPHVCRLLGICLTSTVQL-ITQLMPFGCLLDYVR---EHKDNIGSQYLLNWCVQIAKG 129
Query: 624 LEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
           + YL +     +VHR+  + N+       V ++D GLA L+ +
Sbjct: 130 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 169

>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With Frattide Peptide Length = 378

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 22/168 (13%)
Query: 510 SFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKL--DKRASSQQKDDEFLELVNNIDRIRH 566
           S++   +IG G  G VY+A+L D G+L+A+KK+  DKR  +++     L+++  +D   H
Sbjct: 40  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRE-----LQIMRKLD---H 91
Query: 567 ANIVELKGYCAEHGQRL------LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGA 620
            NIV L+ +    G++       L+ +Y      +   H     +       ++ M    
Sbjct: 92  CNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYM-YQL 150
Query: 621 ARALEYLHEICQPPIVHRNFKSANIXXXXXXAV-SVSDCGLAPLISSG 667
            R+L Y+H      I HR+ K  N+      AV  + D G A  +  G
Sbjct: 151 FRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG 195

>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective Gsk-3 Inhibitors Length = 367

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 22/168 (13%)
Query: 510 SFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKL--DKRASSQQKDDEFLELVNNIDRIRH 566
           S++   +IG G  G VY+A+L D G+L+A+KK+  DKR  +++     L+++  +D   H
Sbjct: 29  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRE-----LQIMRKLD---H 80
Query: 567 ANIVELKGYCAEHGQRL------LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGA 620
            NIV L+ +    G++       L+ +Y      +   H     +       ++ M    
Sbjct: 81  CNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYM-YQL 139
Query: 621 ARALEYLHEICQPPIVHRNFKSANIXXXXXXAV-SVSDCGLAPLISSG 667
            R+L Y+H      I HR+ K  N+      AV  + D G A  +  G
Sbjct: 140 FRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG 184

>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And Nck-Interacting Kinase With Wee1chk1 Inhibitor Length = 326

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 79/184 (42%), Gaps = 16/184 (8%)
Query: 486 STKTAKPFTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKR 544
           S  +  P  +     +++L+     F    L+G G  G VY+ + +  G+L A+K +D  
Sbjct: 1   SMASDSPARSLDEIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMD-- 58
Query: 545 ASSQQKDDEFLELVNNIDRI-RHANIVELKGYCAEHG------QRLLIYEYCSNGTLQDM 597
             +  +++E  + +N + +   H NI    G   +        Q  L+ E+C  G++ D+
Sbjct: 59  -VTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDL 117
Query: 598 LHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSD 657
           + +         W   I   +   R L +LH   Q  ++HR+ K  N+       V + D
Sbjct: 118 IKNTKGNTLKEEWIAYICREI--LRGLSHLH---QHKVIHRDIKGQNVLLTENAEVKLVD 172
Query: 658 CGLA 661
            G++
Sbjct: 173 FGVS 176

>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Benzoimidazol Inhibitor Length = 372

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 22/168 (13%)
Query: 510 SFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKL--DKRASSQQKDDEFLELVNNIDRIRH 566
           S++   +IG G  G VY+A+L D G+L+A+KK+  DKR  +++     L+++  +D   H
Sbjct: 34  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRE-----LQIMRKLD---H 85
Query: 567 ANIVELKGYCAEHGQRL------LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGA 620
            NIV L+ +    G++       L+ +Y      +   H     +       ++ M    
Sbjct: 86  CNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYM-YQL 144
Query: 621 ARALEYLHEICQPPIVHRNFKSANIXXXXXXAV-SVSDCGLAPLISSG 667
            R+L Y+H      I HR+ K  N+      AV  + D G A  +  G
Sbjct: 145 FRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG 189

>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor That Attenuates Hyperactivity In Clock Mutant Mice Length = 350

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 22/168 (13%)
Query: 510 SFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKL--DKRASSQQKDDEFLELVNNIDRIRH 566
           S++   +IG G  G VY+A+L D G+L+A+KK+  DKR  +++     L+++  +D   H
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRE-----LQIMRKLD---H 72
Query: 567 ANIVELKGYCAEHGQRL------LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGA 620
            NIV L+ +    G++       L+ +Y      +   H     +       ++ M    
Sbjct: 73  CNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYM-YQL 131
Query: 621 ARALEYLHEICQPPIVHRNFKSANIXXXXXXAV-SVSDCGLAPLISSG 667
            R+L Y+H      I HR+ K  N+      AV  + D G A  +  G
Sbjct: 132 FRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG 176

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 9/149 (6%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +G G  G V+         +A+K L     S    + FLE    + +++H  +V+L    
Sbjct: 17  LGNGQFGEVWMGTWNGNTKVAIKTLKPGTMS---PESFLEEAQIMKKLKHDKLVQLYAVV 73
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
           +E     ++ EY + G+L D L   +     L     + MA   A  + Y+  +     +
Sbjct: 74  SEE-PIYIVTEYMNKGSLLDFLKDGE--GRALKLPNLVDMAAQVAAGMAYIERMN---YI 127
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
           HR+ +SANI         ++D GLA LI 
Sbjct: 128 HRDLRSANILVGNGLICKIADFGLARLIE 156

>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With 3-Indolyl-4- Arylmaleimide Inhibitor Length = 391

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 22/168 (13%)
Query: 510 SFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKL--DKRASSQQKDDEFLELVNNIDRIRH 566
           S++   +IG G  G VY+A+L D G+L+A+KK+  DKR  +++     L+++  +D   H
Sbjct: 26  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRE-----LQIMRKLD---H 77
Query: 567 ANIVELKGYCAEHGQRL------LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGA 620
            NIV L+ +    G++       L+ +Y      +   H     +       ++ M    
Sbjct: 78  CNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYM-YQL 136
Query: 621 ARALEYLHEICQPPIVHRNFKSANIXXXXXXAV-SVSDCGLAPLISSG 667
            R+L Y+H      I HR+ K  N+      AV  + D G A  +  G
Sbjct: 137 FRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG 181

>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 302

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 25/144 (17%)
Query: 533 GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQR--LLIYEYCS 590
           G+++AVK L      Q +   + + ++ +  + H +I++ KG C + G++   L+ EY  
Sbjct: 43  GEMVAVKALKADCGPQHRSG-WKQEIDILRTLYHEHIIKYKGCCEDQGEKSLQLVMEYVP 101
Query: 591 NGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQ-------PPIVHRNFKSA 643
            G+L+D L                R ++G A+ L +  +IC+          +HRN  + 
Sbjct: 102 LGSLRDYL---------------PRHSIGLAQLLLFAQQICEGMAYLHAQHYIHRNLAAR 146
Query: 644 NIXXXXXXAVSVSDCGLAPLISSG 667
           N+       V + D GLA  +  G
Sbjct: 147 NVLLDNDRLVKIGDFGLAKAVPEG 170

>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex Length = 349

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 22/168 (13%)
Query: 510 SFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKL--DKRASSQQKDDEFLELVNNIDRIRH 566
           S++   +IG G  G VY+A+L D G+L+A+KK+  DKR  +++     L+++  +D   H
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRE-----LQIMRKLD---H 72
Query: 567 ANIVELKGYCAEHGQRL------LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGA 620
            NIV L+ +    G++       L+ +Y      +   H     +       ++ M    
Sbjct: 73  CNIVRLRYFFYSSGEKKDVVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYM-YQL 131
Query: 621 ARALEYLHEICQPPIVHRNFKSANIXXXXXXAV-SVSDCGLAPLISSG 667
            R+L Y+H      I HR+ K  N+      AV  + D G A  +  G
Sbjct: 132 FRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG 176

>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis- (Indole)maleimide Pyridinophane Inhibitor Length = 352

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 22/168 (13%)
Query: 510 SFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKL--DKRASSQQKDDEFLELVNNIDRIRH 566
           S++   +IG G  G VY+A+L D G+L+A+KK+  DKR  +++     L+++  +D   H
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRE-----LQIMRKLD---H 72
Query: 567 ANIVELKGYCAEHGQRL------LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGA 620
            NIV L+ +    G++       L+ +Y      +   H     +       ++ M    
Sbjct: 73  CNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYM-YQL 131
Query: 621 ARALEYLHEICQPPIVHRNFKSANIXXXXXXAV-SVSDCGLAPLISSG 667
            R+L Y+H      I HR+ K  N+      AV  + D G A  +  G
Sbjct: 132 FRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG 176

>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: T208aS212A INACTIVE DOUBLE MUTANT Length = 327

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 8/172 (4%)
Query: 498 SFTIASLQQYTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLE 556
           S T A  Q +  ++     IG G    V  A+ +  GK +AVK +DK   +     +   
Sbjct: 3   SATSADEQPHIGNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFR 62
Query: 557 LVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRM 616
            V  +  + H NIV+L           L+ EY S G + D L +   +K   +   + R 
Sbjct: 63  EVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEA-RAKFRQ 121
Query: 617 ALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGS 668
            +    A++Y H   Q  IVHR+ K+ N+       + ++D G +   + G+
Sbjct: 122 IVS---AVQYCH---QKFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGN 167

>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazole- Thiophene Inhibitor Length = 302

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 25/144 (17%)
Query: 533 GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQR--LLIYEYCS 590
           G+++AVK L      Q +   + + ++ +  + H +I++ KG C + G++   L+ EY  
Sbjct: 43  GEMVAVKALKADCGPQHRSG-WKQEIDILRTLYHEHIIKYKGCCEDQGEKSLQLVMEYVP 101
Query: 591 NGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQ-------PPIVHRNFKSA 643
            G+L+D L                R ++G A+ L +  +IC+          +HRN  + 
Sbjct: 102 LGSLRDYL---------------PRHSIGLAQLLLFAQQICEGMAYLHSQHYIHRNLAAR 146
Query: 644 NIXXXXXXAVSVSDCGLAPLISSG 667
           N+       V + D GLA  +  G
Sbjct: 147 NVLLDNDRLVKIGDFGLAKAVPEG 170

>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex Length = 353

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 22/168 (13%)
Query: 510 SFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKL--DKRASSQQKDDEFLELVNNIDRIRH 566
           S++   +IG G  G VY+A+L D G+L+A+KK+  DKR  +++     L+++  +D   H
Sbjct: 25  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRE-----LQIMRKLD---H 76
Query: 567 ANIVELKGYCAEHGQRL------LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGA 620
            NIV L+ +    G++       L+ +Y      +   H     +       ++ M    
Sbjct: 77  CNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYM-YQL 135
Query: 621 ARALEYLHEICQPPIVHRNFKSANIXXXXXXAV-SVSDCGLAPLISSG 667
            R+L Y+H      I HR+ K  N+      AV  + D G A  +  G
Sbjct: 136 FRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG 180

>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 21/170 (12%)
Query: 508 TNSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEF-----LELVNNI 561
           T+ +     IG G  G+VY+A+ P  G  +A+K +  R  + ++         + L+  +
Sbjct: 3   TSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSV--RVPNGEEGLPISTVREVALLRRL 60
Query: 562 DRIRHANIVELKGYCA-----EHGQRLLIYEYCSNGTLQDM-LHSDDELKNNLSWNTRIR 615
           +   H N+V L   CA        +  L++E+      QD+  + D      L   T   
Sbjct: 61  EAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVD----QDLRTYLDKAPPPGLPAETIKD 116
Query: 616 MALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
           +     R L++LH  C   IVHR+ K  NI       V ++D GLA + S
Sbjct: 117 LMRQFLRGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYS 163

>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound Length = 279

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 5/154 (3%)
Query: 517 IGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           IG G  G   + +   DGK+L  K+LD  + ++ +    +  VN +  ++H NIV     
Sbjct: 14  IGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDR 73
Query: 576 CAEHGQRLL--IYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQ- 632
             +     L  + EYC  G L  ++    + +  L     +R+      AL+  H     
Sbjct: 74  IIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDG 133
Query: 633 -PPIVHRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
              ++HR+ K AN+       V + D GLA +++
Sbjct: 134 GHTVLHRDLKPANVFLDGKQNVKLGDFGLARILN 167

>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 72/173 (41%), Gaps = 22/173 (12%)
Query: 517 IGAGMLGSVYRAQ----LP--DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           +G G  G V+ A+    LP  D  L+AVK L + + S ++D  F      +  ++H +IV
Sbjct: 20  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQD--FQREAELLTMLQHQHIV 77
Query: 571 ELKGYCAEHGQRLLIYEYCSNGTLQDMLHS-----------DDELKNNLSWNTRIRMALG 619
              G C E    L+++EY  +G L   L S           +D     L     + +A  
Sbjct: 78  RFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQ 137
Query: 620 AARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQV 672
            A  + YL  +     VHR+  + N        V + D G++  I S    +V
Sbjct: 138 VAAGMVYLAGL---HFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRV 187

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 57/142 (40%), Gaps = 24/142 (16%)
Query: 102 FSSIRVIDLSNNHIGGSIPSILPV--TMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNN 159
            S +R + L  N + G IP  L    T++   L  N  +G IPS L+  T L  +SL+NN
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500
Query: 160 LLSGEIPDAFQSLTGLIXXXXXXXXXXGELPPSLEXXXXXXXXXXXXXXXXGTLDVLQDL 219
            L+GEIP     L  L           G +P  L                       + L
Sbjct: 501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD--------------------CRSL 540
Query: 220 PLRDLNIENNLFSGPIPEKMLQ 241
              DLN   NLF+G IP  M +
Sbjct: 541 IWLDLNT--NLFNGTIPAAMFK 560

>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase 3beta In Complex With An Inhibitor Length = 350

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 22/168 (13%)
Query: 510 SFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKL--DKRASSQQKDDEFLELVNNIDRIRH 566
           S++   +IG G  G VY+A+L D G+L+A+KK+  DKR  +++     L+++  +D   H
Sbjct: 22  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRE-----LQIMRKLD---H 73
Query: 567 ANIVELKGYCAEHGQRL------LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGA 620
            NIV L+ +    G++       L+ +Y      +   H     +       ++ M    
Sbjct: 74  CNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYM-YQL 132
Query: 621 ARALEYLHEICQPPIVHRNFKSANIXXXXXXAV-SVSDCGLAPLISSG 667
            R+L Y+H      I HR+ K  N+      AV  + D G A  +  G
Sbjct: 133 FRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG 177

>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Wild Type Length = 327

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 8/172 (4%)
Query: 498 SFTIASLQQYTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLE 556
           S T A  Q +  ++     IG G    V  A+ +  GK +AVK +DK   +     +   
Sbjct: 3   SATSADEQPHIGNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFR 62
Query: 557 LVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRM 616
            V  +  + H NIV+L           L+ EY S G + D L +   +K   +   + R 
Sbjct: 63  EVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEA-RAKFRQ 121
Query: 617 ALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGS 668
            +    A++Y H   Q  IVHR+ K+ N+       + ++D G +   + G+
Sbjct: 122 IVS---AVQYCH---QKFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGN 167

>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 21/170 (12%)
Query: 508 TNSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEF-----LELVNNI 561
           T+ +     IG G  G+VY+A+ P  G  +A+K +  R  + ++         + L+  +
Sbjct: 3   TSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSV--RVPNGEEGLPISTVREVALLRRL 60
Query: 562 DRIRHANIVELKGYCA-----EHGQRLLIYEYCSNGTLQDM-LHSDDELKNNLSWNTRIR 615
           +   H N+V L   CA        +  L++E+      QD+  + D      L   T   
Sbjct: 61  EAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVD----QDLRTYLDKAPPPGLPAETIKD 116
Query: 616 MALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
           +     R L++LH  C   IVHR+ K  NI       V ++D GLA + S
Sbjct: 117 LMRQFLRGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYS 163

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 75/155 (48%), Gaps = 11/155 (7%)
Query: 515 NLIGAGMLGSVYRA-QLPDGKLLAVK---KLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
            ++G+G  G+VY+   +P+G+ + +    K+    +  + + EF++    +  + H ++V
Sbjct: 21  KVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLV 80
Query: 571 ELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
            L G C     +L + +   +G L + +H   E K+N+     +   +  A+ + YL E 
Sbjct: 81  RLLGVCLSPTIQL-VTQLMPHGCLLEYVH---EHKDNIGSQLLLNWCVQIAKGMMYLEE- 135
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
               +VHR+  + N+       V ++D GLA L+ 
Sbjct: 136 --RRLVHRDLAARNVLVKSPNHVKITDFGLARLLE 168

>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast Growth Factor Receptor 1 In Complex With 5-(2-Thienyl) Nicotinic Acid Length = 317

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 25/143 (17%)
Query: 536 LAVKKLDKRASSQQKDDEF--LELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGT 593
           +AVK L   A+ +   D    +E++  I +  H NI+ L G C + G   +I EY S G 
Sbjct: 63  VAVKMLKSDATEKDLSDLISEMEMMKMIGK--HKNIINLLGACTQDGPLYVIVEYASKGN 120
Query: 594 LQDML---------------HSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHR 638
           L++ L               H+ +E    LS    +  A   AR +EYL        +HR
Sbjct: 121 LREYLQARRPPGLEYSYNPSHNPEE---QLSSKDLVSCAYQVARGMEYL---ASKKCIHR 174
Query: 639 NFKSANIXXXXXXAVSVSDCGLA 661
           +  + N+       + ++D GLA
Sbjct: 175 DLAARNVLVTEDNVMKIADFGLA 197

>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 12/151 (7%)
Query: 516 LIGAGMLGSVYRAQLPD--GKLL--AVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +IG G  G VY   L D  GK +  AVK L+ R +   +  +FL     +    H N++ 
Sbjct: 34  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLN-RITDIGEVSQFLTEGIIMKDFSHPNVLS 92
Query: 572 LKGYCAE-HGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           L G C    G  L++  Y  +G L++ + ++    +N +    I   L  A+ ++YL   
Sbjct: 93  LLGICLRSEGSPLVVLPYMKHGDLRNFIRNE---THNPTVKDLIGFGLQVAKGMKYL--- 146
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
                VHR+  + N        V V+D GLA
Sbjct: 147 ASKKFVHRDLAARNCMLDEKFTVKVADFGLA 177

>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 66/155 (42%), Gaps = 23/155 (14%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +G+G  G V   +      +AVK + + + S   +DEF +    + ++ H  +V+  G C
Sbjct: 16  LGSGQFGVVKLGKWKGQYDVAVKMIKEGSMS---EDEFFQEAQTMMKLSHPKLVKFYGVC 72
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQ---- 632
           ++     ++ EY SNG L + L S  +              L  ++ LE  +++C+    
Sbjct: 73  SKEYPIYIVTEYISNGCLLNYLRSHGK-------------GLEPSQLLEMCYDVCEGMAF 119
Query: 633 ---PPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
                 +HR+  + N        V VSD G+   +
Sbjct: 120 LESHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYV 154

>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Imidazopyridine Inhibitor Length = 382

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 22/168 (13%)
Query: 510 SFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKL--DKRASSQQKDDEFLELVNNIDRIRH 566
           S++   +IG G  G VY+A+L D G+L+A+KK+  DKR  +++     L+++  +D   H
Sbjct: 33  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRE-----LQIMRKLD---H 84
Query: 567 ANIVELKGYCAEHGQRL------LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGA 620
            NIV L+ +    G++       L+ +Y      +   H     +       ++ M    
Sbjct: 85  CNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYM-YQL 143
Query: 621 ARALEYLHEICQPPIVHRNFKSANIXXXXXXAV-SVSDCGLAPLISSG 667
            R+L Y+H      I HR+ K  N+      AV  + D G A  +  G
Sbjct: 144 FRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG 188

>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 12/151 (7%)
Query: 516 LIGAGMLGSVYRAQLPD--GKLL--AVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +IG G  G VY   L D  GK +  AVK L+ R +   +  +FL     +    H N++ 
Sbjct: 36  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLN-RITDIGEVSQFLTEGIIMKDFSHPNVLS 94
Query: 572 LKGYCAE-HGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           L G C    G  L++  Y  +G L++ + ++    +N +    I   L  A+ ++YL   
Sbjct: 95  LLGICLRSEGSPLVVLPYMKHGDLRNFIRNE---THNPTVKDLIGFGLQVAKGMKYL--- 148
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
                VHR+  + N        V V+D GLA
Sbjct: 149 ASKKFVHRDLAARNCMLDEKFTVKVADFGLA 179

>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 21/170 (12%)
Query: 508 TNSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEF-----LELVNNI 561
           T+ +     IG G  G+VY+A+ P  G  +A+K +  R  + ++         + L+  +
Sbjct: 3   TSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSV--RVPNGEEGLPISTVREVALLRRL 60
Query: 562 DRIRHANIVELKGYCA-----EHGQRLLIYEYCSNGTLQDM-LHSDDELKNNLSWNTRIR 615
           +   H N+V L   CA        +  L++E+      QD+  + D      L   T   
Sbjct: 61  EAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVD----QDLRTYLDKAPPPGLPAETIKD 116
Query: 616 MALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
           +     R L++LH  C   IVHR+ K  NI       V ++D GLA + S
Sbjct: 117 LMRQFLRGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYS 163

>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 72/173 (41%), Gaps = 22/173 (12%)
Query: 517 IGAGMLGSVYRAQ----LP--DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           +G G  G V+ A+    LP  D  L+AVK L + + S ++D  F      +  ++H +IV
Sbjct: 26  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQD--FQREAELLTMLQHQHIV 83
Query: 571 ELKGYCAEHGQRLLIYEYCSNGTLQDMLHS-----------DDELKNNLSWNTRIRMALG 619
              G C E    L+++EY  +G L   L S           +D     L     + +A  
Sbjct: 84  RFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQ 143
Query: 620 AARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQV 672
            A  + YL  +     VHR+  + N        V + D G++  I S    +V
Sbjct: 144 VAAGMVYLAGL---HFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRV 193

>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 12/151 (7%)
Query: 516 LIGAGMLGSVYRAQLPD--GKLL--AVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +IG G  G VY   L D  GK +  AVK L+ R +   +  +FL     +    H N++ 
Sbjct: 37  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLN-RITDIGEVSQFLTEGIIMKDFSHPNVLS 95
Query: 572 LKGYCAE-HGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           L G C    G  L++  Y  +G L++ + ++    +N +    I   L  A+ ++YL   
Sbjct: 96  LLGICLRSEGSPLVVLPYMKHGDLRNFIRNE---THNPTVKDLIGFGLQVAKGMKYL--- 149
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
                VHR+  + N        V V+D GLA
Sbjct: 150 ASKKFVHRDLAARNCMLDEKFTVKVADFGLA 180

>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fibroblast Growth Factor Receptor 1 Length = 310

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 25/143 (17%)
Query: 536 LAVKKLDKRASSQQKDDEF--LELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGT 593
           +AVK L   A+ +   D    +E++  I +  H NI+ L G C + G   +I EY S G 
Sbjct: 56  VAVKMLKSDATEKDLSDLISEMEMMKMIGK--HKNIINLLGACTQDGPLYVIVEYASKGN 113
Query: 594 LQDML---------------HSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHR 638
           L++ L               H+ +E    LS    +  A   AR +EYL        +HR
Sbjct: 114 LREYLQARRPPGLEYSYNPSHNPEE---QLSSKDLVSCAYQVARGMEYL---ASKKCIHR 167
Query: 639 NFKSANIXXXXXXAVSVSDCGLA 661
           +  + N+       + ++D GLA
Sbjct: 168 DLAARNVLVTEDNVMKIADFGLA 190

>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand Length = 279

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 5/154 (3%)
Query: 517 IGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           IG G  G   + +   DGK+L  K+LD  + ++ +    +  VN +  ++H NIV     
Sbjct: 14  IGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDR 73
Query: 576 CAEHGQRLL--IYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQ- 632
             +     L  + EYC  G L  ++    + +  L     +R+      AL+  H     
Sbjct: 74  IIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDG 133
Query: 633 -PPIVHRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
              ++HR+ K AN+       V + D GLA +++
Sbjct: 134 GHTVLHRDLKPANVFLDGKQNVKLGDFGLARILN 167

>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 12/151 (7%)
Query: 516 LIGAGMLGSVYRAQLPD--GKLL--AVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +IG G  G VY   L D  GK +  AVK L+ R +   +  +FL     +    H N++ 
Sbjct: 32  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLN-RITDIGEVSQFLTEGIIMKDFSHPNVLS 90
Query: 572 LKGYCAE-HGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           L G C    G  L++  Y  +G L++ + ++    +N +    I   L  A+ ++YL   
Sbjct: 91  LLGICLRSEGSPLVVLPYMKHGDLRNFIRNE---THNPTVKDLIGFGLQVAKGMKYL--- 144
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
                VHR+  + N        V V+D GLA
Sbjct: 145 ASKKFVHRDLAARNCMLDEKFTVKVADFGLA 175

>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor Receptor 1 Kinase Domain In Complex With Compound 1 Length = 309

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 25/143 (17%)
Query: 536 LAVKKLDKRASSQQKDDEF--LELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGT 593
           +AVK L   A+ +   D    +E++  I +  H NI+ L G C + G   +I EY S G 
Sbjct: 55  VAVKMLKSDATEKDLSDLISEMEMMKMIGK--HKNIINLLGACTQDGPLYVIVEYASKGN 112
Query: 594 LQDML---------------HSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHR 638
           L++ L               H+ +E    LS    +  A   AR +EYL        +HR
Sbjct: 113 LREYLQARRPPGLEYSYNPSHNPEE---QLSSKDLVSCAYQVARGMEYL---ASKKCIHR 166
Query: 639 NFKSANIXXXXXXAVSVSDCGLA 661
           +  + N+       + ++D GLA
Sbjct: 167 DLAARNVLVTEDNVMKIADFGLA 189

>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase In Complex With Arq 069 Length = 306

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 25/143 (17%)
Query: 536 LAVKKLDKRASSQQKDDEF--LELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGT 593
           +AVK L   A+ +   D    +E++  I +  H NI+ L G C + G   +I EY S G 
Sbjct: 52  VAVKMLKSDATEKDLSDLISEMEMMKMIGK--HKNIINLLGACTQDGPLYVIVEYASKGN 109
Query: 594 LQDML---------------HSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHR 638
           L++ L               H+ +E    LS    +  A   AR +EYL        +HR
Sbjct: 110 LREYLQARRPPGLEYSYNPSHNPEE---QLSSKDLVSCAYQVARGMEYL---ASKKCIHR 163
Query: 639 NFKSANIXXXXXXAVSVSDCGLA 661
           +  + N+       + ++D GLA
Sbjct: 164 DLAARNVLVTEDNVMKIADFGLA 186

>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662 Length = 279

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 5/154 (3%)
Query: 517 IGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           IG G  G   + +   DGK+L  K+LD  + ++ +    +  VN +  ++H NIV     
Sbjct: 14  IGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDR 73
Query: 576 CAEHGQRLL--IYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQ- 632
             +     L  + EYC  G L  ++    + +  L     +R+      AL+  H     
Sbjct: 74  IIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDG 133
Query: 633 -PPIVHRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
              ++HR+ K AN+       V + D GLA +++
Sbjct: 134 GHTVLHRDLKPANVFLDGKQNVKLGDFGLARILN 167

>pdb|3LL6|A Chain A, Crystal Structure Of The Human Cyclin G Associated Kinase (gak) Length = 337

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 79/163 (48%), Gaps = 21/163 (12%)
Query: 516 LIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR-HANIVELK 573
           ++  G    VY AQ +  G+  A+K+L   ++ ++K+   ++ V  + ++  H NIV+  
Sbjct: 35  VLAEGGFAFVYEAQDVGSGREYALKRL--LSNEEEKNRAIIQEVCFMKKLSGHPNIVQ-- 90
Query: 574 GYCAE-----------HGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR 622
            +C+              + LL+ E C  G L + L    E +  LS +T +++     R
Sbjct: 91  -FCSAASIGKEESDTGQAEFLLLTELC-KGQLVEFL-KKMESRGPLSCDTVLKIFYQTCR 147
Query: 623 ALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
           A++++H   +PPI+HR+ K  N+       + + D G A  IS
Sbjct: 148 AVQHMHRQ-KPPIIHRDLKVENLLLSNQGTIKLCDFGSATTIS 189

>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 25/143 (17%)
Query: 536 LAVKKLDKRASSQQKDDEF--LELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGT 593
           +AVK L   A+ +   D    +E++  I +  H NI+ L G C + G   +I EY S G 
Sbjct: 63  VAVKMLKSDATEKDLSDLISEMEMMKMIGK--HKNIINLLGACTQDGPLYVIVEYASKGN 120
Query: 594 LQDML---------------HSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHR 638
           L++ L               H+ +E    LS    +  A   AR +EYL        +HR
Sbjct: 121 LREYLQARRPPGLEYCYNPSHNPEE---QLSSKDLVSCAYQVARGMEYL---ASKKCIHR 174
Query: 639 NFKSANIXXXXXXAVSVSDCGLA 661
           +  + N+       + ++D GLA
Sbjct: 175 DLAARNVLVTEDNVMKIADFGLA 197

>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3 Length = 308

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 72/173 (41%), Gaps = 24/173 (13%)
Query: 508 TNSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLE--------LV 558
           T+ +     IG G  G+VY+A+ P  G  +A+K +  R  +       L         L+
Sbjct: 8   TSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSV--RVPNGGGGGGGLPISTVREVALL 65
Query: 559 NNIDRIRHANIVELKGYCA-----EHGQRLLIYEYCSNGTLQDM-LHSDDELKNNLSWNT 612
             ++   H N+V L   CA        +  L++E+      QD+  + D      L   T
Sbjct: 66  RRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVD----QDLRTYLDKAPPPGLPAET 121
Query: 613 RIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
              +     R L++LH  C   IVHR+ K  NI       V ++D GLA + S
Sbjct: 122 IKDLMRQFLRGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYS 171

>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain Length = 290

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 9/164 (5%)
Query: 509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHA 567
           + +  + +IG+G    V  A   P  + +A+K+++     Q   DE L+ +  + +  H 
Sbjct: 10  DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLE-KCQTSMDELLKEIQAMSQCHHP 68
Query: 568 NIVELKGYCAEHGQRLLIYEYCSNGTLQDMLH---SDDELKNNLSWNTRIRMALGAA-RA 623
           NIV          +  L+ +  S G++ D++    +  E K+ +   + I   L      
Sbjct: 69  NIVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEG 128
Query: 624 LEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSG 667
           LEYLH+  Q   +HR+ K+ NI      +V ++D G++  +++G
Sbjct: 129 LEYLHKNGQ---IHRDVKAGNILLGEDGSVQIADFGVSAFLATG 169

>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate Ligand Complex Length = 288

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 7/145 (4%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           IG G  G VY+AQ   G+  A+KK+      +      +  ++ +  ++H+NIV+L    
Sbjct: 10  IGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVI 69
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
               + +L++E+      QD+    D  +  L   T     L     + Y H+     ++
Sbjct: 70  HTKKRLVLVFEHLD----QDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHD---RRVL 122
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLA 661
           HR+ K  N+       + ++D GLA
Sbjct: 123 HRDLKPQNLLINREGELKIADFGLA 147

>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3- Methoxybenzyl)-7-Azaindole Length = 302

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 25/143 (17%)
Query: 536 LAVKKLDKRASSQQKDDEF--LELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGT 593
           +AVK L   A+ +   D    +E++  I +  H NI+ L G C + G   +I EY S G 
Sbjct: 48  VAVKMLKSDATEKDLSDLISEMEMMKMIGK--HKNIINLLGACTQDGPLYVIVEYASKGN 105
Query: 594 LQDML---------------HSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHR 638
           L++ L               H+ +E    LS    +  A   AR +EYL        +HR
Sbjct: 106 LREYLQARRPPGLEYCYNPSHNPEE---QLSSKDLVSCAYQVARGMEYL---ASKKCIHR 159
Query: 639 NFKSANIXXXXXXAVSVSDCGLA 661
           +  + N+       + ++D GLA
Sbjct: 160 DLAARNVLVTEDNVMKIADFGLA 182

>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5 Length = 288

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 7/145 (4%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           IG G  G VY+AQ   G+  A+KK+      +      +  ++ +  ++H+NIV+L    
Sbjct: 10  IGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVI 69
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
               + +L++E+      QD+    D  +  L   T     L     + Y H+     ++
Sbjct: 70  HTKKRLVLVFEHLD----QDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHD---RRVL 122
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLA 661
           HR+ K  N+       + ++D GLA
Sbjct: 123 HRDLKPQNLLINREGELKIADFGLA 147

>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target Length = 303

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 9/164 (5%)
Query: 509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHA 567
           + +  + +IG+G    V  A   P  + +A+K+++     Q   DE L+ +  + +  H 
Sbjct: 15  DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLE-KCQTSMDELLKEIQAMSQCHHP 73
Query: 568 NIVELKGYCAEHGQRLLIYEYCSNGTLQDMLH---SDDELKNNLSWNTRIRMALGAA-RA 623
           NIV          +  L+ +  S G++ D++    +  E K+ +   + I   L      
Sbjct: 74  NIVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEG 133
Query: 624 LEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSG 667
           LEYLH+  Q   +HR+ K+ NI      +V ++D G++  +++G
Sbjct: 134 LEYLHKNGQ---IHRDVKAGNILLGEDGSVQIADFGVSAFLATG 174

>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5 Length = 288

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 7/145 (4%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           IG G  G VY+AQ   G+  A+KK+      +      +  ++ +  ++H+NIV+L    
Sbjct: 10  IGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVI 69
Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
               + +L++E+      QD+    D  +  L   T     L     + Y H+     ++
Sbjct: 70  HTKKRLVLVFEHLD----QDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHD---RRVL 122
Query: 637 HRNFKSANIXXXXXXAVSVSDCGLA 661
           HR+ K  N+       + ++D GLA
Sbjct: 123 HRDLKPQNLLINREGELKIADFGLA 147

>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase Domain And A Mig6 Peptide Length = 324

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 78/163 (47%), Gaps = 13/163 (7%)
Query: 509 NSFSQENLIGAGMLGSVYRA-QLPDGKLL----AVKKLDKRASSQQKDDEFLELVNNIDR 563
             F +  ++G+G  G+VY+   +P+G+ +    A+K+L + A+S + + E L+    +  
Sbjct: 12  TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKEL-REATSPKANKEILDEAYVMAS 70
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
           + + ++  L G C     +L I +    G L D +    E K+N+     +   +  A  
Sbjct: 71  VDNPHVCRLLGICLTSTVQL-ITQLMPFGCLLDYVR---EHKDNIGSQYLLNWCVQIAEG 126
Query: 624 LEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
           + YL +     +VHR+  + N+       V ++D GLA L+ +
Sbjct: 127 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 166

>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Pyrrolotriazine Based Inhibitor Length = 373

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 12/151 (7%)
Query: 516 LIGAGMLGSVYRAQLPD--GKLL--AVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +IG G  G VY   L D  GK +  AVK L+ R +   +  +FL     +    H N++ 
Sbjct: 96  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLN-RITDIGEVSQFLTEGIIMKDFSHPNVLS 154
Query: 572 LKGYCAE-HGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           L G C    G  L++  Y  +G L++ + ++    +N +    I   L  A+ +++L   
Sbjct: 155 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNE---THNPTVKDLIGFGLQVAKGMKFL--- 208
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
                VHR+  + N        V V+D GLA
Sbjct: 209 ASKKFVHRDLAARNCMLDEKFTVKVADFGLA 239

>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 3,4,5-Trimethoxy Aniline Containing Pyrimidine Length = 309

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 65/160 (40%), Gaps = 18/160 (11%)
Query: 517 IGAGMLGSVYRA------QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           +G G  G V  A      +    + +AVK L + A+  +      EL   I    H N+V
Sbjct: 35  LGRGAFGQVIEADAFGIDKTATXRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVV 94
Query: 571 ELKGYCAEHGQRLL-IYEYCSNGTLQDMLHS--------DDELKNNLSWNTRIRMALGAA 621
            L G C + G  L+ I E+C  G L   L S         D  K+ L+    I  +   A
Sbjct: 95  NLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKDLYKDFLTLEHLICYSFQVA 154
Query: 622 RALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
           + +E+L        +HR+  + NI       V + D GLA
Sbjct: 155 KGMEFL---ASRKXIHRDLAARNILLSEKNVVKICDFGLA 191

>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1 Length = 328

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 8/165 (4%)
Query: 505 QQYTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDR 563
           Q +  ++  +  IG G    V  A+ +  G+ +AVK +DK   +     +    V  +  
Sbjct: 11  QPHIGNYRLQKTIGKGNFAKVKLARHVLTGREVAVKIIDKTQLNPTSLQKLFREVRIMKI 70
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
           + H NIV+L           L+ EY S G + D L +   +K   +   + R  +    A
Sbjct: 71  LNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEA-RAKFRQIVS---A 126
Query: 624 LEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGS 668
           ++Y H   Q  IVHR+ K+ N+       + ++D G +   + G+
Sbjct: 127 VQYCH---QKYIVHRDLKAENLLLDGDMNIKIADFGFSNEFTVGN 168

>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r, T208e Double Mutant Length = 327

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 8/172 (4%)
Query: 498 SFTIASLQQYTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLE 556
           S T A  Q +  ++     IG G    V  A+ +  GK +AV+ +DK   +     +   
Sbjct: 3   SATSADEQPHIGNYRLLKTIGKGNFAKVKLARHILTGKEVAVRIIDKTQLNSSSLQKLFR 62
Query: 557 LVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRM 616
            V  +  + H NIV+L           L+ EY S G + D L +   +K   +   + R 
Sbjct: 63  EVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEA-RAKFRQ 121
Query: 617 ALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGS 668
            +    A++Y H   Q  IVHR+ K+ N+       + ++D G +   + G+
Sbjct: 122 IVS---AVQYCH---QKFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGN 167

>pdb|3H9R|A Chain A, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 330

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 69/164 (42%), Gaps = 24/164 (14%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +G G  G V+R     G+ +AVK    R       +   EL N +  +RH NI+   G+ 
Sbjct: 45  VGKGRYGEVWRGSW-QGENVAVKIFSSRDEKSWFRET--ELYNTV-MLRHENIL---GFI 97
Query: 577 AE-------HGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH- 628
           A          Q  LI  Y   G+L D L         L   + +R+ L  A  L +LH 
Sbjct: 98  ASDMTSRHSSTQLWLITHYHEMGSLYDYLQ-----LTTLDTVSCLRIVLSIASGLAHLHI 152
Query: 629 EIC----QPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGS 668
           EI     +P I HR+ KS NI         ++D GLA + S  +
Sbjct: 153 EIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQST 196

>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: K82r Mutant Length = 327

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 8/172 (4%)
Query: 498 SFTIASLQQYTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLE 556
           S T A  Q +  ++     IG G    V  A+ +  GK +AV+ +DK   +     +   
Sbjct: 3   SATSADEQPHIGNYRLLKTIGKGNFAKVKLARHILTGKEVAVRIIDKTQLNSSSLQKLFR 62
Query: 557 LVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRM 616
            V  +  + H NIV+L           L+ EY S G + D L +   +K   +   + R 
Sbjct: 63  EVRIMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEA-RAKFRQ 121
Query: 617 ALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGS 668
            +    A++Y H   Q  IVHR+ K+ N+       + ++D G +   + G+
Sbjct: 122 IVS---AVQYCH---QKFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGN 167

>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With 6-Benzyloxyquinoline Inhibitor Length = 319

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 12/151 (7%)
Query: 516 LIGAGMLGSVYRAQLPD--GKLL--AVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +IG G  G VY   L D  GK +  AVK L+ R +   +  +FL     +    H N++ 
Sbjct: 42  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLN-RITDIGEVSQFLTEGIIMKDFSHPNVLS 100
Query: 572 LKGYCAE-HGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           L G C    G  L++  Y  +G L++ + ++    +N +    I   L  A+ +++L   
Sbjct: 101 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNE---THNPTVKDLIGFGLQVAKGMKFL--- 154
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
                VHR+  + N        V V+D GLA
Sbjct: 155 ASKKFVHRDLAARNCMLDEKFTVKVADFGLA 185

>pdb|2OH4|A Chain A, Crystal Structure Of Vegfr2 With A Benzimidazole-Urea Inhibitor Length = 316

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 66/163 (40%), Gaps = 21/163 (12%)
Query: 517 IGAGMLGSVYRA------QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           +G G  G V  A      +    + +AVK L + A+  +      EL   I    H N+V
Sbjct: 36  LGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVV 95
Query: 571 ELKGYCAEHGQRLL-IYEYCSNGTLQDMLHS-----------DDELKNNLSWNTRIRMAL 618
            L G C + G  L+ I E+C  G L   L S           +D  K+ L+    I  + 
Sbjct: 96  NLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTPEDLYKDFLTLEHLICYSF 155
Query: 619 GAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
             A+ +E+L        +HR+  + NI       V + D GLA
Sbjct: 156 QVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLA 195

>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1 Length = 317

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 12/151 (7%)
Query: 516 LIGAGMLGSVYRAQLPD--GKLL--AVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +IG G  G VY   L D  GK +  AVK L+ R +   +  +FL     +    H N++ 
Sbjct: 38  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLN-RITDIGEVSQFLTEGIIMKDFSHPNVLS 96
Query: 572 LKGYCAE-HGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           L G C    G  L++  Y  +G L++ + ++    +N +    I   L  A+ +++L   
Sbjct: 97  LLGICLRSEGSPLVVLPYMKHGDLRNFIRNE---THNPTVKDLIGFGLQVAKGMKFL--- 150
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
                VHR+  + N        V V+D GLA
Sbjct: 151 ASKKFVHRDLAARNCMLDEKFTVKVADFGLA 181

>pdb|3LMG|A Chain A, Crystal Structure Of The Erbb3 Kinase Domain In Complex With Amp-Pnp Length = 344

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 13/155 (8%)
Query: 515 NLIGAGMLGSVYRA-QLPDGKLLAVK---KLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
            ++G+G+ G+V++   +P+G+ + +    K+ +  S +Q      + +  I  + HA+IV
Sbjct: 37  KVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIV 96
Query: 571 ELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
            L G C   G  L L+ +Y   G+L D +      +  L     +   +  A+ + YL E
Sbjct: 97  RLLGLCP--GSSLQLVTQYLPLGSLLDHVRQH---RGALGPQLLLNWGVQIAKGMYYLEE 151
Query: 630 ICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
                +VHRN  + N+       V V+D G+A L+
Sbjct: 152 HG---MVHRNLAARNVLLKSPSQVQVADFGVADLL 183

>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972 Length = 314

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 12/151 (7%)
Query: 516 LIGAGMLGSVYRAQLPD--GKLL--AVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +IG G  G VY   L D  GK +  AVK L+ R +   +  +FL     +    H N++ 
Sbjct: 37  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLN-RITDIGEVSQFLTEGIIMKDFSHPNVLS 95
Query: 572 LKGYCAE-HGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           L G C    G  L++  Y  +G L++ + ++    +N +    I   L  A+ +++L   
Sbjct: 96  LLGICLRSEGSPLVVLPYMKHGDLRNFIRNE---THNPTVKDLIGFGLQVAKGMKFL--- 149
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
                VHR+  + N        V V+D GLA
Sbjct: 150 ASKKFVHRDLAARNCMLDEKFTVKVADFGLA 180

>pdb|3MTF|A Chain A, Crystal Structure Of The Acvr1 Kinase In Complex With A 2- Aminopyridine Inhibitor Length = 301

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 69/164 (42%), Gaps = 24/164 (14%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +G G  G V+R     G+ +AVK    R       +   EL N +  +RH NI+   G+ 
Sbjct: 16  VGKGRYGEVWRGSW-QGENVAVKIFSSRDEKSWFRET--ELYNTV-MLRHENIL---GFI 68
Query: 577 AE-------HGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH- 628
           A          Q  LI  Y   G+L D L         L   + +R+ L  A  L +LH 
Sbjct: 69  ASDMTSRHSSTQLWLITHYHEMGSLYDYLQL-----TTLDTVSCLRIVLSIASGLAHLHI 123
Query: 629 EIC----QPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGS 668
           EI     +P I HR+ KS NI         ++D GLA + S  +
Sbjct: 124 EIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQST 167

>pdb|4DYM|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex With The Imidazo[1,2-B]pyridazine Inhibitor K00135 Length = 301

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 69/164 (42%), Gaps = 24/164 (14%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           +G G  G V+R     G+ +AVK    R       +   EL N +  +RH NI+   G+ 
Sbjct: 16  VGKGRYGEVWRGSW-QGENVAVKIFSSRDEKSWFRET--ELYNTV-MLRHENIL---GFI 68
Query: 577 AE-------HGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH- 628
           A          Q  LI  Y   G+L D L         L   + +R+ L  A  L +LH 
Sbjct: 69  ASDMTSRHSSTQLWLITHYHEMGSLYDYLQL-----TTLDTVSCLRIVLSIASGLAHLHI 123
Query: 629 EIC----QPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGS 668
           EI     +P I HR+ KS NI         ++D GLA + S  +
Sbjct: 124 EIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQST 167

>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Aminopyridine Based Inhibitor Length = 314

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 12/151 (7%)
Query: 516 LIGAGMLGSVYRAQLPD--GKLL--AVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +IG G  G VY   L D  GK +  AVK L+ R +   +  +FL     +    H N++ 
Sbjct: 37  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLN-RITDIGEVSQFLTEGIIMKDFSHPNVLS 95
Query: 572 LKGYCAE-HGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           L G C    G  L++  Y  +G L++ + ++    +N +    I   L  A+ +++L   
Sbjct: 96  LLGICLRSEGSPLVVLPYMKHGDLRNFIRNE---THNPTVKDLIGFGLQVAKGMKFL--- 149
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
                VHR+  + N        V V+D GLA
Sbjct: 150 ASKKFVHRDLAARNCMLDEKFTVKVADFGLA 180

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 15/165 (9%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDE-----FLELVNNIDRIRHANIVE 571
           +G G + +VY   L +  +L +K   K      ++ E     F   V+N  ++ H NIV 
Sbjct: 19  LGGGGMSTVY---LAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVS 75
Query: 572 LKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEIC 631
           +     E     L+ EY    TL + + S       LS +T I         +++ H++ 
Sbjct: 76  MIDVDEEDDCYYLVMEYIEGPTLSEYIES----HGPLSVDTAINFTNQILDGIKHAHDM- 130
Query: 632 QPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQVSHNL 676
              IVHR+ K  NI       + + D G+A  +S  S++Q +H L
Sbjct: 131 --RIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVL 173

>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1 Length = 317

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 12/151 (7%)
Query: 516 LIGAGMLGSVYRAQLPD--GKLL--AVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +IG G  G VY   L D  GK +  AVK L+ R +   +  +FL     +    H N++ 
Sbjct: 38  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLN-RITDIGEVSQFLTEGIIMKDFSHPNVLS 96
Query: 572 LKGYCAE-HGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           L G C    G  L++  Y  +G L++ + ++    +N +    I   L  A+ +++L   
Sbjct: 97  LLGICLRSEGSPLVVLPYMKHGDLRNFIRNE---THNPTVKDLIGFGLQVAKGMKFL--- 150
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
                VHR+  + N        V V+D GLA
Sbjct: 151 ASKKFVHRDLAARNCMLDEKFTVKVADFGLA 181

>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With The Microbial Alkaloid K-252a Length = 312

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 12/151 (7%)
Query: 516 LIGAGMLGSVYRAQLPD--GKLL--AVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVE 571
           +IG G  G VY   L D  GK +  AVK L+ R +   +  +FL     +    H N++ 
Sbjct: 35  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLN-RITDIGEVSQFLTEGIIMKDFSHPNVLS 93
Query: 572 LKGYCAE-HGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           L G C    G  L++  Y  +G L++ + ++    +N +    I   L  A+ +++L   
Sbjct: 94  LLGICLRSEGSPLVVLPYMKHGDLRNFIRNE---THNPTVKDLIGFGLQVAKGMKFL--- 147
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
                VHR+  + N        V V+D GLA
Sbjct: 148 ASKKFVHRDLAARNCMLDEKFTVKVADFGLA 178

>pdb|4FIE|A Chain A, Full-Length Human Pak4 Length = 423

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 14/162 (8%)
Query: 505 QQYTNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDR 563
           + Y ++F +   IG G  G V  A +   GKL+AVKK+D R   Q+++  F E+V   D 
Sbjct: 150 RSYLDNFIK---IGEGSTGIVCIATVRSSGKLVAVKKMDLR-KQQRRELLFNEVVIMRD- 204
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
            +H N+VE+        +  ++ E+   G L D++         ++      + L   +A
Sbjct: 205 YQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIV-----THTRMNEEQIAAVCLAVLQA 259
Query: 624 LEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
           L  LH      ++HR+ KS +I       V +SD G    +S
Sbjct: 260 LSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVS 298

>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549h Mutation Responsible For Crouzon Syndrome. Length = 324

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 70/169 (41%), Gaps = 31/169 (18%)
Query: 517 IGAGMLGSVYRAQL--------PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR--- 565
           +G G  G V  A+          +   +AVK L   A+ +   D    LV+ ++ ++   
Sbjct: 43  LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD----LVSEMEMMKMIG 98
Query: 566 -HANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHS------------DDELKNNLSWNT 612
            H NI+ L G C + G   +I EY S G L++ L +            +   +  +++  
Sbjct: 99  KHKNIIHLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 158
Query: 613 RIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
            +      AR +EYL        +HR+  + N+       + ++D GLA
Sbjct: 159 LVSCTYQLARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLA 204

>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Cgp74514a Length = 303

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 14/163 (8%)
Query: 505 QQYTNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDR 563
           + Y ++F +   IG G  G V  A +   GKL+AVKK+D R   Q+++  F E+V   D 
Sbjct: 30  RSYLDNFIK---IGEGSTGIVCIATVRSSGKLVAVKKMDLR-KQQRRELLFNEVVIMRD- 84
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
            +H N+VE+        +  ++ E+   G L D++      +  ++      + L   +A
Sbjct: 85  YQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIA-----AVCLAVLQA 139
Query: 624 LEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
           L  LH      ++HR+ KS +I       V +SD G    +S 
Sbjct: 140 LSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSK 179

>pdb|3KEX|A Chain A, Crystal Structure Of The Catalytically Inactive Kinase Domain Of The Human Epidermal Growth Factor Receptor 3 (Her3) Length = 325

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 13/155 (8%)
Query: 515 NLIGAGMLGSVYRA-QLPDGKLLAVK---KLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
            ++G+G+ G+V++   +P+G+ + +    K+ +  S +Q      + +  I  + HA+IV
Sbjct: 19  KVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIV 78
Query: 571 ELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
            L G C   G  L L+ +Y   G+L D +      +  L     +   +  A+ + YL E
Sbjct: 79  RLLGLCP--GSSLQLVTQYLPLGSLLDHVRQH---RGALGPQLLLNWGVQIAKGMYYLEE 133
Query: 630 ICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI 664
                +VHRN  + N+       V V+D G+A L+
Sbjct: 134 HG---MVHRNLAARNVLLKSPSQVQVADFGVADLL 165

>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K526e Mutation Responsible For Crouzon Syndrome Length = 324

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 70/169 (41%), Gaps = 31/169 (18%)
Query: 517 IGAGMLGSVYRAQL--------PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR--- 565
           +G G  G V  A+          +   +AVK L   A+ +   D    LV+ ++ ++   
Sbjct: 43  LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEEDLSD----LVSEMEMMKMIG 98
Query: 566 -HANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHS------------DDELKNNLSWNT 612
            H NI+ L G C + G   +I EY S G L++ L +            +   +  +++  
Sbjct: 99  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 158
Query: 613 RIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
            +      AR +EYL        +HR+  + N+       + ++D GLA
Sbjct: 159 LVSCTYQLARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLA 204

>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 Length = 292

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 14/163 (8%)
Query: 505 QQYTNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDR 563
           + Y ++F +   IG G  G V  A +   GKL+AVKK+D R   Q+++  F E+V   D 
Sbjct: 19  RSYLDNFIK---IGEGSTGIVCIATVRSSGKLVAVKKMDLR-KQQRRELLFNEVVIMRD- 73
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
            +H N+VE+        +  ++ E+   G L D++      +  ++      + L   +A
Sbjct: 74  YQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIA-----AVCLAVLQA 128
Query: 624 LEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
           L  LH      ++HR+ KS +I       V +SD G    +S 
Sbjct: 129 LSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSK 168

>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Pf-03758309 Length = 296

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 14/163 (8%)
Query: 505 QQYTNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDR 563
           + Y ++F +   IG G  G V  A +   GKL+AVKK+D R   Q+++  F E+V   D 
Sbjct: 23  RSYLDNFIK---IGEGSTGIVCIATVRSSGKLVAVKKMDLR-KQQRRELLFNEVVIMRD- 77
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
            +H N+VE+        +  ++ E+   G L D++      +  ++      + L   +A
Sbjct: 78  YQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIA-----AVCLAVLQA 132
Query: 624 LEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
           L  LH      ++HR+ KS +I       V +SD G    +S 
Sbjct: 133 LSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSK 172

>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild Type Fgf Receptor 2 (Fgfr2) Kinase Domain Length = 370

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 33/170 (19%)
Query: 517 IGAGMLGSVYRAQL--------PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR--- 565
           +G G  G V  A+          +   +AVK L   A+ +   D    LV+ ++ ++   
Sbjct: 89  LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD----LVSEMEMMKMIG 144
Query: 566 -HANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHS------------DDELKNNLSWNT 612
            H NI+ L G C + G   +I EY S G L++ L +            +   +  +++  
Sbjct: 145 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 204
Query: 613 RIRMALGAARALEYL-HEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
            +      AR +EYL  + C    +HR+  + N+       + ++D GLA
Sbjct: 205 LVSCTYQLARGMEYLASQKC----IHRDLAARNVLVTENNVMKIADFGLA 250

>pdb|2P2I|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Nicotinamide Inhibitor Length = 314

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 66/164 (40%), Gaps = 22/164 (13%)
Query: 517 IGAGMLGSVYRA------QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           +G G  G V  A      +    + +AVK L + A+  +      EL   I    H N+V
Sbjct: 26  LGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVV 85
Query: 571 ELKGYCAEHGQRLL-IYEYCSNGTLQDMLHS------------DDELKNNLSWNTRIRMA 617
            L G C + G  L+ I E+C  G L   L S            +D  K+ L+    I  +
Sbjct: 86  NLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYS 145
Query: 618 LGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
              A+ +E+L        +HR+  + NI       V + D GLA
Sbjct: 146 FQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLA 186

>pdb|1YWN|A Chain A, Vegfr2 In Complex With A Novel 4-amino-furo[2,3-d]pyrimidine Length = 316

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 66/164 (40%), Gaps = 22/164 (13%)
Query: 517 IGAGMLGSVYRA------QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           +G G  G V  A      +    + +AVK L + A+  +      EL   I    H N+V
Sbjct: 35  LGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVV 94
Query: 571 ELKGYCAEHGQRLL-IYEYCSNGTLQDMLHS------------DDELKNNLSWNTRIRMA 617
            L G C + G  L+ I E+C  G L   L S            +D  K+ L+    I  +
Sbjct: 95  NLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYS 154
Query: 618 LGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
              A+ +E+L        +HR+  + NI       V + D GLA
Sbjct: 155 FQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLA 195

>pdb|4AGC|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase Domains) In Complex With Axitinib (Ag-013736) (N-Methyl-2-( 3-((E)-2-Pyridin-2-Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)- Benzamide) Length = 353

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 66/164 (40%), Gaps = 22/164 (13%)
Query: 517 IGAGMLGSVYRA------QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           +G G  G V  A      +    + +AVK L + A+  +      EL   I    H N+V
Sbjct: 72  LGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVV 131
Query: 571 ELKGYCAEHGQRLL-IYEYCSNGTLQDMLHS------------DDELKNNLSWNTRIRMA 617
            L G C + G  L+ I E+C  G L   L S            +D  K+ L+    I  +
Sbjct: 132 NLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYS 191
Query: 618 LGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
              A+ +E+L        +HR+  + NI       V + D GLA
Sbjct: 192 FQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLA 232

>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain Length = 308

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 22/162 (13%)
Query: 517 IGAGMLGSVYRAQL------PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           +G    G VY+  L         + +A+K L  +A    ++ EF        R++H N+V
Sbjct: 34  LGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLRE-EFRHEAMLRARLQHPNVV 92
Query: 571 ELKGYCAEHGQRLLIYEYCSNGTLQDML-----HS-------DDELKNNLSWNTRIRMAL 618
            L G   +     +I+ YCS+G L + L     HS       D  +K+ L     + +  
Sbjct: 93  CLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVA 152
Query: 619 GAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGL 660
             A  +EYL       +VH++  + N+       V +SD GL
Sbjct: 153 QIAAGMEYL---SSHHVVHKDLATRNVLVYDKLNVKISDLGL 191

>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp Analog And Substrate Peptide Length = 334

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 33/170 (19%)
Query: 517 IGAGMLGSVYRAQL--------PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR--- 565
           +G G  G V  A+          +   +AVK L   A+ +   D    LV+ ++ ++   
Sbjct: 43  LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD----LVSEMEMMKMIG 98
Query: 566 -HANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHS------------DDELKNNLSWNT 612
            H NI+ L G C + G   +I EY S G L++ L +            +   +  +++  
Sbjct: 99  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEXSYDINRVPEEQMTFKD 158
Query: 613 RIRMALGAARALEYL-HEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
            +      AR +EYL  + C    +HR+  + N+       + ++D GLA
Sbjct: 159 LVSCTYQLARGMEYLASQKC----IHRDLAARNVLVTENNVMKIADFGLA 204

>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide Length = 346

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 14/163 (8%)
Query: 505 QQYTNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDR 563
           + Y ++F +   IG G  G V  A +   GKL+AVKK+D R   Q+++  F E+V   D 
Sbjct: 73  RSYLDNFIK---IGEGSTGIVCIATVRSSGKLVAVKKMDLR-KQQRRELLFNEVVIMRD- 127
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
            +H N+VE+        +  ++ E+   G L D++      +  ++      + L   +A
Sbjct: 128 YQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIA-----AVCLAVLQA 182
Query: 624 LEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
           L  LH      ++HR+ KS +I       V +SD G    +S 
Sbjct: 183 LSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSK 222

>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain Length = 311

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 69/157 (43%), Gaps = 16/157 (10%)
Query: 517 IGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           IG G  G V++ +  D G+++A+KK  +           L  +  + +++H N+V L   
Sbjct: 11  IGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEV 70
Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSD----DELKNNLSWNTRIRMALGAARALEYLHEIC 631
                +  L++EYC +  L ++        + L  +++W T         +A+ + H   
Sbjct: 71  FRRKRRLHLVFEYCDHTVLHELDRYQRGVPEHLVKSITWQT--------LQAVNFCH--- 119
Query: 632 QPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGS 668
           +   +HR+ K  NI       + + D G A L++  S
Sbjct: 120 KHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPS 156

>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2 Length = 289

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 22/162 (13%)
Query: 517 IGAGMLGSVYRAQL------PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           +G    G VY+  L         + +A+K L  +A    ++ EF        R++H N+V
Sbjct: 17  LGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLRE-EFRHEAMLRARLQHPNVV 75
Query: 571 ELKGYCAEHGQRLLIYEYCSNGTLQDML-----HS-------DDELKNNLSWNTRIRMAL 618
            L G   +     +I+ YCS+G L + L     HS       D  +K+ L     + +  
Sbjct: 76  CLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVA 135
Query: 619 GAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGL 660
             A  +EYL       +VH++  + N+       V +SD GL
Sbjct: 136 QIAAGMEYL---SSHHVVHKDLATRNVLVYDKLNVKISDLGL 174

>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K659n Mutation Responsible For An Unclassified Craniosynostosis Syndrome. Length = 324

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 70/169 (41%), Gaps = 31/169 (18%)
Query: 517 IGAGMLGSVYRAQL--------PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR--- 565
           +G G  G V  A+          +   +AVK L   A+ +   D    LV+ ++ ++   
Sbjct: 43  LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD----LVSEMEMMKMIG 98
Query: 566 -HANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHS------------DDELKNNLSWNT 612
            H NI+ L G C + G   +I EY S G L++ L +            +   +  +++  
Sbjct: 99  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 158
Query: 613 RIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
            +      AR +EYL        +HR+  + N+       + ++D GLA
Sbjct: 159 LVSCTYQLARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLA 204

>pdb|2P2H|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyridinyl-Triazine Inhibitor Length = 314

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 66/164 (40%), Gaps = 22/164 (13%)
Query: 517 IGAGMLGSVYRA------QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           +G G  G V  A      +    + +AVK L + A+  +      EL   I    H N+V
Sbjct: 26  LGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVV 85
Query: 571 ELKGYCAEHGQRLL-IYEYCSNGTLQDMLHS------------DDELKNNLSWNTRIRMA 617
            L G C + G  L+ I E+C  G L   L S            +D  K+ L+    I  +
Sbjct: 86  NLLGACTKPGGPLMVITEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYS 145
Query: 618 LGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
              A+ +E+L        +HR+  + NI       V + D GLA
Sbjct: 146 FQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLA 186

>pdb|1VR2|A Chain A, Human Vascular Endothelial Growth Factor Receptor 2 (Kdr) Kinase Domain Length = 316

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 66/164 (40%), Gaps = 22/164 (13%)
Query: 517 IGAGMLGSVYRA------QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           +G G  G V  A      +    + +AVK L + A+  +      EL   I    H N+V
Sbjct: 35  LGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVV 94
Query: 571 ELKGYCAEHGQRLL-IYEYCSNGTLQDMLHS------------DDELKNNLSWNTRIRMA 617
            L G C + G  L+ I E+C  G L   L S            +D  K+ L+    I  +
Sbjct: 95  NLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYS 154
Query: 618 LGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
              A+ +E+L        +HR+  + NI       V + D GLA
Sbjct: 155 FQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLA 195

>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In Complex With A Consensus Peptide Length = 301

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 14/163 (8%)
Query: 505 QQYTNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDR 563
           + Y ++F +   IG G  G V  A +   GKL+AVKK+D R   Q+++  F E+V   D 
Sbjct: 28  RSYLDNFIK---IGEGSTGIVCIATVRSSGKLVAVKKMDLR-KQQRRELLFNEVVIMRD- 82
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
            +H N+VE+        +  ++ E+   G L D++      +  ++      + L   +A
Sbjct: 83  YQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIA-----AVCLAVLQA 137
Query: 624 LEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
           L  LH      ++HR+ KS +I       V +SD G    +S 
Sbjct: 138 LSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSK 177

>pdb|2XIR|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With Pf-00337210 (N,2-Dimethyl-6-(7-(2-Morpholinoethoxy) Quinolin-4-Yloxy)benzofuran-3-Carboxamide) Length = 316

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 66/164 (40%), Gaps = 22/164 (13%)
Query: 517 IGAGMLGSVYRA------QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           +G G  G V  A      +    + +AVK L + A+  +      EL   I    H N+V
Sbjct: 35  LGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVV 94
Query: 571 ELKGYCAEHGQRLL-IYEYCSNGTLQDMLHS------------DDELKNNLSWNTRIRMA 617
            L G C + G  L+ I E+C  G L   L S            +D  K+ L+    I  +
Sbjct: 95  NLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYS 154
Query: 618 LGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
              A+ +E+L        +HR+  + NI       V + D GLA
Sbjct: 155 FQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLA 195

>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase Domain Length = 317

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 74/195 (37%), Gaps = 22/195 (11%)
Query: 479 EGTAVKTSTKTAKPFTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQL-----PDG 533
           EG +      T  P+     F   +LQ     F +   +GAG  G V  A        D 
Sbjct: 15  EGNSYTFIDPTQLPYNEKWEFPRNNLQ-----FGKT--LGAGAFGKVVEATAFGLGKEDA 67
Query: 534 KL-LAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNG 592
            L +AVK L   A + +K+    EL       +H NIV L G C   G  L+I EYC  G
Sbjct: 68  VLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYG 127
Query: 593 TLQDMLHS------DDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANIX 646
            L + L        D E    L     +  +   A+ + +L        +HR+  + N+ 
Sbjct: 128 DLLNFLRRKAEADLDKEDGRPLELRDLLHFSSQVAQGMAFL---ASKNCIHRDVAARNVL 184
Query: 647 XXXXXAVSVSDCGLA 661
                   + D GLA
Sbjct: 185 LTNGHVAKIGDFGLA 199

>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549t Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 70/169 (41%), Gaps = 31/169 (18%)
Query: 517 IGAGMLGSVYRAQL--------PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR--- 565
           +G G  G V  A+          +   +AVK L   A+ +   D    LV+ ++ ++   
Sbjct: 43  LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD----LVSEMEMMKMIG 98
Query: 566 -HANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHS------------DDELKNNLSWNT 612
            H NI+ L G C + G   +I EY S G L++ L +            +   +  +++  
Sbjct: 99  KHKNIITLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 158
Query: 613 RIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
            +      AR +EYL        +HR+  + N+       + ++D GLA
Sbjct: 159 LVSCTYQLARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLA 204

>pdb|3VNT|A Chain A, Crystal Structure Of The Kinase Domain Of Human Vegfr2 With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 318

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 66/164 (40%), Gaps = 22/164 (13%)
Query: 517 IGAGMLGSVYRA------QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           +G G  G V  A      +    + +AVK L + A+  +      EL   I    H N+V
Sbjct: 37  LGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVV 96
Query: 571 ELKGYCAEHGQRLL-IYEYCSNGTLQDMLHS------------DDELKNNLSWNTRIRMA 617
            L G C + G  L+ I E+C  G L   L S            +D  K+ L+    I  +
Sbjct: 97  NLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKEAPEDLYKDFLTLEHLICYS 156
Query: 618 LGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
              A+ +E+L        +HR+  + NI       V + D GLA
Sbjct: 157 FQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLA 197

>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains Trapped In Trans-Phosphorylation Reaction Length = 334

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 33/170 (19%)
Query: 517 IGAGMLGSVYRAQL--------PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR--- 565
           +G G  G V  A+          +   +AVK L   A+ +   D    LV+ ++ ++   
Sbjct: 43  LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD----LVSEMEMMKMIG 98
Query: 566 -HANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHS------------DDELKNNLSWNT 612
            H NI+ L G C + G   +I EY S G L++ L +            +   +  +++  
Sbjct: 99  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 158
Query: 613 RIRMALGAARALEYL-HEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
            +      AR +EYL  + C    +HR+  + N+       + ++D GLA
Sbjct: 159 LVSCTYQLARGMEYLASQKC----IHRDLAARNVLVTENNVMKIADFGLA 204

>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain Length = 316

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 70/169 (41%), Gaps = 31/169 (18%)
Query: 517 IGAGMLGSVYRAQL--------PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR--- 565
           +G G  G V  A+          +   +AVK L   A+ +   D    LV+ ++ ++   
Sbjct: 35  LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD----LVSEMEMMKMIG 90
Query: 566 -HANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHS------------DDELKNNLSWNT 612
            H NI+ L G C + G   +I EY S G L++ L +            +   +  +++  
Sbjct: 91  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 150
Query: 613 RIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
            +      AR +EYL        +HR+  + N+       + ++D GLA
Sbjct: 151 LVSCTYQLARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLA 196

>pdb|3UG1|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain (G719sT790M) IN The Apo Form Length = 334

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 78/163 (47%), Gaps = 13/163 (7%)
Query: 509 NSFSQENLIGAGMLGSVYRA-QLPDGKLL----AVKKLDKRASSQQKDDEFLELVNNIDR 563
             F +  ++ +G  G+VY+   +P+G+ +    A+K+L + A+S + + E L+    +  
Sbjct: 22  TEFKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKEL-REATSPKANKEILDEAYVMAS 80
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
           + + ++  L G C     +L I +    G L D +    E K+N+     +   +  A+ 
Sbjct: 81  VDNPHVCRLLGICLTSTVQL-IMQLMPFGCLLDYVR---EHKDNIGSQYLLNWCVQIAKG 136
Query: 624 LEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
           + YL +     +VHR+  + N+       V ++D GLA L+ +
Sbjct: 137 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 176

>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a Double Mutant Length = 328

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 8/167 (4%)
Query: 502 ASLQQYTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNN 560
           A  Q +  ++     IG G    V  A+ +  G+ +A+K +DK   +     +    V  
Sbjct: 8   ADEQPHIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRI 67
Query: 561 IDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGA 620
           +  + H NIV+L           LI EY S G + D L +   +K   +  ++ R  +  
Sbjct: 68  MKILNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVAHGRMKEKEA-RSKFRQIVS- 125
Query: 621 ARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSG 667
             A++Y H   Q  IVHR+ K+ N+       + ++D G +   + G
Sbjct: 126 --AVQYCH---QKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVG 167

>pdb|3QUP|A Chain A, Inhibitor Bound Structure Of The Kinase Domain Of The Murine Receptor Tyrosine Kinase Tyro3 (Sky) Length = 323

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 15/171 (8%)
Query: 509 NSFSQENLIGAGMLGSVYRAQLP--DGKLL--AVKKLDKRASSQQKDDEFLELVNNIDRI 564
             F+   ++G G  GSV  AQL   DG  +  AVK L     +    +EFL     +   
Sbjct: 23  QQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEF 82
Query: 565 RHANIVELKGYCAEHGQR------LLIYEYCSNGTLQDMLHSDDELKN--NLSWNTRIRM 616
            H ++ +L G       +      ++I  +  +G L   L +    +N  NL   T +R 
Sbjct: 83  DHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRF 142
Query: 617 ALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSG 667
            +  A  +EYL        +HR+  + N        V V+D GL+  I SG
Sbjct: 143 MVDIACGMEYLS---SRNFIHRDLAARNCMLAEDMTVCVADFGLSRKIYSG 190

>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 20/171 (11%)
Query: 517 IGAGMLGSVYRAQL------PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           +G G  G V+ A+        D  L+AVK L   + + +KD  F      +  ++H +IV
Sbjct: 21  LGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKD--FHREAELLTNLQHEHIV 78
Query: 571 ELKGYCAEHGQRLLIYEYCSNGTLQDML--HSDDEL-------KNNLSWNTRIRMALGAA 621
           +  G C E    ++++EY  +G L   L  H  D +          L+ +  + +A   A
Sbjct: 79  KFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIA 138
Query: 622 RALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQV 672
             + YL        VHR+  + N        V + D G++  + S    +V
Sbjct: 139 AGMVYL---ASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRV 186

>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis Length = 394

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 76/170 (44%), Gaps = 17/170 (10%)
Query: 505 QQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI 564
           +Q   +++   +IG G  G V++A+L +   +A+KK+ +    + ++ + + +V      
Sbjct: 36  EQREIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRFKNRELQIMRIV------ 89
Query: 565 RHANIVELKGYCAEHGQRL------LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMAL 618
           +H N+V+LK +   +G +       L+ EY      +   H   +LK  +          
Sbjct: 90  KHPNVVDLKAFFYSNGDKKDEVFLNLVLEYVPETVYRASRHY-AKLKQTMPMLLIKLYMY 148
Query: 619 GAARALEYLHEICQPPIVHRNFKSANIXXXXXXAV-SVSDCGLAPLISSG 667
              R+L Y+H I    I HR+ K  N+       V  + D G A ++ +G
Sbjct: 149 QLLRSLAYIHSIG---ICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAG 195

>pdb|3B2T|A Chain A, Structure Of Phosphotransferase Length = 311

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 70/169 (41%), Gaps = 31/169 (18%)
Query: 517 IGAGMLGSVYRAQL--------PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR--- 565
           +G G  G V  A+          +   +AVK L   A+ +   D    LV+ ++ ++   
Sbjct: 30  LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD----LVSEMEMMKMIG 85
Query: 566 -HANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHS------------DDELKNNLSWNT 612
            H NI+ L G C + G   +I EY S G L++ L +            +   +  +++  
Sbjct: 86  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 145
Query: 613 RIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
            +      AR +EYL        +HR+  + N+       + ++D GLA
Sbjct: 146 LVSCTYQLARGMEYL---ASQKCIHRDLTARNVLVTENNVMKIADFGLA 191

>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With 6-Bromoindirubin-3'-Oxime Length = 350

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 18/166 (10%)
Query: 510 SFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
           S++   +IG G  G VY+A+L D G+L+A+KK+ +  + + ++   L+++  +D   H N
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQGKAFKNRE---LQIMRKLD---HCN 74
Query: 569 IVELKGYCAEHGQRL------LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR 622
           IV L+ +    G++       L+ +Y      +   H     +       ++ M     R
Sbjct: 75  IVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYM-YQLFR 133
Query: 623 ALEYLHEICQPPIVHRNFKSANIXXXXXXAV-SVSDCGLAPLISSG 667
           +L Y+H      I HR+ K  N+      AV  + D G A  +  G
Sbjct: 134 SLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG 176

>pdb|3EWH|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyridyl-Pyrimidine Benzimidazole Inhibitor Length = 314

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 66/164 (40%), Gaps = 22/164 (13%)
Query: 517 IGAGMLGSVYRA------QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           +G G  G V  A      +    + +AVK L + A+  +      EL   I    H N+V
Sbjct: 26  LGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVV 85
Query: 571 ELKGYCAEHGQRLL-IYEYCSNGTLQDMLHS------------DDELKNNLSWNTRIRMA 617
            L G C + G  L+ I E+C  G L   L S            +D  K+ L+    I  +
Sbjct: 86  NLLGACTKPGGPLMVITEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYS 145
Query: 618 LGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
              A+ +E+L        +HR+  + NI       V + D GLA
Sbjct: 146 FQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLA 186

>pdb|3U6J|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyrazolone Inhibitor Length = 314

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 66/164 (40%), Gaps = 22/164 (13%)
Query: 517 IGAGMLGSVYRA------QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           +G G  G V  A      +    + +AVK L + A+  +      EL   I    H N+V
Sbjct: 26  LGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVV 85
Query: 571 ELKGYCAEHGQRLL-IYEYCSNGTLQDMLHS------------DDELKNNLSWNTRIRMA 617
            L G C + G  L+ I E+C  G L   L S            +D  K+ L+    I  +
Sbjct: 86  NLLGACTKPGGPLMVITEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYS 145
Query: 618 LGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
              A+ +E+L        +HR+  + NI       V + D GLA
Sbjct: 146 FQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLA 186

>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase In Complex With Arq 069 Length = 313

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 70/169 (41%), Gaps = 31/169 (18%)
Query: 517 IGAGMLGSVYRAQL--------PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR--- 565
           +G G  G V  A+          +   +AVK L   A+ +   D    LV+ ++ ++   
Sbjct: 32  LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD----LVSEMEMMKMIG 87
Query: 566 -HANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHS------------DDELKNNLSWNT 612
            H NI+ L G C + G   +I EY S G L++ L +            +   +  +++  
Sbjct: 88  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 147
Query: 613 RIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
            +      AR +EYL        +HR+  + N+       + ++D GLA
Sbjct: 148 LVSCTYQLARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLA 193

>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K641r Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 70/169 (41%), Gaps = 31/169 (18%)
Query: 517 IGAGMLGSVYRAQL--------PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR--- 565
           +G G  G V  A+          +   +AVK L   A+ +   D    LV+ ++ ++   
Sbjct: 43  LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD----LVSEMEMMKMIG 98
Query: 566 -HANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHS------------DDELKNNLSWNT 612
            H NI+ L G C + G   +I EY S G L++ L +            +   +  +++  
Sbjct: 99  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 158
Query: 613 RIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
            +      AR +EYL        +HR+  + N+       + ++D GLA
Sbjct: 159 LVSCTYQLARGMEYL---ASQKCIHRDLAARNVLVTENNVMRIADFGLA 204

>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta. Length = 352

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 18/166 (10%)
Query: 510 SFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
           S++   +IG G  G VY+A+L D G+L+A+KK+ +  + + ++   L+++  +D   H N
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQGKAFKNRE---LQIMRKLD---HCN 74
Query: 569 IVELKGYCAEHGQRL------LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR 622
           IV L+ +    G++       L+ +Y      +   H     +       ++ M     R
Sbjct: 75  IVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYM-YQLFR 133
Query: 623 ALEYLHEICQPPIVHRNFKSANIXXXXXXAV-SVSDCGLAPLISSG 667
           +L Y+H      I HR+ K  N+      AV  + D G A  +  G
Sbjct: 134 SLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG 176

>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain Of Csf-1r Length = 329

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 74/195 (37%), Gaps = 22/195 (11%)
Query: 479 EGTAVKTSTKTAKPFTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQL-----PDG 533
           EG +      T  P+     F   +LQ     F +   +GAG  G V  A        D 
Sbjct: 23  EGNSYTFIDPTQLPYNEKWEFPRNNLQ-----FGKT--LGAGAFGKVVEATAFGLGKEDA 75
Query: 534 KL-LAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNG 592
            L +AVK L   A + +K+    EL       +H NIV L G C   G  L+I EYC  G
Sbjct: 76  VLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYG 135
Query: 593 TLQDMLHS------DDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANIX 646
            L + L        D E    L     +  +   A+ + +L        +HR+  + N+ 
Sbjct: 136 DLLNFLRRKAEADLDKEDGRPLELRDLLHFSSQVAQGMAFL---ASKNCIHRDVAARNVL 192
Query: 647 XXXXXAVSVSDCGLA 661
                   + D GLA
Sbjct: 193 LTNGHVAKIGDFGLA 207

>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 76/184 (41%), Gaps = 26/184 (14%)
Query: 517 IGAGMLGSVYRAQL------PDGKLLAVKKLDKRASSQQKD-DEFLELVNNIDRIRHANI 569
           +G G  G V+ A+        D  L+AVK L     + +KD     EL+ N+   +H +I
Sbjct: 23  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNL---QHEHI 79
Query: 570 VELKGYCAEHGQRLLIYEYCSNGTLQDML--HSDDEL----------KNNLSWNTRIRMA 617
           V+  G C +    ++++EY  +G L   L  H  D +          K  L  +  + +A
Sbjct: 80  VKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIA 139
Query: 618 LGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQV-SHNL 676
              A  + YL        VHR+  + N        V + D G++  + S    +V  H +
Sbjct: 140 SQIASGMVYL---ASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTM 196
Query: 677 TIMR 680
             +R
Sbjct: 197 LPIR 200

>pdb|2ITN|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In Complex With Amp-Pnp Length = 327

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 78/163 (47%), Gaps = 13/163 (7%)
Query: 509 NSFSQENLIGAGMLGSVYRA-QLPDGKLL----AVKKLDKRASSQQKDDEFLELVNNIDR 563
             F +  ++ +G  G+VY+   +P+G+ +    A+K+L + A+S + + E L+    +  
Sbjct: 15  TEFKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKEL-REATSPKANKEILDEAYVMAS 73
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
           + + ++  L G C     +L I +    G L D +    E K+N+     +   +  A+ 
Sbjct: 74  VDNPHVCRLLGICLTSTVQL-ITQLMPFGCLLDYVR---EHKDNIGSQYLLNWCVQIAKG 129
Query: 624 LEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
           + YL +     +VHR+  + N+       V ++D GLA L+ +
Sbjct: 130 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 169

>pdb|2EB2|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (G719s) Length = 334

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 78/163 (47%), Gaps = 13/163 (7%)
Query: 509 NSFSQENLIGAGMLGSVYRA-QLPDGKLL----AVKKLDKRASSQQKDDEFLELVNNIDR 563
             F +  ++ +G  G+VY+   +P+G+ +    A+K+L + A+S + + E L+    +  
Sbjct: 22  TEFKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKEL-REATSPKANKEILDEAYVMAS 80
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
           + + ++  L G C     +L I +    G L D +    E K+N+     +   +  A+ 
Sbjct: 81  VDNPHVCRLLGICLTSTVQL-ITQLMPFGCLLDYVR---EHKDNIGSQYLLNWCVQIAKG 136
Query: 624 LEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
           + YL +     +VHR+  + N+       V ++D GLA L+ +
Sbjct: 137 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 176

>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1 Length = 328

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 8/164 (4%)
Query: 505 QQYTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDR 563
           Q +  ++     IG G    V  A+ +  G+ +A+K +DK   +     +    V  +  
Sbjct: 8   QPHIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKI 67
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
           + H NIV+L           LI EY S G + D L +   +K   +  ++ R  +    A
Sbjct: 68  LNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVAHGRMKEKEA-RSKFRQIVS---A 123
Query: 624 LEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSG 667
           ++Y H   Q  IVHR+ K+ N+       + ++D G +   + G
Sbjct: 124 VQYCH---QKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVG 164

>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES BY Mimicking Host Substrates Length = 319

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 8/153 (5%)
Query: 517 IGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           IG G    V  A+ +  GK +AVK +DK   +     +    V  +  + H NIV+L   
Sbjct: 15  IGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVKLFEV 74
Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
                   L+ EY S G + D L +   +K   +   + R  +    A++Y H   Q  I
Sbjct: 75  IETEKTLYLVMEYASGGEVFDYLVAHGWMKEKEA-RAKFRQIVS---AVQYCH---QKFI 127
Query: 636 VHRNFKSANIXXXXXXAVSVSDCGLAPLISSGS 668
           VHR+ K+ N+       + ++D G +   + G+
Sbjct: 128 VHRDLKAENLLLDADMNIKIADFGFSNEFTFGN 160

>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat Length = 332

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 12/159 (7%)
Query: 515 NLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELK 573
           +++G G    V  A+     KL+A+K + K+A  + K+      +  + +I+H NIV L 
Sbjct: 24  DVLGTGAFSEVILAEDKRTQKLVAIKCIAKKAL-EGKEGSMENEIAVLHKIKHPNIVALD 82
Query: 574 GYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQP 633
                 G   LI +  S G L D +      K   +     R+      A++YLH++   
Sbjct: 83  DIYESGGHLYLIMQLVSGGELFDRIVE----KGFYTERDASRLIFQVLDAVKYLHDLG-- 136
Query: 634 PIVHRNFKSANIXXXX---XXAVSVSDCGLAPLISSGSV 669
            IVHR+ K  N+          + +SD GL+ +   GSV
Sbjct: 137 -IVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSV 174

>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And Kinase Domains Length = 361

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 78/163 (47%), Gaps = 13/163 (7%)
Query: 509 NSFSQENLIGAGMLGSVYRA-QLPDGKLL----AVKKLDKRASSQQKDDEFLELVNNIDR 563
             F +  ++G+G  G+VY+   +P+G+ +    A+ +L + A+S + + E L+    +  
Sbjct: 49  TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIMEL-REATSPKANKEILDEAYVMAS 107
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
           + + ++  L G C     +L I +    G L D +    E K+N+     +   +  A+ 
Sbjct: 108 VDNPHVCRLLGICLTSTVQL-ITQLMPFGCLLDYVR---EHKDNIGSQYLLNWCVQIAKG 163
Query: 624 LEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISS 666
           + YL +     +VHR+  + N+       V ++D GLA L+ +
Sbjct: 164 MNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 203

>pdb|4EBW|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In Complex With Novel Allosteric Inhibitor Length = 304

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 10/160 (6%)
Query: 517 IGAGMLGSVYRAQL--PDGKLLAVK-KLDKRASSQQKDDEFLELVNNIDRIRHANIVELK 573
           IG G  G V++     P+   LAV  K  K  +S    ++FL+    + +  H +IV+L 
Sbjct: 46  IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 105
Query: 574 GYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQP 633
           G   E+    +I E C+ G L+  L      K +L   + I  A   + AL YL      
Sbjct: 106 GVITENPV-WIIMELCTLGELRSFLQVR---KYSLDLASLILYAYQLSTALAYLE---SK 158
Query: 634 PIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQVS 673
             VHR+  + N+       V + D GL+  +   +  + S
Sbjct: 159 RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKAS 198

>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide Length = 350

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 18/166 (10%)
Query: 510 SFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
           S++   +IG G  G VY+A+L D G+L+A+KK+ +  + + ++   L+++  +D   H N
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQGKAFKNRE---LQIMRKLD---HCN 74
Query: 569 IVELKGYCAEHGQRL------LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR 622
           IV L+ +    G++       L+ +Y      +   H     +       ++ M     R
Sbjct: 75  IVRLRYFFYSSGEKKDEVYLNLVLDYVPATVYRVARHYSRAKQTLPVIYVKLYM-YQLFR 133
Query: 623 ALEYLHEICQPPIVHRNFKSANIXXXXXXAV-SVSDCGLAPLISSG 667
           +L Y+H      I HR+ K  N+      AV  + D G A  +  G
Sbjct: 134 SLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG 176

>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Inactive Double Mutant With Selenomethionine Length = 327

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 8/172 (4%)
Query: 498 SFTIASLQQYTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLE 556
           S T A  Q +  ++     IG G    V  A+ +  GK +AVK +DK   +     +   
Sbjct: 3   SATSADEQPHIGNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFR 62
Query: 557 LVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRM 616
            V     + H NIV+L           L+ EY S G + D L +    K   +   + R 
Sbjct: 63  EVRIXKVLNHPNIVKLFEVIETEKTLYLVXEYASGGEVFDYLVAHGRXKEKEA-RAKFRQ 121
Query: 617 ALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGS 668
            +    A++Y H   Q  IVHR+ K+ N+       + ++D G +   + G+
Sbjct: 122 IVS---AVQYCH---QKFIVHRDLKAENLLLDADXNIKIADFGFSNEFTFGN 167

>pdb|2J0M|B Chain B, Crystal Structure A Two-Chain Complex Between The Ferm And Kinase Domains Of Focal Adhesion Kinase. Length = 276

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 10/160 (6%)
Query: 517 IGAGMLGSVYRAQL--PDGKLLAVK-KLDKRASSQQKDDEFLELVNNIDRIRHANIVELK 573
           IG G  G V++     P+   LAV  K  K  +S    ++FL+    + +  H +IV+L 
Sbjct: 18  IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 77
Query: 574 GYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQP 633
           G   E+    +I E C+ G L+  L      K +L   + I  A   + AL YL      
Sbjct: 78  GVITENPV-WIIMELCTLGELRSFLQVR---KYSLDLASLILYAYQLSTALAYLE---SK 130
Query: 634 PIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQVS 673
             VHR+  + N+       V + D GL+  +   +  + S
Sbjct: 131 RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKAS 170

>pdb|1MP8|A Chain A, Crystal Structure Of Focal Adhesion Kinase (Fak) Length = 281

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 10/160 (6%)
Query: 517 IGAGMLGSVYRAQL--PDGKLLAVK-KLDKRASSQQKDDEFLELVNNIDRIRHANIVELK 573
           IG G  G V++     P+   LAV  K  K  +S    ++FL+    + +  H +IV+L 
Sbjct: 23  IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 82
Query: 574 GYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQP 633
           G   E+    +I E C+ G L+  L      K +L   + I  A   + AL YL      
Sbjct: 83  GVITENPV-WIIMELCTLGELRSFLQVR---KYSLDLASLILYAYQLSTALAYLE---SK 135
Query: 634 PIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQVS 673
             VHR+  + N+       V + D GL+  +   +  + S
Sbjct: 136 RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKAS 175

>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5 Length = 317

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 14/162 (8%)
Query: 505 QQYTNSFSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDR 563
           ++Y  +F +   IG G  G V  A +   GK +AVKK+D R   QQ+ +     V  +  
Sbjct: 44  REYLANFIK---IGEGSTGIVCIATEKHTGKQVAVKKMDLR--KQQRRELLFNEVVIMRD 98
Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
             H N+V++        +  ++ E+   G L D++      +  ++      + L   RA
Sbjct: 99  YHHDNVVDMYSSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIA-----TVCLSVLRA 153
Query: 624 LEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLIS 665
           L YLH      ++HR+ KS +I       + +SD G    +S
Sbjct: 154 LSYLH---NQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVS 192

>pdb|3BZ3|A Chain A, Crystal Structure Analysis Of Focal Adhesion Kinase With A Methanesulfonamide Diaminopyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 10/160 (6%)
Query: 517 IGAGMLGSVYRAQL--PDGKLLAVK-KLDKRASSQQKDDEFLELVNNIDRIRHANIVELK 573
           IG G  G V++     P+   LAV  K  K  +S    ++FL+    + +  H +IV+L 
Sbjct: 15  IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 74
Query: 574 GYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQP 633
           G   E+    +I E C+ G L+  L      K +L   + I  A   + AL YL      
Sbjct: 75  GVITENPV-WIIMELCTLGELRSFLQVR---KYSLDLASLILYAYQLSTALAYLE---SK 127
Query: 634 PIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQVS 673
             VHR+  + N+       V + D GL+  +   +  + S
Sbjct: 128 RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKAS 167

>pdb|3PXK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Pyrrolo[2,3- D]thiazole Length = 282

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 10/160 (6%)
Query: 517 IGAGMLGSVYRAQL--PDGKLLAVK-KLDKRASSQQKDDEFLELVNNIDRIRHANIVELK 573
           IG G  G V++     P+   LAV  K  K  +S    ++FL+    + +  H +IV+L 
Sbjct: 21  IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 80
Query: 574 GYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQP 633
           G   E+    +I E C+ G L+  L      K +L   + I  A   + AL YL      
Sbjct: 81  GVITENPV-WIIMELCTLGELRSFLQVR---KYSLDLASLILYAYQLSTALAYLE---SK 133
Query: 634 PIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQVS 673
             VHR+  + N+       V + D GL+  +   +  + S
Sbjct: 134 RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKAS 173

>pdb|2ETM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative Length = 281

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 10/160 (6%)
Query: 517 IGAGMLGSVYRAQL--PDGKLLAVK-KLDKRASSQQKDDEFLELVNNIDRIRHANIVELK 573
           IG G  G V++     P+   LAV  K  K  +S    ++FL+    + +  H +IV+L 
Sbjct: 20  IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 79
Query: 574 GYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQP 633
           G   E+    +I E C+ G L+  L      K +L   + I  A   + AL YL      
Sbjct: 80  GVITENPV-WIIMELCTLGELRSFLQVR---KYSLDLASLILYAYQLSTALAYLE---SK 132
Query: 634 PIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQVS 673
             VHR+  + N+       V + D GL+  +   +  + S
Sbjct: 133 RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKAS 172

>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of 8-Anilino-1-Naphthalene Sulfonate Length = 306

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 506 QYTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI 564
           ++  +F +   IG G  G VY+A+    G+++A+KK+     ++      +  ++ +  +
Sbjct: 7   EFMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKEL 66
Query: 565 RHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARAL 624
            H NIV+L        +  L++E+         LH D +   + S  T I + L  +   
Sbjct: 67  NHPNIVKLLDVIHTENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSYLF 117
Query: 625 EYLH--EICQPP-IVHRNFKSANIXXXXXXAVSVSDCGLA 661
           + L     C    ++HR+ K  N+      A+ ++D GLA
Sbjct: 118 QLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 157

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 17/149 (11%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQK--DDEFLELVNNIDRIRHANIVELKG 574
           +G G  G+VY A+  + K +   K+  +A  ++   + +    V     +RH NI+ L G
Sbjct: 16  LGKGKFGNVYLAREKNSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 75
Query: 575 YCAEHGQRLLIYEYCSNGT----LQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           Y  +  +  LI EY   GT    LQ +   D++     ++ T +      A AL Y H  
Sbjct: 76  YFHDSTRVYLILEYAPLGTVYRELQKLSKFDEQ--RTATYITEL------ANALSYCH-- 125
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCG 659
               ++HR+ K  N+       + ++D G
Sbjct: 126 -SKKVIHRDIKPENLLLGSAGELKIADFG 153

>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine Length = 306

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 506 QYTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI 564
           ++  +F +   IG G  G VY+A+    G+++A+KK+     ++      +  ++ +  +
Sbjct: 7   EFMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKEL 66
Query: 565 RHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARAL 624
            H NIV+L        +  L++E+         LH D +   + S  T I + L  +   
Sbjct: 67  NHPNIVKLLDVIHTENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSYLF 117
Query: 625 EYLH--EICQPP-IVHRNFKSANIXXXXXXAVSVSDCGLA 661
           + L     C    ++HR+ K  N+      A+ ++D GLA
Sbjct: 118 QLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 157

>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A Pyrimidinopyridone Inhibitor Length = 333

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 63/161 (39%), Gaps = 19/161 (11%)
Query: 517 IGAGMLGSVYRAQL-----PDGKL-LAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           +GAG  G V  A        D  L +AVK L   A + +K+    EL       +H NIV
Sbjct: 54  LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIV 113
Query: 571 ELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDEL----------KNNLSWNTRIRMALGA 620
            L G C   G  L+I EYC  G L + L     +           + LS    +  +   
Sbjct: 114 NLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTLSTRDLLHFSSQV 173
Query: 621 ARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
           A+ + +L        +HR+  + N+         + D GLA
Sbjct: 174 AQGMAFL---ASKNCIHRDVAARNVLLTNGHVAKIGDFGLA 211

>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 25/144 (17%)
Query: 533 GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQR--LLIYEYCS 590
           G+++AVK L   A  Q +   + + ++ +  + H +I++ KG C + G     L+ EY  
Sbjct: 60  GEMVAVKALKADAGPQHRSG-WKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVP 118
Query: 591 NGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQ-------PPIVHRNFKSA 643
            G+L+D L                R ++G A+ L +  +IC+          +HR+  + 
Sbjct: 119 LGSLRDYL---------------PRHSIGLAQLLLFAQQICEGMAYLHAQHYIHRDLAAR 163
Query: 644 NIXXXXXXAVSVSDCGLAPLISSG 667
           N+       V + D GLA  +  G
Sbjct: 164 NVLLDNDRLVKIGDFGLAKAVPEG 187

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 66/168 (39%), Gaps = 31/168 (18%)
Query: 35  VTNPNDVAAINSLYAALGSPV-LPGWVASAGDPCGESWQGVQCNASDIIAIIXXXXXXXX 93
           + NP D  A+  +   LG+P  L  W+ +  D C  +W GV C+                
Sbjct: 2   LCNPQDKQALLQIKKDLGNPTTLSSWLPTT-DCCNRTWLGVLCDTDT------------- 47
Query: 94  XXXXXXXXFSSIRVIDLSNNHIGGSIPSILPVTMQNF----FL---SDNQFSGSIPSSLA 146
                     + RV +L  + +    P  +P ++ N     FL     N   G IP ++A
Sbjct: 48  ---------QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA 98
Query: 147 TLTLLTDMSLNNNLLSGEIPDAFQSLTGLIXXXXXXXXXXGELPPSLE 194
            LT L  + + +  +SG IPD    +  L+          G LPPS+ 
Sbjct: 99  KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146

>pdb|2JKK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 10/160 (6%)
Query: 517 IGAGMLGSVYRAQL--PDGKLLAVK-KLDKRASSQQKDDEFLELVNNIDRIRHANIVELK 573
           IG G  G V++     P+   +AV  K  K  +S    ++FL+    + +  H +IV+L 
Sbjct: 18  IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 77
Query: 574 GYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQP 633
           G   E+    +I E C+ G L+  L      K +L   + I  A   + AL YL      
Sbjct: 78  GVITENPV-WIIMELCTLGELRSFLQVR---KFSLDLASLILYAYQLSTALAYLE---SK 130
Query: 634 PIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQVS 673
             VHR+  + N+       V + D GL+  +   +  + S
Sbjct: 131 RFVHRDIAARNVLVSATDCVKLGDFGLSRYMEDSTYYKAS 170

>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An Arylamide Inhibitor Length = 333

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 62/161 (38%), Gaps = 19/161 (11%)
Query: 517 IGAGMLGSVYRAQL-----PDGKL-LAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           +GAG  G V  A        D  L +AVK L   A + +K+    EL       +H NIV
Sbjct: 54  LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIV 113
Query: 571 ELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
            L G C   G  L+I EYC  G L + L     +   L  +    +A   A   + LH  
Sbjct: 114 NLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRV---LETDPAFAIANSTASTRDLLHFS 170
Query: 631 CQPP----------IVHRNFKSANIXXXXXXAVSVSDCGLA 661
            Q             +HR+  + N+         + D GLA
Sbjct: 171 SQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLA 211

>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-293 In Complex With Atp Length = 293

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 12/159 (7%)
Query: 515 NLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELK 573
           +++G G    V  A+     KL+A+K + K A  + K+      +  + +I+H NIV L 
Sbjct: 24  DVLGTGAFSEVILAEDKRTQKLVAIKCIAKEAL-EGKEGSMENEIAVLHKIKHPNIVALD 82
Query: 574 GYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQP 633
                 G   LI +  S G L D +      K   +     R+      A++YLH++   
Sbjct: 83  DIYESGGHLYLIMQLVSGGELFDRIVE----KGFYTERDASRLIFQVLDAVKYLHDL--- 135
Query: 634 PIVHRNFKSANIXXXXX---XAVSVSDCGLAPLISSGSV 669
            IVHR+ K  N+          + +SD GL+ +   GSV
Sbjct: 136 GIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSV 174

>pdb|4EC8|A Chain A, Structure Of Full Length Cdk9 In Complex With Cyclint And Drb Length = 373

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 22/167 (13%)
Query: 517 IGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           IG G  G V++A+    G+ +A+KK+      +      L  +  +  ++H N+V L   
Sbjct: 26  IGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEI 85
Query: 576 CAEH--------GQRLLIYEYCSN---GTLQDMLHSDDELKNNLSWNTRIRMALGAARAL 624
           C           G   L++++C +   G L ++L     +K  LS   R+   L     L
Sbjct: 86  CRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVL-----VKFTLSEIKRVMQML--LNGL 138
Query: 625 EYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQ 671
            Y+H   +  I+HR+ K+AN+       + ++D GLA   S    SQ
Sbjct: 139 YYIH---RNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQ 182

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 68/163 (41%), Gaps = 13/163 (7%)
Query: 501 IASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQK--DDEFLELV 558
           + S Q     F     +G G  G+VY A+    K +   K+  +A  ++   + +    V
Sbjct: 3   LGSRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV 62
Query: 559 NNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLH--SDDELKNNLSWNTRIRM 616
                +RH NI+ L GY  +  +  LI EY   GT+   L   S  + +   ++ T +  
Sbjct: 63  EIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITEL-- 120
Query: 617 ALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCG 659
               A AL Y H      ++HR+ K  N+       + ++D G
Sbjct: 121 ----ANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFG 156

>pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 10/160 (6%)
Query: 517 IGAGMLGSVYRAQL--PDGKLLAVK-KLDKRASSQQKDDEFLELVNNIDRIRHANIVELK 573
           IG G  G V++     P+   +AV  K  K  +S    ++FL+    + +  H +IV+L 
Sbjct: 18  IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 77
Query: 574 GYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQP 633
           G   E+    +I E C+ G L+  L      K +L   + I  A   + AL YL      
Sbjct: 78  GVITENPV-WIIMELCTLGELRSFLQVR---KYSLDLASLILYAYQLSTALAYLE---SK 130
Query: 634 PIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQVS 673
             VHR+  + N+       V + D GL+  +   +  + S
Sbjct: 131 RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKAS 170

>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I) Length = 327

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 74/171 (43%), Gaps = 18/171 (10%)
Query: 511 FSQENLIGAGMLGSVYRAQ----LPDGKLLAVKKLDKRASSQQ-KDDEFLELVNNI-DRI 564
           F    ++G G  G V++ +       GK+ A+K L K    +  KD    +   NI + +
Sbjct: 19  FELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEV 78
Query: 565 RHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLS--WNTRIRMALGAAR 622
           +H  IV+L       G+  LI EY S G L   L  +     + +  +   I MALG   
Sbjct: 79  KHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALG--- 135
Query: 623 ALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAP-LISSGSVSQV 672
              +LH   Q  I++R+ K  NI       V ++D GL    I  G+V+  
Sbjct: 136 ---HLH---QKGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGTVTHT 180

>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase 1d Length = 334

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 70/163 (42%), Gaps = 12/163 (7%)
Query: 511 FSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
           F  +  +G G    V  A+    GKL AVK + K+A  + K+      +  + +I+H NI
Sbjct: 24  FEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKAL-KGKESSIENEIAVLRKIKHENI 82
Query: 570 VELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
           V L+          L+ +  S G L D +  +         +T IR  L    A+ YLH 
Sbjct: 83  VALEDIYESPNHLYLVMQLVSGGELFDRI-VEKGFYTEKDASTLIRQVLD---AVYYLHR 138
Query: 630 ICQPPIVHRNFKSANIXXXXX---XAVSVSDCGLAPLISSGSV 669
           +    IVHR+ K  N+          + +SD GL+ +   G V
Sbjct: 139 M---GIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDV 178

>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains. Length = 656

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 78/182 (42%), Gaps = 13/182 (7%)
Query: 498 SFTIASLQQYTNSFSQENL---IGAGMLGSVYRAQL--PDGKLLAVK-KLDKRASSQQKD 551
           ++T+ S + Y     +  L   IG G  G V++     P+   +AV  K  K  +S    
Sbjct: 376 TYTMPSTRDYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVR 435
Query: 552 DEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWN 611
           ++FL+    + +  H +IV+L G   E+    +I E C+ G L+  L      K +L   
Sbjct: 436 EKFLQEALTMRQFDHPHIVKLIGVITENPV-WIIMELCTLGELRSFLQVR---KFSLDLA 491
Query: 612 TRIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQ 671
           + I  A   + AL YL        VHR+  + N+       V + D GL+  +   +  +
Sbjct: 492 SLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSATDCVKLGDFGLSRYMEDSTYYK 548
Query: 672 VS 673
            S
Sbjct: 549 AS 550

>pdb|2J0L|A Chain A, Crystal Structure Of A The Active Conformation Of The Kinase Domain Of Focal Adhesion Kinase With A Phosphorylated Activation Loop Length = 276

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 10/160 (6%)
Query: 517 IGAGMLGSVYRAQL--PDGKLLAVK-KLDKRASSQQKDDEFLELVNNIDRIRHANIVELK 573
           IG G  G V++     P+   +AV  K  K  +S    ++FL+    + +  H +IV+L 
Sbjct: 18  IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 77
Query: 574 GYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQP 633
           G   E+    +I E C+ G L+  L      K +L   + I  A   + AL YL      
Sbjct: 78  GVITENPV-WIIMELCTLGELRSFLQVR---KFSLDLASLILYAYQLSTALAYLE---SK 130
Query: 634 PIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQVS 673
             VHR+  + N+       V + D GL+  +   +  + S
Sbjct: 131 RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTXXKAS 170

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 17/149 (11%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQK--DDEFLELVNNIDRIRHANIVELKG 574
           +G G  G+VY A+    K +   K+  +A  ++   + +    V     +RH NI+ L G
Sbjct: 20  LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 79
Query: 575 YCAEHGQRLLIYEYCSNGT----LQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           Y  +  +  LI EY   GT    LQ +   D++     ++ T +      A AL Y H  
Sbjct: 80  YFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ--RTATYITEL------ANALSYCH-- 129
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCG 659
               ++HR+ K  N+       + ++D G
Sbjct: 130 -SKRVIHRDIKPENLLLGSAGELKIADFG 157

>pdb|3A62|A Chain A, Crystal Structure Of Phosphorylated P70s6k1 Length = 327

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 74/170 (43%), Gaps = 18/170 (10%)
Query: 511 FSQENLIGAGMLGSVYRAQ----LPDGKLLAVKKLDKRASSQQ-KDDEFLELVNNI-DRI 564
           F    ++G G  G V++ +       GK+ A+K L K    +  KD    +   NI + +
Sbjct: 19  FELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEV 78
Query: 565 RHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLS--WNTRIRMALGAAR 622
           +H  IV+L       G+  LI EY S G L   L  +     + +  +   I MALG   
Sbjct: 79  KHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALG--- 135
Query: 623 ALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAP-LISSGSVSQ 671
              +LH   Q  I++R+ K  NI       V ++D GL    I  G+V+ 
Sbjct: 136 ---HLH---QKGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGTVTH 179

>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-315 In Complex With Atp Length = 315

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 12/159 (7%)
Query: 515 NLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELK 573
           +++G G    V  A+     KL+A+K + K A  + K+      +  + +I+H NIV L 
Sbjct: 24  DVLGTGAFSEVILAEDKRTQKLVAIKCIAKEAL-EGKEGSMENEIAVLHKIKHPNIVALD 82
Query: 574 GYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQP 633
                 G   LI +  S G L D +      K   +     R+      A++YLH++   
Sbjct: 83  DIYESGGHLYLIMQLVSGGELFDRIVE----KGFYTERDASRLIFQVLDAVKYLHDL--- 135
Query: 634 PIVHRNFKSANIXXXXX---XAVSVSDCGLAPLISSGSV 669
            IVHR+ K  N+          + +SD GL+ +   GSV
Sbjct: 136 GIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSV 174

>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 17/149 (11%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQK--DDEFLELVNNIDRIRHANIVELKG 574
           +G G  G+VY A+    K +   K+  +A  ++   + +    V     +RH NI+ L G
Sbjct: 19  LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 78
Query: 575 YCAEHGQRLLIYEYCSNGT----LQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           Y  +  +  LI EY   GT    LQ +   D++     ++ T +      A AL Y H  
Sbjct: 79  YFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ--RTATYITEL------ANALSYCH-- 128
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCG 659
               ++HR+ K  N+       + ++D G
Sbjct: 129 -SKRVIHRDIKPENLLLGSAGELKIADFG 156

>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains Length = 656

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 78/182 (42%), Gaps = 13/182 (7%)
Query: 498 SFTIASLQQYTNSFSQENL---IGAGMLGSVYRAQL--PDGKLLAVK-KLDKRASSQQKD 551
           ++T+ S + Y     +  L   IG G  G V++     P+   +AV  K  K  +S    
Sbjct: 376 TYTMPSTRDYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVR 435
Query: 552 DEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWN 611
           ++FL+    + +  H +IV+L G   E+    +I E C+ G L+  L      K +L   
Sbjct: 436 EKFLQEALTMRQFDHPHIVKLIGVITENPV-WIIMELCTLGELRSFLQVR---KFSLDLA 491
Query: 612 TRIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQ 671
           + I  A   + AL YL        VHR+  + N+       V + D GL+  +   +  +
Sbjct: 492 SLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYK 548
Query: 672 VS 673
            S
Sbjct: 549 AS 550

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 17/149 (11%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQK--DDEFLELVNNIDRIRHANIVELKG 574
           +G G  G+VY A+    K +   K+  +A  ++   + +    V     +RH NI+ L G
Sbjct: 17  LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 76
Query: 575 YCAEHGQRLLIYEYCSNGT----LQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           Y  +  +  LI EY   GT    LQ +   D++     ++ T +      A AL Y H  
Sbjct: 77  YFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ--RTATYITEL------ANALSYCH-- 126
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCG 659
               ++HR+ K  N+       + ++D G
Sbjct: 127 -SKRVIHRDIKPENLLLGSAGELKIADFG 154

>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-320 In Complex With Atp Length = 320

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 12/159 (7%)
Query: 515 NLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELK 573
           +++G G    V  A+     KL+A+K + K A  + K+      +  + +I+H NIV L 
Sbjct: 24  DVLGTGAFSEVILAEDKRTQKLVAIKCIAKEAL-EGKEGSMENEIAVLHKIKHPNIVALD 82
Query: 574 GYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQP 633
                 G   LI +  S G L D +      K   +     R+      A++YLH++   
Sbjct: 83  DIYESGGHLYLIMQLVSGGELFDRIVE----KGFYTERDASRLIFQVLDAVKYLHDL--- 135
Query: 634 PIVHRNFKSANIXXXXX---XAVSVSDCGLAPLISSGSV 669
            IVHR+ K  N+          + +SD GL+ +   GSV
Sbjct: 136 GIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSV 174

>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 17/149 (11%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQK--DDEFLELVNNIDRIRHANIVELKG 574
           +G G  G+VY A+    K +   K+  +A  ++   + +    V     +RH NI+ L G
Sbjct: 15  LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 74
Query: 575 YCAEHGQRLLIYEYCSNGT----LQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           Y  +  +  LI EY   GT    LQ +   D++     ++ T +      A AL Y H  
Sbjct: 75  YFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ--RTATYITEL------ANALSYCH-- 124
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCG 659
               ++HR+ K  N+       + ++D G
Sbjct: 125 -SKRVIHRDIKPENLLLGSAGELKIADFG 152

>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And Tpx2 Length = 268

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 17/149 (11%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQK--DDEFLELVNNIDRIRHANIVELKG 574
           +G G  G+VY A+    K +   K+  +A  ++   + +    V     +RH NI+ L G
Sbjct: 16  LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 75
Query: 575 YCAEHGQRLLIYEYCSNGT----LQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           Y  +  +  LI EY   GT    LQ +   D++     ++ T +      A AL Y H  
Sbjct: 76  YFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ--RTATYITEL------ANALSYCH-- 125
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCG 659
               ++HR+ K  N+       + ++D G
Sbjct: 126 -SKRVIHRDIKPENLLLGSAGELKIADFG 153

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 13/147 (8%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQK--DDEFLELVNNIDRIRHANIVELKG 574
           +G G  G+VY A+    K +   K+  +A  ++   + +    V     +RH NI+ L G
Sbjct: 16  LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 75
Query: 575 YCAEHGQRLLIYEYCSNGTLQDMLH--SDDELKNNLSWNTRIRMALGAARALEYLHEICQ 632
           Y  +  +  LI EY   GT+   L   S  + +   ++ T +      A AL Y H    
Sbjct: 76  YFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITEL------ANALSYCH---S 126
Query: 633 PPIVHRNFKSANIXXXXXXAVSVSDCG 659
             ++HR+ K  N+       + ++D G
Sbjct: 127 KRVIHRDIKPENLLLGSAGELKIADFG 153

>pdb|3MI9|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb Length = 351

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 22/167 (13%)
Query: 517 IGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           IG G  G V++A+    G+ +A+KK+      +      L  +  +  ++H N+V L   
Sbjct: 25  IGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEI 84
Query: 576 CAEH--------GQRLLIYEYCSN---GTLQDMLHSDDELKNNLSWNTRIRMALGAARAL 624
           C           G   L++++C +   G L ++L     +K  LS   R+   L     L
Sbjct: 85  CRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVL-----VKFTLSEIKRVMQML--LNGL 137
Query: 625 EYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQ 671
            Y+H   +  I+HR+ K+AN+       + ++D GLA   S    SQ
Sbjct: 138 YYIH---RNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQ 181

