Citrus Sinensis ID: 005588

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------69
Protein Sequence
MSASLAPFERPRPGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESLHRCSISADSHVDNSGSEDSSDEENLDMKNNGYHDAQNEVDPESDDDPERAHSGKLSESSGYAGSDLYDYKALGGDDSDVGSPRNNNASAESSKLPIDPIQIGDPGDQVVEQQGKQKKGNENSITEMEVSSVLPAGESYHSMGEILSSVDPGHPLSVSGLESSAEKPVGKGTSSNFSAKRSAFWGRSNARKTSSVESIDSSGEEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKVCTDHKRFVSFLFLDLQLHKYL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccEEEEEccccccccEEEEEEEccEEEEEcccccccccccccccccccccccccccccccccccccccEEEEccccccEEEEEEccHHHHHHHHHHHHHHHHHcccHHHHccccccccccccccccccccccccccccccccccccHHHHccccccccHHHHHHHHHHHHcccccccEEcccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccEEEcccEEHEEccccccccccEEEEEEccEEEEEEcccccccccccccccccccEEcccccEEEcccccccEEEEEEccccccEEEEEcccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHccccccccccccHHHHHHHcccccHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHcHHcccccHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
msaslapferprpgasntvfksgplfisskgigwkswkKRWFILTRTSLvffkndpsalpqrggevnltlggidlnnsgsvvvredKKLLTvlfpdgrdgraftlkaetsEDLYEWKTALELALAQAPSaalvmghngifrndtndtiegsfhqwrdkrpvkslvvgRPILLaledidggpSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEqgktefsadedaHVIGDCVKHVlrelpsspvpasCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTIsshahenrmtpsaVAACMAPLllrpllageceleddfdmngdNSAQLLAAANAANNAQAIIATLLEEYenifddeslhrcsisadshvdnsgsedssdeenldmknngyhdaqnevdpesdddperahsgklsessgyagsdlydykalggddsdvgsprnnnasaessklpidpiqigdpgdQVVEQQgkqkkgnensitemevssvlpagesyhsmgeilssvdpghplsvsglessaekpvgkgtssnfsakrsafwgrsnarktssvesidssgeEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLsmssgqfsssrgmdskvctdhKRFVSFLFLDLQLHKYL
Flexible Loop (DISEMBL)
msaslapferprpgasntvfksgplfisskgigwkswkKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLggidlnnsgsvvvredKKLLtvlfpdgrdgraftlkaetsEDLYEWKTALELALAQAPSAALVMGHNGIFRNDTNDTIEGsfhqwrdkrpvksLVVGRPILLAledidggpSFLEKALRFLEKFGTKVEGIlrqaadveevdRRVQEYEQgktefsadedaHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRsailetfpepnRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESLHRCSISadshvdnsgsedssDEENLDMKNNGYHDAQNEVDPESDDDPERAHsgklsessgyagSDLYDYKALGGDDSDVGSPRNNNASAESSKLPIDPIQIGDPGDQVVEQQGkqkkgnensitemEVSSVLPAGESYHSMGEILSSVDPGHPLSVSGlessaekpvgkgtssnfsakrsafwgrsnarktssvesidssgeeeLAIQRLEITKNDLRHRIAKEargnailqaSLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSmssgqfsssrgmDSKVCTDHKRFVSFlfldlqlhkyl
Low Complexity Region (SEG)
MSASLAPFERPRPGASNTVFKSGPLFisskgigwkswkkRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSaqllaaanaannaqaiiaTLLEEYENIFDDESLHRCSISADSHVdnsgsedssdeenldMKNNGYHDAQNEVDPESDDDPERAHSGKLSESSGYAGSDLYDYKALGGDDSDVGSPRNNNASAESSKLPIDPIQIGDPGDqvveqqgkqkkgnenSITEMEVSSVLPAGESYHSMGEILSSVDPGHPLSVSGLESSAEKPVGKGTSSNFSAKRSAFWGRSNARKTSSVESIDSSGEEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLsmssgqfsssrgmdsKVCTDHKRFVSFLFLDLQLHKYL
Disordered region (IsUnstruct)
******************VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVD****************EDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISS*******TPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESLHRC***********************************************************************************************************************************************************************************************************************************************************************************************VCTDHKRFVSFLFLDLQLH***
Disordered Region (DISOPRED)
************************LFISSKGIGWKSWKKRWFILTRTSLVFF***********************N***********KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALEL*******************************************VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYK**********MRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLL**********************AANAANNAQAIIATLLEEYENIFDDE**********************************************************************************************************************************************************************************************************************************************************************************************************RFVSFLFLDLQLHKY*
Disordered Region (DISEMBL)
***********RPGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESLHRCSIS*****************NLDMKNNGYHDAQN*********************SGYAGSDLYDYKALGGDDSDVGSPRNNNASAESSKLPIDPIQIGDPGD****************ITEMEVSSVLPAGESYHSMGEILSSVDPGHPLSV*****************NFSAKRSAFW*******************EELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMS*************VCTDHKRFVSFLFLDLQLHKYL
Disordered Region (DISPRO)
****************NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSAL*****EVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS*******************EGSFHQWRDKRPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD*************************************************************************************************************************************************************************************************************EELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSM***********DSKVCTDHKRFVSFLFLDLQLHKYL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSASLAPFERPRPGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESLHRCSISADSHVDNSGSEDSSDEENLDMKNNGYHDAQNEVDPESDDDPERAHSGKLSESSGYAGSDLYDYKALGGDDSDVGSPRNNNASAESSKLPIDPIQIGDPGDQVVEQQGKQKKGNENSITEMEVSSVLPAGESYHSMGEILSSVDPGHPLSVSGLESSAEKPVGKGTSSNFSAKRSAFWGRSNARKTSSVESIDSSGEEELAIQRLEITKNDLRHRIAKEARGNAILxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRAALEVGLSMSSGQFSSSRGMDSKVCTDHKRFVSFLFLDLQLHKYL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	689	2.2.26 [Sep-21-2011]
Q8N264	748	Rho GTPase-activating pro	yes	no	0.573	0.528	0.232	4e-15
Q8C4V1	747	Rho GTPase-activating pro	yes	no	0.535	0.493	0.225	6e-14
Q5U2Z7	748	Rho GTPase-activating pro	yes	no	0.564	0.520	0.223	8e-14
Q8BL80	702	Rho GTPase-activating pro	no	no	0.447	0.438	0.240	1e-13
Q91YM2	1499	Rho GTPase-activating pro	no	no	0.229	0.105	0.267	6e-13
P81128	1513	Rho GTPase-activating pro	yes	no	0.229	0.104	0.267	8e-13
P83509	1500	Rho GTPase-activating pro	no	no	0.229	0.105	0.260	9e-13
Q9NRY4	1499	Rho GTPase-activating pro	no	no	0.229	0.105	0.260	1e-12
Q9P2F6	1191	Rho GTPase-activating pro	no	no	0.319	0.184	0.262	8e-12
Q5ZMM3	475	Rho GTPase-activating pro	no	no	0.460	0.667	0.214	2e-11

>sp|Q8N264|RHG24_HUMAN Rho GTPase-activating protein 24 OS=Homo sapiens GN=ARHGAP24 PE=1 SV=2

 Score = 83.6 bits (205), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 111/477 (23%), Positives = 177/477 (37%), Gaps = 82/477 (17%)

Query: 9   ERPRPG-ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVN 67
           E P+ G       K G  ++  +G   K+W  RWF+L    L +FK++    P       
Sbjct: 9   ENPQQGQGRQNAIKCG--WLRKQGGFVKTWHTRWFVLKGDQLYYFKDEDETKP------- 59

Query: 68  LTLGGIDL--NNSGSVVVREDK--KLLTVLFPDGRDGR------AFTLKAETSEDLYEWK 117
             LG I L  N        E+   K L  + P G   R      ++ L A T  D+ +W 
Sbjct: 60  --LGTIFLPGNKVSEHPCNEENPGKFLFEVVPGGDRDRMTANHESYLLMASTQNDMEDWV 117

Query: 118 TALELALAQAPSAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPILLALEDI 177
            ++   +   P         GIF     DT+        +KR    L             
Sbjct: 118 KSIRRVIW-GPFGG------GIFGQKLEDTVR------YEKRYGNRL------------- 151

Query: 178 DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEFSADEDAHVIGD 236
              P  +E+ + F+ + G K EG+ R       V      ++ G K  F ++ D H +  
Sbjct: 152 --APMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAFDCGEKPSFDSNTDVHTVAS 209

Query: 237 CVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAI-LETFPEPNRRLLQRILR 295
            +K  LRELP   +P +     L   K+  KE        A  +++ P  N  LL+ I R
Sbjct: 210 LLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELAKQVKSLPVVNYNLLKYICR 269

Query: 296 MMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAAN 355
            +  + S++  N+M+   +A    P +LRP      ++ED            L       
Sbjct: 270 FLDEVQSYSGVNKMSVQNLATVFGPNILRP------KVEDP-----------LTIMEGTV 312

Query: 356 NAQAIIATLLEEYENIFDDESLHRCSISADSHVDNSGSEDSSDEENLDMKNNGYHDAQNE 415
             Q +++ ++          S H C    D+ +  S  +D     N   K       QN+
Sbjct: 313 VVQQLMSVMI----------SKHDCLFPKDAELQ-SKPQDGVSNNNEIQKKATMGQLQNK 361

Query: 416 VDPESDDDPERAHSGKLSESSGYAGSDLYDYKALGGDDSDVGSPRNNNASAESSKLP 472
            +  + D P R  S   SES   +  +     AL G  S   SP+N+    + S+ P
Sbjct: 362 ENNNTKDSPSRQCSWDKSESPQRSSMNNGSPTALSG--SKTNSPKNSVHKLDVSRSP 416

Rho GTPase-activating protein involved in cell polarity, cell morphology and cytoskeletal organization. Acts as a GTPase activator for the Rac-type GTPase by converting it to an inactive GDP-bound state. Controls actin remodeling by inactivating Rac downstream of Rho leading to suppress leading edge protrusion and promotes cell retraction to achieve cellular polarity. Able to suppress RAC1 and CDC42 activity in vitro. Overexpression induces cell rounding with partial or complete disruption of actin stress fibers and formation of membrane ruffles, lamellipodia, and filopodia. Isoform 2 is a vascular cell-specific GAP involved in modulation of angiogenesis.
Homo sapiens (taxid: 9606)

>sp|Q8C4V1|RHG24_MOUSE Rho GTPase-activating protein 24 OS=Mus musculus GN=Arhgap24 PE=2 SV=2

 Score = 79.7 bits (195), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 106/471 (22%), Positives = 181/471 (38%), Gaps = 102/471 (21%)

Query: 26  FISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE 85
           ++  +G   K+W  RWF+L    L +FK++    P         LG I L+  G+ V+  
Sbjct: 23  WLRKQGGFVKTWHTRWFVLKGDQLYYFKDEDETKP---------LGTIFLH--GNKVIEH 71

Query: 86  D------KKLLTVLFPDGRDGR------AFTLKAETSEDLYEWKTALELALAQAPSAALV 133
                   K L  + P G   R      ++ L A T  D+ +W  ++   +   P     
Sbjct: 72  PCNEENPGKFLFDVVPGGERDRMTANHESYLLMASTQNDMEDWVKSIRRVIW-GPFGG-- 128

Query: 134 MGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEK 193
               GIF     DT+        +KR    L                P  +E+ + F+ +
Sbjct: 129 ----GIFGQKLEDTVR------YEKRYGNRLA---------------PMLVEQCVDFIRQ 163

Query: 194 FGTKVEGILRQAADVEEVDRRVQEYEQG-KTEFSADEDAHVIGDCVKHVLRELPSSPVPA 252
            G K EG+ R       V      ++ G K  F ++ D H +   +K  LRELP   VP 
Sbjct: 164 RGLKEEGLFRLPGQANLVKELQDAFDCGEKPSFDSNTDVHTVASLLKLYLRELPEPVVPY 223

Query: 253 S------CCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHE 306
           +       C  LL       +EA +  +   + ++ P  N  LL+ I R +  + S++  
Sbjct: 224 AKYEDFLSCATLLSK----EEEAGVKELMKQV-KSLPVVNYNLLKYICRFLDEVQSYSGV 278

Query: 307 NRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLE 366
           N+M+   +A    P +LRP      ++ED            L         Q +++ ++ 
Sbjct: 279 NKMSAQNLATVFGPNILRP------KVEDP-----------LTIMEGTVVVQQLMSVMIS 321

Query: 367 EYENIFDDESLHRCSISADSHVDNSGSEDSSDEENLDMKNNGYHDA-----QNEVDPESD 421
           +++ +F  ++  +           S  +D  +  N    N+G+  A     QN+ +  + 
Sbjct: 322 KHDRLFPKDTEPQ-----------SKPQDGPNSNN----NDGHKKATMGQLQNKENNNTK 366

Query: 422 DDPERAHSGKLSESSGYAGSDLYDYKALGGDDSDVGSPRNNNASAESSKLP 472
           + P R  S    ES   +  D     AL G  S   SPRN+    + S+ P
Sbjct: 367 ESPVRRCSWDKPESPQRSSVDNGSPTALSG--SKTNSPRNSIHKLDISRSP 415

Rho GTPase-activating protein involved in cell polarity, cell morphology and cytoskeletal organization. Acts as a GTPase activator for the Rac-type GTPase by converting it to an inactive GDP-bound state. Controls actin remodeling by inactivating Rac downstream of Rho leading to suppress leading edge protrusion and promotes cell retraction to achieve cellular polarity. Able to suppress RAC1 and CDC42 activity in vitro. Overexpression induces cell rounding with partial or complete disruption of actin stress fibers and formation of membrane ruffles, lamellipodia, and filopodia. Isoform 2 is a vascular cell-specific GAP involved in modulation of angiogenesis.

Mus musculus (taxid: 10090)

>sp|Q5U2Z7|RHG24_RAT Rho GTPase-activating protein 24 OS=Rattus norvegicus GN=Arhgap24 PE=2 SV=2

 Score = 79.7 bits (195), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 108/483 (22%), Positives = 178/483 (36%), Gaps = 94/483 (19%)

Query: 9   ERPRPGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNL 68
           E P         K G  ++  +G   K+W  RWF+L    L +FK++    P        
Sbjct: 9   ENPHSQGRQNATKCG--WLRKQGGFVKTWHTRWFVLKGDQLHYFKDEDETKP-------- 58

Query: 69  TLGGIDLNNSGSVVVRED------KKLLTVLFPDGRDGR------AFTLKAETSEDLYEW 116
            LG I L   G+ V+          K L  + P G   R      ++ L A T  D+ +W
Sbjct: 59  -LGTIFL--PGNKVIEHPCNEESPGKFLFEVVPGGERDRMTANHESYLLMASTQNDMEDW 115

Query: 117 KTALELALAQAPSAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPILLALED 176
             ++   +   P         GIF     DT+        +KR    L            
Sbjct: 116 VKSIRRVIW-GPFGG------GIFGQKLEDTVR------YEKRYGNRLA----------- 151

Query: 177 IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEFSADEDAHVIG 235
               P  +E+ + F+ + G K EG+ R       V      ++ G K  F ++ D H + 
Sbjct: 152 ----PMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAFDCGEKPSFDSNTDVHTVA 207

Query: 236 DCVKHVLRELPSSPVPAS------CCTALLEAYKIDRKEARISAMRSAILETFPEPNRRL 289
             +K  LRELP   VP +       C  LL       +EA +  +   + ++ P  N  L
Sbjct: 208 SLLKLYLRELPEPVVPYAKYEDFLSCATLLSK----EEEAGVKELTKQV-KSLPVVNYNL 262

Query: 290 LQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLA 349
           L+ I R +  + S++  N+M+   +A    P +LRP      ++ED            L 
Sbjct: 263 LKYICRFLDEVQSYSGVNKMSAQNLATVFGPNILRP------KVEDP-----------LT 305

Query: 350 AANAANNAQAIIATLLEEYENIFDDESLHRCSISADSHVDNSGSEDSSDEENLDMKNNGY 409
                   Q +++ ++ +++ +F            D+   +   E  +   N   K    
Sbjct: 306 IMEGTVVVQQLMSVMISKHDRLF----------PKDTEPQSKPQEGPNSNNNDGHKKVTM 355

Query: 410 HDAQNEVDPESDDDPERAHSGKLSESSGYAGSDLYDYKALGGDDSDVGSPRNNNASAESS 469
              QN+ +  + + P R  S    ES   +  D     AL G  S   SPRN+    + S
Sbjct: 356 GQLQNKENNNTKESPVRRCSWDKPESPQRSSMDNGSPTALSG--SKTNSPRNSIHKLDVS 413

Query: 470 KLP 472
           + P
Sbjct: 414 RSP 416

Rho GTPase-activating protein involved in cell polarity, cell morphology and cytoskeletal organization. Acts as a GTPase activator for the Rac-type GTPase by converting it to an inactive GDP-bound state. Controls actin remodeling by inactivating Rac downstream of Rho leading to suppress leading edge protrusion and promotes cell retraction to achieve cellular polarity. Able to suppress RAC1 and CDC42 activity in vitro. Overexpression induces cell rounding with partial or complete disruption of actin stress fibers and formation of membrane ruffles, lamellipodia, and filopodia. Isoform 2 is a vascular cell-specific GAP involved in modulation of angiogenesis.

Rattus norvegicus (taxid: 10116)

>sp|Q8BL80|RHG22_MOUSE Rho GTPase-activating protein 22 OS=Mus musculus GN=Arhgap22 PE=1 SV=2

 Score = 79.0 bits (193), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 145/378 (38%), Gaps = 70/378 (18%)

Query: 13  PGASNTVFKSGPLFISSKGIGW--------KSWKKRWFILTRTSLVFFKNDPSALPQRGG 64
           PG      K GP+  +    GW        K+W++RWF+L    L ++K+   + PQ   
Sbjct: 32  PGRPLVPHKLGPVLKA----GWLRKQRSIMKNWQQRWFVLRGDQLFYYKDKDESKPQ--- 84

Query: 65  EVNLTLGGIDLNNSGSVVVREDK----KLLTVLFPDGRDGR--------AFTLKAETSED 112
                 G I L  +    +  D     K L  + P G   R        A  L A +  D
Sbjct: 85  ------GFISLQGTQVTELLPDPEDPGKHLFEITPGGATEREKVPANPEALLLMASSQRD 138

Query: 113 LYEWKTALELALAQAPSAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPILL 172
           + +W  A+   +  AP     +G  GIF     DT+    H  R   P  +         
Sbjct: 139 MEDWVQAIRRVI-WAP-----LG-RGIFGQRLEDTV----HHERKFGPRLA--------- 178

Query: 173 ALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEFSADEDA 231
                   P  +E+ + F+ + G   EG+ R       V      ++ G K  F +  D 
Sbjct: 179 --------PLLVEQCVDFIRERGLSEEGLFRMPGQANLVRDLQDSFDCGEKPLFDSTTDV 230

Query: 232 HVIGDCVKHVLRELPSSPVPASCCTALLE-AYKIDRKEARISAMRSAILETFPEPNRRLL 290
           H +   +K  LRELP   +P +     L  A  + + E   +   +  +   P+ N  LL
Sbjct: 231 HTVASLLKLYLRELPEPVIPFARYEDFLSCAQLLTKDEGEGTVELAKQVSNLPQANYNLL 290

Query: 291 QRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFD-MNGDNSAQLLA 349
           + I + +  + +H+  N+M+   +A    P +LRP      ++ED    M G +  Q L 
Sbjct: 291 RYICKFLDEVQAHSDVNKMSVQNLATVFGPNILRP------QIEDPVTIMEGTSLVQHLM 344

Query: 350 AANAANNAQAIIATLLEE 367
                 + Q   AT LEE
Sbjct: 345 TVLIRKHGQLFAATSLEE 362

Rho GTPase-activating protein involved in the signal transduction pathway that regulates endothelial cell capillary tube formation during angiogenesis. Acts as a GTPase activator for the RAC1 by converting it to an inactive GDP-bound state. Inhibits RAC1-dependent lamellipodia formation. May also play a role in transcription regulation via its interaction with VEZF1, by regulating activity of the endothelin-1 (EDN1) promoter.

Mus musculus (taxid: 10090)

>sp|Q91YM2|RHG35_MOUSE Rho GTPase-activating protein 35 OS=Mus musculus GN=Arhgap35 PE=1 SV=3

 Score = 76.6 bits (187), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 84/161 (52%), Gaps = 3/161 (1%)

Query: 167  GRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFS 226
            G P+   +      P F+E+ + ++E  G   EGI R + +  E++   ++++Q      
Sbjct: 1248 GVPLTTVVTPEKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDL 1307

Query: 227  ADEDAHV--IGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPE 284
            A++D  V  +   +K    ELP   VP S    L+EA+KI+ +E ++ A++  +L+ FP+
Sbjct: 1308 AEKDFTVNTVAGAMKSFFSELPDPLVPYSMQIDLVEAHKINDREQKLHALKE-VLKKFPK 1366

Query: 285  PNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRP 325
             N  + + ++  ++ +S +   N MT   ++ C  P L+RP
Sbjct: 1367 ENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLMRP 1407

Represses transcription of the glucocorticoid receptor by binding to the cis-acting regulatory sequence 5'-GAGAAAAGAAACTGGAGAAACTC-3'. May participate in the regulation of retinal development and degeneration. May transduce signals from p21-ras to the nucleus, acting via the ras GTPase-activating protein (GAP). May also act as a tumor suppressor.

Mus musculus (taxid: 10090)

>sp|P81128|RHG35_RAT Rho GTPase-activating protein 35 OS=Rattus norvegicus GN=Arhgap35 PE=1 SV=2

 Score = 76.3 bits (186), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 84/161 (52%), Gaps = 3/161 (1%)

Query: 167  GRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFS 226
            G P+   +      P F+E+ + ++E  G   EGI R + +  E++   ++++Q      
Sbjct: 1248 GVPLTTVVTPEKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDL 1307

Query: 227  ADEDAHV--IGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPE 284
            A++D  V  +   +K    ELP   VP S    L+EA+KI+ +E ++ A++  +L+ FP+
Sbjct: 1308 AEKDFTVNTVAGAMKSFFSELPDPLVPYSMQIDLVEAHKINDREQKLHALKE-VLKKFPK 1366

Query: 285  PNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRP 325
             N  + + ++  ++ +S +   N MT   ++ C  P L+RP
Sbjct: 1367 ENHEVFKYVISHLNRVSHNNKVNLMTSENLSICFWPTLMRP 1407

Represses transcription of the glucocorticoid receptor by binding to the cis-acting regulatory sequence 5'-GAGAAAAGAAACTGGAGAAACTC-3'. May transduce signals from p21-ras to the nucleus, acting via the ras GTPase-activating protein (GAP). May also act as a tumor suppressor.

Rattus norvegicus (taxid: 10116)

>sp|P83509|RHG35_CANFA Rho GTPase-activating protein 35 OS=Canis familiaris GN=ARHGAP35 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 84/161 (52%), Gaps = 3/161 (1%)

Query: 167  GRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFS 226
            G P+   +      P F+E+ + ++E  G   EGI R + +  E++   ++++Q      
Sbjct: 1249 GVPLTTVVTPEKPIPVFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDL 1308

Query: 227  ADEDAHV--IGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPE 284
            A++D  V  +   +K    ELP   VP +    L+EA+KI+ +E ++ A++  +L+ FP+
Sbjct: 1309 AEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKE-VLKKFPK 1367

Query: 285  PNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRP 325
             N  + + ++  ++ +S +   N MT   ++ C  P L+RP
Sbjct: 1368 ENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLMRP 1408

Represses transcription of the glucocorticoid receptor by binding to the cis-acting regulatory sequence 5'-GAGAAAAGAAACTGGAGAAACTC-3'. May participate in the regulation of retinal development and degeneration. May transduce signals from p21-ras to the nucleus, acting via the ras GTPase-activating protein (GAP). May also act as a tumor suppressor.

Canis familiaris (taxid: 9615)

>sp|Q9NRY4|RHG35_HUMAN Rho GTPase-activating protein 35 OS=Homo sapiens GN=ARHGAP35 PE=1 SV=3

 Score = 75.5 bits (184), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 84/161 (52%), Gaps = 3/161 (1%)

Query: 167  GRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFS 226
            G P+   +      P F+E+ + ++E  G   EGI R + +  E++   ++++Q      
Sbjct: 1248 GVPLTTVVTPEKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDL 1307

Query: 227  ADEDAHV--IGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPE 284
            A++D  V  +   +K    ELP   VP +    L+EA+KI+ +E ++ A++  +L+ FP+
Sbjct: 1308 AEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKE-VLKKFPK 1366

Query: 285  PNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRP 325
             N  + + ++  ++ +S +   N MT   ++ C  P L+RP
Sbjct: 1367 ENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLMRP 1407

Represses transcription of the glucocorticoid receptor by binding to the cis-acting regulatory sequence 5'-GAGAAAAGAAACTGGAGAAACTC-3'. May participate in the regulation of retinal development and degeneration. May transduce signals from p21-ras to the nucleus, acting via the ras GTPase-activating protein (GAP). May also act as a tumor suppressor.

Homo sapiens (taxid: 9606)

>sp|Q9P2F6|RHG20_HUMAN Rho GTPase-activating protein 20 OS=Homo sapiens GN=ARHGAP20 PE=1 SV=2

 Score = 72.8 bits (177), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 109/248 (43%), Gaps = 28/248 (11%)

Query: 178 DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSAD-EDAHVIGD 236
           D  P  +   L FL + G   +GI RQ+A+V+   R ++E      E   D E   VI  
Sbjct: 374 DNLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSC-RELKEKLNSGVEVHLDCESIFVIAS 432

Query: 237 CVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRM 296
            +K  LR +P S   +      +        E +I+ ++  +L+  P  N  LL+ +  +
Sbjct: 433 VLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQR-LLDQLPRANVVLLRYLFGV 491

Query: 297 MHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANN 356
           +H I  H+  N+MT   +A C+AP +L P  +   ELE++F                   
Sbjct: 492 LHNIEQHSSSNQMTAFNLAVCVAPSILWPPASSSPELENEF----------------TKK 535

Query: 357 AQAIIATLLEEYENIFDDE--SLHR-CSISADSHVDNSGSEDSSDEENLDMKNNGYHDAQ 413
              +I  L+E    IF +E  SL R  S+  D+       E++SD     + ++ Y   +
Sbjct: 536 VSLLIQFLIENCLRIFGEEITSLFREVSVRCDTR------ENASDISCFQLNDSSYDSLE 589

Query: 414 NEVDPESD 421
           NE++ + D
Sbjct: 590 NELNEDVD 597

GTPase activator for the Rho-type GTPases by converting them to an inactive GDP-bound state.

Homo sapiens (taxid: 9606)

>sp|Q5ZMM3|RHG15_CHICK Rho GTPase-activating protein 15 OS=Gallus gallus GN=ARHGAP15 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 152/397 (38%), Gaps = 80/397 (20%)

Query: 35  KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLG----GIDLNNSGSVVVREDKKLL 90
           K+W   W +LT   + F+K       ++    NL  G     +DL  +      E     
Sbjct: 101 KNWSTSWIVLTSRKMEFYKES-----KQPALANLKPGYKPECVDLCGAHIEWTPEKSSRK 155

Query: 91  TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGHNG------------ 138
            V       G  F L+++    + +W  A++ A+ + P        N             
Sbjct: 156 NVFQITTVSGNEFLLQSDIDFLILDWFHAIKNAIDRLPKERSCTSRNLEFKLRRSSSTEL 215

Query: 139 -------------------IFR-----NDTNDT--IEGSFHQWRDKRP----------VK 162
                              IFR     +D+ND   ++    ++  +RP          +K
Sbjct: 216 LNSLDTESKESKPEHRKSLIFRLNYSASDSNDRSRVKSRLKKFISRRPSLKTLQEKGLIK 275

Query: 163 SLVVGRPILLALEDIDGG-PSFLEKALRFLEKFGTKVEGILRQA---ADVEEVDRRVQEY 218
             + G  + L  E  +   P F+ + ++ +E+ G +V+GI R +   A ++++   V + 
Sbjct: 276 DQIFGSHLHLVCEHENSTVPQFVRQCIKAVERRGLEVDGIYRVSGNLATIQKLRFVVNQE 335

Query: 219 EQGKTEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAI 278
           E+   + S  ED HV+   +K   RELP    P       +EA KI     RI A+++ +
Sbjct: 336 EKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYCFFEQFVEAIKIQDNATRIKAVKT-L 394

Query: 279 LETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFD 338
           ++  P PN   ++ +   +  I++    N M+  ++     P LLRP    E E      
Sbjct: 395 VKKLPRPNYDTMKVLFEHLKKIAAKESVNLMSTQSLGIVFGPTLLRP----EKE------ 444

Query: 339 MNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE 375
             G+ +  +L           I+  +L EY  IF  E
Sbjct: 445 -TGNMAVHMLY-------QNQIVELMLSEYSKIFGSE 473

GTPase activator for the Rho-type GTPases by converting them to an inactive GDP-bound state.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	689
224105983	872	predicted protein [Populus trichocarpa]	0.959	0.758	0.885	0.0
296083863	886	unnamed protein product [Vitis vinifera]	0.968	0.752	0.862	0.0
359479285	884	PREDICTED: uncharacterized protein LOC10	0.965	0.752	0.860	0.0
224055297	876	predicted protein [Populus trichocarpa]	0.957	0.753	0.856	0.0
449442585	870	PREDICTED: uncharacterized protein LOC10	0.959	0.759	0.841	0.0
357493921	920	Rho GTPase-activating protein [Medicago	0.959	0.718	0.769	0.0
356499307	870	PREDICTED: uncharacterized protein LOC10	0.960	0.760	0.828	0.0
356554157	861	PREDICTED: uncharacterized protein LOC10	0.953	0.763	0.817	0.0
255570167	821	Rho GTPase activator, putative [Ricinus	0.885	0.742	0.858	0.0
414866883	831	TPA: hypothetical protein ZEAMMB73_19393	0.925	0.767	0.741	0.0

>gi|224105983|ref|XP_002314002.1| predicted protein [Populus trichocarpa] gi|222850410|gb|EEE87957.1| predicted protein [Populus trichocarpa]

 Score = 1129 bits (2919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 585/661 (88%), Positives = 613/661 (92%)

Query: 8   FERPRPGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVN 67
           FERPR G SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVN
Sbjct: 5   FERPRVGPSNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVN 64

Query: 68  LTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127
           LTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA
Sbjct: 65  LTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 124

Query: 128 PSAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPILLALEDIDGGPSFLEKA 187
           PS ALVM HNGIFRNDTN+ IEGSFHQWRDKRPVKSLVVGRPILLALEDIDGGPSFLEKA
Sbjct: 125 PSPALVMRHNGIFRNDTNEAIEGSFHQWRDKRPVKSLVVGRPILLALEDIDGGPSFLEKA 184

Query: 188 LRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRELPS 247
           LRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK EF  DEDAHV+GDCVKHVLRELPS
Sbjct: 185 LRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKNEFEPDEDAHVVGDCVKHVLRELPS 244

Query: 248 SPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHEN 307
           SPVPASCCTALLEAYKIDRKEARI+AMRSAI+ETFPEPNRRLLQRIL+MMHTISSHAHEN
Sbjct: 245 SPVPASCCTALLEAYKIDRKEARINAMRSAIVETFPEPNRRLLQRILKMMHTISSHAHEN 304

Query: 308 RMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367
           RM PSAVAACMAPLLLRPLLAGECELEDDFD NGDNSAQLLAAANAANNAQAII TLLEE
Sbjct: 305 RMNPSAVAACMAPLLLRPLLAGECELEDDFDFNGDNSAQLLAAANAANNAQAIITTLLEE 364

Query: 368 YENIFDDESLHRCSISADSHVDNSGSEDSSDEENLDMKNNGYHDAQNEVDPESDDDPERA 427
           YENIFDDE+LHRCSISADS ++NSGS+DS+D+EN+DMK NGYHDA+NEVD +SDDDPER 
Sbjct: 365 YENIFDDENLHRCSISADSRIENSGSDDSTDDENMDMKENGYHDAENEVDQDSDDDPERV 424

Query: 428 HSGKLSESSGYAGSDLYDYKALGGDDSDVGSPRNNNASAESSKLPIDPIQIGDPGDQVVE 487
            SGKLSESSG A SDLYDYKA GGDDSDVGSPR NNA AESS + +DP+Q  D   Q +E
Sbjct: 425 LSGKLSESSGSADSDLYDYKAFGGDDSDVGSPRTNNAPAESSNISVDPVQTRDSNAQPIE 484

Query: 488 QQGKQKKGNENSITEMEVSSVLPAGESYHSMGEILSSVDPGHPLSVSGLESSAEKPVGKG 547
           Q+ K KKGNENS  EM+VSSVLP GESY SMGEILSSVDP  P+ +SG+ESSAEK  GK 
Sbjct: 485 QKSKPKKGNENSANEMDVSSVLPTGESYRSMGEILSSVDPVSPMPISGVESSAEKSAGKV 544

Query: 548 TSSNFSAKRSAFWGRSNARKTSSVESIDSSGEEELAIQRLEITKNDLRHRIAKEARGNAI 607
            +SN + KRS FWGRSNARKT S+ES+DSSGEEELAIQRLEITKNDLRHRIAKEARGNAI
Sbjct: 545 AASNLNGKRSTFWGRSNARKTPSMESVDSSGEEELAIQRLEITKNDLRHRIAKEARGNAI 604

Query: 608 LQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSK 667
           LQASLERRKQALHERRLALEQDV+RLQEQLQAERDLRAALEVGLSMSSGQFSSS GMDSK
Sbjct: 605 LQASLERRKQALHERRLALEQDVARLQEQLQAERDLRAALEVGLSMSSGQFSSSHGMDSK 664

Query: 668 V 668
            
Sbjct: 665 T 665

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083863|emb|CBI24251.3| unnamed protein product [Vitis vinifera]

 Score = 1119 bits (2894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 576/668 (86%), Positives = 615/668 (92%), Gaps = 1/668 (0%)

Query: 1   MSASLAPFERPRPGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALP 60
           MSASLA  ERPR G S TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFK+DP+ALP
Sbjct: 1   MSASLAALERPRIGPSTTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKSDPNALP 60

Query: 61  QRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTAL 120
           QRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAE+SEDLY WKTAL
Sbjct: 61  QRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAESSEDLYGWKTAL 120

Query: 121 ELALAQAPSAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPILLALEDIDGG 180
           E ALAQAPSAALVMGHNGIFRNDT+DT+EGSF QWRDKR VKSLVVGRPILLALEDIDGG
Sbjct: 121 EQALAQAPSAALVMGHNGIFRNDTSDTMEGSFCQWRDKRTVKSLVVGRPILLALEDIDGG 180

Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKH 240
           PSFLEKALRFLEKFG KVEGILRQ+ADVEEVDRRVQEYEQGKTEF ADEDAHV+GDCVKH
Sbjct: 181 PSFLEKALRFLEKFGIKVEGILRQSADVEEVDRRVQEYEQGKTEFGADEDAHVVGDCVKH 240

Query: 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTI 300
           VLRELPSSPVPASCCTALLEAYKIDRK+AR+SAMRSAILETFPEPNRRLLQRIL+MMH I
Sbjct: 241 VLRELPSSPVPASCCTALLEAYKIDRKDARVSAMRSAILETFPEPNRRLLQRILKMMHAI 300

Query: 301 SSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAI 360
           SSHA ENRMTP AVAACMAPLLLRPLLAGECELEDDFDMNGD+SAQLLAAANAANNAQAI
Sbjct: 301 SSHASENRMTPPAVAACMAPLLLRPLLAGECELEDDFDMNGDSSAQLLAAANAANNAQAI 360

Query: 361 IATLLEEYENIFDDESLHRCSISADSHVDNSGSEDSSDEENLDMKNNGYHDAQNEVDPES 420
           I TLLEEYENIFDD++LHRCSISADS ++NSGSEDS+D+EN+DM++NGYHDA+NEVDP++
Sbjct: 361 ITTLLEEYENIFDDDNLHRCSISADSRIENSGSEDSTDDENIDMRDNGYHDAENEVDPDT 420

Query: 421 DDDPERAHSGKLSESSGYAGSDLYDYKALGGDDSDVGSPRNNNASAESSKLPIDPIQIGD 480
           +DDPER HSGKLSESSGYAGSDLYDYKA G DDSDVGSP +N AS  +S L +D   + D
Sbjct: 421 EDDPERVHSGKLSESSGYAGSDLYDYKAFGVDDSDVGSPTDNRASEVNSNL-LDSQPVRD 479

Query: 481 PGDQVVEQQGKQKKGNENSITEMEVSSVLPAGESYHSMGEILSSVDPGHPLSVSGLESSA 540
              Q++EQQ KQ KG+E+ I EM+  S+LPA ES  SMGEIL+S+DPG PL VSGLESSA
Sbjct: 480 SNIQIIEQQDKQNKGSESPINEMDSPSILPAVESQRSMGEILASMDPGLPLPVSGLESSA 539

Query: 541 EKPVGKGTSSNFSAKRSAFWGRSNARKTSSVESIDSSGEEELAIQRLEITKNDLRHRIAK 600
           EK VGK TSSN + KRS FWGRS ARKT S ES+DSSGEEELAIQRLEITKNDLRHRIAK
Sbjct: 540 EKAVGKLTSSNPNGKRSTFWGRSTARKTPSTESVDSSGEEELAIQRLEITKNDLRHRIAK 599

Query: 601 EARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSS 660
           EARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSM SGQFS+
Sbjct: 600 EARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMPSGQFSN 659

Query: 661 SRGMDSKV 668
           SRGMDSK 
Sbjct: 660 SRGMDSKT 667

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479285|ref|XP_002276277.2| PREDICTED: uncharacterized protein LOC100246624 [Vitis vinifera]

 Score = 1113 bits (2879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 575/668 (86%), Positives = 614/668 (91%), Gaps = 3/668 (0%)

Query: 1   MSASLAPFERPRPGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALP 60
           MSASLA  ERPR G S TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFK+DP+ALP
Sbjct: 1   MSASLAALERPRIGPSTTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKSDPNALP 60

Query: 61  QRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTAL 120
           QRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAE+SEDLY WKTAL
Sbjct: 61  QRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAESSEDLYGWKTAL 120

Query: 121 ELALAQAPSAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPILLALEDIDGG 180
           E ALAQAPSAALVMGHNGIFRNDT+DT+EGSF  WRDKR VKSLVVGRPILLALEDIDGG
Sbjct: 121 EQALAQAPSAALVMGHNGIFRNDTSDTMEGSF--WRDKRTVKSLVVGRPILLALEDIDGG 178

Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKH 240
           PSFLEKALRFLEKFG KVEGILRQ+ADVEEVDRRVQEYEQGKTEF ADEDAHV+GDCVKH
Sbjct: 179 PSFLEKALRFLEKFGIKVEGILRQSADVEEVDRRVQEYEQGKTEFGADEDAHVVGDCVKH 238

Query: 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTI 300
           VLRELPSSPVPASCCTALLEAYKIDRK+AR+SAMRSAILETFPEPNRRLLQRIL+MMH I
Sbjct: 239 VLRELPSSPVPASCCTALLEAYKIDRKDARVSAMRSAILETFPEPNRRLLQRILKMMHAI 298

Query: 301 SSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAI 360
           SSHA ENRMTP AVAACMAPLLLRPLLAGECELEDDFDMNGD+SAQLLAAANAANNAQAI
Sbjct: 299 SSHASENRMTPPAVAACMAPLLLRPLLAGECELEDDFDMNGDSSAQLLAAANAANNAQAI 358

Query: 361 IATLLEEYENIFDDESLHRCSISADSHVDNSGSEDSSDEENLDMKNNGYHDAQNEVDPES 420
           I TLLEEYENIFDD++LHRCSISADS ++NSGSEDS+D+EN+DM++NGYHDA+NEVDP++
Sbjct: 359 ITTLLEEYENIFDDDNLHRCSISADSRIENSGSEDSTDDENIDMRDNGYHDAENEVDPDT 418

Query: 421 DDDPERAHSGKLSESSGYAGSDLYDYKALGGDDSDVGSPRNNNASAESSKLPIDPIQIGD 480
           +DDPER HSGKLSESSGYAGSDLYDYKA G DDSDVGSP +N AS  +S L +D   + D
Sbjct: 419 EDDPERVHSGKLSESSGYAGSDLYDYKAFGVDDSDVGSPTDNRASEVNSNL-LDSQPVRD 477

Query: 481 PGDQVVEQQGKQKKGNENSITEMEVSSVLPAGESYHSMGEILSSVDPGHPLSVSGLESSA 540
              Q++EQQ KQ KG+E+ I EM+  S+LPA ES  SMGEIL+S+DPG PL VSGLESSA
Sbjct: 478 SNIQIIEQQDKQNKGSESPINEMDSPSILPAVESQRSMGEILASMDPGLPLPVSGLESSA 537

Query: 541 EKPVGKGTSSNFSAKRSAFWGRSNARKTSSVESIDSSGEEELAIQRLEITKNDLRHRIAK 600
           EK VGK TSSN + KRS FWGRS ARKT S ES+DSSGEEELAIQRLEITKNDLRHRIAK
Sbjct: 538 EKAVGKLTSSNPNGKRSTFWGRSTARKTPSTESVDSSGEEELAIQRLEITKNDLRHRIAK 597

Query: 601 EARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSS 660
           EARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSM SGQFS+
Sbjct: 598 EARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMPSGQFSN 657

Query: 661 SRGMDSKV 668
           SRGMDSK 
Sbjct: 658 SRGMDSKT 665

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055297|ref|XP_002298467.1| predicted protein [Populus trichocarpa] gi|222845725|gb|EEE83272.1| predicted protein [Populus trichocarpa]

 Score = 1111 bits (2873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 565/660 (85%), Positives = 612/660 (92%)

Query: 9   ERPRPGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNL 68
           ERPR G SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNL
Sbjct: 10  ERPRAGPSNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNL 69

Query: 69  TLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAP 128
           TLGGIDLNN+GSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALE AL+QAP
Sbjct: 70  TLGGIDLNNTGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALEHALSQAP 129

Query: 129 SAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPILLALEDIDGGPSFLEKAL 188
           SAALV+GHN +F++DTN+ +EGSFHQWRDK PVKS+VVGRPILLALEDIDGGPSFLEKAL
Sbjct: 130 SAALVIGHNRVFQSDTNEAVEGSFHQWRDKHPVKSMVVGRPILLALEDIDGGPSFLEKAL 189

Query: 189 RFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRELPSS 248
           RFLEKFGTKVEGILRQ+ADVEEVD RVQEYEQGKTEF +DEDAHV+GDCVKHVLRELPSS
Sbjct: 190 RFLEKFGTKVEGILRQSADVEEVDHRVQEYEQGKTEFESDEDAHVVGDCVKHVLRELPSS 249

Query: 249 PVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENR 308
           PVPASCCTALLEAYKIDRKEARI+AMRSAI+ETFPEPNRRLLQRIL+MMHTISSHAHENR
Sbjct: 250 PVPASCCTALLEAYKIDRKEARINAMRSAIVETFPEPNRRLLQRILKMMHTISSHAHENR 309

Query: 309 MTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEY 368
           M PSAVAACMAPLLLRPLLAGECELEDDFD+NGDNSAQLLAAANAANNAQAII TLLEEY
Sbjct: 310 MNPSAVAACMAPLLLRPLLAGECELEDDFDVNGDNSAQLLAAANAANNAQAIITTLLEEY 369

Query: 369 ENIFDDESLHRCSISADSHVDNSGSEDSSDEENLDMKNNGYHDAQNEVDPESDDDPERAH 428
           ENIFDDE+LHRCSISADS ++NS S+DSSD+EN+DMK+NGYHDA+NEVD ++D+DPERA 
Sbjct: 370 ENIFDDENLHRCSISADSQIENSASDDSSDDENMDMKDNGYHDAENEVDQDTDNDPERAL 429

Query: 429 SGKLSESSGYAGSDLYDYKALGGDDSDVGSPRNNNASAESSKLPIDPIQIGDPGDQVVEQ 488
           SGKLSE+SG A SDLYDYKA GGDDSD+GSPR NNA AESS + +DP+Q+ D   Q++ Q
Sbjct: 430 SGKLSETSGSASSDLYDYKAFGGDDSDIGSPRTNNAPAESSNISVDPVQMRDSNAQLIGQ 489

Query: 489 QGKQKKGNENSITEMEVSSVLPAGESYHSMGEILSSVDPGHPLSVSGLESSAEKPVGKGT 548
           Q K KKGNENS +EM+ SSVLP GESY SMG IL+S DP  P+ +SGLESSAEK  GK +
Sbjct: 490 QSKPKKGNENSTSEMDASSVLPIGESYQSMGAILASADPVSPILISGLESSAEKSAGKVS 549

Query: 549 SSNFSAKRSAFWGRSNARKTSSVESIDSSGEEELAIQRLEITKNDLRHRIAKEARGNAIL 608
           +SN + KRS FWGRSNARKT S+ES+DSS EEE AIQRLEI KNDLRHRIAKEARGNAIL
Sbjct: 550 ASNLNGKRSTFWGRSNARKTPSMESVDSSAEEEFAIQRLEIAKNDLRHRIAKEARGNAIL 609

Query: 609 QASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKV 668
           QASLERRKQALHERRLALEQDV+RLQEQLQAERDLRAALEVGLSMSSGQFS+SRGMDSK 
Sbjct: 610 QASLERRKQALHERRLALEQDVARLQEQLQAERDLRAALEVGLSMSSGQFSNSRGMDSKT 669

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442585|ref|XP_004139062.1| PREDICTED: uncharacterized protein LOC101220273 [Cucumis sativus]

 Score = 1098 bits (2839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 562/668 (84%), Positives = 614/668 (91%), Gaps = 7/668 (1%)

Query: 1   MSASLAPFERPRPGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALP 60
           MSASLA FERPR GASNTVFKSGPLFISSKG+GWKSWKKRWFILTRTSLVFFKNDPSALP
Sbjct: 1   MSASLAAFERPRAGASNTVFKSGPLFISSKGLGWKSWKKRWFILTRTSLVFFKNDPSALP 60

Query: 61  QRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTAL 120
           QRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETS+DL+EWKTAL
Sbjct: 61  QRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSDDLFEWKTAL 120

Query: 121 ELALAQAPSAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPILLALEDIDGG 180
           E ALAQAPSAALVMGHNGIFR+DTND I+ SFH WRDKRPVKSLVVGRPILLALEDIDGG
Sbjct: 121 EQALAQAPSAALVMGHNGIFRSDTNDKIDSSFHPWRDKRPVKSLVVGRPILLALEDIDGG 180

Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKH 240
           PSFLEKALRFLE FGTKVEGILRQ+ADVEEVDRRVQEYEQGKTEF +DEDAHVIGDC+KH
Sbjct: 181 PSFLEKALRFLETFGTKVEGILRQSADVEEVDRRVQEYEQGKTEFGSDEDAHVIGDCIKH 240

Query: 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTI 300
           +LRELPSSPVPASCCTALLEAYKIDRKEARI+AMRS+ILETFPEPNRRLLQR+L+MMHTI
Sbjct: 241 ILRELPSSPVPASCCTALLEAYKIDRKEARINAMRSSILETFPEPNRRLLQRVLKMMHTI 300

Query: 301 SSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAI 360
           SSHAHENRMTPSAVAACMAPLLLRPLLAGECELED+FD++GDNSAQLLAAANAANNAQAI
Sbjct: 301 SSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDEFDVSGDNSAQLLAAANAANNAQAI 360

Query: 361 IATLLEEYENIFDDESLHRCSISADSHVDNSGSEDSSDEENLDMKNNGYHDAQNEVDPES 420
           + TLLEE+ENIFDDE+LHRCSISADS ++NSGS+DS+D+ENLD+K NGYH+ +N VDP++
Sbjct: 361 VTTLLEEFENIFDDENLHRCSISADSQIENSGSDDSTDDENLDVKGNGYHNVENGVDPDT 420