>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 17/149 (11%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQK--DDEFLELVNNIDRIRHANIVELKG 574
           +G G  G+VY A+    K +   K+  +A  ++   + +    V     +RH NI+ L G
Sbjct: 16  LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 75
Query: 575 YCAEHGQRLLIYEYCSNGT----LQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           Y  +  +  LI EY   GT    LQ +   D++     ++ T +      A AL Y H  
Sbjct: 76  YFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ--RTATYITEL------ANALSYCH-- 125
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCG 659
               ++HR+ K  N+       + ++D G
Sbjct: 126 -SKRVIHRDIKPENLLLGSAGELKIADFG 153

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 17/149 (11%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQK--DDEFLELVNNIDRIRHANIVELKG 574
           +G G  G+VY A+    K +   K+  +A  ++   + +    V     +RH NI+ L G
Sbjct: 19  LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 78
Query: 575 YCAEHGQRLLIYEYCSNGT----LQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           Y  +  +  LI EY   GT    LQ +   D++     ++ T +      A AL Y H  
Sbjct: 79  YFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ--RTATYITEL------ANALSYCH-- 128
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCG 659
               ++HR+ K  N+       + ++D G
Sbjct: 129 -SKRVIHRDIKPENLLLGSAGELKIADFG 156

>pdb|3BLH|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 Length = 331

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 22/167 (13%)
Query: 517 IGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           IG G  G V++A+    G+ +A+KK+      +      L  +  +  ++H N+V L   
Sbjct: 26  IGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEI 85
Query: 576 CAEH--------GQRLLIYEYCSN---GTLQDMLHSDDELKNNLSWNTRIRMALGAARAL 624
           C           G   L++++C +   G L ++L     +K  LS   R+   L     L
Sbjct: 86  CRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVL-----VKFTLSEIKRVMQML--LNGL 138
Query: 625 EYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQ 671
            Y+H   +  I+HR+ K+AN+       + ++D GLA   S    SQ
Sbjct: 139 YYIH---RNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQ 182

>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 17/149 (11%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQK--DDEFLELVNNIDRIRHANIVELKG 574
           +G G  G+VY A+    K +   K+  +A  ++   + +    V     +RH NI+ L G
Sbjct: 19  LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 78
Query: 575 YCAEHGQRLLIYEYCSNGT----LQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           Y  +  +  LI EY   GT    LQ +   D++     ++ T +      A AL Y H  
Sbjct: 79  YFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ--RTATYITEL------ANALSYCH-- 128
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCG 659
               ++HR+ K  N+       + ++D G
Sbjct: 129 -SKRVIHRDIKPENLLLGSAGELKIADFG 156

>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And Compound 10 Length = 268

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 17/149 (11%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQK--DDEFLELVNNIDRIRHANIVELKG 574
           +G G  G+VY A+    K +   K+  +A  ++   + +    V     +RH NI+ L G
Sbjct: 16  LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 75
Query: 575 YCAEHGQRLLIYEYCSNGT----LQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           Y  +  +  LI EY   GT    LQ +   D++     ++ T +      A AL Y H  
Sbjct: 76  YFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ--RTATYITEL------ANALSYCH-- 125
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCG 659
               ++HR+ K  N+       + ++D G
Sbjct: 126 -SKRVIHRDIKPENLLLGSAGELKIADFG 153

>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 13/147 (8%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQK--DDEFLELVNNIDRIRHANIVELKG 574
           +G G  G+VY A+    K +   K+  +A  ++   + +    V     +RH NI+ L G
Sbjct: 16  LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 75
Query: 575 YCAEHGQRLLIYEYCSNGTLQDMLH--SDDELKNNLSWNTRIRMALGAARALEYLHEICQ 632
           Y  +  +  LI EY   GT+   L   S  + +   ++ T +      A AL Y H    
Sbjct: 76  YFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITEL------ANALSYCH---S 126
Query: 633 PPIVHRNFKSANIXXXXXXAVSVSDCG 659
             ++HR+ K  N+       + ++D G
Sbjct: 127 KRVIHRDIKPENLLLGSAGELKIADFG 153

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 17/149 (11%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQK--DDEFLELVNNIDRIRHANIVELKG 574
           +G G  G+VY A+    K +   K+  +A  ++   + +    V     +RH NI+ L G
Sbjct: 42  LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 101
Query: 575 YCAEHGQRLLIYEYCSNGT----LQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           Y  +  +  LI EY   GT    LQ +   D++     ++ T +      A AL Y H  
Sbjct: 102 YFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ--RTATYITEL------ANALSYCH-- 151
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCG 659
               ++HR+ K  N+       + ++D G
Sbjct: 152 -SKRVIHRDIKPENLLLGSAGELKIADFG 179

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 17/149 (11%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQK--DDEFLELVNNIDRIRHANIVELKG 574
           +G G  G+VY A+    K +   K+  +A  ++   + +    V     +RH NI+ L G
Sbjct: 21  LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 80
Query: 575 YCAEHGQRLLIYEYCSNGT----LQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           Y  +  +  LI EY   GT    LQ +   D++     ++ T +      A AL Y H  
Sbjct: 81  YFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ--RTATYITEL------ANALSYCH-- 130
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCG 659
               ++HR+ K  N+       + ++D G
Sbjct: 131 -SKRVIHRDIKPENLLLGSAGELKIADFG 158

>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 17/149 (11%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQK--DDEFLELVNNIDRIRHANIVELKG 574
           +G G  G+VY A+    K +   K+  +A  ++   + +    V     +RH NI+ L G
Sbjct: 19  LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 78
Query: 575 YCAEHGQRLLIYEYCSNGT----LQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           Y  +  +  LI EY   GT    LQ +   D++     ++ T +      A AL Y H  
Sbjct: 79  YFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ--RTATYITEL------ANALSYCH-- 128
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCG 659
               ++HR+ K  N+       + ++D G
Sbjct: 129 -SKRVIHRDIKPENLLLGSAGELKIADFG 156

>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 13/147 (8%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQK--DDEFLELVNNIDRIRHANIVELKG 574
           +G G  G+VY A+    K +   K+  +A  ++   + +    V     +RH NI+ L G
Sbjct: 16  LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 75
Query: 575 YCAEHGQRLLIYEYCSNGTLQDMLH--SDDELKNNLSWNTRIRMALGAARALEYLHEICQ 632
           Y  +  +  LI EY   GT+   L   S  + +   ++ T +      A AL Y H    
Sbjct: 76  YFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITEL------ANALSYCH---S 126
Query: 633 PPIVHRNFKSANIXXXXXXAVSVSDCG 659
             ++HR+ K  N+       + ++D G
Sbjct: 127 KRVIHRDIKPENLLLGSAGELKIADFG 153

>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 17/149 (11%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQK--DDEFLELVNNIDRIRHANIVELKG 574
           +G G  G+VY A+    K +   K+  +A  ++   + +    V     +RH NI+ L G
Sbjct: 21  LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 80
Query: 575 YCAEHGQRLLIYEYCSNGT----LQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           Y  +  +  LI EY   GT    LQ +   D++     ++ T +      A AL Y H  
Sbjct: 81  YFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ--RTATYITEL------ANALSYCH-- 130
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCG 659
               ++HR+ K  N+       + ++D G
Sbjct: 131 -SKRVIHRDIKPENLLLGSAGELKIADFG 158

>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 26/170 (15%)
Query: 501 IASLQQYT-NSFSQENLIGAGMLGSVYRAQLPDGK-LLAVK-----KLDKRASSQQKDDE 553
           + S +Q+T   F     +G G  G+VY A+    K +LA+K     +L+K     Q   E
Sbjct: 3   LGSKRQWTLEDFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRRE 62
Query: 554 FLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGT----LQDMLHSDDELKNNLS 609
               V     +RH NI+ L GY  +  +  LI EY   GT    LQ +   D++     +
Sbjct: 63  ----VEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSRFDEQ--RTAT 116
Query: 610 WNTRIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCG 659
           + T +      A AL Y H      ++HR+ K  N+       + ++D G
Sbjct: 117 YITEL------ANALSYCH---SKRVIHRDIKPENLLLGSNGELKIADFG 157

>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 17/149 (11%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQK--DDEFLELVNNIDRIRHANIVELKG 574
           +G G  G+VY A+    K +   K+  +A  ++   + +    V     +RH NI+ L G
Sbjct: 17  LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 76
Query: 575 YCAEHGQRLLIYEYCSNGT----LQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           Y  +  +  LI EY   GT    LQ +   D++     ++ T +      A AL Y H  
Sbjct: 77  YFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ--RTATYITEL------ANALSYCH-- 126
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCG 659
               ++HR+ K  N+       + ++D G
Sbjct: 127 -SKRVIHRDIKPENLLLGSAGELKIADFG 154

>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 17/149 (11%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQK--DDEFLELVNNIDRIRHANIVELKG 574
           +G G  G+VY A+    K +   K+  +A  ++   + +    V     +RH NI+ L G
Sbjct: 17  LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 76
Query: 575 YCAEHGQRLLIYEYCSNGT----LQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           Y  +  +  LI EY   GT    LQ +   D++     ++ T +      A AL Y H  
Sbjct: 77  YFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ--RTATYITEL------ANALSYCH-- 126
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCG 659
               ++HR+ K  N+       + ++D G
Sbjct: 127 -SKRVIHRDIKPENLLLGSAGELKIADFG 154

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 17/149 (11%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQK--DDEFLELVNNIDRIRHANIVELKG 574
           +G G  G+VY A+    K +   K+  +A  ++   + +    V     +RH NI+ L G
Sbjct: 16  LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 75
Query: 575 YCAEHGQRLLIYEYCSNGT----LQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           Y  +  +  LI EY   GT    LQ +   D++     ++ T +      A AL Y H  
Sbjct: 76  YFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ--RTATYITEL------ANALSYCH-- 125
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCG 659
               ++HR+ K  N+       + ++D G
Sbjct: 126 -SKRVIHRDIKPENLLLGSAGELKIADFG 153

>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 13/147 (8%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQK--DDEFLELVNNIDRIRHANIVELKG 574
           +G G  G+VY A+    K +   K+  +A  ++   + +    V     +RH NI+ L G
Sbjct: 42  LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 101
Query: 575 YCAEHGQRLLIYEYCSNGTLQDMLH--SDDELKNNLSWNTRIRMALGAARALEYLHEICQ 632
           Y  +  +  LI EY   GT+   L   S  + +   ++ T +      A AL Y H    
Sbjct: 102 YFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITEL------ANALSYCH---S 152
Query: 633 PPIVHRNFKSANIXXXXXXAVSVSDCG 659
             ++HR+ K  N+       + ++D G
Sbjct: 153 KRVIHRDIKPENLLLGSAGELKIADFG 179

>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565a Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 69/169 (40%), Gaps = 31/169 (18%)
Query: 517 IGAGMLGSVYRAQL--------PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR--- 565
           +G G  G V  A+          +   +AVK L   A+ +   D    LV+ ++ ++   
Sbjct: 43  LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD----LVSEMEMMKMIG 98
Query: 566 -HANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHS------------DDELKNNLSWNT 612
            H NI+ L G C + G   +I  Y S G L++ L +            +   +  +++  
Sbjct: 99  KHKNIINLLGACTQDGPLYVIVAYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 158
Query: 613 RIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
            +      AR +EYL        +HR+  + N+       + ++D GLA
Sbjct: 159 LVSCTYQLARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLA 204

>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor Discovered Through Site-Directed Dynamic Tethering Length = 272

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 26/170 (15%)
Query: 501 IASLQQYT-NSFSQENLIGAGMLGSVYRAQLPDGK-LLAVK-----KLDKRASSQQKDDE 553
           + S +Q+T   F     +G G  G+VY A+    K +LA+K     +L+K     Q   E
Sbjct: 3   LGSKRQWTLEDFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRRE 62
Query: 554 FLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGT----LQDMLHSDDELKNNLS 609
               V     +RH NI+ L GY  +  +  LI EY   GT    LQ +   D++     +
Sbjct: 63  ----VEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSRFDEQ--RTAT 116
Query: 610 WNTRIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCG 659
           + T +      A AL Y H      ++HR+ K  N+       + ++D G
Sbjct: 117 YITEL------ANALSYCH---SKRVIHRDIKPENLLLGSNGELKIADFG 157

>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed With A Bisanilinopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 13/157 (8%)
Query: 509 NSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHA 567
            +F +   IG G  G VY+A+    G+++A+KK+     ++      +  ++ +  + H 
Sbjct: 6   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 65
Query: 568 NIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYL 627
           NIV+L        +  L++E+         LH D +   + S  T I + L  +   + L
Sbjct: 66  NIVKLLDVIHTENKLYLVFEF---------LHQDLKTFMDASALTGIPLPLIKSYLFQLL 116
Query: 628 H--EICQPP-IVHRNFKSANIXXXXXXAVSVSDCGLA 661
                C    ++HR+ K  N+      A+ ++D GLA
Sbjct: 117 QGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 153

>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast Amp-Activated Protein Kinase Snf1 Length = 275

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 72/159 (45%), Gaps = 10/159 (6%)
Query: 517 IGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLEL-VNNIDRIRHANIVELKG 574
           +G G  G V  A     G+ +A+K ++K+  ++      +E  ++ +  +RH +I++L  
Sbjct: 21  LGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYD 80
Query: 575 YCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPP 634
                 + +++ EY  N     ++  D      +S     R       A+EY H   +  
Sbjct: 81  VIKSKDEIIMVIEYAGNELFDYIVQRD-----KMSEQEARRFFQQIISAVEYCH---RHK 132
Query: 635 IVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQVS 673
           IVHR+ K  N+       V ++D GL+ +++ G+  + S
Sbjct: 133 IVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTS 171

>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287, Thr288 And Bound To Tpx2 1-43 Length = 282

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 17/149 (11%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQK--DDEFLELVNNIDRIRHANIVELKG 574
           +G G  G+VY A+    K +   K+  +A  ++   + +    V     +RH NI+ L G
Sbjct: 18  LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 77
Query: 575 YCAEHGQRLLIYEYCSNGT----LQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           Y  +  +  LI EY   GT    LQ +   D++     ++ T +      A AL Y H  
Sbjct: 78  YFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ--RTATYITEL------ANALSYCH-- 127
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCG 659
               ++HR+ K  N+       + ++D G
Sbjct: 128 -SKRVIHRDIKPENLLLGSAGELKIADFG 155

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 17/149 (11%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQK--DDEFLELVNNIDRIRHANIVELKG 574
           +G G  G+VY A+    K +   K+  +A  ++   + +    V     +RH NI+ L G
Sbjct: 33  LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 92
Query: 575 YCAEHGQRLLIYEYCSNGT----LQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           Y  +  +  LI EY   GT    LQ +   D++     ++ T +      A AL Y H  
Sbjct: 93  YFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ--RTATYITEL------ANALSYCH-- 142
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCG 659
               ++HR+ K  N+       + ++D G
Sbjct: 143 -SKRVIHRDIKPENLLLGSAGELKIADFG 170

>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain Length = 283

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 72/159 (45%), Gaps = 10/159 (6%)
Query: 517 IGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLEL-VNNIDRIRHANIVELKG 574
           +G G  G V  A     G+ +A+K ++K+  ++      +E  ++ +  +RH +I++L  
Sbjct: 22  LGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYD 81
Query: 575 YCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPP 634
                 + +++ EY  N     ++  D      +S     R       A+EY H   +  
Sbjct: 82  VIKSKDEIIMVIEYAGNELFDYIVQRD-----KMSEQEARRFFQQIISAVEYCH---RHK 133
Query: 635 IVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQVS 673
           IVHR+ K  N+       V ++D GL+ +++ G+  + S
Sbjct: 134 IVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTS 172

>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of The Saccharomyces Cerevisiae Ampk Homolog Snf1 Length = 271

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 72/159 (45%), Gaps = 10/159 (6%)
Query: 517 IGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLEL-VNNIDRIRHANIVELKG 574
           +G G  G V  A     G+ +A+K ++K+  ++      +E  ++ +  +RH +I++L  
Sbjct: 12  LGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYD 71
Query: 575 YCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPP 634
                 + +++ EY  N     ++  D      +S     R       A+EY H   +  
Sbjct: 72  VIKSKDEIIMVIEYAGNELFDYIVQRD-----KMSEQEARRFFQQIISAVEYCH---RHK 123
Query: 635 IVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQVS 673
           IVHR+ K  N+       V ++D GL+ +++ G+  + S
Sbjct: 124 IVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTS 162

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 13/147 (8%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQK--DDEFLELVNNIDRIRHANIVELKG 574
           +G G  G+VY A+    K +   K+  +A  ++   + +    V     +RH NI+ L G
Sbjct: 21  LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 80
Query: 575 YCAEHGQRLLIYEYCSNGTLQDMLH--SDDELKNNLSWNTRIRMALGAARALEYLHEICQ 632
           Y  +  +  LI EY   GT+   L   S  + +   ++ T +      A AL Y H    
Sbjct: 81  YFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITEL------ANALSYCH---S 131
Query: 633 PPIVHRNFKSANIXXXXXXAVSVSDCG 659
             ++HR+ K  N+       + ++D G
Sbjct: 132 KRVIHRDIKPENLLLGSAGELKIADFG 158

>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast Snf1 Length = 274

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 72/159 (45%), Gaps = 10/159 (6%)
Query: 517 IGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLEL-VNNIDRIRHANIVELKG 574
           +G G  G V  A     G+ +A+K ++K+  ++      +E  ++ +  +RH +I++L  
Sbjct: 16  LGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYD 75
Query: 575 YCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPP 634
                 + +++ EY  N     ++  D      +S     R       A+EY H   +  
Sbjct: 76  VIKSKDEIIMVIEYAGNELFDYIVQRD-----KMSEQEARRFFQQIISAVEYCH---RHK 127
Query: 635 IVHRNFKSANIXXXXXXAVSVSDCGLAPLISSGSVSQVS 673
           IVHR+ K  N+       V ++D GL+ +++ G+  + S
Sbjct: 128 IVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTS 166

>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 291

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 25/144 (17%)
Query: 533 GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQR--LLIYEYCS 590
           G+++AVK L +    Q +     E +  +  + H +IV+ KG C + G++   L+ EY  
Sbjct: 38  GEMVAVKALKEGCGPQLRSGWQRE-IEILRTLYHEHIVKYKGCCEDQGEKSVQLVMEYVP 96
Query: 591 NGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQ-------PPIVHRNFKSA 643
            G+L+D L                R  +G A+ L +  +IC+          +HR   + 
Sbjct: 97  LGSLRDYL---------------PRHCVGLAQLLLFAQQICEGMAYLHAQHYIHRALAAR 141
Query: 644 NIXXXXXXAVSVSDCGLAPLISSG 667
           N+       V + D GLA  +  G
Sbjct: 142 NVLLDNDRLVKIGDFGLAKAVPEG 165

>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 290

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 25/144 (17%)
Query: 533 GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQR--LLIYEYCS 590
           G+++AVK L +    Q +     E +  +  + H +IV+ KG C + G++   L+ EY  
Sbjct: 37  GEMVAVKALKEGCGPQLRSGWQRE-IEILRTLYHEHIVKYKGCCEDQGEKSVQLVMEYVP 95
Query: 591 NGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQ-------PPIVHRNFKSA 643
            G+L+D L                R  +G A+ L +  +IC+          +HR   + 
Sbjct: 96  LGSLRDYL---------------PRHCVGLAQLLLFAQQICEGMAYLHAQHYIHRALAAR 140
Query: 644 NIXXXXXXAVSVSDCGLAPLISSG 667
           N+       V + D GLA  +  G
Sbjct: 141 NVLLDNDRLVKIGDFGLAKAVPEG 164

>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant Length = 262

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 17/149 (11%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQK--DDEFLELVNNIDRIRHANIVELKG 574
           +G G  G+VY A+    K +   K+  +A  ++   + +    V     +RH NI+ L G
Sbjct: 13  LGKGKFGNVYLAREKQRKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 72
Query: 575 YCAEHGQRLLIYEYCSNGT----LQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
           Y  +  +  LI EY   GT    LQ +   D++     ++ T +      A AL Y H  
Sbjct: 73  YFHDATRVYLILEYAPLGTVYRELQKLSKFDEQ--RTATYITEL------ANALSYCH-- 122
Query: 631 CQPPIVHRNFKSANIXXXXXXAVSVSDCG 659
               ++HR+ K  N+       + ++D G
Sbjct: 123 -SKRVIHRDIKPENLLLGSAGELKIADFG 150

>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone Inhibitor Length = 335

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 74/198 (37%), Gaps = 22/198 (11%)
Query: 479 EGTAVKTSTKTAKPFTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQL-----PDG 533
           EG +      T  P+     F   +LQ     F +   +GAG  G V  A        D 
Sbjct: 23  EGNSYTFIDPTQLPYNEKWEFPRNNLQ-----FGKT--LGAGAFGKVVEATAFGLGKEDA 75
Query: 534 KL-LAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNG 592
            L +AVK L   A + +K+    EL       +H NIV L G C   G  L+I EYC  G
Sbjct: 76  VLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYG 135
Query: 593 TLQDMLHSDDELKNNLSWNT--RIRMALGAARALEYLHEICQ-------PPIVHRNFKSA 643
            L + L          S+N        L +   L +  ++ Q          +HR+  + 
Sbjct: 136 DLLNFLRRKRPPGLEYSYNPSHNPEEQLSSRDLLHFSSQVAQGMAFLASKNCIHRDVAAR 195
Query: 644 NIXXXXXXAVSVSDCGLA 661
           N+         + D GLA
Sbjct: 196 NVLLTNGHVAKIGDFGLA 213

>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565g Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 69/169 (40%), Gaps = 31/169 (18%)
Query: 517 IGAGMLGSVYRAQL--------PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR--- 565
           +G G  G V  A+          +   +AVK L   A+ +   D    LV+ ++ ++   
Sbjct: 43  LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD----LVSEMEMMKMIG 98
Query: 566 -HANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHS------------DDELKNNLSWNT 612
            H NI+ L G C + G   +I  Y S G L++ L +            +   +  +++  
Sbjct: 99  KHKNIINLLGACTQDGPLYVIVGYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 158
Query: 613 RIRMALGAARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLA 661
            +      AR +EYL        +HR+  + N+       + ++D GLA
Sbjct: 159 LVSCTYQLARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLA 204

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 13/147 (8%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQK--DDEFLELVNNIDRIRHANIVELKG 574
           +G G  G+VY A+    K +   K+  +A  ++   + +    V     +RH NI+ L G
Sbjct: 21  LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 80
Query: 575 YCAEHGQRLLIYEYCSNGTLQDMLH--SDDELKNNLSWNTRIRMALGAARALEYLHEICQ 632
           Y  +  +  LI EY   G +   L   S  + +   ++ T +      A AL Y H    
Sbjct: 81  YFHDATRVYLILEYAPRGEVYKELQKLSKFDEQRTATYITEL------ANALSYCH---S 131
Query: 633 PPIVHRNFKSANIXXXXXXAVSVSDCG 659
             ++HR+ K  N+       + ++D G
Sbjct: 132 KRVIHRDIKPENLLLGSAGELKIADFG 158

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 13/147 (8%)
Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQK--DDEFLELVNNIDRIRHANIVELKG 574
           +G G  G+VY A+    K +   K+  +A  ++   + +    V     +RH NI+ L G
Sbjct: 21  LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 80
Query: 575 YCAEHGQRLLIYEYCSNGTLQDMLH--SDDELKNNLSWNTRIRMALGAARALEYLHEICQ 632
           Y  +  +  LI EY   G +   L   S  + +   ++ T +      A AL Y H    
Sbjct: 81  YFHDATRVYLILEYAPRGEVYKELQKLSKFDEQRTATYITEL------ANALSYCH---S 131
Query: 633 PPIVHRNFKSANIXXXXXXAVSVSDCG 659
             ++HR+ K  N+       + ++D G
Sbjct: 132 KRVIHRDIKPENLLLGSAGELKIADFG 158

>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant (Crystal Form 1) Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 80/176 (45%), Gaps = 19/176 (10%)
Query: 508 TNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLEL---VNNIDR 563
           ++ +    ++G G +  V+ A+ L D + +AVK L  RA   +    +L       N   
Sbjct: 11  SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVL--RADLARDPSFYLRFRREAQNAAA 68
Query: 564 IRHANIVEL--KGYCAEHGQRL--LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALG 619
           + H  IV +   G        L  ++ EY    TL+D++H++      ++    I +   
Sbjct: 69  LNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTE----GPMTPKRAIEVIAD 124
Query: 620 AARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI--SSGSVSQVS 673
           A +AL + H   Q  I+HR+ K ANI      AV V D G+A  I  S  SV+Q +
Sbjct: 125 ACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTA 177

>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 298

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 71/159 (44%), Gaps = 13/159 (8%)
Query: 507 YTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR 565
           +  +F +   IG G  G VY+A+    G+++A+KK+     ++      +  ++ +  + 
Sbjct: 2   HMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 566 HANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALE 625
           H NIV+L        +  L++E+         LH D +   + S  T I + L  +   +
Sbjct: 62  HPNIVKLLDVIHTENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSYLFQ 112
Query: 626 YLH--EICQPP-IVHRNFKSANIXXXXXXAVSVSDCGLA 661
            L     C    ++HR+ K  N+      A+ ++D GLA
Sbjct: 113 LLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 151

>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 80/176 (45%), Gaps = 19/176 (10%)
Query: 508 TNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLEL---VNNIDR 563
           ++ +    ++G G +  V+ A+ L D + +AVK L  RA   +    +L       N   
Sbjct: 11  SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVL--RADLARDPSFYLRFRREAQNAAA 68
Query: 564 IRHANIVEL--KGYCAEHGQRL--LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALG 619
           + H  IV +   G        L  ++ EY    TL+D++H++      ++    I +   
Sbjct: 69  LNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTE----GPMTPKRAIEVIAD 124
Query: 620 AARALEYLHEICQPPIVHRNFKSANIXXXXXXAVSVSDCGLAPLI--SSGSVSQVS 673
           A +AL + H   Q  I+HR+ K ANI      AV V D G+A  I  S  SV+Q +
Sbjct: 125 ACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTA 177

>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 13/157 (8%)
Query: 509 NSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHA 567
            +F +   IG G  G VY+A+    G+++A+KK+     ++      +  ++ +  + H 
Sbjct: 6   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 65
Query: 568 NIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYL 627
           NIV+L        +  L++E+         LH D +   + S  T I + L  +   + L
Sbjct: 66  NIVKLLDVIHTENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSYLFQLL 116
Query: 628 H--EICQPP-IVHRNFKSANIXXXXXXAVSVSDCGLA 661
                C    ++HR+ K  N+      A+ ++D GLA
Sbjct: 117 QGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 153

>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-dependent Kinase Inhibitors Identified Through Structure-based Hybridisation Length = 299

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 13/157 (8%)
Query: 509 NSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHA 567
            +F +   IG G  G VY+A+    G+++A+KK+     ++      +  ++ +  + H 
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 568 NIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYL 627
           NIV+L        +  L++E+         LH D +   + S  T I + L  +   + L
Sbjct: 63  NIVKLLDVIHTENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSYLFQLL 113
Query: 628 H--EICQPP-IVHRNFKSANIXXXXXXAVSVSDCGLA 661
                C    ++HR+ K  N+      A+ ++D GLA
Sbjct: 114 QGLSFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 150

>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 13/157 (8%)
Query: 509 NSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHA 567
            +F +   IG G  G VY+A+    G+++A+KK+     ++      +  ++ +  + H 
Sbjct: 5   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 64
Query: 568 NIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYL 627
           NIV+L        +  L++E+         LH D +   + S  T I + L  +   + L
Sbjct: 65  NIVKLLDVIHTENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSYLFQLL 115
Query: 628 H--EICQPP-IVHRNFKSANIXXXXXXAVSVSDCGLA 661
                C    ++HR+ K  N+      A+ ++D GLA
Sbjct: 116 QGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 152

>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 13/157 (8%)
Query: 509 NSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHA 567
            +F +   IG G  G VY+A+    G+++A+KK+     ++      +  ++ +  + H 
Sbjct: 5   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 64
Query: 568 NIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYL 627
           NIV+L        +  L++E+         LH D +   + S  T I + L  +   + L
Sbjct: 65  NIVKLLDVIHTENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSYLFQLL 115
Query: 628 H--EICQPP-IVHRNFKSANIXXXXXXAVSVSDCGLA 661
                C    ++HR+ K  N+      A+ ++D GLA
Sbjct: 116 QGLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLA 152

>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site Length = 300

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 13/157 (8%)
Query: 509 NSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHA 567
            +F +   IG G  G VY+A+    G+++A+KK+     ++      +  ++ +  + H 
Sbjct: 4   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 63
Query: 568 NIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYL 627
           NIV+L        +  L++E+         LH D +   + S  T I + L  +   + L
Sbjct: 64  NIVKLLDVIHTENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSYLFQLL 114
Query: 628 H--EICQPP-IVHRNFKSANIXXXXXXAVSVSDCGLA 661
                C    ++HR+ K  N+      A+ ++D GLA
Sbjct: 115 QGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 151

>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 13/157 (8%)
Query: 509 NSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHA 567
            +F +   IG G  G VY+A+    G+++A+KK+     ++      +  ++ +  + H 
Sbjct: 6   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 65
Query: 568 NIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYL 627
           NIV+L        +  L++E+         LH D +   + S  T I + L  +   + L
Sbjct: 66  NIVKLLDVIHTENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSYLFQLL 116
Query: 628 H--EICQPP-IVHRNFKSANIXXXXXXAVSVSDCGLA 661
                C    ++HR+ K  N+      A+ ++D GLA
Sbjct: 117 QGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 153

>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 301

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 13/157 (8%)
Query: 509 NSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHA 567
            +F +   IG G  G VY+A+    G+++A+KK+     ++      +  ++ +  + H 
Sbjct: 5   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 64
Query: 568 NIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYL 627
           NIV+L        +  L++E+         LH D +   + S  T I + L  +   + L
Sbjct: 65  NIVKLLDVIHTENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSYLFQLL 115
Query: 628 H--EICQPP-IVHRNFKSANIXXXXXXAVSVSDCGLA 661
                C    ++HR+ K  N+      A+ ++D GLA
Sbjct: 116 QGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 152

>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine Length = 299

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 13/157 (8%)
Query: 509 NSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHA 567
            +F +   IG G  G VY+A+    G+++A+KK+     ++      +  ++ +  + H 
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 568 NIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYL 627
           NIV+L        +  L++E+         LH D +   + S  T I + L  +   + L
Sbjct: 63  NIVKLLDVIHTENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSYLFQLL 113
Query: 628 H--EICQPP-IVHRNFKSANIXXXXXXAVSVSDCGLA 661
                C    ++HR+ K  N+      A+ ++D GLA
Sbjct: 114 QGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 150

>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED With The Inhibitor Nu2058 Length = 303

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 13/157 (8%)
Query: 509 NSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHA 567
            +F +   IG G  G VY+A+    G+++A+KK+     ++      +  ++ +  + H 
Sbjct: 7   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 66
Query: 568 NIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYL 627
           NIV+L        +  L++E+         LH D +   + S  T I + L  +   + L
Sbjct: 67  NIVKLLDVIHTENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSYLFQLL 117
Query: 628 H--EICQPP-IVHRNFKSANIXXXXXXAVSVSDCGLA 661
                C    ++HR+ K  N+      A+ ++D GLA
Sbjct: 118 QGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 154

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	689
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	9e-71
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	3e-65
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	2e-57
3soc_A	322	Activin receptor type-2A; structural genomics cons	1e-44
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-40
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-37
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-38
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-38
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-35
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-35
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-35
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-34
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-32
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-31
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-31
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-31
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-28
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	1e-37
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	9e-37
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	3e-35
3q4u_A	301	Activin receptor type-1; structural genomics conso	3e-35
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	5e-35
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	2e-34
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	2e-34
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	4e-34
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	8e-34
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	4e-33
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	4e-33
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	5e-32
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	8e-32
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	1e-31
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-27
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-27
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-27
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-26
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-25
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	2e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-13
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	8e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-05
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	6e-22
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	7e-22
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-22
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-04
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	9e-22
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	1e-21
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	1e-21
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	2e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	4e-21
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	4e-21
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	4e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-08
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	5e-21
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	7e-21
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	7e-21
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	8e-21
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	1e-20
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	1e-20
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	1e-20
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	1e-20
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	1e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-12
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	2e-20
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	2e-20
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	2e-20
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	2e-20
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	2e-20
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	2e-20
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	4e-20
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	4e-20
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	5e-20
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	5e-20
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-20
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	7e-20
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	7e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-15
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	8e-20
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	8e-20
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	9e-20
3pls_A	298	Macrophage-stimulating protein receptor; protein k	1e-19
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	1e-19
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	2e-19
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	2e-19
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	2e-19
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	2e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-06
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	4e-19
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	7e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-12
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	1e-18
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	1e-18
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	1e-18
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	1e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-13
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	2e-18
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	2e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-05
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	3e-18
4aoj_A	329	High affinity nerve growth factor receptor; transf	3e-18
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	3e-18
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	3e-18
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	4e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-13
2a19_B	284	Interferon-induced, double-stranded RNA-activated	8e-18
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-18
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-08
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	1e-17
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	1e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-15
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	1e-17
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	1e-17
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	1e-17
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	2e-17
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	3e-17
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	3e-17
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	4e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-12
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	5e-17
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	6e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-13
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	9e-17
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	1e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-06
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	2e-16
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	2e-16
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	3e-16
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	3e-16
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-16
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	4e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-04
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	5e-16
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	5e-16
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	5e-16
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	6e-16
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	6e-16
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	7e-16
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	8e-16
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	1e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-04
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	2e-15
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	2e-15
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	2e-15
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	2e-15
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	2e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-15
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	4e-15
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	4e-15
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	5e-15
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	6e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-06
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	7e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-04
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	1e-14
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-14
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	2e-14
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	3e-14
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-14
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-09
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	3e-14
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	4e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	5e-14
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	7e-14
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	1e-13
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	1e-13
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	2e-13
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	3e-13
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-13
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-06
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	3e-13
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	4e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-13
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-06
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	5e-13
3an0_A	340	Dual specificity mitogen-activated protein kinase;	7e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-04
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	9e-13
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	1e-12
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	1e-12
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	1e-12
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	2e-12
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-12
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	2e-12
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	2e-12
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	2e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-10
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	4e-12
3ork_A	311	Serine/threonine protein kinase; structural genomi	4e-12
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	5e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-10
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	5e-12
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	5e-12
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	5e-12
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	6e-12
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	6e-12
3bhy_A	283	Death-associated protein kinase 3; death associate	7e-12
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-12
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-09
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	9e-12
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-12
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	1e-11
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	1e-11
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	1e-11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-11
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	2e-11
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	3e-11
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	3e-11
2dyl_A	318	Dual specificity mitogen-activated protein kinase	3e-11
3fme_A	290	Dual specificity mitogen-activated protein kinase;	3e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-11
3aln_A	327	Dual specificity mitogen-activated protein kinase;	4e-11
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	5e-11
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	6e-11
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	6e-11
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	7e-11
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	7e-11
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	8e-11
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	8e-11
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	2e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-07
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	4e-10
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	4e-10
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	6e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-06
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	1e-09
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	2e-09
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	3e-09
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	3e-09
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	4e-09
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	5e-09
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	5e-09
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	7e-09
3uqc_A	286	Probable conserved transmembrane protein; structur	7e-09
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	9e-09
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	1e-08
3niz_A	311	Rhodanese family protein; structural genomics, str	2e-08
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	2e-08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-08
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	3e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-04
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	3e-08
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	3e-08
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	3e-08
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	4e-08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-05
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	5e-08
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	5e-08
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-07
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	5e-08
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	8e-08
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	9e-08
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	1e-07
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	1e-07
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	1e-07
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	2e-07
3o0g_A	292	Cell division protein kinase 5; kinase activator c	2e-07
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	2e-07
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	3e-07
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	3e-07
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	3e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	7e-04
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	4e-07
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	5e-07
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	6e-07
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	7e-07
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	8e-07
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	1e-06
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	2e-06
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	3e-06
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	3e-05
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	4e-05
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	4e-05
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	4e-05
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	7e-05
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	8e-05
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	8e-05
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	1e-04
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	1e-04
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	2e-04
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	2e-04
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	2e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	2e-06
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	3e-06
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	4e-06
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	4e-06
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	9e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	2e-05
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	2e-05
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	3e-05
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	1e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	2e-04
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	4e-04
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	5e-04
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	7e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	9e-04

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  232 bits (594), Expect = 9e-71
 Identities = 69/172 (40%), Positives = 104/172 (60%), Gaps = 1/172 (0%)

Query: 496 ARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFL 555
            + F++  LQ  +++FS +N++G G  G VY+ +L DG L+AVK+L K   +Q  + +F 
Sbjct: 17  LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRL-KEERTQGGELQFQ 75

Query: 556 ELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIR 615
             V  I    H N++ L+G+C    +RLL+Y Y +NG++   L    E +  L W  R R
Sbjct: 76  TEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQR 135

Query: 616 MALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG 667
           +ALG+AR L YLH+ C P I+HR+ K+ANILLD++    V D GLA L+   
Sbjct: 136 IALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYK 187

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  217 bits (555), Expect = 3e-65
 Identities = 60/180 (33%), Positives = 98/180 (54%), Gaps = 5/180 (2%)

Query: 494 TTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDE 553
             +    +  L++ TN+F  + LIG G+ G VY+  L DG  +A+K+      S Q  +E
Sbjct: 24  FESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRT--PESSQGIEE 81

Query: 554 FLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTR 613
           F   +  +   RH ++V L G+C E  + +LIY+Y  NG L+  L+  D    ++SW  R
Sbjct: 82  FETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQR 141

Query: 614 IRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVS 673
           + + +GAAR L YLH      I+HR+ KS NILLD++    ++D G++   +    + +S
Sbjct: 142 LEICIGAARGLHYLHT---RAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLS 198

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  195 bits (499), Expect = 2e-57
 Identities = 60/188 (31%), Positives = 98/188 (52%), Gaps = 13/188 (6%)

Query: 494 TTARSFTIASLQQYTNSFSQE------NLIGAGMLGSVYRAQLPDGKLLAVKKLDKRA-- 545
           T   SF+   L+  TN+F +       N +G G  G VY+  + +   +AVKKL      
Sbjct: 10  TRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDI 68

Query: 546 SSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELK 605
           ++++   +F + +  + + +H N+VEL G+ ++     L+Y Y  NG+L D L   D   
Sbjct: 69  TTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTP 128

Query: 606 NNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS 665
             LSW+ R ++A GAA  + +LHE      +HR+ KSANILLD+     +SD GLA    
Sbjct: 129 -PLSWHMRCKIAQGAANGINFLHE---NHHIHRDIKSANILLDEAFTAKISDFGLARASE 184

Query: 666 SGSVSQVS 673
             + + ++
Sbjct: 185 KFAQTVMT 192

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  161 bits (409), Expect = 1e-44
 Identities = 51/196 (26%), Positives = 80/196 (40%), Gaps = 22/196 (11%)

Query: 494 TTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDE 553
           ++       +L   +       +   G  G V++AQ    + +AVK        Q K   
Sbjct: 9   SSGVDLGTENLYFQSMPLQLLEVKARGRFGCVWKAQ-LLNEYVAVKIF----PIQDKQSW 63

Query: 554 FLEL-VNNIDRIRHANIVELKGYCAE----HGQRLLIYEYCSNGTLQDMLHSDDELKNNL 608
             E  V ++  ++H NI++  G             LI  +   G+L D L       N +
Sbjct: 64  QNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLK-----ANVV 118

Query: 609 SWNTRIRMALGAARALEYLHE-------ICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           SWN    +A   AR L YLHE         +P I HR+ KS N+LL ++L   ++D GLA
Sbjct: 119 SWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLA 178

Query: 662 PLISSGSVSQVSHNLT 677
               +G  +  +H   
Sbjct: 179 LKFEAGKSAGDTHGQV 194

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  148 bits (377), Expect = 3e-40
 Identities = 58/212 (27%), Positives = 89/212 (41%), Gaps = 30/212 (14%)

Query: 35  VTNPNDVAAINSLYAALGSP-VLPGWVASAGDPCGESWQGVQCNASDIIAIILNGANLGG 93
           + NP D  A+  +   LG+P  L  W+ +  D C  +W GV C+                
Sbjct: 2   LCNPQDKQALLQIKKDLGNPTTLSSWLPTT-DCCNRTWLGVLCD---------------- 44

Query: 94  ELGENLGAFSSIRVIDLSNNHIGGS--IPSILP--VTMQNFFLSD-NQFSGSIPSSLATL 148
                      +  +DLS  ++     IPS L     +   ++   N   G IP ++A L
Sbjct: 45  ----TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL 100

Query: 149 TLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQ 208
           T L  + + +  +SG IPD    +  L+ LD S N LSG LPPS+ +L  L  +    N+
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160

Query: 209 LSGTL-DVLQDLP--LRDLNIENNLFSGPIPE 237
           +SG + D           + I  N  +G IP 
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  141 bits (357), Expect = 2e-37
 Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 5/163 (3%)

Query: 86  LNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPS 143
           +   N+ G + + L    ++  +D S N + G++P  +     +       N+ SG+IP 
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 144 SLATLT-LLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTL 202
           S  + + L T M+++ N L+G+IP  F +L  L  +DLS N L G+      +      +
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 203 HLQNNQLSGTLDVLQDLP-LRDLNIENNLFSGPIPEKMLQIPN 244
           HL  N L+  L  +     L  L++ NN   G +P+ + Q+  
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  129 bits (326), Expect = 3e-33
 Identities = 36/152 (23%), Positives = 59/152 (38%), Gaps = 6/152 (3%)

Query: 90  NLGGELGENLGAFSS-IRVIDLSNNHIGGSIP-SILPVTMQNFFLSDNQFSGSIPSSLAT 147
            + G + ++ G+FS     + +S N + G IP +   + +    LS N   G       +
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS 219

Query: 148 LTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNN 207
                 + L  N L+ ++         L  LDL +N + G LP  L  L  L +L++  N
Sbjct: 220 DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278

Query: 208 QLSG---TLDVLQDLPLRDLNIENNLFSGPIP 236
            L G       LQ   +        L   P+P
Sbjct: 279 NLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  150 bits (382), Expect = 3e-38
 Identities = 58/175 (33%), Positives = 91/175 (52%), Gaps = 7/175 (4%)

Query: 77  NASDIIAIILNGANLGGELGENLGAFS-SIRVIDLSNNHIGGSIPSIL----PVTMQNFF 131
               +  + L+     GEL E+L   S S+  +DLS+N+  G I   L      T+Q  +
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400

Query: 132 LSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPP 191
           L +N F+G IP +L+  + L  + L+ N LSG IP +  SL+ L +L L  N L GE+P 
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460

Query: 192 SLENLSQLTTLHLQNNQLSGTL-DVLQDLP-LRDLNIENNLFSGPIPEKMLQIPN 244
            L  +  L TL L  N L+G +   L +   L  +++ NN  +G IP+ + ++ N
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  150 bits (381), Expect = 5e-38
 Identities = 55/174 (31%), Positives = 83/174 (47%), Gaps = 4/174 (2%)

Query: 75  QCNASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFL 132
           Q   + +  + L      G++   L   S +  + LS N++ G+IPS L     +++  L
Sbjct: 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449

Query: 133 SDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPS 192
             N   G IP  L  +  L  + L+ N L+GEIP    + T L  + LS+N L+GE+P  
Sbjct: 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509

Query: 193 LENLSQLTTLHLQNNQLSGTL-DVLQDLP-LRDLNIENNLFSGPIPEKMLQIPN 244
           +  L  L  L L NN  SG +   L D   L  L++  NLF+G IP  M +   
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  143 bits (363), Expect = 7e-36
 Identities = 53/167 (31%), Positives = 81/167 (48%), Gaps = 6/167 (3%)

Query: 76  CNASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLS 133
            N S+++++ L+   L G +  +LG+ S +R + L  N + G IP  L    T++   L 
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474

Query: 134 DNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSL 193
            N  +G IPS L+  T L  +SL+NN L+GEIP     L  L  L LS+N+ SG +P  L
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534

Query: 194 ENLSQLTTLHLQNNQLSGTL-DVLQDLPLRDLNIENNLFSGPIPEKM 239
            +   L  L L  N  +GT+   +         I  N  +G     +
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQS---GKIAANFIAGKRYVYI 578

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  143 bits (362), Expect = 1e-35
 Identities = 44/227 (19%), Positives = 80/227 (35%), Gaps = 40/227 (17%)

Query: 53  SPVLPGWVASAGDPCGESWQGVQCNASDIIAIILNGANLGGELGE--------------- 97
             +LP W ++  +PC  ++ GV C    + +I L+   L                     
Sbjct: 27  KNLLPDWSSNK-NPC--TFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLF 83

Query: 98  -----------NLGAFSSIRVIDLSNNHIGGSIPSILPV----TMQNFFLSDNQFSGSIP 142
                           +S+  +DLS N + G + ++  +     ++   +S N       
Sbjct: 84  LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143

Query: 143 -SSLATLTLLTDMSLNNNLLSGEIPDAFQ---SLTGLINLDLSSNNLSGELPPSLENLSQ 198
            S    L  L  + L+ N +SG     +        L +L +S N +SG++   +     
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVN 201

Query: 199 LTTLHLQNNQLSGTLDVLQDLP-LRDLNIENNLFSGPIPEKMLQIPN 244
           L  L + +N  S  +  L D   L+ L+I  N  SG     +     
Sbjct: 202 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTE 248

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  141 bits (359), Expect = 3e-35
 Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 8/169 (4%)

Query: 86  LNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQN---FFLSDNQFSGSIP 142
           L+G +  G +    G+ S +  + LS+N+  G +P    + M+      LS N+FSG +P
Sbjct: 301 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 360

Query: 143 SSLATLTL-LTDMSLNNNLLSGEIPDAF--QSLTGLINLDLSSNNLSGELPPSLENLSQL 199
            SL  L+  L  + L++N  SG I           L  L L +N  +G++PP+L N S+L
Sbjct: 361 ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 420

Query: 200 TTLHLQNNQLSGTL-DVLQDLP-LRDLNIENNLFSGPIPEKMLQIPNFR 246
            +LHL  N LSGT+   L  L  LRDL +  N+  G IP++++ +    
Sbjct: 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  140 bits (354), Expect = 9e-35
 Identities = 56/157 (35%), Positives = 81/157 (51%), Gaps = 11/157 (7%)

Query: 90  NLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQN---FFLSDNQFSGSIPSSLA 146
              G +        S++ + L+ N   G IP  L           LS N F G++P    
Sbjct: 258 QFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315

Query: 147 TLTLLTDMSLNNNLLSGEIP-DAFQSLTGLINLDLSSNNLSGELPPSLENLS-QLTTLHL 204
           + +LL  ++L++N  SGE+P D    + GL  LDLS N  SGELP SL NLS  L TL L
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375

Query: 205 QNNQLSGTL--DVLQDLP--LRDLNIENNLFSGPIPE 237
            +N  SG +  ++ Q+    L++L ++NN F+G IP 
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  139 bits (352), Expect = 2e-34
 Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 9/160 (5%)

Query: 84  IILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSI 141
           + ++  N    +   LG  S+++ +D+S N + G     +     ++   +S NQF G I
Sbjct: 205 LDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263

Query: 142 PSSLATLTLLTDMSLNNNLLSGEIPDA-FQSLTGLINLDLSSNNLSGELPPSLENLSQLT 200
           P     L  L  +SL  N  +GEIPD    +   L  LDLS N+  G +PP   + S L 
Sbjct: 264 PPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321

Query: 201 TLHLQNNQLSGTL--DVLQDLP-LRDLNIENNLFSGPIPE 237
           +L L +N  SG L  D L  +  L+ L++  N FSG +PE
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  131 bits (332), Expect = 6e-32
 Identities = 40/158 (25%), Positives = 78/158 (49%), Gaps = 9/158 (5%)

Query: 86  LNGANLGGELGENLGA-FSSIRVIDLSNNHIGGSIPSILPVT-----MQNFFLSDNQFSG 139
           ++   L      + G   +S+ V+DLS N I G+      ++     +++  +S N+ SG
Sbjct: 133 VSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG 192

Query: 140 SIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQL 199
            +   ++    L  + +++N  S  IP      + L +LD+S N LSG+   ++   ++L
Sbjct: 193 DVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTEL 249

Query: 200 TTLHLQNNQLSGTLDVLQDLPLRDLNIENNLFSGPIPE 237
             L++ +NQ  G +  L    L+ L++  N F+G IP+
Sbjct: 250 KLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPD 287

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  129 bits (327), Expect = 2e-31
 Identities = 38/160 (23%), Positives = 64/160 (40%), Gaps = 2/160 (1%)

Query: 90  NLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPSSLAT 147
            L GE+ + L    ++  + L  N + G IPS L     +    LS+N+ +G IP  +  
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512

Query: 148 LTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNN 207
           L  L  + L+NN  SG IP        LI LDL++N  +G +P ++   S     +    
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572

Query: 208 QLSGTLDVLQDLPLRDLNIENNLFSGPIPEKMLQIPNFRK 247
           +    +                 F G   E++ ++     
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  129 bits (326), Expect = 3e-31
 Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 2/138 (1%)

Query: 76  CNASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLS 133
                      N     G   E L   S+    ++++   GG          +M    +S
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640

Query: 134 DNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSL 193
            N  SG IP  + ++  L  ++L +N +SG IPD    L GL  LDLSSN L G +P ++
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700

Query: 194 ENLSQLTTLHLQNNQLSG 211
             L+ LT + L NN LSG
Sbjct: 701 SALTMLTEIDLSNNNLSG 718

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  128 bits (323), Expect = 8e-31
 Identities = 50/229 (21%), Positives = 88/229 (38%), Gaps = 54/229 (23%)

Query: 76  CNASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPS-------------- 121
               ++  + L+  +  G +   LG   S+  +DL+ N   G+IP+              
Sbjct: 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 570

Query: 122 --ILPVTMQNFFL--------SDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQS 171
                V ++N  +        +  +F G     L  L+     ++ + +  G     F +
Sbjct: 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630

Query: 172 LTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSG-------------TLDV--- 215
              ++ LD+S N LSG +P  + ++  L  L+L +N +SG              LD+   
Sbjct: 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690

Query: 216 ---------LQDLP-LRDLNIENNLFSGPIPEKMLQIPNFRKD---GNP 251
                    +  L  L ++++ NN  SGPIPE M Q   F       NP
Sbjct: 691 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNP 738

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  119 bits (300), Expect = 4e-28
 Identities = 44/179 (24%), Positives = 74/179 (41%), Gaps = 12/179 (6%)

Query: 76  CNASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPS---ILPVTMQNFFL 132
                +  +IL+  +L GE+   L   +++  I LSNN + G IP     L   +    L
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE-NLAILKL 521

Query: 133 SDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPS 192
           S+N FSG+IP+ L     L  + LN NL +G IP A    +      +++N ++G+    
Sbjct: 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKRYVY 577

Query: 193 LENLSQLTTLHLQNN--QLSGTL-DVLQDLP-LRDLNIENNLFSGPIPEKMLQIPNFRK 247
           ++N       H   N  +  G   + L  L      NI + ++ G          +   
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score =  141 bits (357), Expect = 1e-37
 Identities = 59/157 (37%), Positives = 85/157 (54%), Gaps = 3/157 (1%)

Query: 514 ENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELK 573
           +  IGAG  G+V+RA+   G  +AVK L ++    ++ +EFL  V  + R+RH NIV   
Sbjct: 42  KEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFM 100

Query: 574 GYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQP 633
           G   +     ++ EY S G+L  +LH     +  L    R+ MA   A+ + YLH    P
Sbjct: 101 GAVTQPPNLSIVTEYLSRGSLYRLLH-KSGAREQLDERRRLSMAYDVAKGMNYLHN-RNP 158

Query: 634 PIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVS 670
           PIVHRN KS N+L+D    V V D GL+ L +S  +S
Sbjct: 159 PIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLS 195

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score =  139 bits (353), Expect = 9e-37
 Identities = 45/184 (24%), Positives = 73/184 (39%), Gaps = 22/184 (11%)

Query: 508 TNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLEL-VNNIDRIRH 566
            ++     LIG G  G+VY+  L D + +AVK      S   + +   E  +  +  + H
Sbjct: 12  LDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVF----SFANRQNFINEKNIYRVPLMEH 66

Query: 567 ANIVELKGYCAE-----HGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAA 621
            NI                + LL+ EY  NG+L   L       +   W +  R+A    
Sbjct: 67  DNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLS-----LHTSDWVSSCRLAHSVT 121

Query: 622 RALEYLHE------ICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSHN 675
           R L YLH         +P I HR+  S N+L+ +D    +SD GL+  ++   + +    
Sbjct: 122 RGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEE 181

Query: 676 LTIM 679
               
Sbjct: 182 DNAA 185

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score =  133 bits (338), Expect = 3e-35
 Identities = 32/150 (21%), Positives = 63/150 (42%), Gaps = 6/150 (4%)

Query: 514 ENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELK 573
              +     G +++ +   G  + VK L  R  S +K  +F E    +    H N++ + 
Sbjct: 15  LTKLNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVL 73

Query: 574 GYCAE--HGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEIC 631
           G C         LI  +   G+L ++LH        +  +  ++ AL  AR + +LH   
Sbjct: 74  GACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFV--VDQSQAVKFALDMARGMAFLHT-L 130

Query: 632 QPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           +P I      S ++++D+D+   +S   + 
Sbjct: 131 EPLIPRHALNSRSVMIDEDMTARISMADVK 160

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score =  134 bits (339), Expect = 3e-35
 Identities = 47/167 (28%), Positives = 69/167 (41%), Gaps = 20/167 (11%)

Query: 514 ENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLEL-VNNIDRIRHANIVEL 572
              +G G  G V+R     G+ +AVK      SS+ +   F E  + N   +RH NI+  
Sbjct: 13  LECVGKGRYGEVWRGSW-QGENVAVKIF----SSRDEKSWFRETELYNTVMLRHENILGF 67

Query: 573 KGYC----AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
                       Q  LI  Y   G+L D L         L   + +R+ L  A  L +LH
Sbjct: 68  IASDMTSRHSSTQLWLITHYHEMGSLYDYLQ-----LTTLDTVSCLRIVLSIASGLAHLH 122

Query: 629 E-----ICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVS 670
                   +P I HR+ KS NIL+  +    ++D GLA + S  +  
Sbjct: 123 IEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQ 169

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score =  133 bits (336), Expect = 2e-34
 Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 20/165 (12%)

Query: 514 ENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLEL-VNNIDRIRHANIVEL 572
           +  IG G  G V+R +   G+ +AVK      SS+++   F E  +     +RH NI+  
Sbjct: 47  QESIGKGRFGEVWRGKW-RGEEVAVKIF----SSREERSWFREAEIYQTVMLRHENILGF 101

Query: 573 KGYCAEHG----QRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
                +      Q  L+ +Y  +G+L D L+     +  ++    I++AL  A  L +LH
Sbjct: 102 IAADNKDNGTWTQLWLVSDYHEHGSLFDYLN-----RYTVTVEGMIKLALSTASGLAHLH 156

Query: 629 E-----ICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
                   +P I HR+ KS NIL+  +    ++D GLA    S +
Sbjct: 157 MEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSAT 201

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score =  132 bits (335), Expect = 2e-34
 Identities = 43/165 (26%), Positives = 68/165 (41%), Gaps = 20/165 (12%)

Query: 514 ENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLEL-VNNIDRIRHANIVEL 572
              IG G  G V+  +   G+ +AVK       + ++   F E  +     +RH NI+  
Sbjct: 42  VKQIGKGRYGEVWMGKW-RGEKVAVKVF----FTTEEASWFRETEIYQTVLMRHENILGF 96

Query: 573 KGYC----AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
                       Q  LI +Y  NG+L D L         L   + +++A  +   L +LH
Sbjct: 97  IAADIKGTGSWTQLYLITDYHENGSLYDYLK-----STTLDAKSMLKLAYSSVSGLCHLH 151

Query: 629 E-----ICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
                   +P I HR+ KS NIL+  +    ++D GLA    S +
Sbjct: 152 TEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDT 196

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score =  131 bits (332), Expect = 4e-34
 Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 9/160 (5%)

Query: 514 ENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELK 573
           E ++G G  G V +A+    K +A+K+++    S+ +   F+  +  + R+ H NIV+L 
Sbjct: 13  EEVVGRGAFGVVCKAKW-RAKDVAIKQIE----SESERKAFIVELRQLSRVNHPNIVKLY 67

Query: 574 GYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQP 633
           G C       L+ EY   G+L ++LH  +      +    +   L  ++ + YLH +   
Sbjct: 68  GACLNP--VCLVMEYAEGGSLYNVLHGAEP-LPYYTAAHAMSWCLQCSQGVAYLHSMQPK 124

Query: 634 PIVHRNFKSANILLDDDLAVS-VSDCGLAPLISSGSVSQV 672
            ++HR+ K  N+LL     V  + D G A  I +   +  
Sbjct: 125 ALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTNNK 164

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score =  130 bits (330), Expect = 8e-34
 Identities = 51/202 (25%), Positives = 83/202 (41%), Gaps = 12/202 (5%)

Query: 480 GTAVKTSTKTAKPFTTARSFTIASLQQYTNSFSQ---ENLIGAGMLGSVYRAQLPDGKLL 536
           G  +  S  +A+ F    S T   LQ++   F Q     LIG G  G VY  +   G++ 
Sbjct: 1   GPEMNLSLLSARSFPRKASQTSIFLQEWDIPFEQLEIGELIGKGRFGQVYHGRW-HGEV- 58

Query: 537 AVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQD 596
           A++ +D    ++ +   F   V    + RH N+V   G C       +I   C   TL  
Sbjct: 59  AIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITSLCKGRTLYS 118

Query: 597 MLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVS 656
           ++      K  L  N   ++A    + + YLH      I+H++ KS N+  D+   V ++
Sbjct: 119 VVRDA---KIVLDVNKTRQIAQEIVKGMGYLH---AKGILHKDLKSKNVFYDNGK-VVIT 171

Query: 657 DCGLAPLISSGSVSQVSHNLTI 678
           D GL  +       +    L I
Sbjct: 172 DFGLFSISGVLQAGRREDKLRI 193

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score =  128 bits (323), Expect = 4e-33
 Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 17/159 (10%)

Query: 514 ENLIGAGMLGSVYRAQ-LPDGKLLAVKKL-----DKRASSQQKDDEFLELVNNIDRIRHA 567
           E  IG G  G V++ + + D  ++A+K L     +      +K  EF   V  +  + H 
Sbjct: 24  EKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHP 83

Query: 568 NIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYL 627
           NIV+L G         ++ E+   G L   L       + + W+ ++R+ L  A  +EY+
Sbjct: 84  NIVKLYGLMHN--PPRMVMEFVPCGDLYHRLLDK---AHPIKWSVKLRLMLDIALGIEYM 138

Query: 628 HEICQPPIVHRNFKSANILLD-----DDLAVSVSDCGLA 661
                PPIVHR+ +S NI L        +   V+D GL+
Sbjct: 139 QN-QNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLS 176

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score =  127 bits (322), Expect = 4e-33
 Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 16/167 (9%)

Query: 514 ENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKD--DEFLELVNNIDRIRHANIVE 571
           E +IG G  G VYRA    G  +AVK              +   +       ++H NI+ 
Sbjct: 12  EEIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIA 70

Query: 572 LKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEIC 631
           L+G C +     L+ E+   G L  +L         +  +  +  A+  AR + YLH+  
Sbjct: 71  LRGVCLKEPNLCLVMEFARGGPLNRVLS-----GKRIPPDILVNWAVQIARGMNYLHDEA 125

Query: 632 QPPIVHRNFKSANILLDDDLA--------VSVSDCGLAPLISSGSVS 670
             PI+HR+ KS+NIL+   +         + ++D GLA      +  
Sbjct: 126 IVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKM 172

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score =  125 bits (315), Expect = 5e-32
 Identities = 50/155 (32%), Positives = 75/155 (48%), Gaps = 9/155 (5%)

Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYC 576
           IG+G  G+VY+ +   G + AVK L+  A + Q+   F   V  + + RH NI+   GY 
Sbjct: 32  IGSGSFGTVYKGKW-HGDV-AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 89

Query: 577 AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIV 636
               Q  ++ ++C   +L   LH+    +        I +A   AR ++YLH      I+
Sbjct: 90  TAP-QLAIVTQWCEGSSLYHHLHA---SETKFEMKKLIDIARQTARGMDYLH---AKSII 142

Query: 637 HRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQ 671
           HR+ KS NI L +D  V + D GLA   S  S S 
Sbjct: 143 HRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSH 177

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score =  124 bits (313), Expect = 1e-31
 Identities = 41/158 (25%), Positives = 74/158 (46%), Gaps = 9/158 (5%)

Query: 514 ENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVEL 572
             ++G G  G   +      G+++ +K+L +     Q+   FL+ V  +  + H N+++ 
Sbjct: 15  GEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRT--FLKEVKVMRCLEHPNVLKF 72

Query: 573 KGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQ 632
            G   +  +   I EY   GTL+ ++ S D   +   W+ R+  A   A  + YLH +  
Sbjct: 73  IGVLYKDKRLNFITEYIKGGTLRGIIKSMD---SQYPWSQRVSFAKDIASGMAYLHSM-- 127

Query: 633 PPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVS 670
             I+HR+  S N L+ ++  V V+D GLA L+      
Sbjct: 128 -NIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQ 164

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  120 bits (302), Expect = 2e-28
 Identities = 30/168 (17%), Positives = 59/168 (35%), Gaps = 10/168 (5%)

Query: 95  LGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQN---FFLSDNQFSGSIPSSLATLTLL 151
           +  N      +  +D  ++++       + ++++N     +S      +       L+ L
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 152 TDMSLNNNLLSGEI-PDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLS 210
             + +  N       PD F  L  L  LDLS   L    P +  +LS L  L++ +N   
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507

Query: 211 GTL-DVLQDLP-LRDLNIENNLFSGPIPEKMLQIPNFRK----DGNPF 252
                  + L  L+ L+   N       +++   P+         N F
Sbjct: 508 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  117 bits (295), Expect = 1e-27
 Identities = 36/168 (21%), Positives = 63/168 (37%), Gaps = 7/168 (4%)

Query: 76  CNASDIIAIILNGANLGGEL-GENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFL 132
                +  +    +NL          +  ++  +D+S+ H   +   I     +++   +
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452

Query: 133 SDNQFSGSI-PSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPP 191
           + N F  +  P     L  LT + L+   L    P AF SL+ L  L++S NN       
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 512

Query: 192 SLENLSQLTTLHLQNNQLSGT-LDVLQDLP--LRDLNIENNLFSGPIP 236
             + L+ L  L    N +  +    LQ  P  L  LN+  N F+    
Sbjct: 513 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  117 bits (294), Expect = 1e-27
 Identities = 43/220 (19%), Positives = 75/220 (34%), Gaps = 26/220 (11%)

Query: 65  DPCGESWQG--VQCNASDIIAII-----------LNGANLGGELGENLGAFSSIRVIDLS 111
           +PC E       QC   +   I            L+   L      +  +F  ++V+DLS
Sbjct: 1   EPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS 60

Query: 112 NNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAF 169
              I             +    L+ N        + + L+ L  +      L+       
Sbjct: 61  RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120

Query: 170 QSLTGLINLDLSSNNL-SGELPPSLENLSQLTTLHLQNNQLSG----TLDVLQDLPLRD- 223
             L  L  L+++ N + S +LP    NL+ L  L L +N++       L VL  +PL + 
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

Query: 224 -LNIENNLFSGPIPEKMLQIPNFRK---DGNPFNSTVAPS 259
            L++  N  +  I     +     K     N  +  V  +
Sbjct: 181 SLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKT 219

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  117 bits (294), Expect = 2e-27
 Identities = 31/163 (19%), Positives = 59/163 (36%), Gaps = 5/163 (3%)

Query: 87  NGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVT-MQNFFLSDNQFSGSIPSS- 144
           NG +  G   ++    +S++ +DLS N +     + L +  +++     +        S 
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

Query: 145 LATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPP-SLENLSQLTTLH 203
             +L  L  + +++          F  L+ L  L ++ N+      P     L  LT L 
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476

Query: 204 LQNNQLSGTL-DVLQDLP-LRDLNIENNLFSGPIPEKMLQIPN 244
           L   QL          L  L+ LN+ +N F          + +
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 519

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  111 bits (280), Expect = 8e-26
 Identities = 32/151 (21%), Positives = 64/151 (42%), Gaps = 8/151 (5%)

Query: 99  LGAFSSIRVIDLSNNHIGGSIPSIL--PVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSL 156
             + S +  + L+ N I            ++Q     +   +      +  L  L ++++
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131

Query: 157 -NNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLT----TLHLQNNQLSG 211
            +N + S ++P+ F +LT L +LDLSSN +       L  L Q+     +L L  N ++ 
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

Query: 212 T-LDVLQDLPLRDLNIENNLFSGPIPEKMLQ 241
                 +++ L  L + NN  S  + +  +Q
Sbjct: 192 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 222

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  107 bits (269), Expect = 2e-24
 Identities = 33/160 (20%), Positives = 53/160 (33%), Gaps = 9/160 (5%)

Query: 86  LNGANLGGELGENLGAFSSIRVIDLSNNHIG--GSIPSIL--PVTMQNFFLSDNQFSGSI 141
           L   +  G    +     S+  +DLS N +   G          +++   LS N     +
Sbjct: 330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-M 388

Query: 142 PSSLATLTLLTDMSLNNNLLSGEIP-DAFQSLTGLINLDLSSNNLSGELPPSLENLSQLT 200
            S+   L  L  +   ++ L        F SL  LI LD+S  +           LS L 
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 201 TLHLQNNQLSGTL--DVLQDLP-LRDLNIENNLFSGPIPE 237
            L +  N        D+  +L  L  L++         P 
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 93.2 bits (232), Expect = 6e-20
 Identities = 27/155 (17%), Positives = 46/155 (29%), Gaps = 8/155 (5%)

Query: 90  NLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLT 149
               ++ +     +++    L +  I            Q+  L + +F       L +L 
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK 328

Query: 150 LLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLS--GELPPSLENLSQLTTLHLQNN 207
                 L      G    +   L  L  LDLS N LS  G    S    + L  L L  N
Sbjct: 329 -----RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 208 QLSGTLDVLQDLP-LRDLNIENNLFSGPIPEKMLQ 241
            +         L  L  L+ +++         +  
Sbjct: 384 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 85.5 bits (212), Expect = 2e-17
 Identities = 31/203 (15%), Positives = 64/203 (31%), Gaps = 41/203 (20%)

Query: 92  GGELGENLGAFSSIRVIDLSNNHIGGSIPSI------LPVTMQNFFLSDNQFSGSIPSSL 145
             +L E     +++  +DLS+N I     +       +P+   +  LS N  +   P + 
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 146 ATLTLLTDMSLNNNLLSGEIPDA----------------------------FQSLTGLIN 177
             + L   ++L NN  S  +                                 +L GL N
Sbjct: 198 KEIRLHK-LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256

Query: 178 LDLSSNNLS------GELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLPLRDLNIENNLF 231
           L +    L+       ++      L+ +++  L +  +    D   +   + L + N  F
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF 316

Query: 232 SGPIPEKMLQIPNFRKDGNPFNS 254
                 K+  +       N   +
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGN 339

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 77.0 bits (190), Expect = 8e-15
 Identities = 19/143 (13%), Positives = 42/143 (29%), Gaps = 30/143 (20%)

Query: 91  LGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPSSLATL 148
               L +      ++  +DLS   +    P+      ++Q   +S N F          L
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 517

Query: 149 TLLTDMSLNNNLLSGEIPDAFQSL-TGLINLDLSSNNLSG-------------------- 187
             L  +  + N +        Q   + L  L+L+ N+ +                     
Sbjct: 518 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVE 577

Query: 188 ------ELPPSLENLSQLTTLHL 204
                   P   + +  + +L++
Sbjct: 578 VERMECATPSDKQGMP-VLSLNI 599

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.7 bits (153), Expect = 2e-10
 Identities = 24/197 (12%), Positives = 53/197 (26%), Gaps = 40/197 (20%)

Query: 84  IILNGANLGGELGEN-LGAFSSIRVIDLSNNHIGGS--IPSILPVTMQN---FFLSDNQF 137
           + L        + +  +   + + V  L          +       ++      + + + 
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 138 S------GSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPP 191
           +        I      LT ++  SL +  +      ++    G  +L+L +     + P 
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFG-QFPT 321

Query: 192 --------------------SLENLSQLTTLHLQNNQLSG---TLDVLQDLP-LRDLNIE 227
                               S  +L  L  L L  N LS              L+ L++ 
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 228 NNLFSGPIPEKMLQIPN 244
            N     +    L +  
Sbjct: 382 FNGVIT-MSSNFLGLEQ 397

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.6 bits (132), Expect = 7e-08
 Identities = 17/103 (16%), Positives = 40/103 (38%), Gaps = 6/103 (5%)

Query: 84  IILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSI---LPVTMQNFFLSDNQFSGS 140
           + ++  N            +S++V+D S NHI  S        P ++    L+ N F+ +
Sbjct: 499 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 558

Query: 141 IPSS--LATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLS 181
                 L  +     + +    +    P   Q +  +++L+++
Sbjct: 559 CEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP-VLSLNIT 600

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  118 bits (298), Expect = 7e-28
 Identities = 41/190 (21%), Positives = 69/190 (36%), Gaps = 9/190 (4%)

Query: 79  SDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQ 136
           ++I  + L    L      N   +S +  +D+  N I    P +      ++   L  N+
Sbjct: 25  TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84

Query: 137 FSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENL 196
            S     + A  T LT++ L +N +     + F     LI LDLS N LS     +   L
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144

Query: 197 SQLTTLHLQNNQLSG----TLDVLQDLPLRDLNIENNLFSGPIPEKMLQIPNFRK---DG 249
             L  L L NN++       LD+  +  L+ L + +N      P     I        + 
Sbjct: 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204

Query: 250 NPFNSTVAPS 259
                ++   
Sbjct: 205 VQLGPSLTEK 214

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  115 bits (291), Expect = 4e-27
 Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 3/143 (2%)

Query: 104 SIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSG 163
           S  V D S+  +   +P  LP  +    L+ NQ      ++    + LT + +  N +S 
Sbjct: 5   SHEVADCSHLKLT-QVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 164 EIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSG-TLDVLQDLP-L 221
             P+  Q L  L  L+L  N LS     +    + LT LHL +N +     +       L
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123

Query: 222 RDLNIENNLFSGPIPEKMLQIPN 244
             L++ +N  S       +Q+ N
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLEN 146

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  110 bits (276), Expect = 3e-25
 Identities = 43/167 (25%), Positives = 67/167 (40%), Gaps = 15/167 (8%)

Query: 86  LNGANLGGEL-GENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSG--S 140
           L    +G EL G+      +I  I LS N       +      ++Q   L         S
Sbjct: 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS 471

Query: 141 IPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLS--------GELPPS 192
            PS    L  LT + L+NN ++    D  + L  L  LDL  NNL+        G     
Sbjct: 472 SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYF 531

Query: 193 LENLSQLTTLHLQNNQLSG-TLDVLQDLP-LRDLNIENNLFSGPIPE 237
           L+ LS L  L+L++N      ++V +DL  L+ +++  N  +     
Sbjct: 532 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  108 bits (272), Expect = 1e-24
 Identities = 29/174 (16%), Positives = 62/174 (35%), Gaps = 15/174 (8%)

Query: 84  IILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFF--------LSDN 135
           + +   ++ G          +++ + LSN+    S+ ++   T  +          L+ N
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT--SLRTLTNETFVSLAHSPLHILNLTKN 391

Query: 136 QFSGSIPSSLATLTLLTDMSLNNNLLSGEIP-DAFQSLTGLINLDLSSNNLSGELPPSLE 194
           + S     + + L  L  + L  N +  E+    ++ L  +  + LS N        S  
Sbjct: 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA 451

Query: 195 NLSQLTTLHLQNNQLSG---TLDVLQDLP-LRDLNIENNLFSGPIPEKMLQIPN 244
            +  L  L L+   L     +    Q L  L  L++ NN  +    + +  +  
Sbjct: 452 LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 505

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  107 bits (270), Expect = 2e-24
 Identities = 46/167 (27%), Positives = 69/167 (41%), Gaps = 15/167 (8%)

Query: 86  LNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQN---FFLSDNQFSGSIP 142
           L    +     +       + V+DL  N IG  +       ++N    +LS N++     
Sbjct: 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR 447

Query: 143 SSLATLTLLTDMSLNNNLLSG--EIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLT 200
           +S A +  L  + L    L      P  FQ L  L  LDLS+NN++      LE L +L 
Sbjct: 448 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLE 507

Query: 201 TLHLQNNQLS---------GTLDVLQDLP-LRDLNIENNLFSGPIPE 237
            L LQ+N L+         G +  L+ L  L  LN+E+N F     E
Sbjct: 508 ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  106 bits (267), Expect = 4e-24
 Identities = 37/169 (21%), Positives = 65/169 (38%), Gaps = 17/169 (10%)

Query: 84  IILNGANLGGELGENLGAF---SSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFS 138
           ++L    L   +  +   F    ++ ++DLSNN+I      +L     ++   L  N  +
Sbjct: 459 LMLRRVALKN-VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517

Query: 139 --------GSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELP 190
                   G     L  L+ L  ++L +N       + F+ L  L  +DL  NNL+    
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 191 PSLENLSQLTTLHLQNNQLSGT-LDVLQDLP--LRDLNIENNLFSGPIP 236
               N   L +L+LQ N ++     V       L +L++  N F     
Sbjct: 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  106 bits (266), Expect = 5e-24
 Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 11/163 (6%)

Query: 86  LNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPS 143
           L   ++            ++  +DLS+N +  +          +Q   LS+N+       
Sbjct: 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163

Query: 144 SLATLTL--LTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSL---ENLSQ 198
            L       L  + L++N +    P  F ++  L  L L++  L   L   L      + 
Sbjct: 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS 223

Query: 199 LTTLHLQNNQLSG----TLDVLQDLPLRDLNIENNLFSGPIPE 237
           +  L L N+QLS     T   L+   L  L++  N  +    +
Sbjct: 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND 266

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  105 bits (264), Expect = 9e-24
 Identities = 38/170 (22%), Positives = 67/170 (39%), Gaps = 18/170 (10%)

Query: 86  LNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPV-----TMQNFFLSDNQFSGS 140
           L+   +         A   +  + L+N  +G S+   L +     +++N  LS++Q S +
Sbjct: 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237

Query: 141 IPSSLATLTL--LTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQ 198
             ++   L    LT + L+ N L+    D+F  L  L    L  NN+      SL  L  
Sbjct: 238 SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN 297

Query: 199 LTTLHLQNNQLSGTL----------DVLQDLP-LRDLNIENNLFSGPIPE 237
           +  L+L+ +    ++             Q L  L  LN+E+N   G    
Sbjct: 298 VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  102 bits (257), Expect = 6e-23
 Identities = 35/172 (20%), Positives = 60/172 (34%), Gaps = 18/172 (10%)

Query: 99  LGAFSSIRVIDLSNNHIGG--SIPSILP--VTMQNFFLSDNQFSGSIPSSLATLTLLTDM 154
                S++ + L    +    S PS       +    LS+N  +      L  L  L  +
Sbjct: 450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 509

Query: 155 SLNNNLLS--------GEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQN 206
            L +N L+        G      + L+ L  L+L SN          ++L +L  + L  
Sbjct: 510 DLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569

Query: 207 NQLSGTL-DVLQDLP-LRDLNIENNLFSGPIPEKML----QIPNFRKDGNPF 252
           N L+     V  +   L+ LN++ NL +    +        +       NPF
Sbjct: 570 NNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  102 bits (255), Expect = 1e-22
 Identities = 34/153 (22%), Positives = 57/153 (37%), Gaps = 17/153 (11%)

Query: 102 FSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNN 159
           ++++ ++DLS N++             ++ FFL  N        SL  L  +  ++L  +
Sbjct: 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306

Query: 160 L---------LSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLS 210
                     L      +FQ L  L +L++  N++ G        L  L  L L N+  S
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366

Query: 211 ------GTLDVLQDLPLRDLNIENNLFSGPIPE 237
                  T   L   PL  LN+  N  S    +
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  100 bits (251), Expect = 3e-22
 Identities = 29/157 (18%), Positives = 60/157 (38%), Gaps = 9/157 (5%)

Query: 86  LNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPS 143
           ++ A+L      +      +  +++ +N I G   ++    + ++   LS++  S    +
Sbjct: 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT 371

Query: 144 SLA----TLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPS-LENLSQ 198
           +        + L  ++L  N +S    DAF  L  L  LDL  N +  EL       L  
Sbjct: 372 NETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN 431

Query: 199 LTTLHLQNNQLSGTL-DVLQDLP-LRDLNIENNLFSG 233
           +  ++L  N+      +    +P L+ L +       
Sbjct: 432 IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 96.6 bits (241), Expect = 6e-21
 Identities = 32/183 (17%), Positives = 61/183 (33%), Gaps = 17/183 (9%)

Query: 76  CNASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPS-----------ILP 124
              +++  + L+  NL     ++      +    L  N+I                  L 
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304

Query: 125 VTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNN 184
            +     +S          S   L  L  +++ +N + G   + F  L  L  L LS++ 
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364

Query: 185 LSGELPPS--LENL--SQLTTLHLQNNQLSGTL-DVLQDLP-LRDLNIENNLFSGPIPEK 238
            S     +    +L  S L  L+L  N++S    D    L  L  L++  N     +  +
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424

Query: 239 MLQ 241
             +
Sbjct: 425 EWR 427

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 88.9 bits (221), Expect = 1e-18
 Identities = 25/158 (15%), Positives = 46/158 (29%), Gaps = 8/158 (5%)

Query: 86  LNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPS 143
           L      G     L   S + +++L +N        +      ++   L  N  +    S
Sbjct: 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578

Query: 144 SLATLTLLTDMSLNNNLLSGEIPDAFQ-SLTGLINLDLSSNNLSGELPPSLE-----NLS 197
                  L  ++L  NL++      F  +   L  LD+  N                N +
Sbjct: 579 VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINET 638

Query: 198 QLTTLHLQNNQLSGTLDVLQDLPLRDLNIENNLFSGPI 235
                 L ++ L  T       P+R  +  +   S   
Sbjct: 639 HTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCKDSAHH 676

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  109 bits (275), Expect = 3e-25
 Identities = 22/182 (12%), Positives = 63/182 (34%), Gaps = 19/182 (10%)

Query: 76  CNASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLS 133
            + SD+I   +N       + ++         I   +N+I   +   +     ++ F++ 
Sbjct: 156 EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMG 214

Query: 134 DNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSL 193
           ++ F                 +             + +L  L ++++ +     +LP  L
Sbjct: 215 NSPFVAENICEAWENE-----NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269

Query: 194 ENLSQLTTLHLQNNQLSGTLDVLQDLP----------LRDLNI-ENNLFSGPIPEKMLQI 242
           + L ++  +++  N+      +  D            ++ + I  NNL + P+   + ++
Sbjct: 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKM 329

Query: 243 PN 244
             
Sbjct: 330 KK 331

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  107 bits (269), Expect = 2e-24
 Identities = 31/175 (17%), Positives = 67/175 (38%), Gaps = 26/175 (14%)

Query: 94  ELGENLGAFSSIRVIDLSNNHIGGSIPSILPV----TMQNFFLSDNQFSG-------SIP 142
                      +  +  ++N +   IP+I        M     S N+           + 
Sbjct: 371 NFCGFT---EQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426

Query: 143 SSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSG-------ELPPSLEN 195
            +      ++ ++L+NN +S    + F + + L +++L  N L+        +   + +N
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486

Query: 196 LSQLTTLHLQNNQLSGTLDVLQD--LP-LRDLNIENNLFSGPIPEKMLQIPNFRK 247
              LT++ L+ N+L+   D  +   LP L  +++  N FS   P + L     + 
Sbjct: 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKG 540

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  107 bits (269), Expect = 2e-24
 Identities = 29/173 (16%), Positives = 66/173 (38%), Gaps = 17/173 (9%)

Query: 86  LNGANLGGELGENLGAFSSIRVIDLSNNHI--------GGSIPSILPVT--MQNFFLSDN 135
           +       +L   L A   +++I+++ N               +  PV   +Q  ++  N
Sbjct: 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315

Query: 136 QF-SGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSL- 193
              +  + +SL  +  L  +    N L G++P AF S   L +L+L+ N ++  +P +  
Sbjct: 316 NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE-IPANFC 373

Query: 194 ENLSQLTTLHLQNNQLSGTLDVLQ--DLP-LRDLNIENNLFSGPIPEKMLQIP 243
               Q+  L   +N+L    ++     +  +  ++   N       +    + 
Sbjct: 374 GFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  107 bits (269), Expect = 2e-24
 Identities = 37/172 (21%), Positives = 61/172 (35%), Gaps = 22/172 (12%)

Query: 89  ANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSIL--PVTMQNFFLSDNQFSG------- 139
                 L        ++  I+LSNN I      +      + +  L  N  +        
Sbjct: 419 GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK 478

Query: 140 SIPSSLATLTLLTDMSLNNNLLSGEIPDAFQ--SLTGLINLDLSSNNLSGELPPSLENLS 197
               +     LLT + L  N L+  + D F+  +L  L+ +DLS N+ S   P    N S
Sbjct: 479 DENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSS 536

Query: 198 QLTTLHLQN------NQLSGTL-DVLQDLP-LRDLNIENNLFSGPIPEKMLQ 241
            L    ++N      N+      + +   P L  L I +N     + EK+  
Sbjct: 537 TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKITP 587

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 99.0 bits (247), Expect = 9e-22
 Identities = 23/161 (14%), Positives = 61/161 (37%), Gaps = 21/161 (13%)

Query: 97  ENLGAFSSIRVIDLSNNHIGGSIPSI--LPVTMQNFFLSDNQFSGSIPSSLA--TLTLLT 152
              G+   +  ++L+ N I     +       ++N   + N+    IP+     ++++++
Sbjct: 347 PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMS 405

Query: 153 DMSLNNNLLSGEIPDAFQS-------LTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQ 205
            +  + N +       F            + +++LS+N +S          S L++++L 
Sbjct: 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLM 465

Query: 206 NNQLSG-TLDVLQDLP--------LRDLNIENNLFSGPIPE 237
            N L+    + L+D          L  +++  N  +    +
Sbjct: 466 GNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 97.8 bits (244), Expect = 2e-21
 Identities = 31/177 (17%), Positives = 54/177 (30%), Gaps = 32/177 (18%)

Query: 84  IILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNF---------FLSD 134
           I L+   +     E     S +  I+L  N +     + L    +NF          L  
Sbjct: 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497

Query: 135 NQFSGSIPSSLA--TLTLLTDMSLNNNLLSGEIPDAFQSLTGLI------NLDLSSNNLS 186
           N+ +  +       TL  L  + L+ N  S   P    + + L         D   N   
Sbjct: 498 NKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTL 555

Query: 187 GELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP------LRDLNIENNLFSGPIPE 237
            E P  +     LT L + +N +         +       +  L+I++N        
Sbjct: 556 REWPEGITLCPSLTQLQIGSNDIRK-------VNEKITPNISVLDIKDNPNISIDLS 605

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 94.3 bits (235), Expect = 3e-20
 Identities = 27/196 (13%), Positives = 55/196 (28%), Gaps = 11/196 (5%)

Query: 59  WVASAGDPCGESWQGVQCNASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGS 118
           W A  G     S QG                  G + G +L +   +  + L      G 
Sbjct: 39  WDALNGKNW--SQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGR 96

Query: 119 IPSILP--VTMQNFFLSDNQFSG----SIPSSLATLTLLTDMSLNNNLLSGEIPDA--FQ 170
           +P  +     ++   L  +          P  ++                    D    +
Sbjct: 97  VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRE 156

Query: 171 SLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP-LRDLNIENN 229
             + LI   ++S+     +  S     + T +   +N ++     +  L  LR   + N+
Sbjct: 157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNS 216

Query: 230 LFSGPIPEKMLQIPNF 245
            F      +  +  N 
Sbjct: 217 PFVAENICEAWENENS 232

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 83.9 bits (208), Expect = 6e-17
 Identities = 15/121 (12%), Positives = 32/121 (26%), Gaps = 14/121 (11%)

Query: 99  LGAFSSIRVIDLSNNHIGGSIPS---------ILPVTMQNFFLSDNQFSGSIPSSLATLT 149
                 +  IDLS N      P+            +         N+     P  +    
Sbjct: 509 ATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR-NQRDAQGNRTLREWPEGITLCP 566

Query: 150 LLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQL 209
            LT + + +N +   + +       +  LD+  N         +    +     L  ++ 
Sbjct: 567 SLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

Query: 210 S 210
            
Sbjct: 624 Q 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.7 bits (158), Expect = 6e-11
 Identities = 13/101 (12%), Positives = 30/101 (29%), Gaps = 11/101 (10%)

Query: 171 SLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLD------VLQDLPLRDL 224
           S   +  L L     SG +P ++  L++L  L L ++             +  ++     
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 225 NIENNLFSGPIP-----EKMLQIPNFRKDGNPFNSTVAPSR 260
                 +          E    +     + +P   ++  S 
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 16/97 (16%), Positives = 27/97 (27%), Gaps = 9/97 (9%)

Query: 85  ILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSS 144
              G     E  E +    S+  + + +N I      I P  +    + DN       S 
Sbjct: 548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITP-NISVLDIKDNPNISIDLSY 606

Query: 145 LATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLS 181
           +          L  +          Q + G   LD+ 
Sbjct: 607 VCPYIEAGMYMLFYDKT--------QDIRGCDALDIK 635

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score =  105 bits (263), Expect = 2e-24
 Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 8/161 (4%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLL-AVKKLDKRASSQQKDDEFLELVNNIDRIRHA 567
                   IG G  G V+  +L     L AVK   +      K   FL+    + +  H 
Sbjct: 114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAK-FLQEARILKQYSHP 172

Query: 568 NIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYL 627
           NIV L G C +     ++ E    G     L ++      L   T ++M   AA  +EYL
Sbjct: 173 NIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTE---GARLRVKTLLQMVGDAAAGMEYL 229

Query: 628 HEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
                   +HR+  + N L+ +   + +SD G++   + G 
Sbjct: 230 ESK---CCIHRDLAARNCLVTEKNVLKISDFGMSREEADGV 267

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  107 bits (269), Expect = 2e-24
 Identities = 30/144 (20%), Positives = 48/144 (33%), Gaps = 3/144 (2%)

Query: 106 RVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEI 165
           +  +  N  +   IP  LP + +    S N       ++ + L  LT + L    +    
Sbjct: 15  KTYNCENLGLN-EIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 166 PDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSG-TLDVLQDLP-LRD 223
            D FQS   L  L L++N L      +L     L  L      +S      L +   L  
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133

Query: 224 LNIENNLFSGPIPEKMLQIPNFRK 247
           L + +N  S     K       + 
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKV 157

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  103 bits (258), Expect = 4e-23
 Identities = 30/190 (15%), Positives = 55/190 (28%), Gaps = 10/190 (5%)

Query: 79  SDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQ 136
           +    +  +   L            ++  +DL+   I             +    L+ N 
Sbjct: 33  NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 137 FSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENL 196
                 ++L+    L  +      +S        +   L +L L SN++S    P     
Sbjct: 93  LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152

Query: 197 SQLTTLHLQNNQLS----GTLDVLQDLPLRDLNIENNLFSGPIPEKMLQIPNFRK---DG 249
            +L  L  QNN +       +  LQ      LN+  N  +G I         F+     G
Sbjct: 153 EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGG 211

Query: 250 NPFNSTVAPS 259
                 +   
Sbjct: 212 TQNLLVIFKG 221

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  102 bits (255), Expect = 9e-23
 Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 10/163 (6%)

Query: 103 SSIRVIDLSNNHIGGSIPSILPVTMQN---FFLSDNQFSGSIPSSLATLTLLTDMSLNNN 159
             + ++DL+   +           +       LS +    S       L  L  ++L  N
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459

Query: 160 LLSGEI---PDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSG-TLDV 215
                     ++ Q+L  L  L LS  +LS     +  +L  +  + L +N+L+  +++ 
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519

Query: 216 LQDLPLRDLNIENNLFSGPIPEKMLQIPNFRK---DGNPFNST 255
           L  L    LN+ +N  S  +P  +  +   R      NP + T
Sbjct: 520 LSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 95.5 bits (238), Expect = 1e-20
 Identities = 39/164 (23%), Positives = 58/164 (35%), Gaps = 13/164 (7%)

Query: 86  LNGANLGGELGEN-LGAFSSIRVIDLSNNHIGGSIPSI-----LPVTMQNFFLSDNQFSG 139
           + G     ELG   L    ++R +DLS++ I  S         L   +Q+  LS N+   
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS-HLQSLNLSYNEPLS 390

Query: 140 SIPSSLATLTLLTDMSLNNNLLSGEIPD-AFQSLTGLINLDLSSNNLSGELPPSLENLSQ 198
               +      L  + L    L  +     FQ+L  L  L+LS + L        + L  
Sbjct: 391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450

Query: 199 LTTLHLQNNQLSG----TLDVLQDLP-LRDLNIENNLFSGPIPE 237
           L  L+LQ N          + LQ L  L  L +     S     
Sbjct: 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 94.3 bits (235), Expect = 3e-20
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 8/142 (5%)

Query: 99  LGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSI---PSSLATLTLLTD 153
                 ++V++LS++ +  S   +      +Q+  L  N F        +SL TL  L  
Sbjct: 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480

Query: 154 MSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGT- 212
           + L+   LS     AF SL  + ++DLS N L+     +L +L  +  L+L +N +S   
Sbjct: 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIIL 539

Query: 213 LDVLQDLP-LRDLNIENNLFSG 233
             +L  L   R +N+  N    
Sbjct: 540 PSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 94.3 bits (235), Expect = 3e-20
 Identities = 39/169 (23%), Positives = 68/169 (40%), Gaps = 8/169 (4%)

Query: 76  CNASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLS 133
                + +I L               FS ++ +DL+  H+   +PS L    T++   LS
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLS 309

Query: 134 DNQFSGSIPSSLATLTLLTDMSLNNNLLSGEI-PDAFQSLTGLINLDLSSNNL--SGELP 190
            N+F      S +    LT +S+  N    E+     ++L  L  LDLS +++  S    
Sbjct: 310 ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369

Query: 191 PSLENLSQLTTLHLQNNQLSG-TLDVLQDLP-LRDLNIENNLFSGPIPE 237
             L NLS L +L+L  N+      +  ++ P L  L++          +
Sbjct: 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ 418

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 93.9 bits (234), Expect = 3e-20
 Identities = 30/155 (19%), Positives = 61/155 (39%), Gaps = 10/155 (6%)

Query: 84  IILNGANLGGELGENLG--AFSSIRVIDLSNNHIGGSIPSILP----VTMQNFFLSDNQF 137
           +   G      + + L      S+ +    +       P++      +++++  L  + F
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266

Query: 138 SGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLS 197
                ++    + L ++ L    LS E+P     L+ L  L LS+N        S  N  
Sbjct: 267 FNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325

Query: 198 QLTTLHLQNNQLSGTL--DVLQDLP-LRDLNIENN 229
            LT L ++ N     L    L++L  LR+L++ ++
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 92.4 bits (230), Expect = 1e-19
 Identities = 31/160 (19%), Positives = 54/160 (33%), Gaps = 9/160 (5%)

Query: 90  NLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP----VTMQNFFLSDNQFSGSIPSSL 145
           N    +       +  + ++         I   L      ++      D       P+  
Sbjct: 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248

Query: 146 ATLTL--LTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLH 203
             L    +  ++L  +       + F   +GL  LDL++ +LS ELP  L  LS L  L 
Sbjct: 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLV 307

Query: 204 LQNNQLSGTLD-VLQDLP-LRDLNIENNLFSGPIPEKMLQ 241
           L  N+          + P L  L+I+ N     +    L+
Sbjct: 308 LSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.0 bits (177), Expect = 3e-13
 Identities = 24/159 (15%), Positives = 52/159 (32%), Gaps = 13/159 (8%)

Query: 98  NLGAFS---SIRVIDLSNNHIGGSIPSILPV----TMQNFFLSDNQFSGSIPSSLATLTL 150
            L        ++V+D  NN I       +      T  +  L+ N  +G  P +  +   
Sbjct: 145 KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVF 204

Query: 151 LT-DMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLS--QLTTLHLQNN 207
            + +     NLL         ++  L        +     P   E L    + +++LQ +
Sbjct: 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264

Query: 208 QLSGTL-DVLQDLP-LRDLNIENNLFSGPIPEKMLQIPN 244
                  +       L++L++     S  +P  ++ +  
Sbjct: 265 YFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLST 302

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  107 bits (268), Expect = 2e-24
 Identities = 26/175 (14%), Positives = 51/175 (29%), Gaps = 9/175 (5%)

Query: 90  NLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQN---FFLSDNQFSGSIPSSLA 146
           N    +  N      ++ +D  ++ +         ++++      +S             
Sbjct: 386 NGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445

Query: 147 TLTLLTDMSL-NNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQ 205
            LT L  + +  N+     + + F + T L  LDLS   L        + L +L  L++ 
Sbjct: 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505

Query: 206 NNQLSG-TLDVLQDLP-LRDLNIENNLFSGPIPEKMLQIPNFRK---DGNPFNST 255
           +N L          L  L  L+   N              +        N     
Sbjct: 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 560

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  107 bits (268), Expect = 2e-24
 Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 4/146 (2%)

Query: 104 SIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSG 163
                   +  +   +P  +P + +N  LS N        S +  + L  + L+   +  
Sbjct: 12  PNITYQCMDQKLS-KVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET 70

Query: 164 EIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSG-TLDVLQDLP-L 221
               A+  L  L NL L+ N +    P S   L+ L  L     +L+      +  L  L
Sbjct: 71  IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130

Query: 222 RDLNIENNLFSG-PIPEKMLQIPNFR 246
           + LN+ +N      +P     + N  
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLV 156

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  102 bits (255), Expect = 9e-23
 Identities = 40/193 (20%), Positives = 69/193 (35%), Gaps = 13/193 (6%)

Query: 79  SDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQ 136
           S    I L+   L      +   FS ++ +DLS   I             + N  L+ N 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 137 FSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSG-ELPPSLEN 195
                P S + LT L ++      L+         L  L  L+++ N +   +LP    N
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 196 LSQLTTLHLQNNQLSG----TLDVLQDLP--LRDLNIENNLFSGPIPEKMLQIPNFRK-- 247
           L+ L  + L  N +       L  L++ P     L++  N     I ++  Q     +  
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELT 210

Query: 248 -DGNPFNSTVAPS 259
             GN  +S +  +
Sbjct: 211 LRGNFNSSNIMKT 223

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 95.9 bits (239), Expect = 8e-21
 Identities = 30/153 (19%), Positives = 62/153 (40%), Gaps = 11/153 (7%)

Query: 100 GAFS---SIRVIDLSNNHIGGSIPSIL--PVTMQNFFLSDNQFSGSIPSSLATLTLLTDM 154
            A+     +  + L+ N I    P       +++N    + + +      +  L  L  +
Sbjct: 74  KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133

Query: 155 SLNNNLLSG-EIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLT----TLHLQNNQL 209
           ++ +N +   ++P  F +LT L+++DLS N +       L+ L +      +L +  N +
Sbjct: 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI 193

Query: 210 SG-TLDVLQDLPLRDLNIENNLFSGPIPEKMLQ 241
                   Q + L +L +  N  S  I +  LQ
Sbjct: 194 DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQ 226

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 94.3 bits (235), Expect = 3e-20
 Identities = 30/149 (20%), Positives = 52/149 (34%), Gaps = 9/149 (6%)

Query: 97  ENLGAFSSIRVIDLSNNHIGGSIPSILP----VTMQNFFLSDNQFSGSIPSSLATLTLLT 152
               A  S+  +DLS N +  S           ++++  LS N     + ++   L  L 
Sbjct: 344 FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQ 402

Query: 153 DMSLNNNLLSGEIP-DAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSG 211
            +   ++ L       AF SL  L+ LD+S  N   +       L+ L TL +  N    
Sbjct: 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD 462

Query: 212 TL--DVLQDLP-LRDLNIENNLFSGPIPE 237
               +V  +   L  L++           
Sbjct: 463 NTLSNVFANTTNLTFLDLSKCQLEQISWG 491

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 91.2 bits (227), Expect = 2e-19
 Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 3/128 (2%)

Query: 86  LNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQN---FFLSDNQFSGSIP 142
           ++  N   +        +S+  + ++ N    +  S +     N     LS  Q      
Sbjct: 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW 490

Query: 143 SSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTL 202
               TL  L  +++++N L       +  L  L  LD S N +             L   
Sbjct: 491 GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFF 550

Query: 203 HLQNNQLS 210
           +L NN ++
Sbjct: 551 NLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 80.5 bits (199), Expect = 6e-16
 Identities = 31/159 (19%), Positives = 48/159 (30%), Gaps = 8/159 (5%)

Query: 86  LNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSL 145
           L   N   +        +++  + L+   I            Q+  +   Q        L
Sbjct: 268 LTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDL 327

Query: 146 ATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENL--SQLTTLH 203
             L  L   +L  N  S  I     +L  L  LDLS N LS     S  +L  + L  L 
Sbjct: 328 PFLKSL---TLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382

Query: 204 LQNNQLSGTLDVLQDLP-LRDLNIENNLFSGPIPEKMLQ 241
           L  N           L  L+ L+ +++            
Sbjct: 383 LSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFL 421

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 77.4 bits (191), Expect = 6e-15
 Identities = 21/141 (14%), Positives = 41/141 (29%), Gaps = 10/141 (7%)

Query: 103 SSIRVIDLSNNHIGGSIPSIL-PVTMQNFFLSDNQFSGSIP-------SSLATLTLLTDM 154
                +D+S N I          + +    L  N  S +I        + L    L+   
Sbjct: 181 QVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE 240

Query: 155 SLNNNLLSGEIPDAFQSLTGL--INLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGT 212
             +   L    P   + L  +      L+  N   +       L+ ++ + L    +   
Sbjct: 241 FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL 300

Query: 213 LDVLQDLPLRDLNIENNLFSG 233
            DV +    + L+I       
Sbjct: 301 EDVPKHFKWQSLSIIRCQLKQ 321

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.4 bits (173), Expect = 8e-13
 Identities = 27/156 (17%), Positives = 48/156 (30%), Gaps = 18/156 (11%)

Query: 94  ELGENLGAFSSIRVIDLSNNHIGGSIPSI------LPVTMQNFFLSDNQFSGSIPSSLAT 147
           +L       +++  +DLS N+I     +        P    +  +S N        +   
Sbjct: 144 KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG 203

Query: 148 LTLLTDMSLNNNLLSGEIP-DAFQSLTGLINLDLSSNNLSGEL------PPSLENLSQLT 200
           + L   ++L  N  S  I     Q+L GL    L       E       P  +E L  +T
Sbjct: 204 IKLHE-LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262

Query: 201 TLHL---QNNQLSGTLDVLQDLP-LRDLNIENNLFS 232
                    N  S  +     L  +  +++      
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK 298

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 98.2 bits (245), Expect = 8e-23
 Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 15/165 (9%)

Query: 516 LIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKG 574
            IG G   +VY+         +A  +L  R  ++ +   F E    +  ++H NIV    
Sbjct: 33  EIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYD 92

Query: 575 YC---AEHGQRLLIY-EYCSNGTLQDMLHSDDELKNNL--SWNTRIRMALGAARALEYLH 628
                 +  + +++  E  ++GTL+  L     +K  +  SW  +I       + L++LH
Sbjct: 93  SWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQI------LKGLQFLH 146

Query: 629 EICQPPIVHRNFKSANILLDDDL-AVSVSDCGLAPLISSGSVSQV 672
               PPI+HR+ K  NI +     +V + D GLA L  +     V
Sbjct: 147 T-RTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAV 190

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  100 bits (250), Expect = 5e-22
 Identities = 25/169 (14%), Positives = 54/169 (31%), Gaps = 17/169 (10%)

Query: 82  IAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQN---FFLSDNQFS 138
                        L ++      I++  +  N++     S     M          N+  
Sbjct: 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR 586

Query: 139 GSIPSSLATLTLLTDMSLNNNLLSGEIP-DAFQSLTGLINLDLSSNNLSGELPP--SLEN 195
                +  T   LTD+ L+ N +  EIP D       +  L  S N L   +P   + ++
Sbjct: 587 --HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKS 642

Query: 196 LSQLTTLHLQNNQLSG-------TLDVLQDLPLRDLNIENNLFSGPIPE 237
           +  + ++    N++         ++D  + +    + +  N       E
Sbjct: 643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTE 691

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 96.1 bits (239), Expect = 1e-20
 Identities = 34/175 (19%), Positives = 57/175 (32%), Gaps = 22/175 (12%)

Query: 86  LNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFS----- 138
           +           +     +   + LS N I      +      +    LS+N  +     
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN 715

Query: 139 --GSIPSSLATLTLLTDMSLNNNLLSGEIPD--AFQSLTGLINLDLSSNNLSGELPPSLE 194
                  +     LLT + L  N L+  + D     +L  L N+D+S N  S   P    
Sbjct: 716 SLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPL 773

Query: 195 NLSQLTTLHLQ------NNQLSGTL-DVLQDLP-LRDLNIENNLFSGPIPEKMLQ 241
           N SQL    ++       N++       +   P L  L I +N     + EK+  
Sbjct: 774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKLTP 827

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 96.1 bits (239), Expect = 1e-20
 Identities = 24/177 (13%), Positives = 58/177 (32%), Gaps = 19/177 (10%)

Query: 77  NASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSD 134
           N SD++   +N       + ++         I    N I   I   +     +Q  + ++
Sbjct: 399 NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT-FISKAIQRLTKLQIIYFAN 457

Query: 135 NQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLE 194
           + F+    +         D + +          ++ +L  L +++L +     +LP  L 
Sbjct: 458 SPFTYDNIA-----VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512

Query: 195 NLSQLTTLHLQNNQLSGTLDVLQDLP-----------LRDLNIENNLFSGPIPEKML 240
           +L +L +L++  N+      +  D             ++   +  N          L
Sbjct: 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL 569

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 95.3 bits (237), Expect = 2e-20
 Identities = 36/192 (18%), Positives = 58/192 (30%), Gaps = 33/192 (17%)

Query: 86  LNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFF----------LSDN 135
           L+   +     E     S I  I LSNN +  SIP          +          L  N
Sbjct: 680 LSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFN 738

Query: 136 QFSGSIPSSLA--TLTLLTDMSLNNNLLSGEIPDAFQSLTGLI------NLDLSSNNLSG 187
           + + S+       TL  L++M ++ N  S   P    + + L         D   N +  
Sbjct: 739 KLT-SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILR 796

Query: 188 ELPPSLENLSQLTTLHLQNNQLSG----TLDVLQDLPLRDLNIENNLFSGPI----PEKM 239
           + P  +     L  L + +N +          L  L + D    N   S  +    P   
Sbjct: 797 QWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIAD----NPNISIDVTSVCPYIE 852

Query: 240 LQIPNFRKDGNP 251
             +     D   
Sbjct: 853 AGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 94.9 bits (236), Expect = 2e-20
 Identities = 26/177 (14%), Positives = 61/177 (34%), Gaps = 19/177 (10%)

Query: 86  LNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVT-----------MQNFFLSD 134
           L       +L + L     ++ ++++ N    +       T           +Q F++  
Sbjct: 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557

Query: 135 NQFSGSIPS-SLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSL 193
           N       S SL  +  L  +   +N +     +AF +   L +L L  N +  E+P   
Sbjct: 558 NNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIE-EIPEDF 614

Query: 194 -ENLSQLTTLHLQNNQLSGTLDV--LQDLP-LRDLNIENNLFSGPIPEKMLQIPNFR 246
                Q+  L   +N+L    ++   + +  +  ++   N            + +++
Sbjct: 615 CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 93.8 bits (233), Expect = 7e-20
 Identities = 27/224 (12%), Positives = 66/224 (29%), Gaps = 33/224 (14%)

Query: 52  GSPVLPGWVASAGDPCGESWQGVQC-NASDIIAIILNGANLGGELGENLGAFSSIRVIDL 110
            +     W  +          GV   N   +  + L G    G + + +G  + ++V+  
Sbjct: 295 NTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSF 354

Query: 111 SNNHIGGSIPSILPVTM---------QNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLL 161
             +    S        +             +   +        L    LL D    N  +
Sbjct: 355 GTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM 414

Query: 162 SGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSG---------- 211
                D+  SL     +   +N ++  +  +++ L++L  ++  N+  +           
Sbjct: 415 KPIKKDSRISLKDT-QIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDA 472

Query: 212 ---TLDVLQDLP--------LRDLNIENNLFSGPIPEKMLQIPN 244
                   ++          L D+ + N      +P+ +  +P 
Sbjct: 473 NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE 516

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 92.6 bits (230), Expect = 1e-19
 Identities = 30/192 (15%), Positives = 61/192 (31%), Gaps = 45/192 (23%)

Query: 99  LGAFSSIRVIDLSNNHIGGSIPSILPVT--MQNFFLSDNQFSGSIPS--SLATLTLLTDM 154
            G    +  + L  N I          T  ++    S N+    IP+  +  ++ ++  +
Sbjct: 591 FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSV 649

Query: 155 SLNNNLLSGEIPDAFQSLTG-----LINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQL 209
             + N +  E  +   S+          + LS N +           S ++T+ L NN +
Sbjct: 650 DFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709

Query: 210 SG--------------------TLDV----LQDLP----------LRDLNIENNLFSGPI 235
           +                     T+D+    L  L           L ++++  N FS   
Sbjct: 710 TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-F 768

Query: 236 PEKMLQIPNFRK 247
           P + L     + 
Sbjct: 769 PTQPLNSSQLKA 780

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.4 bits (162), Expect = 2e-11
 Identities = 9/113 (7%), Positives = 35/113 (30%), Gaps = 3/113 (2%)

Query: 133 SDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPS 192
            + ++     ++        + +   ++   +      +   +  L L+     G +P +
Sbjct: 284 KNWRYYSGTINNTIHSLN-WNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDA 342

Query: 193 LENLSQLTTLHLQNNQLSGTLDV--LQDLPLRDLNIENNLFSGPIPEKMLQIP 243
           +  L++L  L    +  + +  +   ++L         +       +  L   
Sbjct: 343 IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYD 395

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.3 bits (159), Expect = 4e-11
 Identities = 22/140 (15%), Positives = 40/140 (28%), Gaps = 9/140 (6%)

Query: 106 RVIDLSNNHIGGSIPSILPVTMQ-NFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGE 164
             +D  N        +    ++  NF    + +       L     +T +SL      G 
Sbjct: 279 EALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGR 338

Query: 165 IPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLS--------GTLDVL 216
           +PDA   LT L  L   +++ +       +          + +++              L
Sbjct: 339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL 398

Query: 217 QDLPLRDLNIENNLFSGPIP 236
               L    I  N    PI 
Sbjct: 399 NLSDLLQDAINRNPEMKPIK 418

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.3 bits (107), Expect = 6e-05
 Identities = 10/77 (12%), Positives = 25/77 (32%), Gaps = 2/77 (2%)

Query: 85  ILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQF-SGSIPS 143
              G  +  +    +    S+  + + +N I   +   L   +    ++DN   S  + S
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNPNISIDVTS 846

Query: 144 SLATLTLLTDMSLNNNL 160
               +     + L +  
Sbjct: 847 VCPYIEAGMYVLLYDKT 863

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 95.4 bits (238), Expect = 6e-22
 Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 7/159 (4%)

Query: 516 LIGAGMLGSVYRAQ-LPDGKLLAVKKLDK-RASSQQKDDEFLELVNNIDRIRHANIVELK 573
            IG G  G   + +   DGK+L  K+LD    +  +K     E VN +  ++H NIV   
Sbjct: 13  TIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSE-VNLLRELKHPNIVRYY 71

Query: 574 G-YCAEHGQRLLIY-EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEIC 631
                     L I  EYC  G L  ++    + +  L     +R+      AL+  H   
Sbjct: 72  DRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRS 131

Query: 632 QPP--IVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
                ++HR+ K AN+ LD    V + D GLA +++  +
Sbjct: 132 DGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDT 170

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 97.1 bits (242), Expect = 7e-22
 Identities = 50/244 (20%), Positives = 89/244 (36%), Gaps = 24/244 (9%)

Query: 428 RRDDHEIDMSSLDMMMMPPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTST 487
               H    +S+   ++ P   P                 +         +E    + + 
Sbjct: 10  HHHHHGRRRASVAAGILVPRGSPGLDGICSIEELSTSLYKKA-------GSENLYFQGAN 62

Query: 488 KTAKPFTTARSFTIASLQQYTNSFSQENL-----IGAGMLGSVYRAQL--PDGKLL--AV 538
                 +      + ++Q      S   +     IG G  G VY   L   DGK +  AV
Sbjct: 63  TVHIDLSALNPELVQAVQHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAV 122

Query: 539 KKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEH-GQRLLIYEYCSNGTLQDM 597
           K L++     +    FL     +    H N++ L G C    G  L++  Y  +G L++ 
Sbjct: 123 KSLNRITDIGEVSQ-FLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNF 181