Query: 421 DDDPERAHSGKLSESSGYAGSDLYDYKALGGDDSDVGSPRNNNASAESSKLPIDPIQIGD 480
           DDDPER  SGKLSESSGYAGSDLYDYKA GGDDSDVGSPR N+  A+SS   +D  +  +
Sbjct: 421 DDDPERVLSGKLSESSGYAGSDLYDYKAFGGDDSDVGSPRENHDLAQSSNSCLDHHKNSE 480

Query: 481 PGDQVVEQQGKQKKGNENSITEMEVSSVLPAGESYHSMGEILSSVDPGHPLSVSGLESSA 540
              Q +    KQKKGN NS+TE+E  ++  AGESY SMGEIL+S+DPG+       ESS+
Sbjct: 481 TNVQPIGDLTKQKKGNANSLTEVETPNISLAGESYRSMGEILNSMDPGN-------ESSS 533

Query: 541 EKPVGKGTSSNFSAKRSAFWGRSNARKTSSVESIDSSGEEELAIQRLEITKNDLRHRIAK 600
            KPVGK +SSN +AKRS FWGRS+ARKT S+ES+DSSGEEELAIQRLE+TKNDL+ RIAK
Sbjct: 534 GKPVGKVSSSNINAKRSTFWGRSSARKTPSIESVDSSGEEELAIQRLEMTKNDLQQRIAK 593

Query: 601 EARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSS 660
           EARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQF++
Sbjct: 594 EARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFNN 653

Query: 661 SRGMDSKV 668
           SRGMDSK 
Sbjct: 654 SRGMDSKT 661

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493921|ref|XP_003617249.1| Rho GTPase-activating protein [Medicago truncatula] gi|355518584|gb|AET00208.1| Rho GTPase-activating protein [Medicago truncatula]

 Score = 1035 bits (2676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/719 (76%), Positives = 601/719 (83%), Gaps = 58/719 (8%)

Query: 1   MSASLAPFERPRPGASNTV----------------------------------------- 19
           MSASLA FERPRPGASNTV                                         
Sbjct: 1   MSASLAAFERPRPGASNTVTGSSPGNSLLYKKQGKAAYNTPIMVGPLPGPCVCGSFSAPG 60

Query: 20  -------FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGG 72
                  FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPS LPQRGGEVN+TLGG
Sbjct: 61  CPFKRKVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSTLPQRGGEVNMTLGG 120

Query: 73  IDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAAL 132
           IDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDL+EWKTALE ALAQAPSAAL
Sbjct: 121 IDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLFEWKTALEQALAQAPSAAL 180

Query: 133 VMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPILLALEDIDGGPSFLEKALRFLE 192
           VMGHNGIFRNDT D+I+GSFHQWRDKRPVKSLVVGRPILLALEDIDGGPSFLEKALRFLE
Sbjct: 181 VMGHNGIFRNDTTDSIDGSFHQWRDKRPVKSLVVGRPILLALEDIDGGPSFLEKALRFLE 240

Query: 193 KFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRELPSSPVPA 252
           K GTKVEGILRQ+ADVEEVDRRVQEYEQGK EF A+EDAHV+GDCVKHVLRELPSSPVPA
Sbjct: 241 KHGTKVEGILRQSADVEEVDRRVQEYEQGKVEFDAEEDAHVVGDCVKHVLRELPSSPVPA 300

Query: 253 SCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPS 312
           SCCTALLEAY+IDRKEARI+AMR AILETFPEPNRRLLQRIL+MMHTI+SH++ NRMT S
Sbjct: 301 SCCTALLEAYRIDRKEARINAMRCAILETFPEPNRRLLQRILKMMHTIASHSNVNRMTAS 360

Query: 313 AVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372
           AVAACMAPLLLRPLLAGECELED+FD++GD+SAQLLAAANAANNAQAII TLLEEYEN+F
Sbjct: 361 AVAACMAPLLLRPLLAGECELEDEFDVSGDSSAQLLAAANAANNAQAIITTLLEEYENVF 420

Query: 373 DDESLHRCSISADSHVDNSGSEDSSDEENLDMKNNGYHDAQNEVDPESDDDPERAHSGKL 432
           D+E++ RCSISADS V+NSGSEDS+D++N+D+K NGYHDA+NE D E+DDD +R HSGKL
Sbjct: 421 DEENIQRCSISADSRVENSGSEDSTDDDNIDVKENGYHDAENENDQETDDDADRVHSGKL 480

Query: 433 SESSGYAGSDLYDYK-ALGGDDSDVGSPRNNNASAESSKLPIDPIQIGDPGDQVVEQQGK 491
           SESSGYAGSDLYDYK A GGDDSDVGS  +N+A AE+S L         P   + E + K
Sbjct: 481 SESSGYAGSDLYDYKQAFGGDDSDVGSSTSNHAQAENSNLNT------VPDTHLSEDKSK 534

Query: 492 QKKGNENSITEMEVSSVLPAGESYHSMGEILSSVDPGHPLSVSGLESSAEKPVGKGTSS- 550
           Q+K NEN + + +   VLP+ ESY SMGEILSS+DPG+ L V   +S   K     TSS 
Sbjct: 535 QRKVNEN-VVDDDPPIVLPSTESYRSMGEILSSMDPGNHLPVIEAQSGTGKQTTGKTSSG 593

Query: 551 -NFSAKRSAFWGRSNARKTSSVESIDSSGEEELAIQRLEITKNDLRHRIAKEARGNAILQ 609
            +FS KRS FWGRSN RK+ SVES+DSSGEEELAIQRLEI KNDL+HRIAKEARGNAILQ
Sbjct: 594 TSFSTKRSTFWGRSNPRKSPSVESVDSSGEEELAIQRLEIAKNDLQHRIAKEARGNAILQ 653

Query: 610 ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKV 668
           ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQ S+SRGMDSK 
Sbjct: 654 ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQISNSRGMDSKT 712

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499307|ref|XP_003518483.1| PREDICTED: uncharacterized protein LOC100820132 [Glycine max]

 Score = 1013 bits (2618), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/669 (82%), Positives = 604/669 (90%), Gaps = 7/669 (1%)

Query: 1   MSASLAPFERPRPGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALP 60
           MSA LA FERPRPGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALP
Sbjct: 1   MSAPLAAFERPRPGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALP 60

Query: 61  QRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTAL 120
           QRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDL EWKTAL
Sbjct: 61  QRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLLEWKTAL 120

Query: 121 ELALAQAPSAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPILLALEDIDGG 180
           E AL QAPSAALVMGHNGIFR+D +D+IEGSFHQWRDKRP+KSLVVGRPILLALEDIDGG
Sbjct: 121 EQALTQAPSAALVMGHNGIFRSDASDSIEGSFHQWRDKRPIKSLVVGRPILLALEDIDGG 180

Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKH 240
           PSFLEKALRFLEK+GTKVEGILRQ+ADVEEVDRRVQEYEQGKTEF  +EDAHV+GDCVKH
Sbjct: 181 PSFLEKALRFLEKYGTKVEGILRQSADVEEVDRRVQEYEQGKTEFGPEEDAHVVGDCVKH 240

Query: 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTI 300
           VLRELPSSPVPASCCTALLEAYKIDRKEARI+AMR AILETFPEPNRRLLQRIL+MMHTI
Sbjct: 241 VLRELPSSPVPASCCTALLEAYKIDRKEARINAMRCAILETFPEPNRRLLQRILKMMHTI 300

Query: 301 SSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAI 360
            SH+ ENRMTPSAVAACMAPLLLRPLLAGECELED+FD +GD+SAQLLAAANAANNAQAI
Sbjct: 301 GSHSQENRMTPSAVAACMAPLLLRPLLAGECELEDEFDASGDSSAQLLAAANAANNAQAI 360

Query: 361 IATLLEEYENIFDDESLHRCSISADSHVDNSGSEDSSDEENLDMKNNGYHDAQNEVDPES 420
           I TLLEEYE+IFD+E++ RCS+SADS V+NSGSEDS+D++N+D+K NGYHDA+NEVD E+
Sbjct: 361 ITTLLEEYESIFDEENIQRCSMSADSRVENSGSEDSTDDDNIDVKENGYHDAENEVDQET 420

Query: 421 DDDPERAHSGKLSESSGYAGSDLYDYKALGGDDSDVGSPRNNNASAESSKLPIDPIQIGD 480
           DDD +R  SGKLSESSGYAGSDLYDYKA GGDDSDVGS  +N+A  E++ L   P     
Sbjct: 421 DDDADRVQSGKLSESSGYAGSDLYDYKAFGGDDSDVGSSSSNHAKTENANLNAVP---DT 477

Query: 481 PGDQVVEQQGKQKKGNENSITEMEVSSVLPAGESYHSMGEILSSVDPGHPLSVSGLESSA 540
           PG    E Q KQ+K +EN + E + S++LP+ ESY SMGEILSS+DP + L +  +ES +
Sbjct: 478 PGS---EDQNKQRKASENPVDENDASNLLPSSESYRSMGEILSSMDPSNHLPMPVIESGS 534

Query: 541 EKPVGKGTSSNFSAKRSAFWGRSNA-RKTSSVESIDSSGEEELAIQRLEITKNDLRHRIA 599
            K   K +S++FS+KRS FWGRSN  RKT SVES+DSSGEEELAIQRLEI KNDL+HRIA
Sbjct: 535 GKQTSKASSTSFSSKRSTFWGRSNQPRKTPSVESVDSSGEEELAIQRLEIAKNDLQHRIA 594

Query: 600 KEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS 659
           KEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQ S
Sbjct: 595 KEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQLS 654

Query: 660 SSRGMDSKV 668
           SSRGMDSK 
Sbjct: 655 SSRGMDSKT 663

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554157|ref|XP_003545415.1| PREDICTED: uncharacterized protein LOC100817923 [Glycine max]

 Score =  994 bits (2569), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 546/668 (81%), Positives = 599/668 (89%), Gaps = 11/668 (1%)

Query: 1   MSASLAPFERPRPGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALP 60
           MSA  A FERPRPGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALP
Sbjct: 1   MSAPSAAFERPRPGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALP 60

Query: 61  QRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTAL 120
           QRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDL EWKTAL
Sbjct: 61  QRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLLEWKTAL 120

Query: 121 ELALAQAPSAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPILLALEDIDGG 180
           E ALAQAPSAALVMGHNGIFR+D +D+IEG     RDKRP+KSLVVGRPILLALEDIDGG
Sbjct: 121 EQALAQAPSAALVMGHNGIFRSDASDSIEG-----RDKRPIKSLVVGRPILLALEDIDGG 175

Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKH 240
           PSFLEKAL+FLEK+GTKVEGILRQ+ADVEEVDRRVQEYEQGKTEF  +EDAHV+GDCVKH
Sbjct: 176 PSFLEKALQFLEKYGTKVEGILRQSADVEEVDRRVQEYEQGKTEFGPEEDAHVVGDCVKH 235

Query: 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTI 300
           VLRELPSSPVPASCCTALLEAYKIDRKEARI+AMR AILETFPEPNRRLLQRIL+MMHTI
Sbjct: 236 VLRELPSSPVPASCCTALLEAYKIDRKEARINAMRCAILETFPEPNRRLLQRILKMMHTI 295

Query: 301 SSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAI 360
            SH+ ENRMTPSA+AACMAPLLLRPLLAGECELED+FD +GD+SAQLLAAANAANNAQAI
Sbjct: 296 GSHSQENRMTPSAIAACMAPLLLRPLLAGECELEDEFDASGDSSAQLLAAANAANNAQAI 355

Query: 361 IATLLEEYENIFDDESLHRCSISADSHVDNSGSEDSSDEENLDMKNNGYHDAQNEVDPES 420
           I TLLEEYENIFD+E++ RCS+SADS V+NSGSEDS+D++N+D+K NGYHDA+NEVD E+
Sbjct: 356 ITTLLEEYENIFDEENIQRCSMSADSQVENSGSEDSTDDDNIDVKENGYHDAENEVDQET 415

Query: 421 DDDPERAHSGKLSESSGYAGSDLYDYKALGGDDSDVGSPRNNNASAESSKLPIDPIQIGD 480
           DDD +R  SGKLSESSGYAGSDLYDYKA GGDDSDVGS  +N+A  E++ L         
Sbjct: 416 DDDADRIQSGKLSESSGYAGSDLYDYKAFGGDDSDVGSSSSNHAKTENANLN------AV 469

Query: 481 PGDQVVEQQGKQKKGNENSITEMEVSSVLPAGESYHSMGEILSSVDPGHPLSVSGLESSA 540
           P   + E Q KQ+KG+EN + E + S++LP+ ESY SMGEILSS+DPG+ L +  +ES +
Sbjct: 470 PDTPLSEDQNKQRKGSENPVDENDASNLLPSTESYRSMGEILSSMDPGNHLPMPVIESGS 529

Query: 541 EKPVGKGTSSNFSAKRSAFWGRSNARKTSSVESIDSSGEEELAIQRLEITKNDLRHRIAK 600
            K   K +S++FS+KRS FWGRSN RKT SVES+DSSGEEELAIQRLEI K+DL+ RIAK
Sbjct: 530 GKQTSKASSASFSSKRSTFWGRSNPRKTPSVESVDSSGEEELAIQRLEIAKSDLQLRIAK 589

Query: 601 EARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSS 660
           EARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQ SS
Sbjct: 590 EARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQLSS 649

Query: 661 SRGMDSKV 668
           SRGMDSK 
Sbjct: 650 SRGMDSKT 657

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570167|ref|XP_002526044.1| Rho GTPase activator, putative [Ricinus communis] gi|223534625|gb|EEF36321.1| Rho GTPase activator, putative [Ricinus communis]

 Score =  988 bits (2553), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/614 (85%), Positives = 564/614 (91%), Gaps = 4/614 (0%)

Query: 57  SALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEW 116
           SALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEW
Sbjct: 3   SALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEW 62

Query: 117 KTALELALAQAPSAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPILLALED 176
           KTALE ALAQAPSAALVMGHNGIFR+DTN+  EGSFHQWRDKRPVKSLVVGRPILLALED
Sbjct: 63  KTALEHALAQAPSAALVMGHNGIFRSDTNEA-EGSFHQWRDKRPVKSLVVGRPILLALED 121

Query: 177 IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGD 236
           IDGGPSFLEKALRFLE+FGTKVEGILRQ+ADVEEV+RRVQEYEQGKT+F  DEDAHV+ D
Sbjct: 122 IDGGPSFLEKALRFLERFGTKVEGILRQSADVEEVERRVQEYEQGKTDFEPDEDAHVVAD 181

Query: 237 CVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRM 296
           CVKHVLRELPSSPVPASCCTALLEAYKIDRKEARI+AMRSAILETFPEPNRRLLQRIL+M
Sbjct: 182 CVKHVLRELPSSPVPASCCTALLEAYKIDRKEARINAMRSAILETFPEPNRRLLQRILKM 241

Query: 297 MHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANN 356
           MHT+SSHA+ENRMT SAVAACMAPLLLRPLLAGECELEDDFD NGD+SAQLLAAANAANN
Sbjct: 242 MHTVSSHANENRMTASAVAACMAPLLLRPLLAGECELEDDFDFNGDSSAQLLAAANAANN 301

Query: 357 AQAIIATLLEEYENIFDDESLHRCSISADSHVDNSGSEDSSDEENLDMKNNGYHDAQNEV 416
           AQAII TLLEEYENIFDDE+LHRCSISADS ++NSGS+ SSD+EN+D+K+NGYHDA+NEV
Sbjct: 302 AQAIITTLLEEYENIFDDENLHRCSISADSRIENSGSDYSSDDENMDIKDNGYHDAENEV 361

Query: 417 DPESDD--DPERAHSGKLSESSGYAGSDLYDYKALGGDDSDVGSPRNNNASAESSKLPID 474
           D E+DD  D ER  SGKLSESSGYAGSDLYDYKA GG DSDVGSPR+N ASAESS +P+ 
Sbjct: 362 DQETDDDADAERVLSGKLSESSGYAGSDLYDYKAFGGADSDVGSPRHNQASAESSSVPVG 421

Query: 475 PIQIGDPGDQVVEQQGKQKKGNENSITEMEVSSVLPAGESYHSMGEILSSVDPGHPLSVS 534
            +Q  +P  Q +EQ  K KKGNE  + EM+VSS LPAGESY SMGEILSS+DP   + + 
Sbjct: 422 SVQTKEPNIQPLEQPSKLKKGNETLVNEMDVSSALPAGESYRSMGEILSSMDPV-AIPIP 480

Query: 535 GLESSAEKPVGKGTSSNFSAKRSAFWGRSNARKTSSVESIDSSGEEELAIQRLEITKNDL 594
           GLESSAEKP GK  + N + KRS FWGRSNARKT SVES+DSSGEEELAIQRLEITKNDL
Sbjct: 481 GLESSAEKPAGKVATPNANGKRSTFWGRSNARKTPSVESVDSSGEEELAIQRLEITKNDL 540

Query: 595 RHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMS 654
           +HRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMS
Sbjct: 541 KHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMS 600

Query: 655 SGQFSSSRGMDSKV 668
           SGQFSSSRGMDSK 
Sbjct: 601 SGQFSSSRGMDSKT 614

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414866883|tpg|DAA45440.1| TPA: hypothetical protein ZEAMMB73_193936 [Zea mays]

 Score =  907 bits (2344), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/653 (74%), Positives = 543/653 (83%), Gaps = 15/653 (2%)

Query: 18  TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNN 77
           TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFK+DPS LPQRGGEVN+TLGGIDLNN
Sbjct: 29  TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKSDPSTLPQRGGEVNVTLGGIDLNN 88

Query: 78  SGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGHN 137
           SGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDL+EWKTALE ALAQAP+AALVMGHN
Sbjct: 89  SGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLFEWKTALEEALAQAPNAALVMGHN 148

Query: 138 GIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTK 197
           GIFRNDT DT EG+   WR+KRP+KSLV GRPILLALEDIDG PSFLEKALRFLEK G K
Sbjct: 149 GIFRNDTADTYEGAIPNWREKRPIKSLVTGRPILLALEDIDGSPSFLEKALRFLEKHGIK 208

Query: 198 VEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTA 257
           VEGILRQ+ADVEEVDRR+QEYEQG+TEFSADEDAHV+GDCVKHVLRELPSSPVPASCCTA
Sbjct: 209 VEGILRQSADVEEVDRRLQEYEQGRTEFSADEDAHVVGDCVKHVLRELPSSPVPASCCTA 268

Query: 258 LLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317
           LLEA++++ K+ARI+AMRSAI ETFPEPNRRLLQRIL+MMHT++SH  ENRMT SAVAAC
Sbjct: 269 LLEAFRLETKDARINAMRSAISETFPEPNRRLLQRILKMMHTVASHTSENRMTASAVAAC 328

Query: 318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESL 377
           MAPLLLRPLLAGECE+++ FDM+GD+SAQLLAAANAAN+AQ I+ATLLEEYE IF DE L
Sbjct: 329 MAPLLLRPLLAGECEMDEVFDMDGDDSAQLLAAANAANSAQGIVATLLEEYEGIFHDEHL 388

Query: 378 HRCSISADSHVDNSGSEDSSDEENLDMKNNGYHDAQNEVDPESDDDP--ERAHSGKLSES 435
            RCS+S +S +++SG+E S+D+ NL+ K NG+HDA+N+VD E DDD   ER  SGKLSES
Sbjct: 389 -RCSLSPESQIEDSGTEASTDDGNLEAKGNGFHDAENDVDQEMDDDNGVERILSGKLSES 447

Query: 436 SGYAGSDLYDYKALGGDDSDVGSPRNNNASAESSKLPIDPIQIGDPGDQVVEQQGKQKKG 495
           SGYAGSDLYDYKA+  ++SD   P          K+    + +    + +  + G     
Sbjct: 448 SGYAGSDLYDYKAVNAEESDAERP---------VKMLEGNLNLSKVQNSLSTENG---SA 495

Query: 496 NENSITEMEVSSVLPAGESYHSMGEILSSVDPGHPLSVSGLESSAEKPVGKGTSSNFSAK 555
           N +S+      S    G    SMGEILSS DPG  +     E S E+   K   S+   K
Sbjct: 496 NVDSLLSENNPSNPTVGHETLSMGEILSSFDPGISVPTHSPEYSVERQTNKTNGSHPHVK 555

Query: 556 RSAFWGRSNARKTSSVESIDSSGEEELAIQRLEITKNDLRHRIAKEARGNAILQASLERR 615
           RS FWGR+NARK  + ES+DSSGEEELAIQRLEI KNDL++RIAKEARGNAILQASLERR
Sbjct: 556 RSNFWGRNNARKGQNSESVDSSGEEELAIQRLEIAKNDLQNRIAKEARGNAILQASLERR 615

Query: 616 KQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKV 668
           KQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSS+R MD K 
Sbjct: 616 KQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSARSMDVKT 668

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	689
TAIR|locus:2150265	870	AT5G19390 [Arabidopsis thalian	0.930	0.736	0.677	8.5e-223
TAIR|locus:2176992	827	AT5G12150 [Arabidopsis thalian	0.677	0.564	0.684	2e-221
ZFIN|ZDB-GENE-090313-87	698	arhgap22 "Rho GTPase activatin	0.210	0.207	0.265	3.8e-13
UNIPROTKB|E2RFM4	749	ARHGAP24 "Uncharacterized prot	0.210	0.193	0.272	6e-13
UNIPROTKB|D4A814	312	D4A814 "Uncharacterized protei	0.208	0.461	0.272	7e-12
UNIPROTKB|Q8N264	748	ARHGAP24 "Rho GTPase-activatin	0.210	0.193	0.272	1.2e-11
UNIPROTKB|H9KZU2	1494	ARHGAP35 "Uncharacterized prot	0.208	0.096	0.278	1.6e-11
ZFIN|ZDB-GENE-060526-44	1530	arhgap35 "Rho GTPase activatin	0.240	0.108	0.272	3.5e-11
MGI|MGI:1929494	1499	Grlf1 "glucocorticoid receptor	0.208	0.096	0.272	9.2e-11
UNIPROTKB|E1B801	1500	ARHGAP35 "Uncharacterized prot	0.236	0.108	0.253	1.5e-10

TAIR|locus:2150265 AT5G19390 [Arabidopsis thaliana (taxid:3702)]

 Score = 2151 (762.2 bits), Expect = 8.5e-223, P = 8.5e-223
 Identities = 442/652 (67%), Positives = 499/652 (76%)

Query:     1 MSASLAPFERPRPGASNTVFKSGPLFXXXXXXXXXXXXXRWFILTRTSLVFFKNDPSALP 60
             M ASLA  ERPR  ASNTVFKSGPLF             RWFILTRTSLVFFKNDP  LP
Sbjct:     1 MEASLAALERPRGSASNTVFKSGPLFISSKGLGWTSWKKRWFILTRTSLVFFKNDPGTLP 60

Query:    61 QRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTAL 120
             Q+GGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAET EDLYEWKTAL
Sbjct:    61 QKGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETFEDLYEWKTAL 120

Query:   121 ELALAQAPSAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPILLALEDIDGG 180
             E ALAQAP+AAL+MG NGIFR +TN+ IEG     R+KRP+KSLVVGRPILLALEDIDG 
Sbjct:   121 EQALAQAPNAALIMGQNGIFRAETNEAIEG-----REKRPLKSLVVGRPILLALEDIDGS 175

Query:   181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKH 240
             PSFLEKAL+F+EK+GTK+EGILRQ+ADVEEV+RRVQEYEQGKTEF+ DED HV+GDC+KH
Sbjct:   176 PSFLEKALQFIEKYGTKIEGILRQSADVEEVERRVQEYEQGKTEFTFDEDPHVVGDCIKH 235

Query:   241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTI 300
             VLRELPSSPV ASCCTALLEAY+I+ KEARIS++RSAI ETFPEPNRRLLQRIL+MMHTI
Sbjct:   236 VLRELPSSPVSASCCTALLEAYRIESKEARISSLRSAIAETFPEPNRRLLQRILKMMHTI 295

Query:   301 SSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSXXXXXXXXXXXXXXXX 360
             SSH+HENRM P+AVAACMAPLLLRPLLAGEC+LEDDFD   DNS                
Sbjct:   296 SSHSHENRMNPNAVAACMAPLLLRPLLAGECDLEDDFDGGEDNSAQLLAAANAANNAQAI 355

Query:   361 XXTLLEEYENIFDDESLHRCSISADSHVXXXXXXXXXXXXXXXMKNNGYHDAQNEVDPES 420
                LLE+Y +IFD+E++ RCSIS +SH+               MKN GYH+A NEV+P +
Sbjct:   356 ITVLLEDYGSIFDEENIQRCSISTESHIGNSGPDDSSDDDNN-MKN-GYHNADNEVEPVT 413

Query:   421 DDDPERAHSGKLSESSGYAGSDLYDYKALGGDDSDVGSPRNNNASAESSKLPIDPIQIGD 480
             DDD +RA SGK+SESSG  GSDLY+YK    DDSD+ SPR+ N    +S +  D + + +
Sbjct:   414 DDDNDRALSGKMSESSGCTGSDLYEYKGFVADDSDIESPRDTNGPRCNSNIRTDHL-MRN 472

Query:   481 PGDXXXXXXXXXXXXXXXSITEMEVSSVLP-AGESYHSMGEILSSVDPGHPLSVSGLESS 539
             P                   T+  V+S L    ESY   G  L+    G+ L+  GLES 
Sbjct:   473 P--FVNSTDQQAGEQIGDDPTKYGVNSCLAHVSESYQQSGTGLNVPTHGNTLAAPGLESP 530

Query:   540 AEKPVGKGTSSNFSAKRSAFWGRSNARKTSSVESIDSSGEEELAIQRLEITKNDLRHRIA 599
             + K V KGT S+  AKR+ FWGR +ARK S+  S DSSGE+ELAIQRLE TKN+LR RIA
Sbjct:   531 SAKSVNKGTPSSVHAKRATFWGRGSARKISTDGSFDSSGEDELAIQRLETTKNELRQRIA 590

Query:   600 KEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651
             KEARGNAILQASLERRKQALHERRL+LEQDVSRLQEQLQAERDLRAALEVGL
Sbjct:   591 KEARGNAILQASLERRKQALHERRLSLEQDVSRLQEQLQAERDLRAALEVGL 642

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0035091 "phosphatidylinositol binding" evidence=ISS

GO:0005100 "Rho GTPase activator activity" evidence=ISS

TAIR|locus:2176992 AT5G12150 [Arabidopsis thaliana (taxid:3702)]

 Score = 1617 (574.3 bits), Expect = 2.0e-221, Sum P(2) = 2.0e-221
 Identities = 321/469 (68%), Positives = 367/469 (78%)

Query:     1 MSASLAPFERPRPGASNTVFKSGPLFXXXXXXXXXXXXXRWFILTRTSLVFFKNDPSALP 60
             M ASLA  +RP+ GASNTV+KSGPLF             RWFILTRTSLVFFKNDPSALP
Sbjct:     1 MEASLAVIQRPQAGASNTVYKSGPLFISSKGLGWTSWKKRWFILTRTSLVFFKNDPSALP 60

Query:    61 QRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTAL 120
             Q+GGEVNLTLGGIDLN+SGSVVVREDKKLLTVLFPDGRDGRAFTLKAET +DLYEWK AL
Sbjct:    61 QKGGEVNLTLGGIDLNSSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETLDDLYEWKAAL 120

Query:   121 ELALAQAPSAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPILLALEDIDGG 180
             E ALAQAP+AALV+G NGIFR + N+TIE SF+ WRD+RP+KS VVGRPILLALE+IDG 
Sbjct:   121 EQALAQAPNAALVIGQNGIFRTEANNTIEASFNSWRDQRPLKSSVVGRPILLALEEIDGS 180

Query:   181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKH 240
             PSFLEKAL+FLE +GTKVEGILRQ+ADVEEV+RRVQEYEQGKTEFS +ED HV+GDCVKH
Sbjct:   181 PSFLEKALQFLETYGTKVEGILRQSADVEEVERRVQEYEQGKTEFSPEEDPHVVGDCVKH 240

Query:   241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTI 300
             VLR+LPSSPVPASCCTALLEAYKID+ EAR++++RSAI+ETFPEPNRRLL R+L+MMHTI
Sbjct:   241 VLRQLPSSPVPASCCTALLEAYKIDQNEARVNSLRSAIIETFPEPNRRLLLRMLKMMHTI 300

Query:   301 SSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSXXXXXXXXXXXXXXXX 360
             +SH+ ENRMT SAVAACM+PLLLRPLLAGEC+LE  FD  GDNS                
Sbjct:   301 TSHSSENRMTSSAVAACMSPLLLRPLLAGECDLEG-FDTLGDNSAQLLAAANAANNAQAI 359

Query:   361 XXTLLEEYENIFDDESLHRCSISADSHVXXXXXXXXXXXXXXXMKNNGYHDAQNEVDPES 420
                LLE+Y N+ +DE L RCS S DSH+               +K+   H    E + E+
Sbjct:   360 VTALLEDYGNMINDEGLGRCSTSTDSHIGDSGPENSSDEEEIVVKHPDLHTLDIE-EGET 418

Query:   421 DDDPERAHSGKLSESSGYAGSDLYDYKALGGDDSDVGSPRNNNASAESS 469
             DDD +   S K SESS YAGSDLYDYK  G +DSD  SPR+ + S ES+
Sbjct:   419 DDDNDVLLSRKPSESSDYAGSDLYDYKGFGVEDSDAESPRDIHCSVEST 467

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA;ISS

GO:0035091 "phosphatidylinositol binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005100 "Rho GTPase activator activity" evidence=ISS

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

ZFIN|ZDB-GENE-090313-87 arhgap22 "Rho GTPase activating protein 22" [Danio rerio (taxid:7955)]

 Score = 160 (61.4 bits), Expect = 3.8e-13, Sum P(3) = 3.8e-13
 Identities = 39/147 (26%), Positives = 69/147 (46%)

Query:   181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEFSADEDAHVIGDCVK 239
             P  +E+ + F+ + G K EG+ R       V      ++ G K  F ++ D H +   +K
Sbjct:   176 PLLVEQCVDFIREQGLKEEGLFRMPGQANLVKELQDAFDCGDKPLFDSNTDVHTVASLLK 235

Query:   240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAI-LETFPEPNRRLLQRILRMMH 298
               LRELP   +P +     L   ++  K+  +        + T P+ N  LL+ I + + 
Sbjct:   236 LYLRELPEPVIPFNKYEDFLTCAQLLLKDEEMGLGELVKQVSTLPQANYNLLKYICKFLD 295

Query:   299 TISSHAHENRMTPSAVAACMAPLLLRP 325
              + SH++EN+M+   +A    P +LRP
Sbjct:   296 EVQSHSNENKMSVQNLATVFGPNILRP 322

GO:0005543 "phospholipid binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

UNIPROTKB|E2RFM4 ARHGAP24 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 155 (59.6 bits), Expect = 6.0e-13, Sum P(4) = 6.0e-13
 Identities = 40/147 (27%), Positives = 67/147 (45%)

Query:   181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEFSADEDAHVIGDCVK 239
             P  +E+ + F+ + G K EG+ R       V      ++ G K  F ++ D H +   +K
Sbjct:   153 PMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAFDCGEKPSFDSNTDVHTVASLLK 212

Query:   240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAI-LETFPEPNRRLLQRILRMMH 298
               LRELP   +P +     L   K+  KE        A  +++ P  N  LL+ I R + 
Sbjct:   213 LYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELAKQVKSLPVVNYNLLKYICRFLD 272

Query:   299 TISSHAHENRMTPSAVAACMAPLLLRP 325
              + S++  N+M+   +A    P +LRP
Sbjct:   273 EVQSYSGVNKMSVQNLATVFGPNILRP 299

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|D4A814 D4A814 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 187 (70.9 bits), Expect = 7.0e-12, P = 7.0e-12
 Identities = 40/147 (27%), Positives = 79/147 (53%)

Query:   181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADED--AHVIGDCV 238
             P F+E+ + ++E  G   EGI R + +  E++   ++++Q      A++D   + +   +
Sbjct:   100 PIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLGLAEKDFTVNTVAGAM 159

Query:   239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMH 298
             K    ELP   VP S    L+EA+KI  +E ++ A++  +L+ FP+ N  + + ++  ++
Sbjct:   160 KSFFSELPDPLVPYSMQIDLVEAHKIKDREQKLHALKE-VLKKFPKENHEVFKYVISHLN 218

Query:   299 TISSHAHENRMTPSAVAACMAPLLLRP 325
              +S +   N MT   ++ C  P L+RP
Sbjct:   219 RVSHNNKVNLMTSENLSICFWPTLMRP 245

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|Q8N264 ARHGAP24 "Rho GTPase-activating protein 24" [Homo sapiens (taxid:9606)]

 Score = 155 (59.6 bits), Expect = 1.2e-11, Sum P(4) = 1.2e-11
 Identities = 40/147 (27%), Positives = 67/147 (45%)

Query:   181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEFSADEDAHVIGDCVK 239
             P  +E+ + F+ + G K EG+ R       V      ++ G K  F ++ D H +   +K
Sbjct:   153 PMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAFDCGEKPSFDSNTDVHTVASLLK 212

Query:   240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAI-LETFPEPNRRLLQRILRMMH 298
               LRELP   +P +     L   K+  KE        A  +++ P  N  LL+ I R + 
Sbjct:   213 LYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELAKQVKSLPVVNYNLLKYICRFLD 272

Query:   299 TISSHAHENRMTPSAVAACMAPLLLRP 325
              + S++  N+M+   +A    P +LRP
Sbjct:   273 EVQSYSGVNKMSVQNLATVFGPNILRP 299

GO:0005543 "phospholipid binding" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=TAS

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|H9KZU2 ARHGAP35 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 196 (74.1 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 41/147 (27%), Positives = 80/147 (54%)

Query:   181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADED--AHVIGDCV 238
             P F+E+ + ++E  G   EGI R + +  E++   ++++Q  +   A++D   + +   +
Sbjct:  1255 PIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHSLDLAEKDFTVNTVAGAM 1314

Query:   239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMH 298
             K    ELP   VP S    L+EA+KI+ +E ++ A++  +L  FP+ N  + + ++  ++
Sbjct:  1315 KSFFSELPEPLVPYSMQVELVEAHKINDREQKLHALKE-VLRKFPKENYEVFKYVIGHLN 1373

Query:   299 TISSHAHENRMTPSAVAACMAPLLLRP 325
              +S H   N MT   ++ C  P L+RP
Sbjct:  1374 KVSHHHRVNLMTSENLSICFWPTLMRP 1400

GO:0007165 "signal transduction" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0043010 "camera-type eye development" evidence=IEA

GO:0043116 "negative regulation of vascular permeability" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

ZFIN|ZDB-GENE-060526-44 arhgap35 "Rho GTPase activating protein 35b" [Danio rerio (taxid:7955)]

 Score = 193 (73.0 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 46/169 (27%), Positives = 85/169 (50%)

Query:   159 RPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEY 218
             +P++S   G P++  +      P F++K +R++E  G   EGI R + +  E++   +++
Sbjct:  1255 KPLESNYFGVPLVNVVSFERPIPVFIDKCIRYIEATGLTTEGIYRVSGNKAEIEGMQRQF 1314

Query:   219 EQGKT-EF-SADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRS 276
             EQ    +F   D   + +   +K    ELP   VP S    L+EA+KI+ +E R+  M+ 
Sbjct:  1315 EQDHNLDFVEKDFTVNTVAGAMKSFFSELPDPLVPYSSQEELVEAFKINDREQRLHTMKD 1374

Query:   277 AILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRP 325
              +L  FP  N  + + ++  ++ +      N MT   ++ C  P L+RP
Sbjct:  1375 -VLRRFPRENFDVFKYVMSHLNKVGQWNRVNLMTSENLSICFWPTLMRP 1422

GO:0005525 "GTP binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

MGI|MGI:1929494 Grlf1 "glucocorticoid receptor DNA binding factor 1" [Mus musculus (taxid:10090)]

 Score = 189 (71.6 bits), Expect = 9.2e-11, P = 9.2e-11
 Identities = 40/147 (27%), Positives = 80/147 (54%)

Query:   181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADED--AHVIGDCV 238
             P F+E+ + ++E  G   EGI R + +  E++   ++++Q      A++D   + +   +
Sbjct:  1262 PIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGAM 1321

Query:   239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMH 298
             K    ELP   VP S    L+EA+KI+ +E ++ A++  +L+ FP+ N  + + ++  ++
Sbjct:  1322 KSFFSELPDPLVPYSMQIDLVEAHKINDREQKLHALKE-VLKKFPKENHEVFKYVISHLN 1380

Query:   299 TISSHAHENRMTPSAVAACMAPLLLRP 325
              +S +   N MT   ++ C  P L+RP
Sbjct:  1381 KVSHNNKVNLMTSENLSICFWPTLMRP 1407

GO:0001843 "neural tube closure" evidence=IMP

GO:0003677 "DNA binding" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=TAS

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007229 "integrin-mediated signaling pathway" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IDA

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0030900 "forebrain development" evidence=IMP

GO:0043010 "camera-type eye development" evidence=IMP

GO:0043116 "negative regulation of vascular permeability" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

UNIPROTKB|E1B801 ARHGAP35 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 187 (70.9 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 42/166 (25%), Positives = 86/166 (51%)

Query:   162 KSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG 221
             +S   G P+   +      P F+E+ + ++E  G   EGI R + +  E++   ++++Q 
Sbjct:  1244 ESTYFGVPLTTVVTPEKPIPVFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQD 1303

Query:   222 KTEFSADED--AHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAIL 279
                  A++D   + +   +K    ELP   VP +    L+EA+KI+ +E ++ A++  +L
Sbjct:  1304 HNLDLAEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKE-VL 1362

Query:   280 ETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRP 325
             + FP+ N  + + ++  ++ +S +   N MT   ++ C  P L+RP
Sbjct:  1363 KKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLMRP 1408

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0043116 "negative regulation of vascular permeability" evidence=IEA

GO:0043010 "camera-type eye development" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00090955 hypothetical protein (873 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	689
pfam00620	152	pfam00620, RhoGAP, RhoGAP domain	2e-39
cd00159	169	cd00159, RhoGAP, RhoGAP: GTPase-activator protein	6e-37
smart00324	174	smart00324, RhoGAP, GTPase-activator protein for R	9e-31
cd04373	185	cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase-	1e-18
cd04403	187	cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_	8e-17
cd04404	195	cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGA	4e-15
cd04393	189	cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP	2e-14
cd04376	206	cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (G	2e-14
cd04377	186	cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGA	9e-14
cd04402	192	cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP	2e-13
cd04374	203	cd04374, RhoGAP_Graf, RhoGAP_Graf: GTPase-activato	2e-12
cd04375	220	cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase-	3e-12
cd04384	195	cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPas	4e-12
smart00233	102	smart00233, PH, Pleckstrin homology domain	4e-12
pfam14389	88	pfam14389, Lzipper-MIP1, Leucine-zipper of ternary	6e-12
cd04390	199	cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24	7e-12
cd04389	187	cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-	1e-11
pfam00169	101	pfam00169, PH, PH domain	1e-11
cd04385	184	cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase-	2e-11
cd04407	186	cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: Rho	3e-11
cd00821	92	cd00821, PH, Pleckstrin homology (PH) domain	1e-10
cd13255	110	cd13255, PH_TAAP2-like, Tandem PH-domain-containin	2e-10
cd04379	207	cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase-	5e-10
cd04383	188	cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPas	5e-10
cd04395	196	cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP	6e-10
cd04386	203	cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTP	6e-09
cd04409	211	cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPas	7e-09
cd04406	186	cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: Rho	4e-08
cd04391	216	cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP	4e-08
cd04394	202	cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGA	8e-08
cd04398	192	cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPas	1e-07
cd04378	203	cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: Rho	1e-07
cd04372	194	cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGA	3e-07
cd13282	96	cd13282, PH1_PLEKHH1_PLEKHH2, Pleckstrin homology	6e-07
cd04387	196	cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-ac	8e-07
cd13296	111	cd13296, PH2_MyoX, Myosin X Pleckstrin homology (P	9e-07
cd13248	104	cd13248, PH_PEPP1_2_3, Phosphoinositol 3-phosphate	1e-06
cd13276	117	cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin	2e-06
cd04392	208	cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP	3e-06
cd10573	96	cd10573, PH_DAPP1, Dual Adaptor for Phosphotyrosin	6e-06
cd01252	118	cd01252, PH_GRP1-like, General Receptor for Phosph	7e-06
cd04408	200	cd04408, RhoGAP_GMIP, RhoGAP_GMIP: RhoGAP (GTPase-	1e-05
cd13298	106	cd13298, PH1_PH_fungal, Fungal proteins Pleckstrin	1e-05
cd01251	105	cd01251, PH2_ADAP, ArfGAP with dual PH domains Ple	2e-05
cd13279	91	cd13279, PH_Cla4_Ste20, Pleckstrin homology (PH) d	3e-05
cd01265	101	cd01265, PH_TBC1D2A, TBC1 domain family member 2A	4e-05
cd13267	125	cd13267, PH_DOCK-D, Dedicator of cytokinesis-D sub	4e-05
cd04381	182	cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTP	1e-04
cd04382	193	cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGA	2e-04
cd13297	123	cd13297, PH3_MyoX-like, Myosin X-like Pleckstrin h	2e-04
cd13288	120	cd13288, PH_Ses, Sesquipedalian family Pleckstrin	2e-04
cd13253	93	cd13253, PH1_ARAP, ArfGAP with RhoGAP domain, anky	2e-04
cd04400	190	cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPas	2e-04
cd13271	114	cd13271, PH2_TAPP1_2, Tandem PH-domain-containing	3e-04
cd13284	99	cd13284, PH_OSBP_ORP4, Human Oxysterol binding pro	3e-04
cd13250	98	cd13250, PH_ACAP, ArfGAP with coiled-coil, ankyrin	4e-04
cd13247	125	cd13247, BAR-PH_APPL, Adaptor protein containing P	4e-04
cd13215	130	cd13215, PH-GRAM1_AGT26, Autophagy-related protein	6e-04
cd13265	108	cd13265, PH_evt, Evectin Pleckstrin homology (PH)	7e-04
cd01256	112	cd01256, PH_dynamin, Dynamin pleckstrin homology (	0.003

>gnl|CDD|216027 pfam00620, RhoGAP, RhoGAP domain

 Score =  141 bits (359), Expect = 2e-39
 Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 3/147 (2%)

Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADE--DAHVIGDCV 238
           P  +EK + FLEK G   EGI R +     +    + ++ G+      E  D HV+   +
Sbjct: 1   PLIVEKCVEFLEKRGLDTEGIFRVSGSASRIKELREAFDSGEDVDLDLEEEDVHVVASLL 60

Query: 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMH 298
           K  LRELP   +        +EA K + +E R+ A+R  +L   P  NR  L+ +L  ++
Sbjct: 61  KLFLRELPEPLLTFELYEEFIEAAKSEDEEERVEALR-ELLRKLPPANRDTLRYLLAHLN 119

Query: 299 TISSHAHENRMTPSAVAACMAPLLLRP 325
            ++ ++  N+M    +A    P LLRP
Sbjct: 120 RVAQNSEVNKMNAHNLAIVFGPTLLRP 146

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. Length = 152

>gnl|CDD|238090 cd00159, RhoGAP, RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases

 Score =  135 bits (342), Expect = 6e-37
 Identities = 53/156 (33%), Positives = 88/156 (56%), Gaps = 2/156 (1%)

Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE-FSADEDAHVIGDCVK 239
           P  +EK + +LEK G   EGI R +    +++   +++++G+      D D H +   +K
Sbjct: 1   PLIIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDIDDLEDYDVHDVASLLK 60

Query: 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHT 299
             LRELP   +P       +E  KI+ +E RI A++  +L++ P  NR LL+ +L+++H 
Sbjct: 61  LYLRELPEPLIPFELYDEFIELAKIEDEEERIEALKE-LLKSLPPENRDLLKYLLKLLHK 119

Query: 300 ISSHAHENRMTPSAVAACMAPLLLRPLLAGECELED 335
           IS ++  N+MT S +A   AP LLRP  + +  LED
Sbjct: 120 ISQNSEVNKMTASNLAIVFAPTLLRPPDSDDELLED 155

Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins. Length = 169

>gnl|CDD|214618 smart00324, RhoGAP, GTPase-activator protein for Rho-like GTPases

 Score =  118 bits (298), Expect = 9e-31
 Identities = 47/190 (24%), Positives = 79/190 (41%), Gaps = 21/190 (11%)

Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK--TEFSADEDAHVIGDCV 238
           P  +EK + +LEK G   EGI R +     V      ++ G       ++ D H +   +
Sbjct: 4   PIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELRDAFDSGPDPDLDLSEYDVHDVAGLL 63

Query: 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMH 298
           K  LRELP   +        +EA K++ +  R+ A+R  +    P  NR  L+ +L  ++
Sbjct: 64  KLFLRELPEPLITYELYEEFIEAAKLEDETERLRALRELL-SLLPPANRATLRYLLAHLN 122

Query: 299 TISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQ 358
            ++ H+ EN+MT   +A    P LLRP                      +A+     +  
Sbjct: 123 RVAEHSEENKMTARNLAIVFGPTLLRP------------------PDGEVASLKDIRHQN 164

Query: 359 AIIATLLEEY 368
            +I  L+E  
Sbjct: 165 TVIEFLIENA 174

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers. Length = 174

>gnl|CDD|239838 cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins

 Score = 84.0 bits (208), Expect = 1e-18
 Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 7/149 (4%)

Query: 181 PSFLEKALRFLEKFGTKVEGILR---QAADVEEVDRRVQEYEQGKTEFSA-DEDAHVIGD 236
           P FLEK + F+E  G + EGI R       ++ + ++  +      +  + D   + +  
Sbjct: 16  PIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQFDQD--HNLDLVSKDFTVNAVAG 73

Query: 237 CVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRM 296
            +K    ELP   +P S    L+EA KI+ +E R+ A++  +L+ FP  N  + + ++  
Sbjct: 74  ALKSFFSELPDPLIPYSMHLELVEAAKINDREQRLHALKE-LLKKFPPENFDVFKYVITH 132

Query: 297 MHTISSHAHENRMTPSAVAACMAPLLLRP 325
           ++ +S ++  N MT   ++ C  P L+RP
Sbjct: 133 LNKVSQNSKVNLMTSENLSICFWPTLMRP 161

p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 185

>gnl|CDD|239868 cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains

 Score = 78.6 bits (194), Expect = 8e-17
 Identities = 48/148 (32%), Positives = 72/148 (48%), Gaps = 4/148 (2%)

Query: 181 PSFLEKALRFLEKFGTKVEGILRQA---ADVEEVDRRVQEYEQGKTEFSADEDAHVIGDC 237
           P F+   +  +EK G  V+GI R +   A ++++   V   E+   + S  ED HVI   
Sbjct: 17  PKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGA 76

Query: 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMM 297
           +K   RELP    P S     + A K+   E R+SA++  I    P+PN   L+ + R +
Sbjct: 77  LKLFFRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLIKS-LPKPNHDTLKMLFRHL 135

Query: 298 HTISSHAHENRMTPSAVAACMAPLLLRP 325
             +  H  +NRMT   +A    P LLRP
Sbjct: 136 CRVIEHGEKNRMTTQNLAIVFGPTLLRP 163

Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 187

>gnl|CDD|239869 cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3)

 Score = 73.9 bits (182), Expect = 4e-15
 Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 24/199 (12%)

Query: 176 DIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQE-YEQGKTE-FSADEDAHV 233
           + +  P  + + + +L+      EGI R++A+ + V + VQ+ Y  G+   F   ED H+
Sbjct: 19  EQEPIPPVVRETVEYLQAHALTTEGIFRRSANTQVV-KEVQQKYNMGEPVDFDQYEDVHL 77

Query: 234 IGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRI 293
               +K  LRELP   +       ++    +D KE R+  ++  +L+T PE N ++L+ +
Sbjct: 78  PAVILKTFLRELPEPLLTFDLYDDIVGFLNVD-KEERVERVKQ-LLQTLPEENYQVLKYL 135

Query: 294 LRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANA 353
           ++ +  +S+H+ +N+MT S +A    P LL                  D S  L    +A
Sbjct: 136 IKFLVQVSAHSDQNKMTNSNLAVVFGPNLLWA---------------KDASMSL----SA 176

Query: 354 ANNAQAIIATLLEEYENIF 372
            N        LL+  + IF
Sbjct: 177 INPINTFTKFLLDHQDEIF 195

It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 195

>gnl|CDD|239858 cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins

 Score = 72.1 bits (177), Expect = 2e-14
 Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 5/161 (3%)

Query: 178 DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGD 236
           +G P+ +   + +LE+ G + EG+ R   + E V+   Q  + G+  + S + D      
Sbjct: 18  NGVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLSKEADVCSAAS 77

Query: 237 CVKHVLRELPSSPVPASCCTALLEAY-KIDRKEARISAMRSAILETFPEPNRRLLQRILR 295
            ++  L+ELP   +PAS    L++ Y   + ++     +R  +L+  P  N  LL+ +  
Sbjct: 78  LLRLFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRD-LLQQLPPVNYSLLKFLCH 136

Query: 296 MMHTISSHAHENRMTPSAVAACMAPLL--LRPLLAGECELE 334
            +  ++S  HENRMT   +AA   P +  +   +    E E
Sbjct: 137 FLSNVASQHHENRMTAENLAAVFGPDVFHVYTDVEDMKEQE 177

The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude. Length = 189

>gnl|CDD|239841 cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins

 Score = 72.1 bits (177), Expect = 2e-14
 Identities = 45/204 (22%), Positives = 89/204 (43%), Gaps = 25/204 (12%)

Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVK 239
           P  +E   + LEK G +  GI R  +  + V +  +E+++G       +   H +   +K
Sbjct: 10  PRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLDENHSVHDVAALLK 69

Query: 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHT 299
              R++P   +P    TA +    ++  E ++ A++  ++   P  N   L R+L+ +HT
Sbjct: 70  EFFRDMPDPLLPRELYTAFIGTALLEPDE-QLEALQ-LLIYLLPPCNCDTLHRLLKFLHT 127

Query: 300 ISSHAHE-----------NRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLL 348
           ++ HA +           N+MT   +A    P LL    +GE E         +++A + 
Sbjct: 128 VAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLHKQKSGEREFVQASLRIEESTAII- 186

Query: 349 AAANAANNAQAIIATLLEEYENIF 372
                      ++ T+++ YE +F
Sbjct: 187 ----------NVVQTMIDNYEELF 200

ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 206

>gnl|CDD|239842 cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins

 Score = 69.8 bits (171), Expect = 9e-14
 Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 2/145 (1%)

Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADE-DAHVIGDCVK 239
           P  LEK L  +E  G   EGI R++    ++    Q  +      + ++   HVI   +K
Sbjct: 16  PLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTDPDSVNLEDYPIHVITSVLK 75

Query: 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHT 299
             LRELP   +        L A +++ K+ R+ A+  ++LE  P  N   L+R++  +  
Sbjct: 76  QWLRELPEPLMTFELYENFLRAMELEEKQERVRAL-YSVLEQLPRANLNTLERLIFHLVR 134

Query: 300 ISSHAHENRMTPSAVAACMAPLLLR 324
           ++     NRM+ +A+A   AP +LR
Sbjct: 135 VALQEEVNRMSANALAIVFAPCILR 159

Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 186

>gnl|CDD|239867 cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 15/145 (10%)

Query: 188 LRFLEKFGTKVEGILRQAADV-------EEVDRRVQEYEQGKTEFSADEDAHVIGDCVKH 240
           L  L + G   EGI R++A+        E+++         + +  A E   ++   +K 
Sbjct: 23  LSLLYQKGPSTEGIFRRSANAKACKELKEKLNS------GVEVDLKA-EPVLLLASVLKD 75

Query: 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTI 300
            LR +P S + +      + A   + +E +I+ ++  +L+  P PN  LL+ ++ ++H I
Sbjct: 76  FLRNIPGSLLSSDLYEEWMSALDQENEEEKIAELQ-RLLDKLPRPNVLLLKHLICVLHNI 134

Query: 301 SSHAHENRMTPSAVAACMAPLLLRP 325
           S ++  N+M    +A C+AP LL P
Sbjct: 135 SQNSETNKMDAFNLAVCIAPSLLWP 159

ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 192

>gnl|CDD|239839 cd04374, RhoGAP_Graf, RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 8/155 (5%)

Query: 178 DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDR------RVQEYEQGKTEFSADE-D 230
           D G  F+ K +  +E  G   +G+ R      +V +        +    G  +    E +
Sbjct: 26  DIGFKFVRKCIEAVETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWE 85

Query: 231 AHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLL 290
              I   +K  LR LP   +        + A K +  E+R++A+ S + +  PE NR +L
Sbjct: 86  IKTITSALKTYLRNLPEPLMTYELHNDFINAAKSENLESRVNAIHSLVHK-LPEKNREML 144

Query: 291 QRILRMMHTISSHAHENRMTPSAVAACMAPLLLRP 325
           + +++ +  +S H+ +N MT S +     P LLRP
Sbjct: 145 ELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRP 179

Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|239840 cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins

 Score = 65.9 bits (161), Expect = 3e-12
 Identities = 37/147 (25%), Positives = 72/147 (48%), Gaps = 10/147 (6%)

Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQ-----GKTEFSADEDAHVIG 235
           P  +++A+R+L        G+ R++     V  R+Q+                + A+ + 
Sbjct: 21  PRSIQQAMRWLRNNALDQVGLFRKSG----VKSRIQKLRSMIESSTDNVNYDGQQAYDVA 76

Query: 236 DCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILR 295
           D +K   R+LP   +        +  ++   KE R+ A++ AIL   P+ NR +LQ +L 
Sbjct: 77  DMLKQYFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAIL-LLPDENREVLQTLLY 135

Query: 296 MMHTISSHAHENRMTPSAVAACMAPLL 322
            +  +++++ EN+MT + +A C+AP L
Sbjct: 136 FLSDVAANSQENQMTATNLAVCLAPSL 162

DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 220

>gnl|CDD|239849 cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA

 Score = 65.6 bits (160), Expect = 4e-12
 Identities = 38/163 (23%), Positives = 65/163 (39%), Gaps = 8/163 (4%)

Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK----TEFSADEDAHVIGD 236
           P  L+    F+EK G  V+GI R +     + R   E++  +    T+    +D H +  
Sbjct: 19  PQVLKSCTEFIEKHGI-VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSS 77

Query: 237 CVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRM 296
             K   RELP+  +         EA      E R+  +   I +  P P+ R L+ ++R 
Sbjct: 78  LCKLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVI-QQLPPPHYRTLEFLMRH 136

Query: 297 MHTISSHAHENRMTPSAVAACMAPLLLRP--LLAGECELEDDF 337
           +  ++ +     M    +A   AP LLR   + +        F
Sbjct: 137 LSRLAKYCSITNMHAKNLAIVWAPNLLRSKQIESACFSGTAAF 179

CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 195

>gnl|CDD|214574 smart00233, PH, Pleckstrin homology domain

 Score = 62.6 bits (152), Expect = 4e-12
 Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 7/108 (6%)

Query: 19  VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQR-GGEVNLTLGGIDLNN 77
           V K G L+  S G G KSWKKR+F+L  ++L+++K+       +  G ++L+  G  +  
Sbjct: 1   VIKEGWLYKKSGG-GKKSWKKRYFVLFNSTLLYYKSKKDKKSYKPKGSIDLS--GCTVRE 57

Query: 78  SGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125
           +      +      +   D +      L+AE+ E+  +W  AL  A+A
Sbjct: 58  APDPDSSKKPHCFEIKTSDRKT---LLLQAESEEEREKWVEALRKAIA 102

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. Length = 102

>gnl|CDD|206557 pfam14389, Lzipper-MIP1, Leucine-zipper of ternary complex factor MIP1

 Score = 61.4 bits (150), Expect = 6e-12
 Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 614 RRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSG-QFSSSRGMDSKV 668
           ++K+A  ERR ALEQ+V++LQ+QLQ E DLR ALE  L  SSG        +  K 
Sbjct: 1   KKKKASQERRSALEQEVAKLQKQLQQEEDLREALEKALGRSSGSLLPLPSSLPKKA 56

This leucine-zipper is towards the N-terminus of MIP1 proteins. These proteins, here largely from plants, are subunits of the TORC2 (rictor-mTOR) protein complex controlling cell growth and proliferation. The leucine-zipper is likely to be the region that interacts with plant MADS-box factors,. Length = 88

>gnl|CDD|239855 cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain

 Score = 64.8 bits (158), Expect = 7e-12
 Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%)

Query: 181 PSFLEKALRFLEKFGTKVEGILR---QAADVEEVDRRVQEYEQG-KTEFSADEDAHVIGD 236
           P  +E+ + F+ + G K EG+ R   QA  V+++      ++ G +  F +D D H +  
Sbjct: 23  PILVEQCVDFIREHGLKEEGLFRLPGQANLVKQLQ---DAFDAGERPSFDSDTDVHTVAS 79

Query: 237 CVKHVLRELPSSPVPAS------CCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLL 290
            +K  LRELP   +P +       C  LL     D ++     M+   +   P+ N  LL
Sbjct: 80  LLKLYLRELPEPVIPWAQYEDFLSCAQLLSK---DEEKGLGELMKQ--VSILPKVNYNLL 134

Query: 291 QRILRMMHTISSHAHENRMTPSAVAACMAPLLLRP 325
             I R +  + S++  N+M+   +A    P +LRP
Sbjct: 135 SYICRFLDEVQSNSSVNKMSVQNLATVFGPNILRP 169

ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 199

>gnl|CDD|239854 cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 15/143 (10%)

Query: 195 GTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRELPSSPVPASC 254
           G + EGI R   D++EV+      +Q     S  ED HV    +K  LREL    +P + 
Sbjct: 37  GFQTEGIFRVPGDIDEVNELKLRVDQWDYPLSGLEDPHVPASLLKLWLRELEEPLIPDAL 96

Query: 255 CTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRM--MHTISSHAHENRMTPS 312
               + A + D  +A        I++  P  NR +L  ++    +     +    +M  S
Sbjct: 97  YQQCISASE-DPDKAV------EIVQKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVS 149

Query: 313 AVAACMAPLLLRPLLAGECELED 335
            +A   AP +LR      C  +D
Sbjct: 150 NLAMVFAPNILR------CTSDD 166

Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 187

>gnl|CDD|215766 pfam00169, PH, PH domain

 Score = 60.9 bits (148), Expect = 1e-11
 Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 6/107 (5%)

Query: 19  VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNS 78
           V K G L     G G KSWKKR+F+L    L+++K+   +  +  G + L+  G  +   
Sbjct: 1   VIKEGWLLKKGSG-GRKSWKKRYFVLFDGVLLYYKDSKKSSSRPKGSIPLS--GCQVTKV 57

Query: 79  GSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125
                 + K    +      D   F L+AE+ E+  EW  A+  A+ 
Sbjct: 58  PDSEDGKRKNCFEIRTG---DRETFLLQAESEEERKEWVKAIRSAIR 101

PH stands for pleckstrin homology. Length = 101

>gnl|CDD|239850 cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 32/151 (21%), Positives = 70/151 (46%), Gaps = 4/151 (2%)

Query: 178 DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGD- 236
           +  P  ++K + F+ + G   EGI R+      V + ++ + +        E  + + D 
Sbjct: 13  NDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDV 72

Query: 237 --CVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRIL 294
              +K  LR+LP   + +      +EA +++ K+ RI+  +  ++   P  NR  L+ ++
Sbjct: 73  ADVLKRFLRDLPDPLLTSELHAEWIEAAELENKDERIARYK-ELIRRLPPINRATLKVLI 131

Query: 295 RMMHTISSHAHENRMTPSAVAACMAPLLLRP 325
             ++ +  H+ EN+M+   +A    P L + 
Sbjct: 132 GHLYRVQKHSDENQMSVHNLALVFGPTLFQT 162

ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 184

>gnl|CDD|239872 cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB

 Score = 62.3 bits (151), Expect = 3e-11
 Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 2/145 (1%)

Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFS-ADEDAHVIGDCVK 239
           P  LEK L  +E  G   EGI R++     +    Q  +         +   H I   +K
Sbjct: 16  PIVLEKLLEHVEMHGLYTEGIYRKSGSANRMKELHQLLQADPENVKLENYPIHAITGLLK 75

Query: 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHT 299
             LRELP   +  +     L A ++  K+ ++ A+   +LE  P  N   L+R++  +  
Sbjct: 76  QWLRELPEPLMTFAQYNDFLRAVELPEKQEQLQAIYR-VLEQLPTANHNTLERLIFHLVK 134

Query: 300 ISSHAHENRMTPSAVAACMAPLLLR 324
           ++     NRM+P+A+A   AP LLR
Sbjct: 135 VALEEDVNRMSPNALAIVFAPCLLR 159

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 186

>gnl|CDD|241231 cd00821, PH, Pleckstrin homology (PH) domain

 Score = 58.5 bits (141), Expect = 1e-10
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 7/99 (7%)

Query: 21  KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS 80
           K G L     G G KSWKKRWF+L    L+++K+   +  +  G + L+ G         
Sbjct: 1   KEGWLKKRG-GKGLKSWKKRWFVLFDDVLLYYKSKKDSSKKPKGLIPLSDGL----EVEL 55

Query: 81  VVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTA 119
           V          ++ PD   GR + L+AE+ E+  EW  A
Sbjct: 56  VSSSGKPNCFELVTPDR--GRTYYLQAESEEEREEWLEA 92

PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 92

>gnl|CDD|241409 cd13255, PH_TAAP2-like, Tandem PH-domain-containing protein 2 Pleckstrin homology (PH) domain

 Score = 58.2 bits (141), Expect = 2e-10
 Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 18/116 (15%)

Query: 14  GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGI 73
             S  V K+G  ++  KG   K+WKKRWF+L  T L ++KND         E  L L  I
Sbjct: 1   MISEAVLKAG--YLEKKGERRKTWKKRWFVLRPTKLAYYKND--------KEYRL-LRLI 49

Query: 74  DLNNSGSVVVREDKK---LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126
           DL +  +    + KK      ++ P     R F ++A++  ++  W +A+ LA   
Sbjct: 50  DLTDIHTCTEVQLKKHDNTFGIVTPA----RTFYVQADSKAEMESWISAINLARQA 101

The binding of TAPP2 (also called PLEKHA2) adaptors to PtdIns(3,4)P(2), but not PI(3,4, 5)P3, function as negative regulators of insulin and PI3K signalling pathways (i.e. TAPP/utrophin/syntrophin complex). TAPP2 contains two sequential PH domains in which the C-terminal PH domain specifically binds PtdIns(3,4)P2 with high affinity. The N-terminal PH domain does not interact with any phosphoinositide tested. They also contain a C-terminal PDZ-binding motif that interacts with several PDZ-binding proteins, including PTPN13 (known previously as PTPL1 or FAP-1) as well as the scaffolding proteins MUPP1 (multiple PDZ-domain-containing protein 1), syntrophin and utrophin. The members here are most sequence similar to TAPP2 proteins, but may not be actual TAPP2 proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 110

>gnl|CDD|239844 cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins

 Score = 59.4 bits (144), Expect = 5e-10
 Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 8/153 (5%)

Query: 181 PSFLEKALRFLEKFGTKVEGILR--QAADVEEVDRRVQEYEQGKTEFSADE--DAHVIGD 236
           P  L+K ++ +E+ G  V G+ R   +A  ++  R   E      E S +   D +VI  
Sbjct: 19  PIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITG 78

Query: 237 CVKHVLRELPSSPVPASCCTALLEAYKI---DRKEARISAMRSAILETFPEPNRRLLQRI 293
            +K  LRELP   +       +LEA  +   +  +       S I++  P   +  L  +
Sbjct: 79  VLKDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLS-IIDCLPLSAKATLLLL 137

Query: 294 LRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326
           L  +  + S++  N+MTP  +A C  P+L+   
Sbjct: 138 LDHLSLVLSNSERNKMTPQNLAVCFGPVLMFCS 170

Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 207

>gnl|CDD|239848 cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs

 Score = 59.0 bits (143), Expect = 5e-10
 Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 6/148 (4%)

Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKH 240
           P  +E  +RF+  +G + +GI R +    EV+     +E+G+   + D++ H I + V  
Sbjct: 19  PLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDI-NSVAG 77

Query: 241 VL----RELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRM 296
           VL    R L +   P      L+   K++    R+  +R  IL T P     +++ +   
Sbjct: 78  VLKLYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIRE-ILSTLPRSVIIVMRYLFAF 136

Query: 297 MHTISSHAHENRMTPSAVAACMAPLLLR 324
           ++ +S  + EN M P  +A C  P L+ 
Sbjct: 137 LNHLSQFSDENMMDPYNLAICFGPTLMP 164

srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 188

>gnl|CDD|239860 cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins

 Score = 59.0 bits (143), Expect = 6e-10
 Identities = 31/149 (20%), Positives = 64/149 (42%), Gaps = 5/149 (3%)

Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSAD----EDAHVIGD 236
           P  +E     +E  G +  GI R   +   +    +E  +G  +         D +V+  
Sbjct: 19  PLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSS 78

Query: 237 CVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRM 296
            +K   R+LP            +EA +I+    R+  +R  ++ + P+ +   L+ ++R 
Sbjct: 79  LLKSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRR-LIHSLPDHHYETLKHLIRH 137

Query: 297 MHTISSHAHENRMTPSAVAACMAPLLLRP 325
           + T++ ++  N+M P  +A    P L+R 
Sbjct: 138 LKTVADNSEVNKMEPRNLAIVFGPTLVRT 166

ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 196

>gnl|CDD|239851 cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins

 Score = 56.3 bits (136), Expect = 6e-09
 Identities = 44/195 (22%), Positives = 82/195 (42%), Gaps = 19/195 (9%)

Query: 184 LEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADE---DAHVIGDCVKH 240
           +E  +  L + G   EG+ R      ++ R     + G      DE   D H +   +K 
Sbjct: 24  IEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVASALKS 83

Query: 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTI 300
            LRELP   +  +     ++A     ++ R+ A+   IL   P  NR  L+ +++ +  +
Sbjct: 84  YLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIW-RILNKLPRENRDNLRYLIKFLSKL 142

Query: 301 SSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAI 360
           +  + EN+M+PS +A  +AP LL             +  N  + A++ A  +      AI
Sbjct: 143 AQKSDENKMSPSNIAIVLAPNLL-------------WAKNEGSLAEMAAGTSVHVV--AI 187

Query: 361 IATLLEEYENIFDDE 375
           +  ++   +  F  E
Sbjct: 188 VELIISHADWFFPGE 202

Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|239874 cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1)

 Score = 56.0 bits (135), Expect = 7e-09
 Identities = 44/176 (25%), Positives = 70/176 (39%), Gaps = 24/176 (13%)

Query: 173 ALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK--TEFSADED 230
           A +  DG P  ++K    +E     ++GI R       V++  Q +E GK   E S +  
Sbjct: 9   AKKSPDGIPFIIKKCTSEIESRALCLKGIYRVNGAKSRVEKLCQAFENGKDLVELS-ELS 67

Query: 231 AHVIGDCVKHVLRELPSSPVP----------ASCCTALLEAYKIDRKEA----------- 269
            H I + +K  LR+LP   +           A     + E  +  +              
Sbjct: 68  PHDISNVLKLYLRQLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELN 127

Query: 270 RISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRP 325
           RI      +L   P PN   LQ ++  +H +S  A EN+M+ S +     P L+RP
Sbjct: 128 RILLKSKDLLRQLPAPNYNTLQFLIVHLHRVSEQAEENKMSASNLGIIFGPTLIRP 183

PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 211

>gnl|CDD|239871 cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA

 Score = 53.5 bits (128), Expect = 4e-08
 Identities = 34/145 (23%), Positives = 66/145 (45%), Gaps = 2/145 (1%)

Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADE-DAHVIGDCVK 239
           P  +EK + ++E  G   EGI R++    ++    Q  +      + D+ + HVI    K
Sbjct: 16  PLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDANSVNLDDYNIHVIASVFK 75

Query: 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHT 299
             LR+LP+  +        L A  +  +   +  + S +++     +   L+R++  +  
Sbjct: 76  QWLRDLPNPLMTFELYEEFLRAMGLQERRETVRGVYS-VIDQLSRTHLNTLERLIFHLVR 134

Query: 300 ISSHAHENRMTPSAVAACMAPLLLR 324
           I+     NRM+ +A+A   AP +LR
Sbjct: 135 IALQEETNRMSANALAIVFAPCILR 159

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 186

>gnl|CDD|239856 cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 47/197 (23%), Positives = 77/197 (39%), Gaps = 33/197 (16%)

Query: 181 PSFLEKALRFLEKFGTKVEGILR---QAADVEEVDRRVQEYEQGKTEFSADE-------- 229
           P   +K +  LE+ G + EGILR    A  V+         ++ + +F            
Sbjct: 23  PLIFQKLINKLEERGLETEGILRIPGSAQRVK------FLCQELEAKFYEGTFLWDQVKQ 76

Query: 230 -DAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRR 288
            DA  +   +K  +RELP   +      A      +  K+ ++ A+   +L   PE NR 
Sbjct: 77  HDAASL---LKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQALNLLVL-LLPEANRD 132

Query: 289 LLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLL 348
            L+ +L  +  +  H  +N+M    VA  MAP L  P      +       N     ++ 
Sbjct: 133 TLKALLEFLQKVVDHEEKNKMNLWNVAMIMAPNLFPPRGKHSKD-------NESLQEEVN 185

Query: 349 AAANAANNAQAIIATLL 365
            AA  AN    I+  L+
Sbjct: 186 MAAGCAN----IMRLLI 198

The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 216

>gnl|CDD|239859 cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins

 Score = 52.9 bits (127), Expect = 8e-08
 Identities = 40/148 (27%), Positives = 62/148 (41%), Gaps = 13/148 (8%)

Query: 181 PSFLEKALRFLE-KFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHV--IGDC 237
           P FL  A  FL     T  EG+ R++  V        + E G+   +    A    +   
Sbjct: 21  PKFLVDACTFLLDHLST--EGLFRKSGSVVRQKELKAKLEGGE---ACLSSALPCDVAGL 75

Query: 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILET--FPEPNRRLLQRILR 295
           +K   RELP   +P     ALL+A ++   E R SA    +L T   P+ +   L+    
Sbjct: 76  LKQFFRELPEPLLPYDLHEALLKAQELPTDEERKSAT---LLLTCLLPDEHVNTLRYFFS 132

Query: 296 MMHTISSHAHENRMTPSAVAACMAPLLL 323
            ++ ++    EN+M  S +A   AP L 
Sbjct: 133 FLYDVAQRCSENKMDSSNLAVIFAPNLF 160

The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 202

>gnl|CDD|239863 cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 26/168 (15%)

Query: 174 LEDI---DGG--PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSAD 228
           LED+   +G   P+ + + ++ +E FG  +EGI R + +V     RV +    K  F  D
Sbjct: 5   LEDLILREGDNVPNIVYQCIQAIENFGLNLEGIYRLSGNVS----RVNKL---KELFDKD 57

Query: 229 -------------EDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMR 275
                         D H +   +K   RELP   +  +     +EA KI+ +  R  A+ 
Sbjct: 58  PLNVLLISPEDYESDIHSVASLLKLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALH 117

Query: 276 SAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLL 323
             I +  P+ N   L+ ++  +  I  H   NRM+ + +A    P L+
Sbjct: 118 GLIND-LPDANYATLRALMFHLARIKEHESVNRMSVNNLAIIWGPTLM 164

Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 192

>gnl|CDD|239843 cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1)

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 37/170 (21%), Positives = 67/170 (39%), Gaps = 16/170 (9%)

Query: 172 LALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK--TEFSADE 229
           +  +  D  P  ++K    +E     V+GI R +     V++  Q +E GK   E S + 
Sbjct: 8   VPRDFPDEVPFIIKKCTSEIENRALGVQGIYRVSGSKARVEKLCQAFENGKDLVELS-EL 66

Query: 230 DAHVIGDCVKHVLRELPSSPVP-------ASCCTALLEAYKIDRKEARISAMRSAI---- 278
             H I   +K  LR+LP   +         +    +    + D+       +   I    
Sbjct: 67  SPHDISSVLKLFLRQLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLK 126

Query: 279 --LETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326
             L   P  N   LQ ++  ++ ++    EN+M+P+ +     P L+RP 
Sbjct: 127 DLLRQLPASNYNTLQHLIAHLYRVAEQFEENKMSPNNLGIVFGPTLIRPR 176

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|239837 cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 35/149 (23%), Positives = 68/149 (45%), Gaps = 5/149 (3%)

Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVD--RRVQEYEQGKTEFSAD--EDAHVIGD 236
           P  ++  +R +E  G + EG+ R +   EE++  +   + +  K + SA    D +VI  
Sbjct: 17  PMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITG 76

Query: 237 CVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRM 296
            +K   R+LP   +        ++A KI   + R+ A+  A L   P  +   L+ ++  
Sbjct: 77  ALKLYFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEA-LMLLPPAHYETLRYLMEH 135

Query: 297 MHTISSHAHENRMTPSAVAACMAPLLLRP 325
           +  ++ H  +N+M    +     P L+RP
Sbjct: 136 LKRVTLHEKDNKMNAENLGIVFGPTLMRP 164

Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 194

>gnl|CDD|241436 cd13282, PH1_PLEKHH1_PLEKHH2, Pleckstrin homology (PH) domain containing, family H (with MyTH4 domain) members 1 and 2 (PLEKHH1) PH domain, repeat 1

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 15/89 (16%)

Query: 35  KSWKKRWFILTRTSLVFFK--NDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92
           K+WK+RWF+L    L ++K  ND    PQ         G I L+ S  +   E  +   +
Sbjct: 13  KTWKRRWFVLKNGELFYYKSPNDVIRKPQ---------GQIALDGSCEIARAEGAQTFEI 63

Query: 93  LFPDGRDGRAFTLKAETSEDLYEWKTALE 121
           +     + R + L A++  DL EW   ++
Sbjct: 64  V----TEKRTYYLTADSENDLDEWIRVIQ 88

PLEKHH1 and PLEKHH2 (also called PLEKHH1L) are thought to function in phospholipid binding and signal transduction. There are 3 Human PLEKHH genes: PLEKHH1, PLEKHH2, and PLEKHH3. There are many isoforms, the longest of which contain a FERM domain, a MyTH4 domain, two PH domains, a peroximal domain, a vacuolar domain, and a coiled coil stretch. The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 96

>gnl|CDD|239852 cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins

 Score = 49.9 bits (119), Expect = 8e-07
 Identities = 40/154 (25%), Positives = 59/154 (38%), Gaps = 28/154 (18%)

Query: 196 TKVEGILRQAADVEEVDRRVQEYEQG--------------KTEFSA----------DEDA 231
           +KV  I+RQ   VEEV+RR  E E G              K  F            + D 
Sbjct: 14  SKVPYIVRQC--VEEVERRGME-EVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDV 70

Query: 232 HVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQ 291
           + I   +K   RELP             E   +    A+ S M + +L + P+PN     
Sbjct: 71  NAIAGTLKLYFRELPEPLFTDELYPNFAEGIALSDPVAKESCMLN-LLLSLPDPNLVTFL 129

Query: 292 RILRMMHTISSHAHENRMTPSAVAACMAPLLLRP 325
            +L  +  ++     N+M+   +A    P LLRP
Sbjct: 130 FLLHHLKRVAEREEVNKMSLHNLATVFGPTLLRP 163

Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 196

>gnl|CDD|241450 cd13296, PH2_MyoX, Myosin X Pleckstrin homology (PH) domain, repeat 2

 Score = 47.8 bits (114), Expect = 9e-07
 Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 14/106 (13%)

Query: 18  TVFKSGPLFISSKGIGW---KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGID 74
              KSG L+    G      K+WK RWF+L  T L +++ND         E    LG ID
Sbjct: 6   EALKSGWLYKKGGGSSTLSRKNWKSRWFVLRDTVLKYYENDQ--------EGAKALGTID 57

Query: 75  LNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTAL 120
           + ++  +V   D       F      R +   AE+ ED  +W + L
Sbjct: 58  IRSAKEIV---DNTPKENGFDITTPSRTYHFVAESPEDASQWFSVL 100

MyoX, a MyTH-FERM myosin, is a molecular motor that has crucial functions in the transport and/or tethering of integrins in the actin-based extensions known as filopodia, microtubule binding, and in netrin-mediated axon guidance. It functions as a dimer. MyoX walks on bundles of actin, rather than single filaments, unlike the other unconventional myosins. MyoX is present in organisms ranging from humans to choanoflagellates, but not in Drosophila and Caenorhabditis elegans.MyoX consists of a N-terminal motor/head region, a neck made of 3 IQ motifs, and a tail consisting of a coiled-coil domain, a PEST region, 3 PH domains, a myosin tail homology 4 (MyTH4), and a FERM domain at its very C-terminus. The first PH domain in the MyoX tail is a split-PH domain, interupted by the second PH domain such that PH 1a and PH 1b flanks PH 2. The third PH domain (PH 3) follows the PH 1b domain. This cd contains the second PH repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 111

>gnl|CDD|241402 cd13248, PH_PEPP1_2_3, Phosphoinositol 3-phosphate binding proteins 1, 2, and 3 pleckstrin homology (PH) domain

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 35/107 (32%)

Query: 31  GIGWKSWKKRWFILTRTSLVFFK--NDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKK 88
           G G K+WKKRWF+L    L ++K   +  AL                   GS+++     
Sbjct: 18  GSGLKNWKKRWFVLKDNCLYYYKDPEEEKAL-------------------GSILLPSYT- 57

Query: 89  LLTVLFPDGRDGRAFTLK------------AETSEDLYEWKTALELA 123
            ++   P     R F  K            A+T E++ +W  AL LA
Sbjct: 58  -ISPASPSDEINRKFAFKAEHAGMRTYYFAADTQEEMEQWMKALSLA 103

PEPP1 (also called PLEKHA4/PH domain-containing family A member 4 and RHOXF1/Rhox homeobox family member 1), and related homologs PEPP2 (also called PLEKHA5/PH domain-containing family A member 5) and PEPP3 (also called PLEKHA6/PH domain-containing family A member 6), have PH domains that interact specifically with PtdIns(3,4)P3. Other proteins that bind PtdIns(3,4)P3 specifically are: TAPP1 (tandem PH-domain-containing protein-1) and TAPP2], PtdIns3P AtPH1, and Ptd- Ins(3,5)P2 (centaurin-beta2). All of these proteins contain at least 5 of the 6 conserved amino acids that make up the putative phosphatidylinositol 3,4,5- trisphosphate-binding motif (PPBM) located at their N-terminus. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 104

>gnl|CDD|241430 cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin homolog (PH) 1 (AtPH1) PH domain

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 16/103 (15%)

Query: 33  GW--------KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR 84
           GW        K+W++RWF+L +  L +FK+          E     G IDL++  +V   
Sbjct: 11  GWLTKQGGSIKTWRRRWFVLKQGKLFYFKD-----EDPDSE---PRGVIDLSDCLTVKSA 62

Query: 85  EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127
           E+       F      R F L A++ ++  EW +A+  A+ + 
Sbjct: 63  EEATNKEFAFEVSTPERTFYLIADSEKEKEEWISAIGRAIVKL 105

AtPH1 is expressed in all plant tissue and is proposed to be the plant homolog of human pleckstrin. Pleckstrin consists of two PH domains separated by a linker region, while AtPH has a single PH domain with a short N-terminal extension. AtPH1 binds PtdIns3P specifically and is thought to be an adaptor molecule since it has no obvious catalytic functions. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 117

>gnl|CDD|239857 cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 32/173 (18%)

Query: 178 DGGPSFLE------KALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT------EF 225
            G P   E      + + +LEK   +VEG+ R+  +             G         F
Sbjct: 1   FGAPLTEEGIAQIYQLIEYLEK-NLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESGGF 59

Query: 226 SADEDAHVIGDCVKHVLRELPSSPV------PASC-----CTALLEAYK--IDRKEARIS 272
            A + A V+    K  L ELP  P+      PA       C    +  K     KE  + 
Sbjct: 60  HAHDCATVL----KGFLGELPE-PLLTHAHYPAHLQIADLCQFDEKGNKTSAPDKERLLE 114

Query: 273 AMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRP 325
           A++  +L   PE NR LL+ IL +++  + H  +N+M+   +A    P L+ P
Sbjct: 115 ALQLLLL-LLPEENRNLLKLILDLLYQTAKHEDKNKMSADNLALLFTPHLICP 166

The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 208

>gnl|CDD|241309 cd10573, PH_DAPP1, Dual Adaptor for Phosphotyrosine and 3-Phosphoinositides Pleckstrin homology (PH) domain

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 12/83 (14%)

Query: 35  KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLG-GIDLNNSGSVVVREDKKLLTVL 93
           K+WK RWF+L +  L +FK      P R   ++LT    +  + S     +       ++
Sbjct: 17  KNWKTRWFVLRKNELKYFKTRTDTKPIR--TLDLTECSSVQADYS-----QGKPNCFRLV 69

Query: 94  FPDGRDGRAFTLKAETSEDLYEW 116
           FPD    R F + A+T E+  EW
Sbjct: 70  FPD----RTFYMYAKTEEEADEW 88

DAPP1 (also known as PHISH/3' phosphoinositide-interacting SH2 domain-containing protein or Bam32) plays a role in B-cell activation and has potential roles in T-cell and mast cell function. DAPP1 promotes B cell receptor (BCR) induced activation of Rho GTPases Rac1 and Cdc42, which feed into mitogen-activated protein kinases (MAPK) activation pathways and affect cytoskeletal rearrangement. DAPP1can also regulate BCR-induced activation of extracellular signal-regulated kinase (ERK), and c-jun NH2-terminal kinase (JNK). DAPP1 contains an N-terminal SH2 domain and a C-terminal pleckstrin homology (PH) domain with a single tyrosine phosphorylation site located centrally. DAPP1 binds strongly to both PtdIns(3,4,5)P3 and PtdIns(3,4)P2. The PH domain is essential for plasma membrane recruitment of PI3K upon cell activation. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 96

>gnl|CDD|241283 cd01252, PH_GRP1-like, General Receptor for Phosphoinositides-1-like Pleckstrin homology (PH) domain

 Score = 45.4 bits (108), Expect = 7e-06
 Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 41/123 (33%)

Query: 33  GW--------KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR 84
           GW        KSWK+RWFILT   L +F+      P          G I L N   + VR
Sbjct: 7   GWLLKLGGRVKSWKRRWFILTDNCLYYFEYTTDKEP---------RGIIPLEN---LSVR 54

Query: 85  ED----KKLLTVLFPDG----------RDGR-------AFTLKAETSEDLYEWKTALELA 123
           E     K     L+              DG+        + + A T E++ EW  +++ +
Sbjct: 55  EVEDSKKPFCFELYSPSNEVIKACKTDSDGKVVEGNHTVYRISAATEEEMDEWIKSIKAS 114

Query: 124 LAQ 126
           +++
Sbjct: 115 ISR 117

GRP1/cytohesin3 and the related proteins ARNO (ARF nucleotide-binding site opener)/cytohesin-2 and cytohesin-1 are ARF exchange factors that contain a pleckstrin homology (PH) domain thought to target these proteins to cell membranes through binding polyphosphoinositides. The PH domains of all three proteins exhibit relatively high affinity for PtdIns(3,4,5)P3. Within the Grp1 family, diglycine (2G) and triglycine (3G) splice variants, differing only in the number of glycine residues in the PH domain, strongly influence the affinity and specificity for phosphoinositides. The 2G variants selectively bind PtdIns(3,4,5)P3 with high affinity,the 3G variants bind PtdIns(3,4,5)P3 with about 30-fold lower affinity and require the polybasic region for plasma membrane targeting. These ARF-GEFs share a common, tripartite structure consisting of an N-terminal coiled-coil domain, a central domain with homology to the yeast protein Sec7, a PH domain, and a C-terminal polybasic region. The Sec7 domain is autoinhibited by conserved elements proximal to the PH domain. GRP1 binds to the DNA binding domain of certain nuclear receptors (TRalpha, TRbeta, AR, ER, but not RXR), and can repress thyroid hormone receptor (TR)-mediated transactivation by decreasing TR-complex formation on thyroid hormone response elements. ARNO promotes sequential activation of Arf6, Cdc42 and Rac1 and insulin secretion. Cytohesin acts as a PI 3-kinase effector mediating biological responses including cell spreading and adhesion, chemotaxis, protein trafficking, and cytoskeletal rearrangements, only some of which appear to depend on their ability to activate ARFs. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 118

>gnl|CDD|239873 cd04408, RhoGAP_GMIP, RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein)

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 12/145 (8%)

Query: 198 VEGILRQAADVEEVDRRVQEYEQGKTEFS-ADEDAHVIGDCVKHVLRELPSSPVP----- 251
           V+GI R +     V++  Q +E G+     +    H I   +KH L+ELP   +P     
Sbjct: 34  VQGIYRISGSKARVEKLCQAFENGRDLVDLSGHSPHDITSVLKHFLKELPEPVLPFQLYD 93

Query: 252 --ASCCTALLEAYKIDRKEARI--SAMRS--AILETFPEPNRRLLQRILRMMHTISSHAH 305
              +    L    +   +   I  + +RS   +L   P  N   L+ ++  ++ ++    
Sbjct: 94  DFIALAKELQRDSEKAAESPSIVENIIRSLKELLGRLPVSNYNTLRHLMAHLYRVAERFE 153

Query: 306 ENRMTPSAVAACMAPLLLRPLLAGE 330
           +N+M+P+ +     P LLRPL+ G+
Sbjct: 154 DNKMSPNNLGIVFGPTLLRPLVGGD 178

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 200

>gnl|CDD|241452 cd13298, PH1_PH_fungal, Fungal proteins Pleckstrin homology (PH) domain, repeat 1

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 18/108 (16%)

Query: 17  NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLN 76
           + V KSG  ++  +    K+WKKRWF+L    L ++K++     +R          I+L+
Sbjct: 4   DRVLKSG--WLLKRSRKTKTWKKRWFVLRPCQLSYYKDEKEYKLRR---------VINLS 52

Query: 77  NSGSVVVREDKKLLTVLF---PDGRDGRAFTLKAETSEDLYEWKTALE 121
              +V   +DKK   V     P     + +  +A + +D  EW  A+ 
Sbjct: 53  ELTAVAPLKDKKRKNVFAIYTPS----KNYHFQASSEKDANEWVEAIR 96

The functions of these fungal proteins are unknown, but they all contain 2 PH domains. This cd represents the first PH repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 106

>gnl|CDD|241282 cd01251, PH2_ADAP, ArfGAP with dual PH domains Pleckstrin homology (PH) domain, repeat 2

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 21/100 (21%)

Query: 36  SWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKL------ 89
            ++KRWF L    L++FK+   A P+  GE+ +   G          VRE          
Sbjct: 18  GFRKRWFTLDDRRLMYFKDPLDAFPK--GEIFI---GSKEEGYS---VREGLPAGIKGHW 69

Query: 90  ---LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126
               T++ PD    R F L AET E+  EW TA++  L +
Sbjct: 70  GFGFTLVTPD----RTFVLSAETEEERREWITAIQKVLER 105

ADAP (also called centaurin alpha) is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. This cd contains the second PH domain repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 105

>gnl|CDD|241433 cd13279, PH_Cla4_Ste20, Pleckstrin homology (PH) domain

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 10/98 (10%)

Query: 19  VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNS 78
           V KSG + +   G+    W KR+ +L   SL F+KN+ S         +L++   D++N 
Sbjct: 1   VVKSGWVSVKEDGLLSFRWSKRYLVLREQSLDFYKNESS------SSASLSIPLKDISN- 53

Query: 79  GSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEW 116
              V R D K            ++  +  ++ ++LY+W
Sbjct: 54  ---VSRTDLKPYCFEIVRKSSTKSIYISVKSDDELYDW 88

Budding yeast contain two main p21-activated kinases (PAKs), Cla4 and Ste20. The yeast Ste20 protein kinase is involved in pheromone response, though the function of Ste20 mammalian homologs is unknown. Cla4 is involved in budding and cytokinesis and interacts with Cdc42, a GTPase required for polarized cell growth as is Pak. Cla4 and Ste20 kinases share a function in localizing cell growth with respect to the septin ring. They both contain a PH domain, a Cdc42/Rac interactive binding (CRIB) domain, and a C-terminal Protein Kinase catalytic (PKc) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 91

>gnl|CDD|241296 cd01265, PH_TBC1D2A, TBC1 domain family member 2A pleckstrin homology (PH) domain

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 17/98 (17%)

Query: 26  FISSKGIGWKSWKKRWFIL--TRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNN-SGSVV 82
            + +KG+  K+WK RWF+    +  L ++++     P         LG IDL+  + S  
Sbjct: 8   KLETKGLL-KTWKSRWFVFDERKCQLYYYRSPQDITP---------LGSIDLSGAAFSYD 57

Query: 83  VREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTAL 120
              +K    +  P    GR + LKA   + +  W   L
Sbjct: 58  PEAEKGTFEIHTP----GRVYILKASDRQAMLYWLQEL 91

TBC1D2A (also called PARIS-1/Prostate antigen recognized and identified by SEREX 1 and ARMUS) contains a PH domain and a TBC-type GTPase catalytic domain. TBC1D2A integrates signaling between Arf6, Rac1, and Rab7 during junction disassembly. Activated Rac1 recruits TBC1D2A to locally inactivate Rab7 via its C-terminal TBC/RabGAP domain and facilitate E-cadherin degradation in lysosomes. The TBC1D2A PH domain mediates localization at cell-cell contacts and coprecipitates with cadherin complexes. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 101

>gnl|CDD|241421 cd13267, PH_DOCK-D, Dedicator of cytokinesis-D subfamily Pleckstrin homology (PH) domain

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 21/121 (17%)

Query: 19  VFKSGPL----FISSKGI--GWKSWKKRWFILTRTS-----LVFFKNDPSALPQRGGEVN 67
           + K G L      SS  I    KS+K+R+F L +       L F+K++ S   +      
Sbjct: 6   ITKEGYLYKGPENSSMFISLAMKSFKRRFFHLKQLVDGSYILEFYKDEKSKEAK------ 59

Query: 68  LTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127
              G I L+ S + VV+  K+         +DG+++ L AE+  ++ +W + L   L   
Sbjct: 60  ---GTIYLD-SCTGVVQNSKRRKFCFELRMQDGKSYVLAAESESEMDDWISKLNKILQIN 115

Query: 128 P 128
            
Sbjct: 116 K 116

DOCK-D subfamily (also called Zizimin subfamily) consists of Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2. DOCK-D has a N-terminal DUF3398 domain, a PH-like domain, a Dock Homology Region 1, DHR1 (also called CZH1), a C2 domain, and a C-terminal DHR2 domain (also called CZH2). Zizimin1 is enriched in the brain, lung, and kidney; zizimin2 is found in B and T lymphocytes, and zizimin3 is enriched in brain, lung, spleen and thymus. Zizimin1 functions in autoinhibition and membrane targeting. Zizimin2 is an immune-related and age-regulated guanine nucleotide exchange factor, which facilitates filopodial formation through activation of Cdc42, which results in activation of cell migration. No function has been determined for Zizimin3 to date. The N-terminal half of zizimin1 binds to the GEF domain through three distinct areas, including CZH1, to inhibit the interaction with Cdc42. In addition its PH domain binds phosphoinositides and mediates zizimin1 membrane targeting. DOCK is a family of proteins involved in intracellular signalling networks. They act as guanine nucleotide exchange factors for small G proteins of the Rho family, such as Rac and Cdc42. There are 4 subfamilies of DOCK family proteins based on their sequence homology: A-D. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 125

>gnl|CDD|239846 cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 9/146 (6%)

Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQE----YEQGKTEFSADEDAHVIGD 236
           P    + + ++EK G K EGI +    V  +  +V E    Y + ++    + +   +  
Sbjct: 21  PLVFRECIDYVEKHGMKCEGIYK----VSGIKSKVDELKAAYNRRESPNLEEYEPPTVAS 76

Query: 237 CVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRM 296
            +K  LRELP  P+         E       EA        +L+  PE NR LL  ++  
Sbjct: 77  LLKQYLRELPE-PLLTKELMPRFEEACGRPTEAEREQELQRLLKELPECNRLLLAWLIVH 135

Query: 297 MHTISSHAHENRMTPSAVAACMAPLL 322
           M  + +   E +M    ++  ++P +
Sbjct: 136 MDHVIAQELETKMNIQNISIVLSPTV 161

RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 182

>gnl|CDD|239847 cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 17/150 (11%)

Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFS-ADEDAHVIGDCVK 239
           P+ +   +  +E  G   EG+ R +    EV    +++ +GKT  + +  D HVI  C+K
Sbjct: 18  PALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRGKTVPNLSKVDIHVICGCLK 77

Query: 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLL-------QR 292
             LR L    +  +     +EA +I  ++   +A+  AI E  P+PNR  L       QR
Sbjct: 78  DFLRSLKEPLITFALWKEFMEAAEILDEDNSRAALYQAISE-LPQPNRDTLAFLILHLQR 136

Query: 293 ILRMMHTISSHAHENRMTPSAVAACMAPLL 322
           +        + + E +M  + +A    P +
Sbjct: 137 V--------AQSPECKMDINNLARVFGPTI 158

MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 193

>gnl|CDD|241451 cd13297, PH3_MyoX-like, Myosin X-like Pleckstrin homology (PH) domain, repeat 3

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 8/57 (14%)

Query: 31 GIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDK 87
            G  + KKRWF+LT  SL ++K+      +R     L LG + LN+  SVV  ++K
Sbjct: 25 KGGNLTKKKRWFVLTPNSLDYYKS-----SERNA---LKLGSLVLNSLCSVVPPDEK 73

MyoX, a MyTH-FERM myosin, is a molecular motor that has crucial functions in the transport and/or tethering of integrins in the actin-based extensions known as filopodia, microtubule binding, and in netrin-mediated axon guidance. It functions as a dimer. MyoX walks on bundles of actin, rather than single filaments, unlike the other unconventional myosins. MyoX is present in organisms ranging from humans to choanoflagellates, but not in Drosophila and Caenorhabditis elegans.MyoX consists of a N-terminal motor/head region, a neck made of 3 IQ motifs, and a tail consisting of a coiled-coil domain, a PEST region, 3 PH domains, a myosin tail homology 4 (MyTH4), and a FERM domain at its very C-terminus. The first PH domain in the MyoX tail is a split-PH domain, interupted by the second PH domain such that PH 1a and PH 1b flanks PH 2. The third PH domain (PH 3) follows the PH 1b domain. This cd contains the third MyoX PH repeat. PLEKHH3/Pleckstrin homology (PH) domain containing, family H (with MyTH4 domain) member 3 is also part of this CD and like MyoX contains a FERM domain, a MyTH4 domain, and a single PH domain. Not much is known about the function of PLEKHH3. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 123

>gnl|CDD|241442 cd13288, PH_Ses, Sesquipedalian family Pleckstrin homology (PH) domain

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 9/95 (9%)

Query: 26  FISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE 85
           ++  KG    S++KRWF+L    L +F+      P         LG I L      +  +
Sbjct: 13  YLWKKGERNTSYQKRWFVLKGNLLFYFEKKGDREP---------LGVIVLEGCTVELSED 63

Query: 86  DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTAL 120
           ++     +  DG   R++ L AE+ ED+  W  AL
Sbjct: 64  EEPYAFAIRFDGPGSRSYVLAAESQEDMESWMKAL 98

The sesquipedalian family has 2 mammalian members: Ses1 and Ses2, which are also callled 7 kDa inositol polyphosphate phosphatase-interacting protein 1 and 2. They play a role in endocytic trafficking and are required for receptor recycling from endosomes, both to the trans-Golgi network and the plasma membrane. Members of this family form homodimers and heterodimers. Sesquipedalian interacts with inositol polyphosphate 5-phosphatase OCRL-1 (INPP5F) also known as Lowe oculocerebrorenal syndrome protein, a phosphatase enzyme that is involved in actin polymerization and is found in the trans-Golgi network and INPP5B. Sesquipedalian contains a single PH domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 120

>gnl|CDD|241407 cd13253, PH1_ARAP, ArfGAP with RhoGAP domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain, repeat 1

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 19/108 (17%)