Query: 598 LHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSD 657
           + ++    +N +    I   L  A+ +++L        VHR+  + N +LD+   V V+D
Sbjct: 182 IRNET---HNPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVAD 235

Query: 658 CGLA 661
            GLA
Sbjct: 236 FGLA 239

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 92.7 bits (231), Expect = 9e-22
 Identities = 26/138 (18%), Positives = 59/138 (42%), Gaps = 3/138 (2%)

Query: 97  ENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSL 156
             +    +I+ + ++N H     P      ++   +     +     +L+ LT LT + +
Sbjct: 60  TGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 157 NNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVL 216
           +++     I     +L  + ++DLS N    ++ P L+ L +L +L++Q + +      +
Sbjct: 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVH-DYRGI 177

Query: 217 QDLP-LRDLNIENNLFSG 233
           +D P L  L   +    G
Sbjct: 178 EDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 84.6 bits (210), Expect = 5e-19
 Identities = 23/130 (17%), Positives = 58/130 (44%), Gaps = 5/130 (3%)

Query: 102 FSSIRVIDLSNNHIGGSIPSILPVT-MQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNL 160
            +S+  I L+N ++   +  I     +++  +++   +    + ++ L+ L  + +    
Sbjct: 43  MNSLTYITLANINVT-DLTGIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKD 99

Query: 161 LSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP 220
           ++ +       LT L  LD+S +     +   +  L ++ ++ L  N     +  L+ LP
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLP 159

Query: 221 -LRDLNIENN 229
            L+ LNI+ +
Sbjct: 160 ELKSLNIQFD 169

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 20/126 (15%), Positives = 51/126 (40%), Gaps = 25/126 (19%)

Query: 86  LNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSL 145
           + G ++  +   NL   +S+ ++D+S++                          SI + +
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAH----------------------DDSILTKI 132

Query: 146 ATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQ 205
            TL  +  + L+ N    +I    ++L  L +L++  + +  +    +E+  +L  L+  
Sbjct: 133 NTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVH-DYRG-IEDFPKLNQLYAF 189

Query: 206 NNQLSG 211
           +  + G
Sbjct: 190 SQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 7/67 (10%)

Query: 164 EIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP-LR 222
            IPD+  +    +N  L  ++ +     +   ++ LT + L N  ++  L  ++    ++
Sbjct: 16  NIPDS--TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT-DLTGIEYAHNIK 69

Query: 223 DLNIENN 229
           DL I N 
Sbjct: 70  DLTINNI 76

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 96.5 bits (241), Expect = 9e-22
 Identities = 35/162 (21%), Positives = 70/162 (43%), Gaps = 11/162 (6%)

Query: 97  ENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSL 156
             +   + +  + L+ N I    P     ++  F    NQ +   P  +A +T L  + +
Sbjct: 171 TPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKI 228

Query: 157 NNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVL 216
            NN ++   P    +L+ L  L++ +N +S     ++++L++L  L++ +NQ+S  + VL
Sbjct: 229 GNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD-ISVL 283

Query: 217 QDLP-LRDLNIENNLFSGPIPEKMLQIPNFRK---DGNPFNS 254
            +L  L  L + NN       E +  + N        N    
Sbjct: 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 93.0 bits (232), Expect = 1e-20
 Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 9/142 (6%)

Query: 97  ENLGAFSSIRVIDLSNNHIGGSIPSILPVT-MQNFFLSDNQFSGSIPSSLATLTLLTDMS 155
                  SI  + ++   +  SI  I  +T ++   L+ NQ +   P  L+ L  LT++ 
Sbjct: 38  VTQEELESITKLVVAGEKV-ASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLY 94

Query: 156 LNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDV 215
           +  N ++     A Q+LT L  L L+ +N+S      L NL+++ +L+L  N     L  
Sbjct: 95  IGTNKIT--DISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSP 150

Query: 216 LQDLP-LRDLNIENNLFSGPIP 236
           L ++  L  L +  +      P
Sbjct: 151 LSNMTGLNYLTVTESKVKDVTP 172

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 91.8 bits (229), Expect = 3e-20
 Identities = 29/141 (20%), Positives = 64/141 (45%), Gaps = 7/141 (4%)

Query: 97  ENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSL 156
           + +   +++  ++L+ N I    P    V + N ++  N+ +    S+L  LT L ++ L
Sbjct: 60  QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYL 117

Query: 157 NNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVL 216
           N + +S        +LT + +L+L +N+        L N++ L  L +  +++   +  +
Sbjct: 118 NEDNISD--ISPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKD-VTPI 173

Query: 217 QDLP-LRDLNIENNLFSGPIP 236
            +L  L  L++  N      P
Sbjct: 174 ANLTDLYSLSLNYNQIEDISP 194

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 91.4 bits (228), Expect = 4e-20
 Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 9/142 (6%)

Query: 97  ENLGAFSSIRVIDLSNNHIGGSIP-SILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMS 155
             L   +++R + L+ ++I    P + L   M +  L  N    S  S L+ +T L  ++
Sbjct: 104 SALQNLTNLRELYLNEDNISDISPLANLT-KMYSLNLGANHNL-SDLSPLSNMTGLNYLT 161

Query: 156 LNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDV 215
           +  + +    P    +LT L +L L+ N +       L +L+ L       NQ++  +  
Sbjct: 162 VTESKVKDVTP--IANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITD-ITP 216

Query: 216 LQDLP-LRDLNIENNLFSGPIP 236
           + ++  L  L I NN  +   P
Sbjct: 217 VANMTRLNSLKIGNNKITDLSP 238

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 89.9 bits (224), Expect = 1e-19
 Identities = 28/135 (20%), Positives = 59/135 (43%), Gaps = 8/135 (5%)

Query: 97  ENLGAFSSIRVIDLSNNHIGGSIPSILPVT-MQNFFLSDNQFSGSIPSSLATLTLLTDMS 155
             +   + +  + + NN I   +  +  ++ +    +  NQ S    +++  LT L  ++
Sbjct: 215 TPVANMTRLNSLKIGNNKIT-DLSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLN 271

Query: 156 LNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDV 215
           + +N +S        +L+ L +L L++N L  E    +  L+ LTTL L  N ++  +  
Sbjct: 272 VGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD-IRP 328

Query: 216 LQDLP-LRDLNIENN 229
           L  L  +   +  N 
Sbjct: 329 LASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 86.4 bits (215), Expect = 2e-18
 Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 6/115 (5%)

Query: 97  ENLGAFSSIRVIDLSNNHIGGSIPSILPVT-MQNFFLSDNQFSGSIPSSLATLTLLTDMS 155
             L   S +  +++  N I   I ++  +T ++   +  NQ S    S L  L+ L  + 
Sbjct: 237 SPLANLSQLTWLEIGTNQIS-DINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLF 293

Query: 156 LNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLS 210
           LNNN L  E  +    LT L  L LS N+++  + P L +LS++ +    N  + 
Sbjct: 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD-IRP-LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 82.2 bits (204), Expect = 4e-17
 Identities = 27/142 (19%), Positives = 57/142 (40%), Gaps = 8/142 (5%)

Query: 97  ENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSL 156
                 +      L    +   +      ++    ++  + + SI   +  LT L  ++L
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNL 73

Query: 157 NNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVL 216
           N N ++   P    +L  L NL + +N ++     +L+NL+ L  L+L  + +S  +  L
Sbjct: 74  NGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISD-ISPL 128

Query: 217 QDLP-LRDLNIENNLFSGPIPE 237
            +L  +  LN+  N     +  
Sbjct: 129 ANLTKMYSLNLGANHNLSDLSP 150

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.7 bits (143), Expect = 2e-09
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 151 LTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLS 210
              ++     ++   PDA   L   I   L   +++     + E L  +T L +   +++
Sbjct: 2   AATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA 57

Query: 211 GTLDVLQDLP-LRDLNIENNLFSGPIP 236
            ++  ++ L  L  LN+  N  +   P
Sbjct: 58  -SIQGIEYLTNLEYLNLNGNQITDISP 83

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.9 bits (102), Expect = 3e-04
 Identities = 8/57 (14%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 174 GLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP-LRDLNIENN 229
           G   L      ++ ++ P   +L++     LQ   ++  +   ++L  +  L +   
Sbjct: 1   GAATLATLPAPIN-QIFP-DADLAEGIRAVLQKASVTDVVT-QEELESITKLVVAGE 54

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 95.5 bits (238), Expect = 9e-22
 Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 14/162 (8%)

Query: 514 ENLIGAGMLGSVYRAQLP-----DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
              +G G  G V   +        G+ +AVK L   +      D   + +  +  + H N
Sbjct: 26  IRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIAD-LKKEIEILRNLYHEN 84

Query: 569 IVELKGYCAEHGQR--LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEY 626
           IV+ KG C E G     LI E+  +G+L++ L  +   KN ++   +++ A+   + ++Y
Sbjct: 85  IVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKN---KNKINLKQQLKYAVQICKGMDY 141

Query: 627 LHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
           L        VHR+  + N+L++ +  V + D GL   I +  
Sbjct: 142 LGSRQ---YVHRDLAARNVLVESEHQVKIGDFGLTKAIETDK 180

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 97.9 bits (244), Expect = 1e-21
 Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 9/154 (5%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLL-AVKKLDKRASSQQKDDEFLELVNNIDRIRHA 567
              + ++ +G G  G VY        L  AVK L +     +   EFL+    +  I+H 
Sbjct: 220 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVE---EFLKEAAVMKEIKHP 276

Query: 568 NIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYL 627
           N+V+L G C       +I E+ + G L D L   +  +  +S    + MA   + A+EYL
Sbjct: 277 NLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECN--RQEVSAVVLLYMATQISSAMEYL 334

Query: 628 HEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
            +      +HRN  + N L+ ++  V V+D GL+
Sbjct: 335 EKKN---FIHRNLAARNCLVGENHLVKVADFGLS 365

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 95.1 bits (237), Expect = 1e-21
 Identities = 47/226 (20%), Positives = 77/226 (34%), Gaps = 46/226 (20%)

Query: 445 PPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTTARSFTIASL 504
                 PP P   P     P +                                    +L
Sbjct: 5   SQGMQGPPVPQFQPQKALRPDMGYN---------------------------------TL 31

Query: 505 QQYTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKK--LDKRASSQQKDDEFLELVNNI 561
             +      E  IG G    VYRA  L DG  +A+KK  +     ++ + D   E ++ +
Sbjct: 32  ANFR----IEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKE-IDLL 86

Query: 562 DRIRHANIVELKGYCAEHGQRLLIY-EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGA 620
            ++ H N+++           L I  E    G L  M+    + K  +   T  +  +  
Sbjct: 87  KQLNHPNVIKYYA-SFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQL 145

Query: 621 ARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS 666
             ALE++H      ++HR+ K AN+ +     V + D GL    SS
Sbjct: 146 CSALEHMHS---RRVMHRDIKPANVFITATGVVKLGDLGLGRFFSS 188

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 94.3 bits (235), Expect = 2e-21
 Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 7/147 (4%)

Query: 507 YTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI- 564
           YT  F +   IG+G  GSV++     DG + A+K+  K  +    +   L  V     + 
Sbjct: 9   YTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLG 68

Query: 565 RHANIVELKGYCAEHGQRLLIY-EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
           +H+++V            +LI  EYC+ G+L D +  +  + +         + L   R 
Sbjct: 69  QHSHVVRYFS-AWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRG 127

Query: 624 LEYLHEICQPPIVHRNFKSANILLDDD 650
           L Y+H      +VH + K +NI +   
Sbjct: 128 LRYIHS---MSLVHMDIKPSNIFISRT 151

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 97.5 bits (243), Expect = 3e-21
 Identities = 35/154 (22%), Positives = 57/154 (37%), Gaps = 7/154 (4%)

Query: 107 VIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIP 166
                  +    IP  LP + +N  LS N        S  +   L  + L+   +     
Sbjct: 11  TYQCMELNFY-KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 167 DAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLD-VLQDLP-LRDL 224
            A+QSL+ L  L L+ N +      +   LS L  L      L+   +  +  L  L++L
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 225 NIENN-LFSGPIPEKMLQIPNFRK---DGNPFNS 254
           N+ +N + S  +PE    + N        N   S
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 87.1 bits (216), Expect = 5e-18
 Identities = 34/153 (22%), Positives = 66/153 (43%), Gaps = 11/153 (7%)

Query: 100 GAFS---SIRVIDLSNNHIGGSIPSIL--PVTMQNFFLSDNQFSGSIPSSLATLTLLTDM 154
           GA+     +  + L+ N I            ++Q     +   +      +  L  L ++
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 155 SLNNNLL-SGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLT----TLHLQNNQL 209
           ++ +NL+ S ++P+ F +LT L +LDLSSN +       L  L Q+     +L L  N +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 210 SG-TLDVLQDLPLRDLNIENNLFSGPIPEKMLQ 241
           +       +++ L  L + NN  S  + +  +Q
Sbjct: 190 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 222

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 87.1 bits (216), Expect = 5e-18
 Identities = 28/146 (19%), Positives = 53/146 (36%), Gaps = 8/146 (5%)

Query: 94  ELGENLGAFSSIRVIDLSNNHIGGSIPSIL---PVTMQNFFLSDNQFSGSIPSSLATLTL 150
            +  N      +  +D  ++++       +      +    +S      +       L+ 
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 151 LTDMSLNNNLLSGEI-PDAFQSLTGLINLDLSSNNLSGELPPS-LENLSQLTTLHLQNNQ 208
           L  + +  N       PD F  L  L  LDLS   L  +L P+   +LS L  L++ +NQ
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQ 505

Query: 209 LSG-TLDVLQDLP-LRDLNIENNLFS 232
           L      +   L  L+ + +  N + 
Sbjct: 506 LKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 80.9 bits (200), Expect = 4e-16
 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 8/122 (6%)

Query: 98  NLGAF---SSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPS-SLATLTLL 151
               F    ++  +D+S+ H   +   I     +++   ++ N F  +        L  L
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472

Query: 152 TDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPS-LENLSQLTTLHLQNNQLS 210
           T + L+   L    P AF SL+ L  L+++SN L   +P    + L+ L  + L  N   
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 531

Query: 211 GT 212
            +
Sbjct: 532 CS 533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 77.4 bits (191), Expect = 5e-15
 Identities = 30/145 (20%), Positives = 54/145 (37%), Gaps = 7/145 (4%)

Query: 97  ENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIP-SSLATLTLLTDMS 155
           ++       + ++L N   G   P++   +++    + N+   +     L +L  L D+S
Sbjct: 298 KDFSYNFGWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL-DLS 355

Query: 156 LNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLD- 214
            N     G    +    T L  LDLS N +   +  +   L QL  L  Q++ L    + 
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEF 414

Query: 215 -VLQDLP-LRDLNIENNLFSGPIPE 237
            V   L  L  L+I +         
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNG 439

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 69.7 bits (171), Expect = 1e-12
 Identities = 26/137 (18%), Positives = 54/137 (39%), Gaps = 8/137 (5%)

Query: 103 SSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQF-SGSIPSSLATLTLLTDMSLNNN 159
           SS++ +     ++       +    T++   ++ N   S  +P   + LT L  + L++N
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 160 LLSGEIPDAFQSLTGL----INLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDV 215
            +        + L  +    ++LDLS N ++  + P      +L  L L+NN  S  +  
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMK 218

Query: 216 LQDLPLRDLNIENNLFS 232
                L  L +   +  
Sbjct: 219 TCIQGLAGLEVHRLVLG 235

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 33/180 (18%), Positives = 54/180 (30%), Gaps = 22/180 (12%)

Query: 95  LGENLGAFSSIRVIDLSNNHIGGSIPSI------LPVTMQNFFLSDNQFSGSIPSSLATL 148
           L E     +++  +DLS+N I     +       +P+   +  LS N  +  I       
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKE 199

Query: 149 TLLTDMSLNNNLLSGEIPD-AFQSLTGLINLDL------SSNNLSGELPPSLENLSQLTT 201
             L  ++L NN  S  +     Q L GL    L      +  NL      +LE L  LT 
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 202 LHLQNNQL-------SGTLDVLQDLPLRDLNIENNLFSGPIPEKMLQIPNFRKDGNPFNS 254
              +   L           + L ++    L     +             +       F  
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV-SVTIERVKDFSYNFGWQHLELVNCKFGQ 318

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 28/192 (14%), Positives = 45/192 (23%), Gaps = 59/192 (30%)

Query: 100 GAFS--SIRVIDLSNNHIGGSIPSILPVTMQN---------FFLSDNQFSGSIPSSLATL 148
           GAF    +  + L NN    ++       +            F ++        S+L  L
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 149 TLLTDMSLN---NNLLSGEIPDAFQ-------------------------SLTGLINLDL 180
             LT         +    +I D F                              L  ++ 
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 314

Query: 181 SSNNLSGELPPSLE----------------NLSQLTTLHLQNNQLSG---TLDVLQDLP- 220
                      SL+                +L  L  L L  N LS              
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 221 LRDLNIENNLFS 232
           L+ L++  N   
Sbjct: 375 LKYLDLSFNGVI 386

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 93.8 bits (234), Expect = 4e-21
 Identities = 39/165 (23%), Positives = 78/165 (47%), Gaps = 13/165 (7%)

Query: 509 NSFSQENLIGAGMLGSVYRAQL-PDGKLL----AVKKLDKRASSQQKDDEFLELVNNIDR 563
             F +  ++G+G  G+VY+    P+G+ +    A+K+L + A+S + + E L+    +  
Sbjct: 15  TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKEL-REATSPKANKEILDEAYVMAS 73

Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
           + + ++  L G C       LI +    G L D +      K+N+     +   +  A+ 
Sbjct: 74  VDNPHVCRLLGICLTS-TVQLITQLMPFGCLLDYVREH---KDNIGSQYLLNWCVQIAKG 129

Query: 624 LEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
           + YL +     +VHR+  + N+L+     V ++D GLA L+ +  
Sbjct: 130 MNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEE 171

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 93.5 bits (233), Expect = 4e-21
 Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 12/153 (7%)

Query: 514 ENLIGAGMLGSVYRAQL--PDGKLL--AVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
             +IG G  G VY   L   DGK +  AVK L++     +    FL     +    H N+
Sbjct: 30  NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQ-FLTEGIIMKDFSHPNV 88

Query: 570 VELKGYCAE-HGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           + L G C    G  L++  Y  +G L++ + ++    +N +    I   L  A+ ++YL 
Sbjct: 89  LSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNET---HNPTVKDLIGFGLQVAKGMKYLA 145

Query: 629 EICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
                  VHR+  + N +LD+   V V+D GLA
Sbjct: 146 SKK---FVHRDLAARNCMLDEKFTVKVADFGLA 175

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 93.1 bits (232), Expect = 4e-21
 Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 9/154 (5%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLL-AVKKLDKRASSQQKDDEFLELVNNIDRIRHA 567
              + ++ +G G  G VY        L  AVK L +     +   EFL+    +  I+H 
Sbjct: 13  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVE---EFLKEAAVMKEIKHP 69

Query: 568 NIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYL 627
           N+V+L G C       +I E+ + G L D L   +  +  +S    + MA   + A+EYL
Sbjct: 70  NLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECN--RQEVSAVVLLYMATQISSAMEYL 127

Query: 628 HEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
            +      +HR+  + N L+ ++  V V+D GL+
Sbjct: 128 EKKN---FIHRDLAARNCLVGENHLVKVADFGLS 158

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 93.1 bits (232), Expect = 5e-21
 Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 15/158 (9%)

Query: 514 ENLIGAGMLGSVYRAQLP-----DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
              +G G  GSV   +        G+++AVKKL  + S+++   +F   +  +  ++H N
Sbjct: 15  LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKL--QHSTEEHLRDFEREIEILKSLQHDN 72

Query: 569 IVELKGYCAEHGQR--LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEY 626
           IV+ KG C   G+R   LI EY   G+L+D L      K  +     ++      + +EY
Sbjct: 73  IVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH---KERIDHIKLLQYTSQICKGMEY 129

Query: 627 LHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI 664
           L        +HR+  + NIL++++  V + D GL  ++
Sbjct: 130 LGTKR---YIHRDLATRNILVENENRVKIGDFGLTKVL 164

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 93.2 bits (232), Expect = 7e-21
 Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 15/158 (9%)

Query: 514 ENLIGAGMLGSVYRAQLP-----DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
              +G G  GSV   +        G+++AVKKL  + S+++   +F   +  +  ++H N
Sbjct: 46  LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKL--QHSTEEHLRDFEREIEILKSLQHDN 103

Query: 569 IVELKGYCAEHGQR--LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEY 626
           IV+ KG C   G+R   LI EY   G+L+D L      K  +     ++      + +EY
Sbjct: 104 IVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH---KERIDHIKLLQYTSQICKGMEY 160

Query: 627 LHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI 664
           L        +HR+  + NIL++++  V + D GL  ++
Sbjct: 161 LGTKR---YIHRDLATRNILVENENRVKIGDFGLTKVL 195

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 91.9 bits (229), Expect = 7e-21
 Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 9/156 (5%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
           +  +    IG+G  G V+     +   +A+K + + A S++   +F+E    + ++ H  
Sbjct: 8   SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEE---DFIEEAEVMMKLSHPK 64

Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           +V+L G C E     L+ E+  +G L D L +        +  T + M L     + YL 
Sbjct: 65  LVQLYGVCLEQAPICLVTEFMEHGCLSDYLRTQR---GLFAAETLLGMCLDVCEGMAYLE 121

Query: 629 EICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI 664
           E C   ++HR+  + N L+ ++  + VSD G+   +
Sbjct: 122 EAC---VIHRDLAARNCLVGENQVIKVSDFGMTRFV 154

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 93.2 bits (232), Expect = 8e-21
 Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 15/162 (9%)

Query: 514 ENLIGAGMLGSVYRAQLP-----DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
            + +G G  GSV   +        G L+AVK+L  + S   +  +F   +  +  +    
Sbjct: 28  ISQLGKGNFGSVELCRYDPLGDNTGALVAVKQL--QHSGPDQQRDFQREIQILKALHSDF 85

Query: 569 IVELKGYCAEHGQR--LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEY 626
           IV+ +G     G++   L+ EY  +G L+D L      +  L  +  +  +    + +EY
Sbjct: 86  IVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRH---RARLDASRLLLYSSQICKGMEY 142

Query: 627 LHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
           L        VHR+  + NIL++ +  V ++D GLA L+    
Sbjct: 143 LGSRR---CVHRDLAARNILVESEAHVKIADFGLAKLLPLDK 181

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 91.9 bits (229), Expect = 1e-20
 Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 9/156 (5%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
            +      +GAG  G V+         +AVK L + + S      FL   N + +++H  
Sbjct: 13  ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPD---AFLAEANLMKQLQHQR 69

Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           +V L     +     +I EY  NG+L D L +       L+ N  + MA   A  + ++ 
Sbjct: 70  LVRLYAVVTQEP-IYIITEYMENGSLVDFLKTPS--GIKLTINKLLDMAAQIAEGMAFIE 126

Query: 629 EICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI 664
           E      +HR+ ++ANIL+ D L+  ++D GLA LI
Sbjct: 127 ERN---YIHRDLRAANILVSDTLSCKIADFGLARLI 159

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 92.4 bits (230), Expect = 1e-20
 Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 16/167 (9%)

Query: 509 NSFSQENLIGAGMLGSVYRAQL-----PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDR 563
               +   +G G  G V            G+++AVK L   A  Q +   + + ++ +  
Sbjct: 31  RYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSG-WKQEIDILRT 89

Query: 564 IRHANIVELKGYCAEHGQR--LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAA 621
           + H +I++ KG C + G     L+ EY   G+L+D L      ++++     +  A    
Sbjct: 90  LYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLP-----RHSIGLAQLLLFAQQIC 144

Query: 622 RALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
             + YLH       +HR+  + N+LLD+D  V + D GLA  +  G 
Sbjct: 145 EGMAYLHAQH---YIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGH 188

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 91.1 bits (227), Expect = 1e-20
 Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 9/156 (5%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
              +    +G+G  G V   +      +AVK + + + S+    EF +    + ++ H  
Sbjct: 8   EEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSED---EFFQEAQTMMKLSHPK 64

Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           +V+  G C++     ++ EY SNG L + L S  +    L  +  + M       + +L 
Sbjct: 65  LVKFYGVCSKEYPIYIVTEYISNGCLLNYLRSHGK---GLEPSQLLEMCYDVCEGMAFLE 121

Query: 629 EICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI 664
                  +HR+  + N L+D DL V VSD G+   +
Sbjct: 122 SHQ---FIHRDLAARNCLVDRDLCVKVSDFGMTRYV 154

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 94.1 bits (234), Expect = 1e-20
 Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 9/153 (5%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
            S   E  +G G  G V+         +A+K L     S +    FL+    + ++RH  
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLRHEK 240

Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           +V+L    +E     ++ EY S G+L D L  +      L     + MA   A  + Y+ 
Sbjct: 241 LVQLYAVVSEE-PIYIVTEYMSKGSLLDFLKGET--GKYLRLPQLVDMAAQIASGMAYVE 297

Query: 629 EICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
            +     VHR+ ++ANIL+ ++L   V+D GLA
Sbjct: 298 RMN---YVHRDLRAANILVGENLVCKVADFGLA 327

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 92.4 bits (230), Expect = 1e-20
 Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 20/193 (10%)

Query: 485 TSTKTAKPFTTARSFTIASLQQYTNSFSQE---------NLIGAGMLGSVYRAQL--PDG 533
              K  +P   A   T     +   SF++E          +IG+G  G V   +L  P  
Sbjct: 16  FQGKLPEPQFYAEPHTYEEPGRAGRSFTREIEASRIHIEKIIGSGDSGEVCYGRLRVPGQ 75

Query: 534 KLL--AVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSN 591
           + +  A+K L    + +Q+ D FL   + + +  H NI+ L+G        +++ EY  N
Sbjct: 76  RDVPVAIKALKAGYTERQRRD-FLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMEN 134

Query: 592 GTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDL 651
           G+L   L + D      +    + M  G    + YL ++     VHR+  + N+L+D +L
Sbjct: 135 GSLDTFLRTHD---GQFTIMQLVGMLRGVGAGMRYLSDLG---YVHRDLAARNVLVDSNL 188

Query: 652 AVSVSDCGLAPLI 664
              VSD GL+ ++
Sbjct: 189 VCKVSDFGLSRVL 201

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 94.3 bits (235), Expect = 2e-20
 Identities = 39/164 (23%), Positives = 66/164 (40%), Gaps = 8/164 (4%)

Query: 97  ENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSL 156
             L   + +  + L  N I    P      + N  L++NQ     P  ++ L  LT ++L
Sbjct: 259 APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTL 316

Query: 157 NNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVL 216
             N +S   P    SLT L  L   +N +S     SL NL+ +  L   +NQ+S  L  L
Sbjct: 317 YFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISD-LTPL 371

Query: 217 QDLP-LRDLNIENNLFSGPIPEKMLQIPNFRKDGNPFNSTVAPS 259
            +L  +  L + +  ++         +       N   + +AP+
Sbjct: 372 ANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPA 415

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 92.3 bits (230), Expect = 6e-20
 Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 9/141 (6%)

Query: 97  ENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSL 156
             L   +++  + L NN I    P      +    LS N  S    S+L+ LT L  +S 
Sbjct: 106 TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF 163

Query: 157 NNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVL 216
            N +          +LT L  LD+SSN +S      L  L+ L +L   NNQ+S  +  L
Sbjct: 164 GNQVTD---LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD-ITPL 217

Query: 217 QDLP-LRDLNIENNLFSGPIP 236
             L  L +L++  N       
Sbjct: 218 GILTNLDELSLNGNQLKDIGT 238

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 91.2 bits (227), Expect = 1e-19
 Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 8/141 (5%)

Query: 97  ENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSL 156
             L   +++  +  +NN I    P  +   +    L+ NQ       +LA+LT LTD+ L
Sbjct: 193 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDL 250

Query: 157 NNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVL 216
            NN +S   P     LT L  L L +N +S      L  L+ LT L L  NQL   +  +
Sbjct: 251 ANNQISNLAP--LSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED-ISPI 305

Query: 217 QDLP-LRDLNIENNLFSGPIP 236
            +L  L  L +  N  S   P
Sbjct: 306 SNLKNLTYLTLYFNNISDISP 326

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 87.7 bits (218), Expect = 2e-18
 Identities = 42/145 (28%), Positives = 62/145 (42%), Gaps = 17/145 (11%)

Query: 97  ENLGAFSSIRVIDLSNNHIGGSIPSILPVT----MQNFFLSDNQFSGSIPSSLATLTLLT 152
             L   +S++ +   N      +  + P+     ++   +S N+ S    S LA LT L 
Sbjct: 150 SALSGLTSLQQLSFGNQ-----VTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLE 202

Query: 153 DMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGT 212
            +   NN +S   P     LT L  L L+ N L      +L +L+ LT L L NNQ+S  
Sbjct: 203 SLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN- 257

Query: 213 LDVLQDLP-LRDLNIENNLFSGPIP 236
           L  L  L  L +L +  N  S   P
Sbjct: 258 LAPLSGLTKLTELKLGANQISNISP 282

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 86.6 bits (215), Expect = 4e-18
 Identities = 30/141 (21%), Positives = 59/141 (41%), Gaps = 8/141 (5%)

Query: 97  ENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSL 156
               A +      L   ++  ++       +                 +  L  LT ++ 
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINF 75

Query: 157 NNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVL 216
           +NN L+   P   ++LT L+++ +++N ++      L NL+ LT L L NNQ++  +D L
Sbjct: 76  SNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITD-IDPL 130

Query: 217 QDLP-LRDLNIENNLFSGPIP 236
           ++L  L  L + +N  S    
Sbjct: 131 KNLTNLNRLELSSNTISDISA 151

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 78.5 bits (194), Expect = 2e-15
 Identities = 34/162 (20%), Positives = 59/162 (36%), Gaps = 6/162 (3%)

Query: 97  ENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSL 156
             +    ++  + L  N+I    P      +Q  F  +N+ S    SSLA LT +  +S 
Sbjct: 303 SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSA 360

Query: 157 NNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVL 216
            +N +S   P    +LT +  L L+    +        N+S   T+      L     + 
Sbjct: 361 GHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATIS 418

Query: 217 QDLPLRDLNIENNL--FSGPIPEKMLQIPNFRKDGNPFNSTV 256
                 + +I  NL  ++  +     Q     K    F+ TV
Sbjct: 419 DGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTV 460

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 69.6 bits (171), Expect = 1e-12
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 8/106 (7%)

Query: 132 LSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPP 191
             D   +         L       L    ++  +      L  +  L      +      
Sbjct: 9   TQDTPINQIFT--DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--ID 62

Query: 192 SLENLSQLTTLHLQNNQLSGTLDVLQDLP-LRDLNIENNLFSGPIP 236
            +E L+ LT ++  NNQL+  +  L++L  L D+ + NN  +   P
Sbjct: 63  GVEYLNNLTQINFSNNQLTD-ITPLKNLTKLVDILMNNNQIADITP 107

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 92.0 bits (229), Expect = 2e-20
 Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 14/159 (8%)

Query: 514 ENLIGAGMLGSVYRAQL--PDGKLL--AVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
             ++G G  GSV    L   DG  L  AVK +    SSQ++ +EFL     +    H N+
Sbjct: 39  GKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNV 98

Query: 570 VELKGYCAEHGQR-----LLIYEYCSNGTLQDML--HSDDELKNNLSWNTRIRMALGAAR 622
           + L G C E   +     ++I  +   G L   L     +    ++   T ++  +  A 
Sbjct: 99  IRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIAL 158

Query: 623 ALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
            +EYL        +HR+  + N +L DD+ V V+D GL+
Sbjct: 159 GMEYLSNRN---FLHRDLAARNCMLRDDMTVCVADFGLS 194

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 94.0 bits (234), Expect = 2e-20
 Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 11/154 (7%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
                   IG G  G V       G  +AVK + K  ++ Q    FL   + + ++RH+N
Sbjct: 193 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCI-KNDATAQ---AFLAEASVMTQLRHSN 247

Query: 569 IVELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYL 627
           +V+L G   E    L ++ EY + G+L D L S    ++ L  +  ++ +L    A+EYL
Sbjct: 248 LVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRG--RSVLGGDCLLKFSLDVCEAMEYL 305

Query: 628 HEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
                   VHR+  + N+L+ +D    VSD GL 
Sbjct: 306 EGNN---FVHRDLAARNVLVSEDNVAKVSDFGLT 336

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 91.7 bits (228), Expect = 2e-20
 Identities = 39/156 (25%), Positives = 61/156 (39%), Gaps = 10/156 (6%)

Query: 511 FSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
           +     +G G    V   + L DG   A+K++      QQ  +E     +      H NI
Sbjct: 31  YLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILC--HEQQDREEAQREADMHRLFNHPNI 88

Query: 570 VELKGYCAEHGQR----LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALE 625
           + L  YC           L+  +   GTL + +    +  N L+ +  + + LG  R LE
Sbjct: 89  LRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLE 148

Query: 626 YLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
            +H        HR+ K  NILL D+    + D G  
Sbjct: 149 AIH---AKGYAHRDLKPTNILLGDEGQPVLMDLGSM 181

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 93.6 bits (233), Expect = 2e-20
 Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 9/156 (5%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
            S   E  +GAG  G V+ A       +AVK +   + S +    FL   N +  ++H  
Sbjct: 188 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVE---AFLAEANVMKTLQHDK 244

Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           +V+L     +     +I E+ + G+L D L SD+   +       I  +   A  + ++ 
Sbjct: 245 LVKLHAVVTKEPI-YIITEFMAKGSLLDFLKSDE--GSKQPLPKLIDFSAQIAEGMAFIE 301

Query: 629 EICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI 664
           +      +HR+ ++ANIL+   L   ++D GLA +I
Sbjct: 302 QRN---YIHRDLRAANILVSASLVCKIADFGLARVI 334

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 91.2 bits (227), Expect = 2e-20
 Identities = 37/159 (23%), Positives = 66/159 (41%), Gaps = 11/159 (6%)

Query: 513 QENLIGAGMLGSVYRAQLPDGKLL---AVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
           ++  +G+G  G+V +      K++   AVK L   A+     DE L   N + ++ +  I
Sbjct: 21  EDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYI 80

Query: 570 VELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
           V + G C      +L+ E    G L   L  +      +     I +    +  ++YL E
Sbjct: 81  VRMIGICEAE-SWMLVMEMAELGPLNKYLQQNRH----VKDKNIIELVHQVSMGMKYLEE 135

Query: 630 ICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
                 VHR+  + N+LL       +SD GL+  + +  
Sbjct: 136 SN---FVHRDLAARNVLLVTQHYAKISDFGLSKALRADE 171

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 91.1 bits (227), Expect = 2e-20
 Identities = 38/156 (24%), Positives = 65/156 (41%), Gaps = 9/156 (5%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
              +    +G G  G V   +      +A+K + + + S+    EF+E    +  + H  
Sbjct: 24  KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSED---EFIEEAKVMMNLSHEK 80

Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           +V+L G C +     +I EY +NG L + L               + M      A+EYL 
Sbjct: 81  LVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRH---RFQTQQLLEMCKDVCEAMEYLE 137

Query: 629 EICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI 664
                  +HR+  + N L++D   V VSD GL+  +
Sbjct: 138 SKQ---FLHRDLAARNCLVNDQGVVKVSDFGLSRYV 170

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 90.8 bits (226), Expect = 4e-20
 Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 13/165 (7%)

Query: 509 NSFSQENLIGAGMLGSVYRAQL-PDGKLL----AVKKLDKRASSQQKDDEFLELVNNIDR 563
               +  ++G+G+ G+V++    P+G+ +     +K + +  S +Q      + +  I  
Sbjct: 13  TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVI-EDKSGRQSFQAVTDHMLAIGS 71

Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
           + HA+IV L G C       L+ +Y   G+L D +      +  L     +   +  A+ 
Sbjct: 72  LDHAHIVRLLGLCPGS-SLQLVTQYLPLGSLLDHVRQH---RGALGPQLLLNWGVQIAKG 127

Query: 624 LEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
           + YL E     +VHRN  + N+LL     V V+D G+A L+    
Sbjct: 128 MYYLEEHG---MVHRNLAARNVLLKSPSQVQVADFGVADLLPPDD 169

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 90.9 bits (226), Expect = 4e-20
 Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 15/157 (9%)

Query: 517 IGAGMLGSVYRAQL--PDGKLL--AVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVEL 572
           +G G  GSV  AQL   DG  +  AVK L     +    +EFL     +    H ++ +L
Sbjct: 31  LGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKL 90

Query: 573 KGYCAEHGQR------LLIYEYCSNGTLQDML--HSDDELKNNLSWNTRIRMALGAARAL 624
            G       +      ++I  +  +G L   L      E   NL   T +R  +  A  +
Sbjct: 91  VGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGM 150

Query: 625 EYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           EYL        +HR+  + N +L +D+ V V+D GL+
Sbjct: 151 EYLSSRN---FIHRDLAARNCMLAEDMTVCVADFGLS 184

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 89.6 bits (223), Expect = 5e-20
 Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 11/154 (7%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
                   IG G  G V       G  +AVK +   A++Q     FL   + + ++RH+N
Sbjct: 21  KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDATAQ----AFLAEASVMTQLRHSN 75

Query: 569 IVELKGYCAEHGQRLLI-YEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYL 627
           +V+L G   E    L I  EY + G+L D L S    ++ L  +  ++ +L    A+EYL
Sbjct: 76  LVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRG--RSVLGGDCLLKFSLDVCEAMEYL 133

Query: 628 HEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
                   VHR+  + N+L+ +D    VSD GL 
Sbjct: 134 EGNN---FVHRDLAARNVLVSEDNVAKVSDFGLT 164

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 91.3 bits (227), Expect = 5e-20
 Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 11/164 (6%)

Query: 509 NSFSQENLIGAGMLGSVYRAQL--PDGKLL--AVKKLDKRASSQQKDDEFLELVNNIDRI 564
            + S + ++GAG  G V   +L  P  K +  A+K L    + +Q+ D FL   + + + 
Sbjct: 45  TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRD-FLGEASIMGQF 103

Query: 565 RHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARAL 624
            H NI+ L+G   +    +++ EY  NG+L   L   D      +    + M  G A  +
Sbjct: 104 DHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHD---AQFTVIQLVGMLRGIASGM 160

Query: 625 EYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
           +YL ++     VHR+  + NIL++ +L   VSD GL  ++    
Sbjct: 161 KYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLGRVLEDDP 201

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 87.8 bits (218), Expect = 7e-20
 Identities = 44/143 (30%), Positives = 61/143 (42%), Gaps = 9/143 (6%)

Query: 118 SIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLIN 177
            IP+ LP T+    L  N      P + +    L  + L+NN +S   PDAFQ L  L +
Sbjct: 25  EIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS 84

Query: 178 LDLSSNNLSGELPPSL-ENLSQLTTLHLQNNQLS----GTLDVLQDLPLRDLNIENNLFS 232
           L L  N ++ ELP SL E L  L  L L  N+++         L +L L  L  +N L +
Sbjct: 85  LVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY-DNKLQT 142

Query: 233 GP--IPEKMLQIPNFRKDGNPFN 253
                   +  I       NPF 
Sbjct: 143 IAKGTFSPLRAIQTMHLAQNPFI 165

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 89.6 bits (223), Expect = 7e-20
 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 12/160 (7%)

Query: 509 NSFSQENLIGAGMLGSVYRAQL--PDGKLL--AVKKLDKRASSQQKDDEFLELVNNIDRI 564
                   IG G  G V++     P+   L  A+K      S   ++  FL+    + + 
Sbjct: 15  ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREK-FLQEALTMRQF 73

Query: 565 RHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARAL 624
            H +IV+L G   E+    +I E C+ G L+  L        +L   + I  A   + AL
Sbjct: 74  DHPHIVKLIGVITEN-PVWIIMELCTLGELRSFLQVRK---YSLDLASLILYAYQLSTAL 129

Query: 625 EYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI 664
            YL        VHR+  + N+L+  +  V + D GL+  +
Sbjct: 130 AYLESKR---FVHRDIAARNVLVSSNDCVKLGDFGLSRYM 166

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 90.5 bits (225), Expect = 7e-20
 Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 12/161 (7%)

Query: 509 NSFSQENLIGAGMLGSVYRAQL--PDGKLL---AVKKLDKRASSQQKDDEFLELVNNIDR 563
           +  +++ +IGAG  G VY+  L    GK     A+K L    + +Q+ D FL     + +
Sbjct: 44  SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVD-FLGEAGIMGQ 102

Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
             H NI+ L+G  +++   ++I EY  NG L   L   D      S    + M  G A  
Sbjct: 103 FSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKD---GEFSVLQLVGMLRGIAAG 159

Query: 624 LEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI 664
           ++YL  +     VHR+  + NIL++ +L   VSD GL+ ++
Sbjct: 160 MKYLANMN---YVHRDLAARNILVNSNLVCKVSDFGLSRVL 197

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 90.5 bits (225), Expect = 8e-20
 Identities = 34/169 (20%), Positives = 63/169 (37%), Gaps = 24/169 (14%)

Query: 100 GAFS--SIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPS-SLATLTLLTDMSL 156
           GAF    +  + +S   +   IP  LP T+    L  N+   +I    L   + L  + L
Sbjct: 167 GAFDGLKLNYLRISEAKLT-GIPKDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGL 224

Query: 157 NNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLS------ 210
            +N +      +   L  L  L L +N LS  +P  L +L  L  ++L  N ++      
Sbjct: 225 GHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVND 283

Query: 211 --GTLDVLQDLPLRDLNIENN-LFSGPIPEKM---------LQIPNFRK 247
                  ++      +++ NN +    +             +Q  N++K
Sbjct: 284 FCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK 332

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 84.7 bits (210), Expect = 7e-18
 Identities = 35/162 (21%), Positives = 55/162 (33%), Gaps = 26/162 (16%)

Query: 104 SIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSG 163
            +RV+  S+  +  ++P  +        L +N  S         L  L  + L NN +S 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92

Query: 164 EIPDAFQSLTGLINLDLSSNNLS---GELPPSLE------------------NLSQLTTL 202
               AF  L  L  L +S N+L      LP SL                    L  +  +
Sbjct: 93  IHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCI 152

Query: 203 HLQNNQLSGTL---DVLQDLPLRDLNIENNLFSGPIPEKMLQ 241
            +  N L  +         L L  L I     +G IP+ + +
Sbjct: 153 EMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLPE 193

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 33/139 (23%), Positives = 56/139 (40%), Gaps = 14/139 (10%)

Query: 100 GAFS---SIRVIDLSNNHIG-GSIPSIL--PVTMQNFFLSDNQFSGSIPSSLATLTLLTD 153
           G FS   ++  I++  N +            + +    +S+ + +  IP  L     L +
Sbjct: 141 GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNE 197

Query: 154 MSLNNNLLSGEIPD-AFQSLTGLINLDLSSNNLSGELPP-SLENLSQLTTLHLQNNQLSG 211
           + L++N +   I        + L  L L  N +   +   SL  L  L  LHL NN+LS 
Sbjct: 198 LHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLSR 255

Query: 212 TLDVLQDLP-LRDLNIENN 229
               L DL  L+ + +  N
Sbjct: 256 VPAGLPDLKLLQVVYLHTN 274

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 90.0 bits (224), Expect = 8e-20
 Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 24/166 (14%)

Query: 514 ENLIGAGMLGSVYRAQLPDGKLL---AVKKLDKRASSQQKDDEFL---ELVNNIDRIRHA 567
           +++IG G  G V +A++    L    A+K++ + AS     D F    E++  +    H 
Sbjct: 30  QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRD-FAGELEVLCKLGH--HP 86

Query: 568 NIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHS------------DDELKNNLSWNTRIR 615
           NI+ L G C   G   L  EY  +G L D L               +   + LS    + 
Sbjct: 87  NIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLH 146

Query: 616 MALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
            A   AR ++YL +      +HR+  + NIL+ ++    ++D GL+
Sbjct: 147 FAADVARGMDYLSQKQ---FIHRDLAARNILVGENYVAKIADFGLS 189

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 90.1 bits (224), Expect = 8e-20
 Identities = 39/165 (23%), Positives = 78/165 (47%), Gaps = 13/165 (7%)

Query: 509 NSFSQENLIGAGMLGSVYRAQL-PDGKLL----AVKKLDKRASSQQKDDEFLELVNNIDR 563
             F +  ++G+G  G+VY+    P+G+ +    A+K+L + A+S + + E L+    +  
Sbjct: 15  TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKEL-REATSPKANKEILDEAYVMAS 73

Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
           + + ++  L G C       LI +    G L D +      K+N+     +   +  A+ 
Sbjct: 74  VDNPHVCRLLGICLTS-TVQLITQLMPFGCLLDYVREH---KDNIGSQYLLNWCVQIAKG 129

Query: 624 LEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
           + YL +     +VHR+  + N+L+     V ++D GLA L+ +  
Sbjct: 130 MNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEE 171

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 90.0 bits (224), Expect = 9e-20
 Identities = 35/157 (22%), Positives = 69/157 (43%), Gaps = 16/157 (10%)

Query: 517 IGAGMLGSVYRAQLPDGK------LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           +G G  G VY               +A+K +++ AS +++ + FL   + +      ++V
Sbjct: 33  LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIE-FLNEASVMKEFNCHHVV 91

Query: 571 ELKGYCAEHGQRLLIYEYCSNGTLQDML------HSDDELKNNLSWNTRIRMALGAARAL 624
            L G  ++    L+I E  + G L+  L       +++ +    S +  I+MA   A  +
Sbjct: 92  RLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGM 151

Query: 625 EYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
            YL+       VHR+  + N ++ +D  V + D G+ 
Sbjct: 152 AYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMT 185

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 88.9 bits (221), Expect = 1e-19
 Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 12/156 (7%)

Query: 514 ENLIGAGMLGSVYRAQLPDGK----LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
           + +IG G  G VY  +  D        A+K L +    QQ +  FL     +  + H N+
Sbjct: 26  DRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEA-FLREGLLMRGLNHPNV 84

Query: 570 VELKGYC-AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           + L G      G   ++  Y  +G L   + S    + N +    I   L  AR +EYL 
Sbjct: 85  LALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSP---QRNPTVKDLISFGLQVARGMEYLA 141

Query: 629 EICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI 664
           E      VHR+  + N +LD+   V V+D GLA  I
Sbjct: 142 EQK---FVHRDLAARNCMLDESFTVKVADFGLARDI 174

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 88.8 bits (221), Expect = 1e-19
 Identities = 35/158 (22%), Positives = 65/158 (41%), Gaps = 11/158 (6%)

Query: 514 ENLIGAGMLGSVYRAQL-PDGKLL--AVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           +  +G G  GSV +       K +  A+K L K+ + +   +E +     + ++ +  IV
Sbjct: 15  DIELGCGNFGSVRQGVYRMRKKQIDVAIKVL-KQGTEKADTEEMMREAQIMHQLDNPYIV 73

Query: 571 ELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
            L G C      +L+ E    G L   L    E    +  +    +    +  ++YL E 
Sbjct: 74  RLIGVCQAE-ALMLVMEMAGGGPLHKFLVGKRE---EIPVSNVAELLHQVSMGMKYLEEK 129

Query: 631 CQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
                VHR+  + N+LL +     +SD GL+  + +  
Sbjct: 130 N---FVHRDLAARNVLLVNRHYAKISDFGLSKALGADD 164

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 91.5 bits (227), Expect = 2e-19
 Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 9/153 (5%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
            S   E  +G G  G V+         +A+K L     S +    FL+    + ++RH  
Sbjct: 267 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLRHEK 323

Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           +V+L    +E     ++ EY S G+L D L  +      L     + MA   A  + Y+ 
Sbjct: 324 LVQLYAVVSEE-PIYIVTEYMSKGSLLDFLKGET--GKYLRLPQLVDMAAQIASGMAYVE 380

Query: 629 EICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
            +     VHR+ ++ANIL+ ++L   V+D GLA
Sbjct: 381 RMN---YVHRDLRAANILVGENLVCKVADFGLA 410

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 88.1 bits (219), Expect = 2e-19
 Identities = 42/165 (25%), Positives = 65/165 (39%), Gaps = 12/165 (7%)

Query: 509 NSFSQENLIGAGMLGSVYRAQL--PDGKLL--AVKKLDKRASSQQKD-DEFLELVNNIDR 563
                   +G G  G V R +   P GK +  AVK L     SQ +  D+F+  VN +  
Sbjct: 18  KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHS 77

Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
           + H N++ L G         ++ E    G+L D L      + +    T  R A+  A  
Sbjct: 78  LDHRNLIRLYGVVLTP-PMKMVTELAPLGSLLDRLRKH---QGHFLLGTLSRYAVQVAEG 133

Query: 624 LEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
           + YL        +HR+  + N+LL     V + D GL   +    
Sbjct: 134 MGYLESKR---FIHRDLAARNLLLATRDLVKIGDFGLMRALPQND 175

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 88.2 bits (219), Expect = 2e-19
 Identities = 37/176 (21%), Positives = 71/176 (40%), Gaps = 24/176 (13%)

Query: 507 YTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR 565
           Y   F     +G G  G V+ A+   D    A+K++        ++    E V  + ++ 
Sbjct: 3   YLTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMRE-VKALAKLE 61

Query: 566 HANIVELKGYCAE---------HGQRLLIY---EYCSNGTLQDMLH---SDDELKNNLSW 610
           H  IV       E            ++ +Y   + C    L+D ++   + +E + ++  
Sbjct: 62  HPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCL 121

Query: 611 NTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS 666
           +  +++A     A+E+LH      ++HR+ K +NI    D  V V D GL   +  
Sbjct: 122 HIFLQIAE----AVEFLHSKG---LMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQ 170

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 91.2 bits (226), Expect = 2e-19
 Identities = 43/266 (16%), Positives = 83/266 (31%), Gaps = 15/266 (5%)

Query: 409 IPHAQNEQERNKQRMSTIPRRDDHEIDMSSLDMMMMPPPPPPPPPPPPPPPPPPPPPVVE 468
           +       +     +    +        S+      P  P  P     P           
Sbjct: 232 LWQLVEYLKLKADGLIYCLKEACPNSSASNASGAAAPTLPAHPSTLTHPQRRIDTLNSDG 291

Query: 469 KVIVKPIVPAEGTAVKTSTKTAKPFTTARSFTIASLQQY----TNSFSQENLIGAGMLGS 524
                  + +          T+   +          ++      N    +  +G G  GS
Sbjct: 292 YTPEPARITSPDKPRPMPMDTSVFESPFSDPEELKDKKLFLKRDNLLIADIELGCGNFGS 351

Query: 525 VYRAQLPDGK---LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQ 581
           V +      K    +A+K L K+ + +   +E +     + ++ +  IV L G C     
Sbjct: 352 VRQGVYRMRKKQIDVAIKVL-KQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAE-A 409

Query: 582 RLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFK 641
            +L+ E    G L   L    E    +  +    +    +  ++YL E      VHRN  
Sbjct: 410 LMLVMEMAGGGPLHKFLVGKRE---EIPVSNVAELLHQVSMGMKYLEEKN---FVHRNLA 463

Query: 642 SANILLDDDLAVSVSDCGLAPLISSG 667
           + N+LL +     +SD GL+  + + 
Sbjct: 464 ARNVLLVNRHYAKISDFGLSKALGAD 489

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 90.9 bits (226), Expect = 3e-19
 Identities = 42/143 (29%), Positives = 59/143 (41%), Gaps = 6/143 (4%)

Query: 103 SSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLS 162
            +  V D  +     SIPS L   M++  LS N+ +      L     L  + L ++ ++
Sbjct: 5   DASGVCDGRSRSFT-SIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63

Query: 163 GEIPDAFQSLTGLINLDLSSNNLSGELPPS-LENLSQLTTLHLQNNQLS--GTLDVLQDL 219
               DAF SL  L +LDLS N+LS  L  S    LS L  L+L  N     G   +  +L
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122

Query: 220 P-LRDLNIENNLFSGPIPEKMLQ 241
             L+ L I N      I      
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFA 145

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 82.5 bits (204), Expect = 1e-16
 Identities = 40/180 (22%), Positives = 66/180 (36%), Gaps = 30/180 (16%)

Query: 102 FSSIRVIDLSNNHI-----GGSIPSILPVTMQNFFLSDNQFS--GSIPSSLATLTLLTDM 154
             S+  +DLS N +       S       ++Q   LS N           L TL  LT +
Sbjct: 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL 392

Query: 155 SLNNNLLSGEIPDAFQSLTGLINLDLSSNNLS---GELPPSLE--------------NLS 197
            ++ N     +PD+ Q    +  L+LSS  +      +P +LE               L 
Sbjct: 393 DISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLP 451

Query: 198 QLTTLHLQNNQLSGTLDVLQDLP-LRDLNIENNLFSGPIPEKMLQIPNFRK---DGNPFN 253
           +L  L++  N+L  TL      P L  + I  N           ++ + +K     NP++
Sbjct: 452 RLQELYISRNKLK-TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 80.2 bits (198), Expect = 7e-16
 Identities = 25/155 (16%), Positives = 58/155 (37%), Gaps = 14/155 (9%)

Query: 86  LNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFF---LSDNQFSGSI- 141
           +    L  +L         ++ I + N+ +   +P      +++     LS+N       
Sbjct: 293 IPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYL 351

Query: 142 --PSSLATLTLLTDMSLNNNLLS--GEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLS 197
              +       L  + L+ N L    +  +   +L  L +LD+S N     +P S +   
Sbjct: 352 KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE 410

Query: 198 QLTTLHLQNNQLS----GTLDVLQDLPLRDLNIEN 228
           ++  L+L +  +          L+ L + + N+++
Sbjct: 411 KMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDS 445

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 74.4 bits (183), Expect = 5e-14
 Identities = 30/150 (20%), Positives = 56/150 (37%), Gaps = 8/150 (5%)

Query: 102 FSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLL 161
            + +   + S + +   +  +  VT++   +        + +  + L  +  +++ N+ +
Sbjct: 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322

Query: 162 SGEIPDAFQSLTGLINLDLSSNNLSGELPPS---LENLSQLTTLHLQNNQLS---GTLDV 215
                   Q L  L  LDLS N +  E   +         L TL L  N L     T ++
Sbjct: 323 FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI 382

Query: 216 LQDLP-LRDLNIENNLFSGPIPEKMLQIPN 244
           L  L  L  L+I  N F  P+P+       
Sbjct: 383 LLTLKNLTSLDISRNTFH-PMPDSCQWPEK 411

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 73.2 bits (180), Expect = 1e-13
 Identities = 30/170 (17%), Positives = 63/170 (37%), Gaps = 14/170 (8%)

Query: 99  LGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPSSLATLTLLTDMSL 156
           L A ++++V+ L ++ I            ++++  LSDN  S    S    L+ L  ++L
Sbjct: 46  LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105

Query: 157 NNNLLSG-EIPDAFQSLTGLINLDLSSNNLSGELPP-SLENLSQLTTLHLQNNQLS---- 210
             N      +   F +LT L  L + +     E+       L+ L  L ++   L     
Sbjct: 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165

Query: 211 GTLDVLQDLPLRDLN------IENNLFSGPIPEKMLQIPNFRKDGNPFNS 254
            +L  ++D+    L+      +           + L++ +       F+ 
Sbjct: 166 QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSP 215

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 71.7 bits (176), Expect = 3e-13
 Identities = 26/169 (15%), Positives = 60/169 (35%), Gaps = 18/169 (10%)

Query: 103 SSIRVIDLSNNHIGGSIPSILP----VTMQNFFLSDNQFSGSIP-SSLATLTLLTDMSLN 157
           SS++ ++L  N    ++           +Q   + + +    I     A LT L ++ + 
Sbjct: 98  SSLKYLNLMGNPYQ-TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156

Query: 158 NNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSG------ 211
              L      + +S+  + +L L  +  +  L    + LS +  L L++  L+       
Sbjct: 157 ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL 216

Query: 212 ----TLDVLQDLPLRDLNIENNLFSG--PIPEKMLQIPNFRKDGNPFNS 254
                   ++ L  R   + +  F+    +   +L++     D    N 
Sbjct: 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 100 GAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNN 159
               ++ V+D+SNN++  S    LP  +Q  ++S N+   ++P + +   +L  M ++ N
Sbjct: 428 CIPQTLEVLDVSNNNLD-SFSLFLP-RLQELYISRNKLK-TLPDA-SLFPVLLVMKISRN 483

Query: 160 LLSGEIPDAFQSLTGLINLDLSSNNL 185
            L       F  LT L  + L +N  
Sbjct: 484 QLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.5 bits (147), Expect = 1e-09
 Identities = 29/171 (16%), Positives = 57/171 (33%), Gaps = 22/171 (12%)

Query: 84  IILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPS 143
           + L+ +     L       SS+R ++L + ++     S LPV   +  +    F GS+ +
Sbjct: 177 LTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT 236

Query: 144 SLATLTLLTDMSLNNNLLSGEIPD--------------------AFQSLTGLINLDLSSN 183
             +   LL  +     L   E  D                           +  L +   
Sbjct: 237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQF 296

Query: 184 NLSGELPPSLENLSQLTTLHLQNNQLSG-TLDVLQDLP-LRDLNIENNLFS 232
            L  +L      L ++  + ++N+++        Q L  L  L++  NL  
Sbjct: 297 YLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.6 bits (124), Expect = 6e-07
 Identities = 18/179 (10%), Positives = 51/179 (28%), Gaps = 24/179 (13%)

Query: 86  LNGANLGGELGEN-LGAFSSIRVIDLSNNHIGGSIPSILPV--TMQNFFLSDNQFSGSIP 142
           +       E+        +S+  +++    +       L     + +  L  ++ +  + 
Sbjct: 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE 189

Query: 143 SSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLS-------GELPPSLEN 195
                L+ +  + L +  L+               +   +   S        EL   L  
Sbjct: 190 IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY 249

Query: 196 LSQLTTLHLQNNQLSGTLDV-------------LQDLPLRDLNIENNLFSGPIPEKMLQ 241
           + +L+ +   +  L+G  D              ++ + +R L+I            +  
Sbjct: 250 ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF-YDLSTVYS 307

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 91.4 bits (227), Expect = 3e-19
 Identities = 33/142 (23%), Positives = 52/142 (36%), Gaps = 9/142 (6%)

Query: 106 RVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEI 165
           R+      ++   +P +L  T +   LS N       SS   L  L  + L +      I
Sbjct: 7   RIAFYRFCNLT-QVPQVLN-TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 166 -PDAFQSLTGLINLDLSSNNLSGELPPS-LENLSQLTTLHLQNNQLSGTL---DVLQDLP 220
             +AF++L  L  LDL S+ +   L P   + L  L  L L    LS  +      ++L 
Sbjct: 65  DKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123

Query: 221 -LRDLNIENNLFSGPIPEKMLQ 241
            L  L++  N            
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFG 145

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 91.0 bits (226), Expect = 4e-19
 Identities = 31/156 (19%), Positives = 59/156 (37%), Gaps = 10/156 (6%)

Query: 99  LGAFSSIRVIDLSNNHIGGSIPSILPVTMQN---FFLSDNQFSGSIPSSLATLTLLTDMS 155
                 +++++L + +   +I       + N     L  ++     P +   L  L ++ 
Sbjct: 44  FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103

Query: 156 LNNNLLSGEI--PDAFQSLTGLINLDLSSNNLSG-ELPPSLENLSQLTTLHLQNNQLS-- 210
           L    LS  +     F++L  L  LDLS N +    L PS   L+ L ++   +NQ+   
Sbjct: 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163

Query: 211 --GTLDVLQDLPLRDLNIENNLFSGPIPEKMLQIPN 244
               L+ LQ   L   ++  N     +     +  N
Sbjct: 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 81.4 bits (201), Expect = 5e-16
 Identities = 37/162 (22%), Positives = 62/162 (38%), Gaps = 11/162 (6%)

Query: 104 SIRVIDLSNNHIGGSIPSILPVTMQN---FFLSDNQFSG-SIPSSLATLTLLTDMSLNNN 159
           +  +I LS N +         + + +     L+ N+FS  S   + +    L  + L  N
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461

Query: 160 LLSGEI-----PDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLD 214
           +L          D F+ L+ L  L L+ N L+   P    +L+ L  L L +N+L+  L 
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLS 520

Query: 215 VLQDLP-LRDLNIENNLFSGPIPEKMLQIPNFRKDGNPFNST 255
                  L  L+I  N    P P+  + +       N F   
Sbjct: 521 HNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICE 562

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 78.3 bits (193), Expect = 4e-15
 Identities = 29/142 (20%), Positives = 56/142 (39%), Gaps = 8/142 (5%)

Query: 98  NLGAFSSIRVIDLSNNHIG----GSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTD 153
           +L     I       ++I      +   +   ++++  LS             TL  L  
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294

Query: 154 MSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPP-SLENLSQLTTLHLQNNQLSG- 211
           ++L  N ++    +AF  L  L  L+LS N L  EL   +   L ++  + LQ N ++  
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAII 353

Query: 212 TLDVLQDLP-LRDLNIENNLFS 232
                + L  L+ L++ +N  +
Sbjct: 354 QDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 76.0 bits (187), Expect = 2e-14
 Identities = 32/156 (20%), Positives = 60/156 (38%), Gaps = 20/156 (12%)

Query: 100 GAF---SSIRVIDLSNNHIGGSIPSILPVTMQN---FFLSDNQFSGSI--PSSLATLTLL 151
            AF    ++R++DL ++ I   +       + +     L     S ++        L  L
Sbjct: 67  EAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125

Query: 152 TDMSL-NNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQ--LTTLHLQNNQ 208
           T + L  N + S  +  +F  L  L ++D SSN +       LE L    L+   L  N 
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185

Query: 209 LS--------GTLDVLQDLPLRDLNIENNLFSGPIP 236
           L           ++  +++ L  L++  N ++  I 
Sbjct: 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT 221

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 73.3 bits (180), Expect = 1e-13
 Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 11/135 (8%)

Query: 102 FSSIRVIDLSNNHIGGSIPSILPVTMQN---FFLSDNQFSGSIPSSLATLTLLTDMSLNN 158
              ++V++L+ N I   I       + N     LS N       S+   L  +  + L  
Sbjct: 289 LKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347

Query: 159 NLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQD 218
           N ++      F+ L  L  LDL  N L+     ++  +  +  + L  N+L  TL  + +
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV-TLPKI-N 400

Query: 219 LPLRDLNIENNLFSG 233
           L    +++  N    
Sbjct: 401 LTANLIHLSENRLEN 415

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 67.9 bits (166), Expect = 7e-12
 Identities = 31/138 (22%), Positives = 49/138 (35%), Gaps = 20/138 (14%)

Query: 103 SSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLS 162
            S+  + L  N +  +  + L                        L+ L  + LN+N L+
Sbjct: 451 PSLEQLFLGENMLQLAWETELC-----------------WDVFEGLSHLQVLYLNHNYLN 493

Query: 163 GEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLPLR 222
              P  F  LT L  L L+SN L+  L  +    + L  L +  NQL    +    + L 
Sbjct: 494 SLPPGVFSHLTALRGLSLNSNRLT-VLSHND-LPANLEILDISRNQLL-APNPDVFVSLS 550

Query: 223 DLNIENNLFSGPIPEKML 240
            L+I +N F         
Sbjct: 551 VLDITHNKFICECELSTF 568

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.0 bits (143), Expect = 3e-09
 Identities = 25/157 (15%), Positives = 43/157 (27%), Gaps = 27/157 (17%)

Query: 103 SSIRVIDLSNNHIGGSIPSILPVTMQNF---FLSDNQFSGSIPSSLATLTL--LTDMSLN 157
            ++  +DLS N I           + +      S NQ        L  L    L+  SL 
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182

Query: 158 NNLLSGEIPDAFQSLTGLI-NLDLSSNNLSG-----------------ELPPSLENLSQL 199
            N L   +   +        N+ L   ++SG                     SL     +
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242

Query: 200 TTLHLQNNQLS----GTLDVLQDLPLRDLNIENNLFS 232
                  + +      T   L    +R L++ +    
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF 279

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.6 bits (116), Expect = 6e-06
 Identities = 27/149 (18%), Positives = 55/149 (36%), Gaps = 11/149 (7%)

Query: 86  LNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPS 143
           L  A       +     S ++V+ L++N++    P +      ++   L+ N+ +  +  
Sbjct: 463 LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSH 521

Query: 144 SLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELP----PSLENLSQL 199
           +      L  + ++ N L    PD F SL+    LD++ N    E       +  N + +
Sbjct: 522 N-DLPANLEILDISRNQLLAPNPDVFVSLS---VLDITHNKFICECELSTFINWLNHTNV 577

Query: 200 TTLHLQNNQLSGTLDVLQDLPLRDLNIEN 228
           T      +      D    + L  L+ E 
Sbjct: 578 TIAGPPADIYCVYPDSFSGVSLFSLSTEG 606

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 88.1 bits (219), Expect = 4e-19
 Identities = 40/157 (25%), Positives = 62/157 (39%), Gaps = 16/157 (10%)

Query: 517 IGAGMLGSVYRAQLPDGK------LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           +G G  G VY  Q+           +AVK L +  S Q + D FL     I +  H NIV
Sbjct: 38  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELD-FLMEALIISKFNHQNIV 96

Query: 571 ELKGYCAEHGQRLLIYEYCSNGTLQDMLHS---DDELKNNLSWNTRIRMALGAARALEYL 627
              G   +   R ++ E  + G L+  L          ++L+    + +A   A   +YL
Sbjct: 97  RCIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYL 156

Query: 628 HEICQPPIVHRNFKSANILLD---DDLAVSVSDCGLA 661
            E      +HR+  + N LL          + D G+A
Sbjct: 157 EENH---FIHRDIAARNCLLTCPGPGRVAKIGDFGMA 190

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 86.5 bits (215), Expect = 7e-19
 Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 12/157 (7%)

Query: 509 NSFSQENLIGAGMLGSVYRAQL--PDGKLL--AVKKLDKRASSQQKDDEFLELVNNIDRI 564
                  ++G G  G VY        G+ +  AVK   K+  +    ++F+     +  +
Sbjct: 12  EDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTC-KKDCTLDNKEKFMSEAVIMKNL 70

Query: 565 RHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARAL 624
            H +IV+L G   E     +I E    G L   L  +   KN+L   T +  +L   +A+
Sbjct: 71  DHPHIVKLIGIIEEE-PTWIIMELYPYGELGHYLERN---KNSLKVLTLVLYSLQICKAM 126

Query: 625 EYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
            YL  I     VHR+    NIL+     V + D GL+
Sbjct: 127 AYLESIN---CVHRDIAVRNILVASPECVKLGDFGLS 160

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 88.8 bits (220), Expect = 9e-19
 Identities = 30/168 (17%), Positives = 64/168 (38%), Gaps = 9/168 (5%)

Query: 97  ENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSL 156
           + L    SI  +  +NN+I   +        +N +L++N+ +          + +  + L
Sbjct: 93  QELLVGPSIETLHAANNNI-SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151

Query: 157 NNNLLSG-EIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDV 215
             N +      +   S   L +L+L  N +  ++   +   ++L TL L +N+L+     
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAFMGPE 209

Query: 216 LQDLP-LRDLNIENNLFSGPIPEKMLQIPNFRK---DGNPFNSTVAPS 259
            Q    +  +++ NN     I + +    N       GN F+      
Sbjct: 210 FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD 256

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 84.5 bits (209), Expect = 2e-17
 Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 7/146 (4%)

Query: 99  LGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSG-SIPSSLATLTLLTDMS 155
                  + I L+NN I             +Q   L  N+    +     A+   L  ++
Sbjct: 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 156 LNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDV 215
           L  N +  ++         L  LDLSSN L+  + P  ++ + +T + L+NN+L      
Sbjct: 176 LQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKA 232

Query: 216 LQDLP-LRDLNIENNLFSGPIPEKML 240
           L+    L   ++  N F         
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFF 258

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 84.5 bits (209), Expect = 2e-17
 Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 132 LSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPP 191
           ++D+    ++ S   +   + ++ L+ N LS          T L  L+LSSN L      
Sbjct: 17  VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TL 74

Query: 192 SLENLSQLTTLHLQNNQLSGTLDVLQDLP-LRDLNIENNLFSGPIPEKMLQ 241
            LE+LS L TL L NN +      L   P +  L+  NN  S  +     Q
Sbjct: 75  DLESLSTLRTLDLNNNYVQ----ELLVGPSIETLHAANNNISR-VSCSRGQ 120

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 78.0 bits (192), Expect = 2e-15
 Identities = 25/149 (16%), Positives = 58/149 (38%), Gaps = 10/149 (6%)

Query: 98  NLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLN 157
           +L + S++R +DL+NN++   +      +++    ++N  S  +  S        ++ L 
Sbjct: 75  DLESLSTLRTLDLNNNYV-QELLV--GPSIETLHAANNNIS-RVSCS--RGQGKKNIYLA 128

Query: 158 NNLLSGEIPDAFQSLTGLINLDLSSNNLSG-ELPPSLENLSQLTTLHLQNNQLSGTLDVL 216
           NN ++          + +  LDL  N +          +   L  L+LQ N +   +   
Sbjct: 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQ 187

Query: 217 QDLP-LRDLNIENNLFSGPIPEKMLQIPN 244
                L+ L++ +N  +  +  +      
Sbjct: 188 VVFAKLKTLDLSSNKLAF-MGPEFQSAAG 215

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 77.2 bits (190), Expect = 5e-15
 Identities = 23/135 (17%), Positives = 54/135 (40%), Gaps = 13/135 (9%)

Query: 99  LGAFSSIRVIDLSNNHIGGSIPSILPVT-MQNFFLSDNQFSGSIPSSLATLTLLTDMSLN 157
           L  F+ + +++LS+N +      +  ++ ++   L++N         L     +  +   
Sbjct: 54  LAPFTKLELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAA 107

Query: 158 NNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSG--TLDV 215
           NN +S       Q      N+ L++N ++          S++  L L+ N++      ++
Sbjct: 108 NNNISRVSCSRGQGKK---NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 216 LQDLP-LRDLNIENN 229
                 L  LN++ N
Sbjct: 165 AASSDTLEHLNLQYN 179

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 75.3 bits (185), Expect = 2e-14
 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 2/94 (2%)

Query: 140 SIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQL 199
           +I              + ++ L   +    QS   +  LDLS N LS      L   ++L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 200 TTLHLQNNQLSGTLDVLQDLP-LRDLNIENNLFS 232
             L+L +N L      L+ L  LR L++ NN   
Sbjct: 61  ELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ 93

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 73.7 bits (181), Expect = 6e-14
 Identities = 26/150 (17%), Positives = 51/150 (34%), Gaps = 6/150 (4%)

Query: 94  ELGENLGAFSSIRVIDLSNNHIGGSIPSILPVT-MQNFFLSDNQFSGSIPSSLATLTLLT 152
              E   +  ++  ++L  N I   +   +    ++   LS N+ +  +     +   +T
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVT 217

Query: 153 DMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLS-GELPPSLENLSQLTTLHLQNNQLSG 211
            +SL NN L   I  A +    L + DL  N    G L        ++ T+  Q  +   
Sbjct: 218 WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK-KL 275

Query: 212 TLDVLQDLPLRDLNIENNLFSGPIPEKMLQ 241
           T    ++  +  L          +P     
Sbjct: 276 TGQNEEECTVPTLGHYGAYCCEDLPAPFAD 305

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 69.1 bits (169), Expect = 2e-12
 Identities = 29/148 (19%), Positives = 61/148 (41%), Gaps = 14/148 (9%)

Query: 86  LNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPS 143
           +  ++L   L     +  +++ +DLS N +     + L     ++   LS N        
Sbjct: 17  VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TL 74

Query: 144 SLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLH 203
            L +L+ L  + LNNN +  E+         +  L  ++NN+S  +  S         ++
Sbjct: 75  DLESLSTLRTLDLNNNYVQ-ELL----VGPSIETLHAANNNIS-RVSCS--RGQGKKNIY 126

Query: 204 LQNNQLSGTLD-VLQDLP-LRDLNIENN 229
           L NN+++   D        ++ L+++ N
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLN 154

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.0 bits (148), Expect = 6e-10
 Identities = 16/178 (8%), Positives = 36/178 (20%), Gaps = 7/178 (3%)

Query: 94  ELGENLGAFSSIRVIDLSNNHI-GGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLT 152
            + + L    ++   DL  N    G++        +   ++          +    T+ T
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 153 DMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSG----ELPPSLENLSQLTTLHLQNNQ 208
                              L  L   + +  +  G     L    EN ++   +     Q
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQ 347

Query: 209 LSG-TLDVLQDLP-LRDLNIENNLFSGPIPEKMLQIPNFRKDGNPFNSTVAPSRPPTS 264
                  V         L  +       +                    +        
Sbjct: 348 YRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEE 405

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 11/157 (7%), Positives = 35/157 (22%), Gaps = 11/157 (7%)

Query: 86  LNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQF-------S 138
           +    +    G+N    +   +           +P+     +      ++         +
Sbjct: 267 VAKQTVKKLTGQNEEECTVPTLGHYGAYCCE-DLPAPFADRLIALKRKEHALLSGQGSET 325

Query: 139 GSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQ 198
             +           ++          I          I L+     L  ++       ++
Sbjct: 326 ERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAE 385

Query: 199 LTTL---HLQNNQLSGTLDVLQDLPLRDLNIENNLFS 232
           L       +   +L    +    L L    ++     
Sbjct: 386 LDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEM 422

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 86.2 bits (214), Expect = 9e-19
 Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 7/143 (4%)

Query: 103 SSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLS 162
                       +  ++P  +P   Q  FL  N+ S    +S      LT + L++N+L+
Sbjct: 11  EPKVTTSCPQQGLQ-AVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA 69

Query: 163 GEIPDAFQSLTGLINLDLSSNNLSGELPPS-LENLSQLTTLHLQNNQLSGTL--DVLQDL 219
                AF  L  L  LDLS N     + P+    L +L TLHL    L   L   + + L
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGL 128

Query: 220 P-LRDLNIENNLFSGPIPEKMLQ 241
             L+ L +++N     +P+   +
Sbjct: 129 AALQYLYLQDNALQA-LPDDTFR 150

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 81.2 bits (201), Expect = 4e-17
 Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 15/141 (10%)

Query: 100 GAFS---SIRVIDLSNNHIGGSIPSILPVTM---QNFFLSDNQFSGSIPS-SLATLTLLT 152
             F     +  + L    +   +   L   +   Q  +L DN    ++P  +   L  LT
Sbjct: 99  ATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLT 156

Query: 153 DMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPP-SLENLSQLTTLHLQNNQLSG 211
            + L+ N +S     AF+ L  L  L L  N ++  + P +  +L +L TL+L  N LS 
Sbjct: 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS- 214

Query: 212 TL--DVLQDLP-LRDLNIENN 229
            L  + L  L  L+ L + +N
Sbjct: 215 ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.8 bits (161), Expect = 6e-12
 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 9/117 (7%)

Query: 100 GAFS---SIRVIDLSNNHIGGSIPSILPVTMQN---FFLSDNQFSGSIPSSLATLTLLTD 153
           G F    +++ + L +N +  ++P      + N    FL  N+ S     +   L  L  
Sbjct: 123 GLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 154 MSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPS-LENLSQLTTLHLQNNQL 209
           + L+ N ++   P AF+ L  L+ L L +NNLS  LP   L  L  L  L L +N  
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 46/195 (23%), Positives = 80/195 (41%), Gaps = 25/195 (12%)

Query: 507 YTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR 565
           Y + F +  ++G G  G V +A+   D +  A+KK+     +++K    L  V  +  + 
Sbjct: 4   YASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRH---TEEKLSTILSEVMLLASLN 60

Query: 566 HANIVELKGYCAEHGQRLL----------IY---EYCSNGTLQDMLHSDDELKN-NLSWN 611
           H  +V       E    +           ++   EYC NGTL D++HS++  +  +  W 
Sbjct: 61  HQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWR 120

Query: 612 TRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQ 671
              R  L    AL Y+H      I+HR+ K  NI +D+   V + D GLA  +       
Sbjct: 121 L-FRQIL---EALSYIH---SQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDIL 173

Query: 672 VSHNLTIMRAGGVTH 686
              +  +  +     
Sbjct: 174 KLDSQNLPGSSDNLT 188

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 86.1 bits (214), Expect = 1e-18
 Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 22/166 (13%)

Query: 514 ENLIGAGMLGSVYRAQLPDGK------LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHA 567
              +G    G VY+  L           +A+K L  +A    +++ F        R++H 
Sbjct: 14  MEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREE-FRHEAMLRARLQHP 72

Query: 568 NIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHS------------DDELKNNLSWNTRIR 615
           N+V L G   +     +I+ YCS+G L + L              D  +K+ L     + 
Sbjct: 73  NVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVH 132

Query: 616 MALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           +    A  +EYL       +VH++  + N+L+ D L V +SD GL 
Sbjct: 133 LVAQIAAGMEYLSSH---HVVHKDLATRNVLVYDKLNVKISDLGLF 175

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 87.1 bits (216), Expect = 1e-18
 Identities = 39/167 (23%), Positives = 78/167 (46%), Gaps = 10/167 (5%)

Query: 503 SLQQYTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNI 561
           S+++Y     +   IG G  G     +   DG+   +K+++    S ++ +E    V  +
Sbjct: 22  SMEKYV----RLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVL 77

Query: 562 DRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAA 621
             ++H NIV+ +    E+G   ++ +YC  G L   +++          +  +   +   
Sbjct: 78  ANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQK--GVLFQEDQILDWFVQIC 135

Query: 622 RALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
            AL+++H+     I+HR+ KS NI L  D  V + D G+A +++S  
Sbjct: 136 LALKHVHD---RKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV 179

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 89.1 bits (221), Expect = 1e-18
 Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 12/160 (7%)

Query: 509 NSFSQENLIGAGMLGSVYRAQL--PDGKLL--AVKKLDKRASSQQKDDEFLELVNNIDRI 564
                   IG G  G V++     P+   +  A+K      S   ++  FL+    + + 
Sbjct: 390 ERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREK-FLQEALTMRQF 448

Query: 565 RHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARAL 624
            H +IV+L G   E+    +I E C+ G L+  L      K +L   + I  A   + AL
Sbjct: 449 DHPHIVKLIGVITEN-PVWIIMELCTLGELRSFLQVR---KFSLDLASLILYAYQLSTAL 504

Query: 625 EYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI 664
            YL        VHR+  + N+L+  +  V + D GL+  +
Sbjct: 505 AYLESKR---FVHRDIAARNVLVSSNDCVKLGDFGLSRYM 541

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 86.2 bits (214), Expect = 1e-18
 Identities = 39/164 (23%), Positives = 61/164 (37%), Gaps = 12/164 (7%)

Query: 104 SIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLS- 162
           S   I  ++  +  S+P+ +P +     L  N+           LT LT +SL++N LS 
Sbjct: 8   SGTEIRCNSKGLT-SVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 163 -GEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLS--GTLDVLQDL 219
            G    +    T L  LDLS N +   +  +   L QL  L  Q++ L       V   L
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 220 P-LRDLNIENNLFSGPIPEKMLQ-IPNFRK---DGNPFNSTVAP 258
             L  L+I +          +   + +       GN F     P
Sbjct: 126 RNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLP 168

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 85.1 bits (211), Expect = 3e-18
 Identities = 32/151 (21%), Positives = 53/151 (35%), Gaps = 26/151 (17%)

Query: 100 GAFS---SIRVIDLSNNHIGGSIPSILPVTMQNFF---------LSDNQFSGSIPSSLAT 147
           G F     +  + LS+N +     S      Q+ F         LS N    ++ S+   
Sbjct: 46  GVFDKLTQLTKLSLSSNGL-----SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLG 99

Query: 148 LTLLTDMSLNNNLLSGEIPD--AFQSLTGLINLDLSSNNLSGELPP-SLENLSQLTTLHL 204
           L  L  +   ++ L  ++ +   F SL  LI LD+S  +            LS L  L +
Sbjct: 100 LEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKM 157

Query: 205 QNNQLSGTL--DVLQDLP-LRDLNIENNLFS 232
             N        D+  +L  L  L++      
Sbjct: 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 80.4 bits (199), Expect = 9e-17
 Identities = 34/146 (23%), Positives = 58/146 (39%), Gaps = 17/146 (11%)

Query: 100 GAFS---SIRVIDLSNNHIGGSIPSI----LPVTMQNFFLSDNQFSGSIPS-SLATLTLL 151
             F    ++  +D+S+ H      +     L  +++   ++ N F  +        L  L
Sbjct: 120 SVFLSLRNLIYLDISHTHTR-VAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNL 177

Query: 152 TDMSLNNNLLSGEIP-DAFQSLTGLINLDLSSNNLSGELPPS-LENLSQLTTLHLQNNQL 209
           T + L+   L  ++   AF SL+ L  L++S NN    L     + L+ L  L    N +
Sbjct: 178 TFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHI 235

Query: 210 SG-TLDVLQDLP--LRDLNIENNLFS 232
                  LQ  P  L  LN+  N F+
Sbjct: 236 MTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 17/141 (12%)

Query: 103 SSIRVIDLSNNHIGGSIPSILPVTMQNF------FLSDNQFSGSIPSS--LATLTLLTDM 154
           +S++ +DLS N +       +                 +     +       +L  L  +
Sbjct: 78  TSLKYLDLSFNGV-----ITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYL 131

Query: 155 SLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPP-SLENLSQLTTLHLQNNQLSG-T 212
            +++          F  L+ L  L ++ N+      P     L  LT L L   QL   +
Sbjct: 132 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 191

Query: 213 LDVLQDLP-LRDLNIENNLFS 232
                 L  L+ LN+ +N F 
Sbjct: 192 PTAFNSLSSLQVLNMSHNNFF 212

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 86.2 bits (214), Expect = 1e-18
 Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 9/147 (6%)

Query: 99  LGAFSSIRVIDLSNNHIGGSIPSILPVTMQN---FFLSDNQFSG-SIPSSLATLTLLTDM 154
                  + I L+NN I   +  +            L  N+    +     A+   L  +
Sbjct: 116 CSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 155 SLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLD 214
           +L  N +  ++         L  LDLSSN L+  + P  ++ + +T + L+NN+L     
Sbjct: 175 NLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEK 231

Query: 215 VLQDLP-LRDLNIENNLFSGPIPEKML 240
            L+    L   ++  N F         
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFF 258

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 83.5 bits (207), Expect = 1e-17
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 6/110 (5%)

Query: 132 LSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPP 191
           ++D+    ++ S   +   + ++ L+ N LS          T L  L+LSSN L      
Sbjct: 17  VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TL 74

Query: 192 SLENLSQLTTLHLQNNQLSGTLDVLQDLPLRDLNIENNLFSGPIPEKMLQ 241
            LE+LS L TL L NN +   L V     +  L+  NN  S  +     Q
Sbjct: 75  DLESLSTLRTLDLNNNYVQ-ELLVGPS--IETLHAANNNISR-VSCSRGQ 120

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 78.1 bits (193), Expect = 6e-16
 Identities = 26/150 (17%), Positives = 51/150 (34%), Gaps = 6/150 (4%)

Query: 94  ELGENLGAFSSIRVIDLSNNHIGGSIPSILPVT-MQNFFLSDNQFSGSIPSSLATLTLLT 152
              E   +  ++  ++L  N I   +   +    ++   LS N+ +  +     +   +T
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVT 217

Query: 153 DMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLS-GELPPSLENLSQLTTLHLQNNQLSG 211
            +SL NN L   I  A +    L + DL  N    G L        ++ T+  Q  +   
Sbjct: 218 WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL- 275

Query: 212 TLDVLQDLPLRDLNIENNLFSGPIPEKMLQ 241
           T    ++  +  L          +P     
Sbjct: 276 TGQNEEECTVPTLGHYGAYCCEDLPAPFAD 305

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 76.6 bits (189), Expect = 3e-15
 Identities = 24/138 (17%), Positives = 56/138 (40%), Gaps = 15/138 (10%)

Query: 97  ENLGAFSSIRVIDLSNNHIGGSIPSILPVT-MQNFFLSDNQFSGSIPSSLATLTLLTDMS 155
            +L  F+ + +++LS+N +      +  ++ ++   L++N         L     +  + 
Sbjct: 52  ADLAPFTKLELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLH 105

Query: 156 LNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPP-SLENLSQLTTLHLQNNQLSG--T 212
             NN +S       Q      N+ L++N ++  L        S++  L L+ N++     
Sbjct: 106 AANNNISRVSCSRGQGKK---NIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNF 161

Query: 213 LDVLQDLP-LRDLNIENN 229
            ++      L  LN++ N
Sbjct: 162 AELAASSDTLEHLNLQYN 179

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 74.6 bits (184), Expect = 1e-14
 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 2/94 (2%)

Query: 140 SIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQL 199
           +I              + ++ L   +    QS   +  LDLS N LS      L   ++L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 200 TTLHLQNNQLSGTLDVLQDLP-LRDLNIENNLFS 232
             L+L +N L      L+ L  LR L++ NN   
Sbjct: 61  ELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ 93

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 70.4 bits (173), Expect = 3e-13
 Identities = 28/148 (18%), Positives = 60/148 (40%), Gaps = 14/148 (9%)

Query: 86  LNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPS 143
           +  ++L   L     +  +++ +DLS N +     + L     ++   LS N        
Sbjct: 17  VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETL- 74

Query: 144 SLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLH 203
            L +L+ L  + LNNN +  E+         +  L  ++NN+S  +            ++
Sbjct: 75  DLESLSTLRTLDLNNNYVQ-ELL----VGPSIETLHAANNNIS-RVSC--SRGQGKKNIY 126

Query: 204 LQNNQLSGTLD-VLQDLP-LRDLNIENN 229
           L NN+++   D        ++ L+++ N
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLN 154

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 85.7 bits (213), Expect = 2e-18
 Identities = 38/163 (23%), Positives = 68/163 (41%), Gaps = 23/163 (14%)

Query: 517 IGAGMLGSVYRAQLPDGK------LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           +G G  G V+ A+  +        L+AVK L K  +   + D F      +  ++H +IV
Sbjct: 23  LGEGAFGKVFLAECYNLSPTKDKMLVAVKAL-KDPTLAARKD-FQREAELLTNLQHEHIV 80

Query: 571 ELKGYCAEHGQRLLIYEYCSNGTLQDML------------HSDDELKNNLSWNTRIRMAL 618
           +  G C +    ++++EY  +G L   L                + K  L  +  + +A 
Sbjct: 81  KFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIAS 140

Query: 619 GAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
             A  + YL        VHR+  + N L+  +L V + D G++
Sbjct: 141 QIASGMVYLASQH---FVHRDLATRNCLVGANLLVKIGDFGMS 180

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 86.7 bits (215), Expect = 2e-18
 Identities = 40/157 (25%), Positives = 62/157 (39%), Gaps = 16/157 (10%)

Query: 517 IGAGMLGSVYRAQLPDGK------LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           +G G  G VY  Q+           +AVK L +  S Q + D FL     I +  H NIV
Sbjct: 79  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELD-FLMEALIISKFNHQNIV 137

Query: 571 ELKGYCAEHGQRLLIYEYCSNGTLQDMLHS---DDELKNNLSWNTRIRMALGAARALEYL 627
              G   +   R ++ E  + G L+  L          ++L+    + +A   A   +YL
Sbjct: 138 RCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYL 197

Query: 628 HEICQPPIVHRNFKSANILLD---DDLAVSVSDCGLA 661
            E      +HR+  + N LL          + D G+A
Sbjct: 198 EENH---FIHRDIAARNCLLTCPGPGRVAKIGDFGMA 231

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 86.2 bits (214), Expect = 2e-18
 Identities = 37/142 (26%), Positives = 56/142 (39%), Gaps = 9/142 (6%)

Query: 104 SIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSG 163
            +RV+  S+  +   +P  LP       L +N+ +         L  L  + L NN +S 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90

Query: 164 EIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTL--DVLQDLP- 220
             P AF  L  L  L LS N L  ELP  +     L  L +  N+++  +   V   L  
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQ 146

Query: 221 LRDLNIENN-LFSGPIPEKMLQ 241
           +  + +  N L S  I     Q
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQ 168

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 79.7 bits (197), Expect = 2e-16
 Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 17/144 (11%)

Query: 100 GAFSSIRVIDLSNNHIGGSIPSILPVTMQN---FFLSDNQFSGSIPSSLATLTLLTDMSL 156
           G   S+  + L  N I   + +     + N     LS N  S     SLA    L ++ L
Sbjct: 189 GLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 247

Query: 157 NNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPS-------LENLSQLTTLHLQNNQL 209
           NNN L  ++P        +  + L +NN+S  +  +           +  + + L +N +
Sbjct: 248 NNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

Query: 210 SGTL---DVLQDLP-LRDLNIENN 229
                     + +     + + N 
Sbjct: 306 QYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 19/145 (13%)

Query: 100 GAFS---SIRVIDLSNNHIGGSIPSILPVTMQNF------FLSDNQFSGSIPSSLATLTL 150
             F+    + V++L  N +      I     Q         ++D   + +IP  L     
Sbjct: 139 SVFNGLNQMIVVELGTNPL--KSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPS 193

Query: 151 LTDMSLNNNLLSGEIPD-AFQSLTGLINLDLSSNNLSGELPP-SLENLSQLTTLHLQNNQ 208
           LT++ L+ N ++ ++   + + L  L  L LS N++S  +   SL N   L  LHL NN+
Sbjct: 194 LTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNK 251

Query: 209 LSGTLDVLQDLP-LRDLNIENNLFS 232
           L      L D   ++ + + NN  S
Sbjct: 252 LVKVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 72.0 bits (177), Expect = 1e-13
 Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 29/137 (21%)

Query: 100 GAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNN 159
               +++ + +  N I                +  + F+G        L  +  + L  N
Sbjct: 118 KMPKTLQELRVHENEI--------------TKVRKSVFNG--------LNQMIVVELGTN 155

Query: 160 LLSGEI--PDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSG-TLDVL 216
            L        AFQ +  L  + ++  N++  +P  L     LT LHL  N+++      L
Sbjct: 156 PLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASL 212

Query: 217 QDLP-LRDLNIENNLFS 232
           + L  L  L +  N  S
Sbjct: 213 KGLNNLAKLGLSFNSIS 229

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 69.3 bits (170), Expect = 8e-13
 Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 19/149 (12%)

Query: 100 GAFS---SIRVIDLSNNHIGGSIPSILPVTMQN---FFLSDNQFSGSIPSSLATLTLLTD 153
           G F    ++  + L NN I   I       +      +LS NQ    +P  +     L +
Sbjct: 70  GDFKNLKNLHTLILINNKI-SKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQE 125

Query: 154 MSLNNNLLSGEIPDAFQSLTGLINLDLSSNNL-SGELPP-SLENLSQLTTLHLQNNQLS- 210
           + ++ N ++      F  L  +I ++L +N L S  +   + + + +L+ + + +  ++ 
Sbjct: 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185

Query: 211 ---GTLDVLQDLPLRDLNIEN---NLFSG 233
              G    L +L L    I         G
Sbjct: 186 IPQGLPPSLTELHLDGNKITKVDAASLKG 214

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 85.7 bits (212), Expect = 2e-18
 Identities = 36/160 (22%), Positives = 66/160 (41%), Gaps = 15/160 (9%)

Query: 86  LNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPV------TMQNFFLSDNQF-- 137
           +  A+      E +  F ++  +DLS+N   G    I  +      T+Q   L +     
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215

Query: 138 -SGSIPSSLATLTLLTDMSLNNNLLSGEIPD-AFQSLTGLINLDLSSNNLSGELPPSLEN 195
            SG   +  A    L  + L++N L       +    + L +L+LS   L  ++P  L  
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL-- 272

Query: 196 LSQLTTLHLQNNQLSGTLDVLQDLP-LRDLNIENNLFSGP 234
            ++L+ L L  N+L        +LP + +L+++ N F   
Sbjct: 273 PAKLSVLDLSYNRLD-RNPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 70.7 bits (173), Expect = 2e-13
 Identities = 23/147 (15%), Positives = 41/147 (27%), Gaps = 16/147 (10%)

Query: 102 FSSIRVIDLSNNHIGG------SIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMS 155
              + +++L N            +   L   ++   ++           +     L+ + 
Sbjct: 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLD 179

Query: 156 LNNNLLSGEI-------PDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQ 208
           L++N   GE        P  F +L  L   +      SG          QL  L L +N 
Sbjct: 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239

Query: 209 LSGTLDVLQDLP---LRDLNIENNLFS 232
           L              L  LN+      
Sbjct: 240 LRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.5 bits (162), Expect = 5e-12
 Identities = 31/164 (18%), Positives = 53/164 (32%), Gaps = 19/164 (11%)

Query: 98  NLGAFSSIRVIDLSNNHIGGSIP-SILPVTMQN---FFLSDNQFSGSIPSSLATL----- 148
            +   S ++ + L N  + G+ P  +L  T  +     L +  ++    + LA L     
Sbjct: 90  RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLK 148

Query: 149 TLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPS----LENLSQLTTLHL 204
             L  +S+          +  +    L  LDLS N   GE              L  L L
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 205 QNNQLSGTLDVLQDL-----PLRDLNIENNLFSGPIPEKMLQIP 243
           +N  +     V   L      L+ L++ +N             P
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 62.2 bits (151), Expect = 1e-10
 Identities = 33/196 (16%), Positives = 64/196 (32%), Gaps = 28/196 (14%)

Query: 65  DPCGESWQGVQCNASDIIAIILNGANL-----GGELGENLGAFS------SIRVIDLSNN 113
           DP  +      C  +  + +   G +L       +   +LG F+      S++ + +   
Sbjct: 19  DPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAA 78

Query: 114 HIGGSIPSILPVTM-----QNFFLSDNQFSGSIPSSLATLTL--LTDMSLNNNLLSGEIP 166
            I   I       +     Q   L + + +G+ P  L   T   L  ++L N   +    
Sbjct: 79  RIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDA 138

Query: 167 DAFQ----SLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP-- 220
              +       GL  L ++  +        +     L+TL L +N   G   ++  L   
Sbjct: 139 WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198

Query: 221 ----LRDLNIENNLFS 232
               L+ L + N    
Sbjct: 199 KFPTLQVLALRNAGME 214

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 22/128 (17%), Positives = 42/128 (32%), Gaps = 11/128 (8%)

Query: 130 FFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPD---AFQSLTGLINLDLSSNNLS 186
               D +      + +     L  +++    +   I         ++GL  L L +  ++
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 187 GELPPSLENL--SQLTTLHLQNNQLSGTLDVLQDLP------LRDLNIENNLFSGPIPEK 238
           G  PP L       L  L+L+N   +     L +L       L+ L+I          E+
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168

Query: 239 MLQIPNFR 246
           +   P   
Sbjct: 169 VRVFPALS 176

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 87.1 bits (216), Expect = 3e-18
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 8/118 (6%)

Query: 118 SIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIP-DAFQSLTGLI 176
            +P + P  +    LS N  +    +S + L  L  + +        I  + F+ L+ LI
Sbjct: 24  QVPEL-PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLI 82

Query: 177 NLDLSSNNLSGELPPS-LENLSQLTTLHLQNNQLSGTL---DVLQDLP-LRDLNIENN 229
            L L  N    +L       L+ L  L L    L G +   +  + L  L  L + +N
Sbjct: 83  ILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 82.9 bits (205), Expect = 7e-17
 Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 14/136 (10%)

Query: 103 SSIRVIDLSNNHIGGSIPSILP---VTMQNFFLSDNQFSGSIPS-SLATLTLLTDMSLNN 158
           S ++  DLS + I  ++   +      ++   L+ N+ +  I   +   LT L  ++L+ 
Sbjct: 275 SGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQ 332

Query: 159 NLLSGEIPDAFQSLTGLINLDLSSNNLSGELPP-SLENLSQLTTLHLQNNQLS----GTL 213
           N L       F++L  L  LDLS N++   L   S   L  L  L L  NQL     G  
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIF 391

Query: 214 DVLQDLPLRDLNIENN 229
           D L    L+ + +  N
Sbjct: 392 DRLT--SLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 78.6 bits (194), Expect = 1e-15
 Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 21/169 (12%)

Query: 100 GAFSSI---RVIDLSNNHIGGSIPSI----LPVTMQNFFLSDNQFSGSIPSS-LATLTLL 151
            +FS +   + + +     G  I +     L  ++    L  NQF   + +     L  L
Sbjct: 48  TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS-SLIILKLDYNQFL-QLETGAFNGLANL 105

Query: 152 TDMSLNNNLL-SGEIP-DAFQSLTGLINLDLSSNNLSGELPPS--LENLSQLTTLHLQNN 207
             ++L    L    +  + F+ LT L  L L  NN+  ++ P+    N+ +   L L  N
Sbjct: 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPASFFLNMRRFHVLDLTFN 164

Query: 208 QLS----GTLDVLQDLPLRDLNIENN--LFSGPIPEKMLQIPNFRKDGN 250
           ++       L   Q      L + +              +  N  K+ +
Sbjct: 165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS 213

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.8 bits (140), Expect = 6e-09
 Identities = 35/206 (16%), Positives = 58/206 (28%), Gaps = 36/206 (17%)

Query: 100 GAF---SSIRVIDLSNNHIGGSIPSILP-------VTMQNFFLSDNQF-SGSIPS-SLAT 147
             F   SS+ ++ L  N         L          ++   L+        +       
Sbjct: 73  NTFRGLSSLIILKLDYNQF-----LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP 127

Query: 148 LTLLTDMSLNNNLLSGEIPD-AFQSLTGLINLDLSSNNLSGELPPSLENL--SQLTTLHL 204
           LT L  + L +N +    P   F ++     LDL+ N +       L N      T L L
Sbjct: 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187

Query: 205 QNNQLS------------GTLDVLQDLPLRDLNIENNLFSGPIPEKMLQIPNFRK--DGN 250
            +  L             G         +  L++  N F   + ++        K     
Sbjct: 188 SSITLQDMNEYWLGWEKCGNPFKNTS--ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245

Query: 251 PFNSTVAPSRPPTSSVTPPPAPPFFG 276
             NS    S    ++   P    F G
Sbjct: 246 LSNSYNMGSSFGHTNFKDPDNFTFKG 271

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 11/94 (11%)

Query: 100 GAF---SSIRVIDLSNNHIGGSIPSILP---VTMQNFFLSDNQFSGSIPS-SLATLTLLT 152
            AF   + +  ++LS N +G SI S +      ++   LS N    ++   S   L  L 
Sbjct: 317 NAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLK 374

Query: 153 DMSLNNNLLSGEIPD-AFQSLTGLINLDLSSNNL 185
           +++L+ N L   +PD  F  LT L  + L +N  
Sbjct: 375 ELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 85.4 bits (212), Expect = 3e-18
 Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 28/167 (16%)

Query: 517 IGAGMLGSVYRAQL------PDGKLLAVKKLDKRASSQQKDDEFL---ELVNNIDRIRHA 567
           +G G  G V  A           + +AVK L + A+  +     +   +++ +I    H 
Sbjct: 35  LGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRA-LMSELKILIHIGH--HL 91

Query: 568 NIVELKGYCAEHGQ-RLLIYEYCSNGTLQDML------------HSDDELKNNLSWNTRI 614
           N+V L G C + G   ++I E+C  G L   L              +D  K+ L+    I
Sbjct: 92  NVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLI 151

Query: 615 RMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
             +   A+ +E+L        +HR+  + NILL +   V + D GLA
Sbjct: 152 CYSFQVAKGMEFLASRK---CIHRDLAARNILLSEKNVVKICDFGLA 195

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 85.4 bits (212), Expect = 3e-18
 Identities = 48/210 (22%), Positives = 81/210 (38%), Gaps = 32/210 (15%)

Query: 478 AEGTAVKTSTKTAKPFTTARSFTIASLQQYTNSFSQE---------NLIGAGMLGSVYRA 528
           A G+    S    K  +  +   I + Q ++++               +G G  G V+ A
Sbjct: 2   AMGSGSSLSPTEGKG-SGLQGHIIENPQYFSDACVHHIKRRDIVLKWELGEGAFGKVFLA 60

Query: 529 QLPDGK------LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQR 582
           +  +        L+AVK L K AS   + D F      +  ++H +IV   G C E    
Sbjct: 61  ECHNLLPEQDKMLVAVKAL-KEASESARQD-FQREAELLTMLQHQHIVRFFGVCTEGRPL 118

Query: 583 LLIYEYCSNGTLQDML-----------HSDDELKNNLSWNTRIRMALGAARALEYLHEIC 631
           L+++EY  +G L   L             +D     L     + +A   A  + YL  + 
Sbjct: 119 LMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH 178

Query: 632 QPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
               VHR+  + N L+   L V + D G++
Sbjct: 179 ---FVHRDLATRNCLVGQGLVVKIGDFGMS 205

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 85.4 bits (212), Expect = 3e-18
 Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 25/172 (14%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPD------GKLLAVKKLDKRASSQQKDDEFL---ELVN 559
           N+      +GAG  G V  A             +AVK L   A + +K+   +   ++++
Sbjct: 46  NNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEA-LMSELKIMS 104

Query: 560 NIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDML----------HSDDELKNNLS 609
           ++ +  H NIV L G C   G  L+I EYC  G L + L           +     +  S
Sbjct: 105 HLGQ--HENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTAS 162

Query: 610 WNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
               +  +   A+ + +L        +HR+  + N+LL +     + D GLA
Sbjct: 163 TRDLLHFSSQVAQGMAFLASKN---CIHRDVAARNVLLTNGHVAKIGDFGLA 211

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 85.4 bits (212), Expect = 3e-18
 Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 29/168 (17%)

Query: 517 IGAGMLGSVYRAQLPDGKLL--------AVKKLDKRASSQQKDDEFL---ELVNNIDRIR 565
           +G G  G V  A+               AVK L   A+ +   D  +   E++  I +  
Sbjct: 43  LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD-LVSEMEMMKMIGK-- 99

Query: 566 HANIVELKGYCAEHGQRLLIYEYCSNGTLQDML------------HSDDELKNNLSWNTR 613
           H NI+ L G C + G   +I EY S G L++ L              +   +  +++   
Sbjct: 100 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 159

Query: 614 IRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           +      AR +EYL        +HR+  + N+L+ ++  + ++D GLA
Sbjct: 160 VSCTYQLARGMEYLASQK---CIHRDLAARNVLVTENNVMKIADFGLA 204

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 85.2 bits (211), Expect = 4e-18
 Identities = 40/200 (20%), Positives = 71/200 (35%), Gaps = 18/200 (9%)

Query: 484 KTSTKTAKPFTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLD 542
           +T        T          ++  +  + +  +G G  G V+R +    G   AVKK+ 
Sbjct: 33  ETEDNEGVLLTEKLKPVDYEYREEVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVR 92

Query: 543 KRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY-EYCSNGTLQDMLHSD 601
                 +      E +     +    IV L G     G  + I+ E    G+L  ++   
Sbjct: 93  LEVFRVE------E-LVACAGLSSPRIVPLYG-AVREGPWVNIFMELLEGGSLGQLIKQM 144

Query: 602 DELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDD-LAVSVSDCGL 660
             L  + +    +  AL     LEYLH      I+H + K+ N+LL  D    ++ D G 
Sbjct: 145 GCLPEDRALYY-LGQAL---EGLEYLHTRR---ILHGDVKADNVLLSSDGSRAALCDFGH 197

Query: 661 APLISSGSVSQVSHNLTIMR 680
           A  +    + +       + 
Sbjct: 198 ALCLQPDGLGKSLLTGDYIP 217

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 86.3 bits (214), Expect = 4e-18
 Identities = 32/144 (22%), Positives = 54/144 (37%), Gaps = 14/144 (9%)

Query: 102 FSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLL 161
            +    +     ++   +P  +    +   L +NQ      +S   L  L  + L+ N +
Sbjct: 42  SNQFSKVICVRKNLR-EVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 162 SGEIPDAFQSLTGLINLDLSSNNLSGELPP-SLENLSQLTTLHLQNNQLS-------GTL 213
                 AF  L  L  L+L  N L+  +P  +   LS+L  L L+NN +          +
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI 159

Query: 214 DVLQDLPLRDLN----IENNLFSG 233
             L+ L L +L     I    F G
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFEG 183

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.9 bits (174), Expect = 4e-13
 Identities = 39/165 (23%), Positives = 65/165 (39%), Gaps = 40/165 (24%)

Query: 100 GAFS---SIRVIDLSNNHIGGSIPSILPVTMQN-------------------F------- 130
           GAF     ++ + L NN I  SIPS     + +                   F       
Sbjct: 130 GAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR 188

Query: 131 --FLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGE 188
              L+       IP+ L  L  L ++ L+ N LS   P +FQ L  L  L +  + +   
Sbjct: 189 YLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-V 245

Query: 189 LPP-SLENLSQLTTLHLQNNQLSGTL--DVLQDLP-LRDLNIENN 229
           +   + +NL  L  ++L +N L+  L  D+   L  L  +++ +N
Sbjct: 246 IERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.5 bits (173), Expect = 6e-13
 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 100 GAF---SSIRVIDLSNNHIGGSIPSILPVT-MQNFFLSDNQFSGSIPSSLATLTLLTDMS 155
           GAF   S++R ++L+  ++   IP++ P+  +    LS N  S   P S   L  L  + 
Sbjct: 179 GAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237

Query: 156 LNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPS-LENLSQLTTLHLQNNQL 209
           +  + +     +AF +L  L+ ++L+ NNL+  LP      L  L  +HL +N  
Sbjct: 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 83.5 bits (207), Expect = 8e-18
 Identities = 40/181 (22%), Positives = 73/181 (40%), Gaps = 32/181 (17%)

Query: 507 YTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR 565
           +   F +  LIG+G  G V++A+   DGK   +K++         +    E V  + ++ 
Sbjct: 9   FGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKY-----NNEKAERE-VKALAKLD 62

Query: 566 HANIVELKGY---------------CAEHGQRLLIY-EYCSNGTLQDML--HSDDELKNN 607
           H NIV   G                     + L I  E+C  GTL+  +     ++L   
Sbjct: 63  HVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKV 122

Query: 608 LSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG 667
           L+     ++       ++Y+H      +++R+ K +NI L D   V + D GL   + + 
Sbjct: 123 LALELFEQITK----GVDYIHS---KKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKND 175

Query: 668 S 668
            
Sbjct: 176 G 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 84.5 bits (209), Expect = 8e-18
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 11/119 (9%)

Query: 118 SIPSILPVTMQNFFLSDNQFSGSIPS--SLATLTLLTDMSLNNNLLSGEIP-DAFQSLTG 174
           ++P  LP       LS N  S  + +  +   LT L  + L++N L+  I  +AF  +  
Sbjct: 32  NVPQSLPSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPN 89

Query: 175 LINLDLSSNNLSGELPP-SLENLSQLTTLHLQNNQLSGTL--DVLQDLP-LRDLNIENN 229
           L  LDLSSN+L   L      +L  L  L L NN +   +  +  +D+  L+ L +  N
Sbjct: 90  LRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQN 146

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 79.9 bits (197), Expect = 3e-16
 Identities = 38/170 (22%), Positives = 65/170 (38%), Gaps = 19/170 (11%)

Query: 100 GAFSSIRVIDLSNNHIGGSIPSILPVTMQN---FFLSDNQFSGSIPS-SLATLTLLTDMS 155
              S   ++DLS+N++        P  + N     LS N  +  I S +   +  L  + 
Sbjct: 36  SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLD 94

Query: 156 LNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPP-SLENLSQLTTLHLQNNQLS---- 210
           L++N L       F  L  L  L L +N++   +   + E+++QL  L+L  NQ+S    
Sbjct: 95  LSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPV 153

Query: 211 GTLDVLQDLP-LRDLNIENNLFSGPIPEKM------LQIPNFRKDGNPFN 253
             +     LP L  L++ +N     +P                   NP  
Sbjct: 154 ELIKDGNKLPKLMLLDLSSNKLKK-LPLTDLQKLPAWVKNGLYLHNNPLE 202

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 85.1 bits (211), Expect = 9e-18
 Identities = 32/161 (19%), Positives = 65/161 (40%), Gaps = 15/161 (9%)

Query: 99  LGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNN 158
           L    S+   ++S N +  ++    P+ ++    S N  +  +   +     LT + L +
Sbjct: 182 LSLIPSLFHANVSYNLLS-TLAI--PIAVEELDASHNSIN-VVRGPV--NVELTILKLQH 235

Query: 159 NLLSGEIPDAFQSLTGLINLDLSSNNLSGELPP-SLENLSQLTTLHLQNNQLSGTLDVLQ 217
           N L+ +      +  GL+ +DLS N L  ++       + +L  L++ NN+L       Q
Sbjct: 236 NNLT-DTA-WLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQ 292

Query: 218 DLP-LRDLNIENNLFSGPIPEKMLQIPNFRK---DGNPFNS 254
            +P L+ L++ +N     +     Q         D N   +
Sbjct: 293 PIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVT 332

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 83.2 bits (206), Expect = 3e-17
 Identities = 32/166 (19%), Positives = 59/166 (35%), Gaps = 7/166 (4%)

Query: 90  NLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLT 149
           N+   L   L    ++  +D S+N I   +   + V +    L  N  +      L    
Sbjct: 192 NVSYNLLSTLAIPIAVEELDASHNSI-NVVRGPVNVELTILKLQHNNLT-DTA-WLLNYP 248

Query: 150 LLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQL 209
            L ++ L+ N L   +   F  +  L  L +S+N L   L    + +  L  L L +N L
Sbjct: 249 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL 307

Query: 210 SGTLDVLQDLP-LRDLNIENNLFSGPIPEKMLQ-IPNFRKDGNPFN 253
                       L +L +++N     +       + N     N ++
Sbjct: 308 LHVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 79.7 bits (197), Expect = 4e-16
 Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 11/140 (7%)

Query: 99  LGAFSSIRVIDLSNNHIGGSIPSILPVTMQN---FFLSDNQFSGSIPSSLATLTLLTDMS 155
           L +F  + +++L++  I   I +            ++  N      P     + LLT + 
Sbjct: 65  LDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123

Query: 156 LNNNLLSGEIP-DAFQSLTGLINLDLSSNNLSGELPPS-LENLSQLTTLHLQNNQLSG-T 212
           L  N LS  +P   F +   L  L +S+NNL   +     +  + L  L L +N+L+   
Sbjct: 124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVD 181

Query: 213 LDVLQDLPLRDLNIENNLFS 232
           L ++    L   N+  NL S
Sbjct: 182 LSLIPS--LFHANVSYNLLS 199

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 76.6 bits (189), Expect = 5e-15
 Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 15/144 (10%)

Query: 103 SSIRVIDLSNNHIGGSIPSILPVTMQN---FFLSDNQFSGSIPSSL-ATLTLLTDMSLNN 158
            +I+ + +  N I   +P  +   +       L  N  S S+P  +      LT +S++N
Sbjct: 93  HTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSN 150

Query: 159 NLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQD 218
           N L     D FQ+ T L NL LSSN L+  +  S   +  L   ++  N LS     L  
Sbjct: 151 NNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLS--LIPSLFHANVSYNLLS----TLAI 203

Query: 219 LP-LRDLNIENNLFSGPIPEKMLQ 241
              + +L+  +N  +  +   +  
Sbjct: 204 PIAVEELDASHNSINV-VRGPVNV 226

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 71.6 bits (176), Expect = 2e-13
 Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 9/139 (6%)

Query: 108 IDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIP- 166
           ID+    +      I     +     ++       + L +   +  ++LN+  +  EI  
Sbjct: 28  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDT 86

Query: 167 DAFQSLTGLINLDLSSNNLSGELPPS-LENLSQLTTLHLQNNQLSGTL--DVLQDLP-LR 222
            AF     +  L +  N +   LPP   +N+  LT L L+ N LS +L   +  + P L 
Sbjct: 87  YAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLT 144

Query: 223 DLNIENNLFSGPIPEKMLQ 241
            L++ NN     I +   Q
Sbjct: 145 TLSMSNNNLER-IEDDTFQ 162

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 69.7 bits (171), Expect = 8e-13
 Identities = 22/130 (16%), Positives = 43/130 (33%), Gaps = 9/130 (6%)

Query: 118 SIPSILPV--TMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGL 175
            I S L       +  +              TL     ++  N+ +         S   +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 176 INLDLSSNNLSGELPP-SLENLSQLTTLHLQNNQLSGTL--DVLQDLP-LRDLNIENNLF 231
             L+L+   +  E+   +      +  L++  N +   L   V Q++P L  L +E N  
Sbjct: 72  ELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL 129

Query: 232 SGPIPEKMLQ 241
           S  +P  +  
Sbjct: 130 SS-LPRGIFH 138

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 16/111 (14%), Positives = 39/111 (35%), Gaps = 5/111 (4%)

Query: 134 DNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPS- 192
                  I S+L    +  D+ ++             +L     +   ++ +  +LP + 
Sbjct: 6   RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAAL 64

Query: 193 LENLSQLTTLHLQNNQLSG-TLDVLQDLP-LRDLNIENNLFSGPIPEKMLQ 241
           L++  Q+  L+L + Q+             ++ L +  N     +P  + Q
Sbjct: 65  LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQ 114

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 16/110 (14%), Positives = 37/110 (33%), Gaps = 9/110 (8%)

Query: 103 SSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNL 160
             +  + +SNN +  ++        T++   LS N     +  +      L ++ L++N 
Sbjct: 272 QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 329

Query: 161 LSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLS 210
           +   +     +   L NL LS N+              +    + +    
Sbjct: 330 IV-TLK--LSTHHTLKNLTLSHNDWDCN--SLRALFRNVARPAVDDADQH 374

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 84.9 bits (210), Expect = 1e-17
 Identities = 38/227 (16%), Positives = 78/227 (34%), Gaps = 23/227 (10%)

Query: 448 PPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTTARSFTIASLQQY 507
                P               + +  P +  +     +S+         R ++I      
Sbjct: 7   SSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKASSSANECISVKGRIYSI------ 60

Query: 508 TNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRH- 566
                    IG+G    V++      ++ A+K ++   +  Q  D +   +  +++++  
Sbjct: 61  ------LKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQH 114

Query: 567 -ANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALE 625
              I+ L  Y     Q + +   C N  L   L      K ++    R         A+ 
Sbjct: 115 SDKIIRLYDYE-ITDQYIYMVMECGNIDLNSWLKK----KKSIDPWERKSYWKNMLEAVH 169

Query: 626 YLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQV 672
            +H+     IVH + K AN L+ D + + + D G+A  +   + S V
Sbjct: 170 TIHQHG---IVHSDLKPANFLIVDGM-LKLIDFGIANQMQPDTTSVV 212

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 84.3 bits (209), Expect = 1e-17
 Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 29/168 (17%)

Query: 517 IGAGMLGSVYRAQLPDGKLL--------AVKKLDKRASSQQKDDEFL---ELVNNIDRIR 565
           +G G  G V  A+               AVK L   A+ +   D  +   E++  I +  
Sbjct: 89  LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD-LVSEMEMMKMIGK-- 145

Query: 566 HANIVELKGYCAEHGQRLLIYEYCSNGTLQDML------------HSDDELKNNLSWNTR 613
           H NI+ L G C + G   +I EY S G L++ L              +   +  +++   
Sbjct: 146 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 205

Query: 614 IRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           +      AR +EYL        +HR+  + N+L+ ++  + ++D GLA
Sbjct: 206 VSCTYQLARGMEYLASQK---CIHRDLAARNVLVTENNVMKIADFGLA 250

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 83.2 bits (206), Expect = 1e-17
 Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 8/124 (6%)

Query: 109 DLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDA 168
           +    ++  ++P  LP       LS+N       ++L   T LT ++L+   L+ ++   
Sbjct: 16  NCDKRNLT-ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-V 72

Query: 169 FQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTL--DVLQDLP-LRDLN 225
             +L  L  LDLS N L   LP   + L  LT L +  N+L+ +L    L+ L  L++L 
Sbjct: 73  DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELY 130

Query: 226 IENN 229
           ++ N
Sbjct: 131 LKGN 134

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 77.5 bits (191), Expect = 1e-15
 Identities = 37/140 (26%), Positives = 54/140 (38%), Gaps = 11/140 (7%)

Query: 98  NLGAFS---SIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPSSL-ATLTLL 151
            L        +  +DLS+N +  S+P +      +    +S N+ + S+P      L  L
Sbjct: 69  KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGEL 126

Query: 152 TDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSL-ENLSQLTTLHLQNNQLS 210
            ++ L  N L    P        L  L L++NNL+ ELP  L   L  L TL LQ N L 
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY 185

Query: 211 GTLDVLQDLP-LRDLNIENN 229
                      L    +  N
Sbjct: 186 TIPKGFFGSHLLPFAFLHGN 205

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 83.6 bits (207), Expect = 1e-17
 Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 24/178 (13%)

Query: 501 IASLQQYTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVN 559
           +++L+     F    L+G G  G VY+ + +  G+L A+K +D         DE  E+  
Sbjct: 16  LSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMD------VTGDEEEEIKQ 69

Query: 560 NI----DRIRHANIVE-----LKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLS 609
            I        H NI       +K        +L L+ E+C  G++ D++ +         
Sbjct: 70  EINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEE 129

Query: 610 WNTRI-RMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS 666
           W   I R  L   R L +LH+     ++HR+ K  N+LL ++  V + D G++  +  
Sbjct: 130 WIAYICREIL---RGLSHLHQHK---VIHRDIKGQNVLLTENAEVKLVDFGVSAQLDR 181

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 84.3 bits (209), Expect = 1e-17
 Identities = 44/168 (26%), Positives = 70/168 (41%), Gaps = 29/168 (17%)

Query: 517 IGAGMLGSVYRAQLPDGKLL--------AVKKLDKRASSQQKDDEFL---ELVNNIDRIR 565
           +G G  G V  A+               AVK L   A+ +   D  +   E++  I +  
Sbjct: 77  LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSD-LISEMEMMKMIGK-- 133

Query: 566 HANIVELKGYCAEHGQRLLIYEYCSNGTLQDML------------HSDDELKNNLSWNTR 613
           H NI+ L G C + G   +I EY S G L++ L            +     +  LS    
Sbjct: 134 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDL 193

Query: 614 IRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           +  A   AR +EYL        +HR+  + N+L+ +D  + ++D GLA
Sbjct: 194 VSCAYQVARGMEYLASKK---CIHRDLAARNVLVTEDNVMKIADFGLA 238

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 83.1 bits (206), Expect = 1e-17
 Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 30/171 (17%)

Query: 517 IGAGMLGSVYRAQLPDGK------LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           +G G  G V +A     K       +AVK L + AS  +  D  L   N + ++ H +++
Sbjct: 31  LGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRD-LLSEFNVLKQVNHPHVI 89

Query: 571 ELKGYCAEHGQRLLIYEYCSNGTLQDML--------------------HSDDELKNNLSW 610
           +L G C++ G  LLI EY   G+L+  L                      D   +  L+ 
Sbjct: 90  KLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTM 149

Query: 611 NTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
              I  A   ++ ++YL E+    +VHR+  + NIL+ +   + +SD GL+
Sbjct: 150 GDLISFAWQISQGMQYLAEMK---LVHRDLAARNILVAEGRKMKISDFGLS 197

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 82.7 bits (205), Expect = 2e-17
 Identities = 42/176 (23%), Positives = 67/176 (38%), Gaps = 29/176 (16%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGK------LLAVKKLDKRASSQQKDDEFL---ELVN 559
           N  S    +GAG  G V  A             +AVK L   A   +++   +   ++++
Sbjct: 23  NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREA-LMSELKVLS 81

Query: 560 NIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDML--------------HSDDELK 605
            +    H NIV L G C   G  L+I EYC  G L + L                 ++ +
Sbjct: 82  YLGN--HMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDE 139

Query: 606 NNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
             L     +  +   A+ + +L        +HR+  + NILL       + D GLA
Sbjct: 140 LALDLEDLLSFSYQVAKGMAFLASKN---CIHRDLAARNILLTHGRITKICDFGLA 192

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 82.7 bits (205), Expect = 3e-17
 Identities = 44/173 (25%), Positives = 72/173 (41%), Gaps = 34/173 (19%)

Query: 517 IGAGMLGSVYRAQLPDGK------LLAVKKLDKRASSQQKDDEFL---ELVNNIDRIRHA 567
           +G+G  G V  A             +AVK L ++A S +++   +   +++  +    H 
Sbjct: 53  LGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREA-LMSELKMMTQLGS--HE 109

Query: 568 NIVELKGYCAEHGQRLLIYEYCSNGTLQDML-------------------HSDDELKNNL 608
           NIV L G C   G   LI+EYC  G L + L                     ++E  N L
Sbjct: 110 NIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVL 169

Query: 609 SWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           ++   +  A   A+ +E+L        VHR+  + N+L+     V + D GLA
Sbjct: 170 TFEDLLCFAYQVAKGMEFLEFKS---CVHRDLAARNVLVTHGKVVKICDFGLA 219

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 82.4 bits (204), Expect = 3e-17
 Identities = 39/233 (16%), Positives = 73/233 (31%), Gaps = 51/233 (21%)

Query: 448 PPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTTARSFTIASLQQY 507
           P P  P     P    P           +P     V    ++ + +   R          
Sbjct: 2   PAPADPGKAGVPGVAAPGAPAAAPPAKEIPE----VLVDPRSRRRYVRGR---------- 47

Query: 508 TNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNID---R 563
                    +G G     +        ++ A K + K    +    E  ++   I     
Sbjct: 48  --------FLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQRE--KMSMEISIHRS 97

Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR- 622
           + H ++V   G+  ++    ++ E C   +L ++               R  +    AR 
Sbjct: 98  LAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKR------------RKALTEPEARY 145

Query: 623 -------ALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
                    +YLH      ++HR+ K  N+ L++DL V + D GLA  +    
Sbjct: 146 YLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDG 195

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 82.0 bits (203), Expect = 4e-17
 Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 11/169 (6%)

Query: 507 YTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI- 564
           +  SF + + +G G  G V++ +   DG+L AVK+        +     L  V + +++ 
Sbjct: 55  FQQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVG 114

Query: 565 RHANIVELKGYCAEHGQRLLIY-EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
           +H   V L+    E G  L +  E C   +LQ           +L              A
Sbjct: 115 QHPCCVRLEQ-AWEEGGILYLQTELCG-PSLQQHCE---AWGASLPEAQVWGYLRDTLLA 169

Query: 624 LEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQV 672
           L +LH      +VH + K ANI L       + D GL   + +    +V
Sbjct: 170 LAHLHS---QGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEV 215

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 82.3 bits (204), Expect = 4e-17
 Identities = 33/171 (19%), Positives = 60/171 (35%), Gaps = 29/171 (16%)

Query: 94  ELGENLGAFSSIRVIDLSNN--------HIGGSIPSILPVTMQN---FFLSDNQFSGSIP 142
            L  ++ + + +R + +            +  +  S     + N     L       S+P
Sbjct: 141 ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLP 199

Query: 143 SSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTL 202
           +S+A L  L  + + N+ LS  +  A   L  L  LDL         PP     + L  L
Sbjct: 200 ASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258

Query: 203 HLQN-NQLSGTLDVLQDLP--------LRDLNIENNLFSGPIPEKMLQIPN 244
            L++ + L         LP        L  L++   +    +P  + Q+P 
Sbjct: 259 ILKDCSNLL-------TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 77.3 bits (191), Expect = 2e-15
 Identities = 25/158 (15%), Positives = 55/158 (34%), Gaps = 14/158 (8%)

Query: 94  ELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTM------QNFFLSDNQFSGSIPSSLAT 147
           +         +++ + L    I       LP ++      ++  + ++  S ++  ++  
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGI-----RSLPASIANLQNLKSLKIRNSPLS-ALGPAIHH 227

Query: 148 LTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNN 207
           L  L ++ L         P  F     L  L L   +    LP  +  L+QL  L L+  
Sbjct: 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287

Query: 208 QLSGTL-DVLQDLP-LRDLNIENNLFSGPIPEKMLQIP 243
                L  ++  LP    + +  +L +     + +  P
Sbjct: 288 VNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 76.5 bits (189), Expect = 2e-15
 Identities = 28/157 (17%), Positives = 53/157 (33%), Gaps = 31/157 (19%)

Query: 94  ELGENLGAFSSI--RVIDLSNNHIGGSIPSIL--PVTMQNFFLSDNQFSGSIPSSLATLT 149
              + L   +      ++L +  +    P        +Q+  +        +P ++    
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFA 127

Query: 150 LLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSL---------ENLSQLT 200
            L  ++L  N L   +P +  SL  L  L + +     ELP  L         + L  L 
Sbjct: 128 GLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ 186

Query: 201 TLHLQNNQLSGTLDVLQDLP--------LRDLNIENN 229
           +L L+          ++ LP        L+ L I N+
Sbjct: 187 SLRLEWTG-------IRSLPASIANLQNLKSLKIRNS 216

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 12/94 (12%), Positives = 24/94 (25%), Gaps = 7/94 (7%)

Query: 139 GSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQ 198
           GS        +   ++    +       D         N D +  + +        N + 
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNN 57

Query: 199 LTTLHLQNNQLSGTLDVLQDLP---LRDLNIENN 229
                     L  T D+L+D        L + + 
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSV 91

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 84.2 bits (208), Expect = 4e-17
 Identities = 30/148 (20%), Positives = 62/148 (41%), Gaps = 12/148 (8%)

Query: 99  LGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNN 158
           L    S+   ++S N +  ++    P+ ++    S N  +  +   +     LT + L +
Sbjct: 188 LSLIPSLFHANVSYNLLS-TLAI--PIAVEELDASHNSIN-VVRGPV--NVELTILKLQH 241

Query: 159 NLLSGEIPDAFQSLTGLINLDLSSNNLSGELPP-SLENLSQLTTLHLQNNQLSGTLDVLQ 217
           N L+ +      +  GL+ +DLS N L  ++       + +L  L++ NN+L       Q
Sbjct: 242 NNLT-DTA-WLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQ 298

Query: 218 DLP-LRDLNIENNLFSGPIPEKMLQIPN 244
            +P L+ L++ +N     +     Q   
Sbjct: 299 PIPTLKVLDLSHNHLLH-VERNQPQFDR 325

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 81.9 bits (202), Expect = 2e-16
 Identities = 32/166 (19%), Positives = 59/166 (35%), Gaps = 7/166 (4%)

Query: 90  NLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLT 149
           N+   L   L    ++  +D S+N I   +   + V +    L  N  +      L    
Sbjct: 198 NVSYNLLSTLAIPIAVEELDASHNSI-NVVRGPVNVELTILKLQHNNLT-DTA-WLLNYP 254

Query: 150 LLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQL 209
            L ++ L+ N L   +   F  +  L  L +S+N L   L    + +  L  L L +N L
Sbjct: 255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL 313

Query: 210 SGTLDVLQDLP-LRDLNIENNLFSGPIPEKMLQ-IPNFRKDGNPFN 253
                       L +L +++N     +       + N     N ++
Sbjct: 314 LHVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 78.8 bits (194), Expect = 2e-15
 Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 11/140 (7%)

Query: 99  LGAFSSIRVIDLSNNHIGGSIPSILPVTMQN---FFLSDNQFSGSIPSSLATLTLLTDMS 155
           L +F  + +++L++  I   I +            ++  N      P     + LLT + 
Sbjct: 71  LDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129

Query: 156 LNNNLLSGEIP-DAFQSLTGLINLDLSSNNLSGELPPS-LENLSQLTTLHLQNNQLSGTL 213
           L  N LS  +P   F +   L  L +S+NNL   +     +  + L  L L +N+L+  +
Sbjct: 130 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HV 186

Query: 214 DVLQDLP-LRDLNIENNLFS 232
           D L  +P L   N+  NL S
Sbjct: 187 D-LSLIPSLFHANVSYNLLS 205

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 75.7 bits (186), Expect = 2e-14
 Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 17/145 (11%)

Query: 103 SSIRVIDLSNNHIGGSIPSILPVTMQN---FFLSDNQFSGSIPSSL-ATLTLLTDMSLNN 158
            +I+ + +  N I   +P  +   +       L  N  S S+P  +      LT +S++N
Sbjct: 99  HTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSN 156

Query: 159 NLLSGEIPD-AFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQ 217
           N L   I D  FQ+ T L NL LSSN L+  +  SL  +  L   ++  N LS     L 
Sbjct: 157 NNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSL--IPSLFHANVSYNLLS----TLA 208

Query: 218 DLP-LRDLNIENNLFSGPIPEKMLQ 241
               + +L+  +N  +  +   +  
Sbjct: 209 IPIAVEELDASHNSINV-VRGPVNV 232

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 73.4 bits (180), Expect = 1e-13
 Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 11/140 (7%)

Query: 108 IDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSS-LATLTLLTDMSLNNNLLSGEIP 166
           ID+    +      I     +     ++     +P++ L +   +  ++LN+  +  EI 
Sbjct: 34  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EID 91

Query: 167 -DAFQSLTGLINLDLSSNNLSGELPPSL-ENLSQLTTLHLQNNQLSGTLD--VLQDLP-L 221
             AF     +  L +  N +   LPP + +N+  LT L L+ N LS +L   +  + P L
Sbjct: 92  TYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKL 149

Query: 222 RDLNIENNLFSGPIPEKMLQ 241
             L++ NN     I +   Q
Sbjct: 150 TTLSMSNNNLER-IEDDTFQ 168

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 68.4 bits (167), Expect = 4e-12
 Identities = 22/130 (16%), Positives = 47/130 (36%), Gaps = 9/130 (6%)

Query: 118 SIPSILPVTMQNFFLSDNQFSGSIPSSLATLTL--LTDMSLNNNLLSGEIPDAFQSLTGL 175
            I S L      + +  +  +  +      +TL     ++  N+ +         S   +
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 176 INLDLSSNNLSGELPP-SLENLSQLTTLHLQNNQLSGTL--DVLQDLP-LRDLNIENNLF 231
             L+L+   +  E+   +      +  L++  N +   L   V Q++P L  L +E N  
Sbjct: 78  ELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL 135

Query: 232 SGPIPEKMLQ 241
           S  +P  +  
Sbjct: 136 SS-LPRGIFH 144

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 62.3 bits (151), Expect = 3e-10
 Identities = 17/118 (14%), Positives = 43/118 (36%), Gaps = 8/118 (6%)

Query: 128 QNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSG 187
            N      ++   I S+L    +  D+ ++             +L     +   ++ +  
Sbjct: 7   YNVKPRQPEYK-CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR- 64

Query: 188 ELPPS-LENLSQLTTLHLQNNQLSGTL--DVLQDLP-LRDLNIENNLFSGPIPEKMLQ 241
           +LP + L++  Q+  L+L + Q+   +          ++ L +  N     +P  + Q
Sbjct: 65  KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQ 120

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.2 bits (130), Expect = 1e-07
 Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 8/108 (7%)

Query: 103 SSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNL 160
             +  + +SNN +  ++        T++   LS N     +  +      L ++ L++N 
Sbjct: 278 QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 335

Query: 161 LSGEIPDAFQSLTGLINLDLSSNNLSG-ELPPSLENLSQLTTLHLQNN 207
           +   +     +   L NL LS N+     L     N+++        +
Sbjct: 336 IV-TLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 380

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 83.6 bits (207), Expect = 4e-17
 Identities = 37/168 (22%), Positives = 66/168 (39%), Gaps = 18/168 (10%)

Query: 100 GAFS---SIRVIDLSNNHIGGSIPSILPVTMQN---FFLSDNQFSGSIPSSLATLTLLTD 153
            A S    + V+ L + +I  +I       +       +S   +  ++  +      LT 
Sbjct: 170 EALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTS 228

Query: 154 MSLNNNLLSGEIP-DAFQSLTGLINLDLSSNNLSGELPP-SLENLSQLTTLHLQNNQLSG 211
           +S+ +  L+  +P  A + L  L  L+LS N +S  +    L  L +L  + L   QL+ 
Sbjct: 229 LSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAV 286

Query: 212 -TLDVLQDLP-LRDLNIENNLFSGPIPEKMLQ-IPNFRK---DGNPFN 253
                 + L  LR LN+  N  +  + E +   + N      D NP  
Sbjct: 287 VEPYAFRGLNYLRVLNVSGNQLTT-LEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 80.5 bits (199), Expect = 4e-16
 Identities = 34/140 (24%), Positives = 57/140 (40%), Gaps = 10/140 (7%)

Query: 100 GAFSSIRVIDLSNNHIGGSIPSILPVTMQN---FFLSDNQFSGSIPSSLATLTLLTDMSL 156
           G  +  R++DL  N I  ++      +  +     L++N  S   P +   L  L  + L
Sbjct: 29  GIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87

Query: 157 NNNLLSGEIP-DAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTL-- 213
            +N L   IP   F  L+ L  LD+S N +   L    ++L  L +L + +N L   +  
Sbjct: 88  RSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISH 145

Query: 214 DVLQDLP-LRDLNIENNLFS 232
                L  L  L +E    +
Sbjct: 146 RAFSGLNSLEQLTLEKCNLT 165

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 76.3 bits (188), Expect = 9e-15
 Identities = 32/152 (21%), Positives = 64/152 (42%), Gaps = 14/152 (9%)

Query: 100 GAF---SSIRVIDLSNNHIGGSIPSI----LPVTMQNFFLSDNQFSGSIPS-SLATLTLL 151
             F    +++ +++ +N +   I       L  +++   L     + SIP+ +L+ L  L
Sbjct: 122 YMFQDLYNLKSLEVGDNDLV-YISHRAFSGLN-SLEQLTLEKCNLT-SIPTEALSHLHGL 178

Query: 152 TDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSG 211
             + L +  ++     +F+ L  L  L++S       + P+      LT+L + +  L+ 
Sbjct: 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA 238

Query: 212 -TLDVLQDLP-LRDLNIENNLFSGPIPEKMLQ 241
                ++ L  LR LN+  N  S  I   ML 
Sbjct: 239 VPYLAVRHLVYLRFLNLSYNPIST-IEGSMLH 269

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 70.1 bits (172), Expect = 9e-13
 Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 6/129 (4%)

Query: 86  LNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQN---FFLSDNQFSGSIP 142
           ++       +  N     ++  + +++ ++  ++P +    +       LS N  S    
Sbjct: 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNL-TAVPYLAVRHLVYLRFLNLSYNPISTIEG 265

Query: 143 SSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSL-ENLSQLTT 201
           S L  L  L ++ L    L+   P AF+ L  L  L++S N L+  L  S+  ++  L T
Sbjct: 266 SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLET 324

Query: 202 LHLQNNQLS 210
           L L +N L+
Sbjct: 325 LILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 67.8 bits (166), Expect = 4e-12
 Identities = 31/143 (21%), Positives = 51/143 (35%), Gaps = 30/143 (20%)

Query: 102 FSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLL 161
            +  R +         ++P  +P   +   L  N+   ++                    
Sbjct: 10  SAQDRAVLCHRKRFV-AVPEGIPTETRLLDLGKNRIK-TLN------------------- 48

Query: 162 SGEIPDAFQSLTGLINLDLSSNNLSGELPP-SLENLSQLTTLHLQNNQLSG-TLDVLQDL 219
                D F S   L  L+L+ N +S  + P +  NL  L TL L++N+L    L V   L
Sbjct: 49  ----QDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL 103

Query: 220 P-LRDLNIENNLFSGPIPEKMLQ 241
             L  L+I  N     + + M Q
Sbjct: 104 SNLTKLDISENKIVI-LLDYMFQ 125

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 82.0 bits (203), Expect = 5e-17
 Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 30/171 (17%)

Query: 517 IGAGMLGSVYRAQLPDGK------LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIV 570
           IG G  G V++A+ P         ++AVK L + AS+  + D F      +    + NIV
Sbjct: 55  IGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQAD-FQREAALMAEFDNPNIV 113

Query: 571 ELKGYCAEHGQRLLIYEYCSNGTLQDMLHS--------------------DDELKNNLSW 610
           +L G CA      L++EY + G L + L S                           LS 
Sbjct: 114 KLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSC 173

Query: 611 NTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
             ++ +A   A  + YL E      VHR+  + N L+ +++ V ++D GL+
Sbjct: 174 AEQLCIARQVAAGMAYLSERK---FVHRDLATRNCLVGENMVVKIADFGLS 221

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 82.1 bits (203), Expect = 6e-17
 Identities = 56/282 (19%), Positives = 88/282 (31%), Gaps = 39/282 (13%)

Query: 399 HRSEMRRMGAIPHAQNEQERNKQRMSTIPRRDDHEIDMSSLDMMMMPPPPPPPPPPPPPP 458
           H       G       E+ R ++ +  +P  +  +                     P   
Sbjct: 2   HHHHHHSSGVDNKFNKERRRARREIRHLPNLNREQ----------RRAFIRSLRDDPSQS 51

Query: 459 PPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTTARSFTIASLQQYTNSFSQENLIG 518
                                             +  A+ F     Q+Y         IG
Sbjct: 52  ANLLAEAKKLNDAQPKGTENLYFQSMGPEDELPDWAAAKEFY----QKYD--PKDV--IG 103

Query: 519 AGMLGSVYRA-QLPDGKLLAVKKLDKRA---SSQQKDDEFLELVNNIDRIR----HANIV 570
            G+   V R      G   AVK ++  A   S +Q ++           +R    H +I+
Sbjct: 104 RGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHII 163

Query: 571 ELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLS-WNTR--IRMALGAARALEYL 627
            L           L+++    G L D L      K  LS   TR  +R  L    A+ +L
Sbjct: 164 TLIDSYESSSFMFLVFDLMRKGELFDYLTE----KVALSEKETRSIMRSLLE---AVSFL 216

Query: 628 HEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSV 669
           H      IVHR+ K  NILLDD++ + +SD G +  +  G  
Sbjct: 217 HANN---IVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGEK 255

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 82.1 bits (203), Expect = 6e-17
 Identities = 42/143 (29%), Positives = 62/143 (43%), Gaps = 6/143 (4%)

Query: 103 SSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLS 162
               +   S+  +  SIPS L   +++  LS+N+ +    S L     L  + L +N ++
Sbjct: 31  DRNGICKGSSGSLN-SIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN 89

Query: 163 GEIPDAFQSLTGLINLDLSSNNLSGELPPSL-ENLSQLTTLHLQNNQLS--GTLDVLQDL 219
               D+F SL  L +LDLS N LS  L  S  + LS LT L+L  N     G   +   L
Sbjct: 90  TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL 148

Query: 220 P-LRDLNIENNLFSGPIPEKMLQ 241
             L+ L + N      I  K   
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFA 171

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 69.8 bits (171), Expect = 6e-13
 Identities = 28/149 (18%), Positives = 55/149 (36%), Gaps = 21/149 (14%)

Query: 100 GAF---SSIRVIDLSNNHI----GGSIPSILPVTMQNFFLSDNQFSGSIPS-SLATLTLL 151
             F   SS+  ++L  N        S+ S L         + + F+  I     A LT L
Sbjct: 118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFL 176

Query: 152 TDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPP-SLENLSQLTTLHLQNNQL- 209
            ++ ++ + L    P + +S+  + +L L        L    ++  S +  L L++  L 
Sbjct: 177 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLD 235

Query: 210 --------SGTLDVLQDLP-LRDLNIENN 229
                   +G  + L      R++ I + 
Sbjct: 236 TFHFSELSTGETNSLIKKFTFRNVKITDE 264

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 67.1 bits (164), Expect = 4e-12
 Identities = 21/148 (14%), Positives = 52/148 (35%), Gaps = 22/148 (14%)

Query: 100 GAFSSI---RVIDLSNNHIGGSIPSILPVTMQN---FFLSDNQFSGSIPS-SLATLTLLT 152
             F+ +     +++  + +  S       ++QN     L   Q    +    +   + + 
Sbjct: 168 KDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVE 225

Query: 153 DMSLNNNLLSG----EIP----DAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHL 204
            + L +  L      E+     ++        N+ ++  +L  ++   L  +S L  L  
Sbjct: 226 CLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEF 284

Query: 205 QNNQLSGTL--DVLQDLP-LRDLNIENN 229
             NQL  ++   +   L  L+ + +  N
Sbjct: 285 SRNQLK-SVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 51.7 bits (124), Expect = 4e-07
 Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 14/99 (14%)

Query: 100 GAF---SSIRVIDLSNNHIGGSIPSILP----------VTMQNFFLSDNQFSGSIPSSLA 146
                 SS+  ++L +  +     S L            T +N  ++D      +   L 
Sbjct: 216 IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLN 274

Query: 147 TLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNL 185
            ++ L ++  + N L       F  LT L  + L +N  
Sbjct: 275 QISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 80.0 bits (198), Expect = 9e-17
 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 5/124 (4%)

Query: 118 SIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLIN 177
            IP  LP + +N  LS N        S  +   L  + L+   +      A+QSL+ L  
Sbjct: 21  KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST 80

Query: 178 LDLSSNNLSGELPPSL-ENLSQLTTLHLQNNQLSG-TLDVLQDLP-LRDLNIENN-LFSG 233
           L L+ N +   L       LS L  L      L+      +  L  L++LN+ +N + S 
Sbjct: 81  LILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 234 PIPE 237
            +PE
Sbjct: 140 KLPE 143

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 71.5 bits (176), Expect = 6e-14
 Identities = 32/144 (22%), Positives = 67/144 (46%), Gaps = 17/144 (11%)

Query: 100 GAFS---SIRVIDLSNNHIGGSIPSILP---VTMQNFFLSDNQFSGSIPSSLAT-LTLLT 152
           GA+     +  + L+ N I  S+         ++Q     +   + S+ +     L  L 
Sbjct: 70  GAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLK 127

Query: 153 DMSLNNN-LLSGEIPDAFQSLTGLINLDLSSNNLSGELPP-SLENLSQLT----TLHLQN 206
           ++++ +N + S ++P+ F +LT L +LDLSSN +   +    L  L Q+     +L L  
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 207 NQLSG-TLDVLQDLPLRDLNIENN 229
           N ++       +++ L++L ++ N
Sbjct: 187 NPMNFIQPGAFKEIRLKELALDTN 210

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 69.6 bits (171), Expect = 3e-13
 Identities = 32/146 (21%), Positives = 59/146 (40%), Gaps = 21/146 (14%)

Query: 100 GAF---SSIRVIDLSNNHIGGSIPSIL---PVTMQNFFLSDNQFSGSIPSS--LATLTLL 151
           GAF   SS++ +     ++  S+ +       T++   ++ N    S       + LT L
Sbjct: 94  GAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNL 151

Query: 152 TDMSLNNNLLSGEIPDAFQSLTGL----INLDLSSNNLSGELPPSLENLSQLTTLHLQNN 207
             + L++N +        + L  +    ++LDLS N ++  + P      +L  L L  N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTN 210

Query: 208 QLS----GTLDVLQDLPLRDLNIENN 229
           QL     G  D L    L+ + +  N
Sbjct: 211 QLKSVPDGIFDRLTS--LQKIWLHTN 234

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 81.6 bits (201), Expect = 9e-17
 Identities = 36/240 (15%), Positives = 70/240 (29%), Gaps = 37/240 (15%)

Query: 447 PPPPPPPPPPPPPPPPPPPVVEKVIVK-------PIVPAEGTAVKTSTKTAKPFTTARSF 499
           P          P      P  +K+I K       P+     T                 F
Sbjct: 3   PQMSSLGTVDAPNFIVGNPWDDKLIFKLLSGLSKPVSSYPNT--FEWQCKLPAIKPKTEF 60

Query: 500 TIASLQQYTNSFSQENLIGAGMLGSVYRAQ------LPDGKLLAVKKLDKRASSQQKDDE 553
            + S           +L+G G    VY A         + +   +K      ++  +   
Sbjct: 61  QLGS-----KLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKP--ANPWEFYI 113

Query: 554 FLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNN-LSWNT 612
             +L+  +        ++           +L+ E  S GTL + ++         +    
Sbjct: 114 GTQLMERLKPSMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGL 173

Query: 613 RIRMALGAARALEYLHEICQPPIVHRNFKSANILL-----------DDDLAVSVSDCGLA 661
            I  A+     +E +H+     I+H + K  N +L           D    +++ D G +
Sbjct: 174 VISFAMRMLYMIEQVHDC---EIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQS 230

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 80.0 bits (198), Expect = 1e-16
 Identities = 37/157 (23%), Positives = 63/157 (40%), Gaps = 20/157 (12%)

Query: 513 QENLIGAGMLGSVYRA-QLPDGKLLAVK--KLDKRASSQQKDDEFLELVNNIDRIRHANI 569
              ++G G  G VY    L +   +A+K         SQ   +E    +     ++H NI
Sbjct: 26  DRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEE----IALHKHLKHKNI 81

Query: 570 VELKGYCAEHGQRLLIY-EYCSNGTLQDMLHSDD---ELKNNLSWNTRIRMALGAARALE 625
           V+  G        + I+ E    G+L  +L S     +           ++  G    L+
Sbjct: 82  VQYLG-SFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEG----LK 136

Query: 626 YLHEICQPPIVHRNFKSANILLDDDL-AVSVSDCGLA 661
           YLH+     IVHR+ K  N+L++     + +SD G +
Sbjct: 137 YLHDNQ---IVHRDIKGDNVLINTYSGVLKISDFGTS 170

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 82.6 bits (204), Expect = 1e-16
 Identities = 35/154 (22%), Positives = 68/154 (44%), Gaps = 15/154 (9%)

Query: 102 FSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLL 161
            S ++ + +S+N +  S+P+ LP  +   +  +N+ + S+P+  + L  L    ++ N L
Sbjct: 180 PSGLQELSVSDNQLA-SLPT-LPSELYKLWAYNNRLT-SLPALPSGLKELI---VSGNRL 233

Query: 162 SGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP- 220
           +  +P      + L  L +S N L+  LP     L    +L +  NQL+   + L  L  
Sbjct: 234 T-SLPV---LPSELKELMVSGNRLT-SLPMLPSGL---LSLSVYRNQLTRLPESLIHLSS 285

Query: 221 LRDLNIENNLFSGPIPEKMLQIPNFRKDGNPFNS 254
              +N+E N  S    + + +I +      P   
Sbjct: 286 ETTVNLEGNPLSERTLQALREITSAPGYSGPIIR 319

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 80.3 bits (198), Expect = 6e-16
 Identities = 35/184 (19%), Positives = 65/184 (35%), Gaps = 40/184 (21%)

Query: 103 SSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLS 162
           +   V+++  + +  ++P  LP  +    + DN  + S+P+    L  L    ++ N L+
Sbjct: 40  NGNAVLNVGESGL-TTLPDCLPAHITTLVIPDNNLT-SLPALPPELRTLE---VSGNQLT 94

Query: 163 GEIPDAFQSLTGLINLDLSSNNLSGELPPSLENL--------------SQLTTLHLQNNQ 208
             +P     L  L        +L   LP  L  L                L  L + +NQ
Sbjct: 95  -SLPVLPPGLLELSIFSNPLTHLP-ALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQ 152

Query: 209 LSG---------TLDV----LQDLP-----LRDLNIENNLFSGPIPEKMLQIPNFRKDGN 250
           L+           L      L  LP     L++L++ +N  +  +P    ++       N
Sbjct: 153 LASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNN 211

Query: 251 PFNS 254
              S
Sbjct: 212 RLTS 215

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 76.9 bits (189), Expect = 9e-15
 Identities = 45/190 (23%), Positives = 75/190 (39%), Gaps = 50/190 (26%)

Query: 103 SSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLS 162
           S +  + +  N +  S+P + P  +Q   +SDNQ + S+P+  + L  L      NN L+
Sbjct: 121 SGLCKLWIFGNQLT-SLPVLPP-GLQELSVSDNQLA-SLPALPSELCKLW---AYNNQLT 174

Query: 163 GEIPDAFQSLTGLINLDLSSNNLSGELPPSLENL-----------------SQLTTLHLQ 205
             +P      +GL  L +S N L+  LP     L                 S L  L + 
Sbjct: 175 -SLPM---LPSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVS 229

Query: 206 NNQLSG---------TLDV----LQDLP-----LRDLNIENNLFSGPIPEKMLQIPNFRK 247
            N+L+           L V    L  LP     L  L++  N  +  +PE ++ + +   
Sbjct: 230 GNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTR-LPESLIHLSSETT 288

Query: 248 ---DGNPFNS 254
              +GNP + 
Sbjct: 289 VNLEGNPLSE 298

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 73.8 bits (181), Expect = 8e-14
 Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 38/165 (23%)

Query: 94  ELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTD 153
            L         + +      H+       LP  +   ++  NQ + S+P     L  L+ 
Sbjct: 95  SLPVLPPGLLELSIFSNPLTHL-----PALPSGLCKLWIFGNQLT-SLPVLPPGLQELS- 147

Query: 154 MSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENL----------------- 196
             +++N L+  +P     L     L   +N L+  LP     L                 
Sbjct: 148 --VSDNQLA-SLPALPSELC---KLWAYNNQLT-SLPMLPSGLQELSVSDNQLASLPTLP 200

Query: 197 SQLTTLHLQNNQLSGTLDVLQDLP--LRDLNIENNLFSGPIPEKM 239
           S+L  L   NN+L+     L  LP  L++L +  N  +  +P   
Sbjct: 201 SELYKLWAYNNRLT----SLPALPSGLKELIVSGNRLTS-LPVLP 240

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 68.0 bits (166), Expect = 6e-12
 Identities = 30/137 (21%), Positives = 60/137 (43%), Gaps = 12/137 (8%)

Query: 103 SSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLS 162
           S ++ + +S N +  S+P  LP  ++   +S N+ + S+P   + L  L   S+  N L+
Sbjct: 221 SGLKELIVSGNRLT-SLPV-LPSELKELMVSGNRLT-SLPMLPSGLLSL---SVYRNQLT 274

Query: 163 GEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP-- 220
             +P++   L+    ++L  N LS E     + L ++T+    +  +          P  
Sbjct: 275 -RLPESLIHLSSETTVNLEGNPLS-ERTL--QALREITSAPGYSGPIIRFDMAGASAPRE 330

Query: 221 LRDLNIENNLFSGPIPE 237
            R L++    +  P  E
Sbjct: 331 TRALHLAAADWLVPARE 347

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.1 bits (135), Expect = 3e-08
 Identities = 28/150 (18%), Positives = 54/150 (36%), Gaps = 10/150 (6%)

Query: 103 SSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLS 162
           S ++ + +S N +  S+P +    + +  +  NQ +  +P SL  L+  T ++L  N LS
Sbjct: 241 SELKELMVSGNRLT-SLPMLPS-GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297

Query: 163 GEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLPLR 222
                A + +T   +    S  +            +   LHL            +  P  
Sbjct: 298 ERTLQALREIT---SAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPAD 354

Query: 223 DL----NIENNLFSGPIPEKMLQIPNFRKD 248
                   +N        +++ +  NF KD
Sbjct: 355 RWHMFGQEDNADAFSLFLDRLSETENFIKD 384

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 18/103 (17%)

Query: 157 NNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVL 216
               +  ++        G   L++  + L+  LP  L   + +TTL + +N L+      
Sbjct: 26  GRAAVVQKMRACL--NNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT------ 74

Query: 217 QDLP-----LRDLNIENNLFSGPIPEKMLQIPNFRKDGNPFNS 254
             LP     LR L +  N  +  +P     +       NP   
Sbjct: 75  -SLPALPPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPLTH 115

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 79.6 bits (197), Expect = 2e-16
 Identities = 33/169 (19%), Positives = 68/169 (40%), Gaps = 24/169 (14%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLL--------AVKKLDKRASSQQKDDEFLELVNN 560
                   +G G    +++    +             +K LDK   +  +   F E  + 
Sbjct: 8   EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSES--FFEAASM 65

Query: 561 IDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGA 620
           + ++ H ++V   G C    + +L+ E+   G+L   L  +   KN ++   ++ +A   
Sbjct: 66  MSKLSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKN---KNCINILWKLEVAKQL 122

Query: 621 ARALEYLHEICQPPIVHRNFKSANILLD--------DDLAVSVSDCGLA 661
           A A+ +L E     ++H N  + NILL         +   + +SD G++
Sbjct: 123 AAAMHFLEENT---LIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGIS 168

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 81.0 bits (200), Expect = 2e-16
 Identities = 40/171 (23%), Positives = 73/171 (42%), Gaps = 16/171 (9%)

Query: 510 SFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
           SF  ++++G G  G++    + D + +AVK++         D E ++L+   D   H N+
Sbjct: 25  SFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPE-CFSFADRE-VQLLRESD--EHPNV 80

Query: 570 VELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
           +       +   + +  E C+  TLQ+ +   D     L   T ++        L +LH 
Sbjct: 81  IRYFCTEKDRQFQYIAIELCA-ATLQEYVEQKDFAHLGLEPITLLQQTT---SGLAHLHS 136

Query: 630 ICQPPIVHRNFKSANILL-----DDDLAVSVSDCGLAPLISSGSVSQVSHN 675
           +    IVHR+ K  NIL+        +   +SD GL   ++ G  S    +
Sbjct: 137 LN---IVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRS 184

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 79.8 bits (197), Expect = 3e-16
 Identities = 32/170 (18%), Positives = 65/170 (38%), Gaps = 22/170 (12%)

Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEF--------LELVNNIDR----- 563
           +  G    +   +  D K  A+KK +K    +++D               ++        
Sbjct: 39  LNQGKFNKIILCE-KDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQII 97

Query: 564 --IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAA 621
             I++   +  +G    + +  +IYEY  N ++         L  N +    I++     
Sbjct: 98  TDIKNEYCLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCII 157

Query: 622 R----ALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG 667
           +    +  Y+H   +  I HR+ K +NIL+D +  V +SD G +  +   
Sbjct: 158 KSVLNSFSYIHN--EKNICHRDVKPSNILMDKNGRVKLSDFGESEYMVDK 205

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 78.9 bits (195), Expect = 3e-16
 Identities = 37/156 (23%), Positives = 73/156 (46%), Gaps = 17/156 (10%)

Query: 511 FSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNID---RIRH 566
           +     +G G  G VY+A+    G L A K ++      + ++E  + +  I+      H
Sbjct: 21  WEIVGELGDGAFGKVYKAKNKETGALAAAKVIET-----KSEEELEDYIVEIEILATCDH 75

Query: 567 ANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMAL-GAARALE 625
             IV+L G     G+  ++ E+C  G +  ++    EL   L+   +I++       AL 
Sbjct: 76  PYIVKLLGAYYHDGKLWIMIEFCPGGAVDAIM---LELDRGLT-EPQIQVVCRQMLEALN 131

Query: 626 YLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           +LH      I+HR+ K+ N+L+  +  + ++D G++
Sbjct: 132 FLHSK---RIIHRDLKAGNVLMTLEGDIRLADFGVS 164

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 76.2 bits (188), Expect = 4e-16
 Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 7/107 (6%)

Query: 118 SIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLIN 177
            +P  +P  +   +L  NQF+  +P  L+    LT + L+NN +S     +F ++T L+ 
Sbjct: 24  VLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT 82

Query: 178 LDLSSNNLSGELPPSL-ENLSQLTTLHLQNNQLS----GTLDVLQDL 219
           L LS N L   +PP   + L  L  L L  N +S    G  + L  L
Sbjct: 83  LILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSAL 128

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 79.4 bits (196), Expect = 4e-16
 Identities = 47/222 (21%), Positives = 84/222 (37%), Gaps = 35/222 (15%)

Query: 445 PPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTTARSFTIASL 504
                P            P P   +                    A          +   
Sbjct: 10  HDYDIPTTENLYFQGAMDPMPAGGR--------------------AGSLKDPDVAELFFK 49

Query: 505 QQYTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNID- 562
                 FS    IG G  G+VY A+ + + +++A+KK+    S +Q ++++ +++  +  
Sbjct: 50  DDPEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMS--YSGKQSNEKWQDIIKEVRF 107

Query: 563 --RIRHANIVELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALG 619
             ++RH N ++ +G C        L+ EYC  G+  D+L    +    +        AL 
Sbjct: 108 LQKLRHPNTIQYRG-CYLREHTAWLVMEYCL-GSASDLLEVHKKPLQEVEIAAVTHGAL- 164

Query: 620 AARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
             + L YLH      ++HR+ K+ NILL +   V + D G A
Sbjct: 165 --QGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSA 201

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 80.7 bits (199), Expect = 4e-16
 Identities = 27/158 (17%), Positives = 51/158 (32%), Gaps = 7/158 (4%)

Query: 107 VIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIP 166
           ++D S N +   +P  L        +S N  S    S + +L+ L  + +++N +     
Sbjct: 4   LVDRSKNGLI-HVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI 62

Query: 167 DAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLS--GTLDVLQDLP-LRD 223
             F+    L  LDLS N L  ++         L  L L  N            ++  L+ 
Sbjct: 63  SVFKFNQELEYLDLSHNKLV-KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKF 119

Query: 224 LNIENNLFSGPIPEKMLQIPNFRKDGNPFNSTVAPSRP 261
           L +            +  +   +       +      P
Sbjct: 120 LGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDP 157

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 68.0 bits (166), Expect = 4e-12
 Identities = 26/135 (19%), Positives = 54/135 (40%), Gaps = 10/135 (7%)

Query: 102 FSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIP---SSLATLTLLTDMSL 156
            S    +D SNN +  ++         ++   L  NQ    +         +  L  + +
Sbjct: 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDI 381

Query: 157 -NNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDV 215
             N++   E          L++L++SSN L+  +   L    ++  L L +N++      
Sbjct: 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSIPKQ 439

Query: 216 LQDLP-LRDLNIENN 229
           +  L  L++LN+ +N
Sbjct: 440 VVKLEALQELNVASN 454

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 61.0 bits (148), Expect = 6e-10
 Identities = 23/146 (15%), Positives = 54/146 (36%), Gaps = 11/146 (7%)

Query: 103 SSIRVIDLSNNHIGG----SIPSILPVTMQNFFLSD---NQFSGSIPSSLATLTLLTDMS 155
           +++    +SN  + G            +++   +     + F           + +   +
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306

Query: 156 LNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLS---GT 212
              +            ++  ++LD S+N L+  +  +  +L++L TL LQ NQL      
Sbjct: 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366

Query: 213 LDVLQDLP-LRDLNIENNLFSGPIPE 237
            ++   +  L+ L+I  N  S    +
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKK 392

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.8 bits (98), Expect = 7e-04
 Identities = 21/164 (12%), Positives = 47/164 (28%), Gaps = 19/164 (11%)

Query: 100 GAFS---SIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSL 156
             F     ++ + LS  H+  S    +     +  L     +         L      SL
Sbjct: 109 KEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESL 168

Query: 157 NNNLLSGEIPDAFQSLTGLINLDLSSNNLSGEL-----------PPSLENLSQLTTLHLQ 205
           +    + +       ++     +L  +N+   L              L+   +L+ L L 
Sbjct: 169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLN 228

Query: 206 NNQLSGT-----LDVLQDLPLRDLNIENNLFSGPIPEKMLQIPN 244
           N + +       L ++    +   +I N    G +  +      
Sbjct: 229 NIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG 272

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 78.0 bits (193), Expect = 5e-16
 Identities = 39/155 (25%), Positives = 63/155 (40%), Gaps = 21/155 (13%)

Query: 515 NLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDR-------IRH 566
             +G G  G+VY A+      +LA+K L K    +        + + + R       +RH
Sbjct: 15  RPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAG------VEHQLRREVEIQSHLRH 68

Query: 567 ANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEY 626
            NI+ L GY  +  +  LI EY   GT+   L    +     +           A AL Y
Sbjct: 69  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTA----TYITELANALSY 124

Query: 627 LHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
            H      ++HR+ K  N+LL     + ++D G +
Sbjct: 125 CHSKR---VIHRDIKPENLLLGSAGELKIADFGWS 156

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 78.5 bits (194), Expect = 5e-16
 Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 22/163 (13%)

Query: 511 FSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNID---RIRH 566
           F++   IG G  G V++       K++A+K +D     ++ +DE  ++   I    +   
Sbjct: 24  FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIID----LEEAEDEIEDIQQEITVLSQCDS 79

Query: 567 ANIVELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSD--DELKNNLSWNTRIRMALGAARA 623
             + +  G       +L +I EY   G+  D+L     DE +      T +R  L   + 
Sbjct: 80  PYVTKYYG-SYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIA----TILREIL---KG 131

Query: 624 LEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS 666
           L+YLH       +HR+ K+AN+LL +   V ++D G+A  ++ 
Sbjct: 132 LDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTD 171

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 78.5 bits (194), Expect = 5e-16
 Identities = 33/160 (20%), Positives = 65/160 (40%), Gaps = 11/160 (6%)

Query: 515 NLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRH--ANIVEL 572
             IG+G    V++      ++ A+K ++   +  Q  D +   +  +++++     I+ L
Sbjct: 34  KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRL 93

Query: 573 KGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQ 632
             Y        ++ E C N  L   L      K ++    R         A+  +H+   
Sbjct: 94  YDYEITDQYIYMVME-CGNIDLNSWLKK----KKSIDPWERKSYWKNMLEAVHTIHQHG- 147

Query: 633 PPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQV 672
             IVH + K AN L+ D + + + D G+A  +   + S V
Sbjct: 148 --IVHSDLKPANFLIVDGM-LKLIDFGIANQMQPDTTSVV 184

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 78.3 bits (193), Expect = 6e-16
 Identities = 40/176 (22%), Positives = 71/176 (40%), Gaps = 12/176 (6%)

Query: 501 IASLQQYTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVN 559
           + S     + +   +++G G   +V+R +    G L A+K  +  +  +  D +  E   
Sbjct: 1   MGSQSTSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMRE-FE 59

Query: 560 NIDRIRHANIVELKGYCAEHGQRL--LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMA 617
            + ++ H NIV+L     E   R   LI E+C  G+L  +L  +      L  +  + + 
Sbjct: 60  VLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLE-EPSNAYGLPESEFLIVL 118

Query: 618 LGAARALEYLHEICQPPIVHRNFKSANILL----DDDLAVSVSDCGLAPLISSGSV 669
                 + +L E     IVHRN K  NI+     D      ++D G A  +     
Sbjct: 119 RDVVGGMNHLRENG---IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQ 171

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 78.6 bits (194), Expect = 6e-16
 Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 19/160 (11%)

Query: 514 ENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR----HAN 568
             ++  G    VY AQ +  G+  A+K+L      + +      ++  +  ++    H N
Sbjct: 33  RRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNR-----AIIQEVCFMKKLSGHPN 87

Query: 569 IVELKGYCAEHGQR-------LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAA 621
           IV+     +   +         L+      G L + L    E +  LS +T +++     
Sbjct: 88  IVQFCSAASIGKEESDTGQAEFLLLTELCKGQLVEFLKKM-ESRGPLSCDTVLKIFYQTC 146

Query: 622 RALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           RA++++H   +PPI+HR+ K  N+LL +   + + D G A
Sbjct: 147 RAVQHMHR-QKPPIIHRDLKVENLLLSNQGTIKLCDFGSA 185

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 78.6 bits (194), Expect = 7e-16
 Identities = 34/164 (20%), Positives = 67/164 (40%), Gaps = 11/164 (6%)

Query: 511 FSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRH--AN 568
           +S    IG+G    V++      ++ A+K ++   +  Q  D +   +  +++++     
Sbjct: 11  YSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDK 70

Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           I+ L  Y        ++ E C N  L   L      K ++    R         A+  +H
Sbjct: 71  IIRLYDYEITDQYIYMVME-CGNIDLNSWLKK----KKSIDPWERKSYWKNMLEAVHTIH 125

Query: 629 EICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQV 672
           +     IVH + K AN L+ D + + + D G+A  +   + S V
Sbjct: 126 QHG---IVHSDLKPANFLIVDGM-LKLIDFGIANQMQPDTTSVV 165

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 79.7 bits (197), Expect = 8e-16
 Identities = 38/184 (20%), Positives = 70/184 (38%), Gaps = 19/184 (10%)

Query: 494 TTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDD 552
            T   F  +     +  + +   +G+G  G V            A+K + K + S   + 
Sbjct: 22  ATPGMFITSKKGHLSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNS 81

Query: 553 EFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNT 612
           + LE V  +  + H NI++L  +  +     L+ E    G L D +      +   +   
Sbjct: 82  KLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVMECYKGGELFDEIIH----RMKFN--- 134

Query: 613 RIRMALGAAR----ALEYLHEICQPPIVHRNFKSANILL---DDDLAVSVSDCGLAPLIS 665
               A    +     + YLH+     IVHR+ K  N+LL   + D  + + D GL+ +  
Sbjct: 135 -EVDAAVIIKQVLSGVTYLHKHN---IVHRDLKPENLLLESKEKDALIKIVDFGLSAVFE 190

Query: 666 SGSV 669
           +   
Sbjct: 191 NQKK 194

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 78.8 bits (194), Expect = 1e-15
 Identities = 41/193 (21%), Positives = 79/193 (40%), Gaps = 23/193 (11%)

Query: 501 IASLQQYTNSFSQENLIGAGM--LGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLEL 557
           ++S       +    +IG G   L +V  A+  P G+ + V++++        ++    L
Sbjct: 17  MSSFLPEGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRIN---LEACSNEMVTFL 73

Query: 558 VNNID---RIRHANIVELKGYCAEHGQRL-LIYEYCSNGTLQDML--HSDDELKNNLSWN 611
              +       H NIV  +         L ++  + + G+ +D++  H  D +       
Sbjct: 74  QGELHVSKLFNHPNIVPYRA-TFIADNELWVVTSFMAYGSAKDLICTHFMDGMNELA--- 129

Query: 612 TRIRMAL-GAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCG-LAPLISSGSV 669
             I   L G  +AL+Y+H +     VHR+ K+++IL+  D  V +S       +IS G  
Sbjct: 130 --IAYILQGVLKALDYIHHMGY---VHRSVKASHILISVDGKVYLSGLRSNLSMISHGQR 184

Query: 670 SQVSHNLTIMRAG 682
            +V H+       
Sbjct: 185 QRVVHDFPKYSVK 197

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 76.7 bits (189), Expect = 2e-15
 Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 97  ENLGAFSSIRVIDLSNNHIGGSIPSILPVT-MQNFFLSDNQFSGSIPSSLATLTLLTDMS 155
                   I  +      +  +I  +  +  +    L DNQ +  + + L  LT +T++ 
Sbjct: 35  VTQADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDNQIT-DL-APLKNLTKITELE 91

Query: 156 LNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDV 215
           L+ N L      A   L  +  LDL+S  ++ ++ P L  LS L  L+L  NQ++  +  
Sbjct: 92  LSGNPLK--NVSAIAGLQSIKTLDLTSTQIT-DVTP-LAGLSNLQVLYLDLNQIT-NISP 146

Query: 216 LQDLP-LRDLNIENN 229
           L  L  L+ L+I N 
Sbjct: 147 LAGLTNLQYLSIGNA 161

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 24/139 (17%), Positives = 54/139 (38%), Gaps = 6/139 (4%)

Query: 97  ENLGAFSSIRVIDLSNNHIGGSIPSILPVT-MQNFFLSDNQFSGSIPSSLATLTLLTDMS 155
             L   ++++ + + N  +   +  +  ++ +      DN+ S  I S LA+L  L ++ 
Sbjct: 145 SPLAGLTNLQYLSIGNAQVS-DLTPLANLSKLTTLKADDNKIS-DI-SPLASLPNLIEVH 201

Query: 156 LNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDV 215
           L NN +S   P    + + L  + L++  ++ +      NL     +   +        +
Sbjct: 202 LKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATI 259

Query: 216 LQDLPLRDLNIENNLFSGP 234
             +      N+  NL S  
Sbjct: 260 SDNGTYASPNLTWNLTSFI 278

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 156 LNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDV 215
                ++   PD   +L   I +    +N++     +  +L  +TTL      ++ T++ 
Sbjct: 4   TQPTAINVIFPDP--ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEG 58

Query: 216 LQDLP-LRDLNIENN 229
           +Q L  L  L +++N
Sbjct: 59  VQYLNNLIGLELKDN 73

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 21/119 (17%)

Query: 97  ENLGAFSSIRVIDLSNNHIGGSIPSILPVT-MQNFFLSDNQFSGSIPSSLATLTLLTDMS 155
             L   S +  +   +N I   I  +  +  +    L +NQ S  + S LA  + L  ++
Sbjct: 167 TPLANLSKLTTLKADDNKIS-DISPLASLPNLIEVHLKNNQIS-DV-SPLANTSNLFIVT 223

Query: 156 LNNNLLSGEIPDAFQSLTGLI-----------------NLDLSSNNLSGELPPSLENLS 197
           L N  ++ +      +L                     N   +S NL+  L   + N+S
Sbjct: 224 LTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVS 282

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 37/155 (23%), Positives = 75/155 (48%), Gaps = 17/155 (10%)

Query: 511 FSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNID---RIRH 566
           F     +G G  GSVY+A     G+++A+K++         + +  E++  I    +   
Sbjct: 31  FDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPV-------ESDLQEIIKEISIMQQCDS 83

Query: 567 ANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEY 626
            ++V+  G   ++    ++ EYC  G++ D++   ++        T ++  L   + LEY
Sbjct: 84  PHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTL---KGLEY 140

Query: 627 LHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           LH +     +HR+ K+ NILL+ +    ++D G+A
Sbjct: 141 LHFM---RKIHRDIKAGNILLNTEGHAKLADFGVA 172

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 25/170 (14%)

Query: 500 TIASLQQYTNSFSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELV 558
           +I S+      +++   IG G  G+VY A  +  G+ +A+++++      Q+  +   ++
Sbjct: 11  SIVSVGDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNL-----QQQPKKELII 65

Query: 559 NNID---RIRHANIVELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSD--DELKNNLSWNT 612
           N I      ++ NIV         G  L ++ EY + G+L D++     DE         
Sbjct: 66  NEILVMRENKNPNIVNYLD-SYLVGDELWVVMEYLAGGSLTDVVTETCMDE-----GQIA 119

Query: 613 RI-RMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
            + R  L   +ALE+LH      ++HR+ KS NILL  D +V ++D G  
Sbjct: 120 AVCRECL---QALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFC 163

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 76.0 bits (188), Expect = 2e-15
 Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 46/174 (26%)

Query: 516 LIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDR-------IRHA 567
           L+G G    VYRA+ +  G  +A+K +DK+A  +        +V  +         ++H 
Sbjct: 18  LLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAG------MVQRVQNEVKIHCQLKHP 71

Query: 568 NIVELKGYCAEHGQRLLIYEYCSNGTLQDMLH------SDDELKNNLSWNTRIRMALGAA 621
           +I+EL  Y  +     L+ E C NG +   L       S++E                A 
Sbjct: 72  SILELYNYFEDSNYVYLVLEMCHNGEMNRYLKNRVKPFSENE----------------AR 115

Query: 622 R-------ALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
                    + YLH      I+HR+   +N+LL  ++ + ++D GLA  +    
Sbjct: 116 HFMHQIITGMLYLHSHG---ILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPH 166

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 76.1 bits (188), Expect = 2e-15
 Identities = 35/161 (21%), Positives = 61/161 (37%), Gaps = 16/161 (9%)

Query: 517 IGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           +G+G  G V+   +   G    +K ++K  S    +    E +  +  + H NI+++   
Sbjct: 30  LGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAE-IEVLKSLDHPNIIKIFEV 88

Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR----ALEYLHEIC 631
             ++    ++ E C  G L + + S       LS            +    AL Y H   
Sbjct: 89  FEDYHNMYIVMETCEGGELLERIVSAQARGKALSE----GYVAELMKQMMNALAYFHSQ- 143

Query: 632 QPPIVHRNFKSANILL---DDDLAVSVSDCGLAPLISSGSV 669
              +VH++ K  NIL         + + D GLA L  S   
Sbjct: 144 --HVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEH 182

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 78.2 bits (193), Expect = 2e-15
 Identities = 45/186 (24%), Positives = 75/186 (40%), Gaps = 24/186 (12%)

Query: 495 TARSFTIASLQQYTNSFSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDE 553
           T   F   S   +++ +  + ++G G  G V        G+  AVK + KR   Q+ D E
Sbjct: 12  TPGMFVQHSTAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKE 71

Query: 554 FLELVNNID---RIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSW 610
            L     +    ++ H NI++L  +  + G   L+ E  + G L D + S    +   S 
Sbjct: 72  SLL--REVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIIS----RKRFS- 124

Query: 611 NTRIRMALGAAR----ALEYLHEICQPPIVHRNFKSANILL---DDDLAVSVSDCGLAPL 663
                 A    R     + Y+H+     IVHR+ K  N+LL     D  + + D GL+  
Sbjct: 125 ---EVDAARIIRQVLSGITYMHKNK---IVHRDLKPENLLLESKSKDANIRIIDFGLSTH 178

Query: 664 ISSGSV 669
             +   
Sbjct: 179 FEASKK 184

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 34/117 (29%), Positives = 48/117 (41%), Gaps = 8/117 (6%)

Query: 118 SIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLIN 177
           +IPS +P   +   L  N+ S     +   LT L  + LN+N L       F+ L  L  
Sbjct: 30  AIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLET 89

Query: 178 LDLSSNNLSGELPPSL-ENLSQLTTLHLQNNQLS----GTLDVLQDLPLRDLNIENN 229
           L ++ N L   LP  + + L  L  L L  NQL        D L    L  L++  N
Sbjct: 90  LWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK--LTYLSLGYN 143

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 16/147 (10%)

Query: 100 GAFSSIR---VIDLSNNHIGGSIPSILP---VTMQNFFLSDNQFSGSIPSSL-ATLTLLT 152
            AF  +    ++ L++N +  ++P+ +      ++  +++DN+   ++P  +   L  L 
Sbjct: 55  KAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLA 112

Query: 153 DMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSL-ENLSQLTTLHLQNNQLS- 210
           ++ L+ N L    P  F SLT L  L L  N L   LP  + + L+ L  L L NNQL  
Sbjct: 113 ELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKR 171

Query: 211 ---GTLDVLQDLPLRDLNIENNLFSGP 234
              G  D L +L    L+  N L   P
Sbjct: 172 VPEGAFDKLTELKTLKLD-NNQLKRVP 197

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 9/115 (7%)

Query: 100 GAF---SSIRVIDLSNNHIGGSIPSILP---VTMQNFFLSDNQFSGSIPSSL-ATLTLLT 152
           G F    ++  + L  N +  S+P  +      +    L  N+   S+P  +   LT L 
Sbjct: 103 GVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLK 160

Query: 153 DMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNN 207
           ++ L NN L      AF  LT L  L L +N L      + ++L +L  L LQ N
Sbjct: 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 77.7 bits (192), Expect = 3e-15
 Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 9/131 (6%)

Query: 98  NLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLN 157
            L     +  I   NN +   +P  LP+++++    +N         L  L  LT +  +
Sbjct: 190 ELQNLPFLTAIYADNNSLK-KLPD-LPLSLESIVAGNNILE--ELPELQNLPFLTTIYAD 245

Query: 158 NNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQ 217
           NNLL   +PD       L  L++  N L+ +LP   ++L+ L       + LS     L 
Sbjct: 246 NNLLK-TLPD---LPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPNLY 300

Query: 218 DLPLRDLNIEN 228
            L      I +
Sbjct: 301 YLNASSNEIRS 311

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 74.6 bits (184), Expect = 2e-14
 Identities = 41/181 (22%), Positives = 71/181 (39%), Gaps = 34/181 (18%)

Query: 94  ELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTD 153
           EL E   +  S+ V + +   +     S LP  ++   +S+NQ    +P  L   + L  
Sbjct: 105 ELPELPQSLKSLLVDNNNLKAL-----SDLPPLLEYLGVSNNQLE-KLPE-LQNSSFLKI 157

Query: 154 MSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSG-- 211
           + ++NN L  ++PD       L  +   +N L  E  P L+NL  LT ++  NN L    
Sbjct: 158 IDVDNNSLK-KLPD---LPPSLEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLKKLP 211

Query: 212 -------TLDV----LQDLP-------LRDLNIENNLFSGPIPEKMLQIPNFRKDGNPFN 253
                  ++      L++LP       L  +  +NNL    +P+    +       N   
Sbjct: 212 DLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLT 270

Query: 254 S 254
            
Sbjct: 271 D 271

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 72.0 bits (177), Expect = 2e-13
 Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 21/148 (14%)

Query: 103 SSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLS 162
            S+  +++SNN +   +P++ P  ++    S N  +  +P     L  L    +  N L 
Sbjct: 317 PSLEELNVSNNKLI-ELPALPP-RLERLIASFNHLA-EVPELPQNLKQL---HVEYNPLR 370

Query: 163 GEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP-- 220
            E PD  +S+      DL  N+   E+P   +N   L  LH++ N L        D+P  
Sbjct: 371 -EFPDIPESVE-----DLRMNSHLAEVPELPQN---LKQLHVETNPLR----EFPDIPES 417

Query: 221 LRDLNIENNLFSGPIPEKMLQIPNFRKD 248
           + DL + +     P             D
Sbjct: 418 VEDLRMNSERVVDPYEFAHETTDKLEDD 445

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 71.6 bits (176), Expect = 2e-13
 Identities = 24/133 (18%), Positives = 51/133 (38%), Gaps = 17/133 (12%)

Query: 102 FSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLL 161
              +  +  S NH+   +P  LP  ++   +  N      P    ++  L    +N++L 
Sbjct: 336 PPRLERLIASFNHL-AEVPE-LPQNLKQLHVEYNPLR-EFPDIPESVEDLR---MNSHLA 389

Query: 162 SGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP- 220
              +P+  Q+L     L + +N L  E P   E+   +  L + + ++    +   +   
Sbjct: 390 E--VPELPQNLK---QLHVETNPLR-EFPDIPES---VEDLRMNSERVVDPYEFAHETTD 440

Query: 221 -LRDLNIENNLFS 232
            L D   E++   
Sbjct: 441 KLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 66.9 bits (164), Expect = 8e-12
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 14/135 (10%)

Query: 94  ELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTD 153
           E+        S      + +    + P   P   +   ++ ++    +      L     
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAP---PGNGEQREMAVSRLRDCLDRQAHEL----- 76

Query: 154 MSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTL 213
             LNN  LS  +P+    L    +L  S N+L+ ELP   ++L  L   +     LS   
Sbjct: 77  -ELNNLGLS-SLPELPPHLE---SLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLP 130

Query: 214 DVLQDLPLRDLNIEN 228
            +L+ L + +  +E 
Sbjct: 131 PLLEYLGVSNNQLEK 145

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.4 bits (134), Expect = 4e-08
 Identities = 20/124 (16%), Positives = 43/124 (34%), Gaps = 14/124 (11%)

Query: 142 PSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTT 201
           P +++   L   +  ++NL   E+P   +++        + +      PP      ++  
Sbjct: 5   PRNVSNTFLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 202 LHLQNNQLSG--TLDV----LQDLP-----LRDLNIENNLFSGPIPEKMLQIPNFRKDGN 250
             L++        L++    L  LP     L  L    N  +  +PE    + +   D N
Sbjct: 63  SRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNN 121

Query: 251 PFNS 254
              +
Sbjct: 122 NLKA 125

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.5 bits (98), Expect = 8e-04
 Identities = 9/77 (11%), Positives = 27/77 (35%), Gaps = 5/77 (6%)

Query: 86  LNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSL 145
           L   +   E+ E      +++ + +  N +    P I   ++++  ++  +       + 
Sbjct: 382 LRMNSHLAEVPELPQ---NLKQLHVETNPL-REFPDIPE-SVEDLRMNSERVVDPYEFAH 436

Query: 146 ATLTLLTDMSLNNNLLS 162
            T   L D    ++   
Sbjct: 437 ETTDKLEDDVFEHHHHH 453

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 73.9 bits (182), Expect = 3e-15
 Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 11/119 (9%)

Query: 118 SIPSILPVTMQNFFLSDNQFSGSIPSS--LATLTLLTDMSLNNNLLSGEIPDAFQSLTGL 175
            IP  +P+      L+DN+    I S      L  L  + L  N L+G  P+AF+  + +
Sbjct: 22  EIPRDIPLHTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80

Query: 176 INLDLSSNNLSGELPPSL-ENLSQLTTLHLQNNQLS----GTLDVLQDLPLRDLNIENN 229
             L L  N +  E+   +   L QL TL+L +NQ+S    G+ + L    L  LN+ +N
Sbjct: 81  QELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS--LTSLNLASN 136

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 75.8 bits (187), Expect = 4e-15
 Identities = 42/175 (24%), Positives = 78/175 (44%), Gaps = 26/175 (14%)

Query: 502 ASLQQYTNS---FSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLEL 557
           +S   ++ +   +  + +IG+G    V  A   P  + +A+K+++     ++      EL
Sbjct: 5   SSALPWSINRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINL----EKCQTSMDEL 60

Query: 558 VNNID---RIRHANIVELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWN-- 611
           +  I    +  H NIV            L L+ +  S G++ D++        + S    
Sbjct: 61  LKEIQAMSQCHHPNIVSYYT-SFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLD 119

Query: 612 -----TRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
                T +R  L     LEYLH+  Q   +HR+ K+ NILL +D +V ++D G++
Sbjct: 120 ESTIATILREVL---EGLEYLHKNGQ---IHRDVKAGNILLGEDGSVQIADFGVS 168

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 76.6 bits (188), Expect = 4e-15
 Identities = 27/216 (12%), Positives = 52/216 (24%), Gaps = 34/216 (15%)

Query: 477 PAEGTAVKTSTKTAKPFTTARSFTIAS-LQQYTNSFSQENLIGAGMLGSVYRA-QLPDGK 534
             +  A      TA  +      T+ S L Q          +  G    V+    +   +
Sbjct: 29  ALKEPAAMVEAVTATVWPQNAETTVDSLLSQGERKLKLVEPLRVGDRSVVFLVRDVERLE 88

Query: 535 LLAVKKLDKRASSQQKD-DEFLELVNNIDRIRHANIVELKGYC----------------- 576
             A+K     A + + + +   E      R+   +  E +                    
Sbjct: 89  DFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVAVQSQPPF 148

Query: 577 ---------AEHGQRLLIYEY--CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALE 625
                          LL+          L   L      + +        +     R   
Sbjct: 149 AQLSPGQDDYAVANYLLLMPAASVDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAA 208

Query: 626 YLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
            L       +VH +F   N+ +  D  + + D    
Sbjct: 209 NLQSKG---LVHGHFTPDNLFIMPDGRLMLGDVSAL 241

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 75.3 bits (186), Expect = 5e-15
 Identities = 31/165 (18%), Positives = 60/165 (36%), Gaps = 29/165 (17%)

Query: 516 LIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNID---RIRHANIVE 571
            +G G     +        ++ A K + K    +    E  ++   I     + H ++V 
Sbjct: 22  FLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQRE--KMSMEISIHRSLAHQHVVG 79

Query: 572 LKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR--------A 623
             G+  ++    ++ E C   +L ++               R  +    AR         
Sbjct: 80  FHGFFEDNDFVFVVLELCRRRSLLELHKR------------RKALTEPEARYYLRQIVLG 127

Query: 624 LEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
            +YLH      ++HR+ K  N+ L++DL V + D GLA  +    
Sbjct: 128 CQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDG 169

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 76.4 bits (188), Expect = 6e-15
 Identities = 40/175 (22%), Positives = 71/175 (40%), Gaps = 12/175 (6%)

Query: 501 IASLQQYTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVN 559
           + S     + +   +++G G   +V+R +    G L A+K  +  +  +  D +  E   
Sbjct: 1   MGSQSTSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMRE-FE 59

Query: 560 NIDRIRHANIVELKGYCAEHGQRL--LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMA 617
            + ++ H NIV+L     E   R   LI E+C  G+L  +L  +      L  +  + + 
Sbjct: 60  VLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLE-EPSNAYGLPESEFLIVL 118

Query: 618 LGAARALEYLHEICQPPIVHRNFKSANILL----DDDLAVSVSDCGLAPLISSGS 668
                 + +L E     IVHRN K  NI+     D      ++D G A  +    
Sbjct: 119 RDVVGGMNHLRENG---IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDE 170

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 74.3 bits (183), Expect = 7e-15
 Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 11/135 (8%)

Query: 97  ENLGAFSSIRVIDLSNNHIGGSIPSILPVT-MQNFFLSDNQFSGSIPSSLATLTLLTDMS 155
            +    S ++  +  N++I  S+  +   T ++   LS NQ S  + S L  LT L ++S
Sbjct: 35  VSQKELSGVQNFNGDNSNIQ-SLAGMQFFTNLKELHLSHNQIS-DL-SPLKDLTKLEELS 91

Query: 156 LNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDV 215
           +N N L   + +   S   L  L L +N L      SL +L  L  L ++NN+L  ++ +
Sbjct: 92  VNRNRLK-NL-NGIPSAC-LSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLK-SIVM 145

Query: 216 LQDLP-LRDLNIENN 229
           L  L  L  L++  N
Sbjct: 146 LGFLSKLEVLDLHGN 160

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 13/136 (9%)

Query: 97  ENLGAFSSIRVIDLSNNHIGGSIPSI--LPVTMQNFFLSDNQFSGSIPSSLATLTLLTDM 154
                 ++    +L    +   + S   L   +QNF   ++    S+ + +   T L ++
Sbjct: 13  FPDPGLANAVKQNLGKQSV-TDLVSQKELS-GVQNFNGDNSNIQ-SL-AGMQFFTNLKEL 68

Query: 155 SLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLD 214
            L++N +S ++    + LT L  L ++ N L   L   + +   L+ L L NN+L    D
Sbjct: 69  HLSHNQIS-DL-SPLKDLTKLEELSVNRNRLK-NLNG-IPSAC-LSRLFLDNNELR-DTD 122

Query: 215 VLQDLP-LRDLNIENN 229
            L  L  L  L+I NN
Sbjct: 123 SLIHLKNLEILSIRNN 138

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 23/155 (14%), Positives = 44/155 (28%), Gaps = 25/155 (16%)

Query: 97  ENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSL 156
             L   + +  + ++ N +  ++  I    +   FL +N+       SL  L  L  +S+
Sbjct: 79  SPLKDLTKLEELSVNRNRLK-NLNGIPSACLSRLFLDNNELRD--TDSLIHLKNLEILSI 135

Query: 157 NNNLLSGEIP---------------------DAFQSLTGLINLDLSSNNLSGELPPSLEN 195
            NN L   I                           L  +  +DL+      E       
Sbjct: 136 RNNKLK-SIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPE 194

Query: 196 LSQLTTLHLQNNQLSGTLDVLQDLPLRDLNIENNL 230
           L    T+   + +      +       D  +   L
Sbjct: 195 LYITNTVKDPDGRWISPYYISNGGSYVDGCVLWEL 229

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 12/75 (16%), Positives = 32/75 (42%), Gaps = 6/75 (8%)

Query: 156 LNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDV 215
                ++   PD    L   +  +L   +++  +    + LS +   +  N+ +  +L  
Sbjct: 4   QRPTPINQVFPDP--GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SLAG 58

Query: 216 LQDLP-LRDLNIENN 229
           +Q    L++L++ +N
Sbjct: 59  MQFFTNLKELHLSHN 73

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 75.1 bits (185), Expect = 7e-15
 Identities = 48/196 (24%), Positives = 75/196 (38%), Gaps = 31/196 (15%)

Query: 480 GTAVKTSTKTAKPFTTARSFTIASLQQYTNS------FSQENLIGAGMLGSVYRAQ-LPD 532
           G  + T     +          A+L+   +             IG G  G V  A+    
Sbjct: 10  GVDLGTENLYFQSGVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHS 69

Query: 533 GKLLAVKKLDKRASSQQKDDEFLELVNNID---RIRHANIVELKGYCAEHGQRL-LIYEY 588
           G+ +AVK +D R     K      L N +      +H N+VE+       G+ L ++ E+
Sbjct: 70  GRQVAVKMMDLR-----KQQRRELLFNEVVIMRDYQHFNVVEMYK-SYLVGEELWVLMEF 123

Query: 589 CSNGTLQDMLHSD--DELKNNLSWNTRI-RMALGAARALEYLHEICQPPIVHRNFKSANI 645
              G L D++     +E          +    L   +AL YLH      ++HR+ KS +I
Sbjct: 124 LQGGALTDIVSQVRLNE-----EQIATVCEAVL---QALAYLH---AQGVIHRDIKSDSI 172

Query: 646 LLDDDLAVSVSDCGLA 661
           LL  D  V +SD G  
Sbjct: 173 LLTLDGRVKLSDFGFC 188

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 75.6 bits (186), Expect = 7e-15
 Identities = 30/144 (20%), Positives = 48/144 (33%), Gaps = 16/144 (11%)

Query: 104 SIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPS-SLATLTLLTDMSLNNNLLS 162
           S RV     + +   IPS LP           +    I   + +    L  + ++ N + 
Sbjct: 10  SNRVFLCQESKVT-EIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVL 67

Query: 163 GEIP-DAFQSLTGLINLDLSSNNLSGELPPS-LENLSQLTTLHLQNNQLS-------GTL 213
             I  D F +L  L  + +   N    + P   +NL  L  L + N  +           
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127

Query: 214 DVLQDLPLRDLN----IENNLFSG 233
                L ++D      IE N F G
Sbjct: 128 LQKVLLDIQDNINIHTIERNSFVG 151

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 67.5 bits (165), Expect = 3e-12
 Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 14/135 (10%)

Query: 103 SSIRVIDLS-NNHIGGSIPSI----LPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLN 157
               ++D+  N +I  +I       L       +L+ N       S+     L      +
Sbjct: 128 LQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD 186

Query: 158 NNLLSGEIP-DAFQSLTGLINLDLSSNNLSGELPP-SLENLSQLTTLHLQNNQLSGTLDV 215
           NN L  E+P D F   +G + LD+S   +   LP   LENL +L      N +    L  
Sbjct: 187 NNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK---KLPT 241

Query: 216 LQDLP-LRDLNIENN 229
           L+ L  L + ++   
Sbjct: 242 LEKLVALMEASLTYP 256

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 76.3 bits (188), Expect = 8e-15
 Identities = 36/160 (22%), Positives = 59/160 (36%), Gaps = 27/160 (16%)

Query: 100 GAFSSIRVIDLSNNHIGGSIPSILPVTMQNF------FLSDNQFSGSIPS-SLATLTLLT 152
           G  S+ R ++L  N+I      I   T ++        L  N     I   +   L  L 
Sbjct: 72  GIPSNTRYLNLMENNI----QMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLN 126

Query: 153 DMSLNNNLLSGEIP-DAFQSLTGLINLDLSSNNLSGELPP-SLENLSQLTTLHLQ-NNQL 209
            + L +N L+  IP  AF+ L+ L  L L +N +   +P  +   +  L  L L    +L
Sbjct: 127 TLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKL 184

Query: 210 SG-TLDVLQDLP-LRDLNIENNLFSGPIPEKMLQIPNFRK 247
              +    + L  L+ LN+               +PN   
Sbjct: 185 EYISEGAFEGLFNLKYLNLGMCNIK--------DMPNLTP 216

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 70.9 bits (174), Expect = 4e-13
 Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 8/102 (7%)

Query: 132 LSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPP 191
           L        +P+ L  L  L ++ ++ N      P +F  L+ L  L + ++ +S  +  
Sbjct: 203 LGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIER 259

Query: 192 -SLENLSQLTTLHLQNNQLSGTL--DVLQDLP-LRDLNIENN 229
            + + L+ L  L+L +N LS +L  D+   L  L +L++ +N
Sbjct: 260 NAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 70.2 bits (172), Expect = 7e-13
 Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 7/115 (6%)

Query: 100 GAF---SSIRVIDLSNNHIGGSIPSILPVT-MQNFFLSDNQFSGSIPSSLATLTLLTDMS 155
           GAF    +++ ++L   +I   +P++ P+  ++   +S N F    P S   L+ L  + 
Sbjct: 190 GAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248

Query: 156 LNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPS-LENLSQLTTLHLQNNQL 209
           + N+ +S    +AF  L  L+ L+L+ NNLS  LP      L  L  LHL +N  
Sbjct: 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 9/106 (8%)

Query: 131 FLSDNQFSGSIPSSL-ATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGEL 189
             +    S  +P  + +    L   +L  N +     D F+ L  L  L L  N++  ++
Sbjct: 60  VCTRRGLS-EVPQGIPSNTRYL---NLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QI 114

Query: 190 PP-SLENLSQLTTLHLQNNQLSG-TLDVLQDLP-LRDLNIENNLFS 232
              +   L+ L TL L +N L+       + L  LR+L + NN   
Sbjct: 115 EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 73.2 bits (180), Expect = 9e-15
 Identities = 32/145 (22%), Positives = 54/145 (37%), Gaps = 35/145 (24%)

Query: 118 SIPSILPVTMQNFFLSDNQFSGSIPSS--------LATLTL------------------L 151
            IP  +P       L++N+F+  + ++        L  +                    +
Sbjct: 25  KIPEHIPQYTAELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV 83

Query: 152 TDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPP-SLENLSQLTTLHLQNNQLS 210
            ++ L +N L       F+ L  L  L L SN ++  +   S   LS +  L L +NQ++
Sbjct: 84  NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT 142

Query: 211 ----GTLDVLQDLPLRDLNIENNLF 231
               G  D L    L  LN+  N F
Sbjct: 143 TVAPGAFDTLHS--LSTLNLLANPF 165

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 76.7 bits (188), Expect = 1e-14
 Identities = 31/134 (23%), Positives = 60/134 (44%), Gaps = 8/134 (5%)

Query: 97  ENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSL 156
               AF+     +L    +  ++      ++     +++    S+   +  L  +T + L
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFL 72

Query: 157 NNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVL 216
           N N L+ +I     +L  L  L L  N +  +L   L++L +L +L L++N +S  ++ L
Sbjct: 73  NGNKLT-DIKP-LTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGIS-DINGL 127

Query: 217 QDLP-LRDLNIENN 229
             LP L  L + NN
Sbjct: 128 VHLPQLESLYLGNN 141

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.8 bits (165), Expect = 6e-12
 Identities = 42/232 (18%), Positives = 70/232 (30%), Gaps = 8/232 (3%)

Query: 97  ENLGAFSSIRVIDLSNNHIGGSIPSILPVT-MQNFFLSDNQFSGSIPSSLATLTLLTDMS 155
             L     +  + L NN I   I  +  +T +    L DNQ S  I   LA LT L ++ 
Sbjct: 125 NGLVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLY 181

Query: 156 LNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDV 215
           L+ N +S ++  A   L  L  L+L S     +      NL    T+   +  L     +
Sbjct: 182 LSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEII 239

Query: 216 LQDLPLRDLNIENNLFSGPIPEKMLQIPNFRKDGNPFNSTVAPSRPPTSSVTPPPAPPFF 275
             D      N++ +L         +                  ++P     T        
Sbjct: 240 SDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGT 299

Query: 276 GPRPVSGSSPVSRTPPSQHTPGKQADGPTALEDSNSGKKKSSTTKKIVWISI 327
             +    +      P      G    G     + N G + +  T  +     
Sbjct: 300 VIKTKVEAGTRITAPKPPTKQGYVFKGWYT--EKNGGHEWNFNTDYMSGNDF 349

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 76.5 bits (188), Expect = 1e-14
 Identities = 35/152 (23%), Positives = 71/152 (46%), Gaps = 17/152 (11%)

Query: 102 FSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLL 161
              I V++++ N +  S+P  LP +++     DN+ S ++P   A+L  L    ++NN L
Sbjct: 79  PPQITVLEITQNALI-SLPE-LPASLEYLDACDNRLS-TLPELPASLKHL---DVDNNQL 132

Query: 162 SGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLPL 221
           +  +P+    L     ++  +N L+  LP    +   L  L ++NNQL+   ++ +   L
Sbjct: 133 T-MLPELPALLE---YINADNNQLT-MLPELPTS---LEVLSVRNNQLTFLPELPES--L 182

Query: 222 RDLNIENNLFSGPIPEKMLQIPNFRKDGNPFN 253
             L++  NL    +P   ++  +  +    F 
Sbjct: 183 EALDVSTNLLES-LPAVPVRNHHSEETEIFFR 213

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 67.7 bits (165), Expect = 6e-12
 Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 8/146 (5%)

Query: 103 SSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDM----SLNN 158
           +S+ V+ + NN +   +P  LP +++   +S N    S+P+         +         
Sbjct: 160 TSLEVLSVRNNQLT-FLPE-LPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRE 216

Query: 159 NLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQD 218
           N ++  IP+   SL     + L  N LS  +  SL   +     H      S +      
Sbjct: 217 NRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNT 275

Query: 219 LPLRDLNIENNLFSGPIPEKMLQIPN 244
           L     +     F       + QI +
Sbjct: 276 LHRPLADAVTAWFPENKQSDVSQIWH 301

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 58.8 bits (142), Expect = 4e-09
 Identities = 34/139 (24%), Positives = 51/139 (36%), Gaps = 31/139 (22%)

Query: 119 IPSILPVTMQNFFLSDNQFSGSIP-------SSLATLTLLTDMSLNNNLLSGEIPDAFQS 171
           +  +LP+   NF LS N F  +I        S+            N N     + +    
Sbjct: 1   MSIMLPIN-NNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL-- 57

Query: 172 LTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSG---------TLDV----LQD 218
           +     L L+  NLS  LP +L    Q+T L +  N L            LD     L  
Sbjct: 58  INQFSELQLNRLNLS-SLPDNL--PPQITVLEITQNALISLPELPASLEYLDACDNRLST 114

Query: 219 LP-----LRDLNIENNLFS 232
           LP     L+ L+++NN  +
Sbjct: 115 LPELPASLKHLDVDNNQLT 133

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 23/129 (17%), Positives = 31/129 (24%), Gaps = 5/129 (3%)

Query: 94  ELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPSSLATLTLL 151
               N  +  +        N I   IP  +          L DN  S  I  SL+  T  
Sbjct: 198 VPVRNHHSEETEIFFRCRENRI-THIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQ 256

Query: 152 TDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSG 211
            D        S       Q+       D  +          +  +          N  S 
Sbjct: 257 PDYHGPRIYFSMSDG--QQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSA 314

Query: 212 TLDVLQDLP 220
            LD L D  
Sbjct: 315 FLDRLSDTV 323

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 74.2 bits (183), Expect = 1e-14
 Identities = 48/165 (29%), Positives = 70/165 (42%), Gaps = 22/165 (13%)

Query: 517 IGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDR---I-----RHA 567
           +G G+   V R    P  K  AVK +D         +E  EL     +   I      H 
Sbjct: 25  LGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHP 84

Query: 568 NIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLS-WNTR--IRMALGAARAL 624
           NI++LK     +    L+++    G L D L      K  LS   TR  +R  L     +
Sbjct: 85  NIIQLKDTYETNTFFFLVFDLMKKGELFDYLTE----KVTLSEKETRKIMRALLE---VI 137

Query: 625 EYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSV 669
             LH++    IVHR+ K  NILLDDD+ + ++D G +  +  G  
Sbjct: 138 CALHKLN---IVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEK 179

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 75.6 bits (186), Expect = 2e-14
 Identities = 41/235 (17%), Positives = 75/235 (31%), Gaps = 21/235 (8%)

Query: 448 PPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTTARSFTIASLQQY 507
            P  P  P   P           + +      G    +S      F   + +    ++  
Sbjct: 92  KPCEPTAPVLIPGDERKRRRGYDVDEQGKIVRGKGTVSSNYDNYVFDIWKQYYPQPVEIK 151

Query: 508 TNSFSQ----ENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNID 562
            +           +G G  G V+R  +   G   A K +       + D E +     I 
Sbjct: 152 HDHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTP---HESDKETVR--KEIQ 206

Query: 563 ---RIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALG 619
               +RH  +V L     +  + ++IYE+ S G L + +  +    +       +R    
Sbjct: 207 TMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCK 266

Query: 620 AARALEYLHEICQPPIVHRNFKSANILL--DDDLAVSVSDCGLAPLISSGSVSQV 672
               L ++HE      VH + K  NI+        + + D GL   +      +V
Sbjct: 267 ---GLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKV 315

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 73.0 bits (180), Expect = 2e-14
 Identities = 42/181 (23%), Positives = 71/181 (39%), Gaps = 28/181 (15%)

Query: 489 TAKPFTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASS 547
           TA      R FTI       + F     +G G  G+VY A+   +  ++A+K L K    
Sbjct: 1   TALAEMPKRKFTI-------DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLE 53

Query: 548 QQKDDEFLELVNNIDR-------IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHS 600
           ++       + + + R       +RH NI+ +  Y  +  +  L+ E+   G L   L  
Sbjct: 54  KEG------VEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQK 107

Query: 601 DDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGL 660
                   S           A AL Y HE     ++HR+ K  N+L+     + ++D G 
Sbjct: 108 HGRFDEQRSA----TFMEELADALHYCHERK---VIHRDIKPENLLMGYKGELKIADFGW 160

Query: 661 A 661
           +
Sbjct: 161 S 161

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 74.4 bits (183), Expect = 3e-14
 Identities = 42/199 (21%), Positives = 74/199 (37%), Gaps = 42/199 (21%)

Query: 505 QQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNN-IDR 563
           Q   N    E ++G G  G+V       G+ +AVK++           +F ++    I  
Sbjct: 11  QSLKNLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLI---------DFCDIALMEIKL 61

Query: 564 IR----HANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALG 619
           +     H N++             +  E C N  LQD++    E KN    N +++    
Sbjct: 62  LTESDDHPNVIRYYCSETTDRFLYIALELC-NLNLQDLV----ESKNVSDENLKLQKEYN 116

Query: 620 AAR-------ALEYLHEICQPPIVHRNFKSANILLD-------------DDLAVSVSDCG 659
                      + +LH +    I+HR+ K  NIL+              ++L + +SD G
Sbjct: 117 PISLLRQIASGVAHLHSLK---IIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFG 173

Query: 660 LAPLISSGSVSQVSHNLTI 678
           L   + SG  S  ++    
Sbjct: 174 LCKKLDSGQSSFRTNLNNP 192

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 72.4 bits (178), Expect = 3e-14
 Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 8/117 (6%)

Query: 118 SIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLIN 177
           S+PS +P   +   L     +    ++   LT LT ++L+ N L       F  LT L  
Sbjct: 28  SVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGT 87

Query: 178 LDLSSNNLSGELPPSL-ENLSQLTTLHLQNNQL----SGTLDVLQDLPLRDLNIENN 229
           L L++N L+  LP  + ++L+QL  L+L  NQL    SG  D L    L++L +  N
Sbjct: 88  LGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK--LKELRLNTN 141

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 11/117 (9%)

Query: 100 GAF---SSIRVIDLSNNHIGGSIPSILP---VTMQNFFLSDNQFSGSIPSSL-ATLTLLT 152
           G F   + +  + L+NN +  S+P  +      +   +L  NQ   S+PS +   LT L 
Sbjct: 77  GVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLK 134

Query: 153 DMSLNNNLLSGEIPD-AFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQ 208
           ++ LN N L   IP  AF  LT L  L LS+N L      + + L +L T+ L  NQ
Sbjct: 135 ELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 74.7 bits (184), Expect = 3e-14
 Identities = 35/184 (19%), Positives = 71/184 (38%), Gaps = 19/184 (10%)

Query: 494 TTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDD 552
            ++    +     +   ++   ++G G  G V +       +  AVK ++K ++  +   
Sbjct: 7   HSSGRENLYFQGTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTS 66

Query: 553 EFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNT 612
             L  V  + ++ H NI++L     +     ++ E  + G L D +      +   S   
Sbjct: 67  TILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIK----RKRFS--- 119

Query: 613 RIRMALGAAR----ALEYLHEICQPPIVHRNFKSANILL---DDDLAVSVSDCGLAPLIS 665
               A    +     + Y+H+     IVHR+ K  NILL   + D  + + D GL+    
Sbjct: 120 -EHDAARIIKQVFSGITYMHKHN---IVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQ 175

Query: 666 SGSV 669
             + 
Sbjct: 176 QNTK 179

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 72.6 bits (179), Expect = 4e-14
 Identities = 35/169 (20%), Positives = 62/169 (36%), Gaps = 35/169 (20%)

Query: 517 IGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           +G G  G V +       +  AVK ++K ++  +     L  V  + ++ H NI++L   
Sbjct: 30  LGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEI 89

Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRI--------RMALGAAR----A 623
             +     ++ E  + G L D                 I          A    +     
Sbjct: 90  LEDSSSFYIVGELYTGGELFD----------------EIIKRKRFSEHDAARIIKQVFSG 133

Query: 624 LEYLHEICQPPIVHRNFKSANILL---DDDLAVSVSDCGLAPLISSGSV 669
           + Y+H+     IVHR+ K  NILL   + D  + + D GL+      + 
Sbjct: 134 ITYMHKHN---IVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTK 179

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 74.0 bits (182), Expect = 5e-14
 Identities = 26/135 (19%), Positives = 55/135 (40%), Gaps = 10/135 (7%)

Query: 98  NLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLN 157
           ++   + +  ++   N +     S  P  +     + N  +  I   ++  T LT++  +
Sbjct: 101 DVTPLTKLTYLNCDTNKLTKLDVSQNP-LLTYLNCARNTLT-EID--VSHNTQLTELDCH 156

Query: 158 NNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQ 217
            N    ++       T L  LD S N ++ EL   +     L  L+   N ++  LD+ Q
Sbjct: 157 LNKKITKLD--VTPQTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCDTNNIT-KLDLNQ 210

Query: 218 DLPLRDLNIENNLFS 232
           ++ L  L+  +N  +
Sbjct: 211 NIQLTFLDCSSNKLT 225

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 72.0 bits (177), Expect = 2e-13
 Identities = 29/140 (20%), Positives = 59/140 (42%), Gaps = 12/140 (8%)

Query: 98  NLGAFSSIRVIDLSNNHIGGSIPSI-LPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSL 156
           +    +++  +D  N+ I   +  I     +     + N  + ++   L+  T LT ++ 
Sbjct: 37  SEEQLATLTSLDCHNSSI-TDMTGIEKLTGLTKLICTSNNIT-TLD--LSQNTNLTYLAC 92

Query: 157 NNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVL 216
           ++N L+  +      LT L  L+  +N L+ +L  S      LT L+   N L+  +DV 
Sbjct: 93  DSNKLT-NLD--VTPLTKLTYLNCDTNKLT-KLDVS--QNPLLTYLNCARNTLT-EIDVS 145

Query: 217 QDLPLRDLNIENNLFSGPIP 236
            +  L +L+   N     + 
Sbjct: 146 HNTQLTELDCHLNKKITKLD 165

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 70.1 bits (172), Expect = 9e-13
 Identities = 25/136 (18%), Positives = 56/136 (41%), Gaps = 10/136 (7%)

Query: 97  ENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSL 156
             +   + +  +  ++N+I  ++       +       N+ + ++   +  LT LT ++ 
Sbjct: 58  TGIEKLTGLTKLICTSNNIT-TLDLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNC 113

Query: 157 NNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVL 216
           + N L+ ++         L  L+ + N L+ E+   + + +QLT L    N+    LDV 
Sbjct: 114 DTNKLT-KLD--VSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLDVT 167

Query: 217 QDLPLRDLNIENNLFS 232
               L  L+   N  +
Sbjct: 168 PQTQLTTLDCSFNKIT 183

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 69.7 bits (171), Expect = 9e-13
 Identities = 33/140 (23%), Positives = 52/140 (37%), Gaps = 20/140 (14%)

Query: 98  NLGAFSSIRVIDLSNNHIGGSIPSILPVT----MQNFFLSDNQFSGSIPSSLATLTLLTD 153
           +L     +  +D S+N +     + + VT    +  F  S N  +  +  S  TL+ LT 
Sbjct: 207 DLNQNIQLTFLDCSSNKL-----TEIDVTPLTQLTYFDCSVNPLT-ELDVS--TLSKLTT 258

Query: 154 MSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTL 213
           +      L  EI       T LI           EL   + + +QL  L  Q   ++  L
Sbjct: 259 LHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT-EL 312

Query: 214 DVLQDLP-LRDLNIENNLFS 232
           D L   P L  L + N   +
Sbjct: 313 D-LSQNPKLVYLYLNNTELT 331

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 17/162 (10%), Positives = 49/162 (30%), Gaps = 10/162 (6%)

Query: 98  NLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLN 157
           ++   + + ++D     I   +       +   +L++ + +  +   ++  T L  +S  
Sbjct: 292 DVTHNTQLYLLDCQAAGIT-ELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCV 347

Query: 158 NNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLT-TLHLQNNQLSGTLDVL 216
           N  +  +   +   +  L N   +       +P      + LT  +        G    +
Sbjct: 348 NAHIQ-DFS-SVGKIPALNNNFEAEGQTI-TMPKETLTNNSLTIAVSPDLLDQFGNPMNI 404

Query: 217 QDLPLRDLNIENNLFS-GPIPEKMLQIP-NFRKDGNPFNSTV 256
           +       +   N  +   +      +   F  +      TV
Sbjct: 405 EPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGTV 446

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.9 bits (130), Expect = 9e-08
 Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 6/85 (7%)

Query: 148 LTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNN 207
                  +            + + L  L +LD  +++++ ++   +E L+ LT L   +N
Sbjct: 20  FASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSN 74

Query: 208 QLSGTLDVLQDLPLRDLNIENNLFS 232
            ++ TLD+ Q+  L  L  ++N  +
Sbjct: 75  NIT-TLDLSQNTNLTYLACDSNKLT 98

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 7/66 (10%)

Query: 165 IPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP-LRD 223
            PD   +    +               S E L+ LT+L   N+ ++  +  ++ L  L  
Sbjct: 15  FPDD--NFASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSIT-DMTGIEKLTGLTK 68

Query: 224 LNIENN 229
           L   +N
Sbjct: 69  LICTSN 74

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 74.7 bits (183), Expect = 5e-14
 Identities = 43/162 (26%), Positives = 67/162 (41%), Gaps = 15/162 (9%)

Query: 517 IGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVEL--- 572
           +G G  G V R      G+ +A+K+  +  S + ++   LE +  + ++ H N+V     
Sbjct: 22  LGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLE-IQIMKKLNHPNVVSAREV 80

Query: 573 ---KGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
                  A +   LL  EYC  G L+  L+   E    L       +    + AL YLHE
Sbjct: 81  PDGLQKLAPNDLPLLAMEYCEGGDLRKYLN-QFENCCGLKEGPIRTLLSDISSALRYLHE 139

Query: 630 ICQPPIVHRNFKSANILLD---DDLAVSVSDCGLAPLISSGS 668
                I+HR+ K  NI+L      L   + D G A  +  G 
Sbjct: 140 NR---IIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGE 178

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 72.7 bits (179), Expect = 7e-14
 Identities = 48/241 (19%), Positives = 72/241 (29%), Gaps = 56/241 (23%)

Query: 445 PPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTTARSFTIASL 504
                                           P   + V               F     
Sbjct: 6   HHSSGVDLGTENLYFQSMSSVTASAA------PGTASLVPDYWIDGSNRDALSDF----- 54

Query: 505 QQYTNSFSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDR 563
             +      E  +G G    VYR  Q    K  A+K L K    +    E    +  + R
Sbjct: 55  --FE--VESE--LGRGATSIVYRCKQKGTQKPYALKVLKKTVDKKIVRTE----IGVLLR 104

Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRI--------R 615
           + H NI++LK       +  L+ E  + G L D                RI        R
Sbjct: 105 LSHPNIIKLKEIFETPTEISLVLELVTGGELFD----------------RIVEKGYYSER 148

Query: 616 MALGAAR----ALEYLHEICQPPIVHRNFKSANILL---DDDLAVSVSDCGLAPLISSGS 668
            A  A +    A+ YLHE     IVHR+ K  N+L      D  + ++D GL+ ++    
Sbjct: 149 DAADAVKQILEAVAYLHENG---IVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQV 205

Query: 669 V 669
           +
Sbjct: 206 L 206

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 72.5 bits (178), Expect = 1e-13
 Identities = 44/240 (18%), Positives = 81/240 (33%), Gaps = 34/240 (14%)

Query: 443 MMPPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTTARSFTIA 502
           M+       PP P P P PPP P    +   P  P      +      K     +   I 
Sbjct: 1   MLSNSQGQSPPVPFPAPAPPPQPPTPALPHPPAQPPPPPPQQFPQFHVKSGLQIKKNAI- 59

Query: 503 SLQQYTNSFSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNI 561
            +  Y        ++G G+ G V +       +  A+K L     ++++ +         
Sbjct: 60  -IDDY---KVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQ-- 113

Query: 562 DRIRHANIVELKGYCAEHGQR----LLIYEYCSNGTLQDMLHSDDELKNNLSWNTR---- 613
                 +IV +              L++ E    G L   +      + + ++  R    
Sbjct: 114 ----CPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQD----RGDQAFTEREASE 165

Query: 614 -IRMALGAARALEYLHEICQPPIVHRNFKSANILL---DDDLAVSVSDCGLAPLISSGSV 669
            ++       A++YLH I    I HR+ K  N+L      +  + ++D G A   +S + 
Sbjct: 166 IMKSIGE---AIQYLHSIN---IAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNS 219

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 71.1 bits (175), Expect = 1e-13
 Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 19/163 (11%)

Query: 516 LIGAGMLGSVYRAQLPDGKL---LAVKKLDKRASSQQKDDEFLEL----VNNIDRIRHAN 568
            +G G + +VY A+  D  L   +A+K +       ++ +E L+     V+N  ++ H N
Sbjct: 18  KLGGGGMSTVYLAE--DTILNIKVAIKAIF---IPPREKEETLKRFEREVHNSSQLSHQN 72

Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           IV +     E     L+ EY    TL + + S       LS +T I         +++ H
Sbjct: 73  IVSMIDVDEEDDCYYLVMEYIEGPTLSEYIES----HGPLSVDTAINFTNQILDGIKHAH 128

Query: 629 EICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQ 671
           ++    IVHR+ K  NIL+D +  + + D G+A  +S  S++Q
Sbjct: 129 DM---RIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQ 168

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 71.2 bits (174), Expect = 2e-13
 Identities = 28/212 (13%), Positives = 65/212 (30%), Gaps = 35/212 (16%)

Query: 482 AVKTSTKTAKPFTTARSFTIAS-LQQYTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVK 539
           +   S  +   + T + F + S L +   +  +  ++G     +   A     G+   V 
Sbjct: 45  SAADSLVSTSLWNTGQPFRVESELGERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVH 104

Query: 540 KLDKRASSQQKDDE--------------------------FLELVNNIDRIRHANIVELK 573
                        +                          F+   + +   +   ++ ++
Sbjct: 105 VPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVR 164

Query: 574 GYCAEHG--QRLLIYE--YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
               +     R  +Y     +  T  ++L S      +L  + R+++ L   R L  LH 
Sbjct: 165 LDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHH 224

Query: 630 ICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
                +VH   +  +I+LD    V ++     
Sbjct: 225 YG---LVHTYLRPVDIVLDQRGGVFLTGFEHL 253

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 70.8 bits (174), Expect = 3e-13
 Identities = 38/200 (19%), Positives = 70/200 (35%), Gaps = 35/200 (17%)

Query: 486 STKTAKPFTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKR 544
           S    +       F + +  ++++++  +  +G G    V R      G   A K ++ +
Sbjct: 6   SMTGGQQMGRGSEFMMNASTKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTK 65

Query: 545 ASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDEL 604
             S +   +         +++H NIV L     E     L+++  + G L +        
Sbjct: 66  KLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFE-------- 117

Query: 605 KNNLSWNTRI--------RMALGAAR----ALEYLHEICQPPIVHRNFKSANILL---DD 649
                    I          A    +    ++ Y H      IVHRN K  N+LL     
Sbjct: 118 --------DIVAREFYSEADASHCIQQILESIAYCHSNG---IVHRNLKPENLLLASKAK 166

Query: 650 DLAVSVSDCGLAPLISSGSV 669
             AV ++D GLA  ++    
Sbjct: 167 GAAVKLADFGLAIEVNDSEA 186

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 68.2 bits (167), Expect = 3e-13
 Identities = 40/122 (32%), Positives = 49/122 (40%), Gaps = 7/122 (5%)

Query: 118 SIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLIN 177
           S+P+ +P       L  N            LT LT + L  N L       F  LT L  
Sbjct: 21  SVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTY 80

Query: 178 LDLSSNNLSGELPPSL-ENLSQLTTLHLQNNQL----SGTLDVLQDLPLRDLNIENNLFS 232
           L+LS+N L   LP  + + L+QL  L L  NQL     G  D L  L    L   N L S
Sbjct: 81  LNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKS 138

Query: 233 GP 234
            P
Sbjct: 139 VP 140

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 124 PVTMQNFFLSDNQFSGSIPSSL-ATLTLLTDMSLNNNLLSGEIPD-AFQSLTGLINLDLS 181
             ++    LS NQ   S+P+ +   LT L +++LN N L   +PD  F  LT L +L L 
Sbjct: 75  LTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLY 132

Query: 182 SNNLSGELPPSLENLSQLTTLHLQNNQ 208
            N L        + L+ L  + L +N 
Sbjct: 133 QNQLKSVPDGVFDRLTSLQYIWLHDNP 159

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 71.7 bits (176), Expect = 3e-13
 Identities = 38/234 (16%), Positives = 73/234 (31%), Gaps = 52/234 (22%)

Query: 455 PPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTTARSFTIASLQQYTNSFSQE 514
                        + + + P                        +      +   S+ + 
Sbjct: 4   HHHHSSGRENLYFQGIAINP----------------------GMYVRKKEGKIGESYFKV 41

Query: 515 NLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFL--------ELVNNID--- 562
             +G+G  G V    +       A+K + K    + +  +          E+ N I    
Sbjct: 42  RKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLK 101

Query: 563 RIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR 622
            + H NI++L     +     L+ E+   G L + + +    ++          A    +
Sbjct: 102 SLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQIIN----RHKFD----ECDAANIMK 153

Query: 623 ----ALEYLHEICQPPIVHRNFKSANILL---DDDLAVSVSDCGLAPLISSGSV 669
                + YLH+     IVHR+ K  NILL   +  L + + D GL+   S    
Sbjct: 154 QILSGICYLHKHN---IVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYK 204

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 69.5 bits (171), Expect = 4e-13
 Identities = 38/182 (20%), Positives = 61/182 (33%), Gaps = 39/182 (21%)

Query: 508 TNSFSQE----NLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNID 562
           +  FS        +G G    V R      G   A K ++ +  S +   +         
Sbjct: 1   STKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICR 60

Query: 563 RIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRI-------- 614
           +++H NIV L     E     L+++  + G L +                 I        
Sbjct: 61  KLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFE----------------DIVAREFYSE 104

Query: 615 RMALGAAR----ALEYLHEICQPPIVHRNFKSANILL---DDDLAVSVSDCGLAPLISSG 667
             A    +    ++ Y H      IVHRN K  N+LL       AV ++D GLA  ++  
Sbjct: 105 ADASHCIQQILESIAYCHSNG---IVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDS 161

Query: 668 SV 669
             
Sbjct: 162 EA 163

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 69.7 bits (171), Expect = 4e-13
 Identities = 31/134 (23%), Positives = 61/134 (45%), Gaps = 8/134 (5%)

Query: 97  ENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSL 156
            +  AF+     +L    +  ++      ++     +++    S+   +  L  +T + L
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFL 75

Query: 157 NNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVL 216
           N N L+ +I     +L  L  L L  N +  +L   L++L +L +L L++N +S  ++ L
Sbjct: 76  NGNKLT-DIKP-LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGIS-DINGL 130