Query: 21  KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS 80
           KSG L   S   G   ++KRW +    SL +F ++     +      + L  I      +
Sbjct: 2   KSGWLDKLS-PQGNYVFQKRWVVFDGDSLRYFNSEKEMYSKG----IIPLSSIK-----T 51

Query: 81  VVVREDKK--LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126
           V    D K  ++T         R F  +AE+ ++   W + L  A+++
Sbjct: 52  VRSVGDNKFEVVT-------GNRTFVFRAESEDERNLWVSTLMAAISE 92

ARAP proteins (also called centaurin delta) are phosphatidylinositol 3,4,5-trisphosphate-dependent GTPase-activating proteins that modulate actin cytoskeleton remodeling by regulating ARF and RHO family members. They bind phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3) and phosphatidylinositol 3,4-bisphosphate (PtdIns(3,4,5)P2) binding. There are 3 mammalian ARAP proteins: ARAP1, ARAP2, and ARAP3. All ARAP proteins contain a N-terminal SAM (sterile alpha motif) domain, 5 PH domains, an ArfGAP domain, 2 ankyrin domain, A RhoGap domain, and a Ras-associating domain. This hierarchy contains the first PH domain in ARAP. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 93

>gnl|CDD|239865 cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 37/169 (21%), Positives = 70/169 (41%), Gaps = 11/169 (6%)

Query: 165 VVGRPILLALE----DIDGG--PSFLEKALRFLEKFGT-KVEGILR---QAADVEEV-DR 213
           + G P+  A+E      +G   PS + + + +L+K      EGI R    A+ ++++ +R
Sbjct: 1   IFGSPLEEAVELSSHKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKER 60

Query: 214 RVQEYEQGKTEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISA 273
              EY+      S   D H +   +K  LRELP+  +            + +   ++ + 
Sbjct: 61  FNTEYDVDLFSSSLYPDVHTVAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRAL 120

Query: 274 MRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLL 322
               ++   P+ N  LL  +   +  I  H+  N+M    V    +P L
Sbjct: 121 ELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLRNVCIVFSPTL 169

Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 190

>gnl|CDD|241425 cd13271, PH2_TAPP1_2, Tandem PH-domain-containing proteins 1 and 2 Pleckstrin homology (PH) domain, C-terminal repeat

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 13/117 (11%)

Query: 12  RPGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLG 71
           R  A   V KSG  +   +G   K+WK+R+FIL   ++ ++K++    P R         
Sbjct: 1   RQPAGRNVIKSG--YCVKQGAVRKNWKRRYFILDDNTISYYKSETDKEPLR--------- 49

Query: 72  GIDLNNSGSVVVREDKKLLT--VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126
            I L     V       LL    LF      R F ++A++ ED++ W  A+  A+  
Sbjct: 50  TIPLKEVLKVHECLSGDLLMRDNLFEIITTSRTFYIQADSPEDMHSWIKAISGAIVA 106

The binding of TAPP1 (also called PLEKHA1/pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1) and TAPP2 (also called PLEKHA2) adaptors to PtdIns(3,4)P(2), but not PI(3,4, 5)P3, function as negative regulators of insulin and PI3K signalling pathways (i.e. TAPP/utrophin/syntrophin complex). TAPP1 and TAPP2 contain two sequential PH domains in which the C-terminal PH domain specifically binds PtdIns(3,4)P2 with high affinity. The N-terminal PH domain does not interact with any phosphoinositide tested. They also contain a C-terminal PDZ-binding motif that interacts with several PDZ-binding proteins, including PTPN13 (known previously as PTPL1 or FAP-1) as well as the scaffolding proteins MUPP1 (multiple PDZ-domain-containing protein 1), syntrophin and utrophin. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|241438 cd13284, PH_OSBP_ORP4, Human Oxysterol binding protein and OSBP-related protein 4 Pleckstrin homology (PH) domain

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 12/97 (12%)

Query: 35  KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF 94
           K +++RWF+L+   L +++N          E+  T  G  +N +G+++  ED     V+ 
Sbjct: 13  KGYQRRWFVLSNGLLSYYRNQ--------AEMAHTCRG-TINLAGALIHTEDSCNF-VIS 62

Query: 95  PDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAA 131
             G   + F LKA +  +   W TALELA A+A    
Sbjct: 63  NGGT--QTFHLKASSEVERQRWVTALELAKAKAIRLR 97

Human OSBP is proposed to function is sterol-dependent regulation of ERK dephosphorylation and sphingomyelin synthesis as well as modulation of insulin signaling and hepatic lipogenesis. It contains a N-terminal PH domain, a FFAT motif (two phenylalanines in an acidic tract), and a C-terminal OSBP-related domain. OSBPs and Osh1p PH domains specifically localize to the Golgi apparatus in a PtdIns4P-dependent manner. ORP4 is proposed to function in Vimentin-dependent sterol transport and/or signaling. Human ORP4 has 2 forms, a long (ORP4L) and a short (ORP4S). ORP4L contains a N-terminal PH domain, a FFAT motif (two phenylalanines in an acidic tract), and a C-terminal OSBP-related domain. ORP4S is truncated and contains only an OSBP-related domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. They are members of the oxysterol binding protein (OSBP) family which includes OSBP, OSBP-related proteins (ORP), Goodpasture antigen binding protein (GPBP), and Four phosphate adaptor protein 1 (FAPP1). They have a wide range of purported functions including sterol transport, cell cycle control, pollen development and vessicle transport from Golgi recognize both PI lipids and ARF proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 99

>gnl|CDD|241404 cd13250, PH_ACAP, ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 33/120 (27%)

Query: 21  KSGPLFI-SSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSG 79
           K G LF  SS     K+WK+RWF +    LV+ K                          
Sbjct: 1   KEGYLFKRSSNAF--KTWKRRWFSIQNGQLVYQKRF--------------------KKDT 38

Query: 80  SVVVREDKKLLTVLFPDGRD----------GRAFTLKAETSEDLYEWKTALELALAQAPS 129
             VV ED +L TV   +  D           +++ L+AE+ ED   W  A++ A+A A +
Sbjct: 39  PTVVVEDLRLCTVKPCEDIDRRFCFEVVSPTKSYMLQAESEEDRQAWIQAIQAAIASALN 98

ACAP (also called centaurin beta) functions both as a Rab35 effector and as an Arf6-GTPase-activating protein (GAP) by which it controls actin remodeling and membrane trafficking. ACAP contain an NH2-terminal bin/amphiphysin/Rvs (BAR) domain, a phospholipid-binding domain, a PH domain, a GAP domain, and four ankyrin repeats. The AZAPs constitute a family of Arf GAPs that are characterized by an NH2-terminal pleckstrin homology (PH) domain and a central Arf GAP domain followed by two or more ankyrin repeats. On the basis of sequence and domain organization, the AZAP family is further subdivided into four subfamilies: 1) the ACAPs contain an NH2-terminal bin/amphiphysin/Rvs (BAR) domain (a phospholipid-binding domain that is thought to sense membrane curvature), a single PH domain followed by the GAP domain, and four ankyrin repeats; 2) the ASAPs also contain an NH2-terminal BAR domain, the tandem PH domain/GAP domain, three ankyrin repeats, two proline-rich regions, and a COOH-terminal Src homology 3 domain; 3) the AGAPs contain an NH2-terminal GTPase-like domain (GLD), a split PH domain, and the GAP domain followed by four ankyrin repeats; and 4) the ARAPs contain both an Arf GAP domain and a Rho GAP domain, as well as an NH2-terminal sterile-a motif (SAM), a proline-rich region, a GTPase-binding domain, and five PH domains. PMID 18003747 and 19055940 Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 98

>gnl|CDD|241401 cd13247, BAR-PH_APPL, Adaptor protein containing PH domain, PTB domain, and Leucine zipper motif Bin1/amphiphysin/Rvs167 (BAR)-Pleckstrin homology (PH) domain

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 15/117 (12%)

Query: 7   PFERPRPGASNTVFKSGPLFISSKGIG-WKSWKKRWFILTRTSLVFFKNDPSALPQRGGE 65
           P E       +   K+G LF+ SK       W + +F     +L+    D  A    G  
Sbjct: 15  PDETYLAPNRSLTQKAGYLFLRSKTGLVTNRWDRVYFFTQGGNLMSQPRDEVA----GSL 70

Query: 66  VNLTLGGIDLNNSGSVVVREDKK--LLTVLFPDGRDGRAFTLKAETSEDLYEWKTAL 120
           V      +DL+N+       + +  +  +  PDG+  +A  L+AE+ +D  EW   +
Sbjct: 71  V------LDLDNTSVQAADCEDRRFVFQITSPDGK--KAIVLQAESEKDREEWIATI 119

APPL (also called DCC-interacting protein (DIP)-13alpha) interacts with oncoprotein serine/threonine kinase AKT2, tumor suppressor protein DCC (deleted in colorectal cancer), Rab5, GIPC (GAIP-interacting protein, C terminus), human follicle-stimulating hormone receptor (FSHR), and the adiponectin receptors AdipoR1 and AdipoR2. There are two isoforms of human APPL: APPL1 and APPL2, which share about 50% sequence identity. APPL has a BAR and a PH domain near its N terminus, and the two domains are thought to function as a unit (BAR-PH domain). C-terminal to this is a PTB domain. Lipid binding assays show that the BAR, PH, and PTB domains can bind phospholipids. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 125

>gnl|CDD|241369 cd13215, PH-GRAM1_AGT26, Autophagy-related protein 26/Sterol 3-beta-glucosyltransferase Pleckstrin homology (PH) domain, repeat 1

 Score = 40.2 bits (95), Expect = 6e-04
 Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 15/108 (13%)

Query: 16  SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSAL--PQRGGEVNLTLGGI 73
              V KSG L    K      + + WF+L    L ++    + L  P          G I
Sbjct: 26  EGEVVKSGYLSKRGKRT--PRYNRYWFVLKGDVLSWY-RSSTDLYFPH---------GTI 73

Query: 74  DLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALE 121
           DL    S  +  DK   T  F    + R +T KA++     EW  AL+
Sbjct: 74  DLRYGISAEI-TDKDKETTHFKITTNSRTYTFKADSEPSAKEWVKALQ 120

ATG26 (also called UGT51/UDP-glycosyltransferase 51), a member of the glycosyltransferase 28 family, resulting in the biosynthesis of sterol glucoside. ATG26 in decane metabolism and autophagy. There are 32 known autophagy-related (ATG) proteins, 17 are components of the core autophagic machinery essential for all autophagy-related pathways and 15 are the additional components required only for certain pathways or species. The core autophagic machinery includes 1) the ATG9 cycling system (ATG1, ATG2, ATG9, ATG13, ATG18, and ATG27), 2) the phosphatidylinositol 3-kinase complex (ATG6/VPS30, ATG14, VPS15, and ATG34), and 3) the ubiquitin-like protein system (ATG3, ATG4, ATG5, ATG7, ATG8, ATG10, ATG12, and ATG16). Less is known about how the core machinery is adapted or modulated with additional components to accommodate the nonselective sequestration of bulk cytosol (autophagosome formation) or selective sequestration of specific cargos (Cvt vesicle, pexophagosome, or bacteria-containing autophagosome formation). The pexophagosome-specific additions include the ATG30-ATG11-ATG17 receptor-adaptors complex, the coiled-coil protein ATG25, and the sterol glucosyltransferase ATG26. ATG26 is necessary for the degradation of medium peroxisomes. It contains 2 GRAM domains and a single PH domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 130

>gnl|CDD|241419 cd13265, PH_evt, Evectin Pleckstrin homology (PH) domain

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 6/91 (6%)

Query: 35  KSWKKRWFIL-TRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNS---GSVVVREDKKLL 90
           K WKK WF+L +   L +++ D S      G +N+ +   ++        V   E +   
Sbjct: 17  KRWKKNWFVLYSDGELSYYE-DESRR-DVEGRINMPIECRNIRVGLECRDVQPPEGRSRD 74

Query: 91  TVLFPDGRDGRAFTLKAETSEDLYEWKTALE 121
            +L    RDG+   L AE+++D   WK ALE
Sbjct: 75  CLLQIVTRDGKRLILCAESADDALAWKLALE 105

There are 2 members of the evectin family (also called pleckstrin homology domain containing, family B): evt-1 (also called PLEKHB1) and evt-2 (also called PLEKHB2). evt-1 is specific to the nervous system, where it is expressed in photoreceptors and myelinating glia. evt-2 is widely expressed in both neural and nonneural tissues. Evectins possess a single N-terminal PH domain and a C-terminal hydrophobic region. evt-1 is thought to function as a mediator of post-Golgi trafficking in cells that produce large membrane-rich organelles. It is a candidate gene for the inherited human retinopathy autosomal dominant familial exudative vitreoretinopathy and a susceptibility gene for multiple sclerosis. evt-2 is essential for retrograde endosomal membrane transport from the plasma membrane (PM) to the Golgi. Two membrane trafficking pathways pass through recycling endosomes: a recycling pathway and a retrograde pathway that links the PM to the Golgi/ER. Its PH domain that is unique in that it specifically recognizes phosphatidylserine (PS), but not polyphosphoinositides. PS is an anionic phospholipid class in eukaryotic biomembranes, is highly enriched in the PM, and plays key roles in various physiological processes such as the coagulation cascade, recruitment and activation of signaling molecules, and clearance of apoptotic cells. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 108

>gnl|CDD|241287 cd01256, PH_dynamin, Dynamin pleckstrin homology (PH) domain

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)

Query: 17  NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLN 76
           N V + G L I++ G      K+ WF+LT  SL ++K++     ++  +  L L  + L 
Sbjct: 1   NQVIRKGWLTINNIGFMKGGSKEYWFVLTAESLSWYKDE----EEKEKKYMLPLDNLKLR 56

Query: 77  N--SGSVVVREDKKLLTVLF-PDGR----DGRAFTLKAETSEDLYEWKTAL 120
           +   G +      K +  LF  D R    D +   L  ET E++  WK + 
Sbjct: 57  DVEKGFM----SSKHIFALFNTDQRNVYKDYKQLELSCETQEEVDSWKASF 103

Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 112

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	689
KOG4271	1100	consensus Rho-GTPase activating protein [Signal tr	100.0
cd04372	194	RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-	100.0
cd04402	192	RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-ac	100.0
cd04386	203	RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activa	100.0
cd04390	199	RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPas	100.0
cd04391	216	RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-ac	100.0
cd04407	186	RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPas	100.0
cd04375	220	RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator	100.0
cd04381	182	RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activa	100.0
KOG1451	812	consensus Oligophrenin-1 and related Rho GTPase-ac	100.0
cd04384	195	RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activato	100.0
cd04397	213	RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activato	100.0
cd04383	188	RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activato	100.0
cd04403	187	RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: G	100.0
cd04404	195	RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-	100.0
cd04395	196	RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-ac	100.0
cd04406	186	RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPas	100.0
cd04408	200	RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator	100.0
cd04394	202	RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-	100.0
cd04396	225	RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPas	100.0
cd04376	206	RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-acti	100.0
cd04398	192	RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activato	100.0
cd04377	186	RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-	100.0
cd04378	203	RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPas	100.0
cd04400	190	RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activato	100.0
cd04373	185	RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator	100.0
cd04409	211	RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activato	100.0
cd04393	189	RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-ac	100.0
cd04387	196	RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator pr	100.0
cd04392	208	RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-ac	100.0
cd04379	207	RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator	100.0
cd04385	184	RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator	100.0
cd04382	193	RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-	100.0
KOG4407	1973	consensus Predicted Rho GTPase-activating protein	100.0
cd04389	187	RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator	100.0
cd04399	212	RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activato	100.0
cd04374	203	RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein	100.0
cd04388	200	RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator pr	100.0
KOG1450	650	consensus Predicted Rho GTPase-activating protein	100.0
smart00324	174	RhoGAP GTPase-activator protein for Rho-like GTPas	99.98
KOG1117	1186	consensus Rho- and Arf-GTPase activating protein A	99.98
KOG4270	577	consensus GTPase-activator protein [Signal transdu	99.97
KOG2200	674	consensus Tumour suppressor protein p122-RhoGAP/DL	99.97
cd04380	220	RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activato	99.97
cd00159	169	RhoGAP RhoGAP: GTPase-activator protein (GAP) for	99.97
KOG4269	1112	consensus Rac GTPase-activating protein BCR/ABR [S	99.96
KOG4406	467	consensus CDC42 Rho GTPase-activating protein [Sig	99.96
PF00620	151	RhoGAP: RhoGAP domain; InterPro: IPR000198 Members	99.96
KOG2710	412	consensus Rho GTPase-activating protein [Signal tr	99.95
KOG4724	741	consensus Predicted Rho GTPase-activating protein	99.94
KOG1453	918	consensus Chimaerin and related Rho GTPase activat	99.91
KOG3564	604	consensus GTPase-activating protein [General funct	99.9
KOG4271	1100	consensus Rho-GTPase activating protein [Signal tr	99.76
KOG1452	442	consensus Predicted Rho GTPase-activating protein	99.72
cd01233	100	Unc104 Unc-104 pleckstrin homology (PH) domain. Un	99.71
cd04405	235	RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPas	99.68
cd01251	103	PH_centaurin_alpha Centaurin alpha Pleckstrin homo	99.68
cd01264	101	PH_melted Melted pleckstrin homology (PH) domain.	99.66
cd01260	96	PH_CNK Connector enhancer of KSR (Kinase suppresso	99.63
cd01265	95	PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain	99.62
cd01238	106	PH_Tec Tec pleckstrin homology (PH) domain. Tec pl	99.62
cd01252	125	PH_cytohesin Cytohesin Pleckstrin homology (PH) do	99.61
cd01235	101	PH_SETbf Set binding factor Pleckstrin Homology (P	99.6
cd01247	91	PH_GPBP Goodpasture antigen binding protein (GPBP)	99.57
cd04401	198	RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activato	99.56
cd01241	102	PH_Akt Akt pleckstrin homology (PH) domain. Akt pl	99.54
cd01236	104	PH_outspread Outspread Pleckstrin homology (PH) do	99.54
cd01266	108	PH_Gab Gab (Grb2-associated binder) pleckstrin hom	99.5
cd01257	101	PH_IRS Insulin receptor substrate (IRS) pleckstrin	99.5
cd01246	91	PH_oxysterol_bp Oxysterol binding protein (OSBP) P	99.49
cd01250	94	PH_centaurin Centaurin Pleckstrin homology (PH) do	99.47
PF14389	88	Lzipper-MIP1: Leucine-zipper of ternary complex fa	99.43
cd01245	98	PH_RasGAP_CG5898 RAS GTPase-activating protein (GA	99.41
cd01263	122	PH_anillin Anillin Pleckstrin homology (PH) domain	99.41
cd01244	98	PH_RasGAP_CG9209 RAS_GTPase activating protein (GA	99.4
PF00169	104	PH: PH domain; InterPro: IPR001849 The pleckstrin	99.39
cd01230	117	PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6	99.3
cd01253	104	PH_beta_spectrin Beta-spectrin pleckstrin homology	99.29
KOG0930	395	consensus Guanine nucleotide exchange factor Cytoh	99.26
PF15413	112	PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FE	99.23
KOG4370	514	consensus Ral-GTPase effector RLIP76 [Signal trans	99.2
cd01237	106	Unc112 Unc-112 pleckstrin homology (PH) domain. Un	99.16
KOG3565	640	consensus Cdc42-interacting protein CIP4 [Cytoskel	99.13
PF15409	89	PH_8: Pleckstrin homology domain	99.12
cd01219	101	PH_FGD FGD (faciogenital dysplasia protein) plecks	99.11
cd01254	121	PH_PLD Phospholipase D (PLD) pleckstrin homology (	99.11
PF15410	119	PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN	99.07
smart00233	102	PH Pleckstrin homology domain. Domain commonly fou	99.04
KOG0690	516	consensus Serine/threonine protein kinase [Signal	98.84
cd00821	96	PH Pleckstrin homology (PH) domain. Pleckstrin hom	98.83
cd01249	104	PH_oligophrenin Oligophrenin Pleckstrin homology (	98.81
cd01256	110	PH_dynamin Dynamin pleckstrin homology (PH) domain	98.8
cd00900	99	PH-like Pleckstrin homology-like domain. Pleckstri	98.79
cd01234	117	PH_CADPS CADPS (Ca2+-dependent activator protein)	98.68
KOG4724	741	consensus Predicted Rho GTPase-activating protein	98.67
cd01220	99	PH_CDEP Chondrocyte-derived ezrin-like domain cont	98.61
cd01243	122	PH_MRCK MRCK (myotonic dystrophy-related Cdc42-bin	98.59
KOG1090	1732	consensus Predicted dual-specificity phosphatase [	98.59
cd01259	114	PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor pr	98.59
cd01242	112	PH_ROK Rok (Rho- associated kinase) pleckstrin hom	98.43
KOG3640	1116	consensus Actin binding protein Anillin [Cell cycl	98.36
PF14593	104	PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.	98.25
PF08101	420	DUF1708: Domain of unknown function (DUF1708); Int	98.21
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	97.96
KOG3751	622	consensus Growth factor receptor-bound proteins (G	97.94
KOG0932	774	consensus Guanine nucleotide exchange factor EFA6	97.81
cd01239	117	PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin hom	97.73
PLN00188	719	enhanced disease resistance protein (EDR2); Provis	97.67
cd01218	104	PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain	97.67
cd01258	108	PH_syntrophin Syntrophin pleckstrin homology (PH)	97.59
cd01261	112	PH_SOS Son of Sevenless (SOS) Pleckstrin homology	97.58
PTZ00267	478	NIMA-related protein kinase; Provisional	97.51
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.38
KOG0248	936	consensus Cytoplasmic protein Max-1, contains PH,	96.9
cd01262	89	PH_PDK1 3-Phosphoinositide dependent protein kinas	96.88
KOG3723	851	consensus PH domain protein Melted [Signal transdu	96.69
PF12814	123	Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin	96.63
cd01222	97	PH_clg Clg (common-site lymphoma/leukemia guanine	96.53
KOG3543	1218	consensus Ca2+-dependent activator protein [Signal	96.5
PLN02866	1068	phospholipase D	96.47
PTZ00283	496	serine/threonine protein kinase; Provisional	96.46
PF15408	104	PH_7: Pleckstrin homology domain	96.43
KOG1453	918	consensus Chimaerin and related Rho GTPase activat	96.31
KOG1739	611	consensus Serine/threonine protein kinase GPBP [Si	96.3
KOG3531	1036	consensus Rho guanine nucleotide exchange factor C	96.22
cd01240	116	PH_beta-ARK Beta adrenergic receptor kinase 1(beta	96.0
cd01224	109	PH_Collybistin Collybistin pleckstrin homology (PH	94.9
PF15406	112	PH_6: Pleckstrin homology domain	94.89
KOG4424	623	consensus Predicted Rho/Rac guanine nucleotide exc	94.8
cd01228	96	PH_BCR-related BCR (breakpoint cluster region)-rel	94.76
cd01221	125	PH_ephexin Ephexin Pleckstrin homology (PH) domain	94.04
PF15404	185	PH_4: Pleckstrin homology domain	93.97
cd01232	114	PH_TRIO Trio pleckstrin homology (PH) domain. Trio	93.92
KOG1449	670	consensus Predicted Rho GTPase-activating protein	93.55
KOG1449	670	consensus Predicted Rho GTPase-activating protein	92.68
KOG1117	1186	consensus Rho- and Arf-GTPase activating protein A	92.16
KOG1737	799	consensus Oxysterol-binding protein [Lipid transpo	91.24
cd01227	133	PH_Dbs Dbs (DBL's big sister) pleckstrin homology	90.4
cd01226	100	PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin	90.22
cd01231	107	PH_Lnk LNK-family Pleckstrin homology (PH) domain.	89.75
KOG3549	505	consensus Syntrophins (type gamma) [Extracellular	89.65
PF15405	135	PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.	88.75
cd01223	116	PH_Vav Vav pleckstrin homology (PH) domain. Vav pl	88.59
KOG1738	638	consensus Membrane-associated guanylate kinase-int	87.09
PF07820	92	TraC: TraC-like protein; InterPro: IPR012930 The m	86.97
cd01225	111	PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-	86.36
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	86.36
PF15411	116	PH_10: Pleckstrin homology domain	84.12
KOG4047	429	consensus Docking protein 1 (p62dok) [Signal trans	83.93
KOG3551	506	consensus Syntrophins (type beta) [Extracellular s	82.04
KOG0517	2473	consensus Beta-spectrin [Cytoskeleton]	80.45

>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]

Probab=100.00  E-value=3e-50  Score=452.68  Aligned_cols=565  Identities=31%  Similarity=0.355  Sum_probs=470.5

Q ss_pred             CCCCcEEEEEecChHHHHHHHHHHHHHHhhCCcc-hhccCccccccCCCCccccCc-cccccCCCCCCCcccccchHHHh
Q 005588           97 GRDGRAFTLKAETSEDLYEWKTALELALAQAPSA-ALVMGHNGIFRNDTNDTIEGS-FHQWRDKRPVKSLVVGRPILLAL  174 (689)
Q Consensus        97 ~~~~rty~fqAdSeeE~~eWi~AL~~ai~~aP~~-~~~~g~~~~f~~~~~~~~~~~-~~~~k~~~~~~~~vFG~pL~~ll  174 (689)
                      ..+.+.+...+++.++..+|-.++..+..+||.. +.+++|.|+|+.++..+..+. +..+++..++.+.+||+|..-.+
T Consensus       286 ~~~a~~fsdKmeti~d~le~e~rye~~~~~Aperdalil~higfv~~~t~~tc~s~~~c~d~~~t~llss~~~rps~g~l  365 (1100)
T KOG4271|consen  286 ELDAKPFSDKMETIQDVLEEEARYEAALKQAPERDALILKHIGFVYHPTKETCPSCPACVDAKITPLLSSVLGRPSLGAL  365 (1100)
T ss_pred             hhccccccchhHHHHHHHHhHHHHHHHHHhCcchhhhhhhcCceeeCCCCCCCCCccchhhhccchhhhhhhcCcchhhh
Confidence            3457788899999999999999999999999999 899999999999988877664 77788889999999999999999


Q ss_pred             hhCCCCcHHHHHHHHHHHhcCCCcCC---eeecCC-CHHHHHHHHHHhh-cCCccC--CCCCCcc--cchhhHH--HHhh
Q 005588          175 EDIDGGPSFLEKALRFLEKFGTKVEG---ILRQAA-DVEEVDRRVQEYE-QGKTEF--SADEDAH--VIGDCVK--HVLR  243 (689)
Q Consensus       175 ~~~~~VP~iL~~~i~~Le~~Gl~~EG---IFR~sG-~~~~v~~L~~~ld-~g~~~~--~~~~Dvh--~VAslLK--~fLR  243 (689)
                      +..++-|.+..+.+.+|..+|+..||   |-|+++ ++..|+.-...|+ .|...+  ....+||  .|...++  .-||
T Consensus       366 e~~d~sp~~~~knL~~l~~~Gl~~E~~n~I~~qsa~D~~~id~kiyE~s~dgkt~~~v~~~~~ph~s~v~e~Ie~~~~lr  445 (1100)
T KOG4271|consen  366 ENSDGSPNIDEKNLVILGKDGLAGEGANEIRRQSADDVYVIDGKIYELSIDGKTRLPVNSFQQPHLSYVGESIEKSHSLR  445 (1100)
T ss_pred             hhhcCCcccchhhhhhhhhcccchhhhHHHHHhcccchhhhhhhhhhcccccccccchhhhcCcchhHHHhhhhhhhhhh
Confidence            99999999999999999999999999   999999 7888887777775 565433  3345898  6888888  8899


Q ss_pred             hCCCCCCChhhHHHHHHH--HhcCCHHHHHHHHHHHHhcc--CChhHHH----HHHHHHHHHHHhhcccCCCCCCcc-ch
Q 005588          244 ELPSSPVPASCCTALLEA--YKIDRKEARISAMRSAILET--FPEPNRR----LLQRILRMMHTISSHAHENRMTPS-AV  314 (689)
Q Consensus       244 eLPePLlp~~ly~~~i~~--~~~~~~e~ri~~l~~lIl~~--LP~~N~~----lL~~Ll~~L~~Va~~s~~NkMta~-NL  314 (689)
                      .++..+.|..+|..+..+  +...-.+.++..++..|++.  .|.+|+.    ++.+|+.+++.+..++..|.|++. ..
T Consensus       446 ~~~~~~~~~~~C~~ld~a~gY~~~~Ne~riss~~~aices~~~p~pnnk~~~d~~LRivm~m~~g~~~s~~ni~n~~~~s  525 (1100)
T KOG4271|consen  446 QQGQQIAPKLQCVFLDEASGYGRDINEKRISSVLKAICESRNSPEPNNKDLADLDLRIVMCMMCGDPFSADNILNPVLAS  525 (1100)
T ss_pred             hcccccCCccccccccccccccccccHHHHHHHHHHHHhhcCCCccccchhHHHHHHHHHHHhcCCchhhhhhcChhhHH
Confidence            999999999999887777  55555678999999999888  8999888    899999999999999999999999 99


Q ss_pred             hhhhcc-cccC-CCCCCCCccccc-cCCCCCchHH----HHHHHHHHH-HHHHHHHHHHHhccccCCCCCcccccCCCCC
Q 005588          315 AACMAP-LLLR-PLLAGECELEDD-FDMNGDNSAQ----LLAAANAAN-NAQAIIATLLEEYENIFDDESLHRCSISADS  386 (689)
Q Consensus       315 AivfaP-~Llr-~~~~~~~~le~~-~~~~g~~~~~----l~~~~~~~~-~~~~iVe~LIen~~~IF~~~~~~~~~~s~~~  386 (689)
                      +.|.+| .|++ |-..+.|.++.. |+..|+...+    ++.+...++ .++.+|-.+++.|..||.+..+..+..+..+
T Consensus       526 ~aCkS~~llL~~pI~~~krrie~~~f~v~~de~vh~~~~~~sA~~~An~~aQ~iI~~~l~D~~si~~~~gl~~~~~s~~s  605 (1100)
T KOG4271|consen  526 AACKSPHLLLRLPIGAGKRRIELSSFDVRKDELVHGYIVLYSAKRKANMEAQDIIPVALTDYASIFLDNGLSREQLSEGS  605 (1100)
T ss_pred             HHhcChHHHHhcccccccceecccccccccchhHHHHHHHHHHHhhccchHhhhhhHHhhcchhhhcccchhhhhccccc
Confidence            999999 5777 666889999887 9999999998    888887777 5999999999999999999988777776665


Q ss_pred             CCCCCCC--CCCCccccccccCCCCCCCCCCCCCCCCCCcccccCCCCcccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 005588          387 HVDNSGS--EDSSDEENLDMKNNGYHDAQNEVDPESDDDPERAHSGKLSESSGYAGSDLYDYKALGGDDSDVGSPRNNNA  464 (689)
Q Consensus       387 ~~~~s~~--e~ssd~~~~~~~d~s~~s~e~e~~~~~d~~~e~~~~~~~se~s~~~~~d~~~~~~~~~~~~~~~~~~~~~~  464 (689)
                      .+..+..  .++.+.+.+...-..-.+..++++-....++.........|.+..+.+|.+.|.+++.+|++.+++++-.+
T Consensus       606 ~iats~pl~q~~~~~es~~~~~~D~~e~~im~e~s~~~dn~~~a~~~tee~~~~Sp~~s~~~~~~~~~d~d~ds~p~~Sp  685 (1100)
T KOG4271|consen  606 EIATSIPLSQPSHKLESFTPFFSDVVEKKIMIEGSHMSDNAAEACSTTEEVFNFSPRDSSPYCNSNLQDSDEDSPPSYSP  685 (1100)
T ss_pred             ccccccccCCCchhccccccccccccchhhccccccCCccccccccCchhhcCCChhhcccccCCCccccCCCCCCCcCC
Confidence            5553332  44444444444444444444444444444444446677788888899999999999999999999998888


Q ss_pred             ccccCCCCCCCCCCCCCCChhHHhhhhcccCCCCccccccccccCCCCccccccccccccCCCCCCCC-CCCCCcccCcC
Q 005588          465 SAESSKLPIDPIQIGDPGDQVVEQQGKQKKGNENSITEMEVSSVLPAGESYHSMGEILSSVDPGHPLS-VSGLESSAEKP  543 (689)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  543 (689)
                      ..+.++++..+...|.+.+.+                .+...++....+.+++..+|+....|+.|.+ ++.....+.|+
T Consensus       686 ~~e~t~lsst~k~~S~~~~d~----------------g~~~~~i~~~~~n~~~~r~i~~Vs~pi~Pk~vs~dvt~~a~kp  749 (1100)
T KOG4271|consen  686 FREDTSLSSTSKDHSKLSMDL----------------GGNDVGISFTMNNFESKRNINKVSPPIKPKAVSPDVTFDATKP  749 (1100)
T ss_pred             ccCcccccCCccccccccccc----------------cCCCCCcccccchhHhhhhcccCCCCCCCCcCCCCcccccccC
Confidence            888888877765444332211                1223345556677788888888888887776 56677788888


Q ss_pred             CC-CCCCCCCCCCcccccccCcccCCCCcccCCCChhHHHHHhH-----hhhhhHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 005588          544 VG-KGTSSNFSAKRSAFWGRSNARKTSSVESIDSSGEEELAIQR-----LEITKNDLRHRIAKEARGNAILQASLERRKQ  617 (689)
Q Consensus       544 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  617 (689)
                      .. -+.++...++|...|||+.+.|++.+|++|.+++|++.|||     ++.+|.|+|+||+||+|+|+.||||+||||+
T Consensus       750 ~~sls~asi~~~~Rks~~~~~~g~~~l~~es~~~s~eD~~~~~r~e~~ni~~~k~dsq~Ri~k~~k~~~~~QaSder~nk  829 (1100)
T KOG4271|consen  750 DLSLSDASIRDGQRKSVSGRTWGPKDLFDESDYASPEDAVVKPRNEEENIYSVKDDSQQRIIKEIKNNNKLQASDERRNK  829 (1100)
T ss_pred             cccccccccccCccccccCCCCCcccCCchhcccCcchhhhcccccccceeecchhhhhHHHHHhhcchhhhhhhhhccc
Confidence            44 44466677888899999999999999999999999999999     9999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhh--ccCCCcccCCCccCCccccchhHHHHHH
Q 005588          618 ALHERRLALE-QDVSRLQEQLQAERDLRAALEVG--LSMSSGQFSSSRGMDSKVCTDHKRFVSF  678 (689)
Q Consensus       618 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g--l~~~~~~~~~~~~~d~~~~~~lee~~~~  678 (689)
                      ++|+||++|| +++.|||+++|++|+.|.|...|  |..+.|+.. ...-|+||+|+||++.+.
T Consensus       830 s~~~~rts~E~~ekgr~rs~~qapr~~rka~~k~~~lt~~~~~~d-~~~~~sktskkl~k~k~a  892 (1100)
T KOG4271|consen  830 SDSERRTSLEFLEKGRLRSIVQAPRLYRKACLKGGLLTNSAGGSD-LSAGPSKTSKKLEKNKLA  892 (1100)
T ss_pred             ccccccccccHhhhhhhhhccccchhHHHHHHhccCccccccccc-cccCcccchHHHhhhccc
Confidence            9999999999 89999999999999999999999  888999874 678899999999998753

>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins

Probab=100.00  E-value=6.7e-41  Score=334.91  Aligned_cols=189  Identities=20%  Similarity=0.376  Sum_probs=168.8

Q ss_pred             cccchHHHhhhCC-CCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcC-C-ccCC--CCCCcccchhhHHH
Q 005588          166 VGRPILLALEDID-GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-K-TEFS--ADEDAHVIGDCVKH  240 (689)
Q Consensus       166 FG~pL~~ll~~~~-~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g-~-~~~~--~~~Dvh~VAslLK~  240 (689)
                      ||+||..++++.+ .||.+|.+|+.||+++|+.+|||||++|+..+|+++++.|+++ . .++.  ...|+|+||++||.
T Consensus         1 FG~~L~~~~~~~~~~iP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lLK~   80 (194)
T cd04372           1 YGCDLTTLVKAHNTQRPMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGALKL   80 (194)
T ss_pred             CCCChHHHHHHcCCCCChHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHHHHHH
Confidence            9999999999854 6999999999999999999999999999999999999999974 3 3332  23589999999999


Q ss_pred             HhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcc
Q 005588          241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP  320 (689)
Q Consensus       241 fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP  320 (689)
                      |||+||+||||.++|+.|+++.+..+..+++..++.++ .+||+.|+.+|+||+.||++|++|++.||||+.|||+||||
T Consensus        81 flReLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLaivf~P  159 (194)
T cd04372          81 YFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEAL-MLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFGP  159 (194)
T ss_pred             HHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhc
Confidence            99999999999999999999999888899999999976 59999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 005588          321 LLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF  372 (689)
Q Consensus       321 ~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF  372 (689)
                      +|+|++...                 ..+.+......+.+|++||+||+.||
T Consensus       160 ~Ll~~~~~~-----------------~~~~~~~~~~~~~iv~~LI~~~~~iF  194 (194)
T cd04372         160 TLMRPPEDS-----------------ALTTLNDMRYQILIVQLLITNEDVLF  194 (194)
T ss_pred             ccCCCCCcc-----------------HHHHHHhHHHHHHHHHHHHHhhHhhC
Confidence            999987311                 02233445667899999999999998

Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT

>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins

Probab=100.00  E-value=6.3e-41  Score=334.59  Aligned_cols=192  Identities=23%  Similarity=0.423  Sum_probs=176.0

Q ss_pred             ccccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCccCCCCCCcccchhhHHHHhhh
Q 005588          165 VVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRE  244 (689)
Q Consensus       165 vFG~pL~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~Dvh~VAslLK~fLRe  244 (689)
                      +||+||..+++ ++.||.+|.+|+.||+++|+.+|||||++|+..+++++++.+++|.......+|+|+||++||.|||+
T Consensus         1 ~FG~~L~~~~~-~~~vP~~i~~~i~~l~~~g~~~eGiFR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~va~~lK~flre   79 (192)
T cd04402           1 LFGQPLSNICE-DDNLPKPILDMLSLLYQKGPSTEGIFRRSANAKACKELKEKLNSGVEVDLKAEPVLLLASVLKDFLRN   79 (192)
T ss_pred             CCCCcHHHHhC-CCCCCHHHHHHHHHHHHhCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCCccCCHHHHHHHHHHHHHh
Confidence            69999999999 67899999999999999999999999999999999999999999986656789999999999999999


Q ss_pred             CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccC
Q 005588          245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR  324 (689)
Q Consensus       245 LPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr  324 (689)
                      ||+||+|.+.|+.|+.++...+.+.++..++.++ .+||+.|+.+|+||+.||++|+.+++.|+||++|||+||||+|||
T Consensus        80 LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i-~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP~l~~  158 (192)
T cd04402          80 IPGSLLSSDLYEEWMSALDQENEEEKIAELQRLL-DKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPSLLW  158 (192)
T ss_pred             CCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhccccccC
Confidence            9999999999999999998888899999999976 699999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005588          325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES  376 (689)
Q Consensus       325 ~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~~~  376 (689)
                      ++..+                  ...+.....+..+|++||+||+.||+++.
T Consensus       159 ~~~~~------------------~~~~~~~~~~~~~~~~LI~~~~~IF~~~~  192 (192)
T cd04402         159 PPASS------------------ELQNEDLKKVTSLVQFLIENCQEIFGEDI  192 (192)
T ss_pred             CCCcc------------------HHHHHHHHhhhHHHHHHHHhHHHhCCCCC
Confidence            87321                  01234456688999999999999999863

ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins

Probab=100.00  E-value=1.2e-40  Score=335.21  Aligned_cols=197  Identities=22%  Similarity=0.348  Sum_probs=174.8

Q ss_pred             CcccccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCccC---CCCCCcccchhhH
Q 005588          163 SLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF---SADEDAHVIGDCV  238 (689)
Q Consensus       163 ~~vFG~pL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~---~~~~Dvh~VAslL  238 (689)
                      +++||+||..++++ +..||.+|.+|+.||+++|+.+|||||++|+..+++.+++.++.|....   ....|+|+||++|
T Consensus         2 ~~~FG~~L~~~~~~~~~~iP~~v~~~i~~L~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~va~~l   81 (203)
T cd04386           2 KPVFGTPLEEHLKRTGREIALPIEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVASAL   81 (203)
T ss_pred             CCcCCCCHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHHHHHH
Confidence            56999999999986 4579999999999999999999999999999999999999999996432   3457999999999


Q ss_pred             HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhh
Q 005588          239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM  318 (689)
Q Consensus       239 K~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivf  318 (689)
                      |.|||+||+||||.++|+.|+.+.+..+..+++..++.+| .+||+.|+.+|+||+.||++|++|++.|+|+++|||+||
T Consensus        82 K~fLreLp~pli~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~nLai~f  160 (203)
T cd04386          82 KSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRIL-NKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIVL  160 (203)
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHh
Confidence            9999999999999999999999998888889999999976 699999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 005588          319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE  375 (689)
Q Consensus       319 aP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~~  375 (689)
                      ||+|+|++..+.              . .+.+.....+.+.+|++||+||+.||+++
T Consensus       161 aP~ll~~~~~~~--------------~-~~~~~~~~~~~~~iv~~LI~~~~~iF~~~  202 (203)
T cd04386         161 APNLLWAKNEGS--------------L-AEMAAGTSVHVVAIVELIISHADWFFPGE  202 (203)
T ss_pred             ccccCCCCCCCh--------------h-hhhhhhhhHHHHHHHHHHHHhHHHhCCCC
Confidence            999999874211              0 11122334568899999999999999986

Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain

Probab=100.00  E-value=2.3e-40  Score=332.26  Aligned_cols=191  Identities=23%  Similarity=0.421  Sum_probs=168.9

Q ss_pred             cccccchHHHhhhC-----CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCC-ccCCCCCCcccchhh
Q 005588          164 LVVGRPILLALEDI-----DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDC  237 (689)
Q Consensus       164 ~vFG~pL~~ll~~~-----~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~Dvh~VAsl  237 (689)
                      .|||+||++++...     ..||.+|.+|+.||+++|+.+|||||++|+..+++++++.|++|. ..+....|+|+||++
T Consensus         1 ~iFG~~L~~~~~~~~~~~~~~iP~~i~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~d~h~va~l   80 (199)
T cd04390           1 GVFGQRLEDTVAYERKFGPRLVPILVEQCVDFIREHGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFDSDTDVHTVASL   80 (199)
T ss_pred             CcCCccHHHHHHHhcccCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHhCCCCCCccccCCHHHHHHH
Confidence            38999999998642     249999999999999999999999999999999999999999996 345567899999999


Q ss_pred             HHHHhhhCCCCCCChhhHHHHHHHHhc--CCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchh
Q 005588          238 VKHVLRELPSSPVPASCCTALLEAYKI--DRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA  315 (689)
Q Consensus       238 LK~fLReLPePLlp~~ly~~~i~~~~~--~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLA  315 (689)
                      ||.|||+||+||+|.++|+.|+.+.+.  .+...++..++.+| .+||+.|+.+|+||+.||++|+.|++.||||+.|||
T Consensus        81 LK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~l~~~l-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA  159 (199)
T cd04390          81 LKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLGELMKQV-SILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLA  159 (199)
T ss_pred             HHHHHHhCCCccCCHHHHHHHHHHHhccCccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHH
Confidence            999999999999999999999988764  34567788999866 699999999999999999999999999999999999


Q ss_pred             hhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 005588          316 ACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF  372 (689)
Q Consensus       316 ivfaP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF  372 (689)
                      +||||+|||+...      +           ..+.+..+..++.+|++||+||+.||
T Consensus       160 ivf~P~llr~~~~------~-----------~~~~~~~~~~~~~~~~~lI~~~~~~F  199 (199)
T cd04390         160 TVFGPNILRPKVE------D-----------PATIMEGTPQIQQLMTVMISKHEPLF  199 (199)
T ss_pred             HHhccccCCCCCC------C-----------HHHHHhccHHHHHHHHHHHHhhhhcC
Confidence            9999999998732      1           12334556678899999999999998

ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r

>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins

Probab=100.00  E-value=4.7e-40  Score=334.04  Aligned_cols=200  Identities=25%  Similarity=0.326  Sum_probs=176.2

Q ss_pred             ccccchHHHhhhC------CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCC---ccCCCCCCcccch
Q 005588          165 VVGRPILLALEDI------DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK---TEFSADEDAHVIG  235 (689)
Q Consensus       165 vFG~pL~~ll~~~------~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~---~~~~~~~Dvh~VA  235 (689)
                      |||+||+.++.+.      ..||.+|.+|+.||+++|+.+|||||++|+..+|+++++.++.+.   .......|+|+||
T Consensus         1 vFGv~L~~l~~~~~~~~~~~~iP~~l~~~i~~l~~~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~~~~~~~h~va   80 (216)
T cd04391           1 LFGVPLSTLLERDQKKVPGSKVPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDAA   80 (216)
T ss_pred             CCCCCHHHHHHHhcccCCCCCCCcHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHhcccccCccccccCCHHHHH
Confidence            7999999999863      369999999999999999999999999999999999999999863   2234567999999


Q ss_pred             hhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchh
Q 005588          236 DCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA  315 (689)
Q Consensus       236 slLK~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLA  315 (689)
                      ++||.|||+||+||||.++|+.|+.+....+..+++.+++.++ .+||+.|+.+|+||+.||++|+.|++.||||+.|||
T Consensus        81 ~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA  159 (216)
T cd04391          81 SLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQALNLLV-LLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVA  159 (216)
T ss_pred             HHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHccccCCCChHHHH
Confidence            9999999999999999999999999988888888999999866 699999999999999999999999999999999999


Q ss_pred             hhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005588          316 ACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES  376 (689)
Q Consensus       316 ivfaP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~~~  376 (689)
                      +||||+||++...+..           ........+..+..++.+|++||+|++.||..+.
T Consensus       160 ivfaP~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~iv~~lI~~~~~if~~p~  209 (216)
T cd04391         160 MIMAPNLFPPRGKHSK-----------DNESLQEEVNMAAGCANIMRLLIRYQDLLWTVPS  209 (216)
T ss_pred             HHhccccCCCCCCCCC-----------cchhHHHHHHHHHHHHHHHHHHHHhHHHHhcCCH
Confidence            9999999998743221           1123345566677789999999999999999865

The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB

Probab=100.00  E-value=5.6e-40  Score=326.09  Aligned_cols=185  Identities=24%  Similarity=0.345  Sum_probs=167.8

Q ss_pred             cccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCC-ccCCCCCCcccchhhHHHHhhh
Q 005588          166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRE  244 (689)
Q Consensus       166 FG~pL~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~Dvh~VAslLK~fLRe  244 (689)
                      ||+||+.++.+...||.+|.+|++||+++|+.+|||||++|+..+++++++.|+.|. .......|+|+||++||.|||+
T Consensus         1 FGv~L~~~~~~~~~vP~il~~~i~~l~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~~~~~~~d~h~va~lLK~flRe   80 (186)
T cd04407           1 FGVRVGSLTSNKTSVPIVLEKLLEHVEMHGLYTEGIYRKSGSANRMKELHQLLQADPENVKLENYPIHAITGLLKQWLRE   80 (186)
T ss_pred             CCCcHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCceeecCCCHHHHHHHHHHHhcCCcccCcccCCHHHHHHHHHHHHHh
Confidence            999999999888899999999999999999999999999999999999999999885 3334678999999999999999


Q ss_pred             CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccC
Q 005588          245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR  324 (689)
Q Consensus       245 LPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr  324 (689)
                      ||+||||+++|+.|+.+....+..+++.+++.+| .+||+.|+.+|++|+.||++|+.|++.|||++.|||+||||+|||
T Consensus        81 LPepLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~  159 (186)
T cd04407          81 LPEPLMTFAQYNDFLRAVELPEKQEQLQAIYRVL-EQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAPCLLR  159 (186)
T ss_pred             CCCccCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHhhhccccC
Confidence            9999999999999999998888888999999966 699999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 005588          325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE  367 (689)
Q Consensus       325 ~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen  367 (689)
                      ++...     +           .++.+....+.+.+|++||+.
T Consensus       160 ~~~~~-----d-----------~~~~~~~~~~~~~~v~~li~~  186 (186)
T cd04407         160 CPDSS-----D-----------PLTSMKDVAKTTTCVEMLIKE  186 (186)
T ss_pred             CCCCC-----C-----------HHHHHHhhhhhHHHHHHHhhC
Confidence            86321     1           134566777889999999973