Query: 217 QDLP-LRDLNIENN 229
             LP L  L + NN
Sbjct: 131 VHLPQLESLYLGNN 144

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 8/136 (5%)

Query: 97  ENLGAFSSIRVIDLSNNHIGGSIPSILPVT-MQNFFLSDNQFSGSIPSSLATLTLLTDMS 155
             L     +  + L NN I   I  +  +T +    L DNQ S  I   LA LT L ++ 
Sbjct: 128 NGLVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLY 184

Query: 156 LNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDV 215
           L+ N +S ++  A   L  L  L+L S     +      NL    T+   +  L  T ++
Sbjct: 185 LSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV-TPEI 241

Query: 216 LQDLP-LRDLNIENNL 230
           + D       N++ +L
Sbjct: 242 ISDDGDYEKPNVKWHL 257

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 68.2 bits (167), Expect = 4e-13
 Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 12/124 (9%)

Query: 118 SIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLIN 177
           S+P+ +P   Q  +L DNQ +   P    +L  L ++ L +N L       F SLT L  
Sbjct: 33  SVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV 92

Query: 178 LDLSSNNLSGELPPSL-ENLSQLTTLHLQNNQLS------GTLDVLQDLPLRDLNIENNL 230
           LDL +N L+  LP ++ + L  L  L +  N+L+        L  L  L L      N L
Sbjct: 93  LDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ----NQL 147

Query: 231 FSGP 234
            S P
Sbjct: 148 KSIP 151

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 125 VTMQNFFLSDNQFSGSIPSSL-ATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSN 183
             +    L  NQ +  +PS++   L  L ++ +  N L+ E+P   + LT L +L L  N
Sbjct: 88  TQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQN 145

Query: 184 NLSGELPPSLENLSQLTTLHLQNNQ 208
            L      + + LS LT  +L  N 
Sbjct: 146 QLKSIPHGAFDRLSSLTHAYLFGNP 170

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 71.1 bits (174), Expect = 5e-13
 Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 6/115 (5%)

Query: 118 SIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLIN 177
            +P  LP   +   LS N  S      ++ L+ L  + L++N +       F     L  
Sbjct: 45  HVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104

Query: 178 LDLSSNNLSGELPPSLENLSQLTTLHLQNNQLS--GTLDVLQDLP-LRDLNIENN 229
           LD+S N L   +      ++ L  L L  N            +L  L  L +   
Sbjct: 105 LDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA 156

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 65.3 bits (159), Expect = 3e-11
 Identities = 28/147 (19%), Positives = 61/147 (41%), Gaps = 21/147 (14%)

Query: 99  LGAFSS---IRVIDLSNNHIGGSIPSI--LPVTMQNFFLSDNQF----SGSIPSSLATLT 149
               S+   ++ + L  N +  +   +  +   M +    D       S +   + A   
Sbjct: 370 FQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428

Query: 150 LLTDMSLNNNLLSGEIPDAFQSLTG-LINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQ 208
            +  ++L++N+L+      F+ L   +  LDL +N +   +P  + +L  L  L++ +NQ
Sbjct: 429 SILVLNLSSNMLT---GSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQ 484

Query: 209 LS----GTLDVLQDLPLRDLNIENNLF 231
           L     G  D L    L+ + + +N +
Sbjct: 485 LKSVPDGVFDRLTS--LQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 61.8 bits (150), Expect = 4e-10
 Identities = 27/136 (19%), Positives = 51/136 (37%), Gaps = 11/136 (8%)

Query: 102 FSSIRVIDLSNNHIGG--SIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNN 159
           F+ + +  LS +       +    P +      + N F+ S+    +TL  L  + L  N
Sbjct: 328 FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387

Query: 160 LLSGEIPDAFQSLTGLINLDLSSNNL----SGELPPSLENLSQLTTLHLQNNQLSGTLDV 215
            L             + +L+    +L    S     +      +  L+L +N L  T  V
Sbjct: 388 GLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML--TGSV 444

Query: 216 LQDLP--LRDLNIENN 229
            + LP  ++ L++ NN
Sbjct: 445 FRCLPPKVKVLDLHNN 460

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 57.6 bits (139), Expect = 9e-09
 Identities = 22/140 (15%), Positives = 47/140 (33%), Gaps = 14/140 (10%)

Query: 108 IDLSNNHIGGSI----PSILPVTMQNFFLSD---NQFSGSIPSSLATLTLLTDMSLNNNL 160
           +++ N  I   I     +     +++  +       F  S  +  +    +    L+ + 
Sbjct: 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD 340

Query: 161 LSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQL------SGTLD 214
                     S +    L+ + N  +  +      L +L TL LQ N L      +    
Sbjct: 341 TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK 400

Query: 215 VLQDLPLRDLNIENNLFSGP 234
            +  L   D+++ N+L S  
Sbjct: 401 NMSSLETLDVSL-NSLNSHA 419

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.3 bits (120), Expect = 1e-06
 Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 26/171 (15%)

Query: 100 GAFSSI---RVIDLSNNHIGGSIPSILP-------VTMQNFFLSDNQFSGSIPSSLATLT 149
              S +   RV+ LS+N I       L          ++   +S N+   +I      + 
Sbjct: 70  PDISFLSELRVLRLSHNRI-----RSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMA 121

Query: 150 LLTDMSLNNNLLSGEIPDA--FQSLTGLINLDLSSNNLSGELPPSLENLSQLT-TLHLQN 206
            L  + L+ N     +P    F +LT L  L LS+          + +L      L L +
Sbjct: 122 SLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVS 180

Query: 207 NQLS-GTLDVLQDLPLRDLNIE---NNLFSGPIPEKMLQIPNFRKDGNPFN 253
             +  G  + LQ      L++    N+LFS  +   +  + + +      N
Sbjct: 181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLN 231

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 70.0 bits (172), Expect = 5e-13
 Identities = 38/187 (20%), Positives = 64/187 (34%), Gaps = 22/187 (11%)

Query: 490 AKPFTTARSFTIASLQQYTNSFSQE----NLIGAGMLGSVYRA-QLPDGKLLAVKKLDKR 544
             P  +     I  +      F        +IG G    V R      G+  AVK +D  
Sbjct: 1   GSPGISGGGGGILDMADDDVLFEDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVA 60

Query: 545 ASSQQKDDEFLELVNNID---RIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSD 601
             +        +L         ++H +IVEL    +  G   +++E+     L   +   
Sbjct: 61  KFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKR 120

Query: 602 DELKNNLSWNTRIRMALGAAR----ALEYLHEICQPPIVHRNFKSANILL---DDDLAVS 654
            +     S      +A    R    AL Y H+     I+HR+ K   +LL   ++   V 
Sbjct: 121 ADAGFVYSE----AVASHYMRQILEALRYCHDNN---IIHRDVKPHCVLLASKENSAPVK 173

Query: 655 VSDCGLA 661
           +   G+A
Sbjct: 174 LGGFGVA 180

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 70.6 bits (172), Expect = 8e-13
 Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 6/116 (5%)

Query: 97  ENLGAFSSIRVIDLSNNHIGGSIPSILPVT-MQNFFLSDNQFSGSIPSSLATLTLLTDMS 155
                ++ +RV+ L++  +   +  +  +  + +  LS N+   ++P +LA L  L  + 
Sbjct: 435 VLKMEYADVRVLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQ 492

Query: 156 LNNNLLSGEIPDAFQSLTGLINLDLSSNNLSG-ELPPSLENLSQLTTLHLQNNQLS 210
            ++N L   +     +L  L  L L +N L        L +  +L  L+LQ N L 
Sbjct: 493 ASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 66.7 bits (162), Expect = 1e-11
 Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 9/134 (6%)

Query: 124 PVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSN 183
           P+         ++F             +  + L +  L+  +    + L  + +LDLS N
Sbjct: 416 PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHN 473

Query: 184 NLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP-LRDLNIENNLFSG-PIPEKMLQ 241
            L   LPP+L  L  L  L   +N L   +D + +LP L++L + NN        + ++ 
Sbjct: 474 RLR-ALPPALAALRCLEVLQASDNALE-NVDGVANLPRLQELLLCNNRLQQSAAIQPLVS 531

Query: 242 IPNFRK---DGNPF 252
            P        GN  
Sbjct: 532 CPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 23/115 (20%), Positives = 38/115 (33%), Gaps = 31/115 (26%)

Query: 94  ELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTD 153
            L   L A   + V+  S+N +  ++                         +A L  L +
Sbjct: 477 ALPPALAALRCLEVLQASDNAL-ENVD-----------------------GVANLPRLQE 512

Query: 154 MSLNNNLLSG-EIPDAFQSLTGLINLDLSSNNLS------GELPPSLENLSQLTT 201
           + L NN L          S   L+ L+L  N+L         L   L ++S + T
Sbjct: 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 68.8 bits (169), Expect = 9e-13
 Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 41/172 (23%)

Query: 514 ENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKD--DEFLELVNNIDRIRHANIV 570
             ++G+G    V+   Q   GKL A+K + K  + +     +E    +  + +I+H NIV
Sbjct: 14  MEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENE----IAVLKKIKHENIV 69

Query: 571 ELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRI--------RMALGAAR 622
            L+          L+ +  S G L D                RI        + A    +
Sbjct: 70  TLEDIYESTTHYYLVMQLVSGGELFD----------------RILERGVYTEKDASLVIQ 113

Query: 623 ----ALEYLHEICQPPIVHRNFKSANILL---DDDLAVSVSDCGLAPLISSG 667
               A++YLHE     IVHR+ K  N+L    +++  + ++D GL+ +  +G
Sbjct: 114 QVLSAVKYLHENG---IVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNG 162

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 69.3 bits (170), Expect = 1e-12
 Identities = 42/244 (17%), Positives = 87/244 (35%), Gaps = 15/244 (6%)

Query: 432 HEIDMSSLDMMMMPPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAK 491
             +D+ + ++                            +  +  V ++ T+       A 
Sbjct: 10  SGVDLGTENLYFQSMKNSGDQDSRSGHNEAKEVWSNADLTERMPVKSKRTSALAVDIPAP 69

Query: 492 PFTTARSFTIASLQQYTN--SFSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQ 548
           P         A      +  + S+  ++G G  G V++  +   G  LA K +  R    
Sbjct: 70  PAPFDHRIVTAKQGAVNSFYTVSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTR---G 126

Query: 549 QKDDEFLEL-VNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNN 607
            KD E ++  ++ ++++ HAN+++L          +L+ EY   G L D +  +      
Sbjct: 127 MKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGELFDRIIDESYNLTE 186

Query: 608 LSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILL--DDDLAVSVSDCGLAPLIS 665
           L     ++        + ++H++    I+H + K  NIL    D   + + D GLA    
Sbjct: 187 LDTILFMKQICE---GIRHMHQM---YILHLDLKPENILCVNRDAKQIKIIDFGLARRYK 240

Query: 666 SGSV 669
               
Sbjct: 241 PREK 244

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 68.0 bits (167), Expect = 1e-12
 Identities = 37/169 (21%), Positives = 58/169 (34%), Gaps = 37/169 (21%)

Query: 517 IGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           IG G  G V  A Q       A KK+ K          F + +  +  + H NI+ L   
Sbjct: 17  IGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDR--FKQEIEIMKSLDHPNIIRLYET 74

Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRI--------RMALGAAR----A 623
             ++    L+ E C+ G L +                R+          A    +    A
Sbjct: 75  FEDNTDIYLVMELCTGGELFE----------------RVVHKRVFRESDAARIMKDVLSA 118

Query: 624 LEYLHEICQPPIVHRNFKSANILL---DDDLAVSVSDCGLAPLISSGSV 669
           + Y H++    + HR+ K  N L      D  + + D GLA     G +
Sbjct: 119 VAYCHKL---NVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKM 164

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 69.3 bits (170), Expect = 1e-12
 Identities = 36/167 (21%), Positives = 62/167 (37%), Gaps = 35/167 (20%)

Query: 517 IGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           +G G    V R  ++  G+  A   ++ +  S +   +          ++H NIV L   
Sbjct: 19  LGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDS 78

Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRI--------RMALGAAR----A 623
            +E G   LI++  + G L +                 I          A    +    A
Sbjct: 79  ISEEGHHYLIFDLVTGGELFE----------------DIVAREYYSEADASHCIQQILEA 122

Query: 624 LEYLHEICQPPIVHRNFKSANILL---DDDLAVSVSDCGLAPLISSG 667
           + + H++    +VHRN K  N+LL       AV ++D GLA  +   
Sbjct: 123 VLHCHQMG---VVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGE 166

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 41/187 (21%), Positives = 78/187 (41%), Gaps = 22/187 (11%)

Query: 497 RSFTIASLQQYTNSFSQE----NLIGAGMLGSVYRA-QLPDGKLLAVKKLDKR---ASSQ 548
              T+     Y  +   E      +G+G  G V  A +    K +A++ + KR     S 
Sbjct: 119 FDLTVDDQSVYPKALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSA 178

Query: 549 QKDDEFLELVNNID---RIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELK 605
           ++ D  L +   I+   ++ H  I+++K +  +     ++ E    G L D +       
Sbjct: 179 READPALNVETEIEILKKLNHPCIIKIKNFF-DAEDYYIVLELMEGGELFDKVVG----N 233

Query: 606 NNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILL---DDDLAVSVSDCGLAP 662
             L   T          A++YLHE     I+HR+ K  N+LL   ++D  + ++D G + 
Sbjct: 234 KRLKEATCKLYFYQMLLAVQYLHENG---IIHRDLKPENVLLSSQEEDCLIKITDFGHSK 290

Query: 663 LISSGSV 669
           ++   S+
Sbjct: 291 ILGETSL 297

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 34/107 (31%), Positives = 45/107 (42%), Gaps = 6/107 (5%)

Query: 118 SIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLIN 177
           S+P+ +P +     L  N+           LT LT +SL+ N +       F  LT L  
Sbjct: 21  SVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTI 80

Query: 178 LDLSSNNLSGELPPSL-ENLSQLTTLHLQNNQL----SGTLDVLQDL 219
           L L  N L   LP  + + L+QL  L L  NQL     G  D L  L
Sbjct: 81  LYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSL 126

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 48/162 (29%), Positives = 73/162 (45%), Gaps = 19/162 (11%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNI-DRIRH 566
           + F    ++G G  G V+  Q+   GKL A KKL+K+   ++K  +   +   I  ++  
Sbjct: 185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHS 244

Query: 567 ANIVELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRI---RMALGAAR 622
             IV L  Y  E    L L+    + G +    H    + N    N      R     A+
Sbjct: 245 RFIVSLA-YAFETKTDLCLVMTIMNGGDI--RYH----IYNVDEDNPGFQEPRAIFYTAQ 297

Query: 623 ---ALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
               LE+LH+     I++R+ K  N+LLDDD  V +SD GLA
Sbjct: 298 IVSGLEHLHQRN---IIYRDLKPENVLLDDDGNVRISDLGLA 336

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 66.8 bits (164), Expect = 2e-12
 Identities = 44/169 (26%), Positives = 66/169 (39%), Gaps = 39/169 (23%)

Query: 516 LIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDR-------IRHA 567
            +G G  G V  A      + +AVK +D            ++   NI +       + H 
Sbjct: 14  TLGEGAYGEVQLAVNRVTEEAVAVKIVDM--------KRAVDCPENIKKEICINKMLNHE 65

Query: 568 NIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR----- 622
           N+V+  G+  E   + L  EYCS G L D +               I M    A+     
Sbjct: 66  NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEP------------DIGMPEPDAQRFFHQ 113

Query: 623 ---ALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
               + YLH I    I HR+ K  N+LLD+   + +SD GLA +    +
Sbjct: 114 LMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNN 159

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 69.1 bits (169), Expect = 2e-12
 Identities = 50/165 (30%), Positives = 70/165 (42%), Gaps = 26/165 (15%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEF-------LELVNN 560
           N FS   +IG G  G VY  +  D GK+ A+K LDK+    ++ +         L LV+ 
Sbjct: 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 248

Query: 561 IDRIRHANIVELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALG 619
            D      IV +  Y      +L  I +  + G L   L                 M   
Sbjct: 249 GD---CPFIVCMS-YAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEA-------DMRFY 297

Query: 620 AAR---ALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           AA     LE++H      +V+R+ K ANILLD+   V +SD GLA
Sbjct: 298 AAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLA 339

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.8 bits (161), Expect = 3e-12
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 10/107 (9%)

Query: 128 QNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIP-DAFQSLTGLINLDLSSNNLS 186
           ++F ++       IPS   +   L    L    L   IP  AF +L  +  + +S +   
Sbjct: 14  EDFRVTCKDIQ-RIPSLPPSTQTL---KLIETHLR-TIPSHAFSNLPNISRIYVSIDVTL 68

Query: 187 GELPP-SLENLSQLTTLHLQNNQLSGTL--DVLQDLP-LRDLNIENN 229
            +L   S  NLS++T + ++N +    +  D L++LP L+ L I N 
Sbjct: 69  QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT 115

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.9 bits (151), Expect = 8e-11
 Identities = 25/159 (15%), Positives = 59/159 (37%), Gaps = 23/159 (14%)

Query: 100 GAFS---SIRVIDLSNNHIGGSIPSILPVTMQN------FFLSDNQFSGSIP--SSLATL 148
            +F     +  I++ N     ++  I P  ++         + +       P  + + + 
Sbjct: 74  HSFYNLSKVTHIEIRNTR---NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYST 129

Query: 149 TLLTDMSLNNNLLSGEIP-DAFQSLTG-LINLDLSSNNLSGELPPSLENLSQLTTLHLQN 206
            +   + + +N     IP +AFQ L    + L L +N  +  +     N ++L  ++L  
Sbjct: 130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK 188

Query: 207 NQLSGTL--DVLQDLP--LRDLNIENNLFSGPIPEKMLQ 241
           N+    +  D    +      L++     +  +P K L+
Sbjct: 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSKGLE 226

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.9 bits (143), Expect = 8e-10
 Identities = 31/142 (21%), Positives = 57/142 (40%), Gaps = 15/142 (10%)

Query: 103 SSIRVIDLSNNHIGGSIPSI----LPVTMQNFFLSDNQFSGSIPS-SLATLTLLTDMSL- 156
            S + + L   H+  +IPS     LP  +   ++S +     + S S   L+ +T + + 
Sbjct: 31  PSTQTLKLIETHLR-TIPSHAFSNLP-NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88

Query: 157 NNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPP--SLENLSQLTTLHLQNNQLSGTL- 213
           N   L+   PDA + L  L  L + +  L    P    + +      L + +N    ++ 
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIP 147

Query: 214 -DVLQDLP--LRDLNIENNLFS 232
            +  Q L      L + NN F+
Sbjct: 148 VNAFQGLCNETLTLKLYNNGFT 169

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 67.8 bits (165), Expect = 4e-12
 Identities = 26/217 (11%), Positives = 65/217 (29%), Gaps = 37/217 (17%)

Query: 489 TAKPFTTARSFTIASL-QQYTNSFSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRAS 546
           +   + T + F + S   +   +  +  ++G     +   A     G+   V        
Sbjct: 57  STSLWNTGQPFRVESELGERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTER 116

Query: 547 SQQKDDEFLE-----------------------LVNNIDRIRHANIVELKGYCAEHGQRL 583
                 + ++                        +   D ++     ++        + +
Sbjct: 117 PPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKM-IRVRLDERDM 175

Query: 584 LIYEY--------CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
            +            +  T  ++L S      +L  + R+++ L   R L  LH      +
Sbjct: 176 WVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYG---L 232

Query: 636 VHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQV 672
           VH   +  +I+LD    V ++         + +VS +
Sbjct: 233 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGASAVSPI 269

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 66.9 bits (164), Expect = 4e-12
 Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 35/172 (20%)

Query: 516 LIGAGMLGSVYRAQLPDGKL---LAVKKLDKRASSQQKDDEFLELVNNIDRIR------- 565
           ++G G +  V+ A+  D +    +AVK L    +   +D  F        R R       
Sbjct: 19  ILGFGGMSEVHLAR--DLRDHRDVAVKVLR---ADLARDPSFYL------RFRREAQNAA 67

Query: 566 ---HANIVELKGYCAEHGQRLLIY----EYCSNGTLQDMLHSDDELKNNLSWNTRIRMAL 618
              H  IV +            +     EY    TL+D++H+    +  ++    I +  
Sbjct: 68  ALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHT----EGPMTPKRAIEVIA 123

Query: 619 GAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVS 670
            A +AL + H+     I+HR+ K ANI++    AV V D G+A  I+    S
Sbjct: 124 DACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNS 172

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 67.9 bits (166), Expect = 5e-12
 Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 15/165 (9%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNI-DRIRH 566
           N+F Q  ++G G  G V   Q+   GK+ A KKL+K+   ++K +        I +++  
Sbjct: 184 NTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNS 243

Query: 567 ANIVELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR--- 622
             +V L  Y  E    L L+    + G L    H     +         R    AA    
Sbjct: 244 RFVVSLA-YAYETKDALCLVLTLMNGGDL--KFHIYHMGQAGFPEA---RAVFYAAEICC 297

Query: 623 ALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG 667
            LE LH      IV+R+ K  NILLDD   + +SD GLA  +  G
Sbjct: 298 GLEDLHRER---IVYRDLKPENILLDDHGHIRISDLGLAVHVPEG 339

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 67.1 bits (163), Expect = 5e-12
 Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 6/94 (6%)

Query: 140 SIPSSLATLTLLTDMSLNNNLLSGEIPD-AFQSLTGLINLDLSSNNLSGELPP-SLENLS 197
                L     LT++ + N      +     + L  L NL +  + L   + P +     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 198 QLTTLHLQNNQLSGTL--DVLQDLPLRDLNIENN 229
           +L+ L+L  N L  +L    +Q L L++L +  N
Sbjct: 81  RLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 62.8 bits (152), Expect = 1e-10
 Identities = 19/103 (18%), Positives = 29/103 (28%), Gaps = 7/103 (6%)

Query: 156 LNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPP-SLENLSQLTTLHLQNNQLSG-TL 213
             +  L             L  L + +      L    L  L +L  L +  + L     
Sbjct: 16  TRDGALD--SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP 73

Query: 214 DVLQDLP-LRDLNIENNLFSG--PIPEKMLQIPNFRKDGNPFN 253
           D     P L  LN+  N          + L +      GNP +
Sbjct: 74  DAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 66.8 bits (163), Expect = 5e-12
 Identities = 35/197 (17%), Positives = 60/197 (30%), Gaps = 45/197 (22%)

Query: 517 IGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNID---RIRHANIVEL 572
           IG G  G V  A +     + A+K ++K    Q    +   +   +    ++ H NI  L
Sbjct: 34  IGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARL 93

Query: 573 KGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALG------------- 619
                +     L+ E C  G L D L+   +          ++  +              
Sbjct: 94  YEVYEDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGS 153

Query: 620 ----------------AAR-------ALEYLHEICQPPIVHRNFKSANILL--DDDLAVS 654
                            +        AL YLH      I HR+ K  N L   +    + 
Sbjct: 154 IHGFRESLDFVQREKLISNIMRQIFSALHYLHNQ---GICHRDIKPENFLFSTNKSFEIK 210

Query: 655 VSDCGLAPLISSGSVSQ 671
           + D GL+      +  +
Sbjct: 211 LVDFGLSKEFYKLNNGE 227

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 68.0 bits (166), Expect = 5e-12
 Identities = 44/239 (18%), Positives = 80/239 (33%), Gaps = 37/239 (15%)

Query: 441 MMMMPPPPPPPPPPPPPPPPPPPP-----PVVEKVIVKPIVPAEGTAVKTSTKTAKPFTT 495
           ++ +P  P   P       P  P          + + +     +G +         P++ 
Sbjct: 9   LVEIPRAPDIDPLEALMTNPVVPESKRFCWNCGRPVGRSDSETKGASEGWCPYCGSPYSF 68

Query: 496 ARSFTIASL--QQYTNSFSQENLIGAGMLGSVYRA--QLPDGKLLAVKKLDKRASSQQKD 551
                   +   QY      +  I  G LG +Y A  +  +G+ + +K L    S    D
Sbjct: 69  LPQLNPGDIVAGQYE----VKGCIAHGGLGWIYLALDRNVNGRPVVLKGL--VHSG---D 119

Query: 552 DEFLELVN----NIDRIRHANIVEL--KGYCAEHGQRLLIY---EYCSNGTLQDMLHSDD 602
            E   +       +  + H +IV++       +     + Y   EY    +L+       
Sbjct: 120 AEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSK---- 175

Query: 603 ELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
                L     I   L    AL YLH I    +V+ + K  NI+L ++  + + D G  
Sbjct: 176 --GQKLPVAEAIAYLLEILPALSYLHSI---GLVYNDLKPENIMLTEE-QLKLIDLGAV 228

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 66.6 bits (163), Expect = 5e-12
 Identities = 44/169 (26%), Positives = 66/169 (39%), Gaps = 39/169 (23%)

Query: 516 LIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDR-------IRHA 567
            +G G  G V  A      + +AVK +D            ++   NI +       + H 
Sbjct: 14  TLGEGAYGEVQLAVNRVTEEAVAVKIVDM--------KRAVDCPENIKKEICINKMLNHE 65

Query: 568 NIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR----- 622
           N+V+  G+  E   + L  EYCS G L D +               I M    A+     
Sbjct: 66  NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEP------------DIGMPEPDAQRFFHQ 113

Query: 623 ---ALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
               + YLH I    I HR+ K  N+LLD+   + +SD GLA +    +
Sbjct: 114 LMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNN 159

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 66.6 bits (163), Expect = 6e-12
 Identities = 40/162 (24%), Positives = 58/162 (35%), Gaps = 16/162 (9%)

Query: 517 IGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNN-ID---RIRHANIVE 571
           +G+G    V +  +   G   A K + KR S   +     E +   +    ++ H NI+ 
Sbjct: 20  LGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIIT 79

Query: 572 LKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEIC 631
           L          +LI E  S G L D L      K +LS              + YLH   
Sbjct: 80  LHDVYENRTDVVLILELVSGGELFDFLAQ----KESLSEEEATSFIKQILDGVNYLHTKK 135

Query: 632 QPPIVHRNFKSANILL----DDDLAVSVSDCGLAPLISSGSV 669
              I H + K  NI+L         + + D GLA  I  G  
Sbjct: 136 ---IAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVE 174

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 66.1 bits (162), Expect = 6e-12
 Identities = 39/162 (24%), Positives = 58/162 (35%), Gaps = 16/162 (9%)

Query: 517 IGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNN-ID---RIRHANIVE 571
           +G+G    V +  +   G   A K + KR S   +     E +   +    ++ H N++ 
Sbjct: 20  LGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVIT 79

Query: 572 LKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEIC 631
           L          +LI E  S G L D L      K +LS              + YLH   
Sbjct: 80  LHDVYENRTDVVLILELVSGGELFDFLAQ----KESLSEEEATSFIKQILDGVNYLHTKK 135

Query: 632 QPPIVHRNFKSANILL----DDDLAVSVSDCGLAPLISSGSV 669
              I H + K  NI+L         + + D GLA  I  G  
Sbjct: 136 ---IAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVE 174

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 65.7 bits (161), Expect = 7e-12
 Identities = 42/166 (25%), Positives = 63/166 (37%), Gaps = 24/166 (14%)

Query: 517 IGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNN-ID---RIRHANIVE 571
           +G+G    V +  Q   GK  A K + KR  S  +     E +   ++    IRH NI+ 
Sbjct: 13  LGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIIT 72

Query: 572 LKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR----ALEYL 627
           L          +LI E  S G L D L   + L            A    +     + YL
Sbjct: 73  LHDIFENKTDVVLILELVSGGELFDFLAEKESLTE--------DEATQFLKQILDGVHYL 124

Query: 628 HEICQPPIVHRNFKSANILL----DDDLAVSVSDCGLAPLISSGSV 669
           H      I H + K  NI+L      +  + + D G+A  I +G+ 
Sbjct: 125 HSKR---IAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNE 167

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 63.2 bits (154), Expect = 9e-12
 Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 6/110 (5%)

Query: 124 PVTMQNFFLSDNQFS-GSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSS 182
           P  ++   L + + + G I    A    L  +SL N  L   + +    L  L  L+LS 
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSE 80

Query: 183 NNLSGELPPSLENLSQLTTLHLQNNQLS--GTLDVLQDLP-LRDLNIENN 229
           N + G L    E L  LT L+L  N+L    TL+ L+ L  L+ L++ N 
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.4 bits (131), Expect = 9e-09
 Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 33/156 (21%)

Query: 77  NASDIIAIILNGANLGGELGENLGA-FSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDN 135
             + +  ++L+         E L A F ++  + L N      + S+             
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV----GLISV------------- 64

Query: 136 QFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLS--GELPPSL 193
                  S+L  L  L  + L+ N + G +    + L  L +L+LS N L     L P L
Sbjct: 65  -------SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP-L 116

Query: 194 ENLSQLTTLHLQNNQLSGTLD----VLQDLP-LRDL 224
           + L  L +L L N +++   D    V + LP L  L
Sbjct: 117 KKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 65.9 bits (161), Expect = 9e-12
 Identities = 41/192 (21%), Positives = 73/192 (38%), Gaps = 29/192 (15%)

Query: 492 PFTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQK 550
           P         A   +Y+  +S  + +G+G  G V+ A      K + VK + K    +  
Sbjct: 7   PKAVELEGLAACEGEYSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDC 66

Query: 551 DDEFLEL------VNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDEL 604
             E  +L      +  + R+ HANI+++       G   L+ E   +G          +L
Sbjct: 67  WIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQGFFQLVMEKHGSGL---------DL 117

Query: 605 KNNLSWNTRIRMALGAAR--------ALEYLHEICQPPIVHRNFKSANILLDDDLAVSVS 656
              +  + R  +    A         A+ YL       I+HR+ K  NI++ +D  + + 
Sbjct: 118 FAFIDRHPR--LDEPLASYIFRQLVSAVGYLRLKD---IIHRDIKDENIVIAEDFTIKLI 172

Query: 657 DCGLAPLISSGS 668
           D G A  +  G 
Sbjct: 173 DFGSAAYLERGK 184

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 62.4 bits (152), Expect = 9e-12
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 14/120 (11%)

Query: 132 LSDNQFS-GSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELP 190
           L +++ + G +         L  +S  N  L+  I +    L  L  L+LS N +SG L 
Sbjct: 24  LDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELSDNRVSGGLE 81

Query: 191 PSLENLSQLTTLHLQNNQLS--GTLDVLQDLP-LRDLNIENNLFSGPIPEKMLQIPNFRK 247
              E    LT L+L  N++    T++ L+ L  L+ L++ N      +      + ++R+
Sbjct: 82  VLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC----EV----TNLNDYRE 133

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 28/134 (20%)

Query: 77  NASDIIAIILNGANLG-GELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDN 135
             SD+  ++L+ +    G+L      F  +  +   N      + SI             
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV----GLTSI------------- 57

Query: 136 QFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLS--GELPPSL 193
                  ++L  L  L  + L++N +SG +    +    L +L+LS N +     + P L
Sbjct: 58  -------ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP-L 109

Query: 194 ENLSQLTTLHLQNN 207
           + L  L +L L N 
Sbjct: 110 KKLENLKSLDLFNC 123

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 64.5 bits (158), Expect = 1e-11
 Identities = 39/163 (23%), Positives = 68/163 (41%), Gaps = 25/163 (15%)

Query: 516 LIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLEL-VNNIDRIRHANIVELK 573
            +G G  G V   +    G  +AVK L+++          ++  + N+   RH +I++L 
Sbjct: 18  TLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLY 77

Query: 574 GYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR--------ALE 625
              +      ++ EY S G L D +                R+    AR        A++
Sbjct: 78  QVISTPTDFFMVMEYVSGGELFDYICKHG------------RVEEMEARRLFQQILSAVD 125

Query: 626 YLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
           Y H      +VHR+ K  N+LLD  +   ++D GL+ ++S G 
Sbjct: 126 YCHRHM---VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE 165

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 36/171 (21%), Positives = 62/171 (36%), Gaps = 31/171 (18%)

Query: 514 ENLIGAGMLGSVYRAQLPDGKL---LAVKKLDKRASSQQKDDEFLELVNNIDRIR----- 565
             L+G G +G VY A+  D      +A+K + +  SS   D  F        R++     
Sbjct: 39  RRLVGRGGMGDVYEAE--DTVRERIVALKLMSETLSS---DPVFRT------RMQREART 87

Query: 566 -----HANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGA 620
                  ++V +  +    GQ  +     +   L  ML         L+    + +    
Sbjct: 88  AGRLQEPHVVPIHDFGEIDGQLYVDMRLINGVDLAAMLRRQ----GPLAPPRAVAIVRQI 143

Query: 621 ARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQ 671
             AL+  H        HR+ K  NIL+  D    + D G+A   +   ++Q
Sbjct: 144 GSALDAAHAA---GATHRDVKPENILVSADDFAYLVDFGIASATTDEKLTQ 191

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 37/171 (21%)

Query: 516 LIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDR-------IRHA 567
           L+G G  G V            AVK L K+   +  + E      N+ +       +RH 
Sbjct: 12  LLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGE-----ANVKKEIQLLRRLRHK 66

Query: 568 NIVELKG-YCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR--- 622
           N+++L      E  Q++ ++ EYC  G +Q+ML   D +          R  +  A    
Sbjct: 67  NVIQLVDVLYNEEKQKMYMVMEYCVCG-MQEML---DSVPEK-------RFPVCQAHGYF 115

Query: 623 -----ALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
                 LEYLH      IVH++ K  N+LL     + +S  G+A  +   +
Sbjct: 116 CQLIDGLEYLHSQG---IVHKDIKPGNLLLTTGGTLKISALGVAEALHPFA 163

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 14/144 (9%)

Query: 107 VIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIP 166
           ++ L+   I  +      V  +   L   +    I +  ATL     +  ++N +  ++ 
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD 58

Query: 167 DAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLS--GTLDVLQDLP-LRD 223
             F  L  L  L +++N +        + L  LT L L NN L   G LD L  L  L  
Sbjct: 59  G-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY 117

Query: 224 LNIENNLFSGPIPEKMLQIPNFRK 247
           L I  N    P+  K     ++R 
Sbjct: 118 LCILRN----PVTNK----KHYRL 133

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 48/167 (28%), Positives = 75/167 (44%), Gaps = 36/167 (21%)

Query: 517 IGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLEL----VNNIDRIRHANIVE 571
           IG G    V  A+ +  G+ +A+K +DK     Q +   L+     V  +  + H NIV+
Sbjct: 23  IGKGNFAKVKLARHILTGREVAIKIIDK----TQLNPTSLQKLFREVRIMKILNHPNIVK 78

Query: 572 LKGY-CAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR------- 622
           L  +   E  + L LI EY S G + D L +              RM    AR       
Sbjct: 79  L--FEVIETEKTLYLIMEYASGGEVFDYLVAHG------------RMKEKEARSKFRQIV 124

Query: 623 -ALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
            A++Y H+     IVHR+ K+ N+LLD D+ + ++D G +   + G 
Sbjct: 125 SAVQYCHQKR---IVHRDLKAENLLLDADMNIKIADFGFSNEFTVGG 168

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 64.5 bits (157), Expect = 3e-11
 Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 19/163 (11%)

Query: 511 FSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNID---RIRH 566
           F + + +GAG  G V++    P G ++A K +      + K     +++  +        
Sbjct: 35  FEKISELGAGNGGVVFKVSHKPSGLVMARKLIH----LEIKPAIRNQIIRELQVLHECNS 90

Query: 567 ANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRI--RMALGAARAL 624
             IV   G     G+  +  E+   G+L      D  LK       +I  ++++   + L
Sbjct: 91  PYIVGFYGAFYSDGEISICMEHMDGGSL------DQVLKKAGRIPEQILGKVSIAVIKGL 144

Query: 625 EYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA-PLISS 666
            YL E  +  I+HR+ K +NIL++    + + D G++  LI S
Sbjct: 145 TYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS 185

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 64.2 bits (157), Expect = 3e-11
 Identities = 35/162 (21%), Positives = 59/162 (36%), Gaps = 18/162 (11%)

Query: 517 IGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHA-NIVELKG 574
           +G G    V +      G+  A K L KR   Q    E L  +  ++  +    ++ L  
Sbjct: 37  LGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHE 96

Query: 575 YCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR----ALEYLHEI 630
                 + +LI EY + G +  +     EL   +S        +   +     + YLH+ 
Sbjct: 97  VYENTSEIILILEYAAGGEIFSLC--LPELAEMVSE----NDVIRLIKQILEGVYYLHQN 150

Query: 631 CQPPIVHRNFKSANILL---DDDLAVSVSDCGLAPLISSGSV 669
               IVH + K  NILL        + + D G++  I     
Sbjct: 151 N---IVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACE 189

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 30/147 (20%), Positives = 64/147 (43%), Gaps = 9/147 (6%)

Query: 517 IGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           +G+G  G V++ +    G ++AVK++ +  + ++     ++L   +       IV+  G 
Sbjct: 33  MGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGT 92

Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELK-NNLSWNTRIRMALGAARALEYLHEICQPP 634
              +    +  E       +        +    L      +M +   +AL YL E  +  
Sbjct: 93  FITNTDVFIAMELMGTCAEKLKKRMQGPIPERILG-----KMTVAIVKALYYLKE--KHG 145

Query: 635 IVHRNFKSANILLDDDLAVSVSDCGLA 661
           ++HR+ K +NILLD+   + + D G++
Sbjct: 146 VIHRDVKPSNILLDERGQIKLCDFGIS 172

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 63.8 bits (156), Expect = 3e-11
 Identities = 34/166 (20%), Positives = 71/166 (42%), Gaps = 16/166 (9%)

Query: 503 SLQQYTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNI 561
           S++   +       +G G  G V + + +P G+++AVK++    +SQ++    ++L  ++
Sbjct: 1   SMEVKADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISM 60

Query: 562 DRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRI------R 615
             +     V   G     G   +  E             D   K  +     I      +
Sbjct: 61  RTVDCPFTVTFYGALFREGDVWICMELMDTS-------LDKFYKQVIDKGQTIPEDILGK 113

Query: 616 MALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           +A+   +ALE+LH      ++HR+ K +N+L++    V + D G++
Sbjct: 114 IAVSIVKALEHLHSKLS--VIHRDVKPSNVLINALGQVKMCDFGIS 157

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 62.0 bits (151), Expect = 4e-11
 Identities = 35/159 (22%), Positives = 63/159 (39%), Gaps = 16/159 (10%)

Query: 97  ENLGAFSSIRVIDLSNNH-----IGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLL 151
                 +    ++L         +  ++ ++     ++  LS N     I SSL+ +  L
Sbjct: 17  RKSVVATEAEKVELHGMIPPIEKMDATLSTL--KACKHLALSTNNIE-KI-SSLSGMENL 72

Query: 152 TDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLS- 210
             +SL  NL+  +I +       L  L +S N ++  L   +E L  L  L++ NN+++ 
Sbjct: 73  RILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLSG-IEKLVNLRVLYMSNNKITN 129

Query: 211 -GTLDVLQDLP-LRDLNIENNLFSGPIPEKMLQIPNFRK 247
            G +D L  L  L DL +  N       E       +R 
Sbjct: 130 WGEIDKLAALDKLEDLLLAGNPLYNDYKENN-ATSEYRI 167

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 63.9 bits (156), Expect = 4e-11
 Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 3/135 (2%)

Query: 517 IGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           IG G  GSV +    P G+++AVK++      +++    ++L   +       IV+  G 
Sbjct: 30  IGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGA 89

Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
               G   +  E  S    +   +    L + +      ++ L   +AL +L E  +  I
Sbjct: 90  LFREGDCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLK--I 147

Query: 636 VHRNFKSANILLDDD 650
           +HR+ K +NILLD  
Sbjct: 148 IHRDIKPSNILLDRS 162

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 63.4 bits (155), Expect = 5e-11
 Identities = 38/183 (20%), Positives = 65/183 (35%), Gaps = 24/183 (13%)

Query: 500 TIASLQQYTNSFSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELV 558
           T+   +   + +     +G+G    V +  +   G   A K + KR +   +     E +
Sbjct: 2   TVFRQENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDI 61

Query: 559 NN-ID---RIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRI 614
              +     I+H N++ L          +LI E  + G L D L   + L          
Sbjct: 62  EREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTE-------- 113

Query: 615 RMALGAAR----ALEYLHEICQPPIVHRNFKSANILL----DDDLAVSVSDCGLAPLISS 666
             A    +     + YLH +    I H + K  NI+L         + + D GLA  I  
Sbjct: 114 EEATEFLKQILNGVYYLHSLQ---IAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF 170

Query: 667 GSV 669
           G+ 
Sbjct: 171 GNE 173

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 63.5 bits (155), Expect = 6e-11
 Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 22/172 (12%)

Query: 513 QENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR-HANIV 570
           QE+++G G    V     L   +  AVK ++K+     +   F E V  + + + H N++
Sbjct: 17  QEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHI-RSRVFRE-VEMLYQCQGHRNVL 74

Query: 571 ELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR----ALEY 626
           EL  +  E  +  L++E    G++   +H     + + +       A    +    AL++
Sbjct: 75  ELIEFFEEEDRFYLVFEKMRGGSILSHIHK----RRHFNE----LEASVVVQDVASALDF 126

Query: 627 LHEICQPPIVHRNFKSANILL---DDDLAVSVSDCGLAPLISSGSVSQVSHN 675
           LH      I HR+ K  NIL    +    V + D  L   I           
Sbjct: 127 LHNKG---IAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPIST 175

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 64.0 bits (156), Expect = 6e-11
 Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 11/156 (7%)

Query: 517 IGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGY 575
           +G+G  G V+R  +   G++   K ++       K     E ++ ++++ H  ++ L   
Sbjct: 59  LGSGAFGVVHRCVEKATGRVFVAKFINTP-YPLDKYTVKNE-ISIMNQLHHPKLINLHDA 116

Query: 576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPI 635
             +  + +LI E+ S G L D + ++D   +       +R A      L+++HE     I
Sbjct: 117 FEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACE---GLKHMHEH---SI 170

Query: 636 VHRNFKSANILL--DDDLAVSVSDCGLAPLISSGSV 669
           VH + K  NI+       +V + D GLA  ++   +
Sbjct: 171 VHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEI 206

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 63.5 bits (155), Expect = 7e-11
 Identities = 39/179 (21%), Positives = 63/179 (35%), Gaps = 29/179 (16%)

Query: 503 SLQQYTNSFSQE----NLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLEL 557
            L + +  F+        IG G      R          AVK +DK      ++ E L  
Sbjct: 12  QLHRNSIQFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTEEIEILLR 71

Query: 558 VNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMA 617
                  +H NI+ LK    +     ++ E    G L D +      +   S     R A
Sbjct: 72  Y-----GQHPNIITLKDVYDDGKYVYVVTELMKGGELLDKILR----QKFFSE----REA 118

Query: 618 LGAAR----ALEYLHEICQPPIVHRNFKSANILL----DDDLAVSVSDCGLAPLISSGS 668
                     +EYLH      +VHR+ K +NIL      +  ++ + D G A  + + +
Sbjct: 119 SAVLFTITKTVEYLHAQG---VVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAEN 174

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 63.1 bits (154), Expect = 7e-11
 Identities = 35/175 (20%), Positives = 71/175 (40%), Gaps = 42/175 (24%)

Query: 517 IGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLEL------VNNIDRIRHANI 569
           +G+G  G V  A +    K +A+K + KR  +     E          +  + ++ H  I
Sbjct: 18  LGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCI 77

Query: 570 VELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRI----RMALGAAR--- 622
           +++K +  +     ++ E    G L D                ++    R+     +   
Sbjct: 78  IKIKNFF-DAEDYYIVLELMEGGELFD----------------KVVGNKRLKEATCKLYF 120

Query: 623 -----ALEYLHEICQPPIVHRNFKSANILL---DDDLAVSVSDCGLAPLISSGSV 669
                A++YLHE     I+HR+ K  N+LL   ++D  + ++D G + ++   S+
Sbjct: 121 YQMLLAVQYLHENG---IIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSL 172

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 62.7 bits (153), Expect = 8e-11
 Identities = 34/183 (18%), Positives = 64/183 (34%), Gaps = 55/183 (30%)

Query: 516 LIGAGMLGSVYRAQ-LPDGKLLAVKKLDKR-----------------ASSQQKDDEFLEL 557
            IG G  G V  A    D    A+K L K+                   +     +    
Sbjct: 20  EIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGP 79

Query: 558 VNNIDR-------IRHANIVELKGYCA-EHGQRLLIY---EYCSNGTLQDMLHSDDELKN 606
           +  + +       + H N+V+L      +      +Y   E  + G + ++         
Sbjct: 80  IEQVYQEIAILKKLDHPNVVKL--VEVLDDPNEDHLYMVFELVNQGPVMEVP-------- 129

Query: 607 NLSWNTRIRMALGAAR--------ALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDC 658
                T   ++   AR         +EYLH      I+HR+ K +N+L+ +D  + ++D 
Sbjct: 130 -----TLKPLSEDQARFYFQDLIKGIEYLHYQK---IIHRDIKPSNLLVGEDGHIKIADF 181

Query: 659 GLA 661
           G++
Sbjct: 182 GVS 184

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 63.7 bits (155), Expect = 8e-11
 Identities = 37/163 (22%), Positives = 67/163 (41%), Gaps = 25/163 (15%)

Query: 516 LIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLEL-VNNIDRIRHANIVELK 573
            +G G  G V   +    G  +AVK L+++          +   + N+   RH +I++L 
Sbjct: 23  TLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLY 82

Query: 574 GYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR--------ALE 625
              +      ++ EY S G L D +  +             R+    +R         ++
Sbjct: 83  QVISTPSDIFMVMEYVSGGELFDYICKNG------------RLDEKESRRLFQQILSGVD 130

Query: 626 YLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
           Y H      +VHR+ K  N+LLD  +   ++D GL+ ++S G 
Sbjct: 131 YCHRHM---VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE 170

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 61.9 bits (151), Expect = 2e-10
 Identities = 37/174 (21%), Positives = 62/174 (35%), Gaps = 42/174 (24%)

Query: 505 QQYTNSFSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDR 563
           Q Y      + L G G      +       +  AVK + KR     + +   E +  +  
Sbjct: 8   QHYDLDLKDKPL-GEGSFSICRKCVHKKSNQAFAVKIISKR----MEANTQKE-ITALKL 61

Query: 564 IR-HANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRI-------- 614
              H NIV+L     +     L+ E  + G L +                RI        
Sbjct: 62  CEGHPNIVKLHEVFHDQLHTFLVMELLNGGELFE----------------RIKKKKHFSE 105

Query: 615 RMALGAAR----ALEYLHEICQPPIVHRNFKSANILL---DDDLAVSVSDCGLA 661
             A    R    A+ ++H++    +VHR+ K  N+L    +D+L + + D G A
Sbjct: 106 TEASYIMRKLVSAVSHMHDVG---VVHRDLKPENLLFTDENDNLEIKIIDFGFA 156

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 30/189 (15%), Positives = 61/189 (32%), Gaps = 31/189 (16%)

Query: 72  QGVQCNASDIIAIILNGANLGGE----LGENLGAFSSIRVIDLSNNHIGGS----IPSIL 123
           +G+      +  + L   +L       L   L A    + + +SNN I  +    +   L
Sbjct: 135 EGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGL 194

Query: 124 PV---TMQNFFLSDNQFS----GSIPSSLATLTLLTDMSLNNNLLSGE-----IPDAFQS 171
                 ++   L     +      +   +A+   L +++L +N L         P     
Sbjct: 195 KDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHP 254

Query: 172 LTGLINLDLSSNNLSGE----LPPSLENLSQLTTLHLQNNQLSGT-----LDVLQD--LP 220
            + L  L +    ++ +    L   L     L  L L  N+L         + L +    
Sbjct: 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ 314

Query: 221 LRDLNIENN 229
           L  L +++ 
Sbjct: 315 LESLWVKSC 323

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 60.4 bits (147), Expect = 9e-10
 Identities = 34/153 (22%), Positives = 55/153 (35%), Gaps = 23/153 (15%)

Query: 103 SSIRVIDLSNNHIG-GSIPSILPV--TMQNFFLSDNQFS----GSIPSSLATLTLLTDMS 155
             I+ +D+    +       +LP+    Q   L D   +      I S+L     L +++
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 156 LNNNLLSGE----IPDAFQSL-TGLINLDLSSNNLSGE----LPPSLENLSQLTTLHLQN 206
           L +N L       +    Q+    +  L L +  L+G     L  +L  L  L  LHL +
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 207 NQLSGT-----LDVLQD--LPLRDLNIENNLFS 232
           N L         + L D    L  L +E    S
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS 155

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 57.3 bits (139), Expect = 1e-08
 Identities = 30/178 (16%), Positives = 62/178 (34%), Gaps = 31/178 (17%)

Query: 86  LNGANLGGE----LGENLGAFSSIRVIDLSNNHIGGS-IPSILPV------TMQNFFLSD 134
           +    +  +    L   L A  S++ + L+ N +G      +          +++ ++  
Sbjct: 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322

Query: 135 NQFSG----SIPSSLATLTLLTDMSLNNNLLSGE----IPDAFQS-LTGLINLDLSSNNL 185
             F+        S LA    L ++ ++NN L       +        + L  L L+  ++
Sbjct: 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382

Query: 186 SGE----LPPSLENLSQLTTLHLQNNQLSGT-----LDVLQD--LPLRDLNIENNLFS 232
           S      L  +L     L  L L NN L        ++ ++     L  L + +  +S
Sbjct: 383 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 26/152 (17%)

Query: 104 SIRVIDLSNNHIG----GSIPSILPV--TMQNFFLSDNQFSGSIPSSLATLTL-----LT 152
            I+ + L N  +     G + S L    T+Q   LSDN    +    L    L     L 
Sbjct: 86  KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145

Query: 153 DMSLNNNLLSGE----IPDAFQSLTGLINLDLSSNNLSGE----LPPSLE-NLSQLTTLH 203
            + L    LS      +    ++      L +S+N+++      L   L+ +  QL  L 
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK 205

Query: 204 LQNNQLSGT-----LDVLQDLP-LRDLNIENN 229
           L++  ++         ++     LR+L + +N
Sbjct: 206 LESCGVTSDNCRDLCGIVASKASLRELALGSN 237

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 33/160 (20%), Positives = 54/160 (33%), Gaps = 26/160 (16%)

Query: 99  LGAFSSIRVIDLSNNHIG----GSIPSILPV--TMQNFFLSDNQFSGSIPSSLATL---- 148
           L      +V+ L +  +       I S L V   +    L  N+        +       
Sbjct: 24  LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83

Query: 149 -TLLTDMSLNNNLLSGE----IPDAFQSLTGLINLDLSSNNLSGE-----LPPSLENLSQ 198
              +  +SL N  L+G     +    ++L  L  L LS N L            L+   +
Sbjct: 84  SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR 143

Query: 199 LTTLHLQNNQLSGT-----LDVLQDLP-LRDLNIENNLFS 232
           L  L L+   LS         VL+  P  ++L + NN  +
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 60.7 bits (148), Expect = 4e-10
 Identities = 46/188 (24%), Positives = 76/188 (40%), Gaps = 18/188 (9%)

Query: 477 PAEGTAVKTSTKTAKPFTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQL-PDGKL 535
            AE      S + A+P    R             F    ++G G   +V  A+     + 
Sbjct: 5   AAEPRPGAGSLQHAQPPPQPRKKRP-------EDFKFGKILGEGSFSTVVLARELATSRE 57

Query: 536 LAVKKLDKRASSQQKDDEFLELVNNI-DRIRHANIVELKGYCAEHGQRL-LIYEYCSNGT 593
            A+K L+KR   ++    ++    ++  R+ H   V+L  +  +  ++L     Y  NG 
Sbjct: 58  YAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLY-FTFQDDEKLYFGLSYAKNGE 116

Query: 594 LQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAV 653
           L   +             TR   A     ALEYLH      I+HR+ K  NILL++D+ +
Sbjct: 117 LLKYIRKIGSFDETC---TRFYTA-EIVSALEYLHGK---GIIHRDLKPENILLNEDMHI 169

Query: 654 SVSDCGLA 661
            ++D G A
Sbjct: 170 QITDFGTA 177

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 60.7 bits (148), Expect = 4e-10
 Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 18/159 (11%)

Query: 517 IGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNID---RIRHANIVEL 572
           +G G  G V+R  +    K    K +  +      D   ++    I      RH NI+ L
Sbjct: 13  LGRGEFGIVHRCVETSSKKTYMAKFVKVKG----TDQVLVK--KEISILNIARHRNILHL 66

Query: 573 KGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQ 632
                   + ++I+E+ S   + + +++     N     + +        AL++LH    
Sbjct: 67  HESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCE---ALQFLHSH-- 121

Query: 633 PPIVHRNFKSANILL--DDDLAVSVSDCGLAPLISSGSV 669
             I H + +  NI+        + + + G A  +  G  
Sbjct: 122 -NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDN 159

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 60.4 bits (147), Expect = 6e-10
 Identities = 41/190 (21%), Positives = 66/190 (34%), Gaps = 50/190 (26%)

Query: 505 QQYTNSFSQENLIGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDR 563
             Y    S++ L G G+ G V        G+  A+K L     ++Q+ D   +       
Sbjct: 28  DDYQ--LSKQVL-GLGVNGKVLECFHRRTGQKCALKLLYDSPKARQEVDHHWQASG---- 80

Query: 564 IRHANIVELKGYC--AEHGQR--LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRI----- 614
               +IV +        HG+R  L+I E    G L                  RI     
Sbjct: 81  --GPHIVCILDVYENMHHGKRCLLIIMECMEGGELFS----------------RIQERGD 122

Query: 615 -----RMALGAAR----ALEYLHEICQPPIVHRNFKSANILL---DDDLAVSVSDCGLAP 662
                R A    R    A+++LH      I HR+ K  N+L    + D  + ++D G A 
Sbjct: 123 QAFTEREAAEIMRDIGTAIQFLHSHN---IAHRDVKPENLLYTSKEKDAVLKLTDFGFAK 179

Query: 663 LISSGSVSQV 672
             +  ++   
Sbjct: 180 ETTQNALQTP 189

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 22/138 (15%)

Query: 95  LGENLGAFSSIRVIDLSNNHIG-----GSIPSILPV--TMQNFFLSDNQFSG----SIPS 143
             +   +   +  + +  N I        +   L     ++   L DN F+     ++  
Sbjct: 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238

Query: 144 SLATLTLLTDMSLNNNLLSGE----IPDAFQSL--TGLINLDLSSNNLSGE----LPPSL 193
           +L +   L ++ LN+ LLS      + DAF  L   GL  L L  N +  +    L   +
Sbjct: 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298

Query: 194 -ENLSQLTTLHLQNNQLS 210
            E +  L  L L  N+ S
Sbjct: 299 DEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 30/184 (16%), Positives = 56/184 (30%), Gaps = 30/184 (16%)

Query: 97  ENLGAFSSIRVIDLSNNHIGG----SIPSILPV--TMQNFFLSDNQF-----SGSIPSSL 145
           +       +R I    N +                 +    +  N          +   L
Sbjct: 153 KKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL 212

Query: 146 ATLTLLTDMSLNNNLLSGE----IPDAFQSLTGLINLDLSSNNLSGE----LPPSLENLS 197
           A    L  + L +N  +      +  A +S   L  L L+   LS      +  +   L 
Sbjct: 213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE 272

Query: 198 --QLTTLHLQNNQLS--GTLDVLQDLP-----LRDLNIENNLFS--GPIPEKMLQIPNFR 246
              L TL LQ N++       +   +      L  L +  N FS    + +++ ++ + R
Sbjct: 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTR 332

Query: 247 KDGN 250
             G 
Sbjct: 333 GRGE 336

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 29/180 (16%), Positives = 55/180 (30%), Gaps = 39/180 (21%)

Query: 77  NASDIIAIILNGANLGGE----LGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFL 132
               +  I+L+G  +G E    L EN+ +   + + + S+   G     I          
Sbjct: 30  EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR----- 84

Query: 133 SDNQFSGSIPSSLATLTLLTDMSLNNNLLSGE----IPDAFQSLTGLINLDLSSNNLSGE 188
                   +  +L     L  + L++N         + D     T L +L L +N L  +
Sbjct: 85  -------LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ 137

Query: 189 -------------LPPSLENLSQLTTLHLQNNQLS--GTL---DVLQDLP-LRDLNIENN 229
                        +    +N   L ++    N+L            Q    L  + +  N
Sbjct: 138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN 197

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 28/131 (21%), Positives = 47/131 (35%), Gaps = 24/131 (18%)

Query: 104 SIRVIDLSNNHIGG----SIPSILPV--TMQNFFLSDNQFSG----SIPSSLATLTLLTD 153
           SI    L  + I      S+ ++L    +++   LS N         +  ++A+   L  
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 154 MSLNNN---LLSGEIPDAFQSL-------TGLINLDLSSNNLSGE----LPPSLENLSQL 199
              ++     +  EIP+A + L         L  + LS N         L   L   + L
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 200 TTLHLQNNQLS 210
             L+L NN L 
Sbjct: 125 EHLYLHNNGLG 135

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 15/128 (11%)

Query: 94  ELGEN----LGAF---SSIRVIDLSNNHIGGSIPS---ILPVTMQNFFLSDNQFSGSIPS 143
            LG N    + A    +++  + L+ N +  S+P+        ++   L +NQ   S+P 
Sbjct: 69  ALGGNKLHDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPD 126

Query: 144 SL-ATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSL-ENLSQLTT 201
            +   LT LT ++L +N L       F  LT L  LDLS N L   LP  + + L+QL  
Sbjct: 127 GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKD 185

Query: 202 LHLQNNQL 209
           L L  NQL
Sbjct: 186 LRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 46/138 (33%), Positives = 62/138 (44%), Gaps = 11/138 (7%)

Query: 103 SSIRVIDLSNNHIGGSIPSI-LPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLL 161
           +SI  I  +N+ I  S+  I     ++   L  N+    I + L  LT LT + L  N L
Sbjct: 41  NSIDQIIANNSDIK-SVQGIQYLPNVRYLALGGNKLH-DISA-LKELTNLTYLILTGNQL 97

Query: 162 SGEIPDAFQSLTGLINLDLSSNNLSGELPPSL-ENLSQLTTLHLQNNQL----SGTLDVL 216
                  F  LT L  L L  N L   LP  + + L+ LT L+L +NQL     G  D L
Sbjct: 98  QSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL 156

Query: 217 QDLPLRDLNIENNLFSGP 234
            +L   DL+  N L S P
Sbjct: 157 TNLTELDLS-YNQLQSLP 173

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 11/117 (9%)

Query: 100 GAF---SSIRVIDLSNNHIGGSIPS---ILPVTMQNFFLSDNQFSGSIPSSL-ATLTLLT 152
           G F   ++++ + L  N +  S+P         +    L+ NQ   S+P  +   LT LT
Sbjct: 103 GVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLT 160

Query: 153 DMSLNNNLLSGEIPD-AFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQ 208
           ++ L+ N L   +P+  F  LT L +L L  N L        + L+ L  + L +N 
Sbjct: 161 ELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 59.1 bits (144), Expect = 1e-09
 Identities = 34/165 (20%), Positives = 66/165 (40%), Gaps = 30/165 (18%)

Query: 509 NSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNID----- 562
             + +   IG G  G V++ +    G+++A+KK          + E   ++  I      
Sbjct: 3   EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKF--------LESEDDPVIKKIALREIR 54

Query: 563 ---RIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNT---RIRM 616
              +++H N+V L        +  L++EYC       +LH  D  +  +  +        
Sbjct: 55  MLKQLKHPNLVNLLEVFRRKRRLHLVFEYCD----HTVLHELDRYQRGVPEHLVKSITWQ 110

Query: 617 ALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
            L   +A+ + H+      +HR+ K  NIL+     + + D G A
Sbjct: 111 TL---QAVNFCHKHN---CIHRDVKPENILITKHSVIKLCDFGFA 149

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 58.4 bits (142), Expect = 2e-09
 Identities = 34/165 (20%), Positives = 65/165 (39%), Gaps = 30/165 (18%)

Query: 509 NSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNI------ 561
             +    L+G G  G V + +    G+++A+KK          + +  ++V  I      
Sbjct: 25  EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKF--------LESDDDKMVKKIAMREIK 76

Query: 562 --DRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNT---RIRM 616
              ++RH N+V L   C +  +  L++E+        +L   +   N L +      +  
Sbjct: 77  LLKQLRHENLVNLLEVCKKKKRWYLVFEFVD----HTILDDLELFPNGLDYQVVQKYLFQ 132

Query: 617 ALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
            +     + + H      I+HR+ K  NIL+     V + D G A
Sbjct: 133 II---NGIGFCHSHN---IIHRDIKPENILVSQSGVVKLCDFGFA 171

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 26/163 (15%)

Query: 516 LIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLEL-VNNIDRIRHANIVELK 573
            +G G  G V  A      + +A+K + ++   +      +E  ++ +  +RH +I++L 
Sbjct: 16  TLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLY 75

Query: 574 GYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR--------ALE 625
                    +++ EY   G L D +                RM     R        A+E
Sbjct: 76  DVITTPTDIVMVIEYA-GGELFDYIVEKK------------RMTEDEGRRFFQQIICAIE 122

Query: 626 YLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
           Y H      IVHR+ K  N+LLDD+L V ++D GL+ +++ G+
Sbjct: 123 YCHRHK---IVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGN 162

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 29/159 (18%)

Query: 517 IGAGMLGSVYRA-QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKG- 574
           +G G+ G V +       +  A+K L     ++++ +               +IV +   
Sbjct: 26  LGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQ------CPHIVRIVDV 79

Query: 575 YCAEHGQRLLIY---EYCSNGTLQDMLHSDDELKNNLSWNTR-----IRMALGAARALEY 626
           Y   +  R  +    E    G L   +      + + ++  R     ++       A++Y
Sbjct: 80  YENLYAGRKCLLIVMECLDGGELFSRIQD----RGDQAFTEREASEIMKSIGE---AIQY 132

Query: 627 LHEICQPPIVHRNFKSANILL---DDDLAVSVSDCGLAP 662
           LH I    I HR+ K  N+L      +  + ++D G A 
Sbjct: 133 LHSIN---IAHRDVKPENLLYTSKRPNAILKLTDFGFAK 168

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 57.6 bits (139), Expect = 5e-09
 Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 511 FSQENL-----IGAGMLGSVYRAQL------PDGKLLAVKKLDKRASSQQKDDEFLELVN 559
           F ++ L     +G G  G V  A           + +AVK L + A+  +      EL  
Sbjct: 19  FPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKI 78

Query: 560 NIDRIRHANIVELKGYCAEHGQRL-LIYEYCSNGTLQDMLHS 600
            I    H N+V L G C + G  L +I E+C  G L   L S
Sbjct: 79  LIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRS 120

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 35/169 (20%), Positives = 62/169 (36%), Gaps = 32/169 (18%)

Query: 516 LIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELV----NNIDRIRHA--N 568
           L+G+G  GSVY    + D   +A+K ++K   S   +      V      + ++      
Sbjct: 50  LLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSG 109

Query: 569 IVELKGYCAEHGQRLLIYEYCSN-GTLQDMLHSDDELKNNLSWNTRIRMALGAAR----- 622
           ++ L  +       +LI E       L D +     L+  L            AR     
Sbjct: 110 VIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEEL------------ARSFFWQ 157

Query: 623 ---ALEYLHEICQPPIVHRNFKSANILLD-DDLAVSVSDCGLAPLISSG 667
              A+ + H      ++HR+ K  NIL+D +   + + D G   L+   
Sbjct: 158 VLEAVRHCHNCG---VLHRDIKDENILIDLNRGELKLIDFGSGALLKDT 203

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 57.5 bits (139), Expect = 7e-09
 Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 34/165 (20%)

Query: 517 IGAGMLGSVYRAQ---LPDGKLLAVKKLDK--RASSQQKDDEFL-ELVNNIDRIRHANIV 570
           +G G  G VY+A+     D K  A+K+++    + S  ++   L EL       +H N++
Sbjct: 29  VGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISMSACREIALLREL-------KHPNVI 81

Query: 571 ELKGYCAEHGQRL--LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAA------- 621
            L+     H  R   L+++Y       D+ H     + + +    +++  G         
Sbjct: 82  SLQKVFLSHADRKVWLLFDYAE----HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQI 137

Query: 622 -RALEYLHEICQPPIVHRNFKSANILLDDDL----AVSVSDCGLA 661
              + YLH      ++HR+ K ANIL+  +      V ++D G A
Sbjct: 138 LDGIHYLHANW---VLHRDLKPANILVMGEGPERGRVKIADMGFA 179

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 56.7 bits (137), Expect = 7e-09
 Identities = 29/223 (13%), Positives = 56/223 (25%), Gaps = 50/223 (22%)

Query: 444 MPPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTTARSFTIAS 503
           +       P      PP     V    I                           + +  
Sbjct: 1   IAFDALREPDRESSAPPDDVQLVPGARIA-----------------------NGRYRL-- 35

Query: 504 LQQYTNSFSQENLIGAGMLGSVYRAQLPDGKL---LAVKKLDKR-ASSQQKDDEFLELVN 559
                         G       ++A   D  L   +A+  +D +         E L    
Sbjct: 36  ----------LIFHGGVPPLQFWQAL--DTALDRQVALTFVDPQGVLPDDVLQETLSRTL 83

Query: 560 NIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALG 619
            + RI    +  +          L++ E+   G+LQ++  +      + S    IR    
Sbjct: 84  RLSRIDKPGVARVLDVVHTRAGGLVVAEWIRGGSLQEVADT------SPSPVGAIRAMQS 137

Query: 620 AARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAP 662
            A A +  H      +       + + +  D  V ++     P
Sbjct: 138 LAAAADAAHRA---GVALSIDHPSRVRVSIDGDVVLAYPATMP 177

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 57.7 bits (139), Expect = 9e-09
 Identities = 48/316 (15%), Positives = 90/316 (28%), Gaps = 21/316 (6%)

Query: 351 RGEVDRIFKRHQVGAFRGNNREEARDNGTLALPTNQMEKDASVKPKEDHRSEMRRMGAIP 410
            G  D   K   +   +  ++++ +   +   P         +K  +  R     +    
Sbjct: 190 NGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWD 249

Query: 411 HAQNEQERNKQRMSTIPRRDDHEIDMSSLDMMMMPPPPPPPPPPPPPPPPPPPPPVVEKV 470
                             +         L           P PP             E+ 
Sbjct: 250 LTSRNDFMGSLSFGISELQKAGVDGWFKLLSQEEGEYFNVPVPPEGSEGNEELRQKFERA 309

Query: 471 IVKPIVPAEGTAVKTSTKTAKPFTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQL 530
            +     A       +              +         F+   ++G G  G V  ++ 
Sbjct: 310 KIGQGTKAPEEKTANTISKFDNNGNRDRMKL-------TDFNFLMVLGKGSFGKVMLSER 362

Query: 531 PD-GKLLAVKKLDKRASSQQKDDEFLELVNNI--DRIRHANIVELKGYCAEHGQRL-LIY 586
               +L AVK L K    Q  D E   +   +     +   + +L   C +   RL  + 
Sbjct: 363 KGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLH-SCFQTMDRLYFVM 421

Query: 587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRM-ALGAARALEYLHEICQPPIVHRNFKSANI 645
           EY + G L  M H     +            A   A  L +L       I++R+ K  N+
Sbjct: 422 EYVNGGDL--MYHIQQVGRFKEP---HAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNV 473

Query: 646 LLDDDLAVSVSDCGLA 661
           +LD +  + ++D G+ 
Sbjct: 474 MLDSEGHIKIADFGMC 489

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 40/165 (24%), Positives = 62/165 (37%), Gaps = 31/165 (18%)

Query: 516 LIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLEL-VNNIDRIRHANIVELK 573
            IG+G  G     +     +L+AVK +++        DE ++  + N   +RH NIV  K
Sbjct: 27  DIGSGNFGVARLMRDKLTKELVAVKYIER----GAAIDENVQREIINHRSLRHPNIVRFK 82

Query: 574 GYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR--------ALE 625
                     +I EY S G L + + +              R +   AR         + 
Sbjct: 83  EVILTPTHLAIIMEYASGGELYERICN------------AGRFSEDEARFFFQQLLSGVS 130

Query: 626 YLHEICQPPIVHRNFKSANILLDDDLA--VSVSDCGLAPLISSGS 668
           Y H +    I HR+ K  N LLD   A  + + D G +      S
Sbjct: 131 YCHSMQ---ICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHS 172

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 55.3 bits (134), Expect = 2e-08
 Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 37/168 (22%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDE------------FLE 556
             + +   +G G  G VY+A+   G+++A+K++         +DE              E
Sbjct: 21  EKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRI-----RLDAEDEGIPSTAIREISLLKE 75

Query: 557 LVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTR--- 613
           L        H NIV L           L++E+      +D+    DE K  L  +     
Sbjct: 76  L-------HHPNIVSLIDVIHSERCLTLVFEFME----KDLKKVLDENKTGLQDSQIKIY 124

Query: 614 IRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           +   L   R + + H+     I+HR+ K  N+L++ D A+ ++D GLA
Sbjct: 125 LYQLL---RGVAHCHQHR---ILHRDLKPQNLLINSDGALKLADFGLA 166

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 42/247 (17%), Positives = 68/247 (27%), Gaps = 76/247 (30%)

Query: 442 MMMPPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTTARSFTI 501
           M+  P   PP PP  P PPP                      K        +        
Sbjct: 2   MLTKPLQGPPAPPGTPTPPP--------------------GGKDREAFEAEYRLGP---- 37

Query: 502 ASLQQYTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLE---- 556
                         L+G G  G+V+    L D   +A+K + +                 
Sbjct: 38  --------------LLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPL 83

Query: 557 ------LVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGT-LQDMLHSDDELKNNLS 609
                  V       H  ++ L  +       +L+ E       L D +           
Sbjct: 84  EVALLWKVGAGGG--HPGVIRLLDWFETQEGFMLVLERPLPAQDLFDYITE--------- 132

Query: 610 WNTRIRMALGAAR--------ALEYLHEICQPPIVHRNFKSANILLD-DDLAVSVSDCGL 660
              +  +  G +R        A+++ H      +VHR+ K  NIL+D       + D G 
Sbjct: 133 ---KGPLGEGPSRCFFGQVVAAIQHCHSRG---VVHRDIKDENILIDLRRGCAKLIDFGS 186

Query: 661 APLISSG 667
             L+   
Sbjct: 187 GALLHDE 193

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 33/90 (36%), Positives = 45/90 (50%)

Query: 118 SIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLIN 177
           S+P+ +P T Q  +L DNQ +   P     LT LT + L+NN L+      F  LT L  
Sbjct: 23  SVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ 82

Query: 178 LDLSSNNLSGELPPSLENLSQLTTLHLQNN 207
           L L+ N L      + +NL  LT + L NN
Sbjct: 83  LSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 55.3 bits (134), Expect = 3e-08
 Identities = 39/241 (16%), Positives = 71/241 (29%), Gaps = 88/241 (36%)

Query: 445 PPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTTARSFTIASL 504
                      P        P    +                                  
Sbjct: 8   HMGTLEAQTQGPGSMSVSAAPSATSI---------------------------------- 33

Query: 505 QQYTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDE---------- 553
               + + +   +G G  G VY+A      + +A+K++       + ++E          
Sbjct: 34  ----DRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRI-----RLEHEEEGVPGTAIREV 84

Query: 554 --FLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWN 611
               EL       +H NI+ELK     + +  LI+EY            +++LK  +  N
Sbjct: 85  SLLKEL-------QHRNIIELKSVIHHNHRLHLIFEYA-----------ENDLKKYMDKN 126

Query: 612 TRIRMALGAA------RALEYLHEICQPPIVHRNFKSANILLDDDLAVS-----VSDCGL 660
             + M +  +        + + H       +HR+ K  N+LL    A       + D GL
Sbjct: 127 PDVSMRVIKSFLYQLINGVNFCH---SRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGL 183

Query: 661 A 661
           A
Sbjct: 184 A 184

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 35/178 (19%), Positives = 69/178 (38%), Gaps = 32/178 (17%)

Query: 84  IILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSIL-------PVTMQNFFLSDNQ 136
            +  G+N    + E       +  +DLS N++       L       P ++ +  LS N 
Sbjct: 6   TLHPGSNP---VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS 62

Query: 137 FSGSIPSSLATL-----TLLTDMSLNNNLLSGE----IPDAFQSL-TGLINLDLSSNNLS 186
                   L  +       +T ++L+ N LS +    +     ++   +  LDL  N+ S
Sbjct: 63  LGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122

Query: 187 GE----LPPSLENL-SQLTTLHLQNNQLSGT-----LDVLQDLP--LRDLNIENNLFS 232
            +       +  NL + +T+L+L+ N L        + +L  +P  +  LN+  N  +
Sbjct: 123 SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 51.6 bits (124), Expect = 5e-07
 Identities = 24/148 (16%), Positives = 51/148 (34%), Gaps = 23/148 (15%)

Query: 103 SSIRVIDLSNNHIGGS----IPSIL---PVTMQNFFLSDNQFSGS----IPSSLATLTLL 151
           +S+  +DLS N +G      +  I    P  + +  L  N   G     +     +L  L
Sbjct: 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255

Query: 152 TDMSLNNNLLSGEIPD-------AFQSLTGLINLDLSSNNLSGELPPSLENLSQ-----L 199
             + L+ +++     +       AF ++  +I +D +   +       + NL +      
Sbjct: 256 QTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKA 315

Query: 200 TTLHLQNNQLSGTLDVLQDLPLRDLNIE 227
               L N  L        ++   ++  E
Sbjct: 316 DVPSLLNQCLIFAQKHQTNIEDLNIPDE 343

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 37/195 (18%), Positives = 76/195 (38%), Gaps = 34/195 (17%)

Query: 72  QGVQCNASDIIAIILNGANLGGELGENLGAF-----SSIRVIDLSNNHIGG----SIPSI 122
           Q      + + ++ L+G +LG +  + L        +++  ++LS N +       +   
Sbjct: 44  QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103

Query: 123 L---PVTMQNFFLSDNQFSGS----IPSSLATLTL-LTDMSLNNNLLSGE----IPDAFQ 170
           L   P T+    L  N FS         + + L   +T ++L  N L  +    +     
Sbjct: 104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA 163

Query: 171 SL-TGLINLDLSSNNLSGE----LPPSLENL-SQLTTLHLQNNQLSGT-----LDVLQDL 219
           ++   + +L+L  NNL+ +    L   L ++ + +T+L L  N L          +   +
Sbjct: 164 AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI 223

Query: 220 P--LRDLNIENNLFS 232
           P  +  LN+  N   
Sbjct: 224 PNHVVSLNLCLNCLH 238

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 16/90 (17%)

Query: 156 LNNNLLSGE----IPDAFQSLTGLINLDLSSNNLSGELPPSL-----ENLSQLTTLHLQN 206
           +N  L        + +      G+ +LDLS NNL       L        + +T+L+L  
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60

Query: 207 NQLSGT-----LDVLQDLP--LRDLNIENN 229
           N L        + +L  +P  +  LN+  N
Sbjct: 61  NSLGFKNSDELVQILAAIPANVTSLNLSGN 90

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 45/190 (23%), Positives = 80/190 (42%), Gaps = 19/190 (10%)

Query: 480 GTAVKTSTKTAKPFTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVK 539
                             +    + +Q   +++   +IG G  G V++A+L +   +A+K
Sbjct: 11  NGVKLNPLDDPNKVIKVLASDGKTGEQREIAYTNCKVIGNGSFGVVFQAKLVESDEVAIK 70

Query: 540 KLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRL------LIYEYCSNGT 593
           K+      Q K  +  EL   +  ++H N+V+LK +   +G +       L+ EY    T
Sbjct: 71  KV-----LQDKRFKNREL-QIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEYVPE-T 123

Query: 594 LQDMLHSDDELKNNLSWNTRIRMAL-GAARALEYLHEICQPPIVHRNFKSANILLDDDLA 652
           +        +LK  +     I++ +    R+L Y+H I    I HR+ K  N+LLD    
Sbjct: 124 VYRASRHYAKLKQTMP-MLLIKLYMYQLLRSLAYIHSIG---ICHRDIKPQNLLLDPPSG 179

Query: 653 V-SVSDCGLA 661
           V  + D G A
Sbjct: 180 VLKLIDFGSA 189

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 22/155 (14%)

Query: 516 LIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNI-DRIRHANIVELK 573
           L+G G  G V   +    G+  A+K L K     + +       N +    RH  +  LK
Sbjct: 155 LLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALK 214

Query: 574 GYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRI---RMALGAAR---ALEY 626
            Y  +   RL  + EY + G L    H        LS        R     A    AL+Y
Sbjct: 215 -YSFQTHDRLCFVMEYANGGEL--FFH--------LSRERVFSEDRARFYGAEIVSALDY 263

Query: 627 LHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           LH   +  +V+R+ K  N++LD D  + ++D GL 
Sbjct: 264 LHS--EKNVVYRDLKLENLMLDKDGHIKITDFGLC 296

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 54.9 bits (132), Expect = 3e-08
 Identities = 30/186 (16%), Positives = 52/186 (27%), Gaps = 15/186 (8%)

Query: 482 AVKTSTKTAKPFTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKL 541
           A+K      +     +                     A +     + Q    ++    + 
Sbjct: 35  AIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEEMDEIWLKDES 94

Query: 542 DKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLI-YEYCSNGTLQDML-- 598
                S     +   +               +   +     L I  + C    L+D +  
Sbjct: 95  TDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNR 154

Query: 599 ---HSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSV 655
                D E    L    +I      A A+E+LH      ++HR+ K +NI    D  V V
Sbjct: 155 RCSLEDREHGVCLHIFIQI------AEAVEFLHSKG---LMHRDLKPSNIFFTMDDVVKV 205

Query: 656 SDCGLA 661
            D GL 
Sbjct: 206 GDFGLV 211

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 54.4 bits (132), Expect = 4e-08
 Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 37/166 (22%)

Query: 511 FSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDE------------FLELV 558
           +     IG G  G VY+AQ   G+  A+KK+       +K+DE              EL 
Sbjct: 4   YHGLEKIGEGTYGVVYKAQNNYGETFALKKI-----RLEKEDEGIPSTTIREISILKEL- 57

Query: 559 NNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTR---IR 615
                 +H+NIV+L        + +L++E+      QD+    D  +  L   T    + 
Sbjct: 58  ------KHSNIVKLYDVIHTKKRLVLVFEHLD----QDLKKLLDVCEGGLESVTAKSFLL 107

Query: 616 MALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
             L     + Y H+     ++HR+ K  N+L++ +  + ++D GLA
Sbjct: 108 QLL---NGIAYCHDRR---VLHRDLKPQNLLINREGELKIADFGLA 147

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 55.0 bits (131), Expect = 4e-08
 Identities = 22/171 (12%), Positives = 55/171 (32%), Gaps = 31/171 (18%)

Query: 67  CGESWQGVQCNASDIIAIILNGANL-------GGELGENLGAFSSIRVIDLSNNHIGGS- 118
              SW        D+  ++     L          L        +++ +++ +  +  S 
Sbjct: 154 QEISW----IEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSV 209

Query: 119 IPSILPVTMQN------FFLSDNQFSGSIPSSLA------TLTLLTDMSLNNNLLSGEIP 166
           +  IL   + N      +   ++       +             L  + + +      + 
Sbjct: 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVV 269

Query: 167 DAF---QSLTGLINLDLSSNNLSGE----LPPSLENLSQLTTLHLQNNQLS 210
           + F     L  L  +D+S+  L+ E    L   ++ +  L  ++++ N LS
Sbjct: 270 EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.9 bits (105), Expect = 6e-05
 Identities = 18/144 (12%), Positives = 49/144 (34%), Gaps = 21/144 (14%)

Query: 85  ILNGANLGGELGENLGA--FSSIRVIDL---SNNHIGGSIPSILPV--------TMQNFF 131
            +    L   + E++      ++  + L     ++      ++            ++   
Sbjct: 199 EIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLG 258

Query: 132 LSDNQFSGSIPSSLAT---LTLLTDMSLNNNLLSGE----IPDAFQSLTGLINLDLSSNN 184
           + D +    +         L  L  M ++  +L+ E    + D    +  L  +++  N 
Sbjct: 259 IVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318

Query: 185 LSGELPPSLENLSQLTTLHLQNNQ 208
           LS E+   L+  S    + + ++Q
Sbjct: 319 LSDEMKKELQK-SLPMKIDVSDSQ 341

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 54.1 bits (131), Expect = 5e-08
 Identities = 37/180 (20%), Positives = 64/180 (35%), Gaps = 48/180 (26%)

Query: 509 NSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKK--LDKRASSQQKDDEFLELVN------ 559
           + +     IG G  G+VY+A+    G  +A+K   +                +       
Sbjct: 9   SRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPN-------GGGGGGGLPISTVRE 61

Query: 560 -----NIDRIRHANIVELK----GYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLS 609
                 ++   H N+V L         +   ++ L++E+            D +L+  L 
Sbjct: 62  VALLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHV-----------DQDLRTYLD 110

Query: 610 WNTRIRMALGAA--------RALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
                 +             R L++LH  C   IVHR+ K  NIL+     V ++D GLA
Sbjct: 111 KAPPPGLPAETIKDLMRQFLRGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLA 167

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 52.3 bits (126), Expect = 5e-08
 Identities = 29/90 (32%), Positives = 45/90 (50%)

Query: 118 SIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLIN 177
           S+P+ +P   Q  +L++NQ +   P     L  L  +  N+N L+      F  LT L  
Sbjct: 26  SVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQ 85

Query: 178 LDLSSNNLSGELPPSLENLSQLTTLHLQNN 207
           LDL+ N+L      + +NL  LT ++L NN
Sbjct: 86  LDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 49.9 bits (120), Expect = 3e-07
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 140 SIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSL-ENLSQ 198
           S+P+ + T      + LNNN ++   P  F  L  L  L  +SN L+  +P  + + L+Q
Sbjct: 26  SVPAGIPTDK--QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQ 82

Query: 199 LTTLHLQNNQL 209
           LT L L +N L
Sbjct: 83  LTQLDLNDNHL 93

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 52/205 (25%), Positives = 87/205 (42%), Gaps = 20/205 (9%)

Query: 472 VKPIVPAEGTAVKTSTKTAKPFTTARSFTIASLQQYTNSFSQENLIGAGMLGSVYRAQL- 530
           V+         V      +K  T   +      +    S++   +IG G  G VY+A+L 
Sbjct: 17  VQQPSAFGSMKVSRDKDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLC 76

Query: 531 PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRL------L 584
             G+L+A+KK+      Q K  +  EL   + ++ H NIV L+ +    G++       L
Sbjct: 77  DSGELVAIKKV-----LQDKRFKNREL-QIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNL 130

Query: 585 IYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMAL-GAARALEYLHEICQPPIVHRNFKSA 643
           + +Y    T+  +       K  L     +++ +    R+L Y+H      I HR+ K  
Sbjct: 131 VLDYVPE-TVYRVARHYSRAKQTLP-VIYVKLYMYQLFRSLAYIHSFG---ICHRDIKPQ 185

Query: 644 NILLDDDLAV-SVSDCGLAPLISSG 667
           N+LLD D AV  + D G A  +  G
Sbjct: 186 NLLLDPDTAVLKLCDFGSAKQLVRG 210

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 54.0 bits (130), Expect = 8e-08
 Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 26/162 (16%)

Query: 511 FSQENLIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNI-DRIRHAN 568
           F    +IG G  G V   +L +  K+ A+K L+K    ++ +        ++        
Sbjct: 76  FEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKW 135

Query: 569 IVELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR----- 622
           I  L  Y  +    L L+ +Y   G          +L   LS     R+    AR     
Sbjct: 136 ITTLH-YAFQDDNNLYLVMDYYVGG----------DLLTLLS-KFEDRLPEEMARFYLAE 183

Query: 623 ---ALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
              A++ +H++     VHR+ K  NIL+D +  + ++D G  
Sbjct: 184 MVIAIDSVHQLH---YVHRDIKPDNILMDMNGHIRLADFGSC 222

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 53.7 bits (130), Expect = 9e-08
 Identities = 38/168 (22%), Positives = 74/168 (44%), Gaps = 33/168 (19%)

Query: 509 NSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR-- 565
             + + + +G G   +VY+A+     +++A+KK+ K     +  D       N   +R  
Sbjct: 10  KRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKI-KLGHRSEAKDGI-----NRTALREI 63

Query: 566 -------HANIVELKGYCAEHGQRLLIYEYCSN---GTLQDMLH--SDDELKNNLSWNTR 613
                  H NI+ L           L++++        ++D     +   +K   ++   
Sbjct: 64  KLLQELSHPNIIGLLDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPSHIK---AY--- 117

Query: 614 IRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           + M L   + LEYLH+     I+HR+ K  N+LLD++  + ++D GLA
Sbjct: 118 MLMTL---QGLEYLHQHW---ILHRDLKPNNLLLDENGVLKLADFGLA 159

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 23/155 (14%)

Query: 516 LIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNI-DRIRHANIVELK 573
           L+G G  G V   +    G+  A+K L K     + +       + +    RH  +  LK
Sbjct: 12  LLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALK 71

Query: 574 GYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRI---RMALGAAR---ALEY 626
            Y  +   RL  + EY + G L    H        LS        R     A    ALEY
Sbjct: 72  -YAFQTHDRLCFVMEYANGGEL--FFH--------LSRERVFTEERARFYGAEIVSALEY 120

Query: 627 LHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           LH      +V+R+ K  N++LD D  + ++D GL 
Sbjct: 121 LHSR---DVVYRDIKLENLMLDKDGHIKITDFGLC 152

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 35/164 (21%), Positives = 63/164 (38%), Gaps = 26/164 (15%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNI-DRIRH 566
           + F    +IG G    V   ++   G++ A+K ++K    ++ +        ++      
Sbjct: 61  DDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDR 120

Query: 567 ANIVELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR--- 622
             I +L  +  +    L L+ EY   G          +L   LS     R+    AR   
Sbjct: 121 RWITQLH-FAFQDENYLYLVMEYYVGG----------DLLTLLS-KFGERIPAEMARFYL 168

Query: 623 -----ALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
                A++ +H +     VHR+ K  NILLD    + ++D G  
Sbjct: 169 AEIVMAIDSVHRLG---YVHRDIKPDNILLDRCGHIRLADFGSC 209

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 28/164 (17%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNI-DRIRH 566
             +    +IG G  G V   +     K+ A+K L K    ++ D  F     +I      
Sbjct: 69  EDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANS 128

Query: 567 ANIVELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR--- 622
             +V+L  Y  +  + L ++ EY   G L             ++  +   +    AR   
Sbjct: 129 PWVVQLF-YAFQDDRYLYMVMEYMPGGDL-------------VNLMSNYDVPEKWARFYT 174

Query: 623 -----ALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
                AL+ +H +     +HR+ K  N+LLD    + ++D G  
Sbjct: 175 AEVVLALDAIHSMG---FIHRDVKPDNMLLDKSGHLKLADFGTC 215

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 52.1 bits (126), Expect = 2e-07
 Identities = 37/169 (21%), Positives = 68/169 (40%), Gaps = 37/169 (21%)

Query: 509 NSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDE------------FL 555
            +F +   IG G  G VY+A+    G+++A+KK+         + E              
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI-----RLDTETEGVPSTAIREISLLK 57

Query: 556 ELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSN---GTLQDMLHSDDELKNNLSWNT 612
           EL        H NIV+L        +  L++E+        +     +   L    S+  
Sbjct: 58  EL-------NHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSY-- 108

Query: 613 RIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
            +   L   + L + H      ++HR+ K  N+L++ + A+ ++D GLA
Sbjct: 109 -LFQLL---QGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLA 150

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 52.1 bits (126), Expect = 2e-07
 Identities = 36/167 (21%), Positives = 69/167 (41%), Gaps = 38/167 (22%)

Query: 511 FSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDE------------FLEL 557
           + +   IG G  G+V++A+     +++A+K++         DDE              EL
Sbjct: 4   YEKLEKIGEGTYGTVFKAKNRETHEIVALKRV-----RLDDDDEGVPSSALREICLLKEL 58

Query: 558 VNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTR---I 614
                  +H NIV L        +  L++E+C     QD+    D    +L        +
Sbjct: 59  -------KHKNIVRLHDVLHSDKKLTLVFEFCD----QDLKKYFDSCNGDLDPEIVKSFL 107

Query: 615 RMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
              L   + L + H      ++HR+ K  N+L++ +  + +++ GLA
Sbjct: 108 FQLL---KGLGFCHSRN---VLHRDLKPQNLLINRNGELKLANFGLA 148

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 35/173 (20%), Positives = 61/173 (35%), Gaps = 42/173 (24%)

Query: 509 NSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEF-----------LE 556
           + F Q   +G G   +VY+      G  +A+K++         ++              E
Sbjct: 5   SQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEV-----KLDSEEGTPSTAIREISLMKE 59

Query: 557 LVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDM-----LHSDDELKNNLSWN 611
           L       +H NIV L        +  L++E+       D+       +       L  N
Sbjct: 60  L-------KHENIVRLYDVIHTENKLTLVFEFMD----NDLKKYMDSRTVGNTPRGLELN 108

Query: 612 TR---IRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
                    L   + L + HE     I+HR+ K  N+L++    + + D GLA
Sbjct: 109 LVKYFQWQLL---QGLAFCHENK---ILHRDLKPQNLLINKRGQLKLGDFGLA 155

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 45/222 (20%)

Query: 457 PPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTTARSFTIASLQQYTNSFSQENL 516
                   P  E +  +  + +     K +  T +    + S  +         F    +
Sbjct: 7   HHHHDYDIPTTENLYFQGAMGSGIEEEKEAMNTRESGKASSSLGL-------QDFDLLRV 59

Query: 517 IGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDE-------FLELVNNIDRIRHAN 568
           IG G    V   +L    ++ A++ + K   +  +D +         E  +N     H  
Sbjct: 60  IGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASN-----HPF 114

Query: 569 IVELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR----- 622
           +V L   C +   RL  + EY + G L  M H   +           ++    AR     
Sbjct: 115 LVGLH-SCFQTESRLFFVIEYVNGGDL--MFHMQRQ----------RKLPEEHARFYSAE 161

Query: 623 ---ALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
              AL YLHE     I++R+ K  N+LLD +  + ++D G+ 
Sbjct: 162 ISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMC 200

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score = 52.2 bits (126), Expect = 3e-07
 Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 38/163 (23%)

Query: 516 LIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDE-------FLELVNNIDRIRHA 567
           +IG G    V   +L    ++ A+K + K   +  +D +         E  +N     H 
Sbjct: 16  VIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASN-----HP 70

Query: 568 NIVELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR---- 622
            +V L   C +   RL  + EY + G L  M H   +           ++    AR    
Sbjct: 71  FLVGLH-SCFQTESRLFFVIEYVNGGDL--MFHMQRQR----------KLPEEHARFYSA 117

Query: 623 ----ALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
               AL YLHE     I++R+ K  N+LLD +  + ++D G+ 
Sbjct: 118 EISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMC 157

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 51.8 bits (125), Expect = 3e-07
 Identities = 34/168 (20%), Positives = 70/168 (41%), Gaps = 37/168 (22%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEF-----------LE 556
            ++ + + +G G   +VY+ +      L+A+K++       + ++              +
Sbjct: 2   ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEI-----RLEHEEGAPCTAIREVSLLKD 56

Query: 557 LVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTR--- 613
           L       +HANIV L           L++EY      +D+    D+  N ++ +     
Sbjct: 57  L-------KHANIVTLHDIIHTEKSLTLVFEYLD----KDLKQYLDDCGNIINMHNVKLF 105

Query: 614 IRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           +   L   R L Y H      ++HR+ K  N+L+++   + ++D GLA
Sbjct: 106 LFQLL---RGLAYCHRQK---VLHRDLKPQNLLINERGELKLADFGLA 147

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 30/151 (19%), Positives = 56/151 (37%), Gaps = 22/151 (14%)

Query: 104 SIRVIDLSNNHIGG-SIPSILPV--TMQNFFLSDNQFSGSIPSSLATL-----TLLTDMS 155
           ++  ++L++  +    + ++LPV    +   L  N         L  L       +T + 
Sbjct: 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLR 161

Query: 156 LNNNLLSGE----IPDAFQSLTGLINLDLSSNNLSGE----LPPSLENLSQLTTLHLQNN 207
           L+NN L+      + +     T + +L L    L  E    L   L+   QL  L++  N
Sbjct: 162 LSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN 221

Query: 208 QLSGT-----LDVLQDLP-LRDLNIENNLFS 232
               T         ++ P L  L++  N  S
Sbjct: 222 GAGDTAALALARAAREHPSLELLHLYFNELS 252

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 17/135 (12%)

Query: 90  NLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATL- 148
            LG    + L     +  +            + +  +++   L+  + +    + +A + 
Sbjct: 37  KLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVL 96

Query: 149 ----TLLTDMSLNNNLLSGE----IPDAFQSLTGLINLDLSSNNLSGE----LPPSL-EN 195
                 L +++L +  L       +   F        L L  N+L  E    L   L  +
Sbjct: 97  GSGRHALDEVNLASCQLDPAGLRTLLPVFLRAR---KLGLQLNSLGPEACKDLRDLLLHD 153

Query: 196 LSQLTTLHLQNNQLS 210
             Q+TTL L NN L+
Sbjct: 154 QCQITTLRLSNNPLT 168

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 40/169 (23%), Positives = 75/169 (44%), Gaps = 20/169 (11%)

Query: 505 QQYTNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKK--LDKRASSQQKDDEFLELVNNI 561
           ++  + F  E + G G  G+V   +    G  +A+KK   D R     ++ E L+++ ++
Sbjct: 19  RKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPR----FRNRE-LQIMQDL 73

Query: 562 DRIRHANIVELKGYCAEHGQR-------LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRI 614
             + H NIV+L+ Y    G+R        ++ EY  + TL     +    +        I
Sbjct: 74  AVLHHPNIVQLQSYFYTLGERDRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPIL-I 131

Query: 615 RMAL-GAARALEYLHEICQPPIVHRNFKSANILLD-DDLAVSVSDCGLA 661
           ++ L    R++  LH      + HR+ K  N+L++  D  + + D G A
Sbjct: 132 KVFLFQLIRSIGCLHLPSVN-VCHRDIKPHNVLVNEADGTLKLCDFGSA 179

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 51.5 bits (124), Expect = 5e-07
 Identities = 41/173 (23%), Positives = 79/173 (45%), Gaps = 38/173 (21%)

Query: 509 NSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKK--LDKRASSQQKDDEF----LELVNNI 561
           + + +   IG G  G V++A+    G+ +A+KK  ++       + + F    L  +  +
Sbjct: 17  SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMEN------EKEGFPITALREIKIL 70

Query: 562 DRIRHANIVELKGYCAEHGQRL--------LIYEYCSN---GTLQDMLH--SDDELKNNL 608
             ++H N+V L   C               L++++C +   G L ++L   +  E+K   
Sbjct: 71  QLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIK--- 127

Query: 609 SWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
                ++M L     L Y+H      I+HR+ K+AN+L+  D  + ++D GLA
Sbjct: 128 ---RVMQMLL---NGLYYIHRNK---ILHRDMKAANVLITRDGVLKLADFGLA 171

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 51.0 bits (121), Expect = 6e-07
 Identities = 28/190 (14%), Positives = 51/190 (26%), Gaps = 53/190 (27%)

Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKL------DKRASSQQKDDEFLE---------LVNNI 561
           IG G+ G V++    D   +A+K +          S Q+  +E L          L++  
Sbjct: 28  IGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGE 86

Query: 562 DRIRHANIVELKG------------------YCAEHG------------QRLLIYEYCSN 591
              R    + L                    Y +  G            Q  ++ E+   
Sbjct: 87  VCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFG 146

Query: 592 GTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDL 651
           G   + +          S  T   +      +L       +    HR+    N+LL    
Sbjct: 147 GIDLEQMR-----TKLSSLATAKSILHQLTASLAVAEASLR--FEHRDLHWGNVLLKKTS 199

Query: 652 AVSVSDCGLA 661
              +      
Sbjct: 200 LKKLHYTLNG 209

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 50.7 bits (122), Expect = 7e-07
 Identities = 35/178 (19%), Positives = 67/178 (37%), Gaps = 46/178 (25%)

Query: 509 NSFSQENLIGAGMLGSVYRAQ--LPDGKLLAVKK--LDKRASSQQKDDEFL--------E 556
             +     IG G  G V++A+     G+ +A+K+  +          +E +         
Sbjct: 11  QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQT-------GEEGMPLSTIREVA 63

Query: 557 LVNNIDRIRHANIVELK----GYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWN 611
           ++ +++   H N+V L         +   +L L++E+            D +L   L   
Sbjct: 64  VLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHV-----------DQDLTTYLDKV 112

Query: 612 TRIRMALGAA--------RALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
               +             R L++LH      +VHR+ K  NIL+     + ++D GLA
Sbjct: 113 PEPGVPTETIKDMMFQLLRGLDFLHSHR---VVHRDLKPQNILVTSSGQIKLADFGLA 167

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score = 50.7 bits (122), Expect = 8e-07
 Identities = 54/225 (24%), Positives = 85/225 (37%), Gaps = 54/225 (24%)

Query: 449 PPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTTARSFTIASLQQYT 508
            P  P      P PPP   +++ + P          +S   AKP                
Sbjct: 4   QPQEPELMNANPAPPPAPSQQINLGP----------SSNPHAKP---------------- 37

Query: 509 NSFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNI--DRIR 565
           + F    +IG G  G V  A+        AVK L K+A  ++K+++ +    N+    ++
Sbjct: 38  SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVK 97

Query: 566 HANIVELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR-- 622
           H  +V L  +  +   +L  + +Y + G L    H   E                 AR  
Sbjct: 98  HPFLVGLH-FSFQTADKLYFVLDYINGGEL--FYHLQRERCFLEPR----------ARFY 144

Query: 623 ------ALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
                 AL YLH +    IV+R+ K  NILLD    + ++D GL 
Sbjct: 145 AAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTDFGLC 186

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 38/177 (21%), Positives = 71/177 (40%), Gaps = 39/177 (22%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNI------ 561
           + F     IG G  G V   Q  D  K+ A+K ++K+   ++ +      V N+      
Sbjct: 15  DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNE------VRNVFKELQI 68

Query: 562 -DRIRHANIVELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALG 619
              + H  +V L  Y  +  + + ++ +    G          +L+ +L  N   +    
Sbjct: 69  MQGLEHPFLVNLW-YSFQDEEDMFMVVDLLLGG----------DLRYHLQQNVHFKEE-- 115

Query: 620 AAR--------ALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
             +        AL+YL       I+HR+ K  NILLD+   V ++D  +A ++   +
Sbjct: 116 TVKLFICELVMALDYLQNQ---RIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRET 169

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 48.6 bits (115), Expect = 2e-06
 Identities = 13/60 (21%), Positives = 18/60 (30%)

Query: 433 EIDMSSLDMMMMPPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKP 492
            + M +   +  P    PPP P   P P P P          ++       K   K  K 
Sbjct: 36  SVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKK 95

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 16/48 (33%), Positives = 18/48 (37%)

Query: 445 PPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKP 492
           PPP P   P P P P P PP     VI KP    +           +P
Sbjct: 53  PPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQP 100

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 44.7 bits (105), Expect = 3e-05
 Identities = 14/48 (29%), Positives = 16/48 (33%)

Query: 445 PPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKP 492
           P   P P P P P PP   P V+EK   KP    +             
Sbjct: 57  PVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDV 104

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 44.7 bits (105), Expect = 4e-05
 Identities = 12/59 (20%), Positives = 17/59 (28%)

Query: 445 PPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTTARSFTIAS 503
           P P P P PP   P     P    K   KP+   +    +          +    T  +
Sbjct: 63  PEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPA 121

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 44.7 bits (105), Expect = 4e-05
 Identities = 13/54 (24%), Positives = 17/54 (31%)

Query: 443 MMPPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTTA 496
            +  P P P P P PP   P      K   KP         +   +  KP  + 
Sbjct: 57  PVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESR 110

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 44.7 bits (105), Expect = 4e-05
 Identities = 15/59 (25%), Positives = 22/59 (37%)

Query: 445 PPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTTARSFTIAS 503
             P     P P P P P P   V++   + + P E         TA    T+ + T A+
Sbjct: 74  EAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAAT 132

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 43.9 bits (103), Expect = 7e-05
 Identities = 13/52 (25%), Positives = 16/52 (30%)

Query: 445 PPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTTA 496
            P   P P P P P PP   PVV +       P      K   +  +     
Sbjct: 56  EPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPV 107

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 43.5 bits (102), Expect = 8e-05
 Identities = 12/59 (20%), Positives = 17/59 (28%)

Query: 445 PPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTTARSFTIAS 503
              P     P P P P P P    +   K  V    +   +  +   P     S   A+
Sbjct: 73  KEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAA 131

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 43.5 bits (102), Expect = 8e-05
 Identities = 15/49 (30%), Positives = 17/49 (34%)

Query: 444 MPPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKP 492
            P P   P P P P P PP    V     KP    +   VK   +  K 
Sbjct: 54  PPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKR 102

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 14/59 (23%), Positives = 18/59 (30%)

Query: 445 PPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTTARSFTIAS 503
            P PP   P     P P P P  + V      P        S   +    TA +   +S
Sbjct: 68  IPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSS 126

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 13/57 (22%), Positives = 14/57 (24%)

Query: 444 MPPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTTARSFT 500
            P P P P P PP   P        K   KP    +                A  F 
Sbjct: 60  EPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFE 116

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 13/62 (20%), Positives = 20/62 (32%)

Query: 445 PPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTTARSFTIASL 504
             P P P P P P       P  +   V+    +       +  T+   T A S  + S+
Sbjct: 80  EKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSV 139

Query: 505 QQ 506
             
Sbjct: 140 AS 141

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 14/59 (23%), Positives = 21/59 (35%)

Query: 434 IDMSSLDMMMMPPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKP 492
           I ++ +    + PP    PPP P   P P P  + +   +  V  E    K   K    
Sbjct: 35  ISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPV 93

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 10/50 (20%), Positives = 13/50 (26%)

Query: 443 MMPPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKP 492
             P P P PP   P     P P    K      V  +        ++   
Sbjct: 63  PEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPA 112

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 12/118 (10%)

Query: 134 DNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSG--ELPP 191
               S     +     +L   S     L   I +    L    +L+LS+N L    ++  
Sbjct: 135 KGLRSDPDLVAQNIDVVLNRRSCMAATLRI-IEENIPELL---SLNLSNNRLYRLDDMSS 190

Query: 192 SLENLSQLTTLHLQNNQLS--GTLDVLQDLPLRDLNIENNLFSGPIPEKMLQIPNFRK 247
            ++    L  L+L  N+L     LD ++ L L +L ++ N     + +       +  
Sbjct: 191 IVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN----SLCDTFRDQSTYIS 244

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 35/163 (21%), Positives = 61/163 (37%), Gaps = 25/163 (15%)

Query: 509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNI-DRIRH 566
           + F +   +G G  G V   +    G   A+K LDK+   + K  E       I   +  
Sbjct: 41  DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100

Query: 567 ANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR---- 622
             +V+L+    ++    ++ EY + G +   L                      AR    
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEP------------HARFYAA 148

Query: 623 ----ALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
                 EYLH +    +++R+ K  N+L+D    + V+D G A
Sbjct: 149 QIVLTFEYLHSLD---LIYRDLKPENLLIDQQGYIQVTDFGFA 188

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score = 48.8 bits (117), Expect = 4e-06
 Identities = 44/158 (27%), Positives = 68/158 (43%), Gaps = 28/158 (17%)

Query: 516 LIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDE-------FLELVNNIDRIRHA 567
           ++G G  G V  A++ + G L AVK L K    Q  D E        L L  N     H 
Sbjct: 30  VLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARN-----HP 84

Query: 568 NIVELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR---A 623
            + +L   C +   RL  + E+ + G L  M H     + + +     R    AA    A
Sbjct: 85  FLTQLF-CCFQTPDRLFFVMEFVNGGDL--MFHIQKSRRFDEA-----RARFYAAEIISA 136

Query: 624 LEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           L +LH+     I++R+ K  N+LLD +    ++D G+ 
Sbjct: 137 LMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGMC 171

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 37/163 (22%), Positives = 58/163 (35%), Gaps = 38/163 (23%)

Query: 516 LIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDE-------FLELVNNIDRIRHA 567
           ++G G  G V  ++     +L AVK L K    Q  D E        L L          
Sbjct: 27  VLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGK-----PP 81

Query: 568 NIVELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR---- 622
            + +L   C +   RL  + EY + G L  M H               R     A     
Sbjct: 82  FLTQLH-SCFQTMDRLYFVMEYVNGGDL--MYHIQQV----------GRFKEPHAVFYAA 128

Query: 623 ----ALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
                L +L       I++R+ K  N++LD +  + ++D G+ 
Sbjct: 129 EIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMC 168

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score = 47.2 bits (113), Expect = 9e-06
 Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 21/155 (13%)

Query: 516 LIGAGMLGSVY----RAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNI-DRIRHANIV 570
           ++G G  G V+     +     +L A+K L K A+ + +D    ++  +I   + H  IV
Sbjct: 31  VLGQGSFGKVFLVKKISGSDARQLYAMKVLKK-ATLKVRDRVRTKMERDILVEVNHPFIV 89

Query: 571 ELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMA---LGAARALEY 626
           +L  Y  +   +L LI ++   G L        E+        +  +A   L    AL++
Sbjct: 90  KLH-YAFQTEGKLYLILDFLRGGDL--FTRLSKEVMFTEED-VKFYLAELAL----ALDH 141

Query: 627 LHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           LH +    I++R+ K  NILLD++  + ++D GL+
Sbjct: 142 LHSLG---IIYRDLKPENILLDEEGHIKLTDFGLS 173

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 1e-05
 Identities = 40/275 (14%), Positives = 75/275 (27%), Gaps = 78/275 (28%)

Query: 35  VTNPNDVAAI-NSLYAALGSPVLPGWVASAGDP-CGESWQGVQ-CNASDIIAIILNGA-- 89
           V+       +  +L      P     V   G    G++W  +  C +  +   +      
Sbjct: 131 VSRLQPYLKLRQALLEL--RPA--KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186

Query: 90  -NLG-----GELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNF------FLSDNQF 137
            NL        + E L        ID  N        S + + + +        L    +
Sbjct: 187 LNLKNCNSPETVLEMLQKLL--YQID-PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 138 SGSIPSSLATL-----------------TLLT--DMSLNNNLLSGE-----IPDAFQSLT 173
                + L  L                  LLT     + + L +       +     +LT
Sbjct: 244 ----ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 174 GLINLDLSSNNLS---GELPPSLENLSQL-----------------TTLHLQNNQLSGT- 212
                 L    L     +LP  +   +                      H+  ++L+   
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 213 ---LDVLQDLPLRDLNIENNLF--SGPIPEKMLQI 242
              L+VL+    R +    ++F  S  IP  +L +
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 5e-05
 Identities = 24/205 (11%), Positives = 63/205 (30%), Gaps = 56/205 (27%)

Query: 466 VVEKVIVKPIVPAEGTAVKTSTKTAKPFTTARSFT---------IASLQQYTNSFSQENL 516
           ++  +  +   P+  T +    +  + +   + F             L+Q          
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRD-RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152

Query: 517 IGA-GMLGSVYRAQLPDGK-LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELK- 573
           +   G+LGS        GK  +A+              +    ++         I  L  
Sbjct: 153 VLIDGVLGS--------GKTWVALDVC--------LSYKVQCKMDF-------KIFWLNL 189

Query: 574 GYCAEHGQRLLIYEYCSNGTLQDMLHS-DDELKNNLSWNTRIRMALGAARALEYLHEICQ 632
             C      L +        LQ +L+  D    +    ++ I++ + + +    L  +  
Sbjct: 190 KNCNSPETVLEM--------LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ--AELRRL-- 237

Query: 633 PPIVHRNFKSANILLDDDLAVSVSD 657
             +  + +++  ++L +     V +
Sbjct: 238 --LKSKPYENCLLVLLN-----VQN 255

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 6e-05
 Identities = 88/626 (14%), Positives = 175/626 (27%), Gaps = 158/626 (25%)

Query: 108 IDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPD 167
           +D            IL V    F + +      +       ++L+   +++ ++S    D
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAF-VDNFDCK-DVQDMP--KSILSKEEIDHIIMS---KD 59

Query: 168 AFQSLTGLINLDLSSNN------LSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLPL 221
           A      L    LS         +   L  + + L  ++ +  +  Q S    +  +   
Sbjct: 60  AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL--MSPIKTEQRQPSMMTRMYIEQ-- 115

Query: 222 RD-LNIENNLFSG---PIPEKMLQIPNFRKDGNPFNSTVAPSRPPTSSVTPPPAPPFFGP 277
           RD L  +N +F+       +  L++                 R     + P       G 
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKL-----------------RQALLELRPAKNVLIDG- 157

Query: 278 RPVSGSSPVSRTPPSQHTPGKQADGPTALEDSNSGKKKSSTTKKIVWISIAGV----LLF 333
             V GS             GK      AL+   S K +     KI W+++        + 
Sbjct: 158 --VLGS-------------GKTW---VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 334 VILALVFLLFMPRCIKR--------------RGEVDRIFKRHQ----------VGAFRGN 369
            +L  +     P    R              + E+ R+ K             V      
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-----Q 254