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer

>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins

Probab=100.00  E-value=7.2e-40  Score=333.25  Aligned_cols=210  Identities=21%  Similarity=0.353  Sum_probs=175.3

Q ss_pred             CcccccchHHHhhhC-CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCC-ccCCCCCCcccchhhHHH
Q 005588          163 SLVVGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKH  240 (689)
Q Consensus       163 ~~vFG~pL~~ll~~~-~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~Dvh~VAslLK~  240 (689)
                      ++|||+||..++++. ..||.+|.+|+.||+.+|+.+|||||++|+..+++.|++.++.+. .......++|+||++||.
T Consensus         2 ~~vFGvpL~~~~~r~g~~IP~~i~~~i~~L~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~lLK~   81 (220)
T cd04375           2 KNVFGVPLLVNLQRTGQPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSMIESSTDNVNYDGQQAYDVADMLKQ   81 (220)
T ss_pred             CCEecCcHHHHHhhcCCCCChHHHHHHHHHHHhCCCccceeecCCcHHHHHHHHHHHhcCCCccCcccccHHHHHHHHHH
Confidence            469999999898864 569999999999999999999999999999999999999999863 444567899999999999


Q ss_pred             HhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcc
Q 005588          241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP  320 (689)
Q Consensus       241 fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP  320 (689)
                      |||+||+||||+++|+.|+.+.+..+.++++.+++.++ .+||+.|+.+|++|+.||++|+.|++.||||+.|||+||||
T Consensus        82 flReLPePLlt~~l~~~fi~~~~~~~~~~~~~~l~~~i-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP  160 (220)
T cd04375          82 YFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAI-LLLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLAP  160 (220)
T ss_pred             HHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhh
Confidence            99999999999999999999988888889999999977 59999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCCcccc---cc--CCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005588          321 LLLRPLLAGECELED---DF--DMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES  376 (689)
Q Consensus       321 ~Llr~~~~~~~~le~---~~--~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~~~  376 (689)
                      +||+........+..   .+  ...|...   ...+.....+..+|.+||+||+.||.-+.
T Consensus       161 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~e~~~~~~~v~~lI~~~~~lf~vp~  218 (220)
T cd04375         161 SLFHLNTSRRENSSPARRMQRKKSLGKPD---QKELSENKAAHQCLAYMIEECNTLFMVPK  218 (220)
T ss_pred             hhcCCCCCCcccccchhhhccccccCCCc---HHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            999986432111000   00  0111111   11234445577899999999999997543

DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin

Probab=100.00  E-value=5.9e-40  Score=324.95  Aligned_cols=176  Identities=21%  Similarity=0.355  Sum_probs=165.2

Q ss_pred             cccchHHHhhhC-----CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCccCCCCCCcccchhhHHH
Q 005588          166 VGRPILLALEDI-----DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKH  240 (689)
Q Consensus       166 FG~pL~~ll~~~-----~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~Dvh~VAslLK~  240 (689)
                      ||+||..++++.     ..||.+|.+|+.||+++|+.+|||||++|+..+++++++.|++|......++|+|+||++||.
T Consensus         1 FGv~L~~~~~~~~~~~g~~iP~~v~~~i~~l~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~~~~~~~d~h~va~lLK~   80 (182)
T cd04381           1 FGASLSLAVERSRCHDGIDLPLVFRECIDYVEKHGMKCEGIYKVSGIKSKVDELKAAYNRRESPNLEEYEPPTVASLLKQ   80 (182)
T ss_pred             CCCCHHHHHHhhccCCCCcCChHHHHHHHHHHHhCCCCCceeecCCcHHHHHHHHHHHcCCCCCCccccChHHHHHHHHH
Confidence            999999999874     259999999999999999999999999999999999999999997666667899999999999


Q ss_pred             HhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcc
Q 005588          241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP  320 (689)
Q Consensus       241 fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP  320 (689)
                      |||+||+||||.++|+.|+++....+..+++..++.++ .+||+.|+.+|+||+.||++|+.|++.||||++|||+||||
T Consensus        81 fLReLP~pLi~~~~~~~~~~~~~~~~~~~r~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP  159 (182)
T cd04381          81 YLRELPEPLLTKELMPRFEEACGRPTEAEREQELQRLL-KELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSP  159 (182)
T ss_pred             HHHhCCCccCCHHHHHHHHHHcCCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhCc
Confidence            99999999999999999999998888899999999966 69999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 005588          321 LLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD  374 (689)
Q Consensus       321 ~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~  374 (689)
                      +|+++                                +.+++.||+||+.||++
T Consensus       160 ~l~~~--------------------------------~~~~~~li~~~~~if~~  181 (182)
T cd04381         160 TVQIS--------------------------------NRLLYALLTHCQELFGN  181 (182)
T ss_pred             cccCc--------------------------------HHHHHHHHHHHHHHcCC
Confidence            99864                                26799999999999986

RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int

>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-38  Score=341.64  Aligned_cols=304  Identities=23%  Similarity=0.340  Sum_probs=239.4

Q ss_pred             CCCCceEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCC--CCCCceeeeeeCcEEcCCCcceeeccCCcceE
Q 005588           14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSAL--PQRGGEVNLTLGGIDLNNSGSVVVREDKKLLT   91 (689)
Q Consensus        14 ~~~~~V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~--p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~F   91 (689)
                      ..+...+++||||.+.|....++|.|+||+....+-.+-.-+-+..  .+.+...++.+..|.-....+    -+|+|||
T Consensus       260 k~p~p~t~eGYlY~QEK~~~g~sWvKyYC~Y~retk~~TMvp~~qk~g~k~g~~~~~~lKsC~RRktdS----IdKRFCF  335 (812)
T KOG1451|consen  260 KRPTPSTKEGYLYMQEKSKIGKSWVKYYCVYSRETKIFTMVPANQKTGTKMGQTATFKLKSCSRRKTDS----IDKRFCF  335 (812)
T ss_pred             cCCCCcccceeeeehhhhhccchhhhheeEeecccceEEEeecccCCCCcCCCcceEEehhhccCcccc----cccceee
Confidence            3556679999999999988889999999999886433333322222  223344445555554444332    4789999


Q ss_pred             EEEeCCCCCcEEEEEecChHHHHHHHHHHHHHHhhCCcchhccCccccccCCCCccccCccccccCCCCCCCcccccchH
Q 005588           92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPIL  171 (689)
Q Consensus        92 vI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~~aP~~~~~~g~~~~f~~~~~~~~~~~~~~~k~~~~~~~~vFG~pL~  171 (689)
                      .+....++ -+.++||-+++++..||.|+..+             .+++....+-...+.                ..|.
T Consensus       336 Dve~~erp-gviTmQALSE~drrlWmeAMDG~-------------ep~Y~s~~~~~~~~~----------------~qLd  385 (812)
T KOG1451|consen  336 DVEVEERP-GVITMQALSEKDRRLWMEAMDGA-------------EPSYTSGENCSTYKQ----------------TQLD  385 (812)
T ss_pred             eeeecccC-CeeehHhhhhhHHHHHHHHhcCC-------------CccccCccccchhhh----------------hhhh
Confidence            99875554 47999999999999999998644             222222211000000                0111


Q ss_pred             HHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhc----CCc--cCCCCCCcccchhhHHHHhhhC
Q 005588          172 LALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQ----GKT--EFSADEDAHVIGDCVKHVLREL  245 (689)
Q Consensus       172 ~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~----g~~--~~~~~~Dvh~VAslLK~fLReL  245 (689)
                      ++      -=.||.+||.+|+..|++++|+||..|...+|++|+..+-.    ++.  .....+|+-+|.+.||.|||.|
T Consensus       386 ~i------GF~fvrkCI~i~Et~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnL  459 (812)
T KOG1451|consen  386 DI------GFEFVRKCIDILETSGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNL  459 (812)
T ss_pred             hh------hHHHHHHHHHHHHhcCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhC
Confidence            11      13589999999999999999999999999999999886533    222  2335789999999999999999


Q ss_pred             CCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccCC
Q 005588          246 PSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRP  325 (689)
Q Consensus       246 PePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr~  325 (689)
                      |+||+++.+...|+.+++..+.+.|+.+|+.++ ++||..||.+|..|++||.+|+.|+..|.||..||++||||+|+|+
T Consensus       460 pEPLMTY~LHk~FI~AAKsdnq~yRv~aIHsLV-HkLPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlRp  538 (812)
T KOG1451|consen  460 PEPLMTYELHKVFINAAKSDNQTYRVDAIHSLV-HKLPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLRP  538 (812)
T ss_pred             CchhhHHHHHHHHHHHHhccchhhhHHHHHHHH-HhccHhhHHHHHHHHHHHHHHHhhhhcccccccccceeecccccCc
Confidence            999999999999999999999999999999977 6999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005588          326 LLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES  376 (689)
Q Consensus       326 ~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~~~  376 (689)
                      .                  ...+||++.++.++-||+.||+||+.||...+
T Consensus       539 Q------------------EETVAAiMdIKFQNIVVEILIEnyeKIF~t~P  571 (812)
T KOG1451|consen  539 Q------------------EETVAAIMDIKFQNIVVEILIENYEKIFKTKP  571 (812)
T ss_pred             h------------------HHHHHHHHcchhhhhhHHHHHhhhHHHhcCCC
Confidence            7                  23578888888888899999999999998765

>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA

Probab=100.00  E-value=1.7e-39  Score=324.88  Aligned_cols=190  Identities=22%  Similarity=0.304  Sum_probs=165.7

Q ss_pred             cccccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCccCC----CCCCcccchhhH
Q 005588          164 LVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFS----ADEDAHVIGDCV  238 (689)
Q Consensus       164 ~vFG~pL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~----~~~Dvh~VAslL  238 (689)
                      ++||+||..++.+ +..||.+|.+|++||+++|+ +|||||++|+..+++++++.|++|.....    ...|+|+||++|
T Consensus         1 ~vFG~~L~~~~~~~g~~iP~il~~~i~~l~~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lL   79 (195)
T cd04384           1 RVFGCDLTEHLLNSGQDVPQVLKSCTEFIEKHGI-VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSSLC   79 (195)
T ss_pred             CcCCccHHHHHHHcCCCCChHHHHHHHHHHHcCC-CcCeeeCCCCHHHHHHHHHHHcCCCCCCcccccccccHHHHHHHH
Confidence            4899999999876 45799999999999999999 69999999999999999999999863222    346999999999


Q ss_pred             HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhh
Q 005588          239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM  318 (689)
Q Consensus       239 K~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivf  318 (689)
                      |.|||+||+||||+++|+.|+++....+..+++..++.+| .+||+.|+.+|+||+.||++|+.|++.||||+.|||+||
T Consensus        80 K~flReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf  158 (195)
T cd04384          80 KLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVI-QQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVW  158 (195)
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHhhHhh
Confidence            9999999999999999999999999888899999999977 699999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 005588          319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE  367 (689)
Q Consensus       319 aP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen  367 (689)
                      ||+|||++.....      .+      +-.++.+.....+.||+|||+|
T Consensus       159 ~P~L~~~~~~~~~------~~------~~~~~~~~~~~q~~v~~~~~~~  195 (195)
T cd04384         159 APNLLRSKQIESA------CF------SGTAAFMEVRIQSVVVEFILNH  195 (195)
T ss_pred             hhhcCCCCccccc------cc------hHHHHHHHHhhhhhheehhhcC
Confidence            9999998732110      00      1123455566677899999986

CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins

Probab=100.00  E-value=2e-39  Score=328.75  Aligned_cols=192  Identities=18%  Similarity=0.323  Sum_probs=168.4

Q ss_pred             cccchHHHhhhCC------------CCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCcc--CCCCCCc
Q 005588          166 VGRPILLALEDID------------GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE--FSADEDA  231 (689)
Q Consensus       166 FG~pL~~ll~~~~------------~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~--~~~~~Dv  231 (689)
                      ||+||..++++.+            .||.+|.+|+.||+++|+.+|||||++|+..+++++++.|++|...  .....++
T Consensus         1 FGv~L~~l~~~~~~~~~~~~~~~~~~IP~~l~~~i~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d~~~~~~   80 (213)
T cd04397           1 FGVPLEILVEKFGADSTLGVGPGKLRIPALIDDIISAMRQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKENP   80 (213)
T ss_pred             CCCCHHHHHHHhCcccccccCCCCCCCCHHHHHHHHHHHHcCCCcCCeeeecchHHHHHHHHHHHhcCCCcccccccCcH
Confidence            9999999998843            3999999999999999999999999999999999999999998532  3456799


Q ss_pred             ccchhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccC-----C
Q 005588          232 HVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAH-----E  306 (689)
Q Consensus       232 h~VAslLK~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~-----~  306 (689)
                      |+||++||.|||+||+||||.++|+.|+.+.+..+.++++..++.++ .+||+.|+.+|++|+.||++|+.++.     .
T Consensus        81 ~~va~lLK~flReLPepLi~~~~y~~~i~~~~~~~~~~~~~~l~~l~-~~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~  159 (213)
T cd04397          81 VQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDEEERKRVLHLVY-CLLPKYHRDTMEVLFSFLKWVSSFSHIDEETG  159 (213)
T ss_pred             HHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhhhhcccCC
Confidence            99999999999999999999999999999999888888999998865 69999999999999999999998765     5


Q ss_pred             CCCCccchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005588          307 NRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES  376 (689)
Q Consensus       307 NkMta~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~~~  376 (689)
                      ||||+.|||+||||+|||++....                  ..+......+.+|++||+||+.||+.+.
T Consensus       160 NkM~~~NLAivf~P~Ll~~~~~~~------------------~~~~~~~~~~~vv~~LI~n~~~if~vp~  211 (213)
T cd04397         160 SKMDIHNLATVITPNILYSKTDNP------------------NTGDEYFLAIEAVNYLIENNEEFCEVPD  211 (213)
T ss_pred             CcCChHHhHHhhcccccCCCCCCc------------------chHHHHHHHHHHHHHHHHhHHHHhcCCC
Confidence            999999999999999999874221                  0112233467899999999999998754

Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs

Probab=100.00  E-value=2.7e-39  Score=321.75  Aligned_cols=184  Identities=20%  Similarity=0.379  Sum_probs=165.6

Q ss_pred             cccccchHHHhhhC-CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCcc---CCCCCCcccchhhHH
Q 005588          164 LVVGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE---FSADEDAHVIGDCVK  239 (689)
Q Consensus       164 ~vFG~pL~~ll~~~-~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~---~~~~~Dvh~VAslLK  239 (689)
                      ++||+||+.++++. ..||.+|.+|+.||+++|+.+|||||++|+..+++++++.|++|...   .....|+|+||++||
T Consensus         1 k~FG~~L~~~~~~~~~~IP~~v~~~i~~l~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~lLK   80 (188)
T cd04383           1 KLFNGSLEEYIQDSGQAIPLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAGVLK   80 (188)
T ss_pred             CcCCccHHHHHHHCCCCCChHHHHHHHHHHHcCCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHHHHH
Confidence            48999999999874 57999999999999999999999999999999999999999998643   234689999999999


Q ss_pred             HHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhc
Q 005588          240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMA  319 (689)
Q Consensus       240 ~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfa  319 (689)
                      .|||+||+||||.++|+.|+++.+..+..+++..++.+| .+||+.|+.+|+||+.||++|++|++.||||++|||+|||
T Consensus        81 ~fLReLPepLip~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~  159 (188)
T cd04383          81 LYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIREIL-STLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAICFG  159 (188)
T ss_pred             HHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCcccceeeee
Confidence            999999999999999999999999988899999999977 6999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 005588          320 PLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE  367 (689)
Q Consensus       320 P~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen  367 (689)
                      |+|+|.+...                   +.+....+++++++.||.|
T Consensus       160 P~L~~~p~~~-------------------~~~~~~~~~~~~~~~li~~  188 (188)
T cd04383         160 PTLMPVPEGQ-------------------DQVSCQAHVNELIKTIIIH  188 (188)
T ss_pred             ccccCCCCCc-------------------cHHHHHHHHHHHHHHHhcC
Confidence            9999976321                   1234456788899999875

srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group

>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains

Probab=100.00  E-value=3.5e-39  Score=320.71  Aligned_cols=183  Identities=27%  Similarity=0.401  Sum_probs=163.4

Q ss_pred             cccchHHHhhhC-CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCcc-C--CCCCCcccchhhHHHH
Q 005588          166 VGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE-F--SADEDAHVIGDCVKHV  241 (689)
Q Consensus       166 FG~pL~~ll~~~-~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~-~--~~~~Dvh~VAslLK~f  241 (689)
                      ||+||..++++. ..||.+|.+|+.||+++|+.+|||||++|+...+++++..++.|... +  ....|+|+||++||.|
T Consensus         1 FGv~L~~~~~~~~~~iP~~l~~~i~~l~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f   80 (187)
T cd04403           1 FGCHLEALCQRENSTVPKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGALKLF   80 (187)
T ss_pred             CCCChHHHHHHcCCCCChHHHHHHHHHHHhCCCcCceeeecCcHHHHHHHHHHhcCCCCCCccccccccHHHHHHHHHHH
Confidence            999999999874 46999999999999999999999999999999999999999998632 2  3457999999999999


Q ss_pred             hhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhccc
Q 005588          242 LRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPL  321 (689)
Q Consensus       242 LReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~  321 (689)
                      ||+||+||||+++|+.|+++.+..+..+++..++.++ .+||+.|+.+|+||+.||++|++|++.||||+.|||+||||+
T Consensus        81 LReLPepLi~~~~~~~~~~~~~~~~~~~~i~~l~~ll-~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLAivf~P~  159 (187)
T cd04403          81 FRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLI-KSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGPT  159 (187)
T ss_pred             HhcCCCCcCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhccccccCChHHhhhhcccc
Confidence            9999999999999999999999988899999999976 699999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 005588          322 LLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE  367 (689)
Q Consensus       322 Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen  367 (689)
                      |||++...                  ...+....+++.+|++||+|
T Consensus       160 ll~~~~~~------------------~~~~~~~~~~~~~ve~l~~~  187 (187)
T cd04403         160 LLRPEQET------------------GNIAVHMVYQNQIVELILLE  187 (187)
T ss_pred             ccCCCCcc------------------hHHHHHhHHHHHHHHHHhhC
Confidence            99987321                  01122344678999999985

Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3)

Probab=100.00  E-value=5.1e-39  Score=321.50  Aligned_cols=190  Identities=26%  Similarity=0.445  Sum_probs=169.1

Q ss_pred             CCcccccchHHHhhhC---CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCc-cCCCCCCcccchhh
Q 005588          162 KSLVVGRPILLALEDI---DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDC  237 (689)
Q Consensus       162 ~~~vFG~pL~~ll~~~---~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~Dvh~VAsl  237 (689)
                      ++.+||+||+.++++.   ..||.+|.+|+.||+++|+++|||||++|+..+++++++.+++|.. .+....|+|+||++
T Consensus         2 ~~~~FGv~L~~~~~~~~~~~~iP~il~~~i~~l~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~~   81 (195)
T cd04404           2 PTQQFGVSLQFLKEKNPEQEPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEVQQKYNMGEPVDFDQYEDVHLPAVI   81 (195)
T ss_pred             CCCcCCCcHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCcccccCHHHHHHH
Confidence            5789999999999864   5699999999999999999999999999999999999999999963 34333499999999


Q ss_pred             HHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhh
Q 005588          238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC  317 (689)
Q Consensus       238 LK~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAiv  317 (689)
                      ||.|||+||+||+|.+.|+.|+.+.+.. ...++..++.++ .+||+.|+.+|.+|+.||++|+.|++.|+|++.|||+|
T Consensus        82 LK~~lr~Lp~pLi~~~~~~~l~~~~~~~-~~~~~~~~~~~i-~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~v  159 (195)
T cd04404          82 LKTFLRELPEPLLTFDLYDDIVGFLNVD-KEERVERVKQLL-QTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVV  159 (195)
T ss_pred             HHHHHHhCCCccCCHHHHHHHHHHHcCC-HHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhhee
Confidence            9999999999999999999999987654 678899999977 58999999999999999999999999999999999999


Q ss_pred             hcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 005588          318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF  372 (689)
Q Consensus       318 faP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF  372 (689)
                      |||+|+|++... .                  .+...+.++.+|++||+||+.||
T Consensus       160 faP~l~~~~~~~-~------------------~l~~~~~~~~~~~~LI~~~~~iF  195 (195)
T cd04404         160 FGPNLLWAKDAS-M------------------SLSAINPINTFTKFLLDHQDEIF  195 (195)
T ss_pred             eeccccCCCCcc-c------------------CHHHHHHHHHHHHHHHHhHHhhC
Confidence            999999987321 0                  13345667889999999999998

It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins

Probab=100.00  E-value=6.1e-39  Score=321.27  Aligned_cols=190  Identities=21%  Similarity=0.361  Sum_probs=169.1

Q ss_pred             ccccchHHHhhhC--CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCccC----CCCCCcccchhhH
Q 005588          165 VVGRPILLALEDI--DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF----SADEDAHVIGDCV  238 (689)
Q Consensus       165 vFG~pL~~ll~~~--~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~----~~~~Dvh~VAslL  238 (689)
                      .||+||+..+...  ..||.+|.+|+.+|+++|+.+|||||++|+..+++++++.+++|....    ....|+|+||++|
T Consensus         1 ~FGvpl~~~~~~~~~~~vP~iv~~~~~~l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va~ll   80 (196)
T cd04395           1 TFGVPLDDCPPSSENPYVPLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSLL   80 (196)
T ss_pred             CCCccHHHHhcccCCCCCChHHHHHHHHHHHcCCCCccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHHHHH
Confidence            5999999877653  569999999999999999999999999999999999999999996432    2346999999999


Q ss_pred             HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhh
Q 005588          239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM  318 (689)
Q Consensus       239 K~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivf  318 (689)
                      |.|||+||+||||.+.|+.|+.+.+..+..+++..++.++ .+||+.|+.+|+||+.||++|+.|++.|+|++.|||+||
T Consensus        81 K~flr~Lp~pli~~~~~~~~i~~~~~~~~~~~i~~l~~~i-~~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~nLAi~f  159 (196)
T cd04395          81 KSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRRLI-HSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVF  159 (196)
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhhccccccccchHHhh
Confidence            9999999999999999999999988888899999999976 699999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 005588          319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF  372 (689)
Q Consensus       319 aP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF  372 (689)
                      ||+|+|++..+                 ...........+.+|+.||+||+.||
T Consensus       160 aP~l~r~~~~~-----------------~~~~~~~~~~~~~ii~~LI~~~d~~f  196 (196)
T cd04395         160 GPTLVRTSDDN-----------------METMVTHMPDQCKIVETLIQHYDWFF  196 (196)
T ss_pred             ccccCCCCCCC-----------------HHHHHHhHHHHHHHHHHHHHhCcccC
Confidence            99999987321                 01223345567899999999999998

ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA

Probab=100.00  E-value=5.2e-39  Score=319.12  Aligned_cols=183  Identities=21%  Similarity=0.329  Sum_probs=164.9

Q ss_pred             cccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCC-ccCCCCCCcccchhhHHHHhhh
Q 005588          166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRE  244 (689)
Q Consensus       166 FG~pL~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~Dvh~VAslLK~fLRe  244 (689)
                      ||+||+.++..++.||.+|.+|+.||+.+|+.+|||||++|+..+|+++++.|+.|. ......+|+|+||++||.|||+
T Consensus         1 FGv~L~~l~~~~~~iP~ii~~~i~~l~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~~~~~~~d~h~va~lLK~fLRe   80 (186)
T cd04406           1 FGVELSRLTSEDRSVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDANSVNLDDYNIHVIASVFKQWLRD   80 (186)
T ss_pred             CCCchHHHHHCCCCCCcHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHccCCCCCCcccCCHHHHHHHHHHHHHh
Confidence            999999999877889999999999999999999999999999999999999999875 3445678999999999999999


Q ss_pred             CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccC
Q 005588          245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR  324 (689)
Q Consensus       245 LPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr  324 (689)
                      ||+||||.++|+.|+.+....+..+++..++.+| ..||+.|+.+|++|+.||++|+.|++.|+||++|||+||||+|||
T Consensus        81 LPePLi~~~~y~~~~~~~~~~~~~~~i~~~~~li-~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf~P~ll~  159 (186)
T cd04406          81 LPNPLMTFELYEEFLRAMGLQERRETVRGVYSVI-DQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPCILR  159 (186)
T ss_pred             CCCccCCHHHHHHHHHHHhcccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhCCCccCCChHHHHHHhcccccC
Confidence            9999999999999999998888888999999866 699999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 005588          325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLL  365 (689)
Q Consensus       325 ~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LI  365 (689)
                      ++...     +           .++.++...+...+|++||
T Consensus       160 ~p~~~-----d-----------~~~~~~~~~~~~~~~~~~~  184 (186)
T cd04406         160 CPDTT-----D-----------PLQSVQDISKTTTCVELIV  184 (186)
T ss_pred             CCCCC-----C-----------HHHHHHHHhhccchhhhhc
Confidence            87321     1           1334556667788899887

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife

>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein)

Probab=100.00  E-value=7.7e-39  Score=321.43  Aligned_cols=186  Identities=20%  Similarity=0.342  Sum_probs=163.8

Q ss_pred             cccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCc-cCCCCCCcccchhhHHHHhh
Q 005588          166 VGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLR  243 (689)
Q Consensus       166 FG~pL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~Dvh~VAslLK~fLR  243 (689)
                      ||+||..++++ ++.||.+|.+|++||+++|+.+|||||++|+..+++++++.|++|.. ......|||+||++||.|||
T Consensus         1 FGv~l~~l~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLR   80 (200)
T cd04408           1 FGVDFSQLPRDFPEEVPFVVVRCTAEIENRALGVQGIYRISGSKARVEKLCQAFENGRDLVDLSGHSPHDITSVLKHFLK   80 (200)
T ss_pred             CCCCHHHHHHhCCCCCChHHHHHHHHHHHcCCCCcceeeCCCcHHHHHHHHHHHhcCCCccCcccCCHHHHHHHHHHHHH
Confidence            99999999987 56799999999999999999999999999999999999999999863 33457899999999999999


Q ss_pred             hCCCCCCChhhHHHHHHHHhcC------------CHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCc
Q 005588          244 ELPSSPVPASCCTALLEAYKID------------RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTP  311 (689)
Q Consensus       244 eLPePLlp~~ly~~~i~~~~~~------------~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta  311 (689)
                      +||+||||+++|+.|+++.+..            ...+++.+++.+| ..||+.|+.+|+||+.||++|+.|++.|+|++
T Consensus        81 eLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~li-~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~  159 (200)
T cd04408          81 ELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKELL-GRLPVSNYNTLRHLMAHLYRVAERFEDNKMSP  159 (200)
T ss_pred             hCCCccCCHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhhhccCCCH
Confidence            9999999999999999876531            2457899999977 69999999999999999999999999999999


Q ss_pred             cchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 005588          312 SAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE  367 (689)
Q Consensus       312 ~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen  367 (689)
                      .|||+||||+|||++....               ..++++....+.+.+|++||.|
T Consensus       160 ~NLAivf~P~Ll~~~~~~~---------------~~~~~~~~~~~q~~~ve~li~~  200 (200)
T cd04408         160 NNLGIVFGPTLLRPLVGGD---------------VSMICLLDTGYQAQLVEFLISN  200 (200)
T ss_pred             hHhhhhhccccCCCCCCCc---------------hHHHHHhccchHHHHHHHHhhC
Confidence            9999999999999984321               1234455667788999999986

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins

Probab=100.00  E-value=2e-38  Score=318.87  Aligned_cols=195  Identities=24%  Similarity=0.328  Sum_probs=168.1

Q ss_pred             ccccchHHHhhh----CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCccCCCCCCcccchhhHHH
Q 005588          165 VVGRPILLALED----IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKH  240 (689)
Q Consensus       165 vFG~pL~~ll~~----~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~Dvh~VAslLK~  240 (689)
                      |||+||..++..    .+.||.+|.+|+.||++ |+.+|||||++|+..+++++++.|++|.... ...++|+||++||.
T Consensus         1 vFGv~L~~l~~~~~~~~~~IP~il~~~~~~l~~-~l~~EGIFR~sG~~~~i~~l~~~~d~~~~~~-~~~~~~~vaslLK~   78 (202)
T cd04394           1 VFGVPLHSLPHSTVPEYGNVPKFLVDACTFLLD-HLSTEGLFRKSGSVVRQKELKAKLEGGEACL-SSALPCDVAGLLKQ   78 (202)
T ss_pred             CCCccHHHHHHhhCCCCCCCChHHHHHHHHHHH-CCCCCCeeeCCCCHHHHHHHHHHHcCCCCCc-cccCHHHHHHHHHH
Confidence            799999988754    46799999999999986 6999999999999999999999999986443 35789999999999


Q ss_pred             HhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcc
Q 005588          241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP  320 (689)
Q Consensus       241 fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP  320 (689)
                      |||+||+||||.++|+.|+.+....+.++++.+++.++ .+||+.|+.+|+||+.||++|++|++.||||+.|||+||||
T Consensus        79 flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivfaP  157 (202)
T cd04394          79 FFRELPEPLLPYDLHEALLKAQELPTDEERKSATLLLT-CLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAP  157 (202)
T ss_pred             HHhcCCCcCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHhhcc
Confidence            99999999999999999999988888888888888755 69999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005588          321 LLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES  376 (689)
Q Consensus       321 ~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~~~  376 (689)
                      +|||+.....       .|.    ..   +......++.+|++||+||+.||--++
T Consensus       158 ~L~~~~~~~~-------~~s----~~---~~~~~~~~~~vv~~lI~~~~~i~~vp~  199 (202)
T cd04394         158 NLFQSEEGGE-------KMS----SS---TEKRLRLQAAVVQTLIDNASNIGIVPD  199 (202)
T ss_pred             eeecCCCccc-------ccc----hh---HHHhHHHHHHHHHHHHHHHHHHccCCc
Confidence            9999863211       111    00   112234567999999999999997654

The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins

Probab=100.00  E-value=2.2e-38  Score=323.53  Aligned_cols=188  Identities=21%  Similarity=0.279  Sum_probs=161.7

Q ss_pred             ccccchHHHhhhC----------------CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCC----cc
Q 005588          165 VVGRPILLALEDI----------------DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK----TE  224 (689)
Q Consensus       165 vFG~pL~~ll~~~----------------~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~----~~  224 (689)
                      ||||||++.++..                +.||.+|.+|+.||+++|+.+|||||++|+..+++++++.|+.+.    ..
T Consensus         1 ~fg~~l~~~~~~~~~~~~~~~~~~~~~~~~~IP~iv~~ci~~l~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~~   80 (225)
T cd04396           1 VFGVSLEESLKYASVAISIVDEDGEQYVYGYIPVVVAKCGVYLKENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSF   80 (225)
T ss_pred             CCCCcHHHHHHhcchheeeecCCCccccCCCCChHHHHHHHHHHHCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCcC
Confidence            7999999888642                358999999999999999999999999999999999999999863    22


Q ss_pred             CCCCCCcccchhhHHHHhhhCCCCCCChhhHHHHHHHHhc-----------------CCHHHHHHHHHHHHhccCChhHH
Q 005588          225 FSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKI-----------------DRKEARISAMRSAILETFPEPNR  287 (689)
Q Consensus       225 ~~~~~Dvh~VAslLK~fLReLPePLlp~~ly~~~i~~~~~-----------------~~~e~ri~~l~~lIl~~LP~~N~  287 (689)
                      ....+++|+||++||.|||+||+||||.++|+.|+.+...                 .+..+++..++.++ .+||+.|+
T Consensus        81 ~~~~~~vh~va~lLK~fLReLPePLip~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~li-~~LP~~n~  159 (225)
T cd04396          81 DWDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLI-TRLPNLNR  159 (225)
T ss_pred             CccCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHHHH-HHCCHHHH
Confidence            3366899999999999999999999999999999987643                 35678899999976 69999999


Q ss_pred             HHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 005588          288 RLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE  367 (689)
Q Consensus       288 ~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen  367 (689)
                      .+|+||+.||++|++|++.||||++|||+||||+||+++...         |.          .......+.+|++||+|
T Consensus       160 ~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~~~---------~~----------~~~~~~~~~~ve~lI~~  220 (225)
T cd04396         160 QLLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGILSHPDHE---------MD----------PKEYKLSRLVVEFLIEH  220 (225)
T ss_pred             HHHHHHHHHHHHHHHhhccccCChhhhheeeccccCCCCccc---------cC----------HHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999987311         10          11223467899999999


Q ss_pred             ccccC
Q 005588          368 YENIF  372 (689)
Q Consensus       368 ~~~IF  372 (689)
                      ++++.
T Consensus       221 ~~~~~  225 (225)
T cd04396         221 QDKFL  225 (225)
T ss_pred             HHhhC
Confidence            98863

Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins

Probab=100.00  E-value=3.1e-38  Score=318.21  Aligned_cols=187  Identities=24%  Similarity=0.429  Sum_probs=164.0

Q ss_pred             CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCC-ccCCCCCCcccchhhHHHHhhhCCCCCCChhhH
Q 005588          177 IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRELPSSPVPASCC  255 (689)
Q Consensus       177 ~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~Dvh~VAslLK~fLReLPePLlp~~ly  255 (689)
                      ...||.+|.+|+.||+++|+.+|||||++|+..+++++++.|++|. ..+....|+|+||++||.|||+||+||+|+++|
T Consensus         6 ~~~iP~iv~~ci~~l~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLReLPePLi~~~~y   85 (206)
T cd04376           6 ARQVPRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLDENHSVHDVAALLKEFFRDMPDPLLPRELY   85 (206)
T ss_pred             CCCCCHHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHhCCCccCCHHHH
Confidence            4579999999999999999999999999999999999999999996 345567899999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccC-----------CCCCCccchhhhhcccccC
Q 005588          256 TALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAH-----------ENRMTPSAVAACMAPLLLR  324 (689)
Q Consensus       256 ~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~-----------~NkMta~NLAivfaP~Llr  324 (689)
                      +.|+.+.... .++++.+++.+| .+||+.|+.+|+||+.||++|+.|++           .||||+.|||+||||+|||
T Consensus        86 ~~~i~~~~~~-~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NLAivf~P~Ll~  163 (206)
T cd04376          86 TAFIGTALLE-PDEQLEALQLLI-YLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLH  163 (206)
T ss_pred             HHHHHHHcCC-HHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHHHHHhhccccC
Confidence            9999998765 678899999966 69999999999999999999999986           7999999999999999999


Q ss_pred             CCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005588          325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES  376 (689)
Q Consensus       325 ~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~~~  376 (689)
                      ++..+...+++           ..+.+.....++.||++||+||+.||..++
T Consensus       164 ~~~~~~~~~~~-----------~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~  204 (206)
T cd04376         164 KQKSGEREFVQ-----------ASLRIEESTAIINVVQTMIDNYEELFMVSP  204 (206)
T ss_pred             CCCCcccccch-----------hhhhHHHHHHHHHHHHHHHHhHHHHcCCCC
Confidence            98544332221           123345556678999999999999999865

ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins

Probab=100.00  E-value=2.8e-38  Score=315.35  Aligned_cols=185  Identities=24%  Similarity=0.406  Sum_probs=166.2

Q ss_pred             cccchHHHhhhC-CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCc--cC----CCCCCcccchhhH
Q 005588          166 VGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT--EF----SADEDAHVIGDCV  238 (689)
Q Consensus       166 FG~pL~~ll~~~-~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~--~~----~~~~Dvh~VAslL  238 (689)
                      ||+||..++.+. ..||.+|.+|+.||+++|+.+|||||++|+..+++++++.+++|..  .+    ....|||+||++|
T Consensus         1 FG~~L~~~~~~~~~~iP~~v~~~i~~l~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~va~~L   80 (192)
T cd04398           1 FGVPLEDLILREGDNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVASLL   80 (192)
T ss_pred             CCCChHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHHHHHH
Confidence            999999999864 5699999999999999999999999999999999999999999852  22    1246999999999


Q ss_pred             HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhh
Q 005588          239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM  318 (689)
Q Consensus       239 K~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivf  318 (689)
                      |.|||+||+||||.++|+.|+.+.+..+..+++..++.++ ++||+.|+.+|+||+.||++|+.+++.|+||+.|||+||
T Consensus        81 K~fLreLp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf  159 (192)
T cd04398          81 KLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHGLI-NDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAIIW  159 (192)
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHhHHHHHH
Confidence            9999999999999999999999999888889999999976 699999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 005588          319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF  372 (689)
Q Consensus       319 aP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF  372 (689)
                      ||+|||++..+                     +........++++||+||+.||
T Consensus       160 ~P~l~~~~~~~---------------------~~~~~~~~~~~~~LI~~~~~iF  192 (192)
T cd04398         160 GPTLMNAAPDN---------------------AADMSFQSRVIETLLDNAYQIF  192 (192)
T ss_pred             hhhhCCCCccc---------------------hhhHHHHHHHHHHHHHHHHHhC
Confidence            99999987310                     1123446789999999999998

Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins

Probab=100.00  E-value=4.4e-38  Score=312.63  Aligned_cols=185  Identities=25%  Similarity=0.375  Sum_probs=168.3

Q ss_pred             cccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCC-ccCCCCCCcccchhhHHHHhhh
Q 005588          166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRE  244 (689)
Q Consensus       166 FG~pL~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~Dvh~VAslLK~fLRe  244 (689)
                      ||+||..++.++..||.+|.+|++||+.+|+.+|||||++|+..+++++++.+++|. ......+|+|+||++||+|||+
T Consensus         1 FG~~L~~~~~~~~~vP~~l~~~~~~l~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~~va~~LK~flr~   80 (186)
T cd04377           1 FGVSLSSLTSEDRSVPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTDPDSVNLEDYPIHVITSVLKQWLRE   80 (186)
T ss_pred             CCCCHHHHHhCCCCCChHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhCCCcccCcccCCHHHHHHHHHHHHHc
Confidence            999999999888889999999999999999999999999999999999999999984 3345678999999999999999


Q ss_pred             CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccC
Q 005588          245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR  324 (689)
Q Consensus       245 LPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr  324 (689)
                      ||+||||+++|+.|+.+....+..+++..++.+| .+||+.|+.+|+||+.||++|+.|++.|+|++.|||+||||+|+|
T Consensus        81 LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i-~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~ll~  159 (186)
T cd04377          81 LPEPLMTFELYENFLRAMELEEKQERVRALYSVL-EQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAPCILR  159 (186)
T ss_pred             CCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhHhcC
Confidence            9999999999999999998888889999999866 699999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 005588          325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE  367 (689)
Q Consensus       325 ~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen  367 (689)
                      ++...+                .+.+++...+...+|++||+.
T Consensus       160 ~~~~~~----------------~~~~~~d~~~~~~~~e~li~~  186 (186)
T cd04377         160 CPDTAD----------------PLQSLQDVSKTTTCVETLIKE  186 (186)
T ss_pred             CCCCCC----------------HHHHHHHHHHHHHHHHHHhhC
Confidence            873211                134567778889999999974

Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer

>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1)

Probab=100.00  E-value=3.6e-38  Score=317.34  Aligned_cols=187  Identities=20%  Similarity=0.302  Sum_probs=163.0

Q ss_pred             cccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCC-ccCCCCCCcccchhhHHHHhh
Q 005588          166 VGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLR  243 (689)
Q Consensus       166 FG~pL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~Dvh~VAslLK~fLR  243 (689)
                      ||+||..++.+ ++.||.+|.+|+.||+++|+.+|||||++|+..+++++++.|+.|. .......|+|+||++||.|||
T Consensus         1 FG~~L~~~~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~~~~~~~~~h~va~~LK~fLR   80 (203)
T cd04378           1 FGVDFSQVPRDFPDEVPFIIKKCTSEIENRALGVQGIYRVSGSKARVEKLCQAFENGKDLVELSELSPHDISSVLKLFLR   80 (203)
T ss_pred             CCCChHHHHHHCCCCCChHHHHHHHHHHhcCCCCccceeCCCcHHHHHHHHHHHhcCCCccccccCCHHHHHHHHHHHHH
Confidence            99999999987 4679999999999999999999999999999999999999999986 334557899999999999999


Q ss_pred             hCCCCCCChhhHHHHHHHHhcC--------------CHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCC
Q 005588          244 ELPSSPVPASCCTALLEAYKID--------------RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRM  309 (689)
Q Consensus       244 eLPePLlp~~ly~~~i~~~~~~--------------~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkM  309 (689)
                      +||+||||+++|+.|+.+.+..              +...++..++.+| .+||+.|+.+|+||+.||++|++|++.|||
T Consensus        81 eLpePlip~~~y~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM  159 (203)
T cd04378          81 QLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDLL-RQLPASNYNTLQHLIAHLYRVAEQFEENKM  159 (203)
T ss_pred             hCCCccCCHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            9999999999999999987531              2245788999866 699999999999999999999999999999


Q ss_pred             CccchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 005588          310 TPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE  367 (689)
Q Consensus       310 ta~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen  367 (689)
                      ++.|||+||||+|||++....              ...++++....+...+|++||.|
T Consensus       160 ~~~NLaivf~P~Ll~~~~~~~--------------~~~~~~l~~~~~q~~~ve~li~~  203 (203)
T cd04378         160 SPNNLGIVFGPTLIRPRPGDA--------------DVSLSSLVDYGYQARLVEFLITN  203 (203)
T ss_pred             CHHHhhhhhccccCCCCCCCc--------------chhHHHHHhhhhhHHHHHHHhhC
Confidence            999999999999999984211              01133455667788999999986

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge

>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins

Probab=100.00  E-value=3.4e-38  Score=314.38  Aligned_cols=177  Identities=21%  Similarity=0.369  Sum_probs=161.7

Q ss_pred             ccccchHHHhhh------CCCCcHHHHHHHHHHHhcC-CCcCCeeecCCCHHHHHHHHHHhhcCC-ccC---CCCCCccc
Q 005588          165 VVGRPILLALED------IDGGPSFLEKALRFLEKFG-TKVEGILRQAADVEEVDRRVQEYEQGK-TEF---SADEDAHV  233 (689)
Q Consensus       165 vFG~pL~~ll~~------~~~VP~iL~~~i~~Le~~G-l~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~---~~~~Dvh~  233 (689)
                      |||+||..+++.      +..||.+|.+|+.||+++| +.+|||||++|+...++++++.|+.|. ..+   ....|+|+
T Consensus         1 vFGv~L~~~~~~~~~~~~~~~iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~d~h~   80 (190)
T cd04400           1 IFGSPLEEAVELSSHKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVHT   80 (190)
T ss_pred             CCCCcHHHHHHHhccccCCCCCChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCCCCCccccccccCHHH
Confidence            799999999975      3469999999999999986 799999999999999999999999984 222   24579999


Q ss_pred             chhhHHHHhhhCCCCCCChhhHHHHHHHHhcC-CHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCcc
Q 005588          234 IGDCVKHVLRELPSSPVPASCCTALLEAYKID-RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPS  312 (689)
Q Consensus       234 VAslLK~fLReLPePLlp~~ly~~~i~~~~~~-~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~  312 (689)
                      ||++||.|||+||+||+|.++|+.|+.+.+.. +..+++..++.+| .+||+.|+.+|++|+.||++|+.|++.|+||++
T Consensus        81 va~lLK~flreLP~PLi~~~~~~~~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~  159 (190)
T cd04400          81 VAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRALELKDLV-SQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLR  159 (190)
T ss_pred             HHHHHHHHHHhCCcccCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhccccCCChH
Confidence            99999999999999999999999999988776 7788999999976 699999999999999999999999999999999


Q ss_pred             chhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 005588          313 AVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD  374 (689)
Q Consensus       313 NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~  374 (689)
                      |||+||||+|++|.                                .++..||++|+.||++
T Consensus       160 NLa~vf~P~L~~~~--------------------------------~~~~~~~~~~~~~f~~  189 (190)
T cd04400         160 NVCIVFSPTLNIPA--------------------------------GIFVLFLTDFDCIFGG  189 (190)
T ss_pred             HhhhhcCCCCCCCH--------------------------------HHHHHHHHHHHHHcCC
Confidence            99999999999874                                4789999999999986

Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins

Probab=100.00  E-value=5.8e-38  Score=311.44  Aligned_cols=161  Identities=27%  Similarity=0.509  Sum_probs=151.7

Q ss_pred             cccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCc-cC-CCCCCcccchhhHHHHhh
Q 005588          166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EF-SADEDAHVIGDCVKHVLR  243 (689)
Q Consensus       166 FG~pL~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~-~~~~Dvh~VAslLK~fLR  243 (689)
                      ||+||..++..+..||.+|.+|+.||+++|+.+|||||++|+..+++++++.|++|.. .+ ..+.|+|+||++||+|||
T Consensus         1 FG~pL~~~~~~~~~IP~~l~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~fLr   80 (185)
T cd04373           1 FGVPLANVVTSEKPIPIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLVSKDFTVNAVAGALKSFFS   80 (185)
T ss_pred             CCCchHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHHHHHHh
Confidence            9999999999888999999999999999999999999999999999999999999853 33 245799999999999999


Q ss_pred             hCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhccccc
Q 005588          244 ELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLL  323 (689)
Q Consensus       244 eLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Ll  323 (689)
                      +||+||||+++|+.|+++....+..+++..++.+| ++||+.|+.+|+||+.||++|+++++.|+||+.|||+||||+||
T Consensus        81 eLPePlip~~~~~~~~~~~~~~~~~~~i~~l~~li-~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~NLAi~f~P~L~  159 (185)
T cd04373          81 ELPDPLIPYSMHLELVEAAKINDREQRLHALKELL-KKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWPTLM  159 (185)
T ss_pred             cCCchhccHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHHHHHHccccC
Confidence            99999999999999999999888889999999976 69999999999999999999999999999999999999999999


Q ss_pred             CCCC
Q 005588          324 RPLL  327 (689)
Q Consensus       324 r~~~  327 (689)
                      |+..
T Consensus       160 ~~~~  163 (185)
T cd04373         160 RPDF  163 (185)
T ss_pred             CCCC
Confidence            9873

p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1)

Probab=100.00  E-value=6.2e-38  Score=317.34  Aligned_cols=187  Identities=21%  Similarity=0.314  Sum_probs=159.7

Q ss_pred             cccchHHHhhhC-CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCc-cCCCCCCcccchhhHHHHhh
Q 005588          166 VGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLR  243 (689)
Q Consensus       166 FG~pL~~ll~~~-~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~Dvh~VAslLK~fLR  243 (689)
                      ||+||..++.+. ++||.+|.+|+.||+++|+.+|||||++|+..+++++++.|++|.. ......|+|+||++||.|||
T Consensus         1 FG~~L~~~~~~~~~~iP~il~~ci~~ie~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~~LK~fLR   80 (211)
T cd04409           1 FGADFAQVAKKSPDGIPFIIKKCTSEIESRALCLKGIYRVNGAKSRVEKLCQAFENGKDLVELSELSPHDISNVLKLYLR   80 (211)
T ss_pred             CCCChHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeECCCcHHHHHHHHHHHHcCCCccccccCCHHHHHHHHHHHHH
Confidence            999999999874 5799999999999999999999999999999999999999999863 33456899999999999999


Q ss_pred             hCCCCCCChhhHHHHHHHHhcC---C-------------------HHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhh
Q 005588          244 ELPSSPVPASCCTALLEAYKID---R-------------------KEARISAMRSAILETFPEPNRRLLQRILRMMHTIS  301 (689)
Q Consensus       244 eLPePLlp~~ly~~~i~~~~~~---~-------------------~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va  301 (689)
                      +||+||||+++|+.|+.+.+..   +                   ...++.+++.+| ++||++|+.+|+||+.||++|+
T Consensus        81 eLPePLi~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~  159 (211)
T cd04409          81 QLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLL-RQLPAPNYNTLQFLIVHLHRVS  159 (211)
T ss_pred             hCCCcccCHHHHHHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999886421   0                   013467888866 6999999999999999999999


Q ss_pred             cccCCCCCCccchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 005588          302 SHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE  367 (689)
Q Consensus       302 ~~s~~NkMta~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen  367 (689)
                      +|++.|+||+.|||+||||+||||...+.              ...++.+......+.||++||.+
T Consensus       160 ~~s~~NkM~~~NLAivf~P~Llrp~~~~~--------------~~~~~~~~~~~~~~~~ve~li~~  211 (211)
T cd04409         160 EQAEENKMSASNLGIIFGPTLIRPRPTDA--------------TVSLSSLVDYPHQARLVELLITY  211 (211)
T ss_pred             cccccCCCChHHhhhhccccccCCCCCCc--------------chhHHHHhhhhhHHHHHHHHhhC
Confidence            99999999999999999999999873211              01123345566788999999974

PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins

Probab=100.00  E-value=1.7e-37  Score=309.21  Aligned_cols=184  Identities=26%  Similarity=0.425  Sum_probs=163.2

Q ss_pred             cccccchHHHhhh---CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCc-cCCCCCCcccchhhHH
Q 005588          164 LVVGRPILLALED---IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVK  239 (689)
Q Consensus       164 ~vFG~pL~~ll~~---~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~Dvh~VAslLK  239 (689)
                      ++||+||..++.+   .++||.+|.+|+.||+++|+.+|||||++|+...++++++.+++|.. .+..+.|||+||++||
T Consensus         1 ~~FGv~L~~l~~~~~~~~~vP~il~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~~~~~~~d~~~va~~lK   80 (189)
T cd04393           1 KVFGVPLQELQQAGQPENGVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLSKEADVCSAASLLR   80 (189)
T ss_pred             CcccccHHHHHhccCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHcCCCCCCccccCCHHHHHHHHH
Confidence            4899999999886   35799999999999999999999999999999999999999999974 4455689999999999


Q ss_pred             HHhhhCCCCCCChhhHHHHHHHHhcC-CHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhh
Q 005588          240 HVLRELPSSPVPASCCTALLEAYKID-RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM  318 (689)
Q Consensus       240 ~fLReLPePLlp~~ly~~~i~~~~~~-~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivf  318 (689)
                      .|||+||+||||.+.|+.|+++++.. +..+++..++.+| .+||+.|+.+|.+|+.||++|++|++.|+||+.|||+||
T Consensus        81 ~flr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~l~~li-~~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~nLA~vf  159 (189)
T cd04393          81 LFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRDLL-QQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVF  159 (189)
T ss_pred             HHHHhCCCccCCHHHHHHHHHHHHHccChHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHhhhhc
Confidence            99999999999999999999987654 6677889999966 699999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 005588          319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE  367 (689)
Q Consensus       319 aP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen  367 (689)
                      ||+|||.+..    .+               .+.....++.|+++||+|
T Consensus       160 ~P~l~~~~~~----~~---------------~~~~~~~~~~~~~~li~~  189 (189)
T cd04393         160 GPDVFHVYTD----VE---------------DMKEQEICSRIMAKLLEN  189 (189)
T ss_pred             cCceeCCCCC----cc---------------cHHHHHHHHHHHHHHhcC
Confidence            9999998731    11               123345578899999987

The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.