Query: 370 NRE--EARDNG--TLALPTNQMEKDASVKPKEDHRSEMRRMGAIPHAQNEQERNK---QR 422
           N +   A +     L     +   D        H S       +   + +    K    R
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 423 MSTIPRRDDHEIDMSSLDMMMMPPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTA 482
              +PR    E+  ++                          P    +I + I     T 
Sbjct: 315 PQDLPR----EVLTTN--------------------------PRRLSIIAESIRDGLATW 344

Query: 483 VKTSTKTAKPFTTARSFTIASL-----QQYTNSFS--QENL-IGAGMLGSVYRAQLPDGK 534
                      TT    ++  L     ++  +  S    +  I   +L  ++   +    
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404

Query: 535 LLAVKKLDKRASSQQKDDEF--------LELVNNIDRIR--HANIVE----LKGYCAEHG 580
           ++ V KL K +  +++  E         LEL   ++     H +IV+     K + ++  
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464

Query: 581 QRLLI--YEYCSNG---TLQDMLHSDDELKN---NLSW-NTRIRMALGAARALEYLHEIC 631
               +  Y Y   G      +        +    +  +   +IR    A  A   +    
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524

Query: 632 QPPIVHRNFKSANILLDDDLAVSVSD 657
           Q    ++ +   N    + L  ++ D
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILD 550

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 36/158 (22%), Positives = 59/158 (37%), Gaps = 28/158 (17%)

Query: 516 LIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNI--DRIRHANIVEL 572
           ++G G  G V+ A+     +  A+K L K       D E   +   +      H  +  +
Sbjct: 24  MLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHM 83

Query: 573 KGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR--------A 623
                +  + L  + EY + G L  M H               +  L  A          
Sbjct: 84  F-CTFQTKENLFFVMEYLNGGDL--MYHIQSC----------HKFDLSRATFYAAEIILG 130

Query: 624 LEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           L++LH      IV+R+ K  NILLD D  + ++D G+ 
Sbjct: 131 LQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGMC 165

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 31/161 (19%)

Query: 516 LIGAGMLGSVYRAQLP----DGKLLAVKKLDKRASSQQKDD-EFLELVNNI-DRIRHANI 569
           ++G G  G V++ +       GK+ A+K L K    +   D    +   NI + ++H  I
Sbjct: 24  VLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFI 83

Query: 570 VELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR------ 622
           V+L  Y  + G +L LI EY S G L   +         L            A       
Sbjct: 84  VDLI-YAFQTGGKLYLILEYLSGGEL--FMQ--------LE--REGIFMEDTACFYLAEI 130

Query: 623 --ALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
             AL +LH+     I++R+ K  NI+L+    V ++D GL 
Sbjct: 131 SMALGHLHQK---GIIYRDLKPENIMLNHQGHVKLTDFGLC 168

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 45.6 bits (109), Expect = 3e-05
 Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 27/164 (16%)

Query: 509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNI-DRIRH 566
             F     +G G  G V+  +   +G+  A+K L K    + K  E       +   + H
Sbjct: 6   QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTH 65

Query: 567 ANIVELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR--- 622
             I+ +     +  Q++ +I +Y   G          EL + L  + R    +  A+   
Sbjct: 66  PFIIRMW-GTFQDAQQIFMIMDYIEGG----------ELFSLLRKSQRFPNPV--AKFYA 112

Query: 623 -----ALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
                ALEYLH      I++R+ K  NILLD +  + ++D G A
Sbjct: 113 AEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDFGFA 153

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 44/169 (26%), Positives = 68/169 (40%), Gaps = 46/169 (27%)

Query: 516 LIGAGMLGSVYRAQLPDGK----LLAVKKLDKRASSQQKDDEF---------LELVNNID 562
           ++G G  G V+  +   G     L A+K L K A+  QK             LE +    
Sbjct: 61  VLGTGAYGKVFLVRKISGHDTGKLYAMKVLKK-ATIVQKAKTTEHTRTERQVLEHIRQ-- 117

Query: 563 RIRHANIVELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRM-ALGA 620
                 +V L  Y  +   +L LI +Y + G L    H        LS   +        
Sbjct: 118 ---SPFLVTLH-YAFQTETKLHLILDYINGGEL--FTH--------LS---QRERFTEHE 160

Query: 621 AR--------ALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
            +        ALE+LH++    I++R+ K  NILLD +  V ++D GL+
Sbjct: 161 VQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLS 206

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 23/137 (16%)

Query: 74  VQCNASDIIAIILNGANLGGE-----LGENLGAFSSIRVIDLSNNHIGG----SIPSILP 124
           +Q N  D+  + LN              E L   + ++   +           ++  +L 
Sbjct: 31  IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK 90

Query: 125 V--TMQNFFLSDNQFSGSIPSSLA-------TLTLLTDMSLNNNLLSG----EIPDAFQS 171
           V  T+++  +  N  SGS   +L        +L  L  +   +  L      EI +  + 
Sbjct: 91  VNNTLKSLNVESNFISGSGILALVEALQSNTSLIEL-RIDNQSQPLGNNVEMEIANMLEK 149

Query: 172 LTGLINLDLSSNNLSGE 188
            T L+            
Sbjct: 150 NTTLLKFGYHFTQQGPR 166

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A Length = 296

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 20/152 (13%)

Query: 517 IGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDE--FLELVNNIDRIRHANIVELK 573
           IG+G  G +Y    +  G+ +A+K    +    Q   E    +++          I  ++
Sbjct: 17  IGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGV-----GIPTIR 71

Query: 574 GYCAEHGQRLLIYEYCSNG-TLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQ 632
              AE    +++ E    G +L+D+    +      S  T + +A      +EY+H    
Sbjct: 72  WCGAEGDYNVMVMELL--GPSLEDLF---NFCSRKFSLKTVLLLADQMISRIEYIHSKN- 125

Query: 633 PPIVHRNFKSANILL---DDDLAVSVSDCGLA 661
              +HR+ K  N L+        V + D GLA
Sbjct: 126 --FIHRDVKPDNFLMGLGKKGNLVYIIDFGLA 155

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 37/167 (22%)

Query: 517 IGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNID--RI---------- 564
           I +G  G+V      +G  +A+K++    S  +  +      ++    R+          
Sbjct: 30  ISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILS---DSFLCKRVLREIRLLNHF 86

Query: 565 RHANIVELKG-YCAEHGQRL----LIYEYCSNGT-LQDMLHSDDELKNNLSWNTRIRM-- 616
            H NI+ L+  +       +    L+ E     T L  ++H     +  +S    I+   
Sbjct: 87  HHPNILGLRDIFVHFEEPAMHKLYLVTELM--RTDLAQVIHDQ---RIVIS-PQHIQYFM 140

Query: 617 --ALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
              L     L  LHE     +VHR+    NILL D+  +++ D  LA
Sbjct: 141 YHIL---LGLHVLHEAG---VVHRDLHPGNILLADNNDITICDFNLA 181

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 42.2 bits (99), Expect = 7e-04
 Identities = 14/61 (22%), Positives = 17/61 (27%), Gaps = 1/61 (1%)

Query: 445 PPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTT-ARSFTIAS 503
             P  P  P   P P P        V   P+   +      + K  K  T    S  I  
Sbjct: 115 AAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTATDVIRALVAQKLKKELTEIPPSKAIKD 174

Query: 504 L 504
           L
Sbjct: 175 L 175

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 41.9 bits (98), Expect = 9e-04
 Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 1/61 (1%)

Query: 445 PPPPPPPPPPPPPPPPPPPPPVVEKVIVKPIVPAEGTAVKTSTKTAKPFTT-ARSFTIAS 503
              P P    P P     P     ++  +P+  +    V  + K  K   +   S TI  
Sbjct: 115 ASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKASLLLHVLVAHKLKKSLDSIPMSKTIKD 174

Query: 504 L 504
           L
Sbjct: 175 L 175

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	689
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	1e-38
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	5e-36
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	1e-35
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	3e-35
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	8e-35
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	1e-34
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	5e-34
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	1e-33
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	2e-33
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	2e-33
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	4e-33
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	7e-33
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	3e-32
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	4e-32
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	9e-32
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	1e-31
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	1e-31
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	3e-31
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	4e-31
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	1e-30
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	1e-30
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	5e-30
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	7e-30
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	8e-30
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	9e-30
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	1e-29
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	4e-29
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	4e-29
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	2e-28
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	5e-28
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	8e-28
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	1e-27
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	1e-27
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	2e-27
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	2e-27
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	3e-27
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	4e-27
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	2e-26
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	4e-25
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	5e-25
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	8e-25
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	2e-24
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	2e-24
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	4e-24
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	1e-23
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	5e-23
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	1e-22
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	1e-22
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	4e-22
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	5e-22
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	1e-21
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	2e-21
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	2e-21
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	3e-21
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	4e-21
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	2e-20
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	3e-20
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	1e-19
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	1e-18
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	9e-18
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	8e-17
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	1e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.003
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	5e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-09
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-09
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	4e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	5e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.003
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	5e-05
d1jvra_	137	a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell	2e-04
d1jvra_	137	a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell	2e-04
d1jvra_	137	a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	4e-04
d2gqba1	130	a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {	0.003

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  142 bits (359), Expect = 1e-38
 Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 9/168 (5%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
              +    IG+G  G+VY+ +      +AVK L+  A + Q+   F   V  + + RH N
Sbjct: 8   GQITVGQRIGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVN 65

Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           I+   GY     Q  ++ ++C   +L   LH    ++        I +A   A+ ++YLH
Sbjct: 66  ILLFMGYS-TAPQLAIVTQWCEGSSLYHHLHI---IETKFEMIKLIDIARQTAQGMDYLH 121

Query: 629 EICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSHNL 676
                 I+HR+ KS NI L +DL V + D GLA + S  S S     L
Sbjct: 122 ---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQL 166

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (339), Expect = 5e-36
 Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 9/160 (5%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
            +      +GAG  G V+         +AVK L +        D FL   N + +++H  
Sbjct: 13  ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQ---GSMSPDAFLAEANLMKQLQHQR 69

Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           +V L           +I EY  NG+L D L +       L+ N  + MA   A  + ++ 
Sbjct: 70  LVRLYAVV-TQEPIYIITEYMENGSLVDFLKTPS--GIKLTINKLLDMAAQIAEGMAFIE 126

Query: 629 EICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
           E      +HR+ ++ANIL+ D L+  ++D GLA LI    
Sbjct: 127 E---RNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE 163

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (335), Expect = 1e-35
 Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 5/163 (3%)

Query: 511 FSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
           +     IG G  G   + +   DGK+L  K+LD  + ++ +    +  VN +  ++H NI
Sbjct: 6   YEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNI 65

Query: 570 VELKGYCAEHGQRLL--IYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYL 627
           V       +     L  + EYC  G L  ++    + +  L     +R+      AL+  
Sbjct: 66  VRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKEC 125

Query: 628 HE--ICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
           H        ++HR+ K AN+ LD    V + D GLA +++  +
Sbjct: 126 HRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDT 168

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  133 bits (335), Expect = 3e-35
 Identities = 45/196 (22%), Positives = 81/196 (41%), Gaps = 20/196 (10%)

Query: 499 FTIASLQQYTNSFSQE---------NLIGAGMLGSVYRAQLP----DGKLLAVKKLDKRA 545
           FT     +    F++E          +IGAG  G V    L         +A+K L    
Sbjct: 7   FTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGY 66

Query: 546 SSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELK 605
           + +Q+  +FL   + + +  H N++ L+G   +    ++I E+  NG+L   L  +D   
Sbjct: 67  TEKQRR-DFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQND--- 122

Query: 606 NNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS 665
              +    + M  G A  ++YL        VHR+  + NIL++ +L   VSD GL+  + 
Sbjct: 123 GQFTVIQLVGMLRGIAAGMKYLA---DMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLE 179

Query: 666 SGSVSQVSHNLTIMRA 681
             +      +    + 
Sbjct: 180 DDTSDPTYTSALGGKI 195

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (333), Expect = 8e-35
 Identities = 31/165 (18%), Positives = 69/165 (41%), Gaps = 8/165 (4%)

Query: 504 LQQYTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNID 562
           ++   + F + + +GAG  G V++    P G ++A K +        ++ + +  +  + 
Sbjct: 1   MELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRN-QIIRELQVLH 59

Query: 563 RIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR 622
                 IV   G     G+  +  E+   G+L  +L         +      ++++   +
Sbjct: 60  ECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKK----AGRIPEQILGKVSIAVIK 115

Query: 623 ALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG 667
            L YL E     I+HR+ K +NIL++    + + D G++  +   
Sbjct: 116 GLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS 158

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (328), Expect = 1e-34
 Identities = 36/163 (22%), Positives = 73/163 (44%), Gaps = 9/163 (5%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
           +  +    IG+G  G V+     +   +A+K + +       +++F+E    + ++ H  
Sbjct: 5   SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIRE---GAMSEEDFIEEAEVMMKLSHPK 61

Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           +V+L G C E     L++E+  +G L D L +   L    +  T + M L     + YL 
Sbjct: 62  LVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLF---AAETLLGMCLDVCEGMAYLE 118

Query: 629 EICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQ 671
           E     ++HR+  + N L+ ++  + VSD G+   +     + 
Sbjct: 119 E---ACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTS 158

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (323), Expect = 5e-34
 Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 9/163 (5%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
              +    +G G  G V   +      +A+K + +       +DEF+E    +  + H  
Sbjct: 4   KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKE---GSMSEDEFIEEAKVMMNLSHEK 60

Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           +V+L G C +     +I EY +NG L + L      ++       + M      A+EYL 
Sbjct: 61  LVQLYGVCTKQRPIFIITEYMANGCLLNYLREM---RHRFQTQQLLEMCKDVCEAMEYLE 117

Query: 629 EICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQ 671
                  +HR+  + N L++D   V VSD GL+  +     + 
Sbjct: 118 ---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTS 157

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  129 bits (325), Expect = 1e-33
 Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 9/160 (5%)

Query: 511 FSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKR-ASSQQKDDEFLELVNNIDRIRHAN 568
           FS    IG G  G+VY A+ + + +++A+KK+      S +K  + ++ V  + ++RH N
Sbjct: 17  FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 76

Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
            ++ +G         L+ EYC       +       K  L       +  GA + L YLH
Sbjct: 77  TIQYRGCYLREHTAWLVMEYCLGSASDLLEVH----KKPLQEVEIAAVTHGALQGLAYLH 132

Query: 629 EICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
                 ++HR+ K+ NILL +   V + D G A +++  +
Sbjct: 133 S---HNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPAN 169

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (322), Expect = 2e-33
 Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 18/164 (10%)

Query: 514 ENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELK 573
           +  IG G  G V+R +   G+ +AVK    R   +++       +     +RH NI+   
Sbjct: 8   QESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFI 63

Query: 574 GYCAEHG----QRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
               +      Q  L+ +Y  +G+L D L+     +  ++    I++AL  A  L +LH 
Sbjct: 64  AADNKDNGTWTQLWLVSDYHEHGSLFDYLN-----RYTVTVEGMIKLALSTASGLAHLHM 118

Query: 630 IC-----QPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
                  +P I HR+ KS NIL+  +    ++D GLA    S +
Sbjct: 119 EIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSAT 162

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (319), Expect = 2e-33
 Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 11/159 (6%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
                   IG G  G V       G  +AVK +   A++Q     FL   + + ++RH+N
Sbjct: 7   KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDATAQ----AFLAEASVMTQLRHSN 61

Query: 569 IVELKGYCAEHGQRL-LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYL 627
           +V+L G   E    L ++ EY + G+L D L S    ++ L  +  ++ +L    A+EYL
Sbjct: 62  LVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRG--RSVLGGDCLLKFSLDVCEAMEYL 119

Query: 628 HEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS 666
                   VHR+  + N+L+ +D    VSD GL    SS
Sbjct: 120 E---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASS 155

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (318), Expect = 4e-33
 Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 11/158 (6%)

Query: 513 QENLIGAGMLGSVYRAQLPD---GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
           ++  +G+G  G+V +         K +AVK L   A+     DE L   N + ++ +  I
Sbjct: 11  EDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYI 70

Query: 570 VELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
           V + G C E    +L+ E    G L   L        ++     I +    +  ++YL  
Sbjct: 71  VRMIGIC-EAESWMLVMEMAELGPLNKYLQQ----NRHVKDKNIIELVHQVSMGMKYLE- 124

Query: 630 ICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG 667
             +   VHR+  + N+LL       +SD GL+  + + 
Sbjct: 125 --ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRAD 160

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (319), Expect = 7e-33
 Identities = 52/192 (27%), Positives = 77/192 (40%), Gaps = 28/192 (14%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPD------GKLLAVKKLDKRASSQQKDDEFLELVNNID 562
            +     ++G+G  G V  A             +AVK L ++A S +++    EL     
Sbjct: 37  ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQ 96

Query: 563 RIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHS-------------------DDE 603
              H NIV L G C   G   LI+EYC  G L + L S                   ++E
Sbjct: 97  LGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEE 156

Query: 604 LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPL 663
             N L++   +  A   A+ +E+L        VHR+  + N+L+     V + D GLA  
Sbjct: 157 DLNVLTFEDLLCFAYQVAKGMEFLEF---KSCVHRDLAARNVLVTHGKVVKICDFGLARD 213

Query: 664 ISSGSVSQVSHN 675
           I S S   V  N
Sbjct: 214 IMSDSNYVVRGN 225

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (312), Expect = 3e-32
 Identities = 41/166 (24%), Positives = 68/166 (40%), Gaps = 9/166 (5%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
            S   E  +G G  G V+         +A+K L          + FL+    + ++RH  
Sbjct: 17  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKP---GTMSPEAFLQEAQVMKKLRHEK 73

Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           +V+L           ++ EY S G+L D L  +            + MA   A  + Y+ 
Sbjct: 74  LVQLYAVV-SEEPIYIVTEYMSKGSLLDFLKGETGKYLR--LPQLVDMAAQIASGMAYVE 130

Query: 629 EICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSH 674
              +   VHR+ ++ANIL+ ++L   V+D GLA LI     +    
Sbjct: 131 ---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQG 173

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (311), Expect = 4e-32
 Identities = 32/155 (20%), Positives = 64/155 (41%), Gaps = 11/155 (7%)

Query: 517 IGAGMLGSVYRAQL---PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELK 573
           +G G  GSV +           +A+K L K+ + +   +E +     + ++ +  IV L 
Sbjct: 17  LGCGNFGSVRQGVYRMRKKQIDVAIKVL-KQGTEKADTEEMMREAQIMHQLDNPYIVRLI 75

Query: 574 GYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQP 633
           G C +    +L+ E    G L   L      +  +  +    +    +  ++YL    + 
Sbjct: 76  GVC-QAEALMLVMEMAGGGPLHKFLVGK---REEIPVSNVAELLHQVSMGMKYLE---EK 128

Query: 634 PIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
             VHR+  + N+LL +     +SD GL+  + +  
Sbjct: 129 NFVHRDLAARNVLLVNRHYAKISDFGLSKALGADD 163

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (310), Expect = 9e-32
 Identities = 45/186 (24%), Positives = 69/186 (37%), Gaps = 25/186 (13%)

Query: 509 NSFSQENLIGAGMLGSVYRAQL------PDGKLLAVKKLDKRASSQQKDDEFLELVNNID 562
           N  S    +GAG  G V  A             +AVK L   A   +++   +  +  + 
Sbjct: 23  NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTERE-ALMSELKVLS 81

Query: 563 RI-RHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHS--------------DDELKNN 607
            +  H NIV L G C   G  L+I EYC  G L + L                 ++ +  
Sbjct: 82  YLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELA 141

Query: 608 LSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG 667
           L     +  +   A+ + +L        +HR+  + NILL       + D GLA  I + 
Sbjct: 142 LDLEDLLSFSYQVAKGMAFLAS---KNCIHRDLAARNILLTHGRITKICDFGLARDIKND 198

Query: 668 SVSQVS 673
           S   V 
Sbjct: 199 SNYVVK 204

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  123 bits (308), Expect = 1e-31
 Identities = 50/201 (24%), Positives = 83/201 (41%), Gaps = 30/201 (14%)

Query: 501 IASLQQYTNSFSQENLIGAGMLGSVYRAQLP------DGKLLAVKKLDKRASSQQKDDEF 554
           + SL+   N+      IG G  G V++A+ P         ++AVK L + AS+  +  +F
Sbjct: 5   LLSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQA-DF 63

Query: 555 LELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHS-------------- 600
                 +    + NIV+L G CA      L++EY + G L + L S              
Sbjct: 64  QREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDL 123

Query: 601 ------DDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVS 654
                        LS   ++ +A   A  + YL E      VHR+  + N L+ +++ V 
Sbjct: 124 STRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSE---RKFVHRDLATRNCLVGENMVVK 180

Query: 655 VSDCGLAPLISSGSVSQVSHN 675
           ++D GL+  I S    +   N
Sbjct: 181 IADFGLSRNIYSADYYKADGN 201

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  122 bits (307), Expect = 1e-31
 Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 9/161 (5%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHA 567
              + ++ +G G  G VY          +AVK L +      + +EFL+    +  I+H 
Sbjct: 17  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE---DTMEVEEFLKEAAVMKEIKHP 73

Query: 568 NIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYL 627
           N+V+L G C       +I E+ + G L D L   +  +  +S    + MA   + A+EYL
Sbjct: 74  NLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECN--RQEVSAVVLLYMATQISSAMEYL 131

Query: 628 HEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
               +   +HR+  + N L+ ++  V V+D GL+ L++  +
Sbjct: 132 E---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT 169

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (305), Expect = 3e-31
 Identities = 38/154 (24%), Positives = 75/154 (48%), Gaps = 9/154 (5%)

Query: 515 NLIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELK 573
             +G G  G VY+AQ  +   L A K +D +  S+++ ++++  ++ +    H NIV+L 
Sbjct: 18  GELGDGAFGKVYKAQNKETSVLAAAKVIDTK--SEEELEDYMVEIDILASCDHPNIVKLL 75

Query: 574 GYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQP 633
                     ++ E+C+ G +  ++    EL+  L+ +    +      AL YLH+    
Sbjct: 76  DAFYYENNLWILIEFCAGGAVDAVML---ELERPLTESQIQVVCKQTLDALNYLHD---N 129

Query: 634 PIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG 667
            I+HR+ K+ NIL   D  + ++D G++   +  
Sbjct: 130 KIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRT 163

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (302), Expect = 4e-31
 Identities = 40/153 (26%), Positives = 62/153 (40%), Gaps = 9/153 (5%)

Query: 511 FSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDK-RASSQQKDDEFLELVNNIDRIRHAN 568
           F     +G G  G+VY A+      +LA+K L K +      + +    V     +RH N
Sbjct: 8   FEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPN 67

Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           I+ L GY  +  +  LI EY   GT+   L       +              A AL Y H
Sbjct: 68  ILRLYGYFHDATRVYLILEYAPLGTVYRELQKL----SKFDEQRTATYITELANALSYCH 123

Query: 629 EICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
                 ++HR+ K  N+LL     + ++D G +
Sbjct: 124 S---KRVIHRDIKPENLLLGSAGELKIADFGWS 153

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (301), Expect = 1e-30
 Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 18/168 (10%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPDGKLL---AVKKLDKRASSQQKDDEFLELVNNIDRIR 565
           N    +++IG G  G V +A++    L    A+K++ + AS     D   EL        
Sbjct: 10  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 69

Query: 566 HANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLH------------SDDELKNNLSWNTR 613
           H NI+ L G C   G   L  EY  +G L D L               +   + LS    
Sbjct: 70  HPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQL 129

Query: 614 IRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           +  A   AR ++YL    Q   +HR+  + NIL+ ++    ++D GL+
Sbjct: 130 LHFAADVARGMDYL---SQKQFIHRDLAARNILVGENYVAKIADFGLS 174

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (298), Expect = 1e-30
 Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 12/170 (7%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPDG-----KLLAVKKLDKRASSQQKDDEFLELVNNIDR 563
           +  +++ +IGAG  G VY+  L          +A+K L    + +Q+  +FL     + +
Sbjct: 7   SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRV-DFLGEAGIMGQ 65

Query: 564 IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
             H NI+ L+G  +++   ++I EY  NG L   L   D      S    + M  G A  
Sbjct: 66  FSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKD---GEFSVLQLVGMLRGIAAG 122

Query: 624 LEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVS 673
           ++YL        VHR+  + NIL++ +L   VSD GL+ ++     +  +
Sbjct: 123 MKYLAN---MNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYT 169

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (294), Expect = 5e-30
 Identities = 40/165 (24%), Positives = 68/165 (41%), Gaps = 9/165 (5%)

Query: 511 FSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
           +     +G G  G V  A      + +AVK +D +  +    +   + +     + H N+
Sbjct: 7   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMK-RAVDCPENIKKEICINKMLNHENV 65

Query: 570 VELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
           V+  G+  E   + L  EYCS G L D +         +      R        + YLH 
Sbjct: 66  VKFYGHRREGNIQYLFLEYCSGGELFDRIEP----DIGMPEPDAQRFFHQLMAGVVYLHG 121

Query: 630 ICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSH 674
           I    I HR+ K  N+LLD+   + +SD GLA +    +  ++ +
Sbjct: 122 IG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLN 163

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (295), Expect = 7e-30
 Identities = 42/171 (24%), Positives = 69/171 (40%), Gaps = 12/171 (7%)

Query: 514 ENLIGAGMLGSVYRAQLPDGK----LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
             +IG G  G VY   L D        AVK L  R +   +  +FL     +    H N+
Sbjct: 32  NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSL-NRITDIGEVSQFLTEGIIMKDFSHPNV 90

Query: 570 VELKGYCAEH-GQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           + L G C    G  L++  Y  +G L++ + ++    +N +    I   L  A+ +    
Sbjct: 91  LSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNE---THNPTVKDLIGFGLQVAKGM---K 144

Query: 629 EICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSHNLTIM 679
            +     VHR+  + N +LD+   V V+D GLA  +       V +     
Sbjct: 145 FLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAK 195

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (293), Expect = 8e-30
 Identities = 38/165 (23%), Positives = 66/165 (40%), Gaps = 11/165 (6%)

Query: 514 ENLIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVEL 572
           +  IG G   +VY+    +    +A  +L  R  ++ +   F E    +  ++H NIV  
Sbjct: 14  DIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRF 73

Query: 573 KGYCAEHGQR----LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
                   +     +L+ E  ++GTL+  L         +             + L++LH
Sbjct: 74  YDSWESTVKGKKCIVLVTELMTSGTLKTYLKR----FKVMKIKVLRSWCRQILKGLQFLH 129

Query: 629 EICQPPIVHRNFKSANILLDD-DLAVSVSDCGLAPLISSGSVSQV 672
               PPI+HR+ K  NI +     +V + D GLA L  +     V
Sbjct: 130 T-RTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAV 173

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (294), Expect = 9e-30
 Identities = 39/167 (23%), Positives = 79/167 (47%), Gaps = 11/167 (6%)

Query: 500 TIASLQQYTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELV 558
           +I S+      +++   IG G  G+VY A  +  G+ +A+++++ +   Q K +  +  +
Sbjct: 11  SIVSVGDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQ--QQPKKELIINEI 68

Query: 559 NNIDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMAL 618
             +   ++ NIV          +  ++ EY + G+L D++      +  +       +  
Sbjct: 69  LVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVT-----ETCMDEGQIAAVCR 123

Query: 619 GAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS 665
              +ALE+LH      ++HR+ KS NILL  D +V ++D G    I+
Sbjct: 124 ECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQIT 167

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  118 bits (297), Expect = 1e-29
 Identities = 47/169 (27%), Positives = 66/169 (39%), Gaps = 12/169 (7%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKLDK-RASSQQKDDEFLELVNNIDRIR- 565
           N FS   +IG G  G VY  +  D GK+ A+K LDK R   +Q +   L     +  +  
Sbjct: 4   NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 63

Query: 566 --HANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARA 623
                IV +        +   I +  + G L   L          S       A      
Sbjct: 64  GDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQ----HGVFSEADMRFYAAEIILG 119

Query: 624 LEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQV 672
           LE++H      +V+R+ K ANILLD+   V +SD GLA   S       
Sbjct: 120 LEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS 165

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (289), Expect = 4e-29
 Identities = 46/179 (25%), Positives = 71/179 (39%), Gaps = 22/179 (12%)

Query: 509 NSFSQENLIGAGMLGSVYRA------QLPDGKLLAVKKLDKRASSQQKDDEFLELVNNID 562
           +       +G G  G V  A      +    + +AVK L + A+  +      EL   I 
Sbjct: 13  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIH 72

Query: 563 RIRHANIVELKGYCAEHGQRLLI-YEYCSNGTLQDMLHS------------DDELKNNLS 609
              H N+V L G C + G  L++  E+C  G L   L S            +D  K+ L+
Sbjct: 73  IGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLT 132

Query: 610 WNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
               I  +   A+ +E+L        +HR+  + NILL +   V + D GLA  I    
Sbjct: 133 LEHLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDP 188

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (289), Expect = 4e-29
 Identities = 39/172 (22%), Positives = 71/172 (41%), Gaps = 9/172 (5%)

Query: 511 FSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNI-DRIRHAN 568
           F    ++G G   +V  A+ L   +  A+K L+KR   ++    ++    ++  R+ H  
Sbjct: 10  FKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPF 69

Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
            V+L     +  +      Y  NG L   +        +               ALEYLH
Sbjct: 70  FVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI----GSFDETCTRFYTAEIVSALEYLH 125

Query: 629 EICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSHNLTIMR 680
                 I+HR+ K  NILL++D+ + ++D G A ++S  S    +++     
Sbjct: 126 G---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTA 174

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 2e-28
 Identities = 40/164 (24%), Positives = 63/164 (38%), Gaps = 12/164 (7%)

Query: 517 IGAGMLGSVYRAQLP----DGKLLAVKKLDKRASSQQKD-DEFLELVNNIDRIRHANIVE 571
           +G G  G V R +          +AVK L     SQ +  D+F+  VN +  + H N++ 
Sbjct: 16  LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 75

Query: 572 LKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEIC 631
           L G         ++ E    G+L D L      + +    T  R A+  A  + YL    
Sbjct: 76  LYGVV-LTPPMKMVTELAPLGSLLDRLRKH---QGHFLLGTLSRYAVQVAEGMGYLES-- 129

Query: 632 QPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSHN 675
               +HR+  + N+LL     V + D GL   +       V   
Sbjct: 130 -KRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQE 172

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (279), Expect = 5e-28
 Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 12/170 (7%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLPD----GKLLAVKKLDKRASSQQKDDEFLELVNNIDRI 564
                   IG G  G V++            +A+K   K  +S    ++FL+    + + 
Sbjct: 7   ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTC-KNCTSDSVREKFLQEALTMRQF 65

Query: 565 RHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARAL 624
            H +IV+L G   E+    +I E C+ G L+  L        +L   + I  A   + AL
Sbjct: 66  DHPHIVKLIGVITEN-PVWIIMELCTLGELRSFLQVRK---YSLDLASLILYAYQLSTAL 121

Query: 625 EYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSH 674
            YL        VHR+  + N+L+  +  V + D GL+  +   +  + S 
Sbjct: 122 AYLES---KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASK 168

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  111 bits (278), Expect = 8e-28
 Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 16/167 (9%)

Query: 511 FSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDR------ 563
           +  + ++G G+   V R    P  K  AVK +D         +E  EL     +      
Sbjct: 5   YEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILR 64

Query: 564 --IRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAA 621
               H NI++LK     +    L+++    G L D L      K  LS     ++     
Sbjct: 65  KVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTE----KVTLSEKETRKIMRALL 120

Query: 622 RALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
             +  LH++    IVHR+ K  NILLDDD+ + ++D G +  +  G 
Sbjct: 121 EVICALHKLN---IVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGE 164

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (279), Expect = 1e-27
 Identities = 37/179 (20%), Positives = 71/179 (39%), Gaps = 16/179 (8%)

Query: 509 NSFSQENLIGAGMLGSVYRAQL------PDGKLLAVKKLDKRASSQQKDDEFLELVNNID 562
              +    +G G  G VY               +A+K +++ AS +++  EFL   + + 
Sbjct: 20  EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERI-EFLNEASVMK 78

Query: 563 RIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLH------SDDELKNNLSWNTRIRM 616
                ++V L G  ++    L+I E  + G L+  L       +++ +    S +  I+M
Sbjct: 79  EFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQM 138

Query: 617 ALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSHN 675
           A   A  + YL        VHR+  + N ++ +D  V + D G+   I      +    
Sbjct: 139 AGEIADGMAYL---NANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGK 194

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score =  111 bits (277), Expect = 1e-27
 Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 7/154 (4%)

Query: 515 NLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKG 574
             IG G  G VY+AQ   G+  A+KK+      +      +  ++ +  ++H+NIV+L  
Sbjct: 8   EKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYD 67

Query: 575 YCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPP 634
                 + +L++E+      + +       +  L   T     L     + Y H+     
Sbjct: 68  VIHTKKRLVLVFEHLDQDLKKLLDVC----EGGLESVTAKSFLLQLLNGIAYCHD---RR 120

Query: 635 IVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
           ++HR+ K  N+L++ +  + ++D GLA       
Sbjct: 121 VLHRDLKPQNLLINREGELKIADFGLARAFGIPV 154

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (278), Expect = 2e-27
 Identities = 37/169 (21%), Positives = 76/169 (44%), Gaps = 11/169 (6%)

Query: 511 FSQENLIGAGMLGSVYRAQ-LPDGKLLAVK---KLDKRASSQQKDDEFLELVNNIDRIRH 566
           F +  ++G+G  G+VY+   +P+G+ + +    K  + A+S + + E L+    +  + +
Sbjct: 11  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDN 70

Query: 567 ANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEY 626
            ++  L G C       LI +    G L D +      K+N+     +   +  A+ + Y
Sbjct: 71  PHVCRLLGIC-LTSTVQLITQLMPFGCLLDYVREH---KDNIGSQYLLNWCVQIAKGMNY 126

Query: 627 LHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSHN 675
           L       +VHR+  + N+L+     V ++D GLA L+ +      +  
Sbjct: 127 L---EDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEG 172

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score =  111 bits (279), Expect = 2e-27
 Identities = 33/159 (20%), Positives = 69/159 (43%), Gaps = 11/159 (6%)

Query: 516 LIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKG 574
            +G+G  G V+R      G++   K ++      +        ++ ++++ H  ++ L  
Sbjct: 36  ELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKY--TVKNEISIMNQLHHPKLINLHD 93

Query: 575 YCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPP 634
              +  + +LI E+ S G L D + ++      +S    I     A   L+++HE     
Sbjct: 94  AFEDKYEMVLILEFLSGGELFDRIAAE---DYKMSEAEVINYMRQACEGLKHMHE---HS 147

Query: 635 IVHRNFKSANILLD--DDLAVSVSDCGLAPLISSGSVSQ 671
           IVH + K  NI+ +     +V + D GLA  ++   + +
Sbjct: 148 IVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVK 186

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  110 bits (276), Expect = 3e-27
 Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 6/163 (3%)

Query: 508 TNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRH 566
            + +   +++G G    V  A+     KL+A+K + K+ + + K+      +  + +I+H
Sbjct: 8   RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKK-ALEGKEGSMENEIAVLHKIKH 66

Query: 567 ANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEY 626
            NIV L       G   LI +  S G L D +      K   +     R+      A++Y
Sbjct: 67  PNIVALDDIYESGGHLYLIMQLVSGGELFDRIVE----KGFYTERDASRLIFQVLDAVKY 122

Query: 627 LHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSV 669
           LH++       +        LD+D  + +SD GL+ +   GSV
Sbjct: 123 LHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSV 165

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score =  110 bits (277), Expect = 4e-27
 Identities = 33/176 (18%), Positives = 66/176 (37%), Gaps = 11/176 (6%)

Query: 509 NSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHA 567
           + +     +G G  G V+R      G   A K +      +   +   + +  +  +RH 
Sbjct: 26  DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMT--PHESDKETVRKEIQTMSVLRHP 83

Query: 568 NIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYL 627
            +V L     +  + ++IYE+ S G L + +  +    N +S +  +       + L ++
Sbjct: 84  TLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADE---HNKMSEDEAVEYMRQVCKGLCHM 140

Query: 628 HEICQPPIVHRNFKSANILL--DDDLAVSVSDCGLAPLISSGSVSQVSHNLTIMRA 681
           HE      VH + K  NI+        + + D GL   +      +V+       A
Sbjct: 141 HENN---YVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAA 193

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (269), Expect = 2e-26
 Identities = 45/187 (24%), Positives = 72/187 (38%), Gaps = 23/187 (12%)

Query: 509 NSFSQENLIGAGMLGSVYRAQLP--------DGKLLAVKKLDKRASSQQKDDEFLELVNN 560
           +       +G G  G V  A+              +AVK L   A+ +   D   E+   
Sbjct: 13  DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMM 72

Query: 561 IDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLH------------SDDELKNNL 608
               +H NI+ L G C + G   +I EY S G L++ L                  +  L
Sbjct: 73  KMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQL 132

Query: 609 SWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
           S    +  A   AR +EYL        +HR+  + N+L+ +D  + ++D GLA  I    
Sbjct: 133 SSKDLVSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHID 189

Query: 669 VSQVSHN 675
             + + N
Sbjct: 190 YYKKTTN 196

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (260), Expect = 4e-25
 Identities = 28/162 (17%), Positives = 62/162 (38%), Gaps = 12/162 (7%)

Query: 516 LIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKG 574
            +G G  G V+R       K    K +  + + Q       + ++ ++  RH NI+ L  
Sbjct: 12  DLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQV---LVKKEISILNIARHRNILHLHE 68

Query: 575 YCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPP 634
                 + ++I+E+ S   + + +++       L+    +        AL++LH      
Sbjct: 69  SFESMEELVMIFEFISGLDIFERINTS---AFELNEREIVSYVHQVCEALQFLHS---HN 122

Query: 635 IVHRNFKSANILLD--DDLAVSVSDCGLAPLISSGSVSQVSH 674
           I H + +  NI+        + + + G A  +  G   ++  
Sbjct: 123 IGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLF 164

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 5e-25
 Identities = 33/159 (20%), Positives = 67/159 (42%), Gaps = 7/159 (4%)

Query: 511 FSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANI 569
           F +   IG G  G VY+A+    G+++A+KK+     ++      +  ++ +  + H NI
Sbjct: 4   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 63

Query: 570 VELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHE 629
           V+L        +  L++E+      + M  S       +             + L + H 
Sbjct: 64  VKLLDVIHTENKLYLVFEFLHQDLKKFMDASA---LTGIPLPLIKSYLFQLLQGLAFCHS 120

Query: 630 ICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
                ++HR+ K  N+L++ + A+ ++D GLA       
Sbjct: 121 HR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV 156

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  103 bits (258), Expect = 8e-25
 Identities = 36/174 (20%), Positives = 65/174 (37%), Gaps = 13/174 (7%)

Query: 503 SLQQYTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKD-DEFLELVNN 560
           SLQ +         +G G  G V+  +   +G+  A+K L K    + K  +   +    
Sbjct: 2   SLQDFQ----ILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLM 57

Query: 561 IDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGA 620
           +  + H  I+ + G   +  Q  +I +Y   G L  +L                     A
Sbjct: 58  LSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQ-------RFPNPVAKFYA 110

Query: 621 ARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSH 674
           A     L  +    I++R+ K  NILLD +  + ++D G A  +   + +    
Sbjct: 111 AEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCGT 164

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 2e-24
 Identities = 35/180 (19%), Positives = 65/180 (36%), Gaps = 14/180 (7%)

Query: 508 TNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRH 566
              ++  + IG G  G V  A    +   +A+KK+      Q      L  +  + R RH
Sbjct: 7   GPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPF-EHQTYCQRTLREIKILLRFRH 65

Query: 567 ANIVELKGYCA----EHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR 622
            NI+ +         E  + + +  +     L  +L        +LS +          R
Sbjct: 66  ENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLK-----TQHLSNDHICYFLYQILR 120

Query: 623 ALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSHNLTIMRAG 682
            L+Y+H      ++HR+ K +N+LL+    + + D GLA +              +    
Sbjct: 121 GLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRW 177

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 2e-24
 Identities = 35/154 (22%), Positives = 57/154 (37%), Gaps = 10/154 (6%)

Query: 511 FSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDE--FLELVNNIDRIRHA 567
           F    ++G G  G V+ A+     +  A+K L K       D E   +E         H 
Sbjct: 4   FILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHP 63

Query: 568 NIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYL 627
            +  +            + EY + G L   + S     +    +     A      L++L
Sbjct: 64  FLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQS----CHKFDLSRATFYAAEIILGLQFL 119

Query: 628 HEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           H      IV+R+ K  NILLD D  + ++D G+ 
Sbjct: 120 HSKG---IVYRDLKLDNILLDKDGHIKIADFGMC 150

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 4e-24
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 18/167 (10%)

Query: 510 SFSQENLIGAGMLGSVYRAQLPD-GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN 568
           S++   +IG G  G VY+A+L D G+L+A+KK+ +    + ++ + +       ++ H N
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMR------KLDHCN 74

Query: 569 IVELKGYCAEHGQR------LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR 622
           IV L+ +    G++       L+ +Y      +   H     K  L             R
Sbjct: 75  IVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRA-KQTLPVIYVKLYMYQLFR 133

Query: 623 ALEYLHEICQPPIVHRNFKSANILLDDD-LAVSVSDCGLAPLISSGS 668
           +L Y+H      I HR+ K  N+LLD D   + + D G A  +  G 
Sbjct: 134 SLAYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGE 177

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 98.7 bits (245), Expect = 1e-23
 Identities = 42/181 (23%), Positives = 74/181 (40%), Gaps = 13/181 (7%)

Query: 508 TNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKD-DEFLELVNNIDRIR 565
           ++ +    ++G G +  V+ A+ L   + +AVK L    +        F     N   + 
Sbjct: 6   SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALN 65

Query: 566 HANIVELKGYCAEHGQRL----LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAA 621
           H  IV +               ++ EY    TL+D++H++      ++    I +   A 
Sbjct: 66  HPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTE----GPMTPKRAIEVIADAC 121

Query: 622 RALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSHNLTIMRA 681
           +AL + H+     I+HR+ K ANI++    AV V D G+A  I+    S       I  A
Sbjct: 122 QALNFSHQ---NGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTA 178

Query: 682 G 682
            
Sbjct: 179 Q 179

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.5 bits (242), Expect = 5e-23
 Identities = 42/176 (23%), Positives = 65/176 (36%), Gaps = 25/176 (14%)

Query: 511 FSQENL---------IGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNN 560
           F QEN+         +G+G    V + +    G   A K + KR +   +     E +  
Sbjct: 3   FRQENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 62

Query: 561 ----IDRIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRM 616
               +  I+H N++ L          +LI E  + G L D L      K +L+       
Sbjct: 63  EVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAE----KESLTEEEATEF 118

Query: 617 ALGAARALEYLHEICQPPIVHRNFKSANILLDDD----LAVSVSDCGLAPLISSGS 668
                  + YLH      I H + K  NI+L D       + + D GLA  I  G+
Sbjct: 119 LKQILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGN 171

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.3 bits (241), Expect = 1e-22
 Identities = 38/174 (21%), Positives = 73/174 (41%), Gaps = 16/174 (9%)

Query: 515 NLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELK 573
             IG G  G V++A+    G+ +A+KK+      +      L  +  +  ++H N+V L 
Sbjct: 16  AKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLI 75

Query: 574 GYCAEH--------GQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALE 625
             C           G   L++++C +     + +         + +   R+       L 
Sbjct: 76  EICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNV----LVKFTLSEIKRVM---QMLLN 128

Query: 626 YLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSHNLTIM 679
            L+ I +  I+HR+ K+AN+L+  D  + ++D GLA   S    SQ +     +
Sbjct: 129 GLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRV 182

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.8 bits (240), Expect = 1e-22
 Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 11/157 (7%)

Query: 515 NLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDD---EFLELVNNIDRIRHANIV 570
           + +G G   +VY+A+     +++A+KK+     S+ KD      L  +  +  + H NI+
Sbjct: 4   DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNII 63

Query: 571 ELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEI 630
            L           L++++        +  +       L+ +      L   + LEYLH+ 
Sbjct: 64  GLLDAFGHKSNISLVFDFMETDLEVIIKDN----SLVLTPSHIKAYMLMTLQGLEYLHQH 119

Query: 631 CQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG 667
               I+HR+ K  N+LLD++  + ++D GLA    S 
Sbjct: 120 W---ILHRDLKPNNLLLDENGVLKLADFGLAKSFGSP 153

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.0 bits (238), Expect = 4e-22
 Identities = 30/167 (17%), Positives = 56/167 (33%), Gaps = 4/167 (2%)

Query: 509 NSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHA 567
             +     +G+G  G+V  A     G  +A+KKL +   S+         +  +  +RH 
Sbjct: 18  AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHE 77

Query: 568 NIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYL 627
           N++ L              ++                   L  +    +     + L Y+
Sbjct: 78  NVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYI 137

Query: 628 HEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQVSH 674
           H        HR+ K  N+ +++D  + + D GLA    S     V  
Sbjct: 138 HAAGII---HRDLKPGNLAVNEDCELKILDFGLARQADSEMTGYVVT 181

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.6 bits (237), Expect = 5e-22
 Identities = 36/155 (23%), Positives = 59/155 (38%), Gaps = 9/155 (5%)

Query: 509 NSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKD-DEFLELVNNIDRIRH 566
           N F    L+G G  G V   +    G+  A+K L K     + +    +     +   RH
Sbjct: 5   NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRH 64

Query: 567 ANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEY 626
             +  LK     H +   + EY + G L   L  +          T  R     A  +  
Sbjct: 65  PFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVF-------TEERARFYGAEIVSA 117

Query: 627 LHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           L  +    +V+R+ K  N++LD D  + ++D GL 
Sbjct: 118 LEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLC 152

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.5 bits (234), Expect = 1e-21
 Identities = 34/155 (21%), Positives = 62/155 (40%), Gaps = 9/155 (5%)

Query: 509 NSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKD-DEFLELVNNIDRIRH 566
           + F +   +G G  G V   +    G   A+K LDK+   + K  +  L     +  +  
Sbjct: 41  DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100

Query: 567 ANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEY 626
             +V+L+    ++    ++ EY + G +   L          S       A       EY
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR----IGRFSEPHARFYAAQIVLTFEY 156

Query: 627 LHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
           LH +    +++R+ K  N+L+D    + V+D G A
Sbjct: 157 LHSLD---LIYRDLKPENLLIDQQGYIQVTDFGFA 188

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.0 bits (233), Expect = 2e-21
 Identities = 32/176 (18%), Positives = 61/176 (34%), Gaps = 19/176 (10%)

Query: 514 ENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVEL 572
             ++G G+ G V +       +  A+K L     +++      E+  +    +  +IV +
Sbjct: 17  SQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARR------EVELHWRASQCPHIVRI 70

Query: 573 KGYC----AEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
                   A     L++ E    G L   +   D      +      +      A++YLH
Sbjct: 71  VDVYENLYAGRKCLLIVMECLDGGELFSRIQ--DRGDQAFTEREASEIMKSIGEAIQYLH 128

Query: 629 EICQPPIVHRNFKSANILLD---DDLAVSVSDCGLAPLISSGSVSQVSHNLTIMRA 681
            I    I HR+ K  N+L      +  + ++D G A   +S +            A
Sbjct: 129 SIN---IAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVA 181

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 92.9 bits (230), Expect = 2e-21
 Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 18/169 (10%)

Query: 514 ENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHAN-IVE 571
              IG G  G ++    L + + +A+K   +R+ + Q  DE+         +     I  
Sbjct: 10  GRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTY----KLLAGCTGIPN 65

Query: 572 LKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEIC 631
           +  +  E    +L+ +         +    D      S  T    A      ++ +HE  
Sbjct: 66  VYYFGQEGLHNVLVIDLLGPSLEDLL----DLCGRKFSVKTVAMAAKQMLARVQSIHEKS 121

Query: 632 QPPIVHRNFKSANILLDDDL-----AVSVSDCGLAPLISSGSVSQVSHN 675
              +V+R+ K  N L+          + V D G+          Q    
Sbjct: 122 ---LVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPY 167

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.0 bits (230), Expect = 3e-21
 Identities = 34/162 (20%), Positives = 67/162 (41%), Gaps = 16/162 (9%)

Query: 515 NLIGAGMLGSVYRAQ--LPDGKLLAVKKLDKRASSQQKDDEFL---ELVNNIDRIRHANI 569
             IG G  G V++A+     G+ +A+K++  +   +      +    ++ +++   H N+
Sbjct: 13  AEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNV 72

Query: 570 VELKGYCA-----EHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARAL 624
           V L   C         +  L++E+        +       +  +   T   M     R L
Sbjct: 73  VRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVP---EPGVPTETIKDMMFQLLRGL 129

Query: 625 EYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS 666
           ++LH      +VHR+ K  NIL+     + ++D GLA + S 
Sbjct: 130 DFLHSHR---VVHRDLKPQNILVTSSGQIKLADFGLARIYSF 168

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 92.2 bits (228), Expect = 4e-21
 Identities = 30/172 (17%), Positives = 52/172 (30%), Gaps = 16/172 (9%)

Query: 509 NSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHA 567
           N +     IG+G  G +Y    +  G+ +A+K    +     K  +          ++  
Sbjct: 7   NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVK----TKHPQLHIESKIYKMMQGG 62

Query: 568 NIVELKGYCAEHGQRLLIY-EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEY 626
             +    +C   G   ++  E                     S  T + +A      +EY
Sbjct: 63  VGIPTIRWCGAEGDYNVMVMELLGPSLEDLFNFC----SRKFSLKTVLLLADQMISRIEY 118

Query: 627 LHEICQPPIVHRNFKSANIL---LDDDLAVSVSDCGLAPLISSGSVSQVSHN 675
           +H       +HR+ K  N L         V + D GLA         Q    
Sbjct: 119 IHSKN---FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPY 167

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.4 bits (221), Expect = 2e-20
 Identities = 30/165 (18%), Positives = 58/165 (35%), Gaps = 14/165 (8%)

Query: 516 LIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI------RHAN 568
           L+G+G  GSVY    + D   +A+K ++K   S   +      V     +        + 
Sbjct: 11  LLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSG 70

Query: 569 IVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
           ++ L  +       +LI E            ++   +  L              A+ + H
Sbjct: 71  VIRLLDWFERPDSFVLILERPEPVQDLFDFITE---RGALQEELARSFFWQVLEAVRHCH 127

Query: 629 EICQPPIVHRNFKSANILLD-DDLAVSVSDCGLAPLISSGSVSQV 672
                 ++HR+ K  NIL+D +   + + D G   L+     +  
Sbjct: 128 NC---GVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDF 169

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.6 bits (221), Expect = 3e-20
 Identities = 29/166 (17%), Positives = 67/166 (40%), Gaps = 12/166 (7%)

Query: 504 LQQYTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNID 562
           +Q+Y     +   IG G  G+V++A+     +++A+K++      +      L  +  + 
Sbjct: 1   MQKYE----KLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLK 56

Query: 563 RIRHANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAAR 622
            ++H NIV L        +  L++E+C     +     +              +     +
Sbjct: 57  ELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNG-------DLDPEIVKSFLFQ 109

Query: 623 ALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
            L+ L       ++HR+ K  N+L++ +  + +++ GLA       
Sbjct: 110 LLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPV 155

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.4 bits (218), Expect = 1e-19
 Identities = 40/188 (21%), Positives = 70/188 (37%), Gaps = 19/188 (10%)

Query: 491 KPFTTARSFTIASLQQYTNSFSQEN-----LIGAGMLGSVYRAQL----PDGKLLAVKKL 541
           +  T       A+L  +      EN     ++G G  G V+  +       GKL A+K L
Sbjct: 1   QLLTVKHELRTANLTGHAEKVGIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVL 60

Query: 542 DKRASSQQKD--DEFLELVNNIDRIRHA-NIVELKGYCAEHGQRLLIYEYCSNGTLQDML 598
            K    Q+    +        ++ IR +  +V L        +  LI +Y + G L   L
Sbjct: 61  KKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHL 120

Query: 599 HSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDC 658
              +    +                +  L  + +  I++R+ K  NILLD +  V ++D 
Sbjct: 121 SQRERFTEHEVQIY-------VGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDF 173

Query: 659 GLAPLISS 666
           GL+    +
Sbjct: 174 GLSKEFVA 181

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 85.3 bits (210), Expect = 1e-18
 Identities = 32/165 (19%), Positives = 66/165 (40%), Gaps = 20/165 (12%)

Query: 509 NSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR-H 566
           + +     +G G    V+ A  + + + + VK L        K  +    +  ++ +R  
Sbjct: 35  DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKP-----VKKKKIKREIKILENLRGG 89

Query: 567 ANIVELKGYCAEHGQRL--LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARAL 624
            NI+ L     +   R   L++E+ +N   + +  +       L+            +AL
Sbjct: 90  PNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQT-------LTDYDIRFYMYEILKAL 142

Query: 625 EYLHEICQPPIVHRNFKSANILLD-DDLAVSVSDCGLAPLISSGS 668
           +Y H +    I+HR+ K  N+++D +   + + D GLA     G 
Sbjct: 143 DYCHSMG---IMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQ 184

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 79.8 bits (196), Expect = 9e-18
 Identities = 23/155 (14%), Positives = 50/155 (32%), Gaps = 19/155 (12%)

Query: 515 NLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQK--------DDEFLELVNNIDRIRH 566
            L+G G   +V+           VK      +S +K        D  F  L     R   
Sbjct: 6   KLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEF 65

Query: 567 ANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEY 626
             + +L+G          +Y +  N  L +++ + +  +  +     +         +  
Sbjct: 66  RALQKLQGLAVPK-----VYAWEGNAVLMELIDAKELYRVRVENPDEV--LDMILEEVAK 118

Query: 627 LHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA 661
            +      IVH +    N+L+ ++    + D   +
Sbjct: 119 FY---HRGIVHGDLSQYNVLVSEEGIW-IIDFPQS 149

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.4 bits (197), Expect = 8e-17
 Identities = 32/160 (20%), Positives = 56/160 (35%), Gaps = 17/160 (10%)

Query: 516 LIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKG 574
            IG+G  G V  A      + +A+KKL +   +Q         +  +  + H NI+ L  
Sbjct: 24  PIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLN 83

Query: 575 YCA------EHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLH 628
                    E     L+ E       Q +    D             +       +++LH
Sbjct: 84  VFTPQKTLEEFQDVYLVMELMDANLCQVIQMELD-------HERMSYLLYQMLCGIKHLH 136

Query: 629 EICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS 668
                  +HR+ K +NI++  D  + + D GLA    +  
Sbjct: 137 SAGI---IHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF 173

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.6 bits (195), Expect = 1e-16
 Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 4/159 (2%)

Query: 508 TNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRH 566
              +   + +G+G  GSV  A     G  +AVKKL +   S          +  +  ++H
Sbjct: 17  PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKH 76

Query: 567 ANIVELKGYCAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEY 626
            N++ L              +      L     ++      L+ +    +     R L+Y
Sbjct: 77  ENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKY 136

Query: 627 LHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS 665
           +H        HR+ K +N+ +++D  + + D GLA    
Sbjct: 137 IHSADII---HRDLKPSNLAVNEDCELKILDFGLARHTD 172

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 78.9 bits (193), Expect = 3e-16
 Identities = 39/154 (25%), Positives = 61/154 (39%), Gaps = 26/154 (16%)

Query: 97  ENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLAT--------- 147
             L + +++  +DL+NN I    P      +    L  NQ S   P +  T         
Sbjct: 235 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 294

Query: 148 -----------LTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENL 196
                      L  LT ++L  N +S   P    SLT L  L  ++N +S     SL NL
Sbjct: 295 NQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANL 350

Query: 197 SQLTTLHLQNNQLSGTLDVLQDLP-LRDLNIENN 229
           + +  L   +NQ+S  L  L +L  +  L + + 
Sbjct: 351 TNINWLSAGHNQISD-LTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 72.3 bits (176), Expect = 4e-14
 Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 28/157 (17%)

Query: 102 FSSIRVIDLSNNHIGGSIPSILPVT-MQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNL 160
            +++  + L+ N +   I ++  +T + +  L++NQ S   P  L+ LT LT++ L  N 
Sbjct: 218 LTNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 274

Query: 161 LSGEIP--------------------DAFQSLTGLINLDLSSNNLSGELPPSLENLSQLT 200
           +S   P                        +L  L  L L  NN+S   P  + +L++L 
Sbjct: 275 ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 332

Query: 201 TLHLQNNQLSGTLDVLQDLP-LRDLNIENNLFSGPIP 236
            L   NN++S  +  L +L  +  L+  +N  S   P
Sbjct: 333 RLFFANNKVSD-VSSLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 62.7 bits (151), Expect = 4e-11
 Identities = 41/148 (27%), Positives = 57/148 (38%), Gaps = 26/148 (17%)

Query: 108 IDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPD 167
           +  +NN I    P  +   +    L+ NQ       +LA+LT LTD+ L NN +S   P 
Sbjct: 202 LIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP- 258

Query: 168 AFQSLTGLINLDLSSNNLSGELP--------------------PSLENLSQLTTLHLQNN 207
               LT L  L L +N +S   P                      + NL  LT L L  N
Sbjct: 259 -LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 317

Query: 208 QLSGTLDVLQDLP-LRDLNIENNLFSGP 234
            +S  +  +  L  L+ L   NN  S  
Sbjct: 318 NISD-ISPVSSLTKLQRLFFANNKVSDV 344

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.3 bits (124), Expect = 1e-07
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 11/98 (11%)

Query: 145 LATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHL 204
           L + T+  D  +N         D   +L   +   L   N++  +  S  +L Q+TTL  
Sbjct: 1   LGSATITQDTPINQI-----FTDT--ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQA 51

Query: 205 QNNQLSGTLDVLQDLP-LRDLNIENNLFSGPIPEKMLQ 241
               +  ++D ++ L  L  +N  NN  +   P K L 
Sbjct: 52  DRLGIK-SIDGVEYLNNLTQINFSNNQLTDITPLKNLT 88

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.7 bits (112), Expect = 3e-06
 Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 157 NNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVL 216
            NN +S   P      T L  L L+ N L      +L +L+ LT L L NNQ+S    + 
Sbjct: 205 TNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS 260

Query: 217 QDLPLRDLNIENNLFSGPIPEKMLQIPNF 245
               L +L +  N  S   P   L     
Sbjct: 261 GLTKLTELKLGANQISNISPLAGLTALTN 289

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 9e-05
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 4/74 (5%)

Query: 156 LNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDV 215
           L    ++  +      L  +  L      +       +E L+ LT ++  NNQL+    +
Sbjct: 29  LGKTNVTDTVSQT--DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITPL 84

Query: 216 LQDLPLRDLNIENN 229
                L D+ + NN
Sbjct: 85  KNLTKLVDILMNNN 98

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 169 FQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP-LRDLNIE 227
              LT L +L  ++N +S   P     L+ L  L L  NQL   +  L  L  L DL++ 
Sbjct: 193 LAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLA 249

Query: 228 NNLFSGPIPEKML 240
           NN  S   P   L
Sbjct: 250 NNQISNLAPLSGL 262

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.6 bits (174), Expect = 5e-14
 Identities = 28/181 (15%), Positives = 65/181 (35%), Gaps = 19/181 (10%)

Query: 514 ENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVEL 572
              +G G   +V+ A+ + +   +A+K +      +   +   + +  + R+  A+  + 
Sbjct: 18  VRKLGWGHFSTVWLAKDMVNNTHVAMKIVRG---DKVYTEAAEDEIKLLQRVNDADNTKE 74

Query: 573 KGYCAEHGQRLLIY--EYCSNGTLQDM----------LHSDDELKNNLSWNTRIRMALGA 620
               A H  +LL +      NG    M                    +      +++   
Sbjct: 75  DSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQL 134

Query: 621 ARALEYLHEICQPPIVHRNFKSANILLD-DDLAVSVSDCGLAPLISSGSVSQVSHNLTIM 679
              L+Y+H   +  I+H + K  N+L++  D   ++    +A L ++    +   N    
Sbjct: 135 LLGLDYMH--RRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQT 192

Query: 680 R 680
           R
Sbjct: 193 R 193

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 70.2 bits (170), Expect = 1e-13
 Identities = 51/183 (27%), Positives = 78/183 (42%), Gaps = 27/183 (14%)

Query: 37  NPNDVAAINSLYAALGSP-VLPGWVASAGDPCGESWQGVQCNASDIIAIILNGANLGGEL 95
           NP D  A+  +   LG+P  L  W+ +  D C  +W GV C+                  
Sbjct: 4   NPQDKQALLQIKKDLGNPTTLSSWLPT-TDCCNRTWLGVLCDTD---------------- 46

Query: 96  GENLGAFSSIRVIDLSNNHIGGSIP-----SILPVTMQNFFLSDNQFSGSIPSSLATLTL 150
                    +  +DLS  ++    P     + LP     +    N   G IP ++A LT 
Sbjct: 47  ----TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102

Query: 151 LTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLS 210
           L  + + +  +SG IPD    +  L+ LD S N LSG LPPS+ +L  L  +    N++S
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

Query: 211 GTL 213
           G +
Sbjct: 163 GAI 165

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 65.9 bits (159), Expect = 3e-12
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 154 MSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQL 209
           + L NN + G +P     L  L +L++S NNL GE+ P   NL +       NN+ 
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 61.3 bits (147), Expect = 9e-11
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 179 DLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP-LRDLNIENN--LFSGPI 235
           DL +N + G LP  L  L  L +L++  N L G +    +L         NN  L   P+
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309

Query: 236 P 236
           P
Sbjct: 310 P 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 59.8 bits (143), Expect = 3e-10
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 126 TMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNL 185
            +    L +N+  G++P  L  L  L  ++++ N L GEIP    +L        ++N  
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC 303

Query: 186 --SGELPP 191
                LP 
Sbjct: 304 LCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 1/77 (1%)

Query: 67  CGESWQGVQCNASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVT 126
                 G    + ++  + L    + G L + L     +  +++S N++ G IP    + 
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291

Query: 127 -MQNFFLSDNQFSGSIP 142
                  ++N+     P
Sbjct: 292 RFDVSAYANNKCLCGSP 308

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.1 bits (165), Expect = 5e-13
 Identities = 30/152 (19%), Positives = 51/152 (33%), Gaps = 2/152 (1%)

Query: 104 SIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSG 163
            +RV+  S+  +   +P  LP       L +N+ +         L  L  + L NN +S 
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 164 EIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQL-SGTLDVLQDLPLR 222
             P AF  L  L  L LS N L        + L +L     +  ++     + L  + + 
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 129

Query: 223 DLNIENNLFSGPIPEKMLQIPNFRKDGNPFNS 254
           +L       SG        +           +
Sbjct: 130 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 161

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.7 bits (138), Expect = 1e-09
 Identities = 32/165 (19%), Positives = 62/165 (37%), Gaps = 14/165 (8%)

Query: 90  NLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLT 149
              G           +  I +++ +I  +IP  LP ++    L  N+ +    +SL  L 
Sbjct: 137 KSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKITKVDAASLKGLN 195

Query: 150 LLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQL 209
            L  + L+ N +S     +  +   L  L L++N L    P  L +   +  ++L NN +
Sbjct: 196 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNI 254

Query: 210 S--------GTLDVLQDLPLRDLNIENNLFSGPIPEKMLQIPNFR 246
           S              +      +++ +N    P+    +Q   FR
Sbjct: 255 SAIGSNDFCPPGYNTKKASYSGVSLFSN----PVQYWEIQPSTFR 295

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.7 bits (131), Expect = 1e-09
 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 6/111 (5%)

Query: 97  ENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSL 156
            +L     +  +DLS+N +    P++  +       + +    ++        L   +  
Sbjct: 14  CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLC 73

Query: 157 NNNLLSGEIPDAFQSLTGLINLDLSSNNLSGE------LPPSLENLSQLTT 201
           NN L          S   L+ L+L  N+L  E      L   L ++S + T
Sbjct: 74  NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 124

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.3 bits (130), Expect = 1e-09
 Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 6/116 (5%)

Query: 106 RVIDLSNNHIGGSIPSILPVT-MQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGE 164
           RV+ L++  +   +  +  +  + +  LS N+     P+ LA L  L  +    +  + E
Sbjct: 1   RVLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVL--QASDNALE 56

Query: 165 IPDAFQSLTGLINLDLSSNNL-SGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDL 219
             D   +L  L  L L +N L        L +  +L  L+LQ N L     + + L
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 112

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 57.5 bits (137), Expect = 2e-09
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 14/104 (13%)

Query: 127 MQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLS 186
           +       N  S  I S       L +++++NN L  E+P     L     L  S N+L+
Sbjct: 262 LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLA 317

Query: 187 GELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP--LRDLNIEN 228
            E+P   +NL     LH++ N L        D+P  + DL + +
Sbjct: 318 -EVPELPQNL---KQLHVEYNPLRE----FPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.6 bits (119), Expect = 3e-07
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 10/81 (12%)

Query: 102 FSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLL 161
             S+  +++SNN +   +P++ P  ++    S N  +  +P     L  L    +  N L
Sbjct: 283 PPSLEELNVSNNKL-IELPALPP-RLERLIASFNHLA-EVPELPQNLKQL---HVEYNPL 336

Query: 162 SGEIPDAFQSLTGLINLDLSS 182
             E PD  +S+    +L ++S
Sbjct: 337 R-EFPDIPESVE---DLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 5e-04
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 151 LTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQL 209
             ++ LNN  LS  +P+       L +L  S N+L+ ELP   ++L  L   +     L
Sbjct: 40  AHELELNNLGLS-SLPE---LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL 93

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 6e-04
 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 173 TGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLPLRDLNIENNLFS 232
                L+L++  LS  LP    +L    +L    N L+   ++ Q L    ++  NNL +
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHL---ESLVASCNSLTELPELPQSLKSLLVDN-NNLKA 92

Query: 233 GPIPEKMLQIPNF 245
                 +L+    
Sbjct: 93  LSDLPPLLEYLGV 105

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (131), Expect = 8e-09
 Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 3/139 (2%)

Query: 104 SIRVIDLSNNHIGGSIPSILPVTMQ--NFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLL 161
           +++ + L +N +               + FL  N+ S     +   L  L  + L+ N +
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 162 SGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP- 220
           +   P AF+ L  L+ L L +NNLS     +L  L  L  L L +N              
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW 249

Query: 221 LRDLNIENNLFSGPIPEKM 239
           L+     ++     +P+++
Sbjct: 250 LQKFRGSSSEVPCSLPQRL 268

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 6e-06
 Identities = 33/174 (18%), Positives = 47/174 (27%), Gaps = 28/174 (16%)

Query: 107 VIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLT-------------- 152
                   +  ++P  +P   Q  FL  N+ S    +S      LT              
Sbjct: 15  TTSCPQQGLQ-AVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA 73

Query: 153 -----------DMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTT 201
                          +N  L    P  F  L  L  L L    L    P     L+ L  
Sbjct: 74  AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133

Query: 202 LHLQNNQLSGTLD--VLQDLPLRDLNIENNLFSGPIPEKMLQIPNFRKDGNPFN 253
           L+LQ+N L    D        L  L +  N  S         + +  +     N
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 7e-06
 Identities = 26/141 (18%), Positives = 43/141 (30%), Gaps = 6/141 (4%)

Query: 73  GVQCNASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPV--TMQNF 130
               +  ++  + L+G  +            S+  + L  N +    P        +   
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 131 FLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELP 190
           +L  N  S     +LA L  L  + LN+N    +          L     SS+ +   LP
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL-WAWLQKFRGSSSEVPCSLP 265

Query: 191 PSLENLSQLTTLHLQNNQLSG 211
             L          L  N L G
Sbjct: 266 QRLAGRD---LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 7e-04
 Identities = 20/85 (23%), Positives = 30/85 (35%)

Query: 127 MQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLS 186
           +    L         P     L  L  + L +N L     D F+ L  L +L L  N +S
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166

Query: 187 GELPPSLENLSQLTTLHLQNNQLSG 211
                +   L  L  L L  N+++ 
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVAH 191

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (128), Expect = 3e-08
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 5/90 (5%)

Query: 127 MQNFFLSDNQFSGS-IPSSLATLTLLTDMSLNNNLLSGE----IPDAFQSLTGLINLDLS 181
           +Q+  +   + S +     L  L     + L++  L+      I  A +    L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 182 SNNLSGELPPSLENLSQLTTLHLQNNQLSG 211
           SN L       +    Q  +  +Q   L  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (125), Expect = 6e-08
 Identities = 22/106 (20%), Positives = 34/106 (32%), Gaps = 10/106 (9%)

Query: 124 PVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGE----IPDAFQSLTGLINLD 179
            + + N  L D              ++L  + L +  +S      +     +   L  LD
Sbjct: 344 ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 403

Query: 180 LSSNNLSGELPPSL-----ENLSQLTTLHLQNNQLSG-TLDVLQDL 219
           LS+N L       L     +    L  L L +   S    D LQ L
Sbjct: 404 LSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (124), Expect = 1e-07
 Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 23/102 (22%)

Query: 102 FSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLL 161
            S +RV+ L++  +  S  S                  S+ ++L     L ++ L+NN L
Sbjct: 368 GSVLRVLWLADCDVSDSSCS------------------SLAATLLANHSLRELDLSNNCL 409

Query: 162 SGEIPDAF-----QSLTGLINLDLSSNNLSGELPPSLENLSQ 198
                        Q    L  L L     S E+   L+ L +
Sbjct: 410 GDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (121), Expect = 2e-07
 Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 11/85 (12%)

Query: 169 FQSLTGLINLDLSSNNLSGE----LPPSLENLSQLTTLHLQNNQLSGT-----LDVLQDL 219
            Q  + L  L L+  ++S      L  +L     L  L L NN L        ++ ++  
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 220 P--LRDLNIENNLFSGPIPEKMLQI 242
              L  L + +  +S  + +++  +
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 4e-06
 Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 21/118 (17%)

Query: 59  WVASAGDPCGESWQGVQCNASDIIAIILNGANLGGE----LGENLGAFSSIRVIDLSNNH 114
                     E  QG+    S +  + L   ++       L   L A  S+R +DLSNN 
Sbjct: 349 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 408

Query: 115 IGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSL 172
           +G +    L  +++                     LL  + L +   S E+ D  Q+L
Sbjct: 409 LGDAGILQLVESVRQP-----------------GCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 1e-04
 Identities = 13/103 (12%), Positives = 27/103 (26%), Gaps = 19/103 (18%)

Query: 86  LNGANLGGE-LGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSS 144
           +    L      E L      +V+ L +  +  +                      I S+
Sbjct: 9   IQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCK------------------DISSA 50

Query: 145 LATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSG 187
           L     L +++L +N L               +  +   +L  
Sbjct: 51  LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 49.9 bits (117), Expect = 6e-07
 Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 12/89 (13%)

Query: 154 MSLNNNLLSGEIPDA------FQSLTGLINLDLSSNNLSGELPPSL-----ENLSQLTTL 202
           + LN+ LLS     A           GL  L L  N +  +   +L     E +  L  L
Sbjct: 248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307

Query: 203 HLQNNQLSGTLDVLQDLP-LRDLNIENNL 230
            L  N+ S   DV+ ++  +        L
Sbjct: 308 ELNGNRFSEEDDVVDEIREVFSTRGRGEL 336

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 47.6 bits (111), Expect = 3e-06
 Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 8/67 (11%)

Query: 151 LTDMSLNNNLLSGE----IPDAFQSLTGLINLDLSSNNLSGE----LPPSLENLSQLTTL 202
           +   SL  + ++ E    +         +  + LS N +  E    L  ++ +   L   
Sbjct: 5   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64

Query: 203 HLQNNQL 209
              +   
Sbjct: 65  EFSDIFT 71

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.8 bits (96), Expect = 2e-04
 Identities = 15/104 (14%), Positives = 37/104 (35%), Gaps = 17/104 (16%)

Query: 127 MQNFFLSDNQFSGSIPSSLA------TLTLLTDMSLNNNLLSGEIPDA-----FQSLTGL 175
           ++   L+D   S    +++           L  + L  N +  +          + +  L
Sbjct: 245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 304

Query: 176 INLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDL 219
           + L+L+ N    E    ++ + ++ +   +       LD L D+
Sbjct: 305 LFLELNGNRF-SEEDDVVDEIREVFSTRGRGE-----LDELDDM 342

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 11/84 (13%), Positives = 23/84 (27%), Gaps = 10/84 (11%)

Query: 171 SLTGL-INLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTL-----DVLQDLP-LRD 223
           S+ G  + LD  +      +   L     +  + L  N +         + +     L  
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 224 LNIENN---LFSGPIPEKMLQIPN 244
               +         IPE +  +  
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQ 87

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 6e-07
 Identities = 19/119 (15%), Positives = 43/119 (36%), Gaps = 7/119 (5%)

Query: 132 LSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGE-LP 190
           L+       +   L +  ++       + +   + + F S   + ++DLS++ +    L 
Sbjct: 7   LTGKNLHPDVTGRLLSQGVIA-FRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVSTLH 64

Query: 191 PSLENLSQLTTLHLQNNQLSGT-LDVLQDLP-LRDLNIE--NNLFSGPIPEKMLQIPNF 245
             L   S+L  L L+  +LS   ++ L     L  LN+   +      +   +      
Sbjct: 65  GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.1 bits (113), Expect = 8e-07
 Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 4/97 (4%)

Query: 110 LSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAF 169
           L  +    +  S L       +LS      S  + LA L+ LT +  ++N +S   P   
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--L 191

Query: 170 QSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQN 206
            SL  LI + L +N +S      L N S L  + L N
Sbjct: 192 ASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 6e-06
 Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 6/78 (7%)

Query: 165 IPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP-LRD 223
            PD   +L   I +    +N++  +  +  +L  +TTL      ++ T++ +Q L  L  
Sbjct: 13  FPDP--ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIEGVQYLNNLIG 67

Query: 224 LNIENNLFSGPIPEKMLQ 241
           L +++N  +   P K L 
Sbjct: 68  LELKDNQITDLAPLKNLT 85

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 8e-05
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 169 FQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP-LRDLNIE 227
             +L+ L  L    N +S      L +L  L  +HL+NNQ+S  +  L +   L  + + 
Sbjct: 169 LANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISD-VSPLANTSNLFIVTLT 225

Query: 228 N 228
           N
Sbjct: 226 N 226

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 4e-06
 Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 1/90 (1%)

Query: 127 MQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLS 186
           +Q  +L  N+     P  L     L  +SL NN L+         L  L  L L  N+L 
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185

Query: 187 GELPPSLENLSQLTTLHLQNNQLSGTLDVL 216
             +P        L    L  N      ++L
Sbjct: 186 -TIPKGFFGSHLLPFAFLHGNPWLCNCEIL 214

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 6e-05
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 102 FSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNN 159
            +S   ++    ++  ++P  LP       LS+N       ++L   T LT ++L+  
Sbjct: 9   VASHLEVNCDKRNLT-ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 148 LTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNN 207
           +    +++ +   L+  +P           L LS N L      +L   ++LT L+L   
Sbjct: 9   VASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 208 Q 208
           +
Sbjct: 66  E 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 8e-04
 Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 5/75 (6%)

Query: 169 FQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSG-TLDVLQDLP-LRDLNI 226
              +   + ++    NL+  LPP L      T LHL  N L   +L  L     L  LN+
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 227 ENNLFSGPIPEKMLQ 241
           +    +    +  L 
Sbjct: 63  DRAELTKLQVDGTLP 77

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 4e-06
 Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 5/111 (4%)

Query: 104 SIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSG 163
           S + +DL       S P ++   +       +  + ++      +  L  ++L+NN L  
Sbjct: 23  SQQALDLKGLR---SDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYR 79

Query: 164 --EIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGT 212
             ++    Q    L  L+LS N L  E         +L  L L  N LS T
Sbjct: 80  LDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT 130

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (104), Expect = 1e-05
 Identities = 12/44 (27%), Positives = 18/44 (40%)

Query: 165 IPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQ 208
             D F   +G + LD+S   +       LENL +L      N +
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 1/56 (1%)

Query: 104 SIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNN 159
           S RV     + +   IPS LP           +       + +    L  + ++ N
Sbjct: 9   SNRVFLCQESKVT-EIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN 63

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 7/65 (10%), Positives = 17/65 (26%), Gaps = 3/65 (4%)

Query: 127 MQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLS 186
            +     +N             +    + ++   +        ++L  L        NL 
Sbjct: 179 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK 236

Query: 187 GELPP 191
            +LP 
Sbjct: 237 -KLPT 240

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 5/93 (5%)

Query: 154 MSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTL 213
           + L   L+  E    + +      LDL    +   +      L Q   +   +N++   L
Sbjct: 1   VKLTAELI--EQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL 56

Query: 214 DVLQDLP-LRDLNIENNLFSGPIPEKMLQIPNF 245
           D    L  L+ L + NN            +P+ 
Sbjct: 57  DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 89

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 5e-05
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 165 IPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP-LRD 223
             D   +L   +   L   N++     S  +L Q+TTL      +  ++D ++ L  L  
Sbjct: 12  FTDT--ALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIK-SIDGVEYLNNLTQ 66

Query: 224 LNIENNLFSG 233
           +N  NN  + 
Sbjct: 67  INFSNNQLTD 76

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 166 PDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTL 202
                +LT L  LD+SSN +S      L  L+ L +L
Sbjct: 165 LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESL 199

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.5 bits (98), Expect = 5e-05
 Identities = 31/162 (19%), Positives = 53/162 (32%), Gaps = 27/162 (16%)

Query: 104 SIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIP----SSLATLTLLTD------ 153
               +D +   +   IP  +P+      L+DN+            L  L  L        
Sbjct: 9   EGTTVDCTGRGLK-EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67

Query: 154 ---------------MSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQ 198
                          + L  N +       F  L  L  L+L  N +S  +P S E+L+ 
Sbjct: 68  GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127

Query: 199 LTTLHLQNNQLSGTLDVLQDLPL-RDLNIENNLFSGPIPEKM 239
           LT+L+L +N  +    +       R  ++         P K+
Sbjct: 128 LTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKV 169

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 8/64 (12%), Positives = 24/64 (37%), Gaps = 4/64 (6%)

Query: 148 LTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNN 207
                  +L    ++  +      L  +  +  +++++       ++ L  +T L L  N
Sbjct: 23  FAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGN 78

Query: 208 QLSG 211
           +L+ 
Sbjct: 79  KLTD 82

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 5e-04
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 168 AFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQN 206
               LT L NL LS N++S     +L  L  L  L L +
Sbjct: 173 PLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 209

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 39.7 bits (91), Expect = 4e-04
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 11/72 (15%)

Query: 165 IPDA---FQSLTGLINLDLSSNNLSGELPP------SLENLSQLTTLHLQNNQLSGTLDV 215
           I DA   F+    ++  +     L G +PP      +L  L     L L  N +   +  
Sbjct: 7   IKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KISS 65

Query: 216 LQDLP-LRDLNI 226
           L  +  LR L++
Sbjct: 66  LSGMENLRILSL 77

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	689
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.97
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.95
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.95
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.88
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.86
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.83
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.82
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.8
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.8
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.79
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.79
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.69
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.66
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.66
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.64
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.62
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.62
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.59
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.58
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.57
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.52
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.49
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.43
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.32
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.31
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.14
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.13
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.03
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	98.97
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.91
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.79
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	98.65
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.57
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	98.41
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.06
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	98.02
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.0
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	97.75
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	97.5
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.26
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.03

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=268.01  Aligned_cols=174  Identities=18%  Similarity=0.285  Sum_probs=151.1

Q ss_pred             HCCCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEEEE
Q ss_conf             315977444471028738999993-8996999999335458856699999999998138998720001799959969999
Q 005587          507 YTNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLI  585 (689)
Q Consensus       507 ~~~~f~~~~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV  585 (689)
                      ..++|+..+.||+|+||+||+|+. .+|+.||+|++..... .....++.+|+.++++++|||||+++++|.+.++.++|
T Consensus         4 ~~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~-~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iV   82 (322)
T d1s9ja_           4 KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIK-PAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISIC   82 (322)
T ss_dssp             CGGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCC-TTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHC-HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEE
T ss_conf             75688897897127780999999989996999999875409-78999999999999867999999499999989999999


Q ss_pred             EECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCCCC
Q ss_conf             81368899889983195457899999999999999999999994999981980446898586699949998614776556
Q 005587          586 YEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS  665 (689)
Q Consensus       586 ~Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~~~  665 (689)
                      |||+++|+|.+++...    ..+++..+..++.|++.||.|||+.+  +|+||||||+|||++.++.+||+|||+|+.+.
T Consensus        83 mEy~~gg~L~~~l~~~----~~l~~~~~~~~~~qil~aL~yLH~~~--~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~  156 (322)
T d1s9ja_          83 MEHMDGGSLDQVLKKA----GRIPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLI  156 (322)
T ss_dssp             EECCTTEEHHHHHHHH----SSCCHHHHHHHHHHHHHHHHHHHHHH--CCCCSCCSGGGEEECTTCCEEECCCCCCHHHH
T ss_pred             EECCCCCCHHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHHHHC--CEECCCCCHHHEEECCCCCEEEEECCCCCCCC
T ss_conf             9767998689987424----99999999999999999999999859--99714457799468789989995487762567


Q ss_pred             CCCCCEEECCCCEEEECCCCCCC
Q ss_conf             99842011562349921102337
Q 005587          666 SGSVSQVSHNLTIMRAGGVTHRN  688 (689)
Q Consensus       666 ~~~~~~~~~~~~~~~ape~~~~~  688 (689)
                      .... ....++..|+|||++.+.
T Consensus       157 ~~~~-~~~~GT~~Y~APEvl~~~  178 (322)
T d1s9ja_         157 DSMA-NSFVGTRSYMSPERLQGT  178 (322)
T ss_dssp             HHTC----CCSSCCCCHHHHHCS
T ss_pred             CCCC-CCCCCCCCCCCCHHHCCC
T ss_conf             8862-111377141194687589

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=0  Score=255.86  Aligned_cols=172  Identities=20%  Similarity=0.347  Sum_probs=152.9

Q ss_pred             CCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEEEEEE
Q ss_conf             5977444471028738999993-899699999933545885669999999999813899872000179995996999981
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV~E  587 (689)
                      ++|.+.+.||+|+||.||+|+. .+|+.||||++....  ....+.+.+|+.++++++|||||++++++.+.+..++|||
T Consensus        26 ~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~--~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE  103 (350)
T d1koaa2          26 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPH--ESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYE  103 (350)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCS--HHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCC--HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf             57589889840768199999988999899999984524--3169999999999986799799929999998999999998


Q ss_pred             CCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECC--CCCEEEEEECCCCCCC
Q ss_conf             36889988998319545789999999999999999999999499998198044689858669--9949998614776556
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDD--DLAVSVSDCGLAPLIS  665 (689)
Q Consensus       588 y~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~--~~~~ki~DFGla~~~~  665 (689)
                      ||++|+|.+++...   ...+++..+..|+.|++.||.|||+.   +|+||||||+|||++.  ++.+||+|||+|+.+.
T Consensus       104 ~~~gg~L~~~l~~~---~~~l~e~~~~~i~~qi~~aL~ylH~~---~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~  177 (350)
T d1koaa2         104 FMSGGELFEKVADE---HNKMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLD  177 (350)
T ss_dssp             CCCSCBHHHHHTCT---TSCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTSCCEEECCCTTCEECC
T ss_pred             CCCCCCHHHHHHHH---CCCCCHHHHHHHHHHHHHHHHHHHHC---CCEEEEECHHHEEECCCCCCEEEEEECCHHEECC
T ss_conf             57998899999762---37899999999999999999999756---9760001546736416889869995452104425


Q ss_pred             CCCCCEEECCCCEEEECCCCCCC
Q ss_conf             99842011562349921102337
Q 005587          666 SGSVSQVSHNLTIMRAGGVTHRN  688 (689)
Q Consensus       666 ~~~~~~~~~~~~~~~ape~~~~~  688 (689)
                      .........++..|+|||++.+.
T Consensus       178 ~~~~~~~~~gT~~Y~aPEv~~~~  200 (350)
T d1koaa2         178 PKQSVKVTTGTAEFAAPEVAEGK  200 (350)
T ss_dssp             TTSCEEEECSCTTTCCHHHHHTC
T ss_pred             CCCCCCEECCCCCCCCHHHHCCC
T ss_conf             65432000686242188997589

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=260.60  Aligned_cols=173  Identities=24%  Similarity=0.318  Sum_probs=149.4

Q ss_pred             CCCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEEEEE
Q ss_conf             15977444471028738999993-89969999993354588566999999999981389987200017999599699998
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       508 ~~~f~~~~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV~  586 (689)
                      .++|+..+.||+|+||+||+|+. .+|+.||||++..... ....+.+.+|+.++++++|||||++++++.+.+..++||
T Consensus         4 ~~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~-~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivm   82 (271)
T d1nvra_           4 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA-VDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFL   82 (271)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC--------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             CCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHC-CHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEE
T ss_conf             7460899897217480999999999997999999845664-127999999999998579988846965404674367988


Q ss_pred             ECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCCCCC
Q ss_conf             13688998899831954578999999999999999999999949999819804468985866999499986147765569
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~~~~  666 (689)
                      ||+++|+|.+++..    ...+++.....|+.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+|+.+..
T Consensus        83 Ey~~gg~L~~~l~~----~~~l~e~~~~~i~~qi~~al~ylH~~---~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~  155 (271)
T d1nvra_          83 EYCSGGELFDRIEP----DIGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRY  155 (271)
T ss_dssp             ECCTTEEGGGGSBT----TTBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECEE
T ss_pred             ECCCCCCHHHHHHC----CCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHEEECCCCCEEECCCHHHEEECC
T ss_conf             64589808999753----79999999999999999999999975---983575468997887899879832314224046


Q ss_pred             CCC---CEEECCCCEEEECCCCCCC
Q ss_conf             984---2011562349921102337
Q 005587          667 GSV---SQVSHNLTIMRAGGVTHRN  688 (689)
Q Consensus       667 ~~~---~~~~~~~~~~~ape~~~~~  688 (689)
                      ...   .....+|..|+|||++.++
T Consensus       156 ~~~~~~~~~~~GT~~Y~APE~~~~~  180 (271)
T d1nvra_         156 NNRERLLNKMCGTLPYVAPELLKRR  180 (271)
T ss_dssp             TTEECCBCCCCSCGGGSCTHHHHCS
T ss_pred             CCCCCCCCCEEECCCCCCHHHHCCC
T ss_conf             8865311132557474287286189

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=0  Score=254.43  Aligned_cols=172  Identities=21%  Similarity=0.348  Sum_probs=153.2

Q ss_pred             CCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEEEEEE
Q ss_conf             5977444471028738999993-899699999933545885669999999999813899872000179995996999981
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV~E  587 (689)
                      ++|++.+.||+|+||.||+|+. .+|+.||||.+....  ......+.+|+.++++++|||||++++++.+.+..++|||
T Consensus        29 d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~--~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE  106 (352)
T d1koba_          29 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPY--PLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILE  106 (352)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS--HHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEE
T ss_pred             CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCC--HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf             03599899931778299999998999799999988726--4679999999999986799798919999998999999998


Q ss_pred             CCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEEC--CCCCEEEEEECCCCCCC
Q ss_conf             3688998899831954578999999999999999999999949999819804468985866--99949998614776556
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLD--DDLAVSVSDCGLAPLIS  665 (689)
Q Consensus       588 y~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld--~~~~~ki~DFGla~~~~  665 (689)
                      ||++|+|.+.+...   ...+++.....|+.|++.||.|||+.   +|+||||||+|||++  .++.+||+|||+|+.+.
T Consensus       107 ~~~gg~L~~~~~~~---~~~l~e~~~~~i~~qi~~aL~ylH~~---~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~  180 (352)
T d1koba_         107 FLSGGELFDRIAAE---DYKMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATKLN  180 (352)
T ss_dssp             CCCCCBHHHHTTCT---TCCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCCTTCEECC
T ss_pred             CCCCCHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCCCCCCCCCCCCCCCEEEEEECCCCEECC
T ss_conf             28998088889863---89989999999999999999999977---9265131445531134678848995256303437


Q ss_pred             CCCCCEEECCCCEEEECCCCCCC
Q ss_conf             99842011562349921102337
Q 005587          666 SGSVSQVSHNLTIMRAGGVTHRN  688 (689)
Q Consensus       666 ~~~~~~~~~~~~~~~ape~~~~~  688 (689)
                      .........++..|+|||++.++
T Consensus       181 ~~~~~~~~~gt~~y~aPE~~~~~  203 (352)
T d1koba_         181 PDEIVKVTTATAEFAAPEIVDRE  203 (352)
T ss_dssp             TTSCEEEECSSGGGCCHHHHTTC
T ss_pred             CCCCEEECCCCCCCCCHHHHCCC
T ss_conf             88720100476453489997479

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=255.50  Aligned_cols=170  Identities=23%  Similarity=0.356  Sum_probs=149.2

Q ss_pred             CCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEEEEEE
Q ss_conf             5977444471028738999993-899699999933545885669999999999813899872000179995996999981
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV~E  587 (689)
                      ++|...+.||+|+||+||+|+. .+|+.||||++.....  ...+.+.+|+.++++++|||||++++++.+.+..++|||
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE   97 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQ--PKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVME   97 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGC--SCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCCEEEEEEECCCCCEEEEEEECCCCCEEEEEEEECCCC--HHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEEEEEE
T ss_conf             053887898128582999999989998999999843017--279999999999986799988058577988999899997


Q ss_pred             CCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCCCCCC
Q ss_conf             36889988998319545789999999999999999999999499998198044689858669994999861477655699
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~~~~~  667 (689)
                      |+++|+|.+++..     ..+++.....|+.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+|+.+...
T Consensus        98 y~~gg~L~~~~~~-----~~l~~~~~~~i~~qi~~aL~yLH~~---~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~  169 (293)
T d1yhwa1          98 YLAGGSLTDVVTE-----TCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE  169 (293)
T ss_dssp             CCTTCBHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCST
T ss_pred             ECCCCCHHHHHHC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHEEECCCCCEEECCCHHHEEECCC
T ss_conf             0379808988641-----5999999999999999999999987---9722677688868878996864251564132136


Q ss_pred             C-CCEEECCCCEEEECCCCCCC
Q ss_conf             8-42011562349921102337
Q 005587          668 S-VSQVSHNLTIMRAGGVTHRN  688 (689)
Q Consensus       668 ~-~~~~~~~~~~~~ape~~~~~  688 (689)
                      . ......++..|+|||++.++
T Consensus       170 ~~~~~~~~gt~~Y~aPE~~~~~  191 (293)
T d1yhwa1         170 QSKRSTMVGTPYWMAPEVVTRK  191 (293)
T ss_dssp             TCCBCCCCSCGGGCCHHHHSSS
T ss_pred             CCCCCCCCCCCCCCCHHHHCCC
T ss_conf             6644444447773682664479

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=0  Score=256.03  Aligned_cols=218  Identities=25%  Similarity=0.535  Sum_probs=191.7

Q ss_pred             CCCHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCEEEECC----CEEEEEECCCCCCC--CCCCCCCCCCCCCE
Q ss_conf             69986699999999980999-9999989999999999862793099----86799914998876--45735569999979
Q 005587           35 VTNPNDVAAINSLYAALGSP-VLPGWVASAGDPCGESWQGVQCNAS----DIIAIILNGANLGG--ELGENLGAFSSIRV  107 (689)
Q Consensus        35 ~~~~~~~~aL~~~~~~l~~~-~l~~W~~~~~~~C~~~w~gv~C~~~----~v~~l~L~~~~l~g--~lp~~l~~L~~L~~  107 (689)
                      .|.++|++||++||+++.+| .+.+|+. ++|||.++|.||+|+..    +|+.|+|.++++.|  .+|+.+++|++|++
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~~l~sW~~-~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~   80 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPTTLSSWLP-TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF   80 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCGGGTTCCT-TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCHHHHCCCCCCC
T ss_conf             9898999999999997799986778899-999988948896974899947988998989988888879847846753352


Q ss_pred             EECCC-CCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCC
Q ss_conf             98317-868997788632--354530035755789999656799976699846886787787111299999789832787
Q 005587          108 IDLSN-NHIGGSIPSILP--VTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNN  184 (689)
Q Consensus       108 L~Ls~-N~l~g~ip~~~~--~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~  184 (689)
                      |+|++ |++.|.+|..+.  .+|++|+|++|++.+..+..+..+..|+.+++++|.+.+.+|..+..++.|+.+++++|.
T Consensus        81 L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~  160 (313)
T d1ogqa_          81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR  160 (313)
T ss_dssp             EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCC
T ss_conf             02026543330024311454200110203564344332222201110011112245555685122067400000023553


Q ss_pred             CCCCCCCCCCCCCCC-CEEECCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCC
Q ss_conf             877789875477665-556611444555532-13774335212556547899761158988732---3688678
Q 005587          185 LSGELPPSLENLSQL-TTLHLQNNQLSGTLD-VLQDLPLRDLNIENNLFSGPIPEKMLQIPNFR---KDGNPFN  253 (689)
Q Consensus       185 l~g~ip~~~~~l~~L-~~L~Ls~N~l~g~~~-~~~~~~L~~L~ls~N~l~g~~P~~l~~l~~l~---~~~n~~~  253 (689)
                      +.+.+|..+..+..+ +.+++++|++++..+ .+..+....++++.|.+.|.+|..+..+..+.   ..+|.+.
T Consensus       161 l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~  234 (313)
T d1ogqa_         161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA  234 (313)
T ss_dssp             CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             35620312144311232310224643533243322222223333334332222222222222111222222222

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=258.87  Aligned_cols=180  Identities=22%  Similarity=0.368  Sum_probs=152.9

Q ss_pred             CCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEE--CCEEEEE
Q ss_conf             5977444471028738999993-899699999933545885669999999999813899872000179995--9969999
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAE--HGQRLLI  585 (689)
Q Consensus       509 ~~f~~~~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~--~~~~~lV  585 (689)
                      ++|++.+.||+|+||.||+|+. .+|+.||||.+......+.....+.+|++++++++|||||++++++.+  .+..++|
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~iv   83 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIV   83 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEE
T ss_pred             HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEE
T ss_conf             33799679830889199999999999799999987465797999999999999997789998248999991789989999


Q ss_pred             EECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCCCEEECCCCCCEEECCCCCEEEEEECCCCC
Q ss_conf             8136889988998319545789999999999999999999999499--99819804468985866999499986147765
Q 005587          586 YEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEIC--QPPIVHRNFKSANILLDDDLAVSVSDCGLAPL  663 (689)
Q Consensus       586 ~Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~--~~~IiHrDlkp~NILld~~~~~ki~DFGla~~  663 (689)
                      ||||++|+|.+++.........+++..++.|+.|++.||.|||+..  ..+|+||||||+|||++.++.+||+|||+|+.
T Consensus        84 mEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~~  163 (269)
T d2java1          84 MEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARI  163 (269)
T ss_dssp             EECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHHH
T ss_pred             EECCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHCCCCCCCCEEEEECCCEEE
T ss_conf             95689993899998515457899999999999999999999997167788788586765425747888579800100032


Q ss_pred             CCCCC-CCEEECCCCEEEECCCCCCC
Q ss_conf             56998-42011562349921102337
Q 005587          664 ISSGS-VSQVSHNLTIMRAGGVTHRN  688 (689)
Q Consensus       664 ~~~~~-~~~~~~~~~~~~ape~~~~~  688 (689)
                      +.... ......++..|+|||++.++
T Consensus       164 ~~~~~~~~~~~~gt~~Y~APE~l~~~  189 (269)
T d2java1         164 LNHDTSFAKAFVGTPYYMSPEQMNRM  189 (269)
T ss_dssp             C-----------CCCSCCCHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHCCC
T ss_conf             24577755667788232799998399

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=256.34  Aligned_cols=171  Identities=30%  Similarity=0.446  Sum_probs=146.1

Q ss_pred             CCCCCCCCEEEECCCEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEEEEEE
Q ss_conf             15977444471028738999993899699999933545885669999999999813899872000179995996999981
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       508 ~~~f~~~~~lG~G~~g~Vy~~~~~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV~E  587 (689)
                      .++|...+.||+|+||+||+|++.  ..||||.+..........+.|.+|+.++.+++|||||++++++.+ +..++|||
T Consensus         7 ~~~~~~~~~lG~G~fg~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~-~~~~lv~E   83 (276)
T d1uwha_           7 DGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA-PQLAIVTQ   83 (276)
T ss_dssp             TTCCCCCSEEEECSSCEEEEEESS--SEEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred             CCCEEEEEEEEECCCCEEEEEEEC--CEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEEEEEE
T ss_conf             451899889830788589999999--989999997346998999999999999984799878645679715-58999996


Q ss_pred             CCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCCCCCC
Q ss_conf             36889988998319545789999999999999999999999499998198044689858669994999861477655699
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~~~~~  667 (689)
                      |+++|+|.++++..   ...++|..++.|+.|+++||.|||+.   +|+||||||+|||++.++.+||+|||+|+.....
T Consensus        84 y~~~g~L~~~l~~~---~~~~~~~~~~~i~~qi~~gl~yLH~~---~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~  157 (276)
T d1uwha_          84 WCEGSSLYHHLHII---ETKFEMIKLIDIARQTAQGMDYLHAK---SIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRW  157 (276)
T ss_dssp             CCCEEEHHHHHHTS---CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTSSEEECCCCCSCC----
T ss_pred             CCCCCCHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHCC---CEECCCCCHHHEEECCCCCEEECCCCCEEECCCC
T ss_conf             58998889998523---57899999999999999998887509---9951614789979818997887500221333556


Q ss_pred             CCC---EEECCCCEEEECCCCCC
Q ss_conf             842---01156234992110233
Q 005587          668 SVS---QVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       668 ~~~---~~~~~~~~~~ape~~~~  687 (689)
                      ...   ....++..|+|||++.+
T Consensus       158 ~~~~~~~~~~gt~~y~APE~l~~  180 (276)
T d1uwha_         158 SGSHQFEQLSGSILWMAPEVIRM  180 (276)
T ss_dssp             --------CCCCGGGCCHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHC
T ss_conf             77631256655743179999950

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=0  Score=256.84  Aligned_cols=172  Identities=24%  Similarity=0.447  Sum_probs=144.1

Q ss_pred             CCCCCCCEEEECCCEEEEEEEEC-CC---CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEEE
Q ss_conf             59774444710287389999938-99---699999933545885669999999999813899872000179995996999
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DG---KLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLL  584 (689)
Q Consensus       509 ~~f~~~~~lG~G~~g~Vy~~~~~-~g---~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~l  584 (689)
                      ++|+..++||+|+||+||+|+.+ ++   ..||||++.... .....++|.+|+.++++++|||||+++|+|...+..++
T Consensus        26 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~i  104 (299)
T d1jpaa_          26 SCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGY-TEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMI  104 (299)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEE
T ss_pred             HHCEEEEEEEECCCEEEEEEEEECCCCEEEEEEEEEECCCC-CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf             04278569802788299999995799788999999978445-98999999999999985799888618999962887799


Q ss_pred             EEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCCC
Q ss_conf             98136889988998319545789999999999999999999999499998198044689858669994999861477655
Q 005587          585 IYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI  664 (689)
Q Consensus       585 V~Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~~  664 (689)
                      |||||++|+|.+++...   ...++|..++.|+.|+++||.|||+.   +|+||||||+|||++.++.+||+|||+|+.+
T Consensus       105 v~Ey~~~g~L~~~~~~~---~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~  178 (299)
T d1jpaa_         105 ITEFMENGSLDSFLRQN---DGQFTVIQLVGMLRGIAAGMKYLADM---NYVHRDLAARNILVNSNLVCKVSDFGLSRFL  178 (299)
T ss_dssp             EEECCTTEEHHHHHHTT---TTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC------
T ss_pred             EEEECCCCCCEEEECCC---CCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCEEEECCCCCEEECCCCCCEEC
T ss_conf             99722798530021045---67999999999999999988988527---9835761504489889991998884431575


Q ss_pred             CCCCCCEE------ECCCCEEEECCCCCC
Q ss_conf             69984201------156234992110233
Q 005587          665 SSGSVSQV------SHNLTIMRAGGVTHR  687 (689)
Q Consensus       665 ~~~~~~~~------~~~~~~~~ape~~~~  687 (689)
                      ........      ..++..|+|||++.+
T Consensus       179 ~~~~~~~~~~~~~~~~~t~~y~aPE~~~~  207 (299)
T d1jpaa_         179 EDDTSDPTYTSALGGKIPIRWTAPEAIQY  207 (299)
T ss_dssp             -----------------CGGGSCHHHHHS
T ss_pred             CCCCCCCEEEECCCCCCCCCCCCHHHHHC
T ss_conf             67777653650256668830038788836

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=257.44  Aligned_cols=171  Identities=22%  Similarity=0.400  Sum_probs=149.3

Q ss_pred             CCCCCCCEEEECCCEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEEEEEEC
Q ss_conf             59774444710287389999938996999999335458856699999999998138998720001799959969999813
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       509 ~~f~~~~~lG~G~~g~Vy~~~~~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV~Ey  588 (689)
                      ++|+..+.||+|+||+||+|++.+++.||||++....   ...++|.+|+..+.+++|||||+++|+|...+..++||||
T Consensus         5 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~---~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~   81 (263)
T d1sm2a_           5 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA---MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEF   81 (263)
T ss_dssp             SCEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSSS---SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred             HHCEEEEEEEECCCEEEEEEEECCCCEEEEEEECCCC---CCHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCEEEEEEE
T ss_conf             9958888982088829999998899999999987886---7689999999999966899756535243159933799983


Q ss_pred             CCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCCCCCCC
Q ss_conf             68899889983195457899999999999999999999994999981980446898586699949998614776556998
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~~~~~~  668 (689)
                      +++|+|.+++...   ...++|..++.|+.|+|.||.|||+.   +|+||||||+|||+|.++.+||+|||+|+.+....
T Consensus        82 ~~~g~L~~~l~~~---~~~~~~~~~~~i~~qia~gl~~lH~~---~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~  155 (263)
T d1sm2a_          82 MEHGCLSDYLRTQ---RGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ  155 (263)
T ss_dssp             CTTCBHHHHHHTT---TTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCTTCSGGGEEECGGGCEEECSCC---------
T ss_pred             CCCCCHHHHHHCC---CCCCCHHHHHHHHHHHHHHHHHHHCC---CEEECCCCHHHEEECCCCCEEECCCCHHEECCCCC
T ss_conf             6999189975201---34788999999999999987765316---43104431532666688776865532100236887


Q ss_pred             CCE--EECCCCEEEECCCCCCC
Q ss_conf             420--11562349921102337
Q 005587          669 VSQ--VSHNLTIMRAGGVTHRN  688 (689)
Q Consensus       669 ~~~--~~~~~~~~~ape~~~~~  688 (689)
                      ...  ...++..|+|||++.++
T Consensus       156 ~~~~~~~~gt~~y~aPE~l~~~  177 (263)
T d1sm2a_         156 YTSSTGTKFPVKWASPEVFSFS  177 (263)
T ss_dssp             ---------CTTSCCHHHHTTC
T ss_pred             CEEECCEECCCCCCCHHHHCCC
T ss_conf             3350430017666785786079

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=0  Score=259.30  Aligned_cols=172  Identities=25%  Similarity=0.394  Sum_probs=147.9

Q ss_pred             CCCCCCCCEEEECCCEEEEEEEEC-CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEEEEE
Q ss_conf             159774444710287389999938-9969999993354588566999999999981389987200017999599699998
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       508 ~~~f~~~~~lG~G~~g~Vy~~~~~-~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV~  586 (689)
                      .++|...+.||+|+||+||+|+.. +++.||||++....   ...++|.+|+.++++++|||||+++++|.+.+..++||
T Consensus        16 ~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~---~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~   92 (287)
T d1opja_          16 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT---MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIT   92 (287)
T ss_dssp             GGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTC---SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             HHHEEEEEEEEECCCEEEEEEEECCCCEEEEEEEECCCC---CHHHHHHHHHHHHHHCCCCCEECCCCCEEECCEEEEEE
T ss_conf             799398659820888089999999999699999977761---03999999999998679998826775274578547876


Q ss_pred             ECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCCCCC
Q ss_conf             13688998899831954578999999999999999999999949999819804468985866999499986147765569
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~~~~  666 (689)
                      ||+++|+|.+++....  ...++|..++.|+.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+|+.+..
T Consensus        93 E~~~~g~l~~~l~~~~--~~~~~~~~~~~i~~qi~~gL~yLH~~---~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~  167 (287)
T d1opja_          93 EFMTYGNLLDYLRECN--RQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTG  167 (287)
T ss_dssp             ECCTTCBHHHHHHHSC--TTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCCTTTCCS
T ss_pred             ECCCCCCHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCEEEECCCCCEEECCCCCEEECCC
T ss_conf             3146760677753035--54157999999999999978889878---930576045768998999289832445465378


Q ss_pred             CCCCEE--ECCCCEEEECCCCCC
Q ss_conf             984201--156234992110233
Q 005587          667 GSVSQV--SHNLTIMRAGGVTHR  687 (689)
Q Consensus       667 ~~~~~~--~~~~~~~~ape~~~~  687 (689)
                      ......  ..++..|+|||++.+
T Consensus       168 ~~~~~~~~~~g~~~y~aPE~~~~  190 (287)
T d1opja_         168 DTYTAHAGAKFPIKWTAPESLAY  190 (287)
T ss_dssp             SSSEEETTEEECGGGCCHHHHHH
T ss_pred             CCCEEECCCCCCCCCCCHHHHCC
T ss_conf             87221035566546669278727

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-45  Score=253.26  Aligned_cols=173  Identities=25%  Similarity=0.302  Sum_probs=150.2

Q ss_pred             CCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCC-HHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEEEEE
Q ss_conf             5977444471028738999993-89969999993354588-566999999999981389987200017999599699998
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASS-QQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV~  586 (689)
                      ++|+..+.||+|+||.||+|+. .+|+.||||++.+.... ......+.+|+.++++++|||||++++++.+.+..++||
T Consensus         5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv~   84 (337)
T d1o6la_           5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVM   84 (337)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCE
T ss_conf             74289889831768499999998999899999981565449799999999999998679998877876403564211100


Q ss_pred             ECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCCCCC
Q ss_conf             13688998899831954578999999999999999999999949999819804468985866999499986147765569
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~~~~  666 (689)
                      |||++|+|.+++..    ...+++.....++.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+|+.+..
T Consensus        85 ey~~gg~L~~~~~~----~~~~~e~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~  157 (337)
T d1o6la_          85 EYANGGELFFHLSR----ERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGIS  157 (337)
T ss_dssp             ECCTTCBHHHHHHH----HSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC
T ss_pred             ECCCCCCHHHHHHC----CCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHEEECCCCCEEEEECCCCCCCCC
T ss_conf             03579860555532----56775999999999996521134315---962246477784765899888820565200356


Q ss_pred             -CCCCEEECCCCEEEECCCCCCC
Q ss_conf             -9842011562349921102337
Q 005587          667 -GSVSQVSHNLTIMRAGGVTHRN  688 (689)
Q Consensus       667 -~~~~~~~~~~~~~~ape~~~~~  688 (689)
                       ........++..|+|||++.+.
T Consensus       158 ~~~~~~~~~GT~~Y~aPE~~~~~  180 (337)
T d1o6la_         158 DGATMKTFCGTPEYLAPEVLEDN  180 (337)
T ss_dssp             TTCCBCCCEECGGGCCGGGGSSS
T ss_pred             CCCCCCCCEECHHHHHHHHCCCC
T ss_conf             78620551008899666650489

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=253.80  Aligned_cols=172  Identities=24%  Similarity=0.311  Sum_probs=149.4

Q ss_pred             CCCCCCCEEEECCCEEEEEEEEC-CCCEEEEEEECCCCCC-HHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEEEEE
Q ss_conf             59774444710287389999938-9969999993354588-566999999999981389987200017999599699998
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASS-QQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~lG~G~~g~Vy~~~~~-~g~~vAVK~i~~~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV~  586 (689)
                      ++|.+.+.||+|+||.||+|+.+ +++.||+|.+...... ......+.+|+.++++++|||||++++++.+.+..++||
T Consensus         6 ~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~ivm   85 (263)
T d2j4za1           6 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLIL   85 (263)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEE
T ss_conf             37699889851778589999998999499999981688567689999999999998568888885999999899989998


Q ss_pred             ECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCCCCC
Q ss_conf             13688998899831954578999999999999999999999949999819804468985866999499986147765569
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~~~~  666 (689)
                      ||+++|+|.+++..    ...+++.....|+.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+|+....
T Consensus        86 Ey~~~g~L~~~l~~----~~~l~e~~~~~i~~qi~~al~~lH~~---~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~  158 (263)
T d2j4za1          86 EYAPLGTVYRELQK----LSKFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPS  158 (263)
T ss_dssp             ECCTTCBHHHHHHH----HSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCSCSCCCC
T ss_pred             EECCCCCHHHHHHH----CCCCCHHHHHHHHHHHHHHHHHHHHC---CEEEEEECCCCCEECCCCCEEECCCCEEEECCC
T ss_conf             50479858988750----48999999999999999999999988---946522023441466899871155563354488


Q ss_pred             CCCCEEECCCCEEEECCCCCCC
Q ss_conf             9842011562349921102337
Q 005587          667 GSVSQVSHNLTIMRAGGVTHRN  688 (689)
Q Consensus       667 ~~~~~~~~~~~~~~ape~~~~~  688 (689)
                      ... ....++..|+|||++.+.
T Consensus       159 ~~~-~~~~Gt~~Y~APE~~~~~  179 (263)
T d2j4za1         159 SRR-TTLCGTLDYLPPEMIEGR  179 (263)
T ss_dssp             CCC-EETTEEGGGCCHHHHTTC
T ss_pred             CCC-CCCCCCCCCCCHHHHCCC
T ss_conf             852-355788763499997589

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-45  Score=250.03  Aligned_cols=173  Identities=22%  Similarity=0.320  Sum_probs=145.6

Q ss_pred             CCCCCEEEECCCEEEEEEEEC-CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEE----CCEEEEE
Q ss_conf             774444710287389999938-99699999933545885669999999999813899872000179995----9969999
Q 005587          511 FSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAE----HGQRLLI  585 (689)
Q Consensus       511 f~~~~~lG~G~~g~Vy~~~~~-~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~----~~~~~lV  585 (689)
                      |+..+.||+|+||+||+|+.. ++..||+|.+..........+.+.+|++++++++|||||++++++..    ....++|
T Consensus        11 ~~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~iv   90 (270)
T d1t4ha_          11 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLV   90 (270)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEE
T ss_pred             EEEEEEEECCCCCEEEEEEECCCCEEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCEEEEE
T ss_conf             88516970082849999999999959999998512279899999999999998579998506999984033458889999


Q ss_pred             EECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEEC-CCCCEEEEEECCCCCC
Q ss_conf             813688998899831954578999999999999999999999949999819804468985866-9994999861477655
Q 005587          586 YEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLD-DDLAVSVSDCGLAPLI  664 (689)
Q Consensus       586 ~Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld-~~~~~ki~DFGla~~~  664 (689)
                      |||+++|+|.+++..    ...+++..+..++.|++.||.|||+. .++|+||||||+|||++ +++.+||+|||+|+..
T Consensus        91 mE~~~~g~L~~~l~~----~~~~~~~~~~~~~~qi~~gl~yLH~~-~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~  165 (270)
T d1t4ha_          91 TELMTSGTLKTYLKR----FKVMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLK  165 (270)
T ss_dssp             EECCCSCBHHHHHHH----HSSCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGC
T ss_pred             EECCCCCCHHHHHHC----CCCCCHHHHHHHHHHHHHHHHHHHHC-CCCEEECCCCHHHCEEECCCCCEEEEECCCCEEC
T ss_conf             957898948999751----35546999999999999999999978-9979968767435116679998898005765423


Q ss_pred             CCCCCCEEECCCCEEEECCCCCCCC
Q ss_conf             6998420115623499211023379
Q 005587          665 SSGSVSQVSHNLTIMRAGGVTHRNF  689 (689)
Q Consensus       665 ~~~~~~~~~~~~~~~~ape~~~~~~  689 (689)
                      .... .....++..|+|||++...|
T Consensus       166 ~~~~-~~~~~GT~~Y~aPE~~~~~~  189 (270)
T d1t4ha_         166 RASF-AKAVIGTPEFMAPEMYEEKY  189 (270)
T ss_dssp             CTTS-BEESCSSCCCCCGGGGGTCC
T ss_pred             CCCC-CCCCCCCCCCCCHHHHCCCC
T ss_conf             6876-67755381300898847899

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=256.22  Aligned_cols=171  Identities=26%  Similarity=0.406  Sum_probs=145.7

Q ss_pred             CCCCCCCCEEEECCCEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEEEEEE
Q ss_conf             15977444471028738999993899699999933545885669999999999813899872000179995996999981
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       508 ~~~f~~~~~lG~G~~g~Vy~~~~~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV~E  587 (689)
                      .++|+..+.||+|+||.||+|++++++.||||++....   ...++|.+|+.++.+++|||||+++|++.+ +..++|||
T Consensus        12 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~---~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~-~~~~iv~E   87 (272)
T d1qpca_          12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS---MSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITE   87 (272)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS---SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred             HHHEEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCC---CCHHHHHHHHHHHHHCCCCCEEEEEEEECC-CCEEEEEE
T ss_conf             89938867981079828999999999999999986476---888999999999986799988578731045-97699999


Q ss_pred             CCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCCCCCC
Q ss_conf             36889988998319545789999999999999999999999499998198044689858669994999861477655699
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~~~~~  667 (689)
                      |+++|+|.+++....  ...++|..+++|+.||++||.|||+.   +|+||||||+|||++.++.+||+|||+|+.+...
T Consensus        88 y~~~g~L~~~~~~~~--~~~l~~~~~~~i~~qi~~gl~~lH~~---~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~  162 (272)
T d1qpca_          88 YMENGSLVDFLKTPS--GIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDN  162 (272)
T ss_dssp             CCTTCBHHHHTTSHH--HHTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECSSS
T ss_pred             ECCCCCHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHEEEECCCCEEECCCCCEEECCCC
T ss_conf             578982888875147--89887889999999999999999748---9546756422515620244042341014773588


Q ss_pred             CCCE--EECCCCEEEECCCCCC
Q ss_conf             8420--1156234992110233
Q 005587          668 SVSQ--VSHNLTIMRAGGVTHR  687 (689)
Q Consensus       668 ~~~~--~~~~~~~~~ape~~~~  687 (689)
                      ....  ...++..|+|||++.+
T Consensus       163 ~~~~~~~~~gt~~y~APE~~~~  184 (272)
T d1qpca_         163 EYTAREGAKFPIKWTAPEAINY  184 (272)
T ss_dssp             CEECCTTCCCCTTTSCHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCHHHHHC
T ss_conf             6442035677444458289837

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=0  Score=256.33  Aligned_cols=174  Identities=27%  Similarity=0.406  Sum_probs=152.3

Q ss_pred             HCCCCCCCCEEEECCCEEEEEEEEC-CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEEEE
Q ss_conf             3159774444710287389999938-996999999335458856699999999998138998720001799959969999
Q 005587          507 YTNSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLI  585 (689)
Q Consensus       507 ~~~~f~~~~~lG~G~~g~Vy~~~~~-~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV  585 (689)
                      ..+.|+..+.||+|+||+||+|+.. +++.||||.+..... ......+.+|+.++++++|||||++++++.+.+..++|
T Consensus         7 i~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~-~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lv   85 (307)
T d1a06a_           7 IRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKAL-EGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLI   85 (307)
T ss_dssp             GGGTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC-----------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CCCCEEEEEEEEECCCEEEEEEEECCCCCEEEEEEECHHHH-HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEE
T ss_conf             76666998899406583999999999998999999815773-12899999999999867998999198999989988898


Q ss_pred             EECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEEC---CCCCEEEEEECCCC
Q ss_conf             813688998899831954578999999999999999999999949999819804468985866---99949998614776
Q 005587          586 YEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLD---DDLAVSVSDCGLAP  662 (689)
Q Consensus       586 ~Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld---~~~~~ki~DFGla~  662 (689)
                      ||||+||+|.+++..    ...+++.....|+.|++.||.|||+.   +|+||||||+|||+.   +++.+||+|||+|+
T Consensus        86 mE~~~gg~L~~~l~~----~~~l~e~~~~~~~~qi~~al~ylH~~---~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~  158 (307)
T d1a06a_          86 MQLVSGGELFDRIVE----KGFYTERDASRLIFQVLDAVKYLHDL---GIVHRDLKPENLLYYSLDEDSKIMISDFGLSK  158 (307)
T ss_dssp             ECCCCSCBHHHHHHT----CSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCCEEECCC----
T ss_pred             EECCCCCCHHHHHHC----CCCCCHHHHHHHHHHHHHHHHHHHHC---EEEEEEECCCCEEECCCCCCCEEEEECCCEEE
T ss_conf             852689848886530----36788789999999999998752413---05568704630011046888249983154358


Q ss_pred             CCCCCCCCEEECCCCEEEECCCCCCC
Q ss_conf             55699842011562349921102337
Q 005587          663 LISSGSVSQVSHNLTIMRAGGVTHRN  688 (689)
Q Consensus       663 ~~~~~~~~~~~~~~~~~~ape~~~~~  688 (689)
                      ............++..|+|||++.++
T Consensus       159 ~~~~~~~~~~~~GT~~y~APE~~~~~  184 (307)
T d1a06a_         159 MEDPGSVLSTACGTPGYVAPEVLAQK  184 (307)
T ss_dssp             --------------CTTSCHHHHTTC
T ss_pred             ECCCCCEEEEEEECCCCCCCHHHCCC
T ss_conf             72589704400328422591887379

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.8e-45  Score=251.00  Aligned_cols=168  Identities=26%  Similarity=0.390  Sum_probs=146.4

Q ss_pred             CCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCCH-HHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEEEEE
Q ss_conf             5977444471028738999993-899699999933545885-66999999999981389987200017999599699998
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQ-QKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~~-~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV~  586 (689)
                      +.|+..+.||+|+||.||+|+. .+++.||||++....... .....+.+|+.++++++|||||++++++.+.+..++||
T Consensus        15 ~~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~   94 (309)
T d1u5ra_          15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM   94 (309)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEEEEE
T ss_conf             85676279701888099999998999399999984444358899999999999999778999823899999899889999


Q ss_pred             ECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCCCCC
Q ss_conf             13688998899831954578999999999999999999999949999819804468985866999499986147765569
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~~~~  666 (689)
                      |||++|+|..++..    ...+++..+..|+.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+|+....
T Consensus        95 E~~~~g~l~~~~~~----~~~l~e~~~~~i~~qi~~aL~yLH~~---~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~  167 (309)
T d1u5ra_          95 EYCLGSASDLLEVH----KKPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP  167 (309)
T ss_dssp             ECCSEEHHHHHHHH----TSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCTTCBSSSS
T ss_pred             EECCCCCHHHHHHH----CCCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCCCEEEECCCCCEEEEECCCCCCCCC
T ss_conf             80699945789973----79999999999999999999999868---976667884217987999789844365334677


Q ss_pred             CCCCEEECCCCEEEECCCCC
Q ss_conf             98420115623499211023
Q 005587          667 GSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       667 ~~~~~~~~~~~~~~ape~~~  686 (689)
                      ..   ...++..|+|||++.
T Consensus       168 ~~---~~~GT~~Y~APE~~~  184 (309)
T d1u5ra_         168 AN---SFVGTPYWMAPEVIL  184 (309)
T ss_dssp             BC---CCCSCGGGCCHHHHT
T ss_pred             CC---CCCCCCCCCCHHHHH
T ss_conf             87---313476636889983

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=253.96  Aligned_cols=173  Identities=23%  Similarity=0.307  Sum_probs=149.0

Q ss_pred             CCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCC-HHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEEEEE
Q ss_conf             5977444471028738999993-89969999993354588-566999999999981389987200017999599699998
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASS-QQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV~  586 (689)
                      ++|++.+.||+|+||+||+|+. .+++.||||.+...... ......+.+|+.++++++|||||++++++.+.+..++||
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivm   87 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL   87 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEEE
T ss_pred             CCCEEEEEEEECCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEEEEE
T ss_conf             87789889850879099999998999799999986577557778999999999998768888617999999899889999


Q ss_pred             ECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCCCCC
Q ss_conf             13688998899831954578999999999999999999999949999819804468985866999499986147765569
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~~~~  666 (689)
                      ||+++|+|.+++..    ...+++.....++.|++.||.|||+.   +|+||||||+|||+++++.+||+|||+|+.+..
T Consensus        88 Ey~~gg~L~~~~~~----~~~l~e~~~~~~~~qi~~al~ylH~~---~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~  160 (288)
T d1uu3a_          88 SYAKNGELLKYIRK----IGSFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSP  160 (288)
T ss_dssp             CCCTTEEHHHHHHH----HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECC-
T ss_pred             ECCCCCCHHHHHHC----CCCCCHHHHHHHHHHHHHHHHHHCCC---CEECCCCCCCCCCCCCCCEEEECCCCCCEECCC
T ss_conf             70489877776531----59999999999999999999762165---088476774123668885388603210242256


Q ss_pred             CCCC---EEECCCCEEEECCCCCCC
Q ss_conf             9842---011562349921102337
Q 005587          667 GSVS---QVSHNLTIMRAGGVTHRN  688 (689)
Q Consensus       667 ~~~~---~~~~~~~~~~ape~~~~~  688 (689)
                      ....   ....++..|+|||++.+.
T Consensus       161 ~~~~~~~~~~~GT~~Y~APE~~~~~  185 (288)
T d1uu3a_         161 ESKQARANSFVGTAQYVSPELLTEK  185 (288)
T ss_dssp             ---------CCCCGGGCCHHHHHTC
T ss_pred             CCCCCCCCCCCCCCCCCCCEEECCC
T ss_conf             7764333555677552584400268

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-45  Score=249.35  Aligned_cols=175  Identities=22%  Similarity=0.325  Sum_probs=153.2

Q ss_pred             HCCCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCCH----HHHHHHHHHHHHHHCCCCCCCCEECEEEEECCE
Q ss_conf             315977444471028738999993-899699999933545885----669999999999813899872000179995996
Q 005587          507 YTNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQ----QKDDEFLELVNNIDRIRHANIVELKGYCAEHGQ  581 (689)
Q Consensus       507 ~~~~f~~~~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~~----~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~  581 (689)
                      ..+.|+..+.||+|+||+||+|+. .+|+.||||.+.+.....    ...+.+.+|+.++++++|||||++++++.+.+.
T Consensus         8 i~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~   87 (293)
T d1jksa_           8 VDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTD   87 (293)
T ss_dssp             GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred             CCCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCE
T ss_conf             55677982798117895999999999998999999875663213406899999999999986799899938899997998


Q ss_pred             EEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCC----CEEEEE
Q ss_conf             9999813688998899831954578999999999999999999999949999819804468985866999----499986
Q 005587          582 RLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDL----AVSVSD  657 (689)
Q Consensus       582 ~~lV~Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~----~~ki~D  657 (689)
                      .++|||||++|+|.+++..    ...+++.....++.|++.||.|||+.   +|+||||||+|||++.++    .+|++|
T Consensus        88 ~~iv~E~~~gg~L~~~i~~----~~~l~~~~~~~~~~qi~~al~yLH~~---~ivHrDiKp~Nill~~~~~~~~~vkl~D  160 (293)
T d1jksa_          88 VILILELVAGGELFDFLAE----KESLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPRIKIID  160 (293)
T ss_dssp             EEEEEECCCSCBHHHHHHH----HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCSSSSSCCEEECC
T ss_pred             EEEEEECCCCCCCCCHHCC----CCCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCCCCCEEEEECCCCCCCCEEECC
T ss_conf             9999986778643100103----56421557899999999998766625---4221133301279825898666469643


Q ss_pred             ECCCCCCCCCCCCEEECCCCEEEECCCCCCC
Q ss_conf             1477655699842011562349921102337
Q 005587          658 CGLAPLISSGSVSQVSHNLTIMRAGGVTHRN  688 (689)
Q Consensus       658 FGla~~~~~~~~~~~~~~~~~~~ape~~~~~  688 (689)
                      ||+|+.+..+.......++..|+|||++.++
T Consensus       161 fG~a~~~~~~~~~~~~~~t~~y~APE~~~~~  191 (293)
T d1jksa_         161 FGLAHKIDFGNEFKNIFGTPEFVAPEIVNYE  191 (293)
T ss_dssp             CTTCEECTTSCBCSCCCCCGGGCCHHHHTTC
T ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCHHHHCCC
T ss_conf             3442105777631224777743099998189

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.6e-45  Score=248.82  Aligned_cols=171  Identities=27%  Similarity=0.263  Sum_probs=144.6

Q ss_pred             CCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCCH-HHHHHH---HHHHHHHHCCCCCCCCEECEEEEECCEEE
Q ss_conf             5977444471028738999993-899699999933545885-669999---99999981389987200017999599699
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQ-QKDDEF---LELVNNIDRIRHANIVELKGYCAEHGQRL  583 (689)
Q Consensus       509 ~~f~~~~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~~-~~~~~~---~~e~~~l~~l~Hpniv~l~~~~~~~~~~~  583 (689)
                      ++|++.++||+|+||.||+|+. .+|+.||||.+....... .....+   ..++..++.++|||||++++++.+.+..+
T Consensus         4 ddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~~   83 (364)
T d1omwa3           4 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS   83 (364)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred             HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEE
T ss_conf             76851018842889099999999999799999984587542667999999999999985089985889999999899889


Q ss_pred             EEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCC
Q ss_conf             99813688998899831954578999999999999999999999949999819804468985866999499986147765
Q 005587          584 LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPL  663 (689)
Q Consensus       584 lV~Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~  663 (689)
                      +||||+++|+|.+++..    ...+++..+..|+.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+|+.
T Consensus        84 ivmE~~~gg~L~~~l~~----~~~~~e~~~~~~~~qi~~aL~ylH~~---~iiHrDlKP~NILl~~~g~iKl~DFGla~~  156 (364)
T d1omwa3          84 FILDLMNGGDLHYHLSQ----HGVFSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACD  156 (364)
T ss_dssp             EEECCCCSCBHHHHHHH----HCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSSSCEEECCCTTCEE
T ss_pred             EEEEECCCCCHHHHHHH----CCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCEEECCCEEEECCCCCEEEEEECEEEE
T ss_conf             99991489838999873----25532789999999999999999977---962204442216785889679822010233


Q ss_pred             CCCCCCCEEECCCCEEEECCCCCC
Q ss_conf             569984201156234992110233
Q 005587          664 ISSGSVSQVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       664 ~~~~~~~~~~~~~~~~~ape~~~~  687 (689)
                      +...... ...++..|+|||++..
T Consensus       157 ~~~~~~~-~~~GT~~y~APE~~~~  179 (364)
T d1omwa3         157 FSKKKPH-ASVGTHGYMAPEVLQK  179 (364)
T ss_dssp             CSSSCCC-SCCSCGGGCCHHHHST
T ss_pred             CCCCCCC-CCCCCCCCCHHHHHHC
T ss_conf             3788643-3113455421687603

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-45  Score=252.30  Aligned_cols=170  Identities=22%  Similarity=0.336  Sum_probs=146.8

Q ss_pred             CCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEEEEEE
Q ss_conf             5977444471028738999993-899699999933545885669999999999813899872000179995996999981
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV~E  587 (689)
                      +.|++.+.||+|+||.||+|+. .+++.||||++....  ....+.+.+|+.++++++|||||++++++.+.+..++|||
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~--~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmE   89 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKS--EEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIE   89 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSS--SGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCEEEEEEEEECCCCEEEEEEECCCCEEEEEEEECCCC--HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEEE
T ss_conf             37598479930778199999999999399999987289--9999999999999986799998849889800995899996


Q ss_pred             CCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCCCCCC
Q ss_conf             36889988998319545789999999999999999999999499998198044689858669994999861477655699
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~~~~~  667 (689)
                      ||++|+|.+++...   ...+++..+..|+.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+|+.+...
T Consensus        90 y~~~g~L~~~~~~~---~~~l~e~~~~~i~~qi~~gL~ylH~~---~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~  163 (288)
T d2jfla1          90 FCAGGAVDAVMLEL---ERPLTESQIQVVCKQTLDALNYLHDN---KIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRT  163 (288)
T ss_dssp             CCTTEEHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECHHH
T ss_pred             CCCCCCHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHC---CEEEEECCHHHEEECCCCCEEEEECHHHHCCCCC
T ss_conf             27998188999862---89999999999999999999999988---9887140700314878999899716123035778


Q ss_pred             C-CCEEECCCCEEEECCCCC
Q ss_conf             8-420115623499211023
Q 005587          668 S-VSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       668 ~-~~~~~~~~~~~~ape~~~  686 (689)
                      . ......++..|+|||++.
T Consensus       164 ~~~~~~~~Gt~~y~APE~l~  183 (288)
T d2jfla1         164 IQRRDSFIGTPYWMAPEVVM  183 (288)
T ss_dssp             HHHHTCCCSCCTTCCHHHHT
T ss_pred             CCCCCCCCCCCCCCCHHHHH
T ss_conf             64100102562647999983

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.6e-45  Score=248.89  Aligned_cols=171  Identities=23%  Similarity=0.305  Sum_probs=148.5

Q ss_pred             CCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCC-HHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEEEEE
Q ss_conf             5977444471028738999993-89969999993354588-566999999999981389987200017999599699998
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASS-QQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV~  586 (689)
                      ++|++.+.||+|+||+||+|+. .+|+.||||++...... ....+.+.+|+.++++++|||||++++++.+.+..++||
T Consensus         4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivm   83 (316)
T d1fota_           4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM   83 (316)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             HHEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHEEEEEEECCEEEEEE
T ss_conf             47088889720768089999998999799999984577548899999999999998636967533035685288005676


Q ss_pred             ECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCCCCC
Q ss_conf             13688998899831954578999999999999999999999949999819804468985866999499986147765569
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~~~~  666 (689)
                      ||++||+|..++...    ..+++.....++.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+|+.+..
T Consensus        84 E~~~gg~l~~~~~~~----~~~~~~~~~~~~~qi~~al~~lH~~---~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~  156 (316)
T d1fota_          84 DYIEGGELFSLLRKS----QRFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDFGFAKYVPD  156 (316)
T ss_dssp             CCCCSCBHHHHHHHT----SSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEEECCCSSCEECSS
T ss_pred             EECCCCCCCCCCCCC----CCCCCCHHHHHHHHHHHHHHHHCCC---CEECCCCCCHHEEECCCCCEEEECCCCCEEECC
T ss_conf             503786322343222----2111007999999998765541247---677055681050386899889831752167124


Q ss_pred             CCCCEEECCCCEEEECCCCCCC
Q ss_conf             9842011562349921102337
Q 005587          667 GSVSQVSHNLTIMRAGGVTHRN  688 (689)
Q Consensus       667 ~~~~~~~~~~~~~~ape~~~~~  688 (689)
                      ..  ....++..|+|||++.++
T Consensus       157 ~~--~~~~Gt~~Y~APE~l~~~  176 (316)
T d1fota_         157 VT--YTLCGTPDYIAPEVVSTK  176 (316)
T ss_dssp             CB--CCCCSCTTTCCHHHHTTC
T ss_pred             CC--CCCCCCCCCCCHHHHCCC
T ss_conf             56--434576343599998389

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-45  Score=249.12  Aligned_cols=176  Identities=28%  Similarity=0.416  Sum_probs=146.1

Q ss_pred             CCCCCCCCEEEECCCEEEEEEEECC-C-----CEEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCCCCCEECEEEEECC
Q ss_conf             1597744447102873899999389-9-----6999999335458856699999999998138-9987200017999599
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQLPD-G-----KLLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHANIVELKGYCAEHG  580 (689)
Q Consensus       508 ~~~f~~~~~lG~G~~g~Vy~~~~~~-g-----~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l-~Hpniv~l~~~~~~~~  580 (689)
                      .++|+..+.||+|+||+||+|+... +     ..||||.+..... ......+.+|+..+.++ +|||||++++++.+.+
T Consensus        36 ~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~  114 (325)
T d1rjba_          36 RENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKAD-SSEREALMSELKMMTQLGSHENIVNLLGACTLSG  114 (325)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC-------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             HHHEEEEEEEEECCCEEEEEEEECCCCCCCCEEEEEEEEECCCCC-HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECC
T ss_conf             899397019830788199999985788554204999999663358-7899999999999997158996868778886299


Q ss_pred             EEEEEEECCCCCCHHHHHHCCCC-------------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCC
Q ss_conf             69999813688998899831954-------------------57899999999999999999999994999981980446
Q 005587          581 QRLLIYEYCSNGTLQDMLHSDDE-------------------LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFK  641 (689)
Q Consensus       581 ~~~lV~Ey~~~GsL~~~l~~~~~-------------------~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlk  641 (689)
                      ..++|||||++|+|.++++....                   ....++|..++.|+.|++.||.|||+.   +|+|||||
T Consensus       115 ~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~---~IiHRDlK  191 (325)
T d1rjba_         115 PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---SCVHRDLA  191 (325)
T ss_dssp             SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---TEEETTCS
T ss_pred             EEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCCC
T ss_conf             589999727999599999862577751022100001222001257789999999999999999999739---90505270


Q ss_pred             CCCEEECCCCCEEEEEECCCCCCCCCCCCEE---ECCCCEEEECCCCCC
Q ss_conf             8985866999499986147765569984201---156234992110233
Q 005587          642 SANILLDDDLAVSVSDCGLAPLISSGSVSQV---SHNLTIMRAGGVTHR  687 (689)
Q Consensus       642 p~NILld~~~~~ki~DFGla~~~~~~~~~~~---~~~~~~~~ape~~~~  687 (689)
                      |+|||++.++.+||+|||+|+..........   ..++..|+|||++.+
T Consensus       192 p~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~  240 (325)
T d1rjba_         192 ARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFE  240 (325)
T ss_dssp             GGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHH
T ss_pred             HHCCCCCCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCHHHHCC
T ss_conf             3214434598289851422220457786156234357876578388727

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-45  Score=247.87  Aligned_cols=170  Identities=24%  Similarity=0.368  Sum_probs=149.0

Q ss_pred             CCCCCCCEEEECCCEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEEEEEEC
Q ss_conf             59774444710287389999938996999999335458856699999999998138998720001799959969999813
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       509 ~~f~~~~~lG~G~~g~Vy~~~~~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV~Ey  588 (689)
                      ++|+..+.||+|+||+||+|+.++++.||||.++....   ..++|.+|+..+++++|||||+++|+|.+.+..++||||
T Consensus         4 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~---~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey   80 (258)
T d1k2pa_           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM---SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEY   80 (258)
T ss_dssp             CCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSSS---CHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEEC
T ss_pred             HHCEEEEEEECCCCEEEEEEEECCCCEEEEEEECCCCC---CHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEEC
T ss_conf             99799689820788399999988998999999874757---789999999999966898601588998507816999970


Q ss_pred             CCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCCCCCCC
Q ss_conf             68899889983195457899999999999999999999994999981980446898586699949998614776556998
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~~~~~~  668 (689)
                      +++|+|..++...   ...+++..+++|+.|+++||.|||+.   +|+||||||+|||++.++.+||+|||+++.+....
T Consensus        81 ~~~g~l~~~~~~~---~~~~~~~~~~~i~~qi~~gl~~LH~~---~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~  154 (258)
T d1k2pa_          81 MANGCLLNYLREM---RHRFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE  154 (258)
T ss_dssp             CTTEEHHHHHHSG---GGCCCHHHHHHHHHHHHHHHHHHHHT---TBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSS
T ss_pred             CCCCCHHHHHHCC---CCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCEEEEECCCCCEEECCCHHHEECCCCC
T ss_conf             4899388864102---46776899999999999999987546---84346654135887699847988614420235787


Q ss_pred             CCE--EECCCCEEEECCCCCC
Q ss_conf             420--1156234992110233
Q 005587          669 VSQ--VSHNLTIMRAGGVTHR  687 (689)
Q Consensus       669 ~~~--~~~~~~~~~ape~~~~  687 (689)
                      ...  ...++..|+|||++.+
T Consensus       155 ~~~~~~~~~t~~y~aPE~~~~  175 (258)
T d1k2pa_         155 YTSSVGSKFPVRWSPPEVLMY  175 (258)
T ss_dssp             CCCCCCSCCCGGGCCHHHHHH
T ss_pred             CEEECCCCCCCCCCCCHHHCC
T ss_conf             225246578877578078637

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-44  Score=246.89  Aligned_cols=173  Identities=25%  Similarity=0.423  Sum_probs=145.9

Q ss_pred             CCCCCCCEEEECCCEEEEEEEECCC-----CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEE
Q ss_conf             5977444471028738999993899-----69999993354588566999999999981389987200017999599699
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPDG-----KLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRL  583 (689)
Q Consensus       509 ~~f~~~~~lG~G~~g~Vy~~~~~~g-----~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~  583 (689)
                      +.|+..++||+|+||.||+|.++++     ..||||++..... .....+|.+|+.++.+++|||||+++|++.+.+..+
T Consensus         7 ~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~-~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~~   85 (283)
T d1mqba_           7 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYT-EKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMM   85 (283)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCC-HHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE
T ss_pred             HHEEEEEEEEECCCEEEEEEEEECCCCEEEEEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEE
T ss_conf             9968615981177909999999689987879999999884459-689999999999998568987832367783388038


Q ss_pred             EEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCC
Q ss_conf             99813688998899831954578999999999999999999999949999819804468985866999499986147765
Q 005587          584 LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPL  663 (689)
Q Consensus       584 lV~Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~  663 (689)
                      +||||+.+|++.+++...   ...++|..++.|+.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+|+.
T Consensus        86 ~v~e~~~~~~l~~~~~~~---~~~~~~~~~~~i~~~i~~gl~~lH~~---~iiHrDlKp~NILl~~~~~~Kl~DFGla~~  159 (283)
T d1mqba_          86 IITEYMENGALDKFLREK---DGEFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSDFGLSRV  159 (283)
T ss_dssp             EEEECCTTEEHHHHHHHT---TTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC---
T ss_pred             EEEEECCCCCCHHHHHCC---CCCCCHHHHHHHHHHHHHHHHHCCCC---CCCCCCCCCCEEEECCCCEEEECCCCHHHC
T ss_conf             999721357402221023---45420899999999999854121212---342576564427888998499845510300


Q ss_pred             CCCCCCC----EEECCCCEEEECCCCCCC
Q ss_conf             5699842----011562349921102337
Q 005587          664 ISSGSVS----QVSHNLTIMRAGGVTHRN  688 (689)
Q Consensus       664 ~~~~~~~----~~~~~~~~~~ape~~~~~  688 (689)
                      +......    ....++..|+|||++.++
T Consensus       160 ~~~~~~~~~~~~~~~gt~~Y~APE~l~~~  188 (283)
T d1mqba_         160 LEDDPEATYTTSGGKIPIRWTAPEAISYR  188 (283)
T ss_dssp             --------------CCCGGGSCHHHHHSC
T ss_pred             CCCCCCCCEEECCCCCCCCCCCHHHHCCC
T ss_conf             35787652674267777343488887049

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-44  Score=245.72  Aligned_cols=165  Identities=23%  Similarity=0.331  Sum_probs=139.9

Q ss_pred             CEEEECCCEEEEEEEEC---CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEEEEEECCCC
Q ss_conf             44710287389999938---996999999335458856699999999998138998720001799959969999813688
Q 005587          515 NLIGAGMLGSVYRAQLP---DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYCSN  591 (689)
Q Consensus       515 ~~lG~G~~g~Vy~~~~~---~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV~Ey~~~  591 (689)
                      +.||+|+||+||+|.+.   .++.||||++..........++|.+|+.++++++|||||+++|+|... ..++||||+++
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~~-~~~lvmE~~~~   91 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAE-SWMLVMEMAEL   91 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESS-SEEEEEECCTT
T ss_pred             CCCCCCCCEEEEEEEECCCCCCEEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC-CEEEEEECCCC
T ss_conf             78345878299999981697385999999880108989999999999999867998985277775059-77999974788


Q ss_pred             CCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCCCCCCCCCE
Q ss_conf             99889983195457899999999999999999999994999981980446898586699949998614776556998420
Q 005587          592 GTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVSQ  671 (689)
Q Consensus       592 GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~~~~~~~~~  671 (689)
                      |+|.++++.    ...++|..++.|+.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+|+.+.......
T Consensus        92 g~L~~~l~~----~~~l~~~~~~~i~~qi~~gl~ylH~~---~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~~  164 (277)
T d1xbba_          92 GPLNKYLQQ----NRHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYY  164 (277)
T ss_dssp             EEHHHHHHH----CTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEE
T ss_pred             CCHHHHHHH----CCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCHHHCCCCCCCCCCCCHHHHHHCCCCCCCC
T ss_conf             968999752----25789999999999999997668747---95567776113102356751234134533134323443


Q ss_pred             ----EECCCCEEEECCCCCC
Q ss_conf             ----1156234992110233
Q 005587          672 ----VSHNLTIMRAGGVTHR  687 (689)
Q Consensus       672 ----~~~~~~~~~ape~~~~  687 (689)
                          ...++..|+|||++.+
T Consensus       165 ~~~~~~~gt~~y~APE~l~~  184 (277)
T d1xbba_         165 KAQTHGKWPVKWYAPECINY  184 (277)
T ss_dssp             EC----CCCGGGCCHHHHHH
T ss_pred             CCCCCCCCCCEECCCHHHCC
T ss_conf             22445677842039166537

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-44  Score=243.36  Aligned_cols=173  Identities=17%  Similarity=0.234  Sum_probs=151.7

Q ss_pred             HCCCCCCCCEEEECCCEEEEEEEEC-CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEEEE
Q ss_conf             3159774444710287389999938-996999999335458856699999999998138998720001799959969999
Q 005587          507 YTNSFSQENLIGAGMLGSVYRAQLP-DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLI  585 (689)
Q Consensus       507 ~~~~f~~~~~lG~G~~g~Vy~~~~~-~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV  585 (689)
                      ..++|.+.+.||+|+||+||+|... +++.||||.+...   ..+...+.+|+.++.+++|||||++++++.+.+..|+|
T Consensus         3 ~~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~---~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lv   79 (321)
T d1tkia_           3 LYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK---GTDQVLVKKEISILNIARHRNILHLHESFESMEELVMI   79 (321)
T ss_dssp             CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC---THHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEE
T ss_pred             CCCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEECCC---CCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEE
T ss_conf             701058878983177839999999899969999997578---66599999999999857997989098999889988999


Q ss_pred             EECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECC--CCCEEEEEECCCCC
Q ss_conf             8136889988998319545789999999999999999999999499998198044689858669--99499986147765
Q 005587          586 YEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDD--DLAVSVSDCGLAPL  663 (689)
Q Consensus       586 ~Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~--~~~~ki~DFGla~~  663 (689)
                      ||||+||+|.+++...   ...+++.....|+.|++.||.|||+.   +|+||||||+|||++.  ...+||+|||+++.
T Consensus        80 mE~~~gg~L~~~i~~~---~~~l~e~~~~~i~~qi~~al~yLH~~---~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~  153 (321)
T d1tkia_          80 FEFISGLDIFERINTS---AFELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQ  153 (321)
T ss_dssp             ECCCCCCBHHHHHTSS---SCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCTTCEE
T ss_pred             EECCCCCCHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCEEECCCCCEEEEECCCCHHHC
T ss_conf             9538998088998753---89999999999999999999999876---99751355444344378851899764411100


Q ss_pred             CCCCCCCEEECCCCEEEECCCCCCC
Q ss_conf             5699842011562349921102337
Q 005587          664 ISSGSVSQVSHNLTIMRAGGVTHRN  688 (689)
Q Consensus       664 ~~~~~~~~~~~~~~~~~ape~~~~~  688 (689)
                      ...........++..|+|||++.++
T Consensus       154 ~~~~~~~~~~~~t~~y~ape~~~~~  178 (321)
T d1tkia_         154 LKPGDNFRLLFTAPEYYAPEVHQHD  178 (321)
T ss_dssp             CCTTCEEEEEESCGGGSCHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCCCCHHCCCC
T ss_conf             3467753212233222340210487

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-44  Score=246.62  Aligned_cols=171  Identities=20%  Similarity=0.288  Sum_probs=148.4

Q ss_pred             CCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCC-HHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEEEEE
Q ss_conf             5977444471028738999993-89969999993354588-566999999999981389987200017999599699998
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASS-QQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV~  586 (689)
                      ++|++.+.||+|+||.||+|+. .+|+.||||++...... ......+.+|+.+++.++|||||++++++......++||
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v~  120 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM  120 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             CCEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCC
T ss_conf             37089889611768089999998999899999982677458899999999999999748772740344443222223222


Q ss_pred             ECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCCCCC
Q ss_conf             13688998899831954578999999999999999999999949999819804468985866999499986147765569
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS  666 (689)
Q Consensus       587 Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~~~~  666 (689)
                      ||+.+|+|.+++..    ...+++.....|+.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+|+.+..
T Consensus       121 e~~~~g~l~~~l~~----~~~l~e~~~~~i~~qi~~aL~yLH~~---~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~  193 (350)
T d1rdqe_         121 EYVAGGEMFSHLRR----IGRFSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG  193 (350)
T ss_dssp             ECCTTCBHHHHHHH----HCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECSS
T ss_pred             CCCCCCCHHHHHHH----CCCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHCCCCCCCCEEEEECEEEEECCC
T ss_conf             23346622666751----58989999999999999989999859---986176799993607789788610103332256


Q ss_pred             CCCCEEECCCCEEEECCCCCCC
Q ss_conf             9842011562349921102337
Q 005587          667 GSVSQVSHNLTIMRAGGVTHRN  688 (689)
Q Consensus       667 ~~~~~~~~~~~~~~ape~~~~~  688 (689)
                      ..  ....++..|+|||++.+.
T Consensus       194 ~~--~~~~Gt~~Y~APE~~~~~  213 (350)
T d1rdqe_         194 RT--WTLCGTPEALAPEIILSK  213 (350)
T ss_dssp             CB--CCCEECGGGCCHHHHTTC
T ss_pred             CC--CCCCCCCCCCCHHHHCCC
T ss_conf             66--433676356788997179

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-44  Score=244.45  Aligned_cols=171  Identities=19%  Similarity=0.323  Sum_probs=141.8

Q ss_pred             CCCCCCCE-EEECCCEEEEEEEEC---CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEEE
Q ss_conf             59774444-710287389999938---99699999933545885669999999999813899872000179995996999
Q 005587          509 NSFSQENL-IGAGMLGSVYRAQLP---DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLL  584 (689)
Q Consensus       509 ~~f~~~~~-lG~G~~g~Vy~~~~~---~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~l  584 (689)
                      ++|...+. ||+|+||.||+|.++   ++..||||.+.... .....++|.+|+.++++++|||||+++|+|.. +..++
T Consensus         8 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~-~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~-~~~~l   85 (285)
T d1u59a_           8 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT-EKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALML   85 (285)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSC-CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEE
T ss_pred             CCEEECCCEEECCCCEEEEEEEEECCCCCEEEEEEEECHHC-CHHHHHHHHHHHHHHHHCCCCCEEEEEEEECC-CEEEE
T ss_conf             47188784873060809999999608976899999988203-97899999999999986799888068656036-80799


Q ss_pred             EEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCCC
Q ss_conf             98136889988998319545789999999999999999999999499998198044689858669994999861477655
Q 005587          585 IYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI  664 (689)
Q Consensus       585 V~Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~~  664 (689)
                      ||||+++|+|.+++...   ...+++..+..|+.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+|+.+
T Consensus        86 vmE~~~~g~L~~~l~~~---~~~l~~~~~~~i~~qi~~gL~ylH~~---~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~  159 (285)
T d1u59a_          86 VMEMAGGGPLHKFLVGK---REEIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDFGLSKAL  159 (285)
T ss_dssp             EEECCTTEEHHHHHTTC---TTTSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEEECCCTTCEEC
T ss_pred             EEEECCCCCHHHHHHCC---CCCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEECCCCCEEECCCHHHHCC
T ss_conf             99807899689975212---56999999999999999987899868---8105767646604546885420331342115


Q ss_pred             CCCCCCE----EECCCCEEEECCCCCC
Q ss_conf             6998420----1156234992110233
Q 005587          665 SSGSVSQ----VSHNLTIMRAGGVTHR  687 (689)
Q Consensus       665 ~~~~~~~----~~~~~~~~~ape~~~~  687 (689)
                      .......    ...++..|+|||++..
T Consensus       160 ~~~~~~~~~~~~~~gt~~y~aPE~~~~  186 (285)
T d1u59a_         160 GADDSYYTARSAGKWPLKWYAPECINF  186 (285)
T ss_dssp             TTCSCEECCCCSSCCCGGGCCHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHC
T ss_conf             543432113562113743358688727

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=9.2e-44  Score=242.48  Aligned_cols=172  Identities=25%  Similarity=0.389  Sum_probs=151.9

Q ss_pred             CCCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCCH-------HHHHHHHHHHHHHHCCC-CCCCCEECEEEEE
Q ss_conf             15977444471028738999993-899699999933545885-------66999999999981389-9872000179995
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQ-------QKDDEFLELVNNIDRIR-HANIVELKGYCAE  578 (689)
Q Consensus       508 ~~~f~~~~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~~-------~~~~~~~~e~~~l~~l~-Hpniv~l~~~~~~  578 (689)
                      .++|+..+.||+|+||+||+|+. .+|+.||||++.......       .....+.+|+..+++++ |||||++++++.+
T Consensus         2 ~~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~   81 (277)
T d1phka_           2 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET   81 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred             CCCCEECEEEECCCCEEEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf             66388852884176849999999999989999999624464114788899999999999999985079974799762146


Q ss_pred             CCEEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEE
Q ss_conf             99699998136889988998319545789999999999999999999999499998198044689858669994999861
Q 005587          579 HGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDC  658 (689)
Q Consensus       579 ~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DF  658 (689)
                      .+..|+|||||++|+|.+++..    ...+++.....++.|++.||.|||+.   +|+||||||+|||++.++.+||+||
T Consensus        82 ~~~~~ivmE~~~~g~L~~~l~~----~~~l~e~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~Nill~~~~~~kl~DF  154 (277)
T d1phka_          82 NTFFFLVFDLMKKGELFDYLTE----KVTLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENILLDDDMNIKLTDF  154 (277)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHH----HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCC
T ss_pred             CCCEEEEEECCCCCHHHHHHHH----CCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCEEEECCCCCEEECCC
T ss_conf             7605999976898668999986----59999999999999999999999875---9943234625489868998387124


Q ss_pred             CCCCCCCCCCCCEEECCCCEEEECCCCC
Q ss_conf             4776556998420115623499211023
Q 005587          659 GLAPLISSGSVSQVSHNLTIMRAGGVTH  686 (689)
Q Consensus       659 Gla~~~~~~~~~~~~~~~~~~~ape~~~  686 (689)
                      |+++.+..+.......++..|+|||++.
T Consensus       155 G~a~~~~~~~~~~~~~gt~~y~~PE~~~  182 (277)
T d1phka_         155 GFSCQLDPGEKLREVCGTPSYLAPEIIE  182 (277)
T ss_dssp             TTCEECCTTCCBCCCCSCGGGCCHHHHH
T ss_pred             HHEEECCCCCCEEEEECCCCCCCHHHHH
T ss_conf             0316726887213452467888988860

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-45  Score=248.21  Aligned_cols=170  Identities=26%  Similarity=0.417  Sum_probs=146.2

Q ss_pred             CCCCCCCEEEECCCEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEEEEEEC
Q ss_conf             59774444710287389999938996999999335458856699999999998138998720001799959969999813
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       509 ~~f~~~~~lG~G~~g~Vy~~~~~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV~Ey  588 (689)
                      ++|++.+.||+|+||.||+|+..+++.||||++....   ...+.|.+|+..+++++|+|||+++|+|.+ +..++||||
T Consensus        17 ~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~---~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~-~~~~lv~Ey   92 (285)
T d1fmka3          17 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT---MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEY   92 (285)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS---SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECC
T ss_pred             HHEEEEEEEEECCCEEEEEEEECCCCEEEEEEECCCC---CCHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CCEEEEEEE
T ss_conf             9979846993079809999999999999999988044---888999999999986666788689999823-975999994


Q ss_pred             CCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCCCCCCC
Q ss_conf             68899889983195457899999999999999999999994999981980446898586699949998614776556998
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~~~~~~  668 (689)
                      +++|+|..++....  ...++|..++.|+.||+.||.|||+.   +|+||||||+|||+|.++.+||+|||+|+.+....
T Consensus        93 ~~~g~l~~~~~~~~--~~~l~~~~~~~i~~~i~~gl~~LH~~---~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~  167 (285)
T d1fmka3          93 MSKGSLLDFLKGET--GKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE  167 (285)
T ss_dssp             CTTCBHHHHHSHHH--HTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCTTC------
T ss_pred             CCCCCHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHHH---HEECCCCCCEEEEECCCCCEEECCCCHHHHCCCCC
T ss_conf             47994354200003--55305999999999999999987541---14335312307999899929984425554256887


Q ss_pred             CC--EEECCCCEEEECCCCCC
Q ss_conf             42--01156234992110233
Q 005587          669 VS--QVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       669 ~~--~~~~~~~~~~ape~~~~  687 (689)
                      ..  ....++..|+|||++.+
T Consensus       168 ~~~~~~~~gt~~y~aPE~~~~  188 (285)
T d1fmka3         168 YTARQGAKFPIKWTAPEAALY  188 (285)
T ss_dssp             --------CCGGGSCHHHHHH
T ss_pred             CEEECCCCCCCCCCCHHHHHC
T ss_conf             335245455665458089837

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-44  Score=242.85  Aligned_cols=175  Identities=25%  Similarity=0.418  Sum_probs=149.7

Q ss_pred             CCCCCCCEEEECCCEEEEEEEEC-CCC--EEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCCCCCEECEEEEECCEEEE
Q ss_conf             59774444710287389999938-996--999999335458856699999999998138-99872000179995996999
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGK--LLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHANIVELKGYCAEHGQRLL  584 (689)
Q Consensus       509 ~~f~~~~~lG~G~~g~Vy~~~~~-~g~--~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l-~Hpniv~l~~~~~~~~~~~l  584 (689)
                      ++|+..++||+|+||.||+|++. ++.  .||||++..... ....++|.+|++.+.++ +|||||+++|+|.+.+..++
T Consensus        10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~i   88 (309)
T d1fvra_          10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYAS-KDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYL   88 (309)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC-------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEE
T ss_pred             HHCEEEEEEEECCCCEEEEEEECCCCEEEEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEE
T ss_conf             99688779820788289999998999699999999782338-57999999999999862289988367888841873699


Q ss_pred             EEECCCCCCHHHHHHCCC------------CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCC
Q ss_conf             981368899889983195------------45789999999999999999999999499998198044689858669994
Q 005587          585 IYEYCSNGTLQDMLHSDD------------ELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLA  652 (689)
Q Consensus       585 V~Ey~~~GsL~~~l~~~~------------~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~  652 (689)
                      ||||+++|+|.++++...            .....++|..+++++.|+|.||.|+|+.   +|+||||||+|||++.++.
T Consensus        89 V~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~---~iiHrDlkp~NIL~~~~~~  165 (309)
T d1fvra_          89 AIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYV  165 (309)
T ss_dssp             EECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGC
T ss_pred             EEEECCCCCHHHHHHHCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCEEEECCCCC
T ss_conf             9980289869999864035555512310123457899999999999999998766308---9545550520489868876


Q ss_pred             EEEEEECCCCCCCCCCCCEEECCCCEEEECCCCCC
Q ss_conf             99986147765569984201156234992110233
Q 005587          653 VSVSDCGLAPLISSGSVSQVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       653 ~ki~DFGla~~~~~~~~~~~~~~~~~~~ape~~~~  687 (689)
                      +||+|||+|+............++..|+|||++.+
T Consensus       166 ~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~~  200 (309)
T d1fvra_         166 AKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNY  200 (309)
T ss_dssp             EEECCTTCEESSCEECCC----CCTTTCCHHHHHH
T ss_pred             EEECCCCCCCCCCCCCCCCCEECCCCCCCHHHHCC
T ss_conf             38743443224442234553013775555387526

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.7e-44  Score=243.22  Aligned_cols=183  Identities=27%  Similarity=0.360  Sum_probs=152.8

Q ss_pred             HHHHHHHCCCCCCCCEEEECCCEEEEEEEEC------CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECE
Q ss_conf             4448553159774444710287389999938------9969999993354588566999999999981389987200017
Q 005587          501 IASLQQYTNSFSQENLIGAGMLGSVYRAQLP------DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKG  574 (689)
Q Consensus       501 ~~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~~------~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~  574 (689)
                      +.+++...++|+..+.||+|+||.||+|+..      +++.||||++.... .....++|.+|+.++++++||||+++++
T Consensus         5 ~~~~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~-~~~~~~~~~~E~~il~~l~h~niv~~~~   83 (301)
T d1lufa_           5 LLSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA-SADMQADFQREAALMAEFDNPNIVKLLG   83 (301)
T ss_dssp             HHHTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTC-CHHHHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred             HHHCCCCHHHCEEEEEEEECCCEEEEEEEECCCCCCCCCEEEEEEEECHHC-CHHHHHHHHHHHHHHHHCCCCCCCCCEE
T ss_conf             331138988938867982078839999998887657788299999988210-8579999999999999668997655246


Q ss_pred             EEEECCEEEEEEECCCCCCHHHHHHCCCC--------------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             99959969999813688998899831954--------------------5789999999999999999999999499998
Q 005587          575 YCAEHGQRLLIYEYCSNGTLQDMLHSDDE--------------------LKNNLSWNTRIRMALGAARALEYLHEICQPP  634 (689)
Q Consensus       575 ~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~--------------------~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~  634 (689)
                      +|...+..++||||+++|+|.++++....                    ....++|..++.|+.|++.||.|||+.   +
T Consensus        84 ~~~~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~---~  160 (301)
T d1lufa_          84 VCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---K  160 (301)
T ss_dssp             EECSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT---T
T ss_pred             EECCCCCEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC---C
T ss_conf             6605980389998158992999998527554210000111001210346788989999999999999985541357---8


Q ss_pred             CEEECCCCCCEEECCCCCEEEEEECCCCCCCCCCCC---EEECCCCEEEECCCCCC
Q ss_conf             198044689858669994999861477655699842---01156234992110233
Q 005587          635 IVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSVS---QVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       635 IiHrDlkp~NILld~~~~~ki~DFGla~~~~~~~~~---~~~~~~~~~~ape~~~~  687 (689)
                      |+||||||+|||+|.++.+||+|||+|+.+.+....   ....++.+|+|||++.+
T Consensus       161 ivHrDlKp~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  216 (301)
T d1lufa_         161 FVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFY  216 (301)
T ss_dssp             CCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHH
T ss_pred             EEEEEECCCCEEECCCCCEEECCCHHHEECCCCCCCCCCCCCCCCCCCCCHHHHCC
T ss_conf             68548840116898999289833144211367764111577776767679899726

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-43  Score=238.98  Aligned_cols=170  Identities=26%  Similarity=0.350  Sum_probs=138.8

Q ss_pred             CCCCCCCEEEECCCEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECC----EEEE
Q ss_conf             597744447102873899999389969999993354588566999999999981389987200017999599----6999
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHG----QRLL  584 (689)
Q Consensus       509 ~~f~~~~~lG~G~~g~Vy~~~~~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~----~~~l  584 (689)
                      ++|...+.||+|+||.||+|++ +|+.||||++....   .....+..|+..+.+++|||||+++++|...+    ..++
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~~~-~g~~vAvK~~~~~~---~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~l   78 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWL   78 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEEECGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEE
T ss_pred             CEEEEEEEEEECCCEEEEEEEE-CCEEEEEEEECCCC---HHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEE
T ss_conf             6899988982078819999999-99899999987200---4679999999999627998683268899837986048999


Q ss_pred             EEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-----CCCCEEECCCCCCEEECCCCCEEEEEEC
Q ss_conf             98136889988998319545789999999999999999999999499-----9981980446898586699949998614
Q 005587          585 IYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEIC-----QPPIVHRNFKSANILLDDDLAVSVSDCG  659 (689)
Q Consensus       585 V~Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~-----~~~IiHrDlkp~NILld~~~~~ki~DFG  659 (689)
                      |||||++|+|.++++.     ..++|..+++++.++|.||.|+|+.+     .++|+||||||+|||++.++.+||+|||
T Consensus        79 v~Ey~~~g~L~~~l~~-----~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFG  153 (303)
T d1vjya_          79 VSDYHEHGSLFDYLNR-----YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLG  153 (303)
T ss_dssp             EEECCTTCBHHHHHHH-----CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCT
T ss_pred             EEECCCCCCHHHHHHC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCEEECCCCCEEEEECC
T ss_conf             9964669898999865-----89998999999999999999988766520468986615317313578688776887638


Q ss_pred             CCCCCCCCCCC-----EEECCCCEEEECCCCCC
Q ss_conf             77655699842-----01156234992110233
Q 005587          660 LAPLISSGSVS-----QVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       660 la~~~~~~~~~-----~~~~~~~~~~ape~~~~  687 (689)
                      +++.+......     ....++..|+|||++.+
T Consensus       154 l~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  186 (303)
T d1vjya_         154 LAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDD  186 (303)
T ss_dssp             TCEEEETTTTEECC----CCSCGGGCCHHHHTT
T ss_pred             CCCCCCCCCCCEECCCCCEECCCCCCCHHHCCC
T ss_conf             662346777620013552503547678221056

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-43  Score=238.80  Aligned_cols=169  Identities=19%  Similarity=0.246  Sum_probs=142.5

Q ss_pred             CCCCCCC-CEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHC-CCCCCCCEECEEEEE----CC
Q ss_conf             1597744-4471028738999993-899699999933545885669999999999813-899872000179995----99
Q 005587          508 TNSFSQE-NLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDR-IRHANIVELKGYCAE----HG  580 (689)
Q Consensus       508 ~~~f~~~-~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~-l~Hpniv~l~~~~~~----~~  580 (689)
                      .++|.+. ++||+|+||.||+|+. .+++.||||++...       ..+.+|+..+.+ .+|||||++++++.+    ..
T Consensus        10 ~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~-------~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~   82 (335)
T d2ozaa1          10 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-------PKARREVELHWRASQCPHIVRIVDVYENLYAGRK   82 (335)
T ss_dssp             GGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECS-------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEE
T ss_pred             CCCEEEEEEEEEECCCEEEEEEEECCCCCEEEEEEECCC-------HHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCC
T ss_conf             148798107965454869999998899989999998974-------7799999999986699997829899950346897


Q ss_pred             EEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECC---CCCEEEEE
Q ss_conf             699998136889988998319545789999999999999999999999499998198044689858669---99499986
Q 005587          581 QRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDD---DLAVSVSD  657 (689)
Q Consensus       581 ~~~lV~Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~---~~~~ki~D  657 (689)
                      ..|+|||||+||+|.+++....  ...+++.....|+.|++.||.|||+.   +|+||||||+|||++.   .+.+||+|
T Consensus        83 ~~~ivmEy~~gg~L~~~i~~~~--~~~l~e~~~~~i~~qi~~al~ylH~~---~iiHRDiKp~NIll~~~~~~~~~Kl~D  157 (335)
T d2ozaa1          83 CLLIVMECLDGGELFSRIQDRG--DQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTD  157 (335)
T ss_dssp             EEEEEEECCCSEEHHHHHHSCS--CCCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCSSTTCCEEECC
T ss_pred             EEEEEEECCCCCCHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             8999997789984999998627--87757999999999999999999976---986444100220113555566311354


Q ss_pred             ECCCCCCCCCCCCEEECCCCEEEECCCCCCC
Q ss_conf             1477655699842011562349921102337
Q 005587          658 CGLAPLISSGSVSQVSHNLTIMRAGGVTHRN  688 (689)
Q Consensus       658 FGla~~~~~~~~~~~~~~~~~~~ape~~~~~  688 (689)
                      ||+|+............++..|+|||++.+.
T Consensus       158 FG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~  188 (335)
T d2ozaa1         158 FGFAKETTSHNSLTTPCYTPYYVAPEVLGPE  188 (335)
T ss_dssp             CTTCEECCCCCCCCCCSCCCSSCCCCCCCGG
T ss_pred             CCEEEECCCCCCCCCCCCCCCCCCCHHHCCC
T ss_conf             5512333688864322677563792777489

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-43  Score=238.17  Aligned_cols=173  Identities=20%  Similarity=0.268  Sum_probs=145.1

Q ss_pred             CCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCC-HHHHHHHHHHHHHHH-CCCCCCCCEECEEEEECCEEEEE
Q ss_conf             5977444471028738999993-89969999993354588-566999999999981-38998720001799959969999
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASS-QQKDDEFLELVNNID-RIRHANIVELKGYCAEHGQRLLI  585 (689)
Q Consensus       509 ~~f~~~~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~-~~~~~~~~~e~~~l~-~l~Hpniv~l~~~~~~~~~~~lV  585 (689)
                      ++|...+.||+|+||+||+|+. .+++.||||++.+.... ......+..|...+. .++|||||++++++.+.+..|+|
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yiv   81 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFV   81 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEE
T ss_pred             CCEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEE
T ss_conf             97188658940878289999999999899999980555338489999999999999847999687898897049831677


Q ss_pred             EECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCCCC
Q ss_conf             81368899889983195457899999999999999999999994999981980446898586699949998614776556
Q 005587          586 YEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLIS  665 (689)
Q Consensus       586 ~Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~~~  665 (689)
                      |||+++|+|.+++..    ...+++.....++.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+|+...
T Consensus        82 mEy~~~g~L~~~i~~----~~~~~e~~~~~~~~qi~~al~ylH~~---~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~  154 (320)
T d1xjda_          82 MEYLNGGDLMYHIQS----CHKFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGMCKENM  154 (320)
T ss_dssp             EECCTTCBHHHHHHH----HSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCC
T ss_pred             EEECCCCCHHHHHHC----CCCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCCCCCCEEECCCCCEECCCCCHHHHCC
T ss_conf             750379808998640----47899999999999999999999868---93403476540444489963015553023235


Q ss_pred             CCC-CCEEECCCCEEEECCCCCCC
Q ss_conf             998-42011562349921102337
Q 005587          666 SGS-VSQVSHNLTIMRAGGVTHRN  688 (689)
Q Consensus       666 ~~~-~~~~~~~~~~~~ape~~~~~  688 (689)
                      ... ......++..|+|||++.++
T Consensus       155 ~~~~~~~~~~gt~~y~aPE~~~~~  178 (320)
T d1xjda_         155 LGDAKTNTFCGTPDYIAPEILLGQ  178 (320)
T ss_dssp             CTTCCBCCCCSCGGGCCHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCCHHHHCCC
T ss_conf             665334545787776899998279

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-43  Score=238.69  Aligned_cols=173  Identities=20%  Similarity=0.339  Sum_probs=146.1

Q ss_pred             CCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEEEEEE
Q ss_conf             5977444471028738999993-899699999933545885669999999999813899872000179995996999981
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV~E  587 (689)
                      ++|+..+.||+|+||+||+|+. .+|+.||||++...........++.+|++++++++|||||++++++.+.+..++|||
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e   81 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE   81 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCCEECCEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEEE
T ss_conf             99776517723768099999999999799999980222575899999999999986799838874453322432037886


Q ss_pred             CCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCCCCCC
Q ss_conf             36889988998319545789999999999999999999999499998198044689858669994999861477655699
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~~~~~  667 (689)
                      |+.++ +.+.+....  ...+++..+..++.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+|+.....
T Consensus        82 ~~~~~-~~~~~~~~~--~~~l~e~~~~~~~~qil~~L~yLH~~---~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~  155 (298)
T d1gz8a_          82 FLHQD-LKKFMDASA--LTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP  155 (298)
T ss_dssp             CCSEE-HHHHHHHTT--TTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSTTHHHHHCCC
T ss_pred             ECCCC-HHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHHCC---CEECCCCCCHHEEECCCCCCEECCCCCCEECCCC
T ss_conf             23774-455544202--56888899999999999999986528---8992135711401134676210357861343688


Q ss_pred             -CCCEEECCCCEEEECCCCCC
Q ss_conf             -84201156234992110233
Q 005587          668 -SVSQVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       668 -~~~~~~~~~~~~~ape~~~~  687 (689)
                       .......++..|+|||++..
T Consensus       156 ~~~~~~~~gt~~y~apE~~~~  176 (298)
T d1gz8a_         156 VRTYTHEVVTLWYRAPEILLG  176 (298)
T ss_dssp             SBCTTCCBCCCTTCCHHHHTT
T ss_pred             CCCCEEECCCCEEEEHHHHCC
T ss_conf             641001036521541122136

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-43  Score=237.93  Aligned_cols=171  Identities=22%  Similarity=0.387  Sum_probs=143.2

Q ss_pred             CCCCCCCEEEECCCEEEEEEEEC-CCC----EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEE
Q ss_conf             59774444710287389999938-996----9999993354588566999999999981389987200017999599699
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP-DGK----LLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRL  583 (689)
Q Consensus       509 ~~f~~~~~lG~G~~g~Vy~~~~~-~g~----~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~  583 (689)
                      ++|+..++||+|+||+||+|+.. +|+    .||||++..... ....++|.+|+.++++++|||||+++|+|.+. ..+
T Consensus         9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~-~~~   86 (317)
T d1xkka_           9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATS-PKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQ   86 (317)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC-----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESS-SEE
T ss_pred             HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCCCEEEEEEEEECC-CEE
T ss_conf             9997831982089929999999589988989999999651349-79999999999999867998881589999619-836


Q ss_pred             EEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCC
Q ss_conf             99813688998899831954578999999999999999999999949999819804468985866999499986147765
Q 005587          584 LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPL  663 (689)
Q Consensus       584 lV~Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~  663 (689)
                      +++||+.+|+|.+.+...   ...+++..+++|+.|||.||.|||+.   +|+||||||+|||++.++.+||+|||+|+.
T Consensus        87 ~v~e~~~~~~l~~~~~~~---~~~~~~~~~~~i~~qi~~gl~yLH~~---~iiHrDlKp~NIll~~~~~~kl~DFGla~~  160 (317)
T d1xkka_          87 LITQLMPFGCLLDYVREH---KDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKL  160 (317)
T ss_dssp             EEEECCTTCBHHHHHHHT---SSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCCSHHHH
T ss_pred             EEEEECCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCHHHCCEECCCCCEEEECCCCCEE
T ss_conf             999842687401011133---45799999999999999999999876---950476212031167998758602552223


Q ss_pred             CCCCCCCE---EECCCCEEEECCCCCC
Q ss_conf             56998420---1156234992110233
Q 005587          664 ISSGSVSQ---VSHNLTIMRAGGVTHR  687 (689)
Q Consensus       664 ~~~~~~~~---~~~~~~~~~ape~~~~  687 (689)
                      +.......   ...++..|+|||++.+
T Consensus       161 ~~~~~~~~~~~~~~gt~~y~APE~l~~  187 (317)
T d1xkka_         161 LGAEEKEYHAEGGKVPIKWMALESILH  187 (317)
T ss_dssp             TTTTCC--------CCTTTSCHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHC
T ss_conf             354445322365105864467088746

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-42  Score=236.94  Aligned_cols=178  Identities=21%  Similarity=0.286  Sum_probs=147.8

Q ss_pred             HCCCCCCCCEEEECCCEEEEEEEEC------CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECC
Q ss_conf             3159774444710287389999938------9969999993354588566999999999981389987200017999599
Q 005587          507 YTNSFSQENLIGAGMLGSVYRAQLP------DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHG  580 (689)
Q Consensus       507 ~~~~f~~~~~lG~G~~g~Vy~~~~~------~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~  580 (689)
                      ..++|...+.||+|+||.||+|.+.      ++..||||++.... .......|.+|+.++++++|||||+++|+|...+
T Consensus        18 ~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~-~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~   96 (308)
T d1p4oa_          18 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAA-SMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQ   96 (308)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTS-CHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSS
T ss_pred             CHHHEEEEEEEEECCCEEEEEEEECCCCCCCCCCEEEEEEECCCC-CHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCC
T ss_conf             689918835982078818999998786447789689999987012-8689999999999999769998841254784288


Q ss_pred             EEEEEEECCCCCCHHHHHHCCC------CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEE
Q ss_conf             6999981368899889983195------4578999999999999999999999949999819804468985866999499
Q 005587          581 QRLLIYEYCSNGTLQDMLHSDD------ELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVS  654 (689)
Q Consensus       581 ~~~lV~Ey~~~GsL~~~l~~~~------~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~k  654 (689)
                      ..++||||+++|+|.++++...      .....+++..+.+|+.|+|+||.|||+.   +|+||||||+|||+|.++.+|
T Consensus        97 ~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~---~ivHrDlk~~NiLld~~~~~K  173 (308)
T d1p4oa_          97 PTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVK  173 (308)
T ss_dssp             SCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSGGGEEECTTCCEE
T ss_pred             CEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEEECEECCCCEEECCCCEEE
T ss_conf             10677760489988999875033211344468879999999999999999987647---965432867754035996499


Q ss_pred             EEEECCCCCCCCCCCC---EEECCCCEEEECCCCCCC
Q ss_conf             9861477655699842---011562349921102337
Q 005587          655 VSDCGLAPLISSGSVS---QVSHNLTIMRAGGVTHRN  688 (689)
Q Consensus       655 i~DFGla~~~~~~~~~---~~~~~~~~~~ape~~~~~  688 (689)
                      |+|||+|+.+......   ....++..|+|||.+.++
T Consensus       174 l~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~  210 (308)
T d1p4oa_         174 IGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDG  210 (308)
T ss_dssp             ECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHC
T ss_pred             EEECCCCEECCCCCCEEECCCEECCCCCCCHHHHCCC
T ss_conf             9424542023577630313402316323788887369

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-41  Score=231.67  Aligned_cols=167  Identities=25%  Similarity=0.413  Sum_probs=139.9

Q ss_pred             CCEEEECCCEEEEEEEECCC----CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEE-CCEEEEEEEC
Q ss_conf             44471028738999993899----699999933545885669999999999813899872000179995-9969999813
Q 005587          514 ENLIGAGMLGSVYRAQLPDG----KLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAE-HGQRLLIYEY  588 (689)
Q Consensus       514 ~~~lG~G~~g~Vy~~~~~~g----~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~-~~~~~lV~Ey  588 (689)
                      .++||+|+||+||+|++.++    ..||||++.... ......+|.+|++.+++++|||||+++|++.. .+..++||||
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~-~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E~  110 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT-DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPY  110 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCCC-CHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEEC
T ss_pred             CEEEEECCCEEEEEEEEECCCCEEEEEEEEEECCCC-CHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEEEE
T ss_conf             669813688099999997799879999999988436-9789999999999998678999867867898069943899987


Q ss_pred             CCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCCCCCCC
Q ss_conf             68899889983195457899999999999999999999994999981980446898586699949998614776556998
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~~~~~~  668 (689)
                      |++|+|.++++..   ...+++..+++++.|++.||.|+|+.   +|+||||||+|||+++++.+||+|||+++.+....
T Consensus       111 ~~~g~l~~~~~~~---~~~~~~~~~~~i~~qia~gL~~lH~~---~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~  184 (311)
T d1r0pa_         111 MKHGDLRNFIRNE---THNPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKE  184 (311)
T ss_dssp             CTTCBHHHHHHCT---TCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTT
T ss_pred             EECCCHHHHHCCC---CCCCHHHHHHHHHHHHHHHHHHHCCC---CCCCCCCCHHHEEECCCCCEEEECCCCHHHCCCCC
T ss_conf             4067414421013---45404899999999988765200336---76257766875767799988991065232255665


Q ss_pred             CCE-----EECCCCEEEECCCCCC
Q ss_conf             420-----1156234992110233
Q 005587          669 VSQ-----VSHNLTIMRAGGVTHR  687 (689)
Q Consensus       669 ~~~-----~~~~~~~~~ape~~~~  687 (689)
                      ...     ...++..|+|||++..
T Consensus       185 ~~~~~~~~~~~gt~~y~aPE~~~~  208 (311)
T d1r0pa_         185 FDSVHNKTGAKLPVKWMALESLQT  208 (311)
T ss_dssp             CCCTTCTTCSSCCGGGSCHHHHHH
T ss_pred             CCCCEECCCCCCCCCCCCHHHHHC
T ss_conf             553100256555645567688743

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-43  Score=237.48  Aligned_cols=167  Identities=22%  Similarity=0.311  Sum_probs=140.4

Q ss_pred             CCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCCHH---HHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEEEEEECC
Q ss_conf             44471028738999993-8996999999335458856---6999999999981389987200017999599699998136
Q 005587          514 ENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQ---KDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEYC  589 (689)
Q Consensus       514 ~~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~~~---~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV~Ey~  589 (689)
                      .++||+|+||+||+|+. .+|+.||||++........   ....+.+|+.++++++|||||++++++...+..++||||+
T Consensus         3 l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~~   82 (299)
T d1ua2a_           3 LDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFM   82 (299)
T ss_dssp             EEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECC
T ss_pred             CEEECCCCCEEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEHHHHH
T ss_conf             63851272829999999999969999998420212456799999999999998679999868985422587402204553


Q ss_pred             CCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCCCCCCCC
Q ss_conf             88998899831954578999999999999999999999949999819804468985866999499986147765569984
Q 005587          590 SNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGSV  669 (689)
Q Consensus       590 ~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~~~~~~~  669 (689)
                      .++++..+...    ...+++..+..|+.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+|+.+.....
T Consensus        83 ~~~~~~~~~~~----~~~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~~  155 (299)
T d1ua2a_          83 ETDLEVIIKDN----SLVLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNR  155 (299)
T ss_dssp             SEEHHHHHTTC----CSSCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCC
T ss_pred             CCHHHHHHHHC----CCCCCHHHHHHHHHHHHHHHHHHHCC---CEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf             45077655412----66778999999999999999886316---355035776258853778411465761000578755


Q ss_pred             -CEEECCCCEEEECCCCCC
Q ss_conf             -201156234992110233
Q 005587          670 -SQVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       670 -~~~~~~~~~~~ape~~~~  687 (689)
                       .....++..|+|||++..
T Consensus       156 ~~~~~~gt~~y~aPE~~~~  174 (299)
T d1ua2a_         156 AYTHQVVTRWYRAPELLFG  174 (299)
T ss_dssp             CCCCSCCCCTTCCHHHHTT
T ss_pred             CCCCEECCHHHCCHHHHCC
T ss_conf             4330204733363999726

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-42  Score=236.21  Aligned_cols=178  Identities=25%  Similarity=0.363  Sum_probs=144.4

Q ss_pred             HCCCCCCCCEEEECCCEEEEEEEEC------CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCCCCCEECEEEEEC
Q ss_conf             3159774444710287389999938------996999999335458856699999999998138-998720001799959
Q 005587          507 YTNSFSQENLIGAGMLGSVYRAQLP------DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHANIVELKGYCAEH  579 (689)
Q Consensus       507 ~~~~f~~~~~lG~G~~g~Vy~~~~~------~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l-~Hpniv~l~~~~~~~  579 (689)
                      ..++|+..+.||+|+||.||+|+..      +++.||||++..... ....+.+.+|+..+.++ +|+|||.+++++...
T Consensus        11 ~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~-~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~   89 (299)
T d1ywna1          11 PRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT-HSEHRALMSELKILIHIGHHLNVVNLLGACTKP   89 (299)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----C-HHHHHHHHHHHHHHHHHCCCTTBCCEEEEECST
T ss_pred             CHHHEEEEEEEEECCCEEEEEEEECCCCCCCCCEEEEEEEECCCCC-CHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCC
T ss_conf             6799798449841678399999986777555783999999860017-178999999999988614998499741154047


Q ss_pred             -CEEEEEEECCCCCCHHHHHHCCCC------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEE
Q ss_conf             -969999813688998899831954------------5789999999999999999999999499998198044689858
Q 005587          580 -GQRLLIYEYCSNGTLQDMLHSDDE------------LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANIL  646 (689)
Q Consensus       580 -~~~~lV~Ey~~~GsL~~~l~~~~~------------~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NIL  646 (689)
                       ...++|||||++|+|.++++....            ....++|..++.|+.|+++||.|||+.   +|+||||||+|||
T Consensus        90 ~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~---~ivHrDlKp~NIL  166 (299)
T d1ywna1          90 GGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNIL  166 (299)
T ss_dssp             TSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEE
T ss_pred             CCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCEE
T ss_conf             9757999984589929999985366666532220233214689999999999999999988737---9717867731065


Q ss_pred             ECCCCCEEEEEECCCCCCCCCCCC---EEECCCCEEEECCCCCCC
Q ss_conf             669994999861477655699842---011562349921102337
Q 005587          647 LDDDLAVSVSDCGLAPLISSGSVS---QVSHNLTIMRAGGVTHRN  688 (689)
Q Consensus       647 ld~~~~~ki~DFGla~~~~~~~~~---~~~~~~~~~~ape~~~~~  688 (689)
                      ++.++.+||+|||+|+........   ....++..|+|||++.++
T Consensus       167 l~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~  211 (299)
T d1ywna1         167 LSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDR  211 (299)
T ss_dssp             ECGGGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHC
T ss_pred             ECCCCCEEECCCCCHHHCCCCCCCCCCCCEEECCCCCCHHHHHCC
T ss_conf             779982898457520011356652224751667210203686468

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=1.6e-42  Score=236.04  Aligned_cols=172  Identities=21%  Similarity=0.288  Sum_probs=148.7

Q ss_pred             CCCCCCCEEEECCCEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEEEEEEC
Q ss_conf             59774444710287389999938996999999335458856699999999998138998720001799959969999813
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYEY  588 (689)
Q Consensus       509 ~~f~~~~~lG~G~~g~Vy~~~~~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV~Ey  588 (689)
                      ++|...+.||+|+||+||+|+.++|+.||||++............+.+|+.++++++|||||++++++...+..++++||
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~   81 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CCCEECCEEECCCCCEEEEEEECCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEE
T ss_conf             99634318722778189999968999999999812326858999999999999867998687660120467731589974


Q ss_pred             CCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCCCCCCC
Q ss_conf             68899889983195457899999999999999999999994999981980446898586699949998614776556998
Q 005587          589 CSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSGS  668 (689)
Q Consensus       589 ~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~~~~~~  668 (689)
                      +.++.+..+...    ...+++..+..|+.|++.||.|||+.   +|+||||||+|||++.++.+|++|||+|.......
T Consensus        82 ~~~~~~~~~~~~----~~~l~~~~~~~i~~qi~~~L~~LH~~---~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~  154 (286)
T d1ob3a_          82 LDQDLKKLLDVC----EGGLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIADFGLARAFGIPV  154 (286)
T ss_dssp             CSEEHHHHHHTS----TTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC--
T ss_pred             EHHHHHHHHHHH----CCCCCHHHHHHHHHHHHHHHHHHCCC---CEEECCCCCCEEEECCCCCEEECCCCCCEECCCCC
T ss_conf             004567899860----47751445689999999999986057---48826787750568689978732366430114676


Q ss_pred             C-CEEECCCCEEEECCCCCC
Q ss_conf             4-201156234992110233
Q 005587          669 V-SQVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       669 ~-~~~~~~~~~~~ape~~~~  687 (689)
                      . .....++..|+|||++..
T Consensus       155 ~~~~~~~~~~~y~~pE~~~~  174 (286)
T d1ob3a_         155 RKYTHEIVTLWYRAPDVLMG  174 (286)
T ss_dssp             -------CCCTTCCHHHHTT
T ss_pred             CCCCEECCCCHHHHHHHHHC
T ss_conf             54101024311013788717

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=8.7e-42  Score=232.16  Aligned_cols=174  Identities=22%  Similarity=0.287  Sum_probs=147.2

Q ss_pred             CCCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCC-HHHHHHHHHHHHHHHCCCCCCCCEECEEEEECC----E
Q ss_conf             15977444471028738999993-89969999993354588-566999999999981389987200017999599----6
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASS-QQKDDEFLELVNNIDRIRHANIVELKGYCAEHG----Q  581 (689)
Q Consensus       508 ~~~f~~~~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~----~  581 (689)
                      .++|.+.+.||+|+||.||+|+. .+|+.||||.+...... ......+.+|+..+++++|||||++++++...+    .
T Consensus         6 ~drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~   85 (277)
T d1o6ya_           6 SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   85 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEE
T ss_pred             CCEEEEEEEEEECCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCE
T ss_conf             62069868996089929999999999989999998556646989999999999999856999887311435432688766


Q ss_pred             EEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCC
Q ss_conf             99998136889988998319545789999999999999999999999499998198044689858669994999861477
Q 005587          582 RLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA  661 (689)
Q Consensus       582 ~~lV~Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla  661 (689)
                      .|+||||++||+|.+++..    ...+++.....|+.|++.||.|||+.   +|+||||||+|||++.++..+++|||.+
T Consensus        86 ~~lvmE~~~g~~L~~~~~~----~~~l~~~~~~~i~~qi~~al~~lH~~---~iiHrDiKP~NIll~~~~~~~l~d~~~~  158 (277)
T d1o6ya_          86 PYIVMEYVDGVTLRDIVHT----EGPMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIA  158 (277)
T ss_dssp             EEEEEECCCEEEHHHHHHH----HCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTSCEEECCCTTC
T ss_pred             EEEEEECCCCCEEHHHHCC----CCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCCCCCCCCCCEEEHHHHH
T ss_conf             9999977889871011203----58999999999999999999999857---9527634675566575432010034443


Q ss_pred             CCCCCCC----CCEEECCCCEEEECCCCCCC
Q ss_conf             6556998----42011562349921102337
Q 005587          662 PLISSGS----VSQVSHNLTIMRAGGVTHRN  688 (689)
Q Consensus       662 ~~~~~~~----~~~~~~~~~~~~ape~~~~~  688 (689)
                      +......    ......++..|+|||++.+.
T Consensus       159 ~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~  189 (277)
T d1o6ya_         159 RAIADSGNSVTQTAAVIGTAQYLSPEQARGD  189 (277)
T ss_dssp             EECC----------------TTCCHHHHTTC
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCHHHHCCC
T ss_conf             2212354433334642576243699998399

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-42  Score=233.03  Aligned_cols=172  Identities=23%  Similarity=0.326  Sum_probs=143.3

Q ss_pred             CCCCCCCCEEEECCCEEEEEEEECC----CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEE
Q ss_conf             1597744447102873899999389----969999993354588566999999999981389987200017999599699
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQLPD----GKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRL  583 (689)
Q Consensus       508 ~~~f~~~~~lG~G~~g~Vy~~~~~~----g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~  583 (689)
                      .++|++.+.||+|+||.||+|+...    +..||||.+.... .......+.+|+..+++++|||||++++++. .+..+
T Consensus         6 ~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~-~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~   83 (273)
T d1mp8a_           6 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCT-SDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVW   83 (273)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTT-SHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCE
T ss_pred             HHHEEEEEEEEECCCCEEEEEEEECCCCEEEEEEEEEECCCC-CHHHHHHHHHHHHHHHHCCCCCEEEEEEEEE-CCEEE
T ss_conf             899698779930788299999993699644999999936566-8799999999999998689999856988995-37479


Q ss_pred             EEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCC
Q ss_conf             99813688998899831954578999999999999999999999949999819804468985866999499986147765
Q 005587          584 LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPL  663 (689)
Q Consensus       584 lV~Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~  663 (689)
                      +||||+++|+|.+++...   ...+++..++.++.|+++||.|||+.   +|+||||||+|||++.++.+||+|||+|+.
T Consensus        84 iv~E~~~~g~l~~~~~~~---~~~l~~~~~~~~~~qi~~gl~ylH~~---~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~  157 (273)
T d1mp8a_          84 IIMELCTLGELRSFLQVR---KYSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRY  157 (273)
T ss_dssp             EEEECCTTEEHHHHHHHT---TTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECC------
T ss_pred             EEEEECCCCCHHHHHHCC---CCCCCHHHHHHHHHHHHHHHHHHCCC---CEECCCCCHHHEEECCCCCEEECCCHHHEE
T ss_conf             999840698077654224---78999999999999998775230226---744141026553206789678765034213


Q ss_pred             CCCCCCC--EEECCCCEEEECCCCCC
Q ss_conf             5699842--01156234992110233
Q 005587          664 ISSGSVS--QVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       664 ~~~~~~~--~~~~~~~~~~ape~~~~  687 (689)
                      +......  ....++..|+|||++.+
T Consensus       158 ~~~~~~~~~~~~~gt~~y~apE~l~~  183 (273)
T d1mp8a_         158 MEDSTYYKASKGKLPIKWMAPESINF  183 (273)
T ss_dssp             -------------CCGGGCCHHHHHH
T ss_pred             CCCCCCEECCCEECCCCCCHHHHHCC
T ss_conf             36776233054005831032667516

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-41  Score=230.60  Aligned_cols=168  Identities=26%  Similarity=0.350  Sum_probs=138.5

Q ss_pred             CCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEEC------CEE
Q ss_conf             977444471028738999993-8996999999335458856699999999998138998720001799959------969
Q 005587          510 SFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEH------GQR  582 (689)
Q Consensus       510 ~f~~~~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~------~~~  582 (689)
                      +|+..++||+|+||+||+|+. .+|+.||||++.....      .+.+|+.++++++|+|||++++++...      .+.
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~------~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~   94 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR------FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYL   94 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS------SCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEE
T ss_pred             CCEEEEEEEECCCEEEEEEEECCCCCEEEEEEECCCCH------HHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCEEE
T ss_conf             76751698217683999999999997999999881606------899999999866898987387899744765773189


Q ss_pred             EEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCC-CEEEEEECCC
Q ss_conf             999813688998899831954578999999999999999999999949999819804468985866999-4999861477
Q 005587          583 LLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDL-AVSVSDCGLA  661 (689)
Q Consensus       583 ~lV~Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~-~~ki~DFGla  661 (689)
                      ++|||||++|.+..+.+ .......+++..+..|+.|++.||+|||+.   +|+||||||+|||++.++ .+||+|||++
T Consensus        95 ~lv~Ey~~~~~~~~l~~-~~~~~~~l~~~~~~~i~~qil~aL~yLH~~---~IiHrDiKp~NILl~~~~~~~kl~DFG~a  170 (350)
T d1q5ka_          95 NLVLDYVPETVYRVARH-YSRAKQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCDFGSA  170 (350)
T ss_dssp             EEEEECCSEEHHHHHHH-HHHTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTTCCEEECCCTTC
T ss_pred             EEEEECCCCCCHHHHHH-HHHCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCEEEEECCCCCEEEECCCCH
T ss_conf             99984168860788886-310368999999999999999999999866---87645788603787358971167336605


Q ss_pred             CCCCCCCCCEEECCCCEEEECCCCCC
Q ss_conf             65569984201156234992110233
Q 005587          662 PLISSGSVSQVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~ape~~~~  687 (689)
                      +.+..........++..|+|||++..
T Consensus       171 ~~~~~~~~~~~~~gt~~y~aPE~~~~  196 (350)
T d1q5ka_         171 KQLVRGEPNVSYICSRYYRAPELIFG  196 (350)
T ss_dssp             EECCTTSCCCSCCSCTTSCCHHHHTT
T ss_pred             HHCCCCCCCCCCCCCCCCCCHHHHHC
T ss_conf             44047765320025555568277640

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-41  Score=231.25  Aligned_cols=176  Identities=26%  Similarity=0.377  Sum_probs=147.7

Q ss_pred             CCCCCCCCEEEECCCEEEEEEEE------CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCCCCCEECEEEEECC
Q ss_conf             15977444471028738999993------8996999999335458856699999999998138-9987200017999599
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQL------PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHANIVELKGYCAEHG  580 (689)
Q Consensus       508 ~~~f~~~~~lG~G~~g~Vy~~~~------~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l-~Hpniv~l~~~~~~~~  580 (689)
                      .++|+..+.||+|+||.||+|++      .+++.||||+++.... .....++.+|+..+.++ +|||||+++++|.+..
T Consensus        22 ~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~-~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~  100 (311)
T d1t46a_          22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAH-LTEREALMSELKVLSYLGNHMNIVNLLGACTIGG  100 (311)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCC-HHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             HHHEEEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECC
T ss_conf             899698549820688299999980664477886999999874248-7799999999999876269998878998983199


Q ss_pred             EEEEEEECCCCCCHHHHHHCCCC--------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEE
Q ss_conf             69999813688998899831954--------------5789999999999999999999999499998198044689858
Q 005587          581 QRLLIYEYCSNGTLQDMLHSDDE--------------LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANIL  646 (689)
Q Consensus       581 ~~~lV~Ey~~~GsL~~~l~~~~~--------------~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NIL  646 (689)
                      ..++|||||++|+|.++++....              ....+++..+..|+.||++||.|||..   +++||||||+|||
T Consensus       101 ~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~---~ivHrDLKp~NIl  177 (311)
T d1t46a_         101 PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNIL  177 (311)
T ss_dssp             SCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEE
T ss_pred             EEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCCCCCCCC
T ss_conf             7899997379987999998535665444445332223345889999999999999999988757---9266624102100


Q ss_pred             ECCCCCEEEEEECCCCCCCCCCCCEE---ECCCCEEEECCCCCC
Q ss_conf             66999499986147765569984201---156234992110233
Q 005587          647 LDDDLAVSVSDCGLAPLISSGSVSQV---SHNLTIMRAGGVTHR  687 (689)
Q Consensus       647 ld~~~~~ki~DFGla~~~~~~~~~~~---~~~~~~~~ape~~~~  687 (689)
                      ++.++.+|++|||+++..........   ..++..|+|||++.+
T Consensus       178 ~~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  221 (311)
T d1t46a_         178 LTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFN  221 (311)
T ss_dssp             EETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHH
T ss_pred             CCCCCCCCCCCCCHHEECCCCCCCEEEEECCCCHHHCCHHHHCC
T ss_conf             00257521023401023367886158620135968767788617

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-41  Score=231.23  Aligned_cols=170  Identities=21%  Similarity=0.290  Sum_probs=146.6

Q ss_pred             HCCCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECC-----
Q ss_conf             315977444471028738999993-89969999993354588566999999999981389987200017999599-----
Q 005587          507 YTNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHG-----  580 (689)
Q Consensus       507 ~~~~f~~~~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~-----  580 (689)
                      ..+.|+..+.||+|+||+||+|.. .+|+.||||++..........+.+.+|+.++++++|||||+++++|...+     
T Consensus        16 ~~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~   95 (346)
T d1cm8a_          16 VRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDF   95 (346)
T ss_dssp             CBSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTC
T ss_pred             CCCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCC
T ss_conf             47718998898017781999999999998999999852225969999999999999866898754799986357655554


Q ss_pred             -EEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEEC
Q ss_conf             -6999981368899889983195457899999999999999999999994999981980446898586699949998614
Q 005587          581 -QRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCG  659 (689)
Q Consensus       581 -~~~lV~Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFG  659 (689)
                       +.++||||+ +++|..+.+.     ..+++..+..++.|++.||.|||+.   +|+||||||+|||++.++.+|++|||
T Consensus        96 ~~~~lv~e~~-~~~l~~~~~~-----~~l~~~~~~~~~~qi~~aL~~LH~~---~IiHrDiKp~NIL~~~~~~~kl~Dfg  166 (346)
T d1cm8a_          96 TDFYLVMPFM-GTDLGKLMKH-----EKLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILDFG  166 (346)
T ss_dssp             CCCEEEEECC-SEEHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCT
T ss_pred             CEEEEEEECC-CCCHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCHHHCCCCCCCCCCCCC
T ss_conf             1599998405-5218999874-----0226999999999999999998737---87645668511112100122113431


Q ss_pred             CCCCCCCCCCCEEECCCCEEEECCCCCC
Q ss_conf             7765569984201156234992110233
Q 005587          660 LAPLISSGSVSQVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       660 la~~~~~~~~~~~~~~~~~~~ape~~~~  687 (689)
                      +|+......  ....++..|+|||++.+
T Consensus       167 ~a~~~~~~~--~~~~~t~~y~aPE~~~~  192 (346)
T d1cm8a_         167 LARQADSEM--TGYVVTRWYRAPEVILN  192 (346)
T ss_dssp             TCEECCSSC--CSSCSCGGGCCTHHHHT
T ss_pred             CEECCCCCC--CCCCCCCCCCCHHHHCC
T ss_conf             022068763--10245533358899817

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-41  Score=230.65  Aligned_cols=172  Identities=21%  Similarity=0.284  Sum_probs=142.9

Q ss_pred             HCCCCCCCCEEEECCCEEEEEEE-ECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECC----E
Q ss_conf             31597744447102873899999-389969999993354588566999999999981389987200017999599----6
Q 005587          507 YTNSFSQENLIGAGMLGSVYRAQ-LPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHG----Q  581 (689)
Q Consensus       507 ~~~~f~~~~~lG~G~~g~Vy~~~-~~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~----~  581 (689)
                      .+++|...+.||+|+||+||+|+ ..+|+.||||++.... .....+.+.+|+.++++++|||||++++++....    .
T Consensus         6 i~~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~-~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~   84 (345)
T d1pmea_           6 VGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFE-HQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMK   84 (345)
T ss_dssp             CCTTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTT-CHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCC
T ss_pred             CCCCEEEEEEEEECCCEEEEEEEECCCCCEEEEEEEEHHC-CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCC
T ss_conf             3898599789940648099999999999499999980310-958999999999999976898988588899505645541


Q ss_pred             EEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCC
Q ss_conf             99998136889988998319545789999999999999999999999499998198044689858669994999861477
Q 005587          582 RLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA  661 (689)
Q Consensus       582 ~~lV~Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla  661 (689)
                      .+++++|+.+|+|.+++..     ..+++..+..++.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+|
T Consensus        85 ~~~l~~~~~~g~L~~~l~~-----~~l~~~~i~~i~~qil~al~yLH~~---~iiHRDIKp~NILl~~~~~~kl~DfG~a  156 (345)
T d1pmea_          85 DVYLVTHLMGADLYKLLKT-----QHLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGLA  156 (345)
T ss_dssp             CEEEEEECCCEEHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred             EEEEEEEECCCCHHHHHHC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCEEEECCCCCEEECCCCCE
T ss_conf             4999996259865664405-----8999999999999999999999978---9867778764378879997787545705


Q ss_pred             CCCCCCCC----CEEECCCCEEEECCCCCC
Q ss_conf             65569984----201156234992110233
Q 005587          662 PLISSGSV----SQVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       662 ~~~~~~~~----~~~~~~~~~~~ape~~~~  687 (689)
                      +.......    .....++..|+|||++..
T Consensus       157 ~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~  186 (345)
T d1pmea_         157 RVADPDHDHTGFLTEYVATRWYRAPEIMLN  186 (345)
T ss_dssp             EECCGGGCBCCTTCCCCSCGGGCCGGGTTT
T ss_pred             EECCCCCCCCEEECCCCCCCEECHHHHHHC
T ss_conf             650477764101011026520003878604

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-42  Score=234.36  Aligned_cols=167  Identities=28%  Similarity=0.431  Sum_probs=142.7

Q ss_pred             CCCCCCCEEEECCCEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEE-CCEEEEEEE
Q ss_conf             5977444471028738999993899699999933545885669999999999813899872000179995-996999981
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAE-HGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~lG~G~~g~Vy~~~~~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~-~~~~~lV~E  587 (689)
                      ++|+..+.||+|+||.||+|++ .|..||||+++...    ..+++.+|++.+++++|||||+++|+|.+ .+..++|||
T Consensus         7 ~~~~~~~~lG~G~fg~Vy~~~~-~~~~vAvK~i~~~~----~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~e   81 (262)
T d1byga_           7 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA----TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTE   81 (262)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC------HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEEC
T ss_pred             HHEEEEEEEECCCCEEEEEEEE-CCEEEEEEEECCHH----HHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEEE
T ss_conf             9948857982079808999999-99099999988577----799999999999867898985498788723892899996


Q ss_pred             CCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCCCCCC
Q ss_conf             36889988998319545789999999999999999999999499998198044689858669994999861477655699
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~~~~~  667 (689)
                      |+++|+|.+++....  ...++|..+++|+.||+.||.|||+.   +|+||||||+|||++.++.+|++|||+++.....
T Consensus        82 y~~~g~L~~~l~~~~--~~~l~~~~~~~i~~~i~~al~ylH~~---~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~  156 (262)
T d1byga_          82 YMAKGSLVDYLRSRG--RSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST  156 (262)
T ss_dssp             CCTTEEHHHHHHHHH--HHHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC-------
T ss_pred             CCCCCCHHHHHHHCC--CCCCCHHHHHHHHHHHHHHCCCCCCC---CEECCCCCHHHHEECCCCCEEECCCCCCEECCCC
T ss_conf             369998999987457--88889999999999998523211337---6553666567601468997763245600344787


Q ss_pred             CCCEEECCCCEEEECCCCCC
Q ss_conf             84201156234992110233
Q 005587          668 SVSQVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       668 ~~~~~~~~~~~~~ape~~~~  687 (689)
                      .  ....++..|+|||++.+
T Consensus       157 ~--~~~~~~~~y~aPE~l~~  174 (262)
T d1byga_         157 Q--DTGKLPVKWTAPEALRE  174 (262)
T ss_dssp             -------CCTTTSCHHHHHH
T ss_pred             C--CCCCCCCCCCCHHHHHC
T ss_conf             7--65566646778178727

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=6.7e-41  Score=227.55  Aligned_cols=164  Identities=20%  Similarity=0.326  Sum_probs=142.2

Q ss_pred             CCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC-CCCCCEECEEEEEC--CEEEE
Q ss_conf             5977444471028738999993-89969999993354588566999999999981389-98720001799959--96999
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR-HANIVELKGYCAEH--GQRLL  584 (689)
Q Consensus       509 ~~f~~~~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~-Hpniv~l~~~~~~~--~~~~l  584 (689)
                      ++|++.++||+|+||+||+|+. .+++.||||++...     ...++.+|+.++.+++ ||||+++++++...  ...++
T Consensus        35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~-----~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~  109 (328)
T d3bqca1          35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV-----KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPAL  109 (328)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSS-----CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEE
T ss_pred             CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEECHH-----HHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEE
T ss_conf             6718978983174819999998899979999998889-----99999999999985157998767999998168771268


Q ss_pred             EEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCC-CEEEEEECCCCC
Q ss_conf             9813688998899831954578999999999999999999999949999819804468985866999-499986147765
Q 005587          585 IYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDL-AVSVSDCGLAPL  663 (689)
Q Consensus       585 V~Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~-~~ki~DFGla~~  663 (689)
                      ||||+++|+|..+.       ..+++..+..|+.|++.||.|||+.   +|+||||||+|||++.++ .+||+|||+|+.
T Consensus       110 v~e~~~~~~L~~~~-------~~l~e~~i~~i~~qil~aL~~LH~~---gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~  179 (328)
T d3bqca1         110 VFEHVNNTDFKQLY-------QTLTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEF  179 (328)
T ss_dssp             EEECCCSCBGGGTT-------TSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCGGGCEE
T ss_pred             EEEECCCCCHHHHH-------CCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCEEECCCCCEEEECCCCCCEE
T ss_conf             88631798589974-------6899999999999999999887643---3443456441237748998366415654266


Q ss_pred             CCCCCCCEEECCCCEEEECCCCCC
Q ss_conf             569984201156234992110233
Q 005587          664 ISSGSVSQVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       664 ~~~~~~~~~~~~~~~~~ape~~~~  687 (689)
                      +.+........++..|+|||++..
T Consensus       180 ~~~~~~~~~~~~t~~y~aPE~~~~  203 (328)
T d3bqca1         180 YHPGQEYNVRVASRYFKGPELLVD  203 (328)
T ss_dssp             CCTTCCCCSCCSCGGGCCHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             468874443224864247610268

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-41  Score=229.33  Aligned_cols=175  Identities=25%  Similarity=0.373  Sum_probs=146.4

Q ss_pred             CCCCCCCEEEECCCEEEEEEEECC--------CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCCCCCEECEEEEEC
Q ss_conf             597744447102873899999389--------96999999335458856699999999998138-998720001799959
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLPD--------GKLLAVKKLDKRASSQQKDDEFLELVNNIDRI-RHANIVELKGYCAEH  579 (689)
Q Consensus       509 ~~f~~~~~lG~G~~g~Vy~~~~~~--------g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l-~Hpniv~l~~~~~~~  579 (689)
                      ++|.+.+.||+|+||.||+|+...        +..||||++..... .....++.+|...+.++ +|||||+++++|.+.
T Consensus        13 ~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~-~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~~   91 (299)
T d1fgka_          13 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDAT-EKDLSDLISEMEMMKMIGKHKNIINLLGACTQD   91 (299)
T ss_dssp             GGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCC-HHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             HHEEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEEECCCCC-HHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf             9969700985167828999998578755566754999999881128-688999999999999813999697346522018


Q ss_pred             CEEEEEEECCCCCCHHHHHHCCCC------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEE
Q ss_conf             969999813688998899831954------------57899999999999999999999994999981980446898586
Q 005587          580 GQRLLIYEYCSNGTLQDMLHSDDE------------LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILL  647 (689)
Q Consensus       580 ~~~~lV~Ey~~~GsL~~~l~~~~~------------~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILl  647 (689)
                      +..++||||+++|+|.+++.....            ....+++..+++++.|++.||.|||+.   +|+||||||+|||+
T Consensus        92 ~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~---~ivHrDiKp~NiLl  168 (299)
T d1fgka_          92 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLV  168 (299)
T ss_dssp             SSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEE
T ss_pred             CEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEEEEEECCCCEEE
T ss_conf             868999973699909999986067764322233457434679999999999999999876637---97863022102245


Q ss_pred             CCCCCEEEEEECCCCCCCCCCCC---EEECCCCEEEECCCCCC
Q ss_conf             69994999861477655699842---01156234992110233
Q 005587          648 DDDLAVSVSDCGLAPLISSGSVS---QVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       648 d~~~~~ki~DFGla~~~~~~~~~---~~~~~~~~~~ape~~~~  687 (689)
                      +.++.+||+|||+++........   ....++..|+|||++.+
T Consensus       169 ~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~  211 (299)
T d1fgka_         169 TEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFD  211 (299)
T ss_dssp             CTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHH
T ss_pred             CCCCCEEECCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf             4789767622111011355555431466788846632667517

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-41  Score=230.00  Aligned_cols=172  Identities=19%  Similarity=0.252  Sum_probs=142.6

Q ss_pred             CCCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCCH----HHHHHHHHHHHHHHCCC--CCCCCEECEEEEECC
Q ss_conf             15977444471028738999993-899699999933545885----66999999999981389--987200017999599
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQ----QKDDEFLELVNNIDRIR--HANIVELKGYCAEHG  580 (689)
Q Consensus       508 ~~~f~~~~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~~----~~~~~~~~e~~~l~~l~--Hpniv~l~~~~~~~~  580 (689)
                      .++|.+.++||+|+||.||+|+. .+|+.||||++.......    ....++.+|+.++++++  |||||++++++.+.+
T Consensus         3 ~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~   82 (273)
T d1xwsa_           3 ESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPD   82 (273)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSS
T ss_pred             CCEEEEEEEEEECCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECC
T ss_conf             88379967984087839999999999979999998568844334556799999999999974358988127999983099


Q ss_pred             EEEEEEECCCC-CCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCC-CCEEEEEE
Q ss_conf             69999813688-99889983195457899999999999999999999994999981980446898586699-94999861
Q 005587          581 QRLLIYEYCSN-GTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDD-LAVSVSDC  658 (689)
Q Consensus       581 ~~~lV~Ey~~~-GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~-~~~ki~DF  658 (689)
                      ..++||||+.+ +++.+++..    ...+++..+..++.|++.||.|||+.   +|+||||||+|||++.+ +.+||+||
T Consensus        83 ~~~lv~e~~~~~~~l~~~~~~----~~~l~e~~~~~~~~qi~~al~~lH~~---~iiHrDiKp~NIll~~~~~~vkl~DF  155 (273)
T d1xwsa_          83 SFVLILERPEPVQDLFDFITE----RGALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENILIDLNRGELKLIDF  155 (273)
T ss_dssp             EEEEEEECCSSEEEHHHHHHH----HCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCC
T ss_pred             EEEEEEEECCCCCHHHHHHHC----CCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCEEEECCCCEEEECCC
T ss_conf             689999833686228999861----58999999999999999999999877---97556676111477447884897754


Q ss_pred             CCCCCCCCCCCCEEECCCCEEEECCCCCC
Q ss_conf             47765569984201156234992110233
Q 005587          659 GLAPLISSGSVSQVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       659 Gla~~~~~~~~~~~~~~~~~~~ape~~~~  687 (689)
                      |+|+....... ....++..|+|||++.+
T Consensus       156 G~a~~~~~~~~-~~~~GT~~y~aPE~~~~  183 (273)
T d1xwsa_         156 GSGALLKDTVY-TDFDGTRVYSPPEWIRY  183 (273)
T ss_dssp             TTCEECCSSCB-CCCCSCGGGSCHHHHHH
T ss_pred             CCCEECCCCCC-CCCCCCCCCCCHHHHCC
T ss_conf             65353244455-66565877479999848

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-41  Score=227.90  Aligned_cols=176  Identities=22%  Similarity=0.314  Sum_probs=141.4

Q ss_pred             HCCCCCCCCEEEECCCEEEEEEEE-CC-CCEEEEEEECCCCCCHHHHHHHHHHHHHH---HCCCCCCCCEECEEEEE---
Q ss_conf             315977444471028738999993-89-96999999335458856699999999998---13899872000179995---
Q 005587          507 YTNSFSQENLIGAGMLGSVYRAQL-PD-GKLLAVKKLDKRASSQQKDDEFLELVNNI---DRIRHANIVELKGYCAE---  578 (689)
Q Consensus       507 ~~~~f~~~~~lG~G~~g~Vy~~~~-~~-g~~vAVK~i~~~~~~~~~~~~~~~e~~~l---~~l~Hpniv~l~~~~~~---  578 (689)
                      ..++|++.+.||+|+||+||+|+. ++ ++.||||++............+.+|+..+   +..+|||||+++++|..   
T Consensus         5 ~~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~   84 (305)
T d1blxa_           5 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT   84 (305)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred             CCCCEEEEEEEECCCCEEEEEEEEECCCCEEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
T ss_conf             75897988899215586999999988899899999980232451679999999999998742589880236632214666


Q ss_pred             --CCEEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEE
Q ss_conf             --996999981368899889983195457899999999999999999999994999981980446898586699949998
Q 005587          579 --HGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVS  656 (689)
Q Consensus       579 --~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~  656 (689)
                        ....+++|||+.+|.+.......   ...+++.....|+.|++.||.|||+.   +|+||||||+|||++.++.+||+
T Consensus        85 ~~~~~~~~~~e~~~~~~~~~~~~~~---~~~~~~~~~~~~~~qi~~aL~yLH~~---~ivHrDiKp~NILi~~~~~~kl~  158 (305)
T d1blxa_          85 DRETKLTLVFEHVDQDLTTYLDKVP---EPGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLA  158 (305)
T ss_dssp             SSEEEEEEEEECCSCBHHHHHHHSC---TTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEEC
T ss_pred             CCCCEEEEEEEECCCCCHHHHHHCC---CCCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCCCCCEEEECCCCCEEEC
T ss_conf             6674699999740587144444303---78999899999999999999999758---89835798627898589975421


Q ss_pred             EECCCCCCCCCCCCEEECCCCEEEECCCCCCC
Q ss_conf             61477655699842011562349921102337
Q 005587          657 DCGLAPLISSGSVSQVSHNLTIMRAGGVTHRN  688 (689)
Q Consensus       657 DFGla~~~~~~~~~~~~~~~~~~~ape~~~~~  688 (689)
                      |||+++............+|..|+|||++.+.
T Consensus       159 dfg~~~~~~~~~~~~~~~gT~~Y~APE~~~~~  190 (305)
T d1blxa_         159 DFGLARIYSFQMALTSVVVTLWYRAPEVLLQS  190 (305)
T ss_dssp             SCCSCCCCCGGGGGCCCCCCCTTCCHHHHTTC
T ss_pred             CHHHHHHHCCCCCCCCCCCCHHHCCCCHHCCC
T ss_conf             00010110023457776548511483100179

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-40  Score=222.47  Aligned_cols=173  Identities=17%  Similarity=0.305  Sum_probs=149.9

Q ss_pred             CCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEEEEEE
Q ss_conf             5977444471028738999993-899699999933545885669999999999813899872000179995996999981
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE  587 (689)
Q Consensus       509 ~~f~~~~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV~E  587 (689)
                      ++|++.+.||+|+||+||+|+. .+++.||||+++..........++.+|+.++++++|||||++++++......++|+|
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~   81 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             CCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEEE
T ss_conf             99786269712868199999999999699999980321786899999999999985675788821354444431158863


Q ss_pred             CCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCCCCCC
Q ss_conf             36889988998319545789999999999999999999999499998198044689858669994999861477655699
Q 005587          588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG  667 (689)
Q Consensus       588 y~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~~~~~  667 (689)
                      |+.++++..++..    ...+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||.|+.....
T Consensus        82 ~~~~~~l~~~~~~----~~~~~~~~~~~~~~q~~~aL~~lH~~---~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~  154 (292)
T d1unla_          82 FCDQDLKKYFDSC----NGDLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGLARAFGIP  154 (292)
T ss_dssp             CCSEEHHHHHHHT----TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSC
T ss_pred             ECCCCCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHCC---CEEEECCCCCCCCCCCCCCEEEEECCHHHCCCCC
T ss_conf             0233222112123----56540367899999999998774339---9860014676121133782665204601104688


Q ss_pred             C-CCEEECCCCEEEECCCCCCC
Q ss_conf             8-42011562349921102337
Q 005587          668 S-VSQVSHNLTIMRAGGVTHRN  688 (689)
Q Consensus       668 ~-~~~~~~~~~~~~ape~~~~~  688 (689)
                      . .......+.++++||++..+
T Consensus       155 ~~~~~~~~~~~~~~~pe~~~~~  176 (292)
T d1unla_         155 VRCYSAEVVTLWYRPPDVLFGA  176 (292)
T ss_dssp             CSCCCSCCSCGGGCCHHHHTTC
T ss_pred             CCCCEEECCCCCHHHHHHHCCC
T ss_conf             7510010344310146675069

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-41  Score=227.95  Aligned_cols=172  Identities=23%  Similarity=0.317  Sum_probs=141.8

Q ss_pred             CCCCCCCEEEECCCEEEEEEEEC--CC--CEEEEEEECCCCCC-HHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEE
Q ss_conf             59774444710287389999938--99--69999993354588-566999999999981389987200017999599699
Q 005587          509 NSFSQENLIGAGMLGSVYRAQLP--DG--KLLAVKKLDKRASS-QQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRL  583 (689)
Q Consensus       509 ~~f~~~~~lG~G~~g~Vy~~~~~--~g--~~vAVK~i~~~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~  583 (689)
                      ++|+..+.||+|+||.||+|++.  ++  ..||||++...... ....++|.+|+.++++++|||||+++|+|.+. ..+
T Consensus         8 ~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~~-~~~   86 (273)
T d1u46a_           8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTP-PMK   86 (273)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS-SCE
T ss_pred             HHEEEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEC-CHH
T ss_conf             8919978980388839999999889990799999999835557989999999999999868999987898777401-001


Q ss_pred             EEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCC
Q ss_conf             99813688998899831954578999999999999999999999949999819804468985866999499986147765
Q 005587          584 LIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPL  663 (689)
Q Consensus       584 lV~Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~  663 (689)
                      +||||+++|++.+.+...   ...+++..++.++.|++.||.|||+.   +|+||||||+|||++.++.+||+|||+++.
T Consensus        87 lv~e~~~~~~l~~~~~~~---~~~l~~~~~~~~~~qi~~gl~ylH~~---~iiHrDikp~NIll~~~~~vkl~DfGl~~~  160 (273)
T d1u46a_          87 MVTELAPLGSLLDRLRKH---QGHFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKIGDFGLMRA  160 (273)
T ss_dssp             EEEECCTTCBHHHHHHHH---GGGSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCEE
T ss_pred             EEEEEECCCCHHHHHHCC---CCCCCHHHHHHHHHHHHHHHHHHHHC---CEEEEEECHHHHCCCCCCCEEECCCHHHHH
T ss_conf             146542386125444212---68999999999999999999875217---875205668881565565433256115553


Q ss_pred             CCCCCCCE----EECCCCEEEECCCCCC
Q ss_conf             56998420----1156234992110233
Q 005587          664 ISSGSVSQ----VSHNLTIMRAGGVTHR  687 (689)
Q Consensus       664 ~~~~~~~~----~~~~~~~~~ape~~~~  687 (689)
                      +.......    ...++..|+|||++.+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~aPE~~~~  188 (273)
T d1u46a_         161 LPQNDDHYVMQEHRKVPFAWCAPESLKT  188 (273)
T ss_dssp             CCC-CCEEEC-----CCGGGCCHHHHHH
T ss_pred             CCCCCCCCEECCCCCCCCCCCCHHHHHC
T ss_conf             0358875265476325731079999837

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-40  Score=223.54  Aligned_cols=172  Identities=22%  Similarity=0.335  Sum_probs=142.4

Q ss_pred             CCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEE--------C
Q ss_conf             5977444471028738999993-899699999933545885669999999999813899872000179995--------9
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAE--------H  579 (689)
Q Consensus       509 ~~f~~~~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~--------~  579 (689)
                      ++|++.+.||+|+||+||+|+. .+|+.||||++......+....++.+|+.++++++|+|++++++++..        .
T Consensus        10 ~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~~   89 (318)
T d3blha1          10 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCK   89 (318)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC---------
T ss_pred             CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCC
T ss_conf             79889999722748299999998999799999984222463789999999999998359996606765402465444457


Q ss_pred             CEEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEEC
Q ss_conf             96999981368899889983195457899999999999999999999994999981980446898586699949998614
Q 005587          580 GQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCG  659 (689)
Q Consensus       580 ~~~~lV~Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFG  659 (689)
                      ...++||||+.++.+......    ...+++.....|+.|++.||.|||+.   +|+||||||+|||++.++.+|++|||
T Consensus        90 ~~~~iv~e~~~~~~~~~~~~~----~~~~~~~~~~~i~~qil~~l~~lH~~---~ivHrDlKp~NILl~~~~~~kl~dfg  162 (318)
T d3blha1          90 GSIYLVFDFCEHDLAGLLSNV----LVKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKLADFG  162 (318)
T ss_dssp             -CEEEEEECCCEEHHHHHTCT----TCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCT
T ss_pred             CEEEEEEECCCCCCCCHHHHC----CCCCCCHHHHHHHHHHHHHHHHHCCC---CEEECCCCCHHEEECCCCCEEEEECC
T ss_conf             638999853578741012220----34433089999999999999885229---98856767222036689968763135


Q ss_pred             CCCCCCCCC-----CCEEECCCCEEEECCCCCC
Q ss_conf             776556998-----4201156234992110233
Q 005587          660 LAPLISSGS-----VSQVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       660 la~~~~~~~-----~~~~~~~~~~~~ape~~~~  687 (689)
                      +++.+....     ......++..|+|||++..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~  195 (318)
T d3blha1         163 LARAFSLAKNSQPNRYTNRVVTLWYRPPELLLG  195 (318)
T ss_dssp             TCEECCC-----CCCCCSCCSCGGGCCHHHHTT
T ss_pred             EEEECCCCCCCCCCCCCCEECCHHHHHHHHHCC
T ss_conf             002235544432113566024978742899707