>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins

Probab=100.00  E-value=3.4e-37  Score=308.39  Aligned_cols=163  Identities=19%  Similarity=0.308  Sum_probs=151.9

Q ss_pred             cccchHHHhhhCC-CCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCcc---CCCCCCcccchhhHHHH
Q 005588          166 VGRPILLALEDID-GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE---FSADEDAHVIGDCVKHV  241 (689)
Q Consensus       166 FG~pL~~ll~~~~-~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~---~~~~~Dvh~VAslLK~f  241 (689)
                      ||+||..++.+.+ .||.+|.+|++||+++|+.+|||||++|+..+++++++.|++|...   .....|+|+||++||.|
T Consensus         1 FGv~L~~~~~r~~~~IP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f   80 (196)
T cd04387           1 FGVKISTVTKRERSKVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLKLY   80 (196)
T ss_pred             CCCCHHHHHHhcCCCCChHHHHHHHHHHHhCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHH
Confidence            9999999998754 5999999999999999999999999999999999999999998532   34568999999999999


Q ss_pred             hhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhccc
Q 005588          242 LRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPL  321 (689)
Q Consensus       242 LReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~  321 (689)
                      ||+||+||||+++|+.|+++....+...++.+++.++ .+||+.|+.+|++|+.||++|+++++.|||++.|||+||||+
T Consensus        81 LReLPePLip~~~y~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~  159 (196)
T cd04387          81 FRELPEPLFTDELYPNFAEGIALSDPVAKESCMLNLL-LSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGPT  159 (196)
T ss_pred             HHhCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHccc
Confidence            9999999999999999999999888889999999966 699999999999999999999999999999999999999999


Q ss_pred             ccCCCCCC
Q 005588          322 LLRPLLAG  329 (689)
Q Consensus       322 Llr~~~~~  329 (689)
                      |||++...
T Consensus       160 Llr~~~~~  167 (196)
T cd04387         160 LLRPSEKE  167 (196)
T ss_pred             cCCCCccc
Confidence            99998543

Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch

>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins

Probab=100.00  E-value=2.6e-37  Score=312.01  Aligned_cols=186  Identities=23%  Similarity=0.381  Sum_probs=157.7

Q ss_pred             cccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCc-cCC-CCCCcccchhhHHHHhh
Q 005588          166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFS-ADEDAHVIGDCVKHVLR  243 (689)
Q Consensus       166 FG~pL~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~-~~~Dvh~VAslLK~fLR  243 (689)
                      ||.||.+     ++++ +|.+|++||++ |+.+|||||++|+..+++++++.|++|.. .+. ..+|+|+||++||.|||
T Consensus         1 ~~~~~~~-----~~~~-~v~~~i~~l~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~~~~~~~~h~va~lLK~flR   73 (208)
T cd04392           1 FGAPLTE-----EGIA-QIYQLIEYLEK-NLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESGGFHAHDCATVLKGFLG   73 (208)
T ss_pred             CCCCccc-----cccH-HHHHHHHHHHh-CCCCcceeeCCCcHHHHHHHHHHHHcCCCCCcccccCCHHHHHHHHHHHHH
Confidence            7888843     3455 78899999998 99999999999999999999999999964 333 35799999999999999


Q ss_pred             hCCCCCCChhhHHHHHHHHh------------cCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCc
Q 005588          244 ELPSSPVPASCCTALLEAYK------------IDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTP  311 (689)
Q Consensus       244 eLPePLlp~~ly~~~i~~~~------------~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta  311 (689)
                      +||+||||.++|+.|+.+.+            ..+.+.++.+++.++ .+||+.|+.+|+||+.||++|++|++.||||+
T Consensus        74 eLPePLi~~~~y~~~~~i~~l~~~~~~~~~~~~~~~~~~i~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~  152 (208)
T cd04392          74 ELPEPLLTHAHYPAHLQIADLCQFDEKGNKTSAPDKERLLEALQLLL-LLLPEENRNLLKLILDLLYQTAKHEDKNKMSA  152 (208)
T ss_pred             hCCCccCCHHHHHHHHHHHHhhcccccccccCCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhcccCCCCH
Confidence            99999999999999987664            234567788999866 69999999999999999999999999999999


Q ss_pred             cchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005588          312 SAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES  376 (689)
Q Consensus       312 ~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~~~  376 (689)
                      .|||+||||+|+||+..+              ...+   ......++.||++||+||+.||+.+.
T Consensus       153 ~NLAivf~P~Ll~~~~~~--------------~~~~---~~~~~~~~~iv~~lI~~~~~iF~~~~  200 (208)
T cd04392         153 DNLALLFTPHLICPRNLT--------------PEDL---HENAQKLNSIVTFMIKHSQKLFKAPA  200 (208)
T ss_pred             HHHHHHhCcccCCCCCCC--------------HHHH---HHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence            999999999999986321              1111   12335678999999999999999875

The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins

Probab=100.00  E-value=4.3e-37  Score=309.94  Aligned_cols=195  Identities=22%  Similarity=0.318  Sum_probs=160.6

Q ss_pred             cccchHHHhhhC---CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCC--ccCC--CCCCcccchhhH
Q 005588          166 VGRPILLALEDI---DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK--TEFS--ADEDAHVIGDCV  238 (689)
Q Consensus       166 FG~pL~~ll~~~---~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~--~~~~--~~~Dvh~VAslL  238 (689)
                      ||+||..++.+.   ..||.+|.+|+.||+.+|+.+|||||++|+..+++.+++.|+++.  ..+.  ...|+|+||++|
T Consensus         1 FGvpL~~l~~re~~~~~IP~iv~~ci~~L~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~lL   80 (207)
T cd04379           1 FGVPLSRLVEREGESRDVPIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVL   80 (207)
T ss_pred             CCCChHHHHhhcCCCCCcChHHHHHHHHHHHcCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHHHH
Confidence            999999999873   469999999999999999999999999999999999999999874  2222  234899999999


Q ss_pred             HHHhhhCCCCCCChhhHHHHHHHHhcCC---HHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchh
Q 005588          239 KHVLRELPSSPVPASCCTALLEAYKIDR---KEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA  315 (689)
Q Consensus       239 K~fLReLPePLlp~~ly~~~i~~~~~~~---~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLA  315 (689)
                      |.|||+||+||||.++|+.|+++.....   ...++..++.+| ++||+.|+.+|+||+.||++|+.|++.||||+.|||
T Consensus        81 K~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~~~~~~~li-~~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NLA  159 (207)
T cd04379          81 KDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSII-DCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLA  159 (207)
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHHhccChhhHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhH
Confidence            9999999999999999999999876543   234466788766 699999999999999999999999999999999999


Q ss_pred             hhhcccccCCCCCCCC-ccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhc
Q 005588          316 ACMAPLLLRPLLAGEC-ELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEY  368 (689)
Q Consensus       316 ivfaP~Llr~~~~~~~-~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~  368 (689)
                      +||||+||+++..+.. .+....+|....+       ....+...++.+||+-|
T Consensus       160 ivf~P~Ll~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~  206 (207)
T cd04379         160 VCFGPVLMFCSQEFSRYGISPTSKMAAVST-------VDFKQHIEVLHYLLQIW  206 (207)
T ss_pred             HhhccccCCCCcccccccCCCCccccccch-------hhHHHHHHHHHHHHHhc
Confidence            9999999999864432 1111222322222       23345678999999866

Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs

Probab=100.00  E-value=3.3e-36  Score=298.72  Aligned_cols=180  Identities=21%  Similarity=0.392  Sum_probs=162.0

Q ss_pred             ccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCcc---CCCCCCcccchhhHHHHhh
Q 005588          167 GRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE---FSADEDAHVIGDCVKHVLR  243 (689)
Q Consensus       167 G~pL~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~---~~~~~Dvh~VAslLK~fLR  243 (689)
                      |.+|+...-...+||.+|.+|+.||+++|+.+|||||++|+...++++++.|+.+...   .....|||+||++||.|||
T Consensus         2 ~~~l~~~~~~~~~iP~~v~~~i~~l~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~yLr   81 (184)
T cd04385           2 GPALEDQQLTDNDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKRFLR   81 (184)
T ss_pred             CccHHHhhhCCCCCChHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHHHHH
Confidence            7778777777789999999999999999999999999999999999999999886422   2457899999999999999


Q ss_pred             hCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhccccc
Q 005588          244 ELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLL  323 (689)
Q Consensus       244 eLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Ll  323 (689)
                      +||+||||.++|+.|+.+.+..+..+++..++.+| ..||+.|+.+|++|+.||++|+.|++.|||++.|||+||||+||
T Consensus        82 eLP~pLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i-~~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nLaiv~~P~ll  160 (184)
T cd04385          82 DLPDPLLTSELHAEWIEAAELENKDERIARYKELI-RRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPTLF  160 (184)
T ss_pred             hCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhhhhhccccC
Confidence            99999999999999999999888899999999977 59999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhc
Q 005588          324 RPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEY  368 (689)
Q Consensus       324 r~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~  368 (689)
                      |++..                     ..........||+.||+||
T Consensus       161 ~~~~~---------------------~~~~~~~~~~v~~~Li~~~  184 (184)
T cd04385         161 QTDEH---------------------SVGQTSHEVKVIEDLIDNY  184 (184)
T ss_pred             CCCcc---------------------chhHHHHHHHHHHHHHhcC
Confidence            98731                     0123346789999999998

ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins

Probab=100.00  E-value=6.1e-36  Score=298.71  Aligned_cols=177  Identities=21%  Similarity=0.321  Sum_probs=157.9

Q ss_pred             CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCC-ccCCCCCCcccchhhHHHHhhhCCCCCCChhhH
Q 005588          177 IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRELPSSPVPASCC  255 (689)
Q Consensus       177 ~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~Dvh~VAslLK~fLReLPePLlp~~ly  255 (689)
                      ...||.+|.+|+.||+++|+.+|||||++|+..+++++++.|++|. .......|+|+||++||.|||+||+||||+++|
T Consensus        14 ~~~IP~~l~~ci~~ie~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~~~~~~~d~h~vaslLK~fLReLPePLi~~~~y   93 (193)
T cd04382          14 SPMIPALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRGKTVPNLSKVDIHVICGCLKDFLRSLKEPLITFALW   93 (193)
T ss_pred             CCCccHHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHHcCCCCcccccCCHHHHHHHHHHHHHhCCCcCCCHHHH
Confidence            3469999999999999999999999999999999999999999885 334556799999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccCCCCCCCCcccc
Q 005588          256 TALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELED  335 (689)
Q Consensus       256 ~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr~~~~~~~~le~  335 (689)
                      +.|+++.+..+.+.++..++.++ ..||+.|+.+|+||+.||++|+. ++.||||+.|||+||||+||+++..+.     
T Consensus        94 ~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~NLAivf~P~L~~~~~~~~-----  166 (193)
T cd04382          94 KEFMEAAEILDEDNSRAALYQAI-SELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIVGYSVPNP-----  166 (193)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHhc-cccCCCChHHhhhhhhchhcCCCCCCc-----
Confidence            99999999988899999999976 69999999999999999999999 999999999999999999999873211     


Q ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccc
Q 005588          336 DFDMNGDNSAQLLAAANAANNAQAIIATLLEEYEN  370 (689)
Q Consensus       336 ~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~  370 (689)
                                ..++++..+..++.+|+.||++-+.
T Consensus       167 ----------~~~~~~~~~~~~~~vve~Li~~~~~  191 (193)
T cd04382         167 ----------DPMTILQDTVRQPRVVERLLEIPSD  191 (193)
T ss_pred             ----------cHHHHHHHhHHHHHHHHHHHhCCcc
Confidence                      1244566677788999999998654

MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway

>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]

Probab=100.00  E-value=2.8e-37  Score=353.60  Aligned_cols=339  Identities=18%  Similarity=0.252  Sum_probs=244.6

Q ss_pred             ceEEEEeeeee----ecC----CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeee-----eeCcEEcCCCccee--
Q 005588           18 TVFKSGPLFIS----SKG----IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNL-----TLGGIDLNNSGSVV--   82 (689)
Q Consensus        18 ~V~KeG~L~l~----KkG----~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l-----~L~~I~L~~~~sv~--   82 (689)
                      ...++||||+.    |+|    .....|+.-|.+|.++.|+.|++.....++..+...-     .-..+.+..|...+  
T Consensus       922 d~~megWly~~q~~SkkGk~tGssLr~wk~~y~~l~ghsl~L~ss~re~~~~~aas~as~~~st~tts~c~nscltdI~y 1001 (1973)
T KOG4407|consen  922 DSEMEGWLYVLQSSSKKGKATGSSLREWKLSYTGLHGHSLVLNSSAREHNSQSAASLASSSCSTATTSECLNSCLTDIQY 1001 (1973)
T ss_pred             hhhhhcceeeeeecccCCcccCcchhhhhhHHHHhccccceecccccccCcchhhhhcccccccccCccccccchhhhhh
Confidence            36789999965    444    4578899999999999999999876533322111100     00112222222211  


Q ss_pred             eccCCcceEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHHhhCCcchhccCc-------------ccc----------
Q 005588           83 VREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGH-------------NGI----------  139 (689)
Q Consensus        83 ~~~~kk~~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~~aP~~~~~~g~-------------~~~----------  139 (689)
                      ....++..|.++.  -+...+.|+|++.++|-.|+..+++......-...|++.             +++          
T Consensus      1002 setkrn~vfRLTt--~d~ce~lfqaeDrddmlgG~~ttq~St~~na~~~~V~~r~~a~~s~~~s~~~~~kae~~pst~~s 1079 (1973)
T KOG4407|consen 1002 SETKRNQVFRLTT--NDLCEGLFQAEDRDDMLGGLSTTQSSTTENAKNRLVMHRYIAKNSQLQSPTANKKAETDPSTVPS 1079 (1973)
T ss_pred             hhhhhhhHHHhHH--HHHHhHhhccCccccccchhhhhhhcccccccccccccchhhhcccccCccccchhhcCCCCCcc
Confidence            1123445566654  134679999999999999999997665321111112210             000          


Q ss_pred             -----------ccCCCCc------------cccCcc------ccccCCCCC-----------------------CCcccc
Q 005588          140 -----------FRNDTND------------TIEGSF------HQWRDKRPV-----------------------KSLVVG  167 (689)
Q Consensus       140 -----------f~~~~~~------------~~~~~~------~~~k~~~~~-----------------------~~~vFG  167 (689)
                                 |.-....            ..+...      ..||+-.+.                       +-.+||
T Consensus      1080 sl~~~at~~~a~s~~~sq~~~p~~~se~k~~p~~d~~~PKsk~~Wkk~~~~~~gsg~g~~~~~~g~~~~~~a~~~~~~~G 1159 (1973)
T KOG4407|consen 1080 SLQTMATTSSAFSHHSSQAMGPSRDSENKEAPTADATTPKSKRKWKKSKAAKQGSGGGSSGSSSGSQQQGAAGAPQPVLG 1159 (1973)
T ss_pred             hhHHHHHHhhhccCccccccCcccccccccCCcccCCCCccccchhhhhhhhccCCCCCCCCcccccccccccCcCcccc
Confidence                       1100000            001111      223321100                       124999


Q ss_pred             cchHHHhh--hCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCc------cCCCCCCcccchhhHH
Q 005588          168 RPILLALE--DIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT------EFSADEDAHVIGDCVK  239 (689)
Q Consensus       168 ~pL~~ll~--~~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~------~~~~~~Dvh~VAslLK  239 (689)
                      |+|..---  -.+-||.+|..|+..++.+||.+.||||++||...|..|.+.++.+.+      .+..+.|+++|.+|||
T Consensus      1160 Vrl~dCP~~~~n~yVP~iV~~C~~vVEt~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrDvNVVSSLLK 1239 (1973)
T KOG4407|consen 1160 VRLADCPTGSCNDYVPMIVQACVCVVETYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRDVNVVSSLLK 1239 (1973)
T ss_pred             cccccCCcccccccchHHHHHHHHHHhhcCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhhhHHHHHHHH
Confidence            99954221  134599999999999999999999999999999999999999999842      2345679999999999


Q ss_pred             HHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhc
Q 005588          240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMA  319 (689)
Q Consensus       240 ~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfa  319 (689)
                      .|||.||+||||..+|..||++-+..+.-+|+..||.|| +.||.++|.+|++|+.||.+|+.|+++|||-+.||||+||
T Consensus      1240 ~F~RkLPepL~t~~~Y~~FIeAnrk~~~l~Rl~~Lr~l~-~~LPrhhYeTlkfLi~HL~~Vt~nsdvNkMEprNLAi~FG 1318 (1973)
T KOG4407|consen 1240 MFLRKLPEPLLTDKLYPFFIEANRKSTHLNRLHKLRNLL-RKLPRHHYETLKFLIVHLSEVTKNSDVNKMEPRNLAIMFG 1318 (1973)
T ss_pred             HHHHhCCcccccccchhhhhhhcccccHHHHHHHHHHHH-HhCccchHHHHHHHHHHHHHHhcccccccccccceeEEec
Confidence            999999999999999999999999999999999999966 7999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005588          320 PLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES  376 (689)
Q Consensus       320 P~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~~~  376 (689)
                      |+|+|++.              |+.+   .+..++...+.||+.||.+|+++|++.-
T Consensus      1319 PsiVRts~--------------Dnm~---tmVthM~dQckIVEtLI~~~dwfF~esg 1358 (1973)
T KOG4407|consen 1319 PSIVRTSD--------------DNMA---TMVTHMSDQCKIVETLIHYNDWFFDESG 1358 (1973)
T ss_pred             cceeccCC--------------ccHH---HHhhcchhhhhHHHHHHhhhhheeccCC
Confidence            99999872              1222   2345556789999999999999999854

>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain

Probab=100.00  E-value=4.4e-36  Score=298.44  Aligned_cols=178  Identities=21%  Similarity=0.245  Sum_probs=153.0

Q ss_pred             cccchHHHhhhC------CCCcHHHHHHHHHHHh-cCCCcCCeeecCCCHHHHHHHHHHhhcCCccCCCCCCcccchhhH
Q 005588          166 VGRPILLALEDI------DGGPSFLEKALRFLEK-FGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV  238 (689)
Q Consensus       166 FG~pL~~ll~~~------~~VP~iL~~~i~~Le~-~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~Dvh~VAslL  238 (689)
                      ||+||++++.+.      ..||.+|.+|+.+|.+ +|+.+|||||++|+..+++++++.+++|...+....|+|+||++|
T Consensus         1 FG~~L~~~~~r~~~~~~~~~iP~il~~~i~~l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~d~h~va~lL   80 (187)
T cd04389           1 FGSSLEEIMDRQKEKYPELKLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQWDYPLSGLEDPHVPASLL   80 (187)
T ss_pred             CCCCHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcCCCCccccCCHHHHHHHH
Confidence            999999998652      3599999999999865 899999999999999999999999999987666678999999999


Q ss_pred             HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhccc--CCCCCCccchhh
Q 005588          239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHA--HENRMTPSAVAA  316 (689)
Q Consensus       239 K~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s--~~NkMta~NLAi  316 (689)
                      |.|||+||+||||.++|+.++.+...      ...++.+| .+||+.|+.+|.||+.||+.|++++  +.||||++|||+
T Consensus        81 K~fLReLpePli~~~~~~~~i~~~~~------~~~~~~li-~~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAi  153 (187)
T cd04389          81 KLWLRELEEPLIPDALYQQCISASED------PDKAVEIV-QKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAM  153 (187)
T ss_pred             HHHHHhCCCCCCCHHHHHHHHHhhcC------HHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Confidence            99999999999999999999886432      23456655 6999999999999999999999754  789999999999


Q ss_pred             hhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 005588          317 CMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE  367 (689)
Q Consensus       317 vfaP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen  367 (689)
                      ||||+|||++..++                 ...+.++.+...+|+.||+|
T Consensus       154 vf~P~l~~~~~~~~-----------------~~~~~~~~~~~~~~~~lI~~  187 (187)
T cd04389         154 VFAPNILRCTSDDP-----------------RVIFENTRKEMSFLRTLIEH  187 (187)
T ss_pred             HHccccCCCCCCCH-----------------HHHHHccHHHHHHHHHHhcC
Confidence            99999999873211                 22345566788999999987

Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins

Probab=100.00  E-value=5.9e-36  Score=302.94  Aligned_cols=189  Identities=16%  Similarity=0.240  Sum_probs=161.5

Q ss_pred             cccchHHHhhhC-CCCcHHHHHHHHHHHhcC--CCcC----CeeecCCCHHHHHHHHHHhhcCCccC-----CCCCCccc
Q 005588          166 VGRPILLALEDI-DGGPSFLEKALRFLEKFG--TKVE----GILRQAADVEEVDRRVQEYEQGKTEF-----SADEDAHV  233 (689)
Q Consensus       166 FG~pL~~ll~~~-~~VP~iL~~~i~~Le~~G--l~~E----GIFR~sG~~~~v~~L~~~ld~g~~~~-----~~~~Dvh~  233 (689)
                      ||+||..++... ..||.+|.+|+.||+++|  +..+    ||||++|+.+.+++|++.|++|....     ...+|+|+
T Consensus         1 FGv~L~~~~~~~~~~VP~vV~~ci~~ie~~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~dv~~   80 (212)
T cd04399           1 FGVDLETRCRLDKKVVPLIVSAILSYLDQLYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKFEPST   80 (212)
T ss_pred             CCCcHHHHHhhcCCCCCHHHHHHHHHHHHhCccccCCcceeeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccCCHHH
Confidence            999999999875 469999999999999965  3333    99999999999999999999985332     34689999


Q ss_pred             chhhHHHHhhhCCCCCCChhhHHHHHHHHhc------CCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCC
Q 005588          234 IGDCVKHVLRELPSSPVPASCCTALLEAYKI------DRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHEN  307 (689)
Q Consensus       234 VAslLK~fLReLPePLlp~~ly~~~i~~~~~------~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~N  307 (689)
                      ||++||.|||+||+||||+++|+.|+++...      .+.++++.+++.++ .+||+.|+.+|++|+.||.+|+.++..|
T Consensus        81 va~~LK~ylReLPepL~~~~~y~~~~~~~~~~~~~~~~~~~~r~~~l~~~l-~~LP~~n~~~L~~li~hL~rv~~~~~~~  159 (212)
T cd04399          81 VASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSDTARIQGLQSTL-SQLPKSHIATLDAIITHFYRLIEITKMG  159 (212)
T ss_pred             HHHHHHHHHHHCCCccCCHHHHHHHHHHHHhccccccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999887532      46789999999966 6999999999999999999999987666


Q ss_pred             ---CCCccchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 005588          308 ---RMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD  374 (689)
Q Consensus       308 ---kMta~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~  374 (689)
                         ||+++|||+||||+|+|+......      .             ....+...+|++||+||+.||++
T Consensus       160 ~~~kM~~~nLa~vfgp~llr~~~~~~~------~-------------~~~~~~~~~~e~Li~~~~~iF~~  210 (212)
T cd04399         160 ESEEEYADKLATSLSREILRPIIESLL------T-------------IGDKHGYKFFRDLLTHKDQIFSE  210 (212)
T ss_pred             cccccCHHHHHHHhhhhhcCCCccccc------c-------------cccHHHHHHHHHHHHhHHHhccc
Confidence               699999999999999998742210      0             11245678999999999999986

Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins

Probab=100.00  E-value=1.8e-35  Score=297.40  Aligned_cols=171  Identities=24%  Similarity=0.406  Sum_probs=150.1

Q ss_pred             CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHH-hhcC-----CccCCC-CCCcccchhhHHHHhhhCCCCCC
Q 005588          178 DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQE-YEQG-----KTEFSA-DEDAHVIGDCVKHVLRELPSSPV  250 (689)
Q Consensus       178 ~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~-ld~g-----~~~~~~-~~Dvh~VAslLK~fLReLPePLl  250 (689)
                      +..|.||.+|+.||+++|+.+|||||++|+..+|+++++. ++.+     ..++.. .+|+|+||++||.|||+||+|||
T Consensus        26 ~~~~~iv~~ci~~le~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~fLReLPePLi  105 (203)
T cd04374          26 DIGFKFVRKCIEAVETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPEPLM  105 (203)
T ss_pred             cccHHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHHHHcCCCCcC
Confidence            3456689999999999999999999999999999999875 5654     233333 57999999999999999999999


Q ss_pred             ChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccCCCCCCC
Q 005588          251 PASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGE  330 (689)
Q Consensus       251 p~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr~~~~~~  330 (689)
                      |+++|+.|+.+.+..+.+.++..++.+| .+||+.|+.+|++|+.||++|+.|++.|||++.|||+||||+|||+...  
T Consensus       106 ~~~~y~~~i~~~~~~~~~~ri~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~--  182 (203)
T cd04374         106 TYELHNDFINAAKSENLESRVNAIHSLV-HKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQEE--  182 (203)
T ss_pred             CHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhccccCCCCCc--
Confidence            9999999999999988899999999976 6999999999999999999999999999999999999999999998721  


Q ss_pred             CccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 005588          331 CELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE  367 (689)
Q Consensus       331 ~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen  367 (689)
                                  +    .+++......+.+|++||+|
T Consensus       183 ------------~----~~~~~~~~~~~~vve~LIeN  203 (203)
T cd04374         183 ------------T----VAAIMDIKFQNIVVEILIEN  203 (203)
T ss_pred             ------------c----HHHHHHhHHHHHHhhhHhcC
Confidence                        0    22345566778899999987

Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase)

Probab=100.00  E-value=4.2e-35  Score=292.69  Aligned_cols=177  Identities=19%  Similarity=0.279  Sum_probs=150.1

Q ss_pred             hHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCC-ccCCCCCCcccchhhHHHHhhhCCCC
Q 005588          170 ILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRELPSS  248 (689)
Q Consensus       170 L~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~Dvh~VAslLK~fLReLPeP  248 (689)
                      |.+.+...+.+|.+|.+|+.+|+++|+++|||||++|+.. +.++++.|+.+. ......+|+|+||++||.|||+||+|
T Consensus         5 ~~~~~~~~~~~P~iv~~ci~~IE~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~~d~~~~dv~~va~~LK~ylReLPeP   83 (200)
T cd04388           5 LTEQFSPPDVAPPLLIKLVEAIEKKGLESSTLYRTQSSSS-LTELRQILDCDAASVDLEQFDVAALADALKRYLLDLPNP   83 (200)
T ss_pred             HHHHhCCCCCCCHHHHHHHHHHHHhCCCCCceeeCCCccH-HHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhCCCc
Confidence            3344444578999999999999999999999999999875 778999999853 33345789999999999999999999


Q ss_pred             CCChhhHHHHHHHHh-cCCHHHHHHHHHHHHh-ccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccCCC
Q 005588          249 PVPASCCTALLEAYK-IDRKEARISAMRSAIL-ETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL  326 (689)
Q Consensus       249 Llp~~ly~~~i~~~~-~~~~e~ri~~l~~lIl-~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr~~  326 (689)
                      |||+++|+.|+++.+ ..+.++++..++.+|. ..||+.|+.+|+||+.||++|++|+..|+||++|||+||||+|||++
T Consensus        84 Lip~~~y~~fi~~~~~~~~~~~~~~~l~~li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL~r~~  163 (200)
T cd04388          84 VIPAPVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLFRFQ  163 (200)
T ss_pred             cCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhhcCCC
Confidence            999999999999874 5567788999998662 27999999999999999999999999999999999999999999997


Q ss_pred             CCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhc
Q 005588          327 LAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEY  368 (689)
Q Consensus       327 ~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~  368 (689)
                      ....                     ....+...+|++||.++
T Consensus       164 ~~~~---------------------~~~~~~~~vvE~Li~~~  184 (200)
T cd04388         164 PASS---------------------DSPEFHIRIIEVLITSE  184 (200)
T ss_pred             cccc---------------------cchhhHHHHHHHHHHHH
Confidence            4311                     11234678999999863

This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p

>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-32  Score=305.22  Aligned_cols=320  Identities=19%  Similarity=0.300  Sum_probs=234.7

Q ss_pred             CCCcEEEEEEEeCCeEEEEcCCCCCCCCC---CceeeeeeCcEEcCCCcceeeccCCcceEEEEeCCCCCcEEEEEecCh
Q 005588           34 WKSWKKRWFILTRTSLVFFKNDPSALPQR---GGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETS  110 (689)
Q Consensus        34 ~k~WkKRWFVL~~~~L~YYKd~~~~~p~~---~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~~~~rty~fqAdSe  110 (689)
                      ...|..-|..+.++.++||.+.+.+..-+   ...-........+...............+++......+..|+++-.++
T Consensus       270 ~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~~~~~~~sps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ne  349 (650)
T KOG1450|consen  270 STVWETSTDALTGNPLYYYSDTGSTTWSGHHSPPEKAEIAQSPSLSPAMVSASKNKSTRKNTLWLTTNRTSKVLNRSHNE  349 (650)
T ss_pred             CcccccchhhcccccceeecccCcccccCCCCccccccCCCCcccchhhhccccccCCccceeeeeecCCceeeecCCCC
Confidence            34499999999999999998876554322   111111111122222111111111222344444344567899999999


Q ss_pred             HHHHHHHHHHHHHHhhCCcchhccCccccccC--CC--------------------------Ccc---ccCc--------
Q 005588          111 EDLYEWKTALELALAQAPSAALVMGHNGIFRN--DT--------------------------NDT---IEGS--------  151 (689)
Q Consensus       111 eE~~eWi~AL~~ai~~aP~~~~~~g~~~~f~~--~~--------------------------~~~---~~~~--------  151 (689)
                      .....|..++..++...|+++..-.+ |.-+.  +.                          +..   +.+.        
T Consensus       350 t~~~d~~~~~~~~~~~~~~~~s~~s~-g~~~~~~P~s~~~~~~~~~~~~~~sp~ss~p~~~~ss~ist~~~~~~~~~~~~  428 (650)
T KOG1450|consen  350 TSFEDWSSNLPEVINELPNSASPNSQ-GDLESTLPESDSPESHTSEPEEDVSPVSSKPLEGLSSPISTTLGPECHEQQDP  428 (650)
T ss_pred             ccccchhhcchhhhhccCCCCCCCCC-CCCCCCCCCCccccccccCcccccCcccccccccccccceecCCcccccccch
Confidence            99999999999999866553322111 10000  00                          000   0000        


Q ss_pred             -------------cccccCCC-CCCCcccccchHHHhhhC-CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHH
Q 005588          152 -------------FHQWRDKR-PVKSLVVGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQ  216 (689)
Q Consensus       152 -------------~~~~k~~~-~~~~~vFG~pL~~ll~~~-~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~  216 (689)
                                   ....+.++ +...+|||++|..+|++. +.||.+|.+|+..|+..|++.+||||++|+...|++|+.
T Consensus       429 ~~~l~~~~s~rp~v~s~~~~g~~k~~~vFGs~Lealc~rE~~~vP~~V~~c~~~IE~~GLd~~GiYRVsgnl~~Vnklr~  508 (650)
T KOG1450|consen  429 QKKLTKNFSTRPIVQSSREPGKPKFDKVFGSPLEALCQRENGLVPKIVRLCIEHIEKFGLDSDGIYRVSGNLASVNKLRE  508 (650)
T ss_pred             HHHHHHhhhccchhhhccccCccccCcccCccHHHHhhccCCCcchHHHHHHHHHhhhcccCCceeeecchHHHHHHHHH
Confidence                         00012222 223689999999999985 569999999999999999999999999999999999999


Q ss_pred             HhhcCC-ccC--CCCCCcccchhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHH
Q 005588          217 EYEQGK-TEF--SADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRI  293 (689)
Q Consensus       217 ~ld~g~-~~~--~~~~Dvh~VAslLK~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~L  293 (689)
                      +++... ..+  ..+.|+|+|+++||.|||+||+||+|..++..|..+........+...+..+| ..||.+|+.||+||
T Consensus       509 ~~d~d~~l~l~~~~~~dihai~galK~ffreLpdpL~p~~l~~~f~~a~~~~~~~~r~~~~~~li-~~lP~~n~~Tlr~l  587 (650)
T KOG1450|consen  509 QSDQDNSLDLADDRWDDIHAITGALKTFFRELPDPLFPKALSKDFTVALQGELSHTRVDKVEELI-GLLPDANYQTLRYL  587 (650)
T ss_pred             hcCccccccccccchhHHHHHHHHHHHHHHhcCCcccChhHhHHHHHHhcccchhhHHHHHHHHH-hhCCCcchhHHHHH
Confidence            999543 333  33479999999999999999999999999999999999999899999999987 59999999999999


Q ss_pred             HHHHHHhhcccCCCCCCccchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 005588          294 LRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFD  373 (689)
Q Consensus       294 l~~L~~Va~~s~~NkMta~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~  373 (689)
                      +.||++|..|++.|||+.+||||||||+|+.+....                  ...+........||+.||+++..+|+
T Consensus       588 v~HL~rv~shs~kNrMs~~NLaIVfgpTl~~~~~~~------------------~~~a~~~~~~~~ivq~lle~~~~~f~  649 (650)
T KOG1450|consen  588 VRHLRRVLSHSDKNRMSRHNLAIVFGPTLIKPEQET------------------SSEAIHSTYQSQIVQLLLENVSSAFG  649 (650)
T ss_pred             HHHHHHHHhccccccccccceEEEeccccccccccc------------------cchhhHHhHHHHHHHHHHHhhHhhcc
Confidence            999999999999999999999999999999965211                  01233456678999999999999997

>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases

Probab=99.98  E-value=6.8e-32  Score=264.30  Aligned_cols=170  Identities=29%  Similarity=0.488  Sum_probs=154.9

Q ss_pred             CCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCccC--CCCCCcccchhhHHHHhhhCCCCCCChhhHH
Q 005588          179 GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF--SADEDAHVIGDCVKHVLRELPSSPVPASCCT  256 (689)
Q Consensus       179 ~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~--~~~~Dvh~VAslLK~fLReLPePLlp~~ly~  256 (689)
                      .||.+|.+|+.||+++|+.+|||||++|+..+++++++.+++|....  ...+|+|+||++||.|||+||+||||.+.|+
T Consensus         2 ~vP~~l~~~~~~l~~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~~   81 (174)
T smart00324        2 PIPIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIPYELYE   81 (174)
T ss_pred             CCChHHHHHHHHHHHcCCCccceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHHH
Confidence            58999999999999999999999999999999999999999987544  6789999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccCCCCCCCCccccc
Q 005588          257 ALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDD  336 (689)
Q Consensus       257 ~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr~~~~~~~~le~~  336 (689)
                      .|+.+....+..+++..++.++ .+||+.|+.+|.+|+.||+.|+.|++.|+|++.|||+||||+|+|++..+       
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~-~~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~~~-------  153 (174)
T smart00324       82 EFIEAAKVEDETERLRALRELI-SLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGE-------  153 (174)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCccc-------
Confidence            9999998888889999999966 69999999999999999999999999999999999999999999987321       


Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 005588          337 FDMNGDNSAQLLAAANAANNAQAIIATLLEE  367 (689)
Q Consensus       337 ~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen  367 (689)
                                 ........+...+|++||+|
T Consensus       154 -----------~~~~~~~~~~~~~i~~li~~  173 (174)
T smart00324      154 -----------VASLKDIRHQNTVVETLIEN  173 (174)
T ss_pred             -----------HHHHHHHHHHHHHHHHHHhc
Confidence                       11234556788999999987

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.

>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]

Probab=99.98  E-value=3.7e-32  Score=303.91  Aligned_cols=323  Identities=19%  Similarity=0.331  Sum_probs=240.1

Q ss_pred             CceEEEEeeeeeecCC--------CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee--cc-
Q 005588           17 NTVFKSGPLFISSKGI--------GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV--RE-   85 (689)
Q Consensus        17 ~~V~KeG~L~l~KkG~--------~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~--~~-   85 (689)
                      ..+...|+||..-...        .+.--.++||||-|+.|+||.+.....|.+         .|.+....++.+  .+ 
T Consensus       490 ~s~~~~~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~S~tP~~---------lI~~~Eivclav~~pd~  560 (1186)
T KOG1117|consen  490 QSTFLCGFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEKSTTPNG---------LININEIVCLAVHPPDT  560 (1186)
T ss_pred             ccccccceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcCCCCCCc---------eeeccceEEEeecCCCC
Confidence            4456669999552211        134467999999999999999988877443         344443322211  11 


Q ss_pred             --CCcceEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHHhhCCcchh--------ccC-------------ccccccC
Q 005588           86 --DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAAL--------VMG-------------HNGIFRN  142 (689)
Q Consensus        86 --~kk~~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~~aP~~~~--------~~g-------------~~~~f~~  142 (689)
                        ...++|++..-...+|.|+|-+++.++...|..+|.++.  .|..+.        ..|             ++|+|..
T Consensus       561 ~pn~~~~f~fE~~l~~er~~~fgle~ad~l~~wt~aiaKhf--vp~~~e~l~a~~~~llg~l~~kd~~~~~~~r~gwfsl  638 (1186)
T KOG1117|consen  561 YPNTGFIFIFEIYLPGERVFLFGLETADALRKWTEAIAKHF--VPLFAENLLAADYDLLGRLFYKDCHALDQARKGWFSL  638 (1186)
T ss_pred             CCCcCceeEEEEeecccceEEeecccHHHHHHHHHHHHHhc--CchHHHHhccchhhhhhhhhhcChhhhhhccccceec
Confidence              123556665555678999999999999999999998875  333221        111             3677776


Q ss_pred             CCCcc--------cc---------------CccccccCCCCCCCcccccch----------------------------H
Q 005588          143 DTNDT--------IE---------------GSFHQWRDKRPVKSLVVGRPI----------------------------L  171 (689)
Q Consensus       143 ~~~~~--------~~---------------~~~~~~k~~~~~~~~vFG~pL----------------------------~  171 (689)
                      +.+..        .+               ++..+.-++.++--..=|+.|                            .
T Consensus       639 ~gssl~~~~~~~~ve~d~~hlrrlqElsi~s~~~n~~K~~~l~lve~grTLYI~g~~rldft~W~~AIekaa~~~gt~Lq  718 (1186)
T KOG1117|consen  639 DGSSLHFCLQMQPVEEDRMHLRRLQELSISSMVQNGEKLDVLVLVEKGRTLYIQGETRLDFTVWHTAIEKAAGTDGTALQ  718 (1186)
T ss_pred             CCCeeEEecCCCcCchhHHHHHHHHHHhhhhccCCcccccceEEEeeccEEEEecCCcchHHHHHHHHHHHhcCCcchhh
Confidence            55431        11               112221111111111112222                            1


Q ss_pred             HHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCccC---CCCCCcccchhhHHHHhhhCCCC
Q 005588          172 LALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF---SADEDAHVIGDCVKHVLRELPSS  248 (689)
Q Consensus       172 ~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~---~~~~Dvh~VAslLK~fLReLPeP  248 (689)
                      +..-..+.||.||..||.|+.++|+..|||||++|...++.+|...|-+....+   ..+.-+.+|+++||+|||+|++|
T Consensus       719 eqqLs~~dIPvIVd~CI~FVTqyGl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvLk~Flrdlddp  798 (1186)
T KOG1117|consen  719 EQQLSKNDIPVIVDSCIAFVTQYGLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVLKRFLRDLDDP  798 (1186)
T ss_pred             hhhccCCCCcEehHHHHHHHHHhCccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHHHHHHHhCCcc
Confidence            111114679999999999999999999999999999999999999998764322   34567899999999999999999


Q ss_pred             CCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccCCCCC
Q 005588          249 PVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLA  328 (689)
Q Consensus       249 Llp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr~~~~  328 (689)
                      |+|.++|..|+++....+.++++..+..+| ..||..||.+|..||.||++|..+++.|+|+++|||+||||+||.....
T Consensus       799 Lft~~~~~~w~eaae~~d~~Er~~rY~~lI-~~lp~VnRaTLkalIgHLy~Vqk~s~~N~mnvhNLAlVFa~sLFqTdgq  877 (1186)
T KOG1117|consen  799 LFTKELYPYWIEAAETQDDKERIKRYGALI-RSLPGVNRATLKALIGHLYRVQKCSEINQMNVHNLALVFAPSLFQTDGQ  877 (1186)
T ss_pred             ccchhhhhhHHHhhhccchHHHHHHHHHHH-hhcccccHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhheecCCC
Confidence            999999999999999999999999999987 5999999999999999999999999999999999999999999986511


Q ss_pred             CCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005588          329 GECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES  376 (689)
Q Consensus       329 ~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~~~  376 (689)
                                               ..+..+|++-||.+|..+|.-+.
T Consensus       878 -------------------------dehevnVledLingYvvVF~v~e  900 (1186)
T KOG1117|consen  878 -------------------------DEHEVNVLEDLINGYVVVFEVDE  900 (1186)
T ss_pred             -------------------------chhhhhHHHHHhcCceEEEEecH
Confidence                                     13467899999999999998654

>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]

Probab=99.97  E-value=1.6e-30  Score=290.65  Aligned_cols=295  Identities=18%  Similarity=0.176  Sum_probs=211.9

Q ss_pred             CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCCCCCcEEEEEecChHH
Q 005588           33 GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSED  112 (689)
Q Consensus        33 ~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~~~~rty~fqAdSeeE  112 (689)
                      ..|.|.+|++....-.++||.+.+.....+..    .+.+..+.....  ....  +-+.|.                ..
T Consensus        49 ~ek~~~~r~~~~~~~~~~~~~~~~s~~~~~~~----~~~~~~~~~~~~--e~e~--~~~kie----------------~~  104 (577)
T KOG4270|consen   49 EEKNLQRRVSDMDSEQLRLFQAQKSSGEEGLF----RLPGAKIDTLKE--EEEE--CGMKIE----------------QP  104 (577)
T ss_pred             HHHHHHhhhhhcchhhhhhhhhhhhhhhcccc----ccCcchhhhhhc--hHHh--hcCccc----------------cC
Confidence            36789999999999999999887766533221    111111111000  0011  112221                11


Q ss_pred             HHHHHHHHHHHHhhCCcchhccCccccccCCCCccccCccccccCCCCCCCcccccchHHHhhh----CCCCcHHHHHHH
Q 005588          113 LYEWKTALELALAQAPSAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPILLALED----IDGGPSFLEKAL  188 (689)
Q Consensus       113 ~~eWi~AL~~ai~~aP~~~~~~g~~~~f~~~~~~~~~~~~~~~k~~~~~~~~vFG~pL~~ll~~----~~~VP~iL~~~i  188 (689)
                      .+.|..+.-...+.-       |.-..|+...    +-.....+........||||++..+-..    .+.||.++..+.
T Consensus       105 ~d~~~~~~~~f~~~~-------~~~~f~~~~~----e~q~~~~rrals~~~~vfgv~~~s~Q~s~~~~~n~vp~i~~l~~  173 (577)
T KOG4270|consen  105 TDQRHADHVTFDRKE-------GEYLFLGLPV----EFQPDYHRRALSASETVFGVSTEAMQLSYDPRGNFVPLILHLLQ  173 (577)
T ss_pred             cchhhhhhhhhhhhc-------chhhhccchh----hhccccccccccchhhhhcchHHhhhcccccCCCcchhhhHhhh
Confidence            233655544443311       1000233221    1111223444555678999999776543    334799999888


Q ss_pred             H-HHHh-cCCCcCCeeecCCCHHHHHHHHHHhhcCCccCCCCCCcccchhhHHHHhhhCCCCCCChhhHHHHHHHHhcCC
Q 005588          189 R-FLEK-FGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDR  266 (689)
Q Consensus       189 ~-~Le~-~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~Dvh~VAslLK~fLReLPePLlp~~ly~~~i~~~~~~~  266 (689)
                      . +|+. +|++.|||||++|...+++.++++||.|.+......|||+||++||.|||+||+|++++.+|++|+.+....+
T Consensus       174 ~~~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~~iDvH~~agllKayLRELPepvl~~nL~~e~~qv~~~~~  253 (577)
T KOG4270|consen  174 SGRLLLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQLYIDVHCLAGLLKAYLRELPEPVLTFNLYKEWTQVQNCEN  253 (577)
T ss_pred             hhhhhhhcCccccceeccCCCchHHHHHHHHHcCCcccccccCCHHHHHHHHHHHHHhCCCcCCCcccCHHHHHHHhccC
Confidence            8 6664 8999999999999999999999999999644333789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccCCCCCCCCccccccCCCCCchHH
Q 005588          267 KEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQ  346 (689)
Q Consensus       267 ~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~~~  346 (689)
                      .+++...++.++ .+||+.|+.+|+|+|+||+.|++++++||||++||||||||+|+|+..               ....
T Consensus       254 e~~~~q~lr~~~-~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~NlAiV~gPNl~~~~~---------------p~~~  317 (577)
T KOG4270|consen  254 EDEKVQLLRQCL-QKLPPTNYSLLRYLIRFLADVVEKEHVNKMSARNLAIVFGPNLLWMKD---------------PLTA  317 (577)
T ss_pred             HHHHHHHHHHHH-HhCCcchHHHHHHHHHHHHHHHHHhhhcccchhhceeEecCCccccCC---------------hHHH
Confidence            999999999955 799999999999999999999999999999999999999999999872               1233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccccCCCCCcc
Q 005588          347 LLAAANAANNAQAIIATLLEEYENIFDDESLH  378 (689)
Q Consensus       347 l~~~~~~~~~~~~iVe~LIen~~~IF~~~~~~  378 (689)
                      ++.+.+..+.+..+|+..|++++..|+...-.
T Consensus       318 l~~avqvs~~~~~lie~~l~~~~~~~~g~~~~  349 (577)
T KOG4270|consen  318 LMYAVQVSNFLKGLIEKTLEERDTSFPGELEF  349 (577)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCccccc
Confidence            44445555566677788888888888776643