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-40  Score=223.19  Aligned_cols=171  Identities=20%  Similarity=0.244  Sum_probs=148.2

Q ss_pred             CCCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEEC------C
Q ss_conf             15977444471028738999993-8996999999335458856699999999998138998720001799959------9
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEH------G  580 (689)
Q Consensus       508 ~~~f~~~~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~------~  580 (689)
                      .++|++.++||+|+||+||+|+. .+|+.||||++............+.+|+.++++++|||||++++++...      .
T Consensus        16 ~~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~   95 (355)
T d2b1pa1          16 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ   95 (355)
T ss_dssp             ETTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred             CCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCC
T ss_conf             37759988962175859999999999989999998823369799999999999998648987648998970256434576


Q ss_pred             EEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECC
Q ss_conf             69999813688998899831954578999999999999999999999949999819804468985866999499986147
Q 005587          581 QRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGL  660 (689)
Q Consensus       581 ~~~lV~Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGl  660 (689)
                      ..|+||||+.++ +.+.+.      ..+++.....++.|++.||.|||+.   +|+||||||+|||++.++..|++|||+
T Consensus        96 ~~~iv~Ey~~~~-l~~~~~------~~~~~~~i~~~~~qil~gl~~LH~~---giiHrDlKP~Nil~~~~~~~kl~df~~  165 (355)
T d2b1pa1          96 DVYLVMELMDAN-LCQVIQ------MELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGL  165 (355)
T ss_dssp             EEEEEEECCSEE-HHHHHT------SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC
T ss_pred             EEEEEEECCCHH-HHHHHH------CCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCCCCCCCCCEEEECHHH
T ss_conf             269998414467-787650------3899999999999999999886522---112456776321136544313201023


Q ss_pred             CCCCCCCCCCEEECCCCEEEECCCCCCC
Q ss_conf             7655699842011562349921102337
Q 005587          661 APLISSGSVSQVSHNLTIMRAGGVTHRN  688 (689)
Q Consensus       661 a~~~~~~~~~~~~~~~~~~~ape~~~~~  688 (689)
                      ++............++..|+|||++.+.
T Consensus       166 ~~~~~~~~~~~~~~~t~~y~aPE~l~~~  193 (355)
T d2b1pa1         166 ARTAGTSFMMTPYVVTRYYRAPEVILGM  193 (355)
T ss_dssp             ---------------CCTTCCHHHHTTC
T ss_pred             HHCCCCCCCCCCCCCCCCCCCHHHHCCC
T ss_conf             2114666553322146555581331477

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-40  Score=223.56  Aligned_cols=171  Identities=20%  Similarity=0.279  Sum_probs=145.5

Q ss_pred             HCCCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEEC-----C
Q ss_conf             315977444471028738999993-8996999999335458856699999999998138998720001799959-----9
Q 005587          507 YTNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEH-----G  580 (689)
Q Consensus       507 ~~~~f~~~~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~-----~  580 (689)
                      ..++|+..+.||+|+||+||+|+. .+|+.||||++..........+.+.+|+.++++++|||+|++++++...     .
T Consensus        16 ~~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~   95 (348)
T d2gfsa1          16 VPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEF   95 (348)
T ss_dssp             EETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTC
T ss_pred             CCCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEECCHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCC
T ss_conf             89871888898317883999999999997999999882002868999999999999866898742599999634645668


Q ss_pred             EEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECC
Q ss_conf             69999813688998899831954578999999999999999999999949999819804468985866999499986147
Q 005587          581 QRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGL  660 (689)
Q Consensus       581 ~~~lV~Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGl  660 (689)
                      ..++++||+.+|+|.+++..     ..+++..+..|+.|++.||.|||+.   +|+||||||+|||++.++.+|++|||+
T Consensus        96 ~~~~i~~~~~gg~L~~~~~~-----~~l~e~~~~~i~~qil~aL~~LH~~---giiHrDiKp~NILi~~~~~~kl~dfg~  167 (348)
T d2gfsa1          96 NDVYLVTHLMGADLNNIVKC-----QKLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGL  167 (348)
T ss_dssp             CCCEEEEECCSEEHHHHHTT-----CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCC--
T ss_pred             CEEEEEEEECCCCHHHHCCC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf             64999996258862320022-----4530999999999999999999738---876516677633455432200132100


Q ss_pred             CCCCCCCCCCEEECCCCEEEECCCCCC
Q ss_conf             765569984201156234992110233
Q 005587          661 APLISSGSVSQVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       661 a~~~~~~~~~~~~~~~~~~~ape~~~~  687 (689)
                      |.......  ....++..|+|||+..+
T Consensus       168 a~~~~~~~--~~~~g~~~y~apE~~~~  192 (348)
T d2gfsa1         168 ARHTDDEM--TGYVATRWYRAPEIMLN  192 (348)
T ss_dssp             --CCTGGG--SSSCHHHHTSCHHHHTT
T ss_pred             HCCCCCCC--CCCCCCCCCCCCHHHCC
T ss_conf             01257544--44345435558355337

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-39  Score=220.95  Aligned_cols=172  Identities=23%  Similarity=0.280  Sum_probs=144.2

Q ss_pred             CCCCCCCEEEECCCEEEEEEEE----CCCCEEEEEEECCCCCC--HHHHHHHHHHHHHHHCCCC-CCCCEECEEEEECCE
Q ss_conf             5977444471028738999993----89969999993354588--5669999999999813899-872000179995996
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL----PDGKLLAVKKLDKRASS--QQKDDEFLELVNNIDRIRH-ANIVELKGYCAEHGQ  581 (689)
Q Consensus       509 ~~f~~~~~lG~G~~g~Vy~~~~----~~g~~vAVK~i~~~~~~--~~~~~~~~~e~~~l~~l~H-pniv~l~~~~~~~~~  581 (689)
                      ++|+..+.||+|+||+||+|+.    .+|+.||||.+......  ....+.+.+|+.++++++| |||+++++++.+...
T Consensus        24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~  103 (322)
T d1vzoa_          24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK  103 (322)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred             HCEEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEEEEHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCC
T ss_conf             02599989832878399999987658879489999983677210168999999999999864679839996200024873


Q ss_pred             EEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCC
Q ss_conf             99998136889988998319545789999999999999999999999499998198044689858669994999861477
Q 005587          582 RLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLA  661 (689)
Q Consensus       582 ~~lV~Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla  661 (689)
                      .++||||+.+|+|.+++...    ..+.......++.|++.||.|+|+.   +|+||||||+|||++.++.+||+|||+|
T Consensus       104 ~~~v~e~~~~~~L~~~i~~~----~~~~e~~~~~~~~Qi~~al~~lH~~---~ivHrDiKp~Nill~~~~~vkL~DFG~a  176 (322)
T d1vzoa_         104 LHLILDYINGGELFTHLSQR----ERFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLS  176 (322)
T ss_dssp             EEEEECCCCSCBHHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEESCSSEE
T ss_pred             EEEEEECCCCCHHHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHHCC---CEEECCCCCCCEEECCCCCEEEEECCCH
T ss_conf             00123123411799998730----4543788888899999999885149---9896547732012469998887413202


Q ss_pred             CCCCCCCC--CEEECCCCEEEECCCCCC
Q ss_conf             65569984--201156234992110233
Q 005587          662 PLISSGSV--SQVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       662 ~~~~~~~~--~~~~~~~~~~~ape~~~~  687 (689)
                      +.+.....  .....++..|++||++..
T Consensus       177 ~~~~~~~~~~~~~~~g~~~~~~pe~~~~  204 (322)
T d1vzoa_         177 KEFVADETERAYDFCGTIEYMAPDIVRG  204 (322)
T ss_dssp             EECCGGGGGGGCGGGSCCTTCCHHHHTT
T ss_pred             HHHCCCCCCCCCCCCCCCCCCHHHHHHC
T ss_conf             2203444432212223333310687605

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=1.1e-37  Score=210.82  Aligned_cols=169  Identities=15%  Similarity=0.189  Sum_probs=139.8

Q ss_pred             CCCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC-CCCCEECEEEEECCEEEEE
Q ss_conf             15977444471028738999993-899699999933545885669999999999813899-8720001799959969999
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRH-ANIVELKGYCAEHGQRLLI  585 (689)
Q Consensus       508 ~~~f~~~~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~H-pniv~l~~~~~~~~~~~lV  585 (689)
                      .++|.+.+.||+|+||+||+|+. .+|+.||||.+.....    ...+.+|++.+..+.| +|++.+++++......++|
T Consensus         4 g~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~----~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~v   79 (293)
T d1csna_           4 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD----APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLV   79 (293)
T ss_dssp             TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT----SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEE
T ss_pred             CCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCC----CHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEE
T ss_conf             9806997998417882999999988997999999750258----299999999999964899987799996018811799


Q ss_pred             EECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECC-----CCCEEEEEECC
Q ss_conf             8136889988998319545789999999999999999999999499998198044689858669-----99499986147
Q 005587          586 YEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDD-----DLAVSVSDCGL  660 (689)
Q Consensus       586 ~Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~-----~~~~ki~DFGl  660 (689)
                      |||+ +|+|.+++...   ...+++.....++.|++.||.|||+.   +|+||||||+|||++.     ++.+||+|||+
T Consensus        80 me~~-~~~l~~~~~~~---~~~~~~~~~~~i~~q~~~~l~~lH~~---giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~  152 (293)
T d1csna_          80 IDLL-GPSLEDLLDLC---GRKFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANMIYVVDFGM  152 (293)
T ss_dssp             EECC-CCBHHHHHHHT---TTCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTTCEEECCCTT
T ss_pred             EEEC-CCCHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHHHHHC---CCEECCCCCCCEEECCCCCCCCCCEEECCCCE
T ss_conf             9964-88879999752---03110689999999999999999977---96626677131523475434479568723660


Q ss_pred             CCCCCCCCC--------CEEECCCCEEEECCCCCC
Q ss_conf             765569984--------201156234992110233
Q 005587          661 APLISSGSV--------SQVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       661 a~~~~~~~~--------~~~~~~~~~~~ape~~~~  687 (689)
                      |+.+.....        .....+|..|+|||++.+
T Consensus       153 a~~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~~~  187 (293)
T d1csna_         153 VKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLG  187 (293)
T ss_dssp             CEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTT
T ss_pred             EEECCCCCCCCCEEECCCCCEEECHHHCCHHHHCC
T ss_conf             57714676654111024676277510267989648

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.1e-36  Score=205.52  Aligned_cols=168  Identities=18%  Similarity=0.202  Sum_probs=135.0

Q ss_pred             CCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEC-EEEEECCEEEEEE
Q ss_conf             5977444471028738999993-8996999999335458856699999999998138998720001-7999599699998
Q 005587          509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELK-GYCAEHGQRLLIY  586 (689)
Q Consensus       509 ~~f~~~~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~-~~~~~~~~~~lV~  586 (689)
                      +.|++.+.||+|+||.||+|+. .+|+.||||.+.....    ..++..|+++++.++|+|+|..+ .+....+..++||
T Consensus         7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~----~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivm   82 (299)
T d1ckia_           7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK----HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM   82 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTT----SCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEE
T ss_pred             CEEEEEEEEEECCCCEEEEEEECCCCCEEEEEEECHHCC----CHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEE
T ss_conf             889996898507880999999988998999999721005----8889999999997038996017999995198778999


Q ss_pred             ECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECC---CCCEEEEEECCCCC
Q ss_conf             136889988998319545789999999999999999999999499998198044689858669---99499986147765
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDD---DLAVSVSDCGLAPL  663 (689)
Q Consensus       587 Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~---~~~~ki~DFGla~~  663 (689)
                      ||+ +|++.+.+...   ...+++..+..++.|++.||+|||+.   +|+||||||+|||++.   +..+|++|||+|+.
T Consensus        83 e~~-~~~l~~~~~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~---~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~  155 (299)
T d1ckia_          83 ELL-GPSLEDLFNFC---SRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKK  155 (299)
T ss_dssp             ECC-CCBHHHHHHHT---TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEECCCSSCEE
T ss_pred             EEC-CCCHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCCCHHHCCCCCCCCCCEEEEECCCCCEE
T ss_conf             873-87133324430---68876899999999999999999979---944266787660643357776156504675134


Q ss_pred             CCCCCCC--------EEECCCCEEEECCCCCC
Q ss_conf             5699842--------01156234992110233
Q 005587          664 ISSGSVS--------QVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       664 ~~~~~~~--------~~~~~~~~~~ape~~~~  687 (689)
                      +......        ....++..|+|||++.+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  187 (299)
T d1ckia_         156 YRDARTHQHIPYRENKNLTGTARYASINTHLG  187 (299)
T ss_dssp             CBCTTTCCBCCCCBCCSCCCCSSSCCHHHHTT
T ss_pred             CCCCCCCCCEECCCCCCCCCCCCCCCHHHHHC
T ss_conf             25544554100013577678735329999918

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.7e-32  Score=181.29  Aligned_cols=169  Identities=14%  Similarity=0.142  Sum_probs=128.8

Q ss_pred             CCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC-----------CCCCCEECEEEE
Q ss_conf             977444471028738999993-89969999993354588566999999999981389-----------987200017999
Q 005587          510 SFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR-----------HANIVELKGYCA  577 (689)
Q Consensus       510 ~f~~~~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~-----------Hpniv~l~~~~~  577 (689)
                      +|.+.++||+|+||+||+|+. .+|+.||||++....   ...+.+.+|+.+++.++           |+|||++++++.
T Consensus        14 rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~---~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~   90 (362)
T d1q8ya_          14 RYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK---VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN   90 (362)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH---HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred             CEEEEEEEEECCCEEEEEEEECCCCCEEEEEEEECCC---CCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEEEEEE
T ss_conf             5799899750778189999999999799999983431---3368999999999984014555554227676478998763


Q ss_pred             E--CCEEEEEEECCCCCCHHH-HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCC---
Q ss_conf             5--996999981368899889-9831954578999999999999999999999949999819804468985866999---
Q 005587          578 E--HGQRLLIYEYCSNGTLQD-MLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDL---  651 (689)
Q Consensus       578 ~--~~~~~lV~Ey~~~GsL~~-~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~---  651 (689)
                      .  ....+++++++..+.... .....  ....+++..+..++.|++.||.|||+.  .+|+||||||+|||++.++   
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~i~~qil~al~~lh~~--~~IvHrDlKp~NIll~~~~~~~  166 (362)
T d1q8ya_          91 HKGPNGVHVVMVFEVLGENLLALIKKY--EHRGIPLIYVKQISKQLLLGLDYMHRR--CGIIHTDIKPENVLMEIVDSPE  166 (362)
T ss_dssp             EEETTEEEEEEEECCCCEEHHHHHHHT--TTSCCCHHHHHHHHHHHHHHHHHHHHT--TCEECSCCSGGGEEEEEEETTT
T ss_pred             ECCCCCEEEEEEECCCCCCCCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHH--CCCCCCCCCHHHEEEECCCCCC
T ss_conf             125652023432000354200000122--346786899999999999998887640--5864656770570563057656


Q ss_pred             ---CEEEEEECCCCCCCCCCCCEEECCCCEEEECCCCCC
Q ss_conf             ---499986147765569984201156234992110233
Q 005587          652 ---AVSVSDCGLAPLISSGSVSQVSHNLTIMRAGGVTHR  687 (689)
Q Consensus       652 ---~~ki~DFGla~~~~~~~~~~~~~~~~~~~ape~~~~  687 (689)
                         .++++|||.|.......  ....++..|+|||++..
T Consensus       167 ~~~~~kl~dfg~s~~~~~~~--~~~~gt~~y~aPE~~~~  203 (362)
T d1q8ya_         167 NLIQIKIADLGNACWYDEHY--TNSIQTREYRSPEVLLG  203 (362)
T ss_dssp             TEEEEEECCCTTCEETTBCC--CSCCSCGGGCCHHHHHT
T ss_pred             CCCEEEEEECCCCCCCCCCC--CCCCCCCCCCCHHHCCC
T ss_conf             44305675314421234454--22366521057132146

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.4e-27  Score=156.65  Aligned_cols=174  Identities=24%  Similarity=0.239  Sum_probs=147.1

Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             9867999149988764573556999997998317868997788632-354530035755789999656799976699846
Q 005587           79 SDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP-VTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLN  157 (689)
Q Consensus        79 ~~v~~l~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~l~g~ip~~~~-~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls  157 (689)
                      .+++.|+|++|.+.+..+..|.++++|+.|+|++|+++ .+|.... ++|+.|+|++|++++ ++..+..+++|+.|+++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVS  108 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECC
T ss_pred             CCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCC
T ss_conf             68898988499289859778634565522135665444-43111112232111112222211-11121222222222222


Q ss_pred             CCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCC-CCCCCCCCCCCCCCC
Q ss_conf             886787787111299999789832787877789875477665556611444555532-137743-352125565478997
Q 005587          158 NNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLD-VLQDLP-LRDLNIENNLFSGPI  235 (689)
Q Consensus       158 ~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~~~-~~~~~~-L~~L~ls~N~l~g~~  235 (689)
                      +|.+....+..+..+.++..|++++|.+....+..+..+++|+.+++++|++++.++ .+..++ |+.|+|++|+|+ .+
T Consensus       109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~l  187 (266)
T d1p9ag_         109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI  187 (266)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CC
T ss_conf             23110110011222211112212434210221233322111000000015652237200134212423430139785-56


Q ss_pred             CCCCCCCC---CCCCCCCCCCCC
Q ss_conf             61158988---732368867888
Q 005587          236 PEKMLQIP---NFRKDGNPFNST  255 (689)
Q Consensus       236 P~~l~~l~---~l~~~~n~~~~~  255 (689)
                      |..+.+++   .+.+.+|+|.|.
T Consensus       188 p~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         188 PKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             CTTTTTTCCCSEEECCSCCBCCS
T ss_pred             CHHHCCCCCCCEEEECCCCCCCC
T ss_conf             86677788899998369998788

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=2.2e-28  Score=162.10  Aligned_cols=178  Identities=25%  Similarity=0.476  Sum_probs=142.9

Q ss_pred             CCEEEEEECC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             9867999149-988764573556999997998317868997788632--3545300357557899996567999766998
Q 005587           79 SDIIAIILNG-ANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPSSLATLTLLTDMS  155 (689)
Q Consensus        79 ~~v~~l~L~~-~~l~g~lp~~l~~L~~L~~L~Ls~N~l~g~ip~~~~--~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~  155 (689)
                      .++++|+|++ |.+.|.+|+.+++|++|++|+|++|++.+..+..+.  ..|+.++++.|.+.+.+|..+.+++.|+.++
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~  155 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHCCCCCCCEEE
T ss_conf             53352020265433300243114542001102035643443322222011100111122455556851220674000000


Q ss_pred             CCCCCCCCCCCHHHCCCCCC-CEEECCCCCCCCCCCCC-----------------------CCCCCCCCEEECCCCCCCC
Q ss_conf             46886787787111299999-78983278787778987-----------------------5477665556611444555
Q 005587          156 LNNNLLSGEIPDAFQSLTGL-INLDLSSNNLSGELPPS-----------------------LENLSQLTTLHLQNNQLSG  211 (689)
Q Consensus       156 Ls~N~l~g~~P~~l~~l~~L-~~L~Ls~N~l~g~ip~~-----------------------~~~l~~L~~L~Ls~N~l~g  211 (689)
                      +++|.+.+.+|..+..+..+ +.++++.|++++..|..                       +..+.+|+.+++++|.+.+
T Consensus       156 l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~  235 (313)
T d1ogqa_         156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF  235 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             23553356203121443112323102246435332433222222233333343322222222222221112222222222


Q ss_pred             CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCC
Q ss_conf             532137743-352125565478997611589887---323688678888
Q 005587          212 TLDVLQDLP-LRDLNIENNLFSGPIPEKMLQIPN---FRKDGNPFNSTV  256 (689)
Q Consensus       212 ~~~~~~~~~-L~~L~ls~N~l~g~~P~~l~~l~~---l~~~~n~~~~~~  256 (689)
                      .++.+..++ ++.|++++|+++|.+|..+.++++   |++.+|.+.+.+
T Consensus       236 ~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~i  284 (313)
T d1ogqa_         236 DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI  284 (313)
T ss_dssp             BGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             CCCCCCCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCC
T ss_conf             2222224554444447657066608768847999998979588351668

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.95  E-value=1.2e-27  Score=158.30  Aligned_cols=137  Identities=11%  Similarity=0.088  Sum_probs=104.6

Q ss_pred             CCCCEEEECCCEEEEEEEECCCCEEEEEEECCCCCC----------------HHHHHHHHHHHHHHHCCCCCCCCEECEE
Q ss_conf             744447102873899999389969999993354588----------------5669999999999813899872000179
Q 005587          512 SQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASS----------------QQKDDEFLELVNNIDRIRHANIVELKGY  575 (689)
Q Consensus       512 ~~~~~lG~G~~g~Vy~~~~~~g~~vAVK~i~~~~~~----------------~~~~~~~~~e~~~l~~l~Hpniv~l~~~  575 (689)
                      .+.+.||+|+||+||+|+..+|+.||||.++.....                ......+.+|...+.++.|.+++..+++
T Consensus         3 ~vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~   82 (191)
T d1zara2           3 AIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAW   82 (191)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEE
T ss_pred             HHCCEEEECCCEEEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf             22778024856599999979999999999860443466655656300088899999977899999998169991449986


Q ss_pred             EEECCEEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEE
Q ss_conf             99599699998136889988998319545789999999999999999999999499998198044689858669994999
Q 005587          576 CAEHGQRLLIYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSV  655 (689)
Q Consensus       576 ~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki  655 (689)
                      .  .  .+++|||++++.+.+           +++.....++.|+++++.|||..   +|+||||||+|||++++ .+++
T Consensus        83 ~--~--~~lvme~~~~~~~~~-----------l~~~~~~~i~~ql~~~l~~lH~~---giiHrDiKP~NILv~~~-~~~l  143 (191)
T d1zara2          83 E--G--NAVLMELIDAKELYR-----------VRVENPDEVLDMILEEVAKFYHR---GIVHGDLSQYNVLVSEE-GIWI  143 (191)
T ss_dssp             E--T--TEEEEECCCCEEGGG-----------CCCSCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEETT-EEEE
T ss_pred             C--C--CEEEEEEECCCCCCC-----------HHHHHHHHHHHHHHHHHHHHHHC---CEEECCCCHHHEEEECC-CEEE
T ss_conf             2--8--889999504565420-----------01578999999999999998268---88983689036114289-8999


Q ss_pred             EEECCCCCCCCC
Q ss_conf             861477655699
Q 005587          656 SDCGLAPLISSG  667 (689)
Q Consensus       656 ~DFGla~~~~~~  667 (689)
                      +|||+|+.....
T Consensus       144 iDFG~a~~~~~~  155 (191)
T d1zara2         144 IDFPQSVEVGEE  155 (191)
T ss_dssp             CCCTTCEETTST
T ss_pred             EECCCCCCCCCC
T ss_conf             877884308998

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=3.8e-26  Score=150.41  Aligned_cols=179  Identities=20%  Similarity=0.276  Sum_probs=144.5

Q ss_pred             CCCCCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC-CC--CCCCCCCCCCCCCCCC
Q ss_conf             99999998627930998679991499887645735569999979983178689977886-32--3545300357557899
Q 005587           64 GDPCGESWQGVQCNASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSI-LP--VTMQNFFLSDNQFSGS  140 (689)
Q Consensus        64 ~~~C~~~w~gv~C~~~~v~~l~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~l~g~ip~~-~~--~~L~~L~Ls~N~l~g~  140 (689)
                      +..|.|+|..|.|+..          ++. .+|..+.  +.+++|+|++|+|++.++.. +.  .+|+.|+|++|.+...
T Consensus         3 P~~C~C~~~~v~Cs~~----------~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~   69 (192)
T d1w8aa_           3 PAMCHCEGTTVDCTGR----------GLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI   69 (192)
T ss_dssp             CTTSEEETTEEECTTS----------CCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB
T ss_pred             CCCCEECCCEEEEECC----------CCC-CCCCCCC--CCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC
T ss_conf             9998976999997089----------967-0298989--78788984898775530200257876272130136322121


Q ss_pred             CCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf             99656799976699846886787787111299999789832787877789875477665556611444555532137743
Q 005587          141 IPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP  220 (689)
Q Consensus       141 ~p~~l~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~  220 (689)
                      .+..|..+++|+.|+|++|++....|..|.++++|+.|+|++|+|++..+..|..+++|++|+|++|.+....+......
T Consensus        70 ~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~  149 (192)
T d1w8aa_          70 EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE  149 (192)
T ss_dssp             CTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH
T ss_pred             CCCCCCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             21222112222101003553443497998079746552457745353597785687533420003644343530277764


Q ss_pred             -CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             -35212556547899761158988732368867888
Q 005587          221 -LRDLNIENNLFSGPIPEKMLQIPNFRKDGNPFNST  255 (689)
Q Consensus       221 -L~~L~ls~N~l~g~~P~~l~~l~~l~~~~n~~~~~  255 (689)
                       +..+.+..|.+....|..+..+.-+++..|.+.|.
T Consensus       150 ~l~~~~l~~~~~~c~~p~~l~~~~l~~L~~n~l~C~  185 (192)
T d1w8aa_         150 WLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCS  185 (192)
T ss_dssp             HHHHHCCSGGGCBBCSSTTTTTSBGGGSCTTTCCCC
T ss_pred             HHHHHCCCCCCEEECCCHHHCCCEEEECCHHHCCCC
T ss_conf             235403568982768984336988614487557589

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.6e-25  Score=146.02  Aligned_cols=184  Identities=19%  Similarity=0.255  Sum_probs=147.3

Q ss_pred             CCCCEEEEC-----------CCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCC-CCC
Q ss_conf             986279309-----------9867999149988764573556999997998317868997788632--35453003-575
Q 005587           70 SWQGVQCNA-----------SDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFL-SDN  135 (689)
Q Consensus        70 ~w~gv~C~~-----------~~v~~l~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~l~g~ip~~~~--~~L~~L~L-s~N  135 (689)
                      .|.-|.|+.           ..++.|+|++|.+....+..+.+++.|++|++++|.+....+..+.  ..+..++. ..|
T Consensus        12 ~~~~v~c~~~~L~~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          12 PKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             SSCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             CCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99699847999894497889998889774881798797786414213000013445433211121222222222222102


Q ss_pred             CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-
Q ss_conf             5789999656799976699846886787787111299999789832787877789875477665556611444555532-
Q 005587          136 QFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLD-  214 (689)
Q Consensus       136 ~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~~~-  214 (689)
                      .++...+..|.++++|+.|++++|.+....+..+..+..|+.+++++|++++..+..|..+.+|+.|++++|.+++.++ 
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~  171 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER  171 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             CCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCHHCCCCHHHHCCCCCCCCCHHHHCCCCCHHHCCCCCCCCCCCCHH
T ss_conf             23544620101010277875688544320135332000121102001431445805740434050223141765662566


Q ss_pred             CCCCCC-CCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCC
Q ss_conf             137743-352125565478997611589887---323688678
Q 005587          215 VLQDLP-LRDLNIENNLFSGPIPEKMLQIPN---FRKDGNPFN  253 (689)
Q Consensus       215 ~~~~~~-L~~L~ls~N~l~g~~P~~l~~l~~---l~~~~n~~~  253 (689)
                      .+..++ |+.+++++|++++..|..|..+++   +++.+|.+.
T Consensus       172 ~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~  214 (284)
T d1ozna_         172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS  214 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             HHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCC
T ss_conf             6546563413142114346628167665320002333335221

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=6e-24  Score=138.92  Aligned_cols=175  Identities=18%  Similarity=0.325  Sum_probs=92.8

Q ss_pred             CCCCCCCCCCCEEEEC-----------CCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCC
Q ss_conf             9999999986279309-----------9867999149988764573556999997998317868997788632--35453
Q 005587           63 AGDPCGESWQGVQCNA-----------SDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQN  129 (689)
Q Consensus        63 ~~~~C~~~w~gv~C~~-----------~~v~~l~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~l~g~ip~~~~--~~L~~  129 (689)
                      .+-.|.|.|.+|.|+.           ..++.|+|++|.+....+..|.+++.|+.|++++|.+....|..+.  ..|+.
T Consensus         4 ~p~~c~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~   83 (305)
T d1xkua_           4 CPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER   83 (305)
T ss_dssp             CCTTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred             CCCCCEECCCEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCE
T ss_conf             99988955999985599988519888999798978499189869657604656523112344344523566527985578


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCC--CCCCCCCCCCCCCCEEECCCC
Q ss_conf             003575578999965679997669984688678778711129999978983278787--778987547766555661144
Q 005587          130 FFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLS--GELPPSLENLSQLTTLHLQNN  207 (689)
Q Consensus       130 L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~--g~ip~~~~~l~~L~~L~Ls~N  207 (689)
                      |++++|+++ .+|..+  ...+..|++++|.+.+..+..+.....+..++...|...  ...+..+..+++|+.+++++|
T Consensus        84 L~l~~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n  160 (305)
T d1xkua_          84 LYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT  160 (305)
T ss_dssp             EECCSSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred             ECCCCCCCC-CCCCCH--HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             315687567-676400--11132321024610234444540133110000123333346777642234565671203467


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             4555532137743352125565478997611589
Q 005587          208 QLSGTLDVLQDLPLRDLNIENNLFSGPIPEKMLQ  241 (689)
Q Consensus       208 ~l~g~~~~~~~~~L~~L~ls~N~l~g~~P~~l~~  241 (689)
                      .++.....+ ...++.|++++|..++..+..+..
T Consensus       161 ~l~~l~~~~-~~~L~~L~l~~n~~~~~~~~~~~~  193 (305)
T d1xkua_         161 NITTIPQGL-PPSLTELHLDGNKITKVDAASLKG  193 (305)
T ss_dssp             CCCSCCSSC-CTTCSEEECTTSCCCEECTGGGTT
T ss_pred             CCCCCCCCC-CCCCCEEECCCCCCCCCCHHHHHC
T ss_conf             745167101-776678989788677888267641

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=8.1e-22  Score=127.78  Aligned_cols=169  Identities=22%  Similarity=0.260  Sum_probs=137.7

Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             9867999149988764573556999997998317868997788632--35453003575578999965679997669984
Q 005587           79 SDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPSSLATLTLLTDMSL  156 (689)
Q Consensus        79 ~~v~~l~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~l~g~ip~~~~--~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L  156 (689)
                      .+...++.++++++ .+|+.+.  +.|++|+|++|.+++..+..+.  .+|++|+|++|+++ .++ .++.+++|+.|+|
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDL   84 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEEC
T ss_pred             CCCEEEECCCCCCC-EECCCCC--CCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC-CCC-CCCCCCCCCCCCC
T ss_conf             89869980699988-6196757--68898988499289859778634565522135665444-431-1111223211111


Q ss_pred             CCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCC-CCCCCCCCCCCCCC
Q ss_conf             68867877871112999997898327878777898754776655566114445555321-37743-35212556547899
Q 005587          157 NNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDV-LQDLP-LRDLNIENNLFSGP  234 (689)
Q Consensus       157 s~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~~~~-~~~~~-L~~L~ls~N~l~g~  234 (689)
                      ++|.++ .++..+..+++|+.|++++|.+....+..+..+.++..|++++|.++...+. +..++ ++.+++++|++++.
T Consensus        85 s~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~  163 (266)
T d1p9ag_          85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (266)
T ss_dssp             CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             CCCCCC-CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHCCCCCCCCCCC
T ss_conf             222221-1111212222222222222311011001122221111221243421022123332211100000001565223


Q ss_pred             CCCCCCCCC---CCCCCCCCCC
Q ss_conf             761158988---7323688678
Q 005587          235 IPEKMLQIP---NFRKDGNPFN  253 (689)
Q Consensus       235 ~P~~l~~l~---~l~~~~n~~~  253 (689)
                      .+..|..++   .|++.+|.+.
T Consensus       164 ~~~~~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         164 PAGLLNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCCCCCCCEEECCCCCCC
T ss_conf             7200134212423430139785

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.3e-22  Score=131.90  Aligned_cols=179  Identities=21%  Similarity=0.240  Sum_probs=116.7

Q ss_pred             CCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             62793099867999149988764573556999997998317868997788632--3545300357557899996567999
Q 005587           72 QGVQCNASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPSSLATLT  149 (689)
Q Consensus        72 ~gv~C~~~~v~~l~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~l~g~ip~~~~--~~L~~L~Ls~N~l~g~~p~~l~~l~  149 (689)
                      .+..|....-..++.++.++. .+|..+.  +.++.|+|++|+++...+..+.  .+|++|++++|.+....+..+..++
T Consensus         4 ~~C~C~~~~~~~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~   80 (284)
T d1ozna_           4 GACVCYNEPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA   80 (284)
T ss_dssp             TTCEEECSSSCEEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             CCCEECCCCCEEEECCCCCCC-CCCCCCC--CCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             988986999969984799989-4497889--9988897748817987977864142130000134454332111212222


Q ss_pred             CCCEEECC-CCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCC-CCCCCC
Q ss_conf             76699846-886787787111299999789832787877789875477665556611444555532-137743-352125
Q 005587          150 LLTDMSLN-NNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLD-VLQDLP-LRDLNI  226 (689)
Q Consensus       150 ~L~~L~Ls-~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~~~-~~~~~~-L~~L~l  226 (689)
                      .+..++.. .|.+....|..|.++++|+.|++++|.+....+..+..+.+|+.+++++|.+++.++ .+...+ |+.|++
T Consensus        81 ~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l  160 (284)
T d1ozna_          81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL  160 (284)
T ss_dssp             TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCHHCCCCHHHHCCCCCCCCCHHHHCCCCCHHHCCC
T ss_conf             22222222102235446201010102778756885443201353320001211020014314458057404340502231


Q ss_pred             CCCCCCCCCCCCCCCCCCCC---CCCCCCC
Q ss_conf             56547899761158988732---3688678
Q 005587          227 ENNLFSGPIPEKMLQIPNFR---KDGNPFN  253 (689)
Q Consensus       227 s~N~l~g~~P~~l~~l~~l~---~~~n~~~  253 (689)
                      ++|++++..+..|..+++|.   +.+|.+.
T Consensus       161 ~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~  190 (284)
T d1ozna_         161 HGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (284)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCCCCHHHHCCCCCCCHHHHHHCCCC
T ss_conf             417656625666546563413142114346

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.86  E-value=3.1e-21  Score=124.74  Aligned_cols=131  Identities=26%  Similarity=0.397  Sum_probs=116.2

Q ss_pred             CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCC
Q ss_conf             9799831786899778863235453003575578999-965679997669984688678778711129999978983278
Q 005587          105 IRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSI-PSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSN  183 (689)
Q Consensus       105 L~~L~Ls~N~l~g~ip~~~~~~L~~L~Ls~N~l~g~~-p~~l~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N  183 (689)
                      .+.+++++|+|+ .+|..++.++++|+|++|++++.+ +..|..+++|+.|+|++|.+....+..|..+++|+.|+|++|
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CCEEEEECCCCC-CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCC
T ss_conf             999997089967-0298989787889848987755302002578762721301363221212122211222210100355


Q ss_pred             CCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCC-CCCCCCCCCCCCCCCC
Q ss_conf             7877789875477665556611444555532-137743-3521255654789976
Q 005587          184 NLSGELPPSLENLSQLTTLHLQNNQLSGTLD-VLQDLP-LRDLNIENNLFSGPIP  236 (689)
Q Consensus       184 ~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~~~-~~~~~~-L~~L~ls~N~l~g~~P  236 (689)
                      +++...|..|.++++|+.|+|++|+|++..+ .|..++ |+.|++++|.+.....
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~  143 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf             3443497998079746552457745353597785687533420003644343530

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.83  E-value=8.5e-20  Score=117.20  Aligned_cols=81  Identities=21%  Similarity=0.390  Sum_probs=62.2

Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             99867999149988764573556999997998317868997788632--3545300357557899996567999766998
Q 005587           78 ASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPSSLATLTLLTDMS  155 (689)
Q Consensus        78 ~~~v~~l~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~l~g~ip~~~~--~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~  155 (689)
                      ..+++.|++.++++.. + +.+..|++|++|+|++|++++..|  +.  .+|++|++++|.+.+. + .++.+++|+.|+
T Consensus        43 l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i-~-~l~~l~~L~~L~  116 (384)
T d2omza2          43 LDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLT  116 (384)
T ss_dssp             HTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEE
T ss_pred             HCCCCEEECCCCCCCC-C-CCCCCCCCCCEEECCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCC-C-CCCCCCCCCCCC
T ss_conf             5787899899989877-6-242458999989681881798863--34771101030134333222-2-111233433344


Q ss_pred             CCCCCCCCC
Q ss_conf             468867877
Q 005587          156 LNNNLLSGE  164 (689)
Q Consensus       156 Ls~N~l~g~  164 (689)
                      +++|.+++.
T Consensus       117 ~~~~~~~~~  125 (384)
T d2omza2         117 LFNNQITDI  125 (384)
T ss_dssp             CCSSCCCCC
T ss_pred             CCCCCCCCC
T ss_conf             332222222

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.82  E-value=2.4e-19  Score=114.86  Aligned_cols=174  Identities=20%  Similarity=0.290  Sum_probs=102.0

Q ss_pred             CCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             862793099867999149988764573556999997998317868997788632--354530035755789999656799
Q 005587           71 WQGVQCNASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPSSLATL  148 (689)
Q Consensus        71 w~gv~C~~~~v~~l~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~l~g~ip~~~~--~~L~~L~Ls~N~l~g~~p~~l~~l  148 (689)
                      -.+..|..   ..++-+++++. .+|..+.  +.|++|+|++|+++...+..+.  .+|++|++++|.+....|..|..+
T Consensus         5 p~~c~c~~---~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l   78 (305)
T d1xkua_           5 PFRCQCHL---RVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL   78 (305)
T ss_dssp             CTTCEEET---TEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred             CCCCEECC---CEEEECCCCCC-CCCCCCC--CCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCC
T ss_conf             99889559---99985599988-5198889--997989784991898696576046565231123443445235665279


Q ss_pred             CCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC---CCCCCCC-CCCC
Q ss_conf             97669984688678778711129999978983278787778987547766555661144455553---2137743-3521
Q 005587          149 TLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTL---DVLQDLP-LRDL  224 (689)
Q Consensus       149 ~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~~---~~~~~~~-L~~L  224 (689)
                      +.|+.|++++|+++ .+|..+  ...+..|+++.|.+.+..+..+.....+..++...|......   ..+..++ |+.+
T Consensus        79 ~~L~~L~l~~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l  155 (305)
T d1xkua_          79 VKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI  155 (305)
T ss_dssp             TTCCEEECCSSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred             CCCCEECCCCCCCC-CCCCCH--HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             85578315687567-676400--111323210246102344445401331100001233333467776422345656712


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             25565478997611589887323688678
Q 005587          225 NIENNLFSGPIPEKMLQIPNFRKDGNPFN  253 (689)
Q Consensus       225 ~ls~N~l~g~~P~~l~~l~~l~~~~n~~~  253 (689)
                      ++++|.++......+.++..+.+.+|...
T Consensus       156 ~l~~n~l~~l~~~~~~~L~~L~l~~n~~~  184 (305)
T d1xkua_         156 RIADTNITTIPQGLPPSLTELHLDGNKIT  184 (305)
T ss_dssp             ECCSSCCCSCCSSCCTTCSEEECTTSCCC
T ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCCCCC
T ss_conf             03467745167101776678989788677

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=6e-19  Score=112.76  Aligned_cols=158  Identities=25%  Similarity=0.376  Sum_probs=126.5

Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             98679991499887645735569999979983178689977886323545300357557899996567999766998468
Q 005587           79 SDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNN  158 (689)
Q Consensus        79 ~~v~~l~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~l~g~ip~~~~~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~  158 (689)
                      ..++.|++.++.+....  .+..+++|+.|+|++|++++..+-..-.+|+.|++++|++++ ++ .+..+++|+.|++++
T Consensus        46 ~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~  121 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEH  121 (210)
T ss_dssp             HTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTT
T ss_pred             CCCCEEECCCCCCCCCH--HHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CC-CCCCCCCCCCCCCCC
T ss_conf             48458978279888744--476489989876989602586011358621201433333212-22-121222111223456


Q ss_pred             CCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCC
Q ss_conf             86787787111299999789832787877789875477665556611444555532137743-35212556547899761
Q 005587          159 NLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP-LRDLNIENNLFSGPIPE  237 (689)
Q Consensus       159 N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~-L~~L~ls~N~l~g~~P~  237 (689)
                      |.+. .+ ..+..++.++.++++.|.+++  +..+..+++|+.+++++|++++..+ +..++ |+.|++++|+++ .+| 
T Consensus       122 ~~~~-~~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~-~l~-  194 (210)
T d1h6ta2         122 NGIS-DI-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS-DLR-  194 (210)
T ss_dssp             SCCC-CC-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-BCG-
T ss_pred             CCCC-CC-CCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCEEECCCCCCC-CCH-
T ss_conf             5322-11-220111112221122233345--4310001332100134643025645-367898999989799899-872-


Q ss_pred             CCCCCCCCCC
Q ss_conf             1589887323
Q 005587          238 KMLQIPNFRK  247 (689)
Q Consensus       238 ~l~~l~~l~~  247 (689)
                      .+..+++|+.
T Consensus       195 ~l~~l~~L~~  204 (210)
T d1h6ta2         195 ALAGLKNLDV  204 (210)
T ss_dssp             GGTTCTTCSE
T ss_pred             HHCCCCCCCE
T ss_conf             1169999899

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.9e-19  Score=113.77  Aligned_cols=188  Identities=14%  Similarity=0.103  Sum_probs=117.1

Q ss_pred             CCCCCCCCEEEEC-----------CCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC-CC--CCCCCCC
Q ss_conf             9999986279309-----------98679991499887645735569999979983178689977886-32--3545300
Q 005587           66 PCGESWQGVQCNA-----------SDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSI-LP--VTMQNFF  131 (689)
Q Consensus        66 ~C~~~w~gv~C~~-----------~~v~~l~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~l~g~ip~~-~~--~~L~~L~  131 (689)
                      .|.|++..|.|..           .++++|+|++|.+....+..|.++++|++|+|++|.+...++.. +.  ..++++.
T Consensus         5 ~C~C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~   84 (242)
T d1xwdc1           5 ICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR   84 (242)
T ss_dssp             SEEECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEE
T ss_pred             CCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCHHHHHHHCCCCCCCEEECCCCCCCCCCCCCC
T ss_conf             28873999998189988768888998899987699189649668614643232110221124201001122222222211


Q ss_pred             CC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCH-HHCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCC
Q ss_conf             35-7557899996567999766998468867877871-112999997898327878777898754776-65556611444
Q 005587          132 LS-DNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPD-AFQSLTGLINLDLSSNNLSGELPPSLENLS-QLTTLHLQNNQ  208 (689)
Q Consensus       132 Ls-~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~P~-~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-~L~~L~Ls~N~  208 (689)
                      +. .|++....+..|.++++|+.|++++|.+....+. .+..+..+..+..+++.+...-+..|..+. .+..|++++|+
T Consensus        85 ~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~  164 (242)
T d1xwdc1          85 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG  164 (242)
T ss_dssp             EECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
T ss_conf             11123432222221222222222234211112554333222111122222221211122222222223310012200123


Q ss_pred             CCCCCCC-CCCCCCC-CCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCC
Q ss_conf             5555321-3774335-212556547899761158988---7323688678
Q 005587          209 LSGTLDV-LQDLPLR-DLNIENNLFSGPIPEKMLQIP---NFRKDGNPFN  253 (689)
Q Consensus       209 l~g~~~~-~~~~~L~-~L~ls~N~l~g~~P~~l~~l~---~l~~~~n~~~  253 (689)
                      ++..... +....+. .+++++|+++...+..|..++   .|++.+|.+.
T Consensus       165 l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         165 IQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             CCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             CCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCC
T ss_conf             33322222220111012123543246424788668999998989799289

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=9.1e-19  Score=111.83  Aligned_cols=60  Identities=18%  Similarity=0.230  Sum_probs=33.7

Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99867999149988764573556999997998317868997788632354530035755789
Q 005587           78 ASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSG  139 (689)
Q Consensus        78 ~~~v~~l~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~l~g~ip~~~~~~L~~L~Ls~N~l~g  139 (689)
                      ..+++.|+|++|.+.+..  .++++++|++|++++|.+.+..+-..-.+|+.|++++|.+++
T Consensus        65 L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~~~~~~~~~  124 (384)
T d2omza2          65 LNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD  124 (384)
T ss_dssp             CTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred             CCCCCEEECCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             899998968188179886--334771101030134333222211123343334433222222

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=1.9e-18  Score=110.14  Aligned_cols=155  Identities=28%  Similarity=0.482  Sum_probs=125.5

Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             9867999149988764573556999997998317868997788632--35453003575578999965679997669984
Q 005587           79 SDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPSSLATLTLLTDMSL  156 (689)
Q Consensus        79 ~~v~~l~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~l~g~ip~~~~--~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L  156 (689)
                      .+++.|++.++++.. + +.+..+++|++|+|++|++++..|  +.  ++|+.|++++|.+.. ++ .+..++.|+.|++
T Consensus        40 ~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l  113 (199)
T d2omxa2          40 DQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTL  113 (199)
T ss_dssp             TTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEEC
T ss_pred             CCCCEEECCCCCCCC-C-CCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCC-CC-CCCCCCCCCCCCC
T ss_conf             687899899999977-5-202137886757545655667640--1677522311112222222-21-1111223222111


Q ss_pred             CCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCC
Q ss_conf             6886787787111299999789832787877789875477665556611444555532137743-352125565478997
Q 005587          157 NNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP-LRDLNIENNLFSGPI  235 (689)
Q Consensus       157 s~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~-L~~L~ls~N~l~g~~  235 (689)
                      ++|.+...  ..+..+++|+.|++++|.+. .++ .+..+++|+.|++.+|++++..+ +..++ |+.|++++|++++ +
T Consensus       114 ~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l~~-l~~l~~L~~L~ls~N~i~~-i  187 (199)
T d2omxa2         114 FNNQITDI--DPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKVSD-I  187 (199)
T ss_dssp             CSSCCCCC--GGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-C
T ss_pred             CCCCCCCC--CCCCHHHHHHHHHHHHHHHC-CCC-CCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCEEECCCCCCCC-C
T ss_conf             22222232--10001223677643111100-234-33321111112234555567701-1679989999787997998-8


Q ss_pred             CCCCCCCCCCC
Q ss_conf             61158988732
Q 005587          236 PEKMLQIPNFR  246 (689)
Q Consensus       236 P~~l~~l~~l~  246 (689)
                      + .+..+++|+
T Consensus       188 ~-~l~~L~~L~  197 (199)
T d2omxa2         188 S-VLAKLTNLE  197 (199)
T ss_dssp             G-GGGGCTTCS
T ss_pred             C-CCCCCCCCC
T ss_conf             1-012789989

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=3.4e-17  Score=103.58  Aligned_cols=166  Identities=20%  Similarity=0.298  Sum_probs=96.2

Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             98679991499887645735569999979983178689977886323545300357557899996567999766998468
Q 005587           79 SDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNN  158 (689)
Q Consensus        79 ~~v~~l~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~l~g~ip~~~~~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~  158 (689)
                      .+++.|++.++++.. + +.+..+++|+.|+|++|.+.+..|-....+++++++++|.++. ++ .+..+++|+.+++++
T Consensus        41 ~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~-i~-~l~~l~~L~~l~l~~  116 (227)
T d1h6ua2          41 DGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTS  116 (227)
T ss_dssp             HTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTT
T ss_pred             CCCCEEECCCCCCCC-C-HHHHCCCCCCEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCC-CC-CCCCCCCCCCCCCCC
T ss_conf             886899777999976-6-4574488883763578532025431123343201211122222-22-222222221221222


Q ss_pred             CCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCC-
Q ss_conf             86787787111299999789832787877789875477665556611444555532137743-3521255654789976-
Q 005587          159 NLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP-LRDLNIENNLFSGPIP-  236 (689)
Q Consensus       159 N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~-L~~L~ls~N~l~g~~P-  236 (689)
                      +...+..  .+.....+..+.++.+.+....  .+..+++|+.|++++|.+....+ +..++ |+.|++++|++++..+ 
T Consensus       117 ~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n~l~~l~~l  191 (227)
T d1h6ua2         117 TQITDVT--PLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISPL  191 (227)
T ss_dssp             SCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGG
T ss_pred             CCCCCCC--HHCCCCCHHHHHCHHHHHCHHH--HHCCCCCCCCCCCCCCCCCCCHH-HCCCCCCEECCCCCCCCCCCHHH
T ss_conf             4433110--0000230122200000000000--00102111002333333331001-05646335644588841778534


Q ss_pred             CCCCCCCCCCCCCCCCC
Q ss_conf             11589887323688678
Q 005587          237 EKMLQIPNFRKDGNPFN  253 (689)
Q Consensus       237 ~~l~~l~~l~~~~n~~~  253 (689)
                      ..+.++..|.+.+|.+.
T Consensus       192 ~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         192 ASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             GGCTTCCEEECTTSCCC
T ss_pred             CCCCCCCEEECCCCCCC
T ss_conf             47999998979599689

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=6e-17  Score=102.31  Aligned_cols=141  Identities=26%  Similarity=0.387  Sum_probs=79.7

Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             99867999149988764573556999997998317868997788632-35453003575578999965679997669984
Q 005587           78 ASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP-VTMQNFFLSDNQFSGSIPSSLATLTLLTDMSL  156 (689)
Q Consensus        78 ~~~v~~l~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~l~g~ip~~~~-~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L  156 (689)
                      ..+++.|+|++|.+.+..  .++.+++|+.|++++|++++ +|.... ++|+.|++++|.+.. + ..+..++.|+.+++
T Consensus        67 l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~~l~~l~~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~~  141 (210)
T d1h6ta2          67 LPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LSSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYL  141 (210)
T ss_dssp             CTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GGGGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEEC
T ss_pred             CCCCCEEECCCCCCCCCC--CCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCC-C-CCCCCCCCCCCCCC
T ss_conf             899898769896025860--11358621201433333212-2212122211122345653221-1-22011111222112


Q ss_pred             CCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCCCCC
Q ss_conf             6886787787111299999789832787877789875477665556611444555532137743-35212556
Q 005587          157 NNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP-LRDLNIEN  228 (689)
Q Consensus       157 s~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~-L~~L~ls~  228 (689)
                      ++|.+++  +..+..+++|+.+++++|++++ ++. +.++++|+.|++++|+++.. +.+..++ |+.|++++
T Consensus       142 ~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~~-l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         142 GNNKITD--ITVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFS  209 (210)
T ss_dssp             CSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEEEEE
T ss_pred             CCCCCCC--CCCCCCCCCCCCCCCCCCCCCC-CCC-CCCCCCCCEEECCCCCCCCC-HHHCCCCCCCEEECCC
T ss_conf             2233345--4310001332100134643025-645-36789899998979989987-2116999989997118

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=9.1e-17  Score=101.37  Aligned_cols=157  Identities=25%  Similarity=0.411  Sum_probs=96.3

Q ss_pred             ECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             149988764573556999997998317868997788632--354530035755789999656799976699846886787
Q 005587           86 LNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSG  163 (689)
Q Consensus        86 L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~l~g~ip~~~~--~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g  163 (689)
                      +..+.+.+.++  ...+..|+.|++++|.+.. +++ +.  ++|++|+|++|++++..+  ++.+++|+.|++++|.+. 
T Consensus        25 l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l~~-l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-   97 (199)
T d2omxa2          25 LGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-IDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-   97 (199)
T ss_dssp             TTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-CTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-
T ss_pred             HCCCCCCCCCC--HHHHCCCCEEECCCCCCCC-CCC-CCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCC-
T ss_conf             67787788559--8794687899899999977-520-2137886757545655667640--167752231111222222-


Q ss_pred             CCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCC-CCCCC
Q ss_conf             787111299999789832787877789875477665556611444555532137743-3521255654789976-11589
Q 005587          164 EIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP-LRDLNIENNLFSGPIP-EKMLQ  241 (689)
Q Consensus       164 ~~P~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~-L~~L~ls~N~l~g~~P-~~l~~  241 (689)
                      .++ .+.+++.|+.|++++|.+.. + ..+..+++|+.|++++|.+... +.+..++ ++.|++.+|++++..+ ..+.+
T Consensus        98 ~~~-~l~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~n~l~~~-~~l~~~~~L~~L~l~~n~l~~l~~l~~l~~  173 (199)
T d2omxa2          98 DIT-PLANLTNLTGLTLFNNQITD-I-DPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLNFSSNQVTDLKPLANLTT  173 (199)
T ss_dssp             CCG-GGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCCCCCGGGTTCTT
T ss_pred             CCC-CCCCCCCCCCCCCCCCCCCC-C-CCCCHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             221-11112232221112222223-2-1000122367764311110023-433321111112234555567701167998


Q ss_pred             CCCCCCCCCCCC
Q ss_conf             887323688678
Q 005587          242 IPNFRKDGNPFN  253 (689)
Q Consensus       242 l~~l~~~~n~~~  253 (689)
                      +..|++.+|.+.
T Consensus       174 L~~L~ls~N~i~  185 (199)
T d2omxa2         174 LERLDISSNKVS  185 (199)
T ss_dssp             CCEEECCSSCCC
T ss_pred             CCEEECCCCCCC
T ss_conf             999978799799

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.3e-17  Score=104.54  Aligned_cols=113  Identities=25%  Similarity=0.257  Sum_probs=78.6

Q ss_pred             CCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCC
Q ss_conf             3556999997998317868997788632--35453003575578999965679997669984688678778711129999
Q 005587           97 ENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTG  174 (689)
Q Consensus        97 ~~l~~L~~L~~L~Ls~N~l~g~ip~~~~--~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~  174 (689)
                      +.+.+...|+.|||++|+++ .++..+.  .+|+.|+|++|.++. + +.|..+++|+.|++++|.++...+..+..+++
T Consensus        12 ~~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   88 (162)
T ss_dssp             CEEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             HHCCCCCCCCEEECCCCCCC-CCCCCCCCCCCCCEEECCCCCCCC-C-CCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             75168574848978899788-657620041459989897997876-4-77445761306431021345777632233453


Q ss_pred             CCEEECCCCCCCCCCC--CCCCCCCCCCEEECCCCCCCCCC
Q ss_conf             9789832787877789--87547766555661144455553
Q 005587          175 LINLDLSSNNLSGELP--PSLENLSQLTTLHLQNNQLSGTL  213 (689)
Q Consensus       175 L~~L~Ls~N~l~g~ip--~~~~~l~~L~~L~Ls~N~l~g~~  213 (689)
                      |+.|++++|+++ .++  ..+..+++|+.|++++|.++...
T Consensus        89 L~~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~~~~  128 (162)
T d1a9na_          89 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKK  128 (162)
T ss_dssp             CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred             CCCCEECCCCCC-CCCCCCCCCCCCCCCHHHCCCCCCCCCC
T ss_conf             443420300016-6542110013653206640799634561

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.66  E-value=3.1e-15  Score=93.35  Aligned_cols=140  Identities=26%  Similarity=0.408  Sum_probs=95.3

Q ss_pred             EECCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             30998679991499887645735569999979983178689977886323545300357557899996567999766998
Q 005587           76 CNASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMS  155 (689)
Q Consensus        76 C~~~~v~~l~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~l~g~ip~~~~~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~  155 (689)
                      |...++..|+|++++++ .+|+.   +++|+.|+|++|+|+ .+|..+ .+|+.|++++|+++ .++. +.  +.|++|+
T Consensus        35 c~~~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~-~~L~~L~l~~n~l~-~l~~-lp--~~L~~L~  104 (353)
T d1jl5a_          35 CLDRQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP-QSLKSLLVDNNNLK-ALSD-LP--PLLEYLG  104 (353)
T ss_dssp             HHHHTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC-TTCCEEECCSSCCS-CCCS-CC--TTCCEEE
T ss_pred             HHHCCCCEEEECCCCCC-CCCCC---CCCCCEEECCCCCCC-CCCCCH-HHHHHHHHHHCCCC-HHHH-HC--CCCCCCC
T ss_conf             98769989993799988-78898---789888989999796-336203-32033266551432-0321-02--2111113


Q ss_pred             CCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCCC
Q ss_conf             46886787787111299999789832787877789875477665556611444555532137743-352125565478
Q 005587          156 LNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP-LRDLNIENNLFS  232 (689)
Q Consensus       156 Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~-L~~L~ls~N~l~  232 (689)
                      +++|.+. .+|. ++.++.|+.|++++|.+.. .+...   ..+..+.+.++..... ..+..++ ++.++++.|.+.
T Consensus       105 L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~-~~~~~---~~l~~l~~~~~~~~~~-~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         105 VSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEEL-PELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             CCSSCCS-SCCC-CTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSSC-CCCTTCTTCCEEECCSSCCS
T ss_pred             CCCCCCC-CCCC-HHHHCCCEEECCCCCCCCC-CCCCC---CCCCCHHHCCCCCCCC-CCCCCCCCCEECCCCCCCCC
T ss_conf             3455432-2210-0110131231135651001-32233---3321000012222233-32000122200111233443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=7.7e-16  Score=96.51  Aligned_cols=165  Identities=25%  Similarity=0.366  Sum_probs=129.7

Q ss_pred             CCCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9862793099867999149988764573556999997998317868997788632-354530035755789999656799
Q 005587           70 SWQGVQCNASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP-VTMQNFFLSDNQFSGSIPSSLATL  148 (689)
Q Consensus        70 ~w~gv~C~~~~v~~l~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~l~g~ip~~~~-~~L~~L~Ls~N~l~g~~p~~l~~l  148 (689)
                      +..|+ ....++..|++++|.+.+..+  +..++.|+.+++++|.++ .++.... .+|+.++++++...+.  ..+...
T Consensus        55 ~l~~l-~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i~~l~~l~~L~~l~l~~~~~~~~--~~~~~~  128 (227)
T d1h6ua2          55 TIEGV-QYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVSAIAGLQSIKTLDLTSTQITDV--TPLAGL  128 (227)
T ss_dssp             CCTTG-GGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCGGGTTCTTCCEEECTTSCCCCC--GGGTTC
T ss_pred             CCHHH-HCCCCCCEEECCCCEEECCCC--CCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCC--CHHCCC
T ss_conf             66457-448888376357853202543--112334320121112222-222222222221221222443311--000002


Q ss_pred             CCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf             976699846886787787111299999789832787877789875477665556611444555532137743-3521255
Q 005587          149 TLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLSGTLDVLQDLP-LRDLNIE  227 (689)
Q Consensus       149 ~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~-L~~L~ls  227 (689)
                      +.+..+.++++.+....  .+..+.+|+.|++++|.+... + .+.++++|+.|++++|++++.. .+..++ |+.|+++
T Consensus       129 ~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~Ls~n~l~~l~-~l~~l~~L~~L~Ls  203 (227)
T d1h6ua2         129 SNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL-T-PLANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLK  203 (227)
T ss_dssp             TTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECT
T ss_pred             CCHHHHHCHHHHHCHHH--HHCCCCCCCCCCCCCCCCCCC-H-HHCCCCCCEECCCCCCCCCCCH-HHCCCCCCCEEECC
T ss_conf             30122200000000000--001021110023333333310-0-1056463356445888417785-34479999989795


Q ss_pred             CCCCCCCCCCCCCCCCCCCC
Q ss_conf             65478997611589887323
Q 005587          228 NNLFSGPIPEKMLQIPNFRK  247 (689)
Q Consensus       228 ~N~l~g~~P~~l~~l~~l~~  247 (689)
                      +|++++..|  +.++++|..
T Consensus       204 ~N~lt~i~~--l~~l~~L~~  221 (227)
T d1h6ua2         204 NNQISDVSP--LANTSNLFI  221 (227)
T ss_dssp             TSCCCBCGG--GTTCTTCCE
T ss_pred             CCCCCCCCC--CCCCCCCCE
T ss_conf             996899802--036999898

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=6.9e-16  Score=96.78  Aligned_cols=100  Identities=27%  Similarity=0.396  Sum_probs=54.2

Q ss_pred             CEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCC
Q ss_conf             7998317868997788632--35453003575578999965679997669984688678778711129999978983278
Q 005587          106 RVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSN  183 (689)
Q Consensus       106 ~~L~Ls~N~l~g~ip~~~~--~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N  183 (689)
                      ++|+|++|+++ .++. +.  ..|++|++++|.++ .+|..++.+++|+.|++++|.++. +| .+..+++|+.|++++|
T Consensus         1 R~L~Ls~n~l~-~l~~-l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEECCCCCCC-CCCC-CCCCCCCCEEECCCCCCC-CCHHHHHHHHCCCCCCCCCCCCCC-CC-CCCCCCCCCEEECCCC
T ss_conf             98986899898-8710-105898898979787168-652156554313545324321123-57-4123355576888898


Q ss_pred             CCCCCCC--CCCCCCCCCCEEECCCCCCCC
Q ss_conf             7877789--875477665556611444555
Q 005587          184 NLSGELP--PSLENLSQLTTLHLQNNQLSG  211 (689)
Q Consensus       184 ~l~g~ip--~~~~~l~~L~~L~Ls~N~l~g  211 (689)
                      +++. ++  ..+..+++|+.|++++|.++.
T Consensus        76 ~i~~-~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          76 RLQQ-SAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCCS-SSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CCCC-CCCCHHHCCCCCCCEEECCCCCCCC
T ss_conf             6588-8882565379999999897996886

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=6.3e-16  Score=96.97  Aligned_cols=100  Identities=30%  Similarity=0.426  Sum_probs=58.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf             53003575578999965679997669984688678778711129999978983278787778987547766555661144
Q 005587          128 QNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNN  207 (689)
Q Consensus       128 ~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N  207 (689)
                      +.|+|++|+++ .++ .+..++.|++|++++|.++ .+|..+..+++|+.|++++|.++ .+| .+..+++|+.|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSS
T ss_pred             CEEECCCCCCC-CCC-CCCCCCCCCEEECCCCCCC-CCHHHHHHHHCCCCCCCCCCCCC-CCC-CCCCCCCCCEEECCCC
T ss_conf             98986899898-871-0105898898979787168-65215655431354532432112-357-4123355576888898


Q ss_pred             CCCCCC--CCCCCCC-CCCCCCCCCCCC
Q ss_conf             455553--2137743-352125565478
Q 005587          208 QLSGTL--DVLQDLP-LRDLNIENNLFS  232 (689)
Q Consensus       208 ~l~g~~--~~~~~~~-L~~L~ls~N~l~  232 (689)
                      +++...  ..+..++ |+.+++++|+++
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCCCCCHHHCCCCCCCEEECCCCCCC
T ss_conf             6588888256537999999989799688

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.7e-16  Score=98.16  Aligned_cols=104  Identities=25%  Similarity=0.224  Sum_probs=44.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             54530035755789999656799976699846886787787111299999789832787877789875477665556611
Q 005587          126 TMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQ  205 (689)
Q Consensus       126 ~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls  205 (689)
                      ++++|+|++|+++ .++..+..++.|+.|+|++|.++ .++ .|..+++|+.|++++|+++...+..+..+++|+.|+++
T Consensus        19 ~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          19 RDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   95 (162)
T ss_dssp             SCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             CCCEEECCCCCCC-CCCCCCCCCCCCCEEECCCCCCC-CCC-CCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEC
T ss_conf             4848978899788-65762004145998989799787-647-74457613064310213457776322334534434203


Q ss_pred             CCCCCCCC--CCCCCCC-CCCCCCCCCCCC
Q ss_conf             44455553--2137743-352125565478
Q 005587          206 NNQLSGTL--DVLQDLP-LRDLNIENNLFS  232 (689)
Q Consensus       206 ~N~l~g~~--~~~~~~~-L~~L~ls~N~l~  232 (689)
                      +|+++...  ..+..++ |+.|++++|.++
T Consensus        96 ~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          96 NNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             SCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
T ss_conf             000166542110013653206640799634

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1e-14  Score=90.66  Aligned_cols=165  Identities=15%  Similarity=0.153  Sum_probs=115.5

Q ss_pred             EEECCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCC-CCCCCCCCC
Q ss_conf             93099867999149988764573556999997998317868997788632--354530035755789999-656799976
Q 005587           75 QCNASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIP-SSLATLTLL  151 (689)
Q Consensus        75 ~C~~~~v~~l~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~l~g~ip~~~~--~~L~~L~Ls~N~l~g~~p-~~l~~l~~L  151 (689)
                      .|++.. ..++.++.++. .+|+.+.  ++++.|+|++|.+....+..|.  .+|++|+|++|.+...++ ..|..++.+
T Consensus         5 ~C~C~~-~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l   80 (242)
T d1xwdc1           5 ICHCSN-RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL   80 (242)
T ss_dssp             SEEECS-SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTC
T ss_pred             CCCCCC-CEEEEECCCCC-CCCCCCC--CCCCEEECCCCCCCCCCHHHHHCCCHHHHHHHCCCCCCCEEECCCCCCCCCC
T ss_conf             288739-99998189988-7688889--9889998769918964966861464323211022112420100112222222


Q ss_pred             CEEECC-CCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCC-CCCCCCC--CCCCCC
Q ss_conf             699846-8867877871112999997898327878777898-7547766555661144455553-2137743--352125
Q 005587          152 TDMSLN-NNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPP-SLENLSQLTTLHLQNNQLSGTL-DVLQDLP--LRDLNI  226 (689)
Q Consensus       152 ~~L~Ls-~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~ip~-~~~~l~~L~~L~Ls~N~l~g~~-~~~~~~~--L~~L~l  226 (689)
                      +.+++. .|.+....+..|..+++|+.|++++|.+....+. .+..+..+..+...++.+.... ..+..++  +..+++
T Consensus        81 ~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l  160 (242)
T d1xwdc1          81 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL  160 (242)
T ss_dssp             CEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
T ss_conf             22111112343222222122222222223421111255433322211112222222121112222222222331001220


Q ss_pred             CCCCCCCCCCCCCCCCCC
Q ss_conf             565478997611589887
Q 005587          227 ENNLFSGPIPEKMLQIPN  244 (689)
Q Consensus       227 s~N~l~g~~P~~l~~l~~  244 (689)
                      ++|+++ .++....+...
T Consensus       161 ~~n~l~-~i~~~~~~~~~  177 (242)
T d1xwdc1         161 NKNGIQ-EIHNCAFNGTQ  177 (242)
T ss_dssp             CSSCCC-EECTTTTTTCC
T ss_pred             CCCCCC-CCCCCCCCCHH
T ss_conf             012333-32222222011

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.2e-14  Score=90.38  Aligned_cols=107  Identities=22%  Similarity=0.241  Sum_probs=75.5

Q ss_pred             CCCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             986279309986799914998876457355699999799831786-8997788632354530035755789999656799
Q 005587           70 SWQGVQCNASDIIAIILNGANLGGELGENLGAFSSIRVIDLSNNH-IGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATL  148 (689)
Q Consensus        70 ~w~gv~C~~~~v~~l~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~-l~g~ip~~~~~~L~~L~Ls~N~l~g~~p~~l~~l  148 (689)
                      .+.+|+|...+++           .+|..+..+++|+.|++++|+ +.                      ..-+..|.++
T Consensus         9 ~~~~l~c~~~~~~-----------~~p~~l~~l~~l~~L~l~~n~~l~----------------------~i~~~~f~~l   55 (156)
T d2ifga3           9 GSSGLRCTRDGAL-----------DSLHHLPGAENLTELYIENQQHLQ----------------------HLELRDLRGL   55 (156)
T ss_dssp             SSSCEECCSSCCC-----------TTTTTSCSCSCCSEEECCSCSSCC----------------------EECGGGSCSC
T ss_pred             CCCEEEECCCCCC-----------CCCCCCCCCCCCCEEECCCCCCCC----------------------CCCCHHHCCC
T ss_conf             9996985289976-----------586002576565743168986644----------------------3692122566


Q ss_pred             CCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf             97669984688678778711129999978983278787778987547766555661144455
Q 005587          149 TLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQNNQLS  210 (689)
Q Consensus       149 ~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~  210 (689)
                      ++|+.|+|++|.|+...|..|..+++|+.|+|++|+|+ .+|.......+|+.|+|++|.|.
T Consensus        56 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          56 GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCCCCCEEECCCCCCCCCCCCCCCCCCCCEECCCCCCC-CCCHHHHCCCCCCCCCCCCCCCC
T ss_conf             66672162021247742011124554333322678785-15745633532124335798633

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.57  E-value=9e-14  Score=85.73  Aligned_cols=98  Identities=29%  Similarity=0.427  Sum_probs=50.2

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCC
Q ss_conf             99799831786899778863235453003575578999965679997669984688678778711129999978983278
Q 005587          104 SIRVIDLSNNHIGGSIPSILPVTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSN  183 (689)
Q Consensus       104 ~L~~L~Ls~N~l~g~ip~~~~~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N  183 (689)
                      +|+.|||++|.++ .+|. +.++|++|+|++|+++ .+|..+   .+|+.|++++|.++ .++. +  .+.|++|++++|
T Consensus        39 ~l~~LdLs~~~L~-~lp~-~~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L~~n  108 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPE-LPPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSD-L--PPLLEYLGVSNN  108 (353)
T ss_dssp             TCSEEECTTSCCS-CCCS-CCTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCS-C--CTTCCEEECCSS
T ss_pred             CCCEEEECCCCCC-CCCC-CCCCCCEEECCCCCCC-CCCCCH---HHHHHHHHHHCCCC-HHHH-H--CCCCCCCCCCCC
T ss_conf             9989993799988-7889-8789888989999796-336203---32033266551432-0321-0--221111133455


Q ss_pred             CCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf             787778987547766555661144455553
Q 005587          184 NLSGELPPSLENLSQLTTLHLQNNQLSGTL  213 (689)
Q Consensus       184 ~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~~  213 (689)
                      .+. .+|. ++.+++|+.|++++|.+...+
T Consensus       109 ~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~  136 (353)
T d1jl5a_         109 QLE-KLPE-LQNSSFLKIIDVDNNSLKKLP  136 (353)
T ss_dssp             CCS-SCCC-CTTCTTCCEEECCSSCCSCCC
T ss_pred             CCC-CCCC-HHHHCCCEEECCCCCCCCCCC
T ss_conf             432-2210-011013123113565100132

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.4e-14  Score=87.34  Aligned_cols=105  Identities=20%  Similarity=0.190  Sum_probs=85.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCC-CCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             453003575578999965679997669984688-6787787111299999789832787877789875477665556611
Q 005587          127 MQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNN-LLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHLQ  205 (689)
Q Consensus       127 L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N-~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls  205 (689)
                      ...++++++.+. ..|..+..+++|+.|++++| .++...+..|.++++|+.|+|++|+|+...+..|..+++|+.|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCEEEECCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECC
T ss_conf             996985289976-5860025765657431689866443692122566666721620212477420111245543333226


Q ss_pred             CCCCCCCCC-CCCCCCCCCCCCCCCCCC
Q ss_conf             444555532-137743352125565478
Q 005587          206 NNQLSGTLD-VLQDLPLRDLNIENNLFS  232 (689)
Q Consensus       206 ~N~l~g~~~-~~~~~~L~~L~ls~N~l~  232 (689)
                      +|+|+...+ .+..++|..|+|++|.|.
T Consensus        89 ~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCCCCCCCHHHHCCCCCCCCCCCCCCCC
T ss_conf             7878515745633532124335798633

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.49  E-value=4.4e-17  Score=103.05  Aligned_cols=113  Identities=23%  Similarity=0.328  Sum_probs=74.6

Q ss_pred             CCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCC
Q ss_conf             4573556999997998317868997788632--35453003575578999965679997669984688678778711129
Q 005587           94 ELGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQS  171 (689)
Q Consensus        94 ~lp~~l~~L~~L~~L~Ls~N~l~g~ip~~~~--~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~P~~l~~  171 (689)
                      .++..+..|++|+.|+|++|++. .++. +.  .+|+.|+|++|.++ .+|..+..+++|+.|++++|.++. + ..+..
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~-~i~~-l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~  113 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIE-KISS-LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEK  113 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEES-CCCC-HHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHH
T ss_pred             HHHHHHHCCCCCCEEECCCCCCC-CCCC-CCCCCCCCCHHHCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCC-C-CCCCC
T ss_conf             02467762604615199446899-8644-247825357341353432-100003322123333333322222-2-22222


Q ss_pred             CCCCCEEECCCCCCCCCCC--CCCCCCCCCCEEECCCCCCCCC
Q ss_conf             9999789832787877789--8754776655566114445555
Q 005587          172 LTGLINLDLSSNNLSGELP--PSLENLSQLTTLHLQNNQLSGT  212 (689)
Q Consensus       172 l~~L~~L~Ls~N~l~g~ip--~~~~~l~~L~~L~Ls~N~l~g~  212 (689)
                      +++|+.|++++|+++. ++  ..+..+++|+.|++++|.+...
T Consensus       114 l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         114 LVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             CCCCCCCCCCCCHHCC-CCCCCCCCCCCCCCEEECCCCCCCCC
T ss_conf             2234111234102125-54221236777630234279843467

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.43  E-value=3.9e-16  Score=98.07  Aligned_cols=103  Identities=29%  Similarity=0.353  Sum_probs=47.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             35453003575578999965679997669984688678778711129999978983278787778987547766555661
Q 005587          125 VTMQNFFLSDNQFSGSIPSSLATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGELPPSLENLSQLTTLHL  204 (689)
Q Consensus       125 ~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~L  204 (689)
                      .+|+.|+|++|+++ .++ .|..+++|+.|+|++|.++ .+|..+..+.+|+.|++++|.++. ++ .+..+++|+.|++
T Consensus        48 ~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~L  122 (198)
T d1m9la_          48 KACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYM  122 (198)
T ss_dssp             TTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HH-HHHHHHHSSEEEE
T ss_pred             CCCCEEECCCCCCC-CCC-CCCCCCCCCCHHHCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCC-CC-CCCCCCCCCCCCC
T ss_conf             04615199446899-864-4247825357341353432-100003322123333333322222-22-2222223411123


Q ss_pred             CCCCCCCCC--CCCCCCC-CCCCCCCCCCCC
Q ss_conf             144455553--2137743-352125565478
Q 005587          205 QNNQLSGTL--DVLQDLP-LRDLNIENNLFS  232 (689)
Q Consensus       205 s~N~l~g~~--~~~~~~~-L~~L~ls~N~l~  232 (689)
                      ++|+++...  ..+..++ |+.|++++|.+.
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             CCCHHCCCCCCCCCCCCCCCCEEECCCCCCC
T ss_conf             4102125542212367776302342798434

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.32  E-value=1.2e-14  Score=90.31  Aligned_cols=153  Identities=23%  Similarity=0.326  Sum_probs=61.0

Q ss_pred             CEEEEEECCCCCCCC----CCCCCCCCCCCCEEECCCCCCCCCCCC---C-------CC--CCCCCCCCCCCCCCCC---
Q ss_conf             867999149988764----573556999997998317868997788---6-------32--3545300357557899---
Q 005587           80 DIIAIILNGANLGGE----LGENLGAFSSIRVIDLSNNHIGGSIPS---I-------LP--VTMQNFFLSDNQFSGS---  140 (689)
Q Consensus        80 ~v~~l~L~~~~l~g~----lp~~l~~L~~L~~L~Ls~N~l~g~ip~---~-------~~--~~L~~L~Ls~N~l~g~---  140 (689)
                      .++.|+|++|.+...    +...+...+.|+.|+++++.+......   .       +.  ++|+.|+|++|.+...   
T Consensus        32 ~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  111 (344)
T d2ca6a1          32 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE  111 (344)
T ss_dssp             CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred             CCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf             97889784983778999999999985899888888777543345421067879998875477756330000134554333


Q ss_pred             -CCCCCCCCCCCCEEECCCCCCCCCCCH-------------HHCCCCCCCEEECCCCCCCCC----CCCCCCCCCCCCEE
Q ss_conf             -996567999766998468867877871-------------112999997898327878777----89875477665556
Q 005587          141 -IPSSLATLTLLTDMSLNNNLLSGEIPD-------------AFQSLTGLINLDLSSNNLSGE----LPPSLENLSQLTTL  202 (689)
Q Consensus       141 -~p~~l~~l~~L~~L~Ls~N~l~g~~P~-------------~l~~l~~L~~L~Ls~N~l~g~----ip~~~~~l~~L~~L  202 (689)
                       +...+...++|+.|++++|.+...-..             .......|+.+++++|.+...    +...+..+..|+.|
T Consensus       112 ~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L  191 (344)
T d2ca6a1         112 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV  191 (344)
T ss_dssp             HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred             CHHHHHCCCCCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCC
T ss_conf             10111002343210000024666654311112122221100014676421110136501355433221111233321335


Q ss_pred             ECCCCCCCCC-----C-CCCCCCC-CCCCCCCCCCCC
Q ss_conf             6114445555-----3-2137743-352125565478
Q 005587          203 HLQNNQLSGT-----L-DVLQDLP-LRDLNIENNLFS  232 (689)
Q Consensus       203 ~Ls~N~l~g~-----~-~~~~~~~-L~~L~ls~N~l~  232 (689)
                      +|++|.+...     + ..+...+ |+.|++++|.++
T Consensus       192 ~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~  228 (344)
T d2ca6a1         192 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT  228 (344)
T ss_dssp             ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred             CCCCCCCCCCCCCCCHHHHHCCHHHHCCCCCCCCCCC
T ss_conf             4333222222232002433211012112223333222

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=8.9e-14  Score=85.73  Aligned_cols=166  Identities=18%  Similarity=0.235  Sum_probs=82.0

Q ss_pred             CEEEEEECCCCCCCC-CCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCCCCC-CCCCC-CCCCCCCCCCCCEE
Q ss_conf             867999149988764-573556999997998317868997788632--35453003575-57899-99656799976699
Q 005587           80 DIIAIILNGANLGGE-LGENLGAFSSIRVIDLSNNHIGGSIPSILP--VTMQNFFLSDN-QFSGS-IPSSLATLTLLTDM  154 (689)
Q Consensus        80 ~v~~l~L~~~~l~g~-lp~~l~~L~~L~~L~Ls~N~l~g~ip~~~~--~~L~~L~Ls~N-~l~g~-~p~~l~~l~~L~~L  154 (689)
                      ++..|+|+++.+... +...+..+++|+.|+|+++.+++..+..+.  ++|++|+|+++ .++.. +..-+..+++|+.|
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC
T ss_conf             78878898984577799999974877651452346798678999851899757151001341235540365788743565


Q ss_pred             ECCCC-CCCCC-CCHHHCC-CCCCCEEECCCC--CCCC-CCCCCCCCCCCCCEEECCCC-CCCCC-CCCCCCCC-CCCCC
Q ss_conf             84688-67877-8711129-999978983278--7877-78987547766555661144-45555-32137743-35212
Q 005587          155 SLNNN-LLSGE-IPDAFQS-LTGLINLDLSSN--NLSG-ELPPSLENLSQLTTLHLQNN-QLSGT-LDVLQDLP-LRDLN  225 (689)
Q Consensus       155 ~Ls~N-~l~g~-~P~~l~~-l~~L~~L~Ls~N--~l~g-~ip~~~~~l~~L~~L~Ls~N-~l~g~-~~~~~~~~-L~~L~  225 (689)
                      +++++ .++.. +...+.. .+.|+.|++++.  .++. .+...+.++++|+.|++++| .+++. +..+..++ |+.|+
T Consensus       127 ~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~  206 (284)
T d2astb2         127 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS  206 (284)
T ss_dssp             ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred             CCCCCCCCCCCCCHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEE
T ss_conf             22453323332200010001111101221355424444434342323222123553223477830333321357687798


Q ss_pred             CCC-CCCCCCCCCCCCCCCCC
Q ss_conf             556-54789976115898873
Q 005587          226 IEN-NLFSGPIPEKMLQIPNF  245 (689)
Q Consensus       226 ls~-N~l~g~~P~~l~~l~~l  245 (689)
                      +++ +.+++.....+.++++|
T Consensus       207 L~~C~~i~~~~l~~L~~~~~L  227 (284)
T d2astb2         207 LSRCYDIIPETLLELGEIPTL  227 (284)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTC
T ss_pred             CCCCCCCCHHHHHHHHCCCCC
T ss_conf             999997873789997269998

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.14  E-value=1.4e-12  Score=79.43  Aligned_cols=134  Identities=24%  Similarity=0.349  Sum_probs=54.7

Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCC----C--CCCCCCCCCCCCCCCCCCC-------------CCCCCCCCCEEECCCC
Q ss_conf             5699999799831786899778863----2--3545300357557899996-------------5679997669984688
Q 005587           99 LGAFSSIRVIDLSNNHIGGSIPSIL----P--VTMQNFFLSDNQFSGSIPS-------------SLATLTLLTDMSLNNN  159 (689)
Q Consensus        99 l~~L~~L~~L~Ls~N~l~g~ip~~~----~--~~L~~L~Ls~N~l~g~~p~-------------~l~~l~~L~~L~Ls~N  159 (689)
                      +...+.|+.|+|++|.+...--..+    .  ++|+.|++++|.+...-..             .....+.|+.+++++|
T Consensus        89 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n  168 (344)
T d2ca6a1          89 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  168 (344)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCC
T ss_conf             75477756330000134554333101110023432100000246666543111121222211000146764211101365


Q ss_pred             CCCCC----CCHHHCCCCCCCEEECCCCCCCCC-----CCCCCCCCCCCCEEECCCCCCCCC----C-CCCCCCC-CCCC
Q ss_conf             67877----871112999997898327878777-----898754776655566114445555----3-2137743-3521
Q 005587          160 LLSGE----IPDAFQSLTGLINLDLSSNNLSGE-----LPPSLENLSQLTTLHLQNNQLSGT----L-DVLQDLP-LRDL  224 (689)
Q Consensus       160 ~l~g~----~P~~l~~l~~L~~L~Ls~N~l~g~-----ip~~~~~l~~L~~L~Ls~N~l~g~----~-~~~~~~~-L~~L  224 (689)
                      .+...    +...+.....|+.|+|+.|.+...     +...+..+++|+.|++++|.++..    + ..+...+ |+.|
T Consensus       169 ~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L  248 (344)
T d2ca6a1         169 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL  248 (344)
T ss_dssp             CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred             CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf             01355433221111233321335433322222223200243321101211222333322222222344433232211110


Q ss_pred             CCCCCCCC
Q ss_conf             25565478
Q 005587          225 NIENNLFS  232 (689)
Q Consensus       225 ~ls~N~l~  232 (689)
                      ++++|.++
T Consensus       249 ~Ls~n~i~  256 (344)
T d2ca6a1         249 GLNDCLLS  256 (344)
T ss_dssp             ECTTCCCC
T ss_pred             HHHCCCCC
T ss_conf             30047567

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=4.1e-12  Score=77.05  Aligned_cols=151  Identities=20%  Similarity=0.276  Sum_probs=67.2

Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCC-CCCCC-CCCCCC--CCCCCCCCCCC-CCCCC-CCCCCCC-CCCC
Q ss_conf             98679991499887645735569999979983178-68997-788632--35453003575-57899-9965679-9976
Q 005587           79 SDIIAIILNGANLGGELGENLGAFSSIRVIDLSNN-HIGGS-IPSILP--VTMQNFFLSDN-QFSGS-IPSSLAT-LTLL  151 (689)
Q Consensus        79 ~~v~~l~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N-~l~g~-ip~~~~--~~L~~L~Ls~N-~l~g~-~p~~l~~-l~~L  151 (689)
                      .+++.|+|.++.+.+..+..++.+++|+.|+|+++ .++.. +.....  ++|++|+|+++ .++.. +...+.. .+.|
T Consensus        71 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L  150 (284)
T d2astb2          71 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI  150 (284)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCC
T ss_conf             77651452346798678999851899757151001341235540365788743565224533233322000100011111


Q ss_pred             CEEECCCC--CCCCC-CCHHHCCCCCCCEEECCCC-CCCCCCCCCCCCCCCCCEEECCCC-CCCCCC-CCCCCCC-CCCC
Q ss_conf             69984688--67877-8711129999978983278-787778987547766555661144-455553-2137743-3521
Q 005587          152 TDMSLNNN--LLSGE-IPDAFQSLTGLINLDLSSN-NLSGELPPSLENLSQLTTLHLQNN-QLSGTL-DVLQDLP-LRDL  224 (689)
Q Consensus       152 ~~L~Ls~N--~l~g~-~P~~l~~l~~L~~L~Ls~N-~l~g~ip~~~~~l~~L~~L~Ls~N-~l~g~~-~~~~~~~-L~~L  224 (689)
                      +.|++++.  .++.. +...+..+++|+.|++++| .+++.....+.++++|++|+++++ .++... ..+..++ |+.|
T Consensus       151 ~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L  230 (284)
T d2astb2         151 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL  230 (284)
T ss_dssp             CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             CHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHCCCCCCEE
T ss_conf             01221355424444434342323222123553223477830333321357687798999997873789997269998989


Q ss_pred             CCCCC
Q ss_conf             25565
Q 005587          225 NIENN  229 (689)
Q Consensus       225 ~ls~N  229 (689)
                      +++++
T Consensus       231 ~l~~~  235 (284)
T d2astb2         231 QVFGI  235 (284)
T ss_dssp             ECTTS
T ss_pred             EEECC
T ss_conf             64488

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.6e-12  Score=79.23  Aligned_cols=107  Identities=23%  Similarity=0.341  Sum_probs=46.5

Q ss_pred             CEEEEEECCCCCCCC-CCCCCCCCCCCCEEECCCCCCCCC----CCCCCC--CCCCCCCCCCCCCCCC----CCCCCC-C
Q ss_conf             867999149988764-573556999997998317868997----788632--3545300357557899----996567-9
Q 005587           80 DIIAIILNGANLGGE-LGENLGAFSSIRVIDLSNNHIGGS----IPSILP--VTMQNFFLSDNQFSGS----IPSSLA-T  147 (689)
Q Consensus        80 ~v~~l~L~~~~l~g~-lp~~l~~L~~L~~L~Ls~N~l~g~----ip~~~~--~~L~~L~Ls~N~l~g~----~p~~l~-~  147 (689)
                      ++..||++++.+++. +..-+..+++++.|+|++|.++..    +...+.  ++|++|+|++|.++..    +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHCC
T ss_conf             87779820895886899999976779999982899998899999999985399988897959859728999999998437


Q ss_pred             CCCCCEEECCCCCCCCC----CCHHHCCCCCCCEEECCCCCCC
Q ss_conf             99766998468867877----8711129999978983278787
Q 005587          148 LTLLTDMSLNNNLLSGE----IPDAFQSLTGLINLDLSSNNLS  186 (689)
Q Consensus       148 l~~L~~L~Ls~N~l~g~----~P~~l~~l~~L~~L~Ls~N~l~  186 (689)
                      ..+|+.|+|++|.++..    ++..+..+++|++|++++|.++
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCH
T ss_conf             8877887788877543221012110000343200244433202

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.97  E-value=5.4e-09  Score=60.73  Aligned_cols=145  Identities=12%  Similarity=0.094  Sum_probs=89.3

Q ss_pred             CCCCCCCCEEEECCCEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC-CCCCCEECEEEEECCEEEEEE
Q ss_conf             1597744447102873899999389969999993354588566999999999981389-987200017999599699998
Q 005587          508 TNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR-HANIVELKGYCAEHGQRLLIY  586 (689)
Q Consensus       508 ~~~f~~~~~lG~G~~g~Vy~~~~~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~-Hpniv~l~~~~~~~~~~~lV~  586 (689)
                      -+.|......+-++...||+... +++.+.+|+......  .....+.+|...+..+. +--+.+++.++...+..++||
T Consensus        13 ~~~~~~~~~~~G~s~~~v~rv~~-~~~~~vlk~~~~~~~--~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~~~lv~   89 (263)
T d1j7la_          13 IEKYRCVKDTEGMSPAKVYKLVG-ENENLYLKMTDSRYK--GTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLM   89 (263)
T ss_dssp             HTTSEEEECSCCCSSSEEEEEEC-SSCEEEEEEECGGGT--TSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEE
T ss_pred             HHCEEEEECCCCCCCCCEEEEEE-CCCEEEEEECCCCCC--CCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEE
T ss_conf             13527997678998771899990-898699998488765--325569999999998760699872899975089649999


Q ss_pred             ECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-----------------------------------
Q ss_conf             136889988998319545789999999999999999999999499-----------------------------------
Q 005587          587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEIC-----------------------------------  631 (689)
Q Consensus       587 Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~-----------------------------------  631 (689)
                      ++++|..+.+.....      ..   ...++.++++.+..||...                                   
T Consensus        90 ~~l~G~~~~~~~~~~------~~---~~~~~~~l~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (263)
T d1j7la_          90 SEADGVLCSEEYEDE------QS---PEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEE  160 (263)
T ss_dssp             ECCSSEEHHHHTTTC------SC---HHHHHHHHHHHHHHHHTSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCCGGGGST
T ss_pred             EECCCCCCCCCCCCC------CC---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             860433435433440------26---999999899999998556842143576446565557789987765555430332


Q ss_pred             ---------------------CCCCEEECCCCCCEEECCCCCEEEEEECCCCCC
Q ss_conf             ---------------------998198044689858669994999861477655
Q 005587          632 ---------------------QPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI  664 (689)
Q Consensus       632 ---------------------~~~IiHrDlkp~NILld~~~~~ki~DFGla~~~  664 (689)
                                           ...++|+|+.+.|||++++...-|.||+.+..-
T Consensus       161 ~~~~~~~~~~~~~l~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDwe~a~~g  214 (263)
T d1j7la_         161 DTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRA  214 (263)
T ss_dssp             TCSCSSHHHHHHHHHHSCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEEE
T ss_pred             CCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEECCCCEEEEEECHHCCCC
T ss_conf             320057999999998449867817898600476423649965999602314418

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1e-11  Score=75.02  Aligned_cols=108  Identities=26%  Similarity=0.400  Sum_probs=64.9

Q ss_pred             CCCEEECCCCCCCCCC-CCCCC--CCCCCCCCCCCCCCC----CCCCCCCCCCCCCEEECCCCCCCCC----CCHHHC-C
Q ss_conf             9979983178689977-88632--354530035755789----9996567999766998468867877----871112-9
Q 005587          104 SIRVIDLSNNHIGGSI-PSILP--VTMQNFFLSDNQFSG----SIPSSLATLTLLTDMSLNNNLLSGE----IPDAFQ-S  171 (689)
Q Consensus       104 ~L~~L~Ls~N~l~g~i-p~~~~--~~L~~L~Ls~N~l~g----~~p~~l~~l~~L~~L~Ls~N~l~g~----~P~~l~-~  171 (689)
                      .|+.||++.|++++.. ...++  .+++.|+|++|.++.    .+...+..+++|+.|+|++|.++..    +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHCC
T ss_conf             87779820895886899999976779999982899998899999999985399988897959859728999999998437


Q ss_pred             CCCCCEEECCCCCCCCC----CCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             99997898327878777----89875477665556611444555
Q 005587          172 LTGLINLDLSSNNLSGE----LPPSLENLSQLTTLHLQNNQLSG  211 (689)
Q Consensus       172 l~~L~~L~Ls~N~l~g~----ip~~~~~l~~L~~L~Ls~N~l~g  211 (689)
                      ..+|+.|+|++|.++..    ++..+..+++|+.|++++|.++.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCHH
T ss_conf             88778877888775432210121100003432002444332023

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=2.2e-10  Score=67.95  Aligned_cols=91  Identities=19%  Similarity=0.304  Sum_probs=49.0

Q ss_pred             CCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCC--CCCCCCCCCCCCEEECCCCCCCCCCC--CCCCCC
Q ss_conf             67999766998468867877871112999997898327878777--89875477665556611444555532--137743
Q 005587          145 LATLTLLTDMSLNNNLLSGEIPDAFQSLTGLINLDLSSNNLSGE--LPPSLENLSQLTTLHLQNNQLSGTLD--VLQDLP  220 (689)
Q Consensus       145 l~~l~~L~~L~Ls~N~l~g~~P~~l~~l~~L~~L~Ls~N~l~g~--ip~~~~~l~~L~~L~Ls~N~l~g~~~--~~~~~~  220 (689)
                      +..+..+..+++.+|... .++..+..+++|++|+|++|+++..  ++..+..+++|+.|+|++|.++...+  .+....
T Consensus        38 l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~  116 (162)
T d1koha1          38 LVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK  116 (162)
T ss_dssp             TTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCC
T ss_pred             HHHCCCHHHCCHHHHHHH-HHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCC
T ss_conf             554664011225556766-6078897487878863777666677315889865885610004357213423442220331


Q ss_pred             CCCCCCCCCCCCCCCC
Q ss_conf             3521255654789976
Q 005587          221 LRDLNIENNLFSGPIP  236 (689)
Q Consensus       221 L~~L~ls~N~l~g~~P  236 (689)
                      ++.+++++|.++....
T Consensus       117 L~~L~L~~Npl~~~~~  132 (162)
T d1koha1         117 LEELWLDGNSLSDTFR  132 (162)
T ss_dssp             CSSCCCTTSTTSSSSS
T ss_pred             CCEEECCCCCCCCCCC
T ss_conf             0426648997676766

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=98.65  E-value=8.1e-08  Score=54.58  Aligned_cols=142  Identities=18%  Similarity=0.192  Sum_probs=78.8

Q ss_pred             EEECCC-EEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC--CCCCCEECEEEEECCEEEEEEECCCCCC
Q ss_conf             710287-3899999389969999993354588566999999999981389--9872000179995996999981368899
Q 005587          517 IGAGML-GSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR--HANIVELKGYCAEHGQRLLIYEYCSNGT  593 (689)
Q Consensus       517 lG~G~~-g~Vy~~~~~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~--Hpniv~l~~~~~~~~~~~lV~Ey~~~Gs  593 (689)
                      +..|.. ..||+....++..+.+|.......     ..+..|...+..+.  .-.+.+++.++.+.+..++||||++|..
T Consensus        18 ~~~G~s~~~v~r~~~~~~~~~vlK~~~~~~~-----~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~~~i~G~~   92 (255)
T d1nd4a_          18 QTIGCSDAAVFRLSAQGRPVLFVKTDLSGAL-----NELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQD   92 (255)
T ss_dssp             CSCTTSSCEEEEEECTTSCCEEEEEECSCTT-----SCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEE
T ss_pred             CCCCCCCCEEEEEEECCCCEEEEEECCCCCH-----HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEEEEEECCC
T ss_conf             6786547758999938987899995896677-----68999999999998659998861322245661599987441355


Q ss_pred             HHHH-----------------HHCCCCCCC--CCCHHHHHHHHH--------------------HHHHHHHHHHHCC---
Q ss_conf             8899-----------------831954578--999999999999--------------------9999999999499---
Q 005587          594 LQDM-----------------LHSDDELKN--NLSWNTRIRMAL--------------------GAARALEYLHEIC---  631 (689)
Q Consensus       594 L~~~-----------------l~~~~~~~~--~l~~~~~~~i~~--------------------~ia~aL~yLH~~~---  631 (689)
                      +.+.                 +|.......  ...+.....-..                    .....+..+....   
T Consensus        93 ~~~~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  172 (255)
T d1nd4a_          93 LLSSHLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLKARMPDG  172 (255)
T ss_dssp             TTTSCCCHHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHHHHHHTCCSS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             43221268999999999999873688544887554124688999999875411011340112137999999998718765


Q ss_pred             -CCCCEEECCCCCCEEECCCCCEEEEEECCCCC
Q ss_conf             -99819804468985866999499986147765
Q 005587          632 -QPPIVHRNFKSANILLDDDLAVSVSDCGLAPL  663 (689)
Q Consensus       632 -~~~IiHrDlkp~NILld~~~~~ki~DFGla~~  663 (689)
                       .+.++|+|+.+.|||++++..+-|+||+.+..
T Consensus       173 ~~~~liHgD~~~~Nvl~~~~~~~~iID~~~~~~  205 (255)
T d1nd4a_         173 EDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV  205 (255)
T ss_dssp             CCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             CCCEEEECCCCCCCEEEECCCEEEEEECHHCCC
T ss_conf             795678678887635773796589998533265

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=6.4e-09  Score=60.35  Aligned_cols=65  Identities=28%  Similarity=0.268  Sum_probs=29.1

Q ss_pred             CCCCCCCEEECCCCCCCCC--CCHHHCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCC
Q ss_conf             7999766998468867877--871112999997898327878777898-75477665556611444555
Q 005587          146 ATLTLLTDMSLNNNLLSGE--IPDAFQSLTGLINLDLSSNNLSGELPP-SLENLSQLTTLHLQNNQLSG  211 (689)
Q Consensus       146 ~~l~~L~~L~Ls~N~l~g~--~P~~l~~l~~L~~L~Ls~N~l~g~ip~-~~~~l~~L~~L~Ls~N~l~g  211 (689)
                      ..++.|+.|+|++|+++..  ++..+..+++|+.|+|++|.++. ++. .+.....|+.|++++|.+..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~-l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC-GGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HHCCCCCEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC-CHHHHHHHCCCCCEEECCCCCCCC
T ss_conf             74878788637776666773158898658856100043572134-234422203310426648997676

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=98.41  E-value=8.7e-07  Score=49.20  Aligned_cols=77  Identities=16%  Similarity=0.031  Sum_probs=45.0

Q ss_pred             CEEEECCCEEEEEEEECC-CCEEEEEEECCC--C---CCHHHHHHHHHHHHHHHCCC---CCCCCEECEEEEECCEEEEE
Q ss_conf             447102873899999389-969999993354--5---88566999999999981389---98720001799959969999
Q 005587          515 NLIGAGMLGSVYRAQLPD-GKLLAVKKLDKR--A---SSQQKDDEFLELVNNIDRIR---HANIVELKGYCAEHGQRLLI  585 (689)
Q Consensus       515 ~~lG~G~~g~Vy~~~~~~-g~~vAVK~i~~~--~---~~~~~~~~~~~e~~~l~~l~---Hpniv~l~~~~~~~~~~~lV  585 (689)
                      +.||.|..-.||+....+ ++.+.||.-...  .   .......+...|...+..+.   ...+.+++.+  +.+..++|
T Consensus        32 ~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~--d~~~~~lv  109 (392)
T d2pula1          32 QEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVTV  109 (392)
T ss_dssp             EECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEEE
T ss_pred             EEECCCCEEEEEEEEECCCCEEEEEECCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEE--CCCCCEEE
T ss_conf             9807985276899995799848999617713034677788877899999999998650579885528998--59887798


Q ss_pred             EECCCCCC
Q ss_conf             81368899
Q 005587          586 YEYCSNGT  593 (689)
Q Consensus       586 ~Ey~~~Gs  593 (689)
                      |||+++..
T Consensus       110 mE~L~~~~  117 (392)
T d2pula1         110 MEDLSHLK  117 (392)
T ss_dssp             ECCCTTSE
T ss_pred             EECCCCCC
T ss_conf             71357765

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.06  E-value=4.3e-07  Score=50.79  Aligned_cols=10  Identities=10%  Similarity=0.614  Sum_probs=4.2

Q ss_pred             CCCCEEECCC
Q ss_conf             9997998317
Q 005587          103 SSIRVIDLSN  112 (689)
Q Consensus       103 ~~L~~L~Ls~  112 (689)
                      +.|+.|+|++
T Consensus        15 ~~L~~L~L~~   24 (167)
T d1pgva_          15 TDLKEVNINN   24 (167)
T ss_dssp             SSCCEEECTT
T ss_pred             CCCCEEEECC
T ss_conf             9981978279

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=5.3e-05  Score=39.86  Aligned_cols=136  Identities=15%  Similarity=0.132  Sum_probs=72.4

Q ss_pred             EEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC-----CCCCCEEC--EEEEECCEEEEEEECCCCCCHH
Q ss_conf             3899999389969999993354588566999999999981389-----98720001--7999599699998136889988
Q 005587          523 GSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIR-----HANIVELK--GYCAEHGQRLLIYEYCSNGTLQ  595 (689)
Q Consensus       523 g~Vy~~~~~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~-----Hpniv~l~--~~~~~~~~~~lV~Ey~~~GsL~  595 (689)
                      -.||+++.++|..+++|.......   ...++..|...+..+.     .+..+..-  ......+..+.++++++|..+.
T Consensus        36 N~vy~v~~~dg~~~VlK~~rp~~~---s~~~i~~E~~~l~~L~~~gipv~~p~~~~g~~~~~~~~~~~~l~~~~~G~~~~  112 (325)
T d1zyla1          36 NRVYQFQDEDRRRFVVKFYRPERW---TADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGGRQFE  112 (325)
T ss_dssp             SEEEEECCTTCCCEEEEEECTTTS---CHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCCCEECC
T ss_pred             CEEEEEECCCCCEEEEEEECCCCC---CHHHHHHHHHHHHHHHHCCCCCCCCEECCCCEEEEEEEEEEEEEEECCCCCCC
T ss_conf             026999838999799998478778---89999999999999985599878752068980566534799998652776889


Q ss_pred             -----H---------HHHC----CC-CCCCCCCHHH-------------------HHHHHHHHHHHHHHHHH----CCCC
Q ss_conf             -----9---------9831----95-4578999999-------------------99999999999999994----9999
Q 005587          596 -----D---------MLHS----DD-ELKNNLSWNT-------------------RIRMALGAARALEYLHE----ICQP  633 (689)
Q Consensus       596 -----~---------~l~~----~~-~~~~~l~~~~-------------------~~~i~~~ia~aL~yLH~----~~~~  633 (689)
                           .         .+|.    .. ......++..                   +..+...+.+.+..+..    ....
T Consensus       113 ~~~~~~~~~lG~~LA~lH~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~  192 (325)
T d1zyla1         113 ADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTAHWREDFTV  192 (325)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHHHHHHCCSCSCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             99999999989999998863035786556778978876656899987476998898999999999999999845456871


Q ss_pred             CCEEECCCCCCEEECCCCCEEEEEECCCCC
Q ss_conf             819804468985866999499986147765
Q 005587          634 PIVHRNFKSANILLDDDLAVSVSDCGLAPL  663 (689)
Q Consensus       634 ~IiHrDlkp~NILld~~~~~ki~DFGla~~  663 (689)
                      ++||+|+.+.|||++++  ..+.||+-+..
T Consensus       193 ~liHgDlh~~NvL~~~~--~~~IDFdd~~~  220 (325)
T d1zyla1         193 LRLHGDCHAGNILWRDG--PMFVDLDDARN  220 (325)
T ss_dssp             EECCSSCSGGGEEESSS--EEECCCTTCCE
T ss_pred             EEECCCCCCCCEEEECC--CEEEECHHCCC
T ss_conf             20247888042878389--35886520146

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.00  E-value=3.2e-07  Score=51.47  Aligned_cols=19  Identities=21%  Similarity=0.186  Sum_probs=7.8

Q ss_pred             CCCCCCCCCEEECCCCCCC
Q ss_conf             5569999979983178689
Q 005587           98 NLGAFSSIRVIDLSNNHIG  116 (689)
Q Consensus        98 ~l~~L~~L~~L~Ls~N~l~  116 (689)
                      .+...+.|+.|+|++|.+.
T Consensus        39 ~L~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          39 AACNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             HHTTCSCCCEEECTTSCCB
T ss_pred             HHHHCCCCCEEECCCCCCC
T ss_conf             9763776454012015621

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.75  E-value=0.0004  Score=35.28  Aligned_cols=163  Identities=15%  Similarity=0.156  Sum_probs=77.3

Q ss_pred             CCHHHHHHHCCCCCCCCEE-----EECCCEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHC--CCCCCCCE
Q ss_conf             3244485531597744447-----1028738999993899699999933545885669999999999813--89987200
Q 005587          499 FTIASLQQYTNSFSQENLI-----GAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDR--IRHANIVE  571 (689)
Q Consensus       499 ~~~~~l~~~~~~f~~~~~l-----G~G~~g~Vy~~~~~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~--l~Hpniv~  571 (689)
                      .+.++++.....|.++++.     ..|---+.|+.+..+|+ +++|+...... ......+..-+..+..  +..|..+.
T Consensus         3 ls~~el~~~l~~Y~lg~~~~~~~i~~G~~N~ny~v~t~~g~-yVLri~~~~~~-~~~l~~~~~~l~~L~~~g~pvp~pi~   80 (316)
T d2ppqa1           3 ITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKDP-LILTLYEKRVE-KNDLPFFLGLMQHLAAKGLSCPLPLP   80 (316)
T ss_dssp             CCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSCC-EEEEEECC----CCHHHHHHHHHHHHHHTTCCCCCBCC
T ss_pred             CCHHHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEECCCC-EEEEECCCCCC-HHHHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf             89999999998679998568523788852673899978972-89998078999-88999999998754302555455641


Q ss_pred             EC-E--EEEECCEEEEEEECCCCCCHHH--------------HHHCC----C-CCCCCCCHH------------------
Q ss_conf             01-7--9995996999981368899889--------------98319----5-457899999------------------
Q 005587          572 LK-G--YCAEHGQRLLIYEYCSNGTLQD--------------MLHSD----D-ELKNNLSWN------------------  611 (689)
Q Consensus       572 l~-~--~~~~~~~~~lV~Ey~~~GsL~~--------------~l~~~----~-~~~~~l~~~------------------  611 (689)
                      .. |  +....+....++.++.+.....              .++..    . .........                  
T Consensus        81 ~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (316)
T d2ppqa1          81 RKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEK  160 (316)
T ss_dssp             BTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTST
T ss_pred             ECCCCCCEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHCCH
T ss_conf             04897621341255024531146553332046788888998764544432024531011101200245677776531141


Q ss_pred             HHHHHHHHHHHHHHHHHH-CCCCCCEEECCCCCCEEECCCCCEEEEEECCCCC
Q ss_conf             999999999999999994-9999819804468985866999499986147765
Q 005587          612 TRIRMALGAARALEYLHE-ICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPL  663 (689)
Q Consensus       612 ~~~~i~~~ia~aL~yLH~-~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~  663 (689)
                      .....+......+.-.+. ....++||+|+.++||+++.+...-|.||+.+..
T Consensus       161 ~~~~~l~~~~~~~~~~~~~~L~~giIHgDl~~dNvl~~~~~v~gvIDF~~~~~  213 (316)
T d2ppqa1         161 GLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFACN  213 (316)
T ss_dssp             THHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCC
T ss_conf             27999999987642048554545033378636564020454126742221236

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.50  E-value=0.00034  Score=35.65  Aligned_cols=72  Identities=13%  Similarity=0.129  Sum_probs=39.1

Q ss_pred             CEEEECCCEEEEEEEECCC--------CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC-CCCCCEECEEEEECCEEEEE
Q ss_conf             4471028738999993899--------69999993354588566999999999981389-98720001799959969999
Q 005587          515 NLIGAGMLGSVYRAQLPDG--------KLLAVKKLDKRASSQQKDDEFLELVNNIDRIR-HANIVELKGYCAEHGQRLLI  585 (689)
Q Consensus       515 ~~lG~G~~g~Vy~~~~~~g--------~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~-Hpniv~l~~~~~~~~~~~lV  585 (689)
                      ..|+-|-.=.+|+....++        +.|.++... ....   .....+|..+++.+. +.-..++++++..    .+|
T Consensus        48 ~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g-~~~~---~idr~~E~~i~~~ls~~gl~Pkll~~~~~----g~I  119 (395)
T d1nw1a_          48 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYF-NPET---ESHLVAESVIFTLLSERHLGPKLYGIFSG----GRL  119 (395)
T ss_dssp             EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEEC-SCCC---HHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEE
T ss_pred             EECCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECC-CCCH---HHHHHHHHHHHHHHHHCCCCCEEEEECCC----CEE
T ss_conf             991785334348999688775445789817999659-9611---65899999999999757999808998189----569


Q ss_pred             EECCCCCCH
Q ss_conf             813688998
Q 005587          586 YEYCSNGTL  594 (689)
Q Consensus       586 ~Ey~~~GsL  594 (689)
                      +||++|..+
T Consensus       120 ~efi~g~~l  128 (395)
T d1nw1a_         120 EEYIPSRPL  128 (395)
T ss_dssp             ECCCCEEEC
T ss_pred             EEEECCCCC
T ss_conf             997345548

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.26  E-value=9.1e-06  Score=43.87  Aligned_cols=10  Identities=20%  Similarity=0.541  Sum_probs=3.9

Q ss_pred             CCCCEEECCC
Q ss_conf             9997998317
Q 005587          103 SSIRVIDLSN  112 (689)
Q Consensus       103 ~~L~~L~Ls~  112 (689)
                      +.|+.|+|++
T Consensus        17 ~~L~~L~L~~   26 (166)
T d1io0a_          17 PDLEEVNLNN   26 (166)
T ss_dssp             TTCCEEECTT
T ss_pred             CCCCEEECCC
T ss_conf             9986887689

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.03  E-value=8.5e-06  Score=44.03  Aligned_cols=37  Identities=16%  Similarity=0.214  Sum_probs=15.7

Q ss_pred             CEEEEEECC-CCCCCC----CCCCCCCCCCCCEEECCCCCCC
Q ss_conf             867999149-988764----5735569999979983178689
Q 005587           80 DIIAIILNG-ANLGGE----LGENLGAFSSIRVIDLSNNHIG  116 (689)
Q Consensus        80 ~v~~l~L~~-~~l~g~----lp~~l~~L~~L~~L~Ls~N~l~  116 (689)
                      .++.|+|++ +.++..    +...+...++|+.|+|++|.++
T Consensus        18 ~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          18 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             CCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCC
T ss_conf             986887689999898999999988841982574301589611