>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]

Probab=99.97  E-value=2.6e-31  Score=289.71  Aligned_cols=209  Identities=24%  Similarity=0.333  Sum_probs=175.6

Q ss_pred             CCcccccchHHHhhhCC-CCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCc---cCCCCCCcccchhh
Q 005588          162 KSLVVGRPILLALEDID-GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT---EFSADEDAHVIGDC  237 (689)
Q Consensus       162 ~~~vFG~pL~~ll~~~~-~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~---~~~~~~Dvh~VAsl  237 (689)
                      .+.||||||..++++.+ .||.+|.++++||+++|++++||||++|...+|+.|++.++..-.   ..++....|+||++
T Consensus       297 d~~vFGVPL~vll~rtG~~lP~~iQq~m~~lr~~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~~~DvAdl  376 (674)
T KOG2200|consen  297 DGGVFGVPLTVLLQRTGQPLPLSIQQAMRYLRERGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQSAHDVADL  376 (674)
T ss_pred             CCceeecCceeeeccCCCcCcHHHHHHHHHHHHhCccccceeecccHHHHHHHHHHHHhhcccCcccccchhhhhHHHHH
Confidence            35799999999999744 599999999999999999999999999999999999999887432   23456779999999


Q ss_pred             HHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhh
Q 005588          238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC  317 (689)
Q Consensus       238 LK~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAiv  317 (689)
                      ||.|||+||+||||.++.+.|+.+++..+..+++.+++.+|+ .||.+||.+|+.|+.||.+|+.+.+.|+||+.|||+|
T Consensus       377 LKqffRdLPePL~t~k~~~aF~~i~~~~pkkqrlqAl~~ail-lLPDeNReaLktLL~FL~~V~an~e~N~MT~~Nlsvc  455 (674)
T KOG2200|consen  377 LKQFFRDLPEPLFTVKYSEAFAQIYQLVPKKQRLQALQLAIL-LLPDENREALKTLLEFLNDVIANEEENQMTLMNLSVC  455 (674)
T ss_pred             HHHHHHhCCcccchhhHHHHHHHHHhcCcHHHHHHHHHHHHH-hCCcccHHHHHHHHHHHHHHHHhHhhcccchhhhhhh
Confidence            999999999999999999999999999999999999999998 9999999999999999999999999999999999999


Q ss_pred             hcccccCCCCCCCCccccccCC-----CCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005588          318 MAPLLLRPLLAGECELEDDFDM-----NGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES  376 (689)
Q Consensus       318 faP~Llr~~~~~~~~le~~~~~-----~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~~~  376 (689)
                      |||+||........  ..+..+     .|...   ...+..+.-+..++..||.+++.+|.-+.
T Consensus       456 mAPsLF~l~~~~~d--~spr~~~~k~~~g~p~---~kel~~a~aaa~~l~~mI~y~k~Lf~VP~  514 (674)
T KOG2200|consen  456 MAPSLFHLNALKLD--SSPRVRQKKSETGKPD---QKELNEALAAAQGLAHMIKYQKLLFTVPS  514 (674)
T ss_pred             hcchHHhhccCCCC--CCccccccccccCCCc---hHHHHHHHHHHHHHHHHHHHHHHHhhchH
Confidence            99999986532211  000000     01110   11233444567899999999999998765

>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins

Probab=99.97  E-value=1.6e-30  Score=264.95  Aligned_cols=142  Identities=18%  Similarity=0.283  Sum_probs=128.2

Q ss_pred             CCcHHHHHHHHHHHhcCCCcCCeeecCCCHHH----HHHHHHHhhcCCccCCCCCCcccchhhHHHHhhhCCCCCCChhh
Q 005588          179 GGPSFLEKALRFLEKFGTKVEGILRQAADVEE----VDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRELPSSPVPASC  254 (689)
Q Consensus       179 ~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~----v~~L~~~ld~g~~~~~~~~Dvh~VAslLK~fLReLPePLlp~~l  254 (689)
                      .||.+|.+|++||+++|+.+|||||++|+...    ++++++.+|+|.... ...|+|+||++||.|||+||+||||+++
T Consensus        49 ~iP~~l~~~i~~L~~~gl~~eGiFR~~G~~~~~~~~i~~l~~~ld~~~~~~-~~~~~~~va~~LK~fLr~LpePlip~~~  127 (220)
T cd04380          49 SIPKEIWRLVDYLYTRGLAQEGLFEEPGLPSEPGELLAEIRDALDTGSPFN-SPGSAESVAEALLLFLESLPDPIIPYSL  127 (220)
T ss_pred             ccCHHHHHHHHHHHHcCCcccCcccCCCcccchHHHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhCCCCccCHHH
Confidence            48999999999999999999999999999999    999999999985433 6789999999999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhc-cCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccCCCC
Q 005588          255 CTALLEAYKIDRKEARISAMRSAILE-TFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLL  327 (689)
Q Consensus       255 y~~~i~~~~~~~~e~ri~~l~~lIl~-~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr~~~  327 (689)
                      |+.|+++... +.    ..++. +++ +||+.|+.+|.||+.||++|+.+++.|+|++.|||+||||+|+|++.
T Consensus       128 y~~~~~~~~~-~~----~~~~~-ll~~~LP~~n~~~l~~L~~fL~~v~~~~~~nkM~~~nLA~vF~P~Llr~~~  195 (220)
T cd04380         128 YERLLEAVAN-NE----EDKRQ-VIRISLPPVHRNVFVYLCSFLRELLSESADRGLDENTLATIFGRVLLRDPP  195 (220)
T ss_pred             HHHHHHHhcC-cH----HHHHH-HHHhhCCHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHhHHHhcchhccCCc
Confidence            9999998622 21    23455 346 99999999999999999999999999999999999999999999884

OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas

>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases

Probab=99.97  E-value=9.8e-30  Score=246.37  Aligned_cols=168  Identities=31%  Similarity=0.529  Sum_probs=152.3

Q ss_pred             cHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCcc-CCCCCCcccchhhHHHHhhhCCCCCCChhhHHHHH
Q 005588          181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE-FSADEDAHVIGDCVKHVLRELPSSPVPASCCTALL  259 (689)
Q Consensus       181 P~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~-~~~~~Dvh~VAslLK~fLReLPePLlp~~ly~~~i  259 (689)
                      |.+|.+|+.||+++|+.++||||++|+..+++++++.++.|... .....|+|++|++||.|||+||+||||.+.|+.|+
T Consensus         1 P~~l~~~~~~l~~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~~   80 (169)
T cd00159           1 PLIIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDIDDLEDYDVHDVASLLKLYLRELPEPLIPFELYDEFI   80 (169)
T ss_pred             ChHHHHHHHHHHHcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHcCCCccCCHHHHHHHH
Confidence            88999999999999999999999999999999999999999754 56788999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccCCCCCCCCccccccCC
Q 005588          260 EAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDM  339 (689)
Q Consensus       260 ~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr~~~~~~~~le~~~~~  339 (689)
                      .+....+...++..++.++ ..||+.|+.+|.+|+.||++|+.+++.|+|++.|||+||||+|++++..+          
T Consensus        81 ~~~~~~~~~~~~~~~~~~i-~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~----------  149 (169)
T cd00159          81 ELAKIEDEEERIEALKELL-KSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSD----------  149 (169)
T ss_pred             HHHHcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCcc----------
Confidence            9999888899999999976 59999999999999999999999999999999999999999999987321          


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 005588          340 NGDNSAQLLAAANAANNAQAIIATLLEE  367 (689)
Q Consensus       340 ~g~~~~~l~~~~~~~~~~~~iVe~LIen  367 (689)
                              ............+|++||.|
T Consensus       150 --------~~~~~~~~~~~~~~~~li~~  169 (169)
T cd00159         150 --------DELLEDIKKLNEIVEFLIEN  169 (169)
T ss_pred             --------HHHHHHhHHHHHHHHHHHhC
Confidence                    11233455678899999975

Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.

>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]

Probab=99.96  E-value=4.3e-30  Score=288.97  Aligned_cols=186  Identities=21%  Similarity=0.379  Sum_probs=164.0

Q ss_pred             CCCCCcccccchHHHhh-----hCCCCcHHHHHHHHHHH-hcCCCcCCeeecCCCHHHHHHHHHHhhcC-Ccc---CCCC
Q 005588          159 RPVKSLVVGRPILLALE-----DIDGGPSFLEKALRFLE-KFGTKVEGILRQAADVEEVDRRVQEYEQG-KTE---FSAD  228 (689)
Q Consensus       159 ~~~~~~vFG~pL~~ll~-----~~~~VP~iL~~~i~~Le-~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g-~~~---~~~~  228 (689)
                      ...++.|||.|+..-+.     ...++|.+|.+|++||+ .+|++.|||||++|.+..|+.|++.||.+ ..+   ...+
T Consensus       893 ~~~qTgIFG~~~~~kisv~t~~n~s~lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~E  972 (1112)
T KOG4269|consen  893 SVKQTGIFGLPLNVKISVVTKRNVSGLPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMDSE  972 (1112)
T ss_pred             cceeceeccccceeeEeeeeeecccCCchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccccCchhhhcccc
Confidence            34468899987744332     23479999999999999 59999999999999999999999999998 322   2456


Q ss_pred             CCcccchhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCC
Q 005588          229 EDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENR  308 (689)
Q Consensus       229 ~Dvh~VAslLK~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~Nk  308 (689)
                      .|||+|||+||+|||+||+|||+.++|..|.......+...+...+..+| ..||++|+.+|.+|+.||.+|+.++.+||
T Consensus       973 ~dVn~IaGlLKLYlR~LP~~Ll~de~~~~F~~~i~~~npva~~~~~~~li-~slP~aNl~l~~~LlehL~RI~e~ekvNK 1051 (1112)
T KOG4269|consen  973 MDVNAIAGLLKLYLRELPEPLLTDEMYPLFEEGIALSNPVAKEGCMCDLI-SSLPPANLALFLFLLEHLKRIAEKEKVNK 1051 (1112)
T ss_pred             ccHHHHHHHHHHHHHhCCccccchhhhHHHHhhccCCCHHHHHhhHHHHH-HhCCChhHHHHHHHHHHHHHHHhhccccc
Confidence            79999999999999999999999999999999999999999999999977 48999999999999999999999999999


Q ss_pred             CCccchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCc
Q 005588          309 MTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESL  377 (689)
Q Consensus       309 Mta~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~~~~  377 (689)
                      |+++||||||+|+|.+|.                                .+...+|.+|+.||.+-..
T Consensus      1052 MnlrNlciVFsPTLniPs--------------------------------e~~~~li~n~d~if~dv~~ 1088 (1112)
T KOG4269|consen 1052 MNLRNLCIVFSPTLNIPS--------------------------------EIESKLILNYDHIFTDVMR 1088 (1112)
T ss_pred             ccccceeeeecccccCcH--------------------------------HhhhhhccchhhhhccchH
Confidence            999999999999999986                                2356678889999988653

>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]

Probab=99.96  E-value=3.7e-29  Score=264.78  Aligned_cols=202  Identities=24%  Similarity=0.338  Sum_probs=175.8

Q ss_pred             CCCCCCCcccccchHHHhhh---CCCCcHHHHHHHHHHHhcC-CCcCCeeecCCCHHHHHHHHHHhhcCCccCCCC-CCc
Q 005588          157 DKRPVKSLVVGRPILLALED---IDGGPSFLEKALRFLEKFG-TKVEGILRQAADVEEVDRRVQEYEQGKTEFSAD-EDA  231 (689)
Q Consensus       157 ~~~~~~~~vFG~pL~~ll~~---~~~VP~iL~~~i~~Le~~G-l~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~-~Dv  231 (689)
                      .+.+++++.||+||..+.+.   +..+|.+|..|+.+|..+| +.+|||||++++...+.++.+.+++|..+..+. -|+
T Consensus       245 pr~pl~t~qFgvpLqf~~~~~~e~~~iPpiv~~tV~~L~~~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~pVdle~~~~~  324 (467)
T KOG4406|consen  245 PRPPLPTQQFGVPLQFIPEKNPEGESIPPIVRSTVEYLQAHGKLTTEGLFRRSASRSPIREVQELYNTGEPVDLEVYKDL  324 (467)
T ss_pred             CCCCCchhhcCccHHHhcccCcccCCCCcHHHHHhhhhhccceecccceeccccCccchHHHHHHhcCCCcccHHHhccc
Confidence            35678899999999888765   4679999999999999999 999999999999999999999999997554444 459


Q ss_pred             ccchhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCc
Q 005588          232 HVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTP  311 (689)
Q Consensus       232 h~VAslLK~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta  311 (689)
                      |..|.+||.|||+||+||+++++|..+...... +...+...+++++-.+||+.|+.++++++.||.+|+.|+..|+||+
T Consensus       325 h~~avllKtF~R~LpePL~t~~~y~~lt~~~~~-~~~~~s~s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M~~  403 (467)
T KOG4406|consen  325 HAPAVLLKTFLRSLPEPLLTFRLYESLTGFSNV-DKSLRSSSTDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKMTA  403 (467)
T ss_pred             hhhHHHHHHHHhcCCcccchhhhhhhhhccccc-hHHhhhhHHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhhcc
Confidence            999999999999999999999999988776554 3477888899988667999999999999999999999999999999


Q ss_pred             cchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcc
Q 005588          312 SAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESLH  378 (689)
Q Consensus       312 ~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~~~~~  378 (689)
                      .|||+||||+|+|+.....                   .+.+.+.++.++++||+||..||..+...
T Consensus       404 sNLa~vfGpnl~w~~~~s~-------------------tl~q~npin~F~~~li~~~~~~f~~~~~~  451 (467)
T KOG4406|consen  404 SNLAVVFGPNLLWAQDESL-------------------TLKQINPINKFTKFLIEHYKKLFTTPENA  451 (467)
T ss_pred             ccceeeecccccccccccc-------------------cHHHhccHHHHHHHHHHhhhhccCCCCCc
Confidence            9999999999999873211                   12345678999999999999999988743

>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation

Probab=99.96  E-value=3.6e-29  Score=238.90  Aligned_cols=145  Identities=30%  Similarity=0.529  Sum_probs=136.3

Q ss_pred             cHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCcc--CCCCCCcccchhhHHHHhhhCCCCCCChhhHHHH
Q 005588          181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE--FSADEDAHVIGDCVKHVLRELPSSPVPASCCTAL  258 (689)
Q Consensus       181 P~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~--~~~~~Dvh~VAslLK~fLReLPePLlp~~ly~~~  258 (689)
                      |.+|..|+.||+++|+.++||||++|+..+++++++.++.|...  .....|+|+||++||.||++||+||+|.++|+.|
T Consensus         1 P~~l~~~~~~l~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~~   80 (151)
T PF00620_consen    1 PRILNDCVDYLEKKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSELYDKF   80 (151)
T ss_dssp             EHHHHHHHHHHHHHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhhHHHHH
Confidence            88999999999999999999999999999999999999999755  6788999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccCCC
Q 005588          259 LEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL  326 (689)
Q Consensus       259 i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr~~  326 (689)
                      +.+.+..+..+++..++.++ .+||+.|+.+|.+|+.||+.|+.+++.|+||+.|||+||||+|++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~l-~~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~  147 (151)
T PF00620_consen   81 IAASKSADEEEQIEAIRSLL-QSLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPP  147 (151)
T ss_dssp             HHHHTSSSHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGS
T ss_pred             hhhhccchhhHHHHHHHHhh-hccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCC
Confidence            99888889999999999966 69999999999999999999999999999999999999999999987

Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....

>KOG2710 consensus Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]

Probab=99.95  E-value=1.2e-27  Score=258.58  Aligned_cols=206  Identities=21%  Similarity=0.382  Sum_probs=170.1

Q ss_pred             CCCCcccccchHHHhhh-------------CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcC-----
Q 005588          160 PVKSLVVGRPILLALED-------------IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-----  221 (689)
Q Consensus       160 ~~~~~vFG~pL~~ll~~-------------~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g-----  221 (689)
                      .....+||+++...+..             ...||.+|.+|+.||.++|+.+.||||++|+.++|++|.+.|+++     
T Consensus        61 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~IP~vv~~c~~~lk~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~  140 (412)
T KOG2710|consen   61 VLDGLLLKVPLELSSKVASAETRLQSLNPGEGQIPRVVAKCGQYLKKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGI  140 (412)
T ss_pred             ccceeeeccchhhhhhhhhccchhccCCccceeCcHHHHHHHHHHHHcCceeeeeeecCCchHHHHHHHHHhccCccccc
Confidence            34456777777555432             134899999999999999999999999999999999999999997     


Q ss_pred             CccCCCCCCcccchhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhh
Q 005588          222 KTEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTIS  301 (689)
Q Consensus       222 ~~~~~~~~Dvh~VAslLK~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va  301 (689)
                      +...++.+++|+||++||.|||+||+||||.++|+.|+..+....+.+++..++.++. .||+.|+.+|.+|+.||+.|+
T Consensus       141 ~~~~~e~~nvHDvAaLLK~flr~lp~pLLP~~LY~~f~~p~kl~~e~e~~~~l~l~~~-llp~~nr~~l~~ll~fL~~~a  219 (412)
T KOG2710|consen  141 DVNDWEDFNVHDVAALLKEFLRDLPDPLLPLELYESFINPAKLEPETEQLGVLQLLIY-LLPKCNRDTLEVLLGFLSVVA  219 (412)
T ss_pred             cccccccccHHHHHHHHHHHHHhCCcccCCHHHHHHHhhhhcCCcHHHHHHHHHHHHH-hcCccchhHHHHHHhhhhhhh
Confidence            3556678899999999999999999999999999999999999988899999998775 999999999999999999999


Q ss_pred             cccCCC-----------CCCccchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccc
Q 005588          302 SHAHEN-----------RMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYEN  370 (689)
Q Consensus       302 ~~s~~N-----------kMta~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~  370 (689)
                      .|++.|           +|++.|||+||+|+|+.......    ...++.+-.      .......+..++++||+||+.
T Consensus       220 ~~s~d~~~kdg~~~~gnkm~~~nlatIf~P~iL~k~~~~~----~~~s~~~~~------~~s~~~~i~~~~~~~~~N~e~  289 (412)
T KOG2710|consen  220 SHAEDNIGKDGQEVNGNKMTSENLATIFGPNILYKLKGSH----KELSVTGVA------NESESEAIVNFAQMMIENLEA  289 (412)
T ss_pred             cccccccccccccccCcccchhhhhhhhcchhhhcccCCC----ccccccccc------chhhHHHHHHHHHHhhhhHHH
Confidence            999999           99999999999999999532111    111111111      011223467889999999999


Q ss_pred             cCCCCC
Q 005588          371 IFDDES  376 (689)
Q Consensus       371 IF~~~~  376 (689)
                      +|..++
T Consensus       290 ~f~ip~  295 (412)
T KOG2710|consen  290 LFQIPP  295 (412)
T ss_pred             hhcCCc
Confidence            999554

>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=99.94  E-value=1e-27  Score=264.44  Aligned_cols=241  Identities=18%  Similarity=0.186  Sum_probs=215.6

Q ss_pred             CCCCCcccccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCccCCCCCCcccchhhH
Q 005588          159 RPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV  238 (689)
Q Consensus       159 ~~~~~~vFG~pL~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~Dvh~VAslL  238 (689)
                      .+.++.+||.||..+|.+.+ +|..+..++-+|...|.-++||||..++.+.++++++.++.|..+-.....+|++|.++
T Consensus        76 ~~~~~~Lfg~pl~nic~~~~-lp~p~~d~l~~lc~kgp~t~giFr~~anek~~relKe~lnsgv~v~l~~~~i~v~a~v~  154 (741)
T KOG4724|consen   76 NTADSFLFGWPLTNICVHFR-LPEPDEDFLLLLCCKGPCTRGIFRTIANEKNVRELKETLNSGVDVGLKSGEIVVDAAVD  154 (741)
T ss_pred             CCCCccccCccchhhcccCC-CCChHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHhcccccccccccceEEeehhh
Confidence            45678899999999999977 99999999999999999999999999999999999999999977777788999999999


Q ss_pred             HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhh
Q 005588          239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM  318 (689)
Q Consensus       239 K~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivf  318 (689)
                      |.|||.+|..+|...+|+.|+-+....+.+++|.+|+++. .+||..|..+|++|+..| .|..++..|.|+..|||+|+
T Consensus       155 kdflr~ip~~~lSsdl~~hw~~~~~~~~~e~~i~~i~r~~-d~Lpr~n~~lL~~l~~vl-~i~~~S~~n~m~~~nla~cv  232 (741)
T KOG4724|consen  155 KDFLRTIPQLTLSSDLNSHWQLQGPENVYEAIISEIERQG-DRLPRSNKQLLDTLPIVL-CILILSTINSMSGPNLAQCV  232 (741)
T ss_pred             hchhhhchhhhhccccHHHHhhccccccHHHHHHHHHHHH-hhCCchHHHHHHHhHHHH-HHHHhhhhccccCccHHHHh
Confidence            9999999999999999999999999999999999999955 799999999999999999 99999999999999999999


Q ss_pred             cccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCCCCc
Q 005588          319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESLHRCSISADSHVDNSGSEDSSD  398 (689)
Q Consensus       319 aP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~~~~~~~~~s~~~~~~~s~~e~ssd  398 (689)
                      +|+++++......+++..++                +++.-+++|||+||-.|||++....   +..++......|+.+|
T Consensus       233 ~p~~l~~~~~~s~e~~k~ln----------------~kv~~l~~flI~nclrifGe~i~~~---fr~~s~~s~~~e~~sd  293 (741)
T KOG4724|consen  233 NPIKLKVLTRTSSEFGKGLN----------------GKVPPLPIFLIVNCLRIFGEDIEGI---FRKSSKQSTFKELKSD  293 (741)
T ss_pred             cchhcccccccChhhhcccc----------------CCCCCceeeehhhhHHhhcccccce---eecccccccchhhhhh
Confidence            99999998765555544332                2355679999999999999999654   4455667778899999


Q ss_pred             cccccccCCCCCCCCCCCCCCCCC
Q 005588          399 EENLDMKNNGYHDAQNEVDPESDD  422 (689)
Q Consensus       399 ~~~~~~~d~s~~s~e~e~~~~~d~  422 (689)
                      -+.++. |+.||+.+++++.+.|.
T Consensus       294 ~s~~q~-Ds~yds~~~~~~~~~~~  316 (741)
T KOG4724|consen  294 LSKGQV-DSHYDSTHVLASILKEY  316 (741)
T ss_pred             hccccc-cccccccchhhhhhhhh
Confidence            999998 99999999988876654

>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]

Probab=99.91  E-value=8.3e-25  Score=261.57  Aligned_cols=162  Identities=26%  Similarity=0.430  Sum_probs=150.2

Q ss_pred             ccccchHHHhh-hCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCC-ccCCCCCCcccchhhHHHHh
Q 005588          165 VVGRPILLALE-DIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVL  242 (689)
Q Consensus       165 vFG~pL~~ll~-~~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~Dvh~VAslLK~fL  242 (689)
                      .||+.|..++. ....||.++.+|+.+|+.+|+.+|||||++|...+++.|...|+.|. .+.....|+|+|++|||.||
T Consensus       602 ~fG~~l~~~~~~e~~~vP~i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~dih~vtsVlK~yL  681 (918)
T KOG1453|consen  602 LFGVSLSELARYEPSTVPFILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTPDIHAVTSVLKLYL  681 (918)
T ss_pred             cccHHHHHhhccCCCCCCHHHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCCChHHHHHHHHHHH
Confidence            99999999998 56689999999999999999999999999999999999999999986 56667899999999999999


Q ss_pred             hhCCCCCCChhhHHHHHHHHhcCCHH------HHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhh
Q 005588          243 RELPSSPVPASCCTALLEAYKIDRKE------ARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAA  316 (689)
Q Consensus       243 ReLPePLlp~~ly~~~i~~~~~~~~e------~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAi  316 (689)
                      |+||+|||++.+|+.|+.+.+.....      +++..+..++ ..||+.|+.+|++|+.||.+|+.+++.|+|++.|||+
T Consensus       682 r~Lp~pIi~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~nlai  760 (918)
T KOG1453|consen  682 RKLPEPIIIFNLYDEFLSAAKLPEKDEPSRSTEPLRKLKEVL-EQLPRAHYEVLRRLIAHLKRVARYEDVNRMTPKNLAI  760 (918)
T ss_pred             HhccccccccchHHHHHhhhccccccccccccccchhHHHHH-HhcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCCCccc
Confidence            99999999999999999998883333      4888899865 6999999999999999999999999999999999999


Q ss_pred             hhcccccCCCC
Q 005588          317 CMAPLLLRPLL  327 (689)
Q Consensus       317 vfaP~Llr~~~  327 (689)
                      ||||+|+|++.
T Consensus       761 vF~Ptllr~~d  771 (918)
T KOG1453|consen  761 VFAPTLLRPPD  771 (918)
T ss_pred             cccCcccCCCC
Confidence            99999999984

>KOG3564 consensus GTPase-activating protein [General function prediction only]

Probab=99.90  E-value=1.7e-23  Score=223.85  Aligned_cols=181  Identities=22%  Similarity=0.347  Sum_probs=153.5

Q ss_pred             CCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCC-ccCCCCCCcccchhhHHHHhhhCCCCCCChhhHHH
Q 005588          179 GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTA  257 (689)
Q Consensus       179 ~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~Dvh~VAslLK~fLReLPePLlp~~ly~~  257 (689)
                      -||.+|..|+..|+.+|+.++||||++|....+++|+..|-+|+ .......|+|+||++||.|||+|.+||||+.+..+
T Consensus       361 MIPalVVHCVneIEaRGLteeGLYRvsg~~rtvk~lkekfLR~Kt~p~~g~~Dihvic~~lKdFLR~LkePLip~~~~rd  440 (604)
T KOG3564|consen  361 MIPALVVHCVNEIEARGLTEEGLYRVSGCDRTVKRLKEKFLRGKTTPHLGNDDIHVICCCLKDFLRNLKEPLIPFRLRRD  440 (604)
T ss_pred             cchHHHHHHHHHHHHccccccceeeccccHHHHHHHHHHHhccCCCCccCCcchhHHHHHHHHHHHhcccccccchHHHH
Confidence            48999999999999999999999999999999999999999997 44556789999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccCCCCCCCCcccccc
Q 005588          258 LLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDF  337 (689)
Q Consensus       258 ~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr~~~~~~~~le~~~  337 (689)
                      |+++....+...-+.++-..|. .||..||.+|.|||-|+++||+ +..|||+..|||.+|||+++..+..++    +  
T Consensus       441 f~eAa~~tD~dn~~~aly~aV~-ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~nlA~ifgPtivgh~vp~p----d--  512 (604)
T KOG3564|consen  441 FMEAAEITDEDNSILALYQAVG-ELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVANLARIFGPTIVGHAVPNP----D--  512 (604)
T ss_pred             HHHHhcCCCchhHHHHHHHHHH-hhhhcchhHHHHHHHHHHHHHh-CCcccccHHHHHHHhcchhhccCCCCc----c--
Confidence            9999999998888888888786 8999999999999999999998 889999999999999999998653221    0  


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHH----HhccccCCCCC
Q 005588          338 DMNGDNSAQLLAAANAANNAQAIIATLL----EEYENIFDDES  376 (689)
Q Consensus       338 ~~~g~~~~~l~~~~~~~~~~~~iVe~LI----en~~~IF~~~~  376 (689)
                               ...+......+.++|+.|+    ++|.++.+-++
T Consensus       513 ---------~~~~l~dv~~q~rvmkaLlelp~~yWsqfl~v~~  546 (604)
T KOG3564|consen  513 ---------QVTMLQDVKTQPRVMKALLELPLEYWSQFLGVEP  546 (604)
T ss_pred             ---------HhHHHHhhhhhHHHHHHHHhCCHHHHHHhhcccc
Confidence                     1223444455556666665    45555555444

>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]

Probab=99.76  E-value=8.2e-19  Score=199.72  Aligned_cols=161  Identities=23%  Similarity=0.398  Sum_probs=147.6

Q ss_pred             CCcccccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcC-CccC-CCCCCcccchhhHH
Q 005588          162 KSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEF-SADEDAHVIGDCVK  239 (689)
Q Consensus       162 ~~~vFG~pL~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g-~~~~-~~~~Dvh~VAslLK  239 (689)
                      ....||+||..+......||.++++|+.||++.|+.+|||||++|+......++++|.+. ..+. .-+..+|+||+.+|
T Consensus       914 ~s~~~~~~l~~~~t~~k~ip~~~ekc~sfiedtg~~te~lyrv~gnkT~~eelrkqf~n~~~~dl~s~d~~v~~vagAlk  993 (1100)
T KOG4271|consen  914 ESNYFLTPLQDAVTSEKPIPIFLEKCKSFIEDTGLSTEGLYRVSGNKTDLEELRKQFLNDHNFDLSSMDTTVNVVAGALK  993 (1100)
T ss_pred             hhhccCCcccccccCCcccchHHHHHHHHHHhccchhhhheecCCCCccHHHHHHHHHhhccccccccccccccccCcch
Confidence            457999999888888889999999999999999999999999999999999999999873 3332 23567999999999


Q ss_pred             HHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhc
Q 005588          240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMA  319 (689)
Q Consensus       240 ~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfa  319 (689)
                      .||..||+||+|+.+...|.+++.+.+...++..++..+ ..||+.|+.+++|++.||.+|+....+|.||..||+|||+
T Consensus       994 sffa~Lpeplipys~h~~~~e~~kI~D~~rklhglr~~~-a~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~~i~~~ 1072 (1100)
T KOG4271|consen  994 SFFACLPEPLIPYSYHPRLKEAMKISDRGRKLHGLREAS-AKLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNLSICFP 1072 (1100)
T ss_pred             hhhhhCCCcccCccCCcchhhhhhcccchhhccchhhHh-hhcCchHHHHHHHHHHHHhhhccccccccccccccccccc
Confidence            999999999999999999999999999999999999866 6999999999999999999999999999999999999998


Q ss_pred             cccc
Q 005588          320 PLLL  323 (689)
Q Consensus       320 P~Ll  323 (689)
                      |.|+
T Consensus      1073 ~~~~ 1076 (1100)
T KOG4271|consen 1073 TLLM 1076 (1100)
T ss_pred             chHH
Confidence            8776

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=99.72  E-value=1.8e-17  Score=170.42  Aligned_cols=163  Identities=21%  Similarity=0.273  Sum_probs=137.8

Q ss_pred             cccccchHHHhhhC-CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCccC--C--CCCCcccchhhH
Q 005588          164 LVVGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF--S--ADEDAHVIGDCV  238 (689)
Q Consensus       164 ~vFG~pL~~ll~~~-~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~--~--~~~Dvh~VAslL  238 (689)
                      .+||.+|+.++++. ..-|+++.+|+..|+++|++.-|+|+++|++.+-+-|+..|+...-.+  -  ..-|.++|++++
T Consensus       183 gvfG~~L~~lV~RE~~~~PIvlrR~~~EiEkRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E~iPD~nvItg~~  262 (442)
T KOG1452|consen  183 GVFGISLSRLVQREPESPPIVLRRLYAEIEKRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAESIPDYNVITGDS  262 (442)
T ss_pred             cccchhhHhHhhcCCCCCchHHHHHHHHHHhcccccccceeeechhhHHHHHHHHhccCCcccccccccCCCcceeeccc
Confidence            49999999999874 568999999999999999999999999999999999999998864222  2  235889999999


Q ss_pred             HHHhhhCCCCCCChhhHHHHHHHHhc---CCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchh
Q 005588          239 KHVLRELPSSPVPASCCTALLEAYKI---DRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA  315 (689)
Q Consensus       239 K~fLReLPePLlp~~ly~~~i~~~~~---~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLA  315 (689)
                      |.||||||+|||+...|+..++++..   .+.+-....+-. |+.-||..++..|..++.||..|..++..|+||+..||
T Consensus       263 kD~lrElpEPl~t~~~f~m~~dA~sV~LP~dp~~N~kl~l~-iidcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt~~~Ls  341 (442)
T KOG1452|consen  263 KDELRELPEPLVTGQDFEMDFDAASVALPFDPHLNLKLFLA-IIDCLERELSKQLNVCLDHLSTVLCSSPHNGLTPTRLS  341 (442)
T ss_pred             HhHHHhCCCccccchhhhhhhhhhhhcCCCCccccHHHHHH-HHHHHHHHhhhhHhHHHhhhhHheecCCcCCcCHHHHH
Confidence            99999999999999999888877542   222333334444 34589999999999999999999999999999999999


Q ss_pred             hhhcccccCCCC
Q 005588          316 ACMAPLLLRPLL  327 (689)
Q Consensus       316 ivfaP~Llr~~~  327 (689)
                      .||||.||....
T Consensus       342 ~i~~P~L~~~~~  353 (442)
T KOG1452|consen  342 LIFAPLLFFCLD  353 (442)
T ss_pred             HHhhhhHHHhhc
Confidence            999999987653

>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain

Probab=99.71  E-value=7.6e-17  Score=144.70  Aligned_cols=92  Identities=18%  Similarity=0.320  Sum_probs=71.9

Q ss_pred             eEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc-----CCcceEEE
Q 005588           19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE-----DKKLLTVL   93 (689)
Q Consensus        19 V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~-----~kk~~FvI   93 (689)
                      |+|+|||+  |+|+..++|++|||||+++.|+||+++.+..         +.+.|+|..+.......     .++++|.|
T Consensus         2 v~k~G~L~--Kkg~~~k~WkkRwfvL~~~~L~yyk~~~~~~---------~~~~I~L~~~~v~~~~~~~~~~~~~~~F~I   70 (100)
T cd01233           2 VSKKGYLN--FPEETNSGWTRRFVVVRRPYLHIYRSDKDPV---------ERGVINLSTARVEHSEDQAAMVKGPNTFAV   70 (100)
T ss_pred             cceeEEEE--eeCCCCCCcEEEEEEEECCEEEEEccCCCcc---------EeeEEEecccEEEEccchhhhcCCCcEEEE
Confidence            78999665  8888889999999999999999999987755         45556666432221111     24577877


Q ss_pred             EeCCCCCcEEEEEecChHHHHHHHHHHHHHH
Q 005588           94 FPDGRDGRAFTLKAETSEDLYEWKTALELAL  124 (689)
Q Consensus        94 ~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai  124 (689)
                      .+   +.|+|+|+|+|++|+.+||.+|+..+
T Consensus        71 ~t---~~rt~~~~A~s~~e~~~Wi~ai~~~~   98 (100)
T cd01233          71 CT---KHRGYLFQALSDKEMIDWLYALNPLY   98 (100)
T ss_pred             EC---CCCEEEEEcCCHHHHHHHHHHhhhhh
Confidence            54   47999999999999999999998765

Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.

>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins

Probab=99.68  E-value=2.7e-16  Score=158.52  Aligned_cols=185  Identities=16%  Similarity=0.200  Sum_probs=143.6

Q ss_pred             cccccchHHHhhh-CCCCcHHHHHHH--HHHHhcCCCc--CCeeecCCCHHHHHHHHHHhhcCCc--cCCCCCCcc----
Q 005588          164 LVVGRPILLALED-IDGGPSFLEKAL--RFLEKFGTKV--EGILRQAADVEEVDRRVQEYEQGKT--EFSADEDAH----  232 (689)
Q Consensus       164 ~vFG~pL~~ll~~-~~~VP~iL~~~i--~~Le~~Gl~~--EGIFR~sG~~~~v~~L~~~ld~g~~--~~~~~~Dvh----  232 (689)
                      ++||+|+.+-+.+ ....|..+....  +++..+.++.  -|+||+++-..-+...++.++.-..  ........+    
T Consensus        20 ~l~glp~Ld~vl~~~~~~p~~i~~~~~~~~~~~~~ldr~vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~~~   99 (235)
T cd04405          20 QLVGLPLLEELLDPALVNPKHISYNMDPDVYTSNYLDREVVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQHD   99 (235)
T ss_pred             HHcCCccHHHHhcccCCCCcchhhcccccccccccccchhhcccccccCcHHHHHHHHHHHhCCcccccccccccccccc
Confidence            4899998655544 444677776555  5555554444  6999999988889899888876421  111111112    


Q ss_pred             -------cchhhHHHHhhhCCCCCCChhhHHHHHHHHh---cCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhc
Q 005588          233 -------VIGDCVKHVLRELPSSPVPASCCTALLEAYK---IDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISS  302 (689)
Q Consensus       233 -------~VAslLK~fLReLPePLlp~~ly~~~i~~~~---~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~  302 (689)
                             +||.+++.||++||+||+|..+|+.|+.++.   ....+..+++++.+++ .||++||..|+.|+.||+.|+.
T Consensus       100 ~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~ll~~~~~e~aleAlQl~~l-LLP~enRe~Lq~LL~fl~~va~  178 (235)
T cd04405         100 MLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILELLGNGKEEVALEALQLCLL-LLPPASRRELRRLLRFMARAAK  178 (235)
T ss_pred             cccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHhcCccHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHh
Confidence                   8999999999999999999999998888876   3447899999998876 9999999999999999999999


Q ss_pred             cc-------CCCCCCccchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 005588          303 HA-------HENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE  375 (689)
Q Consensus       303 ~s-------~~NkMta~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~~  375 (689)
                      +.       ..|+|   |++..|+|++++++.     +.                   ..++..+|.|||+|+..||.-+
T Consensus       179 ~~~~~L~~~~~nR~---~v~~~Fs~~ii~~~~-----l~-------------------~~~~~~LV~Fmmd~~~~ifkvP  231 (235)
T cd04405         179 NDMPRLHKEIENRM---LVKQTFSRAILCSKD-----LD-------------------EGLADLLVLFLMDHHQDIFKVP  231 (235)
T ss_pred             cCccccccccchHH---HHHHHhhhHhcCccc-----cC-------------------HHHHHHHHHHHHHcchhhhcCC
Confidence            94       25777   999999999999872     11                   1235689999999999999865


Q ss_pred             C
Q 005588          376 S  376 (689)
Q Consensus       376 ~  376 (689)
                      .
T Consensus       232 ~  232 (235)
T cd04405         232 G  232 (235)
T ss_pred             c
Confidence            4

This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain

Probab=99.68  E-value=2.3e-16  Score=142.43  Aligned_cols=91  Identities=29%  Similarity=0.472  Sum_probs=67.6

Q ss_pred             EEEeeeeeecCCC-CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcc---eee------ccCCcce
Q 005588           21 KSGPLFISSKGIG-WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS---VVV------REDKKLL   90 (689)
Q Consensus        21 KeG~L~l~KkG~~-~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~s---v~~------~~~kk~~   90 (689)
                      |+|||  .|+|+. .++|++|||||+++.|+||+++.+..|.         |.|+|..+..   |..      .....++
T Consensus         1 KeG~L--~K~g~~~~k~wkkRwFvL~~~~L~Yyk~~~d~~~~---------G~I~L~~~~~~~~v~~~~~~~~~~~~~~~   69 (103)
T cd01251           1 KEGFM--EKTGPKHTEGFKKRWFTLDDRRLMYFKDPLDAFAK---------GEVFLGSQEDGYEVREGLPPGTQGNHWYG   69 (103)
T ss_pred             CceeE--EecCCCCCCCceeEEEEEeCCEEEEECCCCCcCcC---------cEEEeeccccceeEeccCCccccccccce
Confidence            68955  588875 6999999999999999999998876643         3444443221   110      1122236


Q ss_pred             EEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHHh
Q 005588           91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA  125 (689)
Q Consensus        91 FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~  125 (689)
                      |.|..   ++|+|+|+|+|++|+.+||+||+.++.
T Consensus        70 F~i~t---~~Rty~l~a~s~~e~~~Wi~ai~~v~~  101 (103)
T cd01251          70 VTLVT---PERKFLFACETEQDRREWIAAFQNVLS  101 (103)
T ss_pred             EEEEe---CCeEEEEECCCHHHHHHHHHHHHHHhc
Confidence            76654   389999999999999999999999985

Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici

>cd01264 PH_melted Melted pleckstrin homology (PH) domain

Probab=99.66  E-value=3.8e-16  Score=139.88  Aligned_cols=91  Identities=27%  Similarity=0.402  Sum_probs=73.8

Q ss_pred             EEEeeeeeecCC---CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC------CcceE
Q 005588           21 KSGPLFISSKGI---GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED------KKLLT   91 (689)
Q Consensus        21 KeG~L~l~KkG~---~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~------kk~~F   91 (689)
                      .+|  |+.|+|+   .+|+|++|||+|+++.|+|||+...+.|        ..+.|+|+.+.+|....+      +++||
T Consensus         2 ~~G--~l~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~~~~--------~~g~IdL~~~~sVk~~~~~~~~~~~~~~F   71 (101)
T cd01264           2 IEG--QLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDP--------DDCSIDLSKIRSVKAVAKKRRDRSLPKAF   71 (101)
T ss_pred             cce--EEeecCccceeeecceeEEEEEeCCEEEEEeccCccCC--------CCceEEcccceEEeeccccccccccCcEE
Confidence            479  7778888   7899999999999999999998866542        236688888888765432      23788


Q ss_pred             EEEeCCCCCcEEEEEecChHHHHHHHHHHHHHH
Q 005588           92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELAL  124 (689)
Q Consensus        92 vI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai  124 (689)
                      .|..   +.|+|||+|+|++++++||++|+.|+
T Consensus        72 ei~t---p~rt~~l~A~se~e~e~WI~~i~~a~  101 (101)
T cd01264          72 EIFT---ADKTYILKAKDEKNAEEWLQCLNIAV  101 (101)
T ss_pred             EEEc---CCceEEEEeCCHHHHHHHHHHHHhhC
Confidence            8865   37999999999999999999998764

Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

Probab=99.63  E-value=1.5e-15  Score=134.85  Aligned_cols=92  Identities=27%  Similarity=0.370  Sum_probs=68.3

Q ss_pred             EEEeeeeeec-CC-CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-ccCCcceEEEEeCC
Q 005588           21 KSGPLFISSK-GI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVLFPDG   97 (689)
Q Consensus        21 KeG~L~l~Kk-G~-~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~-~~~kk~~FvI~~~~   97 (689)
                      ++|||+++.+ ++ ..+.|++|||||+++.|+||+++.+..+         .+.|+|..+..... ...++++|.|..  
T Consensus         2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~~~~~---------~~~I~L~~~~v~~~~~~~k~~~F~I~~--   70 (96)
T cd01260           2 CDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQDEKA---------EGLIFLSGFTIESAKEVKKKYAFKVCH--   70 (96)
T ss_pred             ceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCCCCcc---------ceEEEccCCEEEEchhcCCceEEEECC--
Confidence            6898885533 22 4679999999999999999999887653         34455555433222 244667788763  


Q ss_pred             CCCcEEEEEecChHHHHHHHHHHHHH
Q 005588           98 RDGRAFTLKAETSEDLYEWKTALELA  123 (689)
Q Consensus        98 ~~~rty~fqAdSeeE~~eWi~AL~~a  123 (689)
                      ++.++|+|+|+|++++++||.+|+.|
T Consensus        71 ~~~~~~~f~a~s~~e~~~Wi~ai~~~   96 (96)
T cd01260          71 PVYKSFYFAAETLDDLSQWVNHLITA   96 (96)
T ss_pred             CCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence            34599999999999999999999864

Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet

>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain

Probab=99.62  E-value=2.2e-15  Score=134.07  Aligned_cols=88  Identities=23%  Similarity=0.379  Sum_probs=67.4

Q ss_pred             EEeeeeeecCC--CCCCcEEEEEEEeC--CeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCC
Q 005588           22 SGPLFISSKGI--GWKSWKKRWFILTR--TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG   97 (689)
Q Consensus        22 eG~L~l~KkG~--~~k~WkKRWFVL~~--~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~   97 (689)
                      +|||+  |.|+  .+++|++|||||++  +.|+||+++.+..         ++|.|+|..+..+.....+++.|.|.+  
T Consensus         2 ~GyL~--K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d~~---------p~G~I~L~~~~~~~~~~~~~~~F~i~t--   68 (95)
T cd01265           2 CGYLH--KIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQDAK---------PLGRVDLSGAAFTYDPREEKGRFEIHS--   68 (95)
T ss_pred             cccEE--EecCCCCCcCceeEEEEEcCCCcEEEEECCCCccc---------ccceEECCccEEEcCCCCCCCEEEEEc--
Confidence            59666  5543  48999999999984  5899999988765         566777777544333333456676654  


Q ss_pred             CCCcEEEEEecChHHHHHHHHHHHHH
Q 005588           98 RDGRAFTLKAETSEDLYEWKTALELA  123 (689)
Q Consensus        98 ~~~rty~fqAdSeeE~~eWi~AL~~a  123 (689)
                       ++|+|+|+|+|+++|++||.+|+.+
T Consensus        69 -~~r~y~l~A~s~~e~~~Wi~al~~~   93 (95)
T cd01265          69 -NNEVIALKASSDKQMNYWLQALQSK   93 (95)
T ss_pred             -CCcEEEEECCCHHHHHHHHHHHHhh
Confidence             4799999999999999999999875

PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01238 PH_Tec Tec pleckstrin homology (PH) domain

Probab=99.62  E-value=1.9e-15  Score=137.09  Aligned_cols=94  Identities=23%  Similarity=0.251  Sum_probs=68.3

Q ss_pred             EEEEeeeeeecC---CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec---c------CC
Q 005588           20 FKSGPLFISSKG---IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---E------DK   87 (689)
Q Consensus        20 ~KeG~L~l~KkG---~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~---~------~k   87 (689)
                      +|+||||++.+|   .++++|++|||||++++|+||+++.+...       .+.|.|+|..+..+...   .      .+
T Consensus         1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~~-------~~kG~I~L~~~~~ve~~~~~~~~~~~~~~   73 (106)
T cd01238           1 ILESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEKRG-------SKKGSIDLSKIKCVETVKPEKNPPIPERF   73 (106)
T ss_pred             CcceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCccccc-------CcceeEECCcceEEEEecCCcCccccccc
Confidence            589988855333   23569999999999999999999765311       14556777665544321   1      23


Q ss_pred             cceEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHH
Q 005588           88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA  123 (689)
Q Consensus        88 k~~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~a  123 (689)
                      +++|.|.+   ..++|||+|+|++|+++||.||+++
T Consensus        74 ~~~F~i~t---~~r~~yl~A~s~~er~~WI~ai~~~  106 (106)
T cd01238          74 KYPFQVVH---DEGTLYVFAPTEELRKRWIKALKQV  106 (106)
T ss_pred             CccEEEEe---CCCeEEEEcCCHHHHHHHHHHHHhC
Confidence            56787765   3689999999999999999999864

Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis

>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain

Probab=99.61  E-value=5.2e-15  Score=138.03  Aligned_cols=99  Identities=27%  Similarity=0.491  Sum_probs=74.2

Q ss_pred             EEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-ccCCcceEEEEeCCC
Q 005588           20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVLFPDGR   98 (689)
Q Consensus        20 ~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~-~~~kk~~FvI~~~~~   98 (689)
                      .|+|||+  |+|+..+.|++|||||+++.|+||+++.+..         +.+.|+|..+..... ...+++||.|.....
T Consensus         1 ~k~G~L~--K~~~~~~~WkkRwfvL~~~~L~yyk~~~~~~---------~~g~I~L~~~~v~~~~~~~~~~~F~i~~~~~   69 (125)
T cd01252           1 DREGWLL--KQGGRVKTWKRRWFILTDNCLYYFEYTTDKE---------PRGIIPLENVSIREVEDPSKPFCFELFSPSD   69 (125)
T ss_pred             CcEEEEE--EeCCCCCCeEeEEEEEECCEEEEEcCCCCCC---------ceEEEECCCcEEEEcccCCCCeeEEEECCcc
Confidence            3789666  8887889999999999999999999987655         455566665433222 234667776654221


Q ss_pred             ------------------CCcEEEEEecChHHHHHHHHHHHHHHhhCCc
Q 005588           99 ------------------DGRAFTLKAETSEDLYEWKTALELALAQAPS  129 (689)
Q Consensus        99 ------------------~~rty~fqAdSeeE~~eWi~AL~~ai~~aP~  129 (689)
                                        ..++|+|+|+|++|+.+||+||+.++...|.
T Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~~~~  118 (125)
T cd01252          70 KQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISPNPF  118 (125)
T ss_pred             ccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcCch
Confidence                              2378999999999999999999999975543

Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain

Probab=99.60  E-value=3.9e-15  Score=132.87  Aligned_cols=90  Identities=27%  Similarity=0.490  Sum_probs=67.2

Q ss_pred             EEEeeeeeecCCCCCCcEEEEEEEeC--CeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec---------cCCcc
Q 005588           21 KSGPLFISSKGIGWKSWKKRWFILTR--TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---------EDKKL   89 (689)
Q Consensus        21 KeG~L~l~KkG~~~k~WkKRWFVL~~--~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~---------~~kk~   89 (689)
                      .+|||+  |+|...++|++|||||++  +.|+||+++.+..|         .+.|+|..+..+...         ....+
T Consensus         1 ~~G~L~--K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~---------~g~I~L~~~~~v~~~~~~~~~~~~~~~~~   69 (101)
T cd01235           1 CEGYLY--KRGALLKGWKPRWFVLDPDKHQLRYYDDFEDTAE---------KGCIDLAEVKSVNLAQPGMGAPKHTSRKG   69 (101)
T ss_pred             CeEEEE--EcCCCCCCccceEEEEECCCCEEEEecCCCCCcc---------ceEEEcceeEEEeecCCCCCCCCCCCCce
Confidence            479555  888889999999999994  49999999877663         344555554443221         12345


Q ss_pred             eEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHH
Q 005588           90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL  124 (689)
Q Consensus        90 ~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai  124 (689)
                      +|.+..   +.|+|+|+|++++++.+||.+|+.+|
T Consensus        70 ~f~i~t---~~r~~~~~a~s~~e~~~Wi~ai~~~i  101 (101)
T cd01235          70 FFDLKT---SKRTYNFLAENINEAQRWKEKIQQCI  101 (101)
T ss_pred             EEEEEe---CCceEEEECCCHHHHHHHHHHHHhhC
Confidence            566544   47999999999999999999999874

Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .

>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain

Probab=99.57  E-value=1.2e-14  Score=128.47  Aligned_cols=89  Identities=19%  Similarity=0.281  Sum_probs=69.1

Q ss_pred             EEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCCCCCc
Q 005588           22 SGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGR  101 (689)
Q Consensus        22 eG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~~~~r  101 (689)
                      +||  +.|+|...++|++|||||+++.|.||+++.+..+.       +.|.|+|..+..+.. ..++..|.|...  .++
T Consensus         2 ~G~--L~K~~~~~k~Wk~RwFvL~~g~L~Yyk~~~~~~~~-------~~G~I~L~~~~i~~~-~~~~~~F~i~~~--~~r   69 (91)
T cd01247           2 NGV--LSKWTNYINGWQDRYFVLKEGNLSYYKSEAEKSHG-------CRGSIFLKKAIIAAH-EFDENRFDISVN--ENV   69 (91)
T ss_pred             ceE--EEEeccccCCCceEEEEEECCEEEEEecCccCcCC-------CcEEEECcccEEEcC-CCCCCEEEEEeC--CCe
Confidence            694  45999999999999999999999999998764321       456677777544332 334567777542  359


Q ss_pred             EEEEEecChHHHHHHHHHHHH
Q 005588          102 AFTLKAETSEDLYEWKTALEL  122 (689)
Q Consensus       102 ty~fqAdSeeE~~eWi~AL~~  122 (689)
                      +|+|.|++++|+++||.||++
T Consensus        70 ~~~L~A~s~~e~~~Wi~al~~   90 (91)
T cd01247          70 VWYLRAENSQSRLLWMDSVVR   90 (91)
T ss_pred             EEEEEeCCHHHHHHHHHHHhh
Confidence            999999999999999999985

Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt

>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins

Probab=99.56  E-value=1.4e-14  Score=144.51  Aligned_cols=144  Identities=13%  Similarity=0.158  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHhcCCCcCCe---eecCCCHHHHHHHHH-HhhcCC--ccC-------CCCCCcccchhhHHHHhhhCCCC
Q 005588          182 SFLEKALRFLEKFGTKVEGI---LRQAADVEEVDRRVQ-EYEQGK--TEF-------SADEDAHVIGDCVKHVLRELPSS  248 (689)
Q Consensus       182 ~iL~~~i~~Le~~Gl~~EGI---FR~sG~~~~v~~L~~-~ld~g~--~~~-------~~~~Dvh~VAslLK~fLReLPeP  248 (689)
                      .+|..|...|+.+|+++++|   ||.+++...++.+.. .|+.+.  ...       ....|||+|+++||.|||.||.+
T Consensus         8 ~l~~~~t~eLk~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP~~   87 (198)
T cd04401           8 GLIHNITEELKSRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRLPGS   87 (198)
T ss_pred             HHHHHHHHHHHhcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHCCCC
Confidence            47888999999999999999   999999999998855 455442  111       23479999999999999999999


Q ss_pred             CCCh-hhHHHHHHHHhcCCHHHHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccCCC
Q 005588          249 PVPA-SCCTALLEAYKIDRKEARISAMRSAILETF-PEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL  326 (689)
Q Consensus       249 Llp~-~ly~~~i~~~~~~~~e~ri~~l~~lIl~~L-P~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr~~  326 (689)
                      +|+. +.|..|...-+..+  .-..+++.+|-..+ |+.|..++..++.+|..|+.|+..|+|+..||+.+|||.+|..+
T Consensus        88 ~v~~~~~Y~~F~~~E~~~~--~p~~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF~~~  165 (198)
T cd04401          88 KVIWWEVYEEFKARERRSN--YPADAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAFGKP  165 (198)
T ss_pred             ccCCHHHHHHHHHHHHhcC--CcHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHcCCC
Confidence            9999 99999998643322  22337777664333 78899999999999999999999999999999999999999877


Q ss_pred             C
Q 005588          327 L  327 (689)
Q Consensus       327 ~  327 (689)
                      .
T Consensus       166 ~  166 (198)
T cd04401         166 T  166 (198)
T ss_pred             C
Confidence            4

Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd01241 PH_Akt Akt pleckstrin homology (PH) domain

Probab=99.54  E-value=3.6e-14  Score=127.94  Aligned_cols=97  Identities=22%  Similarity=0.316  Sum_probs=70.2

Q ss_pred             eEEEEeeeeeecCCCCCCcEEEEEEEe-CCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCC
Q 005588           19 VFKSGPLFISSKGIGWKSWKKRWFILT-RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG   97 (689)
Q Consensus        19 V~KeG~L~l~KkG~~~k~WkKRWFVL~-~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~   97 (689)
                      |+|+|||  .|+|+..+.|++|||+|+ ++.|+||++++.....    ..++++++.+..|..+.....+.+.|.|....
T Consensus         1 v~k~G~L--~K~g~~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~----~~i~l~~~~v~~~~~~~~~~~~~~~F~i~~~~   74 (102)
T cd01241           1 VVKEGWL--HKRGEYIKTWRPRYFLLKSDGSFIGYKEKPEDGDP----FLPPLNNFSVAECQLMKTERPRPNTFIIRCLQ   74 (102)
T ss_pred             CcEEEEE--EeecCCCCCCeeEEEEEeCCCeEEEEecCCCccCc----cccccCCeEEeeeeeeeccCCCcceEEEEecc
Confidence            5799955  489999999999999999 7889999887643321    23467777776655444444555678776211


Q ss_pred             ---CCCcEEEEEecChHHHHHHHHHHHHH
Q 005588           98 ---RDGRAFTLKAETSEDLYEWKTALELA  123 (689)
Q Consensus        98 ---~~~rty~fqAdSeeE~~eWi~AL~~a  123 (689)
                         ...|  +|+|+|++|+++||.||+.+
T Consensus        75 ~~~~~~r--~f~a~s~ee~~eWi~ai~~v  101 (102)
T cd01241          75 WTTVIER--TFHVESPEEREEWIHAIQTV  101 (102)
T ss_pred             CCcccCE--EEEeCCHHHHHHHHHHHHhh
Confidence               2234  45799999999999999876

Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain

Probab=99.54  E-value=2.1e-14  Score=129.59  Aligned_cols=90  Identities=30%  Similarity=0.531  Sum_probs=66.3

Q ss_pred             EEEeeeeeecC-------CCCCCcEEEEEEEe-CCeEEEEcCCC-CCCCCCCceeeeeeCcEEcCCCcceeecc---CCc
Q 005588           21 KSGPLFISSKG-------IGWKSWKKRWFILT-RTSLVFFKNDP-SALPQRGGEVNLTLGGIDLNNSGSVVVRE---DKK   88 (689)
Q Consensus        21 KeG~L~l~KkG-------~~~k~WkKRWFVL~-~~~L~YYKd~~-~~~p~~~~e~~l~L~~I~L~~~~sv~~~~---~kk   88 (689)
                      ++|||++.--|       ..+|+||||||||+ ++.|+||++.. ...         +.|.|+|+.|..|....   .+.
T Consensus         1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~~~---------p~G~IdL~~~~~V~~~~~~~~~~   71 (104)
T cd01236           1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPTTL---------PQGTIDMNQCTDVVDAEARTGQK   71 (104)
T ss_pred             CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCCcc---------cceEEEccceEEEeecccccCCc
Confidence            47988755333       24799999999998 56888887663 444         45668888877765432   234


Q ss_pred             ceEEEEeCCCCCcEEEEEecChHHHHHHHHHHHH
Q 005588           89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALEL  122 (689)
Q Consensus        89 ~~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~  122 (689)
                      ++|.|.+   +.|+|||.|+|++|+++|+.+|..
T Consensus        72 ~~f~I~t---p~R~f~l~Aete~E~~~Wi~~l~~  102 (104)
T cd01236          72 FSICILT---PDKEHFIKAETKEEISWWLNMLMV  102 (104)
T ss_pred             cEEEEEC---CCceEEEEeCCHHHHHHHHHHHHh
Confidence            6777754   389999999999999999999863

Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain

Probab=99.50  E-value=8.8e-14  Score=126.58  Aligned_cols=88  Identities=19%  Similarity=0.145  Sum_probs=63.3

Q ss_pred             EEeeeeeecCC----CCCCcEEEEEEEeCCe-------EEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-----cc
Q 005588           22 SGPLFISSKGI----GWKSWKKRWFILTRTS-------LVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-----RE   85 (689)
Q Consensus        22 eG~L~l~KkG~----~~k~WkKRWFVL~~~~-------L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~-----~~   85 (689)
                      +|||.  |+|.    ..++|++|||||+++.       |.||+++....         +.+.|+|..+..+..     ..
T Consensus         2 eGwL~--K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k---------~~g~I~L~~~~~v~~~~~~~~~   70 (108)
T cd01266           2 EGWLK--KSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRKFK---------LEFVIDLESCSQVDPGLLCTAG   70 (108)
T ss_pred             ceeee--eCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCCCc---------cceEEECCccEEEccccccccc
Confidence            79555  6665    3469999999999876       59999987765         445566666444321     11


Q ss_pred             --CCcceEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHH
Q 005588           86 --DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA  123 (689)
Q Consensus        86 --~kk~~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~a  123 (689)
                        ...+.|.+..   +.|+|+|.|+|++||++||.+|+++
T Consensus        71 ~~~~~~~f~i~t---~~r~y~l~A~s~ee~~~Wi~~I~~~  107 (108)
T cd01266          71 NCIFGYGFDIET---IVRDLYLVAKNEEEMTLWVNCICKL  107 (108)
T ss_pred             CcccceEEEEEe---CCccEEEEECCHHHHHHHHHHHHhh
Confidence              1224465543   4799999999999999999999864

Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str

>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain

Probab=99.50  E-value=9.7e-14  Score=124.79  Aligned_cols=91  Identities=29%  Similarity=0.399  Sum_probs=68.6

Q ss_pred             eEEEEeeeeeecCCCCCCcEEEEEEEeCC------eEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC--Ccce
Q 005588           19 VFKSGPLFISSKGIGWKSWKKRWFILTRT------SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED--KKLL   90 (689)
Q Consensus        19 V~KeG~L~l~KkG~~~k~WkKRWFVL~~~------~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~--kk~~   90 (689)
                      |+|+|||.  |+    +.|+||||||++.      .|.||++++.....+    ..+.+.|+|..|..+....+  ++++
T Consensus         2 v~k~GyL~--K~----K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~----~~p~~vI~L~~c~~v~~~~d~k~~~~   71 (101)
T cd01257           2 VRKSGYLR--KQ----KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKG----SAPKRVIPLESCFNINKRADAKHRHL   71 (101)
T ss_pred             ccEEEEEe--Ee----cCcEeEEEEEecCCCCCCceEEEECChhhccccC----CCceEEEEccceEEEeeccccccCeE
Confidence            78999665  54    6899999999987      799999987532111    11567788888877654322  3467


Q ss_pred             EEEEeCCCCCcEEEEEecChHHHHHHHHHHHH
Q 005588           91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALEL  122 (689)
Q Consensus        91 FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~  122 (689)
                      |.|.+   +.++|+|.|+|++|+++|+.+|..
T Consensus        72 f~i~t---~dr~f~l~aese~E~~~Wi~~i~~  100 (101)
T cd01257          72 IALYT---RDEYFAVAAENEAEQDSWYQALLE  100 (101)
T ss_pred             EEEEe---CCceEEEEeCCHHHHHHHHHHHhh
Confidence            77754   368999999999999999999864

Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.

>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain

Probab=99.49  E-value=1.6e-13  Score=119.29  Aligned_cols=91  Identities=27%  Similarity=0.419  Sum_probs=66.7

Q ss_pred             EEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCCCCC
Q 005588           21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDG  100 (689)
Q Consensus        21 KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~~~~  100 (689)
                      ++|||+  |++...+.|++|||+|+++.|+||+++.....       .+.+.|.|..+. +......+++|.|..  +++
T Consensus         1 ~~G~L~--k~~~~~~~W~~r~~vl~~~~L~~~~~~~~~~~-------~~~~~i~l~~~~-~~~~~~~~~~F~i~~--~~~   68 (91)
T cd01246           1 VEGWLL--KWTNYLKGWQKRWFVLDNGLLSYYKNKSSMRG-------KPRGTILLSGAV-ISEDDSDDKCFTIDT--GGD   68 (91)
T ss_pred             CeEEEE--EecccCCCceeeEEEEECCEEEEEecCccCCC-------CceEEEEeceEE-EEECCCCCcEEEEEc--CCC
Confidence            479665  76766789999999999999999999876510       033445555543 222233456777754  345


Q ss_pred             cEEEEEecChHHHHHHHHHHHHH
Q 005588          101 RAFTLKAETSEDLYEWKTALELA  123 (689)
Q Consensus       101 rty~fqAdSeeE~~eWi~AL~~a  123 (689)
                      ++|+|+|+|.+|+.+|+.||+.|
T Consensus        69 ~~~~~~a~s~~e~~~Wi~al~~a   91 (91)
T cd01246          69 KTLHLRANSEEERQRWVDALELA   91 (91)
T ss_pred             CEEEEECCCHHHHHHHHHHHHhC
Confidence            99999999999999999999864

Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain

Probab=99.47  E-value=1.8e-13  Score=119.82  Aligned_cols=90  Identities=22%  Similarity=0.445  Sum_probs=63.1

Q ss_pred             EEEeeeeeecCCC-CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc--CCcceEEEEeCC
Q 005588           21 KSGPLFISSKGIG-WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE--DKKLLTVLFPDG   97 (689)
Q Consensus        21 KeG~L~l~KkG~~-~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~--~kk~~FvI~~~~   97 (689)
                      |+|||+  |++.. .+.|++|||+|+++.|+||+++.....  .     +.+.|++..+.......  .++++|.|... 
T Consensus         1 k~G~L~--kk~~~~~~~W~kr~~~L~~~~l~~y~~~~~~~~--~-----~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~-   70 (94)
T cd01250           1 KQGYLY--KRSSKSNKEWKKRWFVLKNGQLTYHHRLKDYDN--A-----HVKEIDLRRCTVRHNGKQPDRRFCFEVISP-   70 (94)
T ss_pred             CcceEE--EECCCcCCCceEEEEEEeCCeEEEEcCCccccc--c-----cceEEeccceEEecCccccCCceEEEEEcC-
Confidence            589776  55433 788999999999999999999875311  1     12234444322211112  25678888652 


Q ss_pred             CCCcEEEEEecChHHHHHHHHHHHH
Q 005588           98 RDGRAFTLKAETSEDLYEWKTALEL  122 (689)
Q Consensus        98 ~~~rty~fqAdSeeE~~eWi~AL~~  122 (689)
                        .++|+|+|+|.+++.+|+.||+.
T Consensus        71 --~~~~~f~a~s~~~~~~Wi~al~~   93 (94)
T cd01250          71 --TKTWHFQADSEEERDDWISAIQE   93 (94)
T ss_pred             --CcEEEEECCCHHHHHHHHHHHhc
Confidence              49999999999999999999975

Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1

Probab=99.43  E-value=1e-13  Score=121.46  Aligned_cols=65  Identities=51%  Similarity=0.622  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccc-CCCccCCccccchhHHHHHH
Q 005588          614 RRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQF-SSSRGMDSKVCTDHKRFVSF  678 (689)
Q Consensus       614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~-~~~~~~d~~~~~~lee~~~~  678 (689)
                      |||+++|++|.+|||||.+||+|||.|+++|.|||.||+.+.|.+ ++|.+|+.++++.|+|||..
T Consensus         1 ~rk~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~l   66 (88)
T PF14389_consen    1 KRKQALHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALL   66 (88)
T ss_pred             CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHH
Confidence            589999999999999999999999999999999999999999888 78899999999999999963

>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain

Probab=99.41  E-value=6.2e-13  Score=118.76  Aligned_cols=88  Identities=17%  Similarity=0.259  Sum_probs=67.0

Q ss_pred             EEeeeeeecCCC-CCCcEEEEEEEeC----CeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc---CCcceEEE
Q 005588           22 SGPLFISSKGIG-WKSWKKRWFILTR----TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE---DKKLLTVL   93 (689)
Q Consensus        22 eG~L~l~KkG~~-~k~WkKRWFVL~~----~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~---~kk~~FvI   93 (689)
                      .|||.  |+|+. .|.||+|||+|.+    +.|+||++..++.         +++.|++..+....+.+   .+++||.+
T Consensus         2 ~G~l~--K~g~~~~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~---------p~gli~l~~~~V~~v~ds~~~r~~cFel   70 (98)
T cd01245           2 KGNLL--KRTKSVTKLWKTLYFALILDGSRSHESLLSSPKKTK---------PIGLIDLSDAYLYPVHDSLFGRPNCFQI   70 (98)
T ss_pred             CCccc--cCCCCcccccceeEEEEecCCCCceEEEEcCCCCCC---------ccceeeccccEEEEccccccCCCeEEEE
Confidence            48554  88877 9999999999987    8999999998877         45557777763222222   56689988


Q ss_pred             EeCCCCCcEEEEEecChHHHHHHHHHHHH
Q 005588           94 FPDGRDGRAFTLKAETSEDLYEWKTALEL  122 (689)
Q Consensus        94 ~~~~~~~rty~fqAdSeeE~~eWi~AL~~  122 (689)
                      ..... ..+|+++|++ +|+++||.+|++
T Consensus        71 ~~~~~-~~~y~~~a~~-~er~~Wi~~l~~   97 (98)
T cd01245          71 VERAL-PTVYYSCRSS-EERDKWIESLQA   97 (98)
T ss_pred             ecCCC-CeEEEEeCCH-HHHHHHHHHHhc
Confidence            75211 2699999999 999999999985

RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain

Probab=99.41  E-value=1e-12  Score=121.93  Aligned_cols=98  Identities=21%  Similarity=0.250  Sum_probs=70.1

Q ss_pred             EEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee------ccCCcceEEE
Q 005588           20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV------REDKKLLTVL   93 (689)
Q Consensus        20 ~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~------~~~kk~~FvI   93 (689)
                      ...|||.+....++.++|++|||||+|+.|+||+.+.+.. ..     .+++.|+|..|.....      .-.+++.|.|
T Consensus         2 ~~~GfL~~~q~~~~~k~W~RRWFvL~g~~L~y~k~p~d~~-~~-----~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i   75 (122)
T cd01263           2 EYHGFLTMFEDTSGFGAWHRRWCALEGGEIKYWKYPDDEK-RK-----GPTGLIDLSTCTSSEGASAVRDICARPNTFHL   75 (122)
T ss_pred             ccceeEEEEeccCCCCCceEEEEEEeCCEEEEEcCCCccc-cC-----CceEEEEhhhCcccccccCChhhcCCCCeEEE
Confidence            4579998766666799999999999999999999877632 11     2677788877666433      2335566666


Q ss_pred             EeCCCC----------------Cc-EEEEEecChHHHHHHHHHHHHH
Q 005588           94 FPDGRD----------------GR-AFTLKAETSEDLYEWKTALELA  123 (689)
Q Consensus        94 ~~~~~~----------------~r-ty~fqAdSeeE~~eWi~AL~~a  123 (689)
                      ....+.                .+ -|+|.|+|.+|+++|+.||+.+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~  122 (122)
T cd01263          76 DVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST  122 (122)
T ss_pred             EEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence            431111                12 2679999999999999999853

Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain

Probab=99.40  E-value=1.2e-12  Score=117.10  Aligned_cols=77  Identities=22%  Similarity=0.233  Sum_probs=58.5

Q ss_pred             CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc----CCcceEEEEeCCCCCcEEEEEecC
Q 005588           34 WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE----DKKLLTVLFPDGRDGRAFTLKAET  109 (689)
Q Consensus        34 ~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~----~kk~~FvI~~~~~~~rty~fqAdS  109 (689)
                      .++||+|||+|+++.|+||+++.. .         +.+.|+|.....|....    .+.++|.|..   +.++|||+|+|
T Consensus        18 ~~n~KkRwF~Lt~~~L~Y~k~~~~-~---------~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt---~~r~~yi~a~s   84 (98)
T cd01244          18 VLHFKKRYFQLTTTHLSWAKDVQC-K---------KSALIKLAAIKGTEPLSDKSFVNVDIITIVC---EDDTMQLQFEA   84 (98)
T ss_pred             CcCCceeEEEECCCEEEEECCCCC-c---------eeeeEEccceEEEEEcCCcccCCCceEEEEe---CCCeEEEECCC
Confidence            478999999999999999997653 2         45667777766543322    2235666644   26899999999


Q ss_pred             hHHHHHHHHHHHHH
Q 005588          110 SEDLYEWKTALELA  123 (689)
Q Consensus       110 eeE~~eWi~AL~~a  123 (689)
                      +.|+++||.||+++
T Consensus        85 ~~E~~~Wi~al~k~   98 (98)
T cd01244          85 PVEATDWLNALEKQ   98 (98)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999999863

RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]

Probab=99.39  E-value=4.4e-12  Score=111.06  Aligned_cols=101  Identities=23%  Similarity=0.420  Sum_probs=69.9

Q ss_pred             eEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCccee--eccCCcceEEEEeC
Q 005588           19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV--VREDKKLLTVLFPD   96 (689)
Q Consensus        19 V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~--~~~~kk~~FvI~~~   96 (689)
                      ++++|||+  +++...+.|++|||||+++.|+||+++.... ...+...+++..+.+.......  .....+++|.|...
T Consensus         1 ~~~~G~L~--~~~~~~~~wk~r~~vL~~~~L~~~~~~~~~~-~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~   77 (104)
T PF00169_consen    1 CIKEGWLL--KKSSSRKKWKKRYFVLRDSYLLYYKSSKDKS-DSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTP   77 (104)
T ss_dssp             EEEEEEEE--EEESSSSSEEEEEEEEETTEEEEESSTTTTT-ESSESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEET
T ss_pred             CEEEEEEE--EECCCCCCeEEEEEEEECCEEEEEecCcccc-ceeeeEEEEecCceEEEcCccccccccCCCcEEEEEeC
Confidence            58999777  5556678999999999999999999987411 1122233344443333221110  11245578888763


Q ss_pred             CCCCcEEEEEecChHHHHHHHHHHHHHH
Q 005588           97 GRDGRAFTLKAETSEDLYEWKTALELAL  124 (689)
Q Consensus        97 ~~~~rty~fqAdSeeE~~eWi~AL~~ai  124 (689)
                        .+++|+|+|+|++++..|+.+|+.++
T Consensus        78 --~~~~~~~~~~s~~~~~~W~~~i~~~~  103 (104)
T PF00169_consen   78 --NGKSYLFSAESEEERKRWIQAIQKAI  103 (104)
T ss_dssp             --TSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             --CCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence              34699999999999999999999886

The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....

>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain

Probab=99.30  E-value=1.6e-11  Score=113.23  Aligned_cols=101  Identities=21%  Similarity=0.256  Sum_probs=68.4

Q ss_pred             EEEeeeee-------ecC-CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec--cCCcce
Q 005588           21 KSGPLFIS-------SKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--EDKKLL   90 (689)
Q Consensus        21 KeG~L~l~-------KkG-~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~--~~kk~~   90 (689)
                      |+|+|..+       ||. .+.+.|+++||||+|+.|++|||+...... . ...-....|.|..+......  ..+++.
T Consensus         2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~-~-~~~~~~~~Isi~~a~~~ia~dy~Kr~~V   79 (117)
T cd01230           2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKS-L-SETELKNAISIHHALATRASDYSKKPHV   79 (117)
T ss_pred             CCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcccccc-c-ccccccceEEeccceeEeeccccCCCcE
Confidence            68877744       111 125789999999999999999998642211 0 00001234666665532222  334455


Q ss_pred             EEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHHh
Q 005588           91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA  125 (689)
Q Consensus        91 FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~  125 (689)
                      |.|.  .++++.|+|||.+.+||+.||.+|+.+++
T Consensus        80 F~L~--~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~  112 (117)
T cd01230          80 FRLR--TADWREFLFQTSSLKELQSWIERINVVAA  112 (117)
T ss_pred             EEEE--cCCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence            5554  46789999999999999999999999875

EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain

Probab=99.29  E-value=1.1e-11  Score=111.65  Aligned_cols=94  Identities=29%  Similarity=0.411  Sum_probs=62.4

Q ss_pred             EEeeeeee------cCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec--cCCcceEEE
Q 005588           22 SGPLFISS------KGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--EDKKLLTVL   93 (689)
Q Consensus        22 eG~L~l~K------kG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~--~~kk~~FvI   93 (689)
                      +|+|..+.      +....+.|++|||||+++.|+||+++........+..     .|++..+......  ..++++|.|
T Consensus         2 ~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~-----~i~l~~~~i~~~~~~~k~~~~F~l   76 (104)
T cd01253           2 EGSLERKHELESGGKKASNRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEP-----PVDLTGAQCEVASDYTKKKHVFRL   76 (104)
T ss_pred             CceEeEEEEeecCCcccCCCCcceEEEEEeCCEEEEEecCcccccCCCCCC-----cEeccCCEEEecCCcccCceEEEE
Confidence            57666331      1224788999999999999999998764421111111     2344322221111  244577777


Q ss_pred             EeCCCCCcEEEEEecChHHHHHHHHHHHH
Q 005588           94 FPDGRDGRAFTLKAETSEDLYEWKTALEL  122 (689)
Q Consensus        94 ~~~~~~~rty~fqAdSeeE~~eWi~AL~~  122 (689)
                      ..  +++++|+|+|+++++|..|+.+|+.
T Consensus        77 ~~--~~~~~~~f~a~s~e~~~~Wi~aL~~  103 (104)
T cd01253          77 RL--PDGAEFLFQAPDEEEMSSWVRALKS  103 (104)
T ss_pred             Ee--cCCCEEEEECCCHHHHHHHHHHHhc
Confidence            63  4689999999999999999999975

Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.26  E-value=1.3e-11  Score=125.73  Aligned_cols=101  Identities=31%  Similarity=0.486  Sum_probs=74.6

Q ss_pred             eEEEEeeeeeecCC-CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec-cCCcceEEEEe-
Q 005588           19 VFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-EDKKLLTVLFP-   95 (689)
Q Consensus        19 V~KeG~L~l~KkG~-~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~-~~kk~~FvI~~-   95 (689)
                      ..++|||+  |.|+ +.+.||+|||+|+.++||||.--.+..|+|         .|++.+...-.+. ..+++||.+.. 
T Consensus       260 pdREGWLl--Klgg~rvktWKrRWFiLtdNCLYYFe~tTDKEPrG---------IIpLeNlsir~VedP~kP~cfEly~p  328 (395)
T KOG0930|consen  260 PDREGWLL--KLGGNRVKTWKRRWFILTDNCLYYFEYTTDKEPRG---------IIPLENLSIREVEDPKKPNCFELYIP  328 (395)
T ss_pred             ccccceee--eecCCcccchhheeEEeecceeeeeeeccCCCCCc---------ceeccccceeeccCCCCCCeEEEecC
Confidence            46789777  4444 789999999999999999998877777544         4555554332222 45668887753 


Q ss_pred             CC-----------CCCc-------EEEEEecChHHHHHHHHHHHHHHhhCCcc
Q 005588           96 DG-----------RDGR-------AFTLKAETSEDLYEWKTALELALAQAPSA  130 (689)
Q Consensus        96 ~~-----------~~~r-------ty~fqAdSeeE~~eWi~AL~~ai~~aP~~  130 (689)
                      ..           .+||       +|.++|.+.+|+.+||.+|+.+++..|-.
T Consensus       329 s~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~~Pfy  381 (395)
T KOG0930|consen  329 SNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISRDPFY  381 (395)
T ss_pred             CCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhccCcHH
Confidence            21           1232       79999999999999999999999876654

>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C

Probab=99.23  E-value=3.8e-11  Score=110.17  Aligned_cols=97  Identities=32%  Similarity=0.526  Sum_probs=49.7

Q ss_pred             EEEeeeeeecCCC-CCCcEEEEEEEe-CCeEEEEcCCCCCCCCC--C--ceeeeeeCcEEcCCCcc-ee--------ecc
Q 005588           21 KSGPLFISSKGIG-WKSWKKRWFILT-RTSLVFFKNDPSALPQR--G--GEVNLTLGGIDLNNSGS-VV--------VRE   85 (689)
Q Consensus        21 KeG~L~l~KkG~~-~k~WkKRWFVL~-~~~L~YYKd~~~~~p~~--~--~e~~l~L~~I~L~~~~s-v~--------~~~   85 (689)
                      |+||||  |++.. .+.|++|||+|. ++.|.|||.+.......  +  ....+..+.+....... ..        ...
T Consensus         1 k~G~l~--K~~~~~~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (112)
T PF15413_consen    1 KEGYLY--KWGNKFGKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGEI   78 (112)
T ss_dssp             EEEEEE--E--TTS-S--EEEEEEEE-TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T--SS-
T ss_pred             CCceEE--EecCCCCcCccccEEEEEeCCEEEEeecccccccccccccchhceEeecccCcccccccccccccCCcccCc
Confidence            689776  88876 899999999999 99999999933221000  0  00000001111111000 00        001


Q ss_pred             CCcceEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHH
Q 005588           86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA  123 (689)
Q Consensus        86 ~kk~~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~a  123 (689)
                      .. ..+.+.+   +.++|+|.|++.+|+.+|+.||+.|
T Consensus        79 ~~-~~~~i~T---~~kt~~l~~~t~~d~~~Wi~aL~~~  112 (112)
T PF15413_consen   79 HL-KVFSIFT---PTKTFHLRCETREDRYDWIEALQEA  112 (112)
T ss_dssp             SS-EEEEEE----SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred             CC-CCcEEEC---CCcEEEEEECCHHHHHHHHHHHHhC
Confidence            11 2233322   3799999999999999999999875

>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]

Probab=99.20  E-value=2.6e-11  Score=129.59  Aligned_cols=185  Identities=17%  Similarity=0.216  Sum_probs=146.3

Q ss_pred             cccccchHHHhhh-----CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCC----------------
Q 005588          164 LVVGRPILLALED-----IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK----------------  222 (689)
Q Consensus       164 ~vFG~pL~~ll~~-----~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~----------------  222 (689)
                      ++-|.++...+..     ....|.++...+.+.+.+|+.++||+|.++..++.++++..-..|+                
T Consensus        50 ~~~~l~~~~~v~~d~e~d~~~~~~~f~~~~~~~e~~~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~~~~k~  129 (514)
T KOG4370|consen   50 RVLGLPLTESVSADPELDGIPLPSFFRYAIDFVEENGLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAAGLIKR  129 (514)
T ss_pred             hhhcCCCCcccccCcccCCCcCcccchhhhhhhhccccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHHhHHHH
Confidence            3555555333321     2347899999999999999999999999988866655554332211                


Q ss_pred             -------------------------ccCCCCCCcccchhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHH
Q 005588          223 -------------------------TEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSA  277 (689)
Q Consensus       223 -------------------------~~~~~~~Dvh~VAslLK~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~l  277 (689)
                                               ......+.|.+||+|||.|||+||+||++.++...|..++.......+.+.++.+
T Consensus       130 ~~~~i~Epvvpi~~p~V~r~Ci~e~~~~~~~l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h~~~t~~q~efq~l  209 (514)
T KOG4370|consen  130 FLRQIPEPVVPIEFPSVARSCIREGLATTTQLTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLHAQHTMGQNEFQFL  209 (514)
T ss_pred             hhhccCCccccccchHHHHHHhhccccchhhcCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHccchhhHHHHHHHHH
Confidence                                     0011245788999999999999999999999999999999888888888999986


Q ss_pred             HhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHH
Q 005588          278 ILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNA  357 (689)
Q Consensus       278 Il~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~  357 (689)
                      + ..||..||.++.||+-|+..|....-.|||++.||+|+..|++=-.                                
T Consensus       210 l-k~Lp~cNyll~swl~lH~d~vi~~e~~~Kln~q~i~i~lspt~q~s--------------------------------  256 (514)
T KOG4370|consen  210 L-KILPKCNYLLYSWLNLHKDKVIEEEYCLKLNKQQIFINLSPTEQES--------------------------------  256 (514)
T ss_pred             H-HhccccchHHHHHHHHHHHHHHHHHHHhhcchhheeeecchHHHHH--------------------------------
Confidence            5 6999999999999999999999999999999999999988876432                                


Q ss_pred             HHHHHHHHHhccccCCCCCccccc
Q 005588          358 QAIIATLLEEYENIFDDESLHRCS  381 (689)
Q Consensus       358 ~~iVe~LIen~~~IF~~~~~~~~~  381 (689)
                      +.++..|.-|+..||++.-+..|.
T Consensus       257 ~r~l~al~~h~q~lf~~v~l~~~~  280 (514)
T KOG4370|consen  257 KRGLQALGLHLQTLFEMVRLMVCF  280 (514)
T ss_pred             HHHHHHHHHHHHHHHhhheeeeee
Confidence            245777788888889887654433

>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain

Probab=99.16  E-value=1.7e-10  Score=103.77  Aligned_cols=90  Identities=22%  Similarity=0.403  Sum_probs=66.3

Q ss_pred             cCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEE-eCCCCCcEEEEEec
Q 005588           30 KGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF-PDGRDGRAFTLKAE  108 (689)
Q Consensus        30 kG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~-~~~~~~rty~fqAd  108 (689)
                      +...+++||+|||+|+++.|+|||++.+..  +.+.+.+.+.++.+.....+   ..+++++.+. +...+.++|+|.|+
T Consensus        13 ~~~~~K~~KrrwF~lk~~~L~YyK~kee~~--~~p~i~lnl~gcev~~dv~~---~~~kf~I~l~~ps~~~~r~y~l~cd   87 (106)
T cd01237          13 KKLTLKGYKQYWFTFRDTSISYYKSKEDSN--GAPIGQLNLKGCEVTPDVNV---AQQKFHIKLLIPTAEGMNEVWLRCD   87 (106)
T ss_pred             chhhhhhheeEEEEEeCCEEEEEccchhcC--CCCeEEEecCceEEcccccc---cccceEEEEecCCccCCeEEEEECC
Confidence            344578899999999999999999987643  45555666667766654322   2345655554 32334489999999


Q ss_pred             ChHHHHHHHHHHHHHH
Q 005588          109 TSEDLYEWKTALELAL  124 (689)
Q Consensus       109 SeeE~~eWi~AL~~ai  124 (689)
                      |++++.+||.|++.|.
T Consensus        88 sEeqya~Wmaa~rlas  103 (106)
T cd01237          88 NEKQYAKWMAACRLAS  103 (106)
T ss_pred             CHHHHHHHHHHHHHhh
Confidence            9999999999999774

Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]

Probab=99.13  E-value=6.7e-11  Score=136.43  Aligned_cols=146  Identities=22%  Similarity=0.287  Sum_probs=129.9

Q ss_pred             CCcHHHHHHHHHHHhcCCCcCCeee-cCCCHHHHHHHHHHhhcCCcc--CCCCCCcccchhhHHHHhhhCCCC-CCChhh
Q 005588          179 GGPSFLEKALRFLEKFGTKVEGILR-QAADVEEVDRRVQEYEQGKTE--FSADEDAHVIGDCVKHVLRELPSS-PVPASC  254 (689)
Q Consensus       179 ~VP~iL~~~i~~Le~~Gl~~EGIFR-~sG~~~~v~~L~~~ld~g~~~--~~~~~Dvh~VAslLK~fLReLPeP-Llp~~l  254 (689)
                      .||.++..|+.+++.+|+..+|||| +++....|..++.++.+|...  ...+.+... |.++|.|+|.|.+| +|+++.
T Consensus       217 ~iP~i~d~~~~l~~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f~~e~  295 (640)
T KOG3565|consen  217 FIPLIVDSLQRLEERRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLNDPDLDS-AGVLKLYFRGLEEPADFPFED  295 (640)
T ss_pred             cccHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCcchhH-HHHHHHHHccCCCcccCcccc
Confidence            4999999999999999999999999 899999999999999998421  122334455 99999999999999 999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccCCC
Q 005588          255 CTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL  326 (689)
Q Consensus       255 y~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr~~  326 (689)
                      |..|+.+....+.-+.+..++.++. .+|..+..++.+|+.|+...++.+..|.|++.|+|+||||.++..+
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~L~-~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~~  366 (640)
T KOG3565|consen  296 FGQPHDCAARDNLLSRALHVRKLLK-SLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPVP  366 (640)
T ss_pred             ccchhhhhhhcCchhhhhhhhhhhh-ccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccCc
Confidence            9999999888777777788888774 8999999999999999999999999999999999999999997654

>PF15409 PH_8: Pleckstrin homology domain

Probab=99.12  E-value=3.6e-10  Score=98.94  Aligned_cols=86  Identities=27%  Similarity=0.479  Sum_probs=61.6

Q ss_pred             EeeeeeecCCCCCCcEEEEEEE--eCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCCCCC
Q 005588           23 GPLFISSKGIGWKSWKKRWFIL--TRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDG  100 (689)
Q Consensus        23 G~L~l~KkG~~~k~WkKRWFVL--~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~~~~  100 (689)
                      |||.+ |+....++|++|||||  ..+.|.||+++.+..         .-|.|+|..+. +.. ..+...+.|..   ..
T Consensus         1 G~llK-krr~~lqG~~kRyFvL~~~~G~LsYy~~~~~~~---------~rGsi~v~~a~-is~-~~~~~~I~ids---g~   65 (89)
T PF15409_consen    1 GWLLK-KRRKPLQGWHKRYFVLDFEKGTLSYYRNQNSGK---------LRGSIDVSLAV-ISA-NKKSRRIDIDS---GD   65 (89)
T ss_pred             Cccee-eccccCCCceeEEEEEEcCCcEEEEEecCCCCe---------eEeEEEccceE-EEe-cCCCCEEEEEc---CC
Confidence            66653 3344578999999999  889999999876542         33456666542 222 23444555543   36


Q ss_pred             cEEEEEecChHHHHHHHHHHHHH
Q 005588          101 RAFTLKAETSEDLYEWKTALELA  123 (689)
Q Consensus       101 rty~fqAdSeeE~~eWi~AL~~a  123 (689)
                      .+|+|.|.++++.+.|+.||+.|
T Consensus        66 ~i~hLKa~s~~~f~~Wv~aL~~a   88 (89)
T PF15409_consen   66 EIWHLKAKSQEDFQRWVSALQKA   88 (89)
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhc
Confidence            89999999999999999999875

>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain

Probab=99.11  E-value=5.1e-10  Score=100.77  Aligned_cols=98  Identities=14%  Similarity=0.168  Sum_probs=69.0

Q ss_pred             eEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-ccCCcceEEEEeCC
Q 005588           19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVLFPDG   97 (689)
Q Consensus        19 V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~-~~~kk~~FvI~~~~   97 (689)
                      .+|+|  |+.|.+...+.|+.|||.|-++.|.|++......   +.. ....+.|++........ ....++.|.|... 
T Consensus         2 ~ikeG--~L~K~~~~~~~~k~RyffLFnd~Ll~~~~~~~~~---~~~-y~~~~~i~l~~~~v~~~~~~~~~~~F~I~~~-   74 (101)
T cd01219           2 LLKEG--SVLKISSTTEKTEERYLFLFNDLLLYCVPRKMIG---GSK-FKVRARIDVSGMQVCEGDNLERPHSFLVSGK-   74 (101)
T ss_pred             cccce--EEEEEecCCCCceeEEEEEeCCEEEEEEcccccC---CCc-EEEEEEEecccEEEEeCCCCCcCceEEEecC-
Confidence            57999  5558888788999999999999999998543211   111 11233455544322111 1235677888653 


Q ss_pred             CCCcEEEEEecChHHHHHHHHHHHHHHh
Q 005588           98 RDGRAFTLKAETSEDLYEWKTALELALA  125 (689)
Q Consensus        98 ~~~rty~fqAdSeeE~~eWi~AL~~ai~  125 (689)
                        .++|+|+|+|++|+.+||.||+.++.
T Consensus        75 --~rsf~l~A~s~eEk~~W~~ai~~~i~  100 (101)
T cd01219          75 --QRCLELQARTQKEKNDWVQAIFSIID  100 (101)
T ss_pred             --CcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence              59999999999999999999999985

FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain

Probab=99.11  E-value=3.6e-10  Score=105.06  Aligned_cols=76  Identities=26%  Similarity=0.424  Sum_probs=57.7

Q ss_pred             CcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec--------------cCCcceEEEEeCCCCCc
Q 005588           36 SWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--------------EDKKLLTVLFPDGRDGR  101 (689)
Q Consensus        36 ~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~--------------~~kk~~FvI~~~~~~~r  101 (689)
                      +|++|||+|++..|.||+++.++.         +++.|.++....+...              ..+++.|.|..   ..|
T Consensus        32 ~w~kRWFvlr~s~L~Y~~~~~~~~---------~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t---~~R   99 (121)
T cd01254          32 RWQKRWFIVKESFLAYMDDPSSAQ---------ILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITN---SNR   99 (121)
T ss_pred             CCcceeEEEeCCEEEEEcCCCCCc---------eeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEc---CCc
Confidence            699999999999999999988765         4444555443333221              24456677754   489


Q ss_pred             EEEEEecChHHHHHHHHHHHHH
Q 005588          102 AFTLKAETSEDLYEWKTALELA  123 (689)
Q Consensus       102 ty~fqAdSeeE~~eWi~AL~~a  123 (689)
                      +|.|.|+|+.++.+|+++|+.|
T Consensus       100 ~~~l~a~s~~~~~~Wi~~i~~a  121 (121)
T cd01254         100 SLKLKCKSSRKLKQWMASIEDA  121 (121)
T ss_pred             EEEEEeCCHHHHHHHHHHHHhC
Confidence            9999999999999999999864

Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A

Probab=99.07  E-value=1e-09  Score=101.75  Aligned_cols=103  Identities=24%  Similarity=0.399  Sum_probs=60.1

Q ss_pred             EEEEeeeee-------ec-CCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCC-----CceeeeeeCcEEcCCCcceeec--
Q 005588           20 FKSGPLFIS-------SK-GIGWKSWKKRWFILTRTSLVFFKNDPSALPQR-----GGEVNLTLGGIDLNNSGSVVVR--   84 (689)
Q Consensus        20 ~KeG~L~l~-------Kk-G~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~-----~~e~~l~L~~I~L~~~~sv~~~--   84 (689)
                      .|+|||+.+       |+ +.+.++|+..|+||+|+.|++||+........     ..+..-+...|.|..+.+....  
T Consensus         1 ~keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY   80 (119)
T PF15410_consen    1 YKEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDY   80 (119)
T ss_dssp             --EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTB
T ss_pred             CceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCccc
Confidence            479988754       11 12467899999999999999999943211100     1111123445777766554333  


Q ss_pred             cCCcceEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHH
Q 005588           85 EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL  124 (689)
Q Consensus        85 ~~kk~~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai  124 (689)
                      .++++.|.+.+  .+|..|+|||.|.++|.+||++|+.+.
T Consensus        81 ~Kr~~VFrL~~--~dg~e~Lfqa~~~~~m~~Wi~~IN~~A  118 (119)
T PF15410_consen   81 TKRKNVFRLRT--ADGSEYLFQASDEEEMNEWIDAINYAA  118 (119)
T ss_dssp             TTCSSEEEEE---TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred             ccCCeEEEEEe--CCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence            33556777764  579999999999999999999999874

>smart00233 PH Pleckstrin homology domain

Probab=99.04  E-value=2.6e-09  Score=91.76  Aligned_cols=97  Identities=33%  Similarity=0.512  Sum_probs=68.5

Q ss_pred             eEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc----CCcceEEEE
Q 005588           19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE----DKKLLTVLF   94 (689)
Q Consensus        19 V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~----~kk~~FvI~   94 (689)
                      ++++|||+....+ ....|++|||+|.++.|.||++...... ..     ....|+|..+.......    ..+++|.+.
T Consensus         1 ~~~~G~l~~~~~~-~~~~~~~~~~~L~~~~l~~~~~~~~~~~-~~-----~~~~i~l~~~~v~~~~~~~~~~~~~~f~l~   73 (102)
T smart00233        1 VIKEGWLYKKSGG-KKKSWKKRYFVLFNSTLLYYKSEKAKKD-YK-----PKGSIDLSGITVREAPDPDSAKKPHCFEIK   73 (102)
T ss_pred             CceeEEEEEeCCC-ccCCceEEEEEEECCEEEEEeCCCcccc-CC-----CceEEECCcCEEEeCCCCccCCCceEEEEE
Confidence            3689977744432 4678999999999999999998865321 11     23446666553222222    245778776


Q ss_pred             eCCCCCcEEEEEecChHHHHHHHHHHHHHH
Q 005588           95 PDGRDGRAFTLKAETSEDLYEWKTALELAL  124 (689)
Q Consensus        95 ~~~~~~rty~fqAdSeeE~~eWi~AL~~ai  124 (689)
                      ..  ++..|+|+|+|..++..|+.+|+.++
T Consensus        74 ~~--~~~~~~f~~~s~~~~~~W~~~i~~~~  101 (102)
T smart00233       74 TA--DRRSYLLQAESEEEREEWVDALRKAI  101 (102)
T ss_pred             ec--CCceEEEEcCCHHHHHHHHHHHHHhh
Confidence            53  33599999999999999999999875

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.84  E-value=3.6e-09  Score=111.07  Aligned_cols=108  Identities=17%  Similarity=0.315  Sum_probs=85.1

Q ss_pred             CCCCceEEEEeeeeeecCCCCCCcEEEEEEEe-CCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEE
Q 005588           14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILT-RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV   92 (689)
Q Consensus        14 ~~~~~V~KeG~L~l~KkG~~~k~WkKRWFVL~-~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~Fv   92 (689)
                      .....|+|+|  |+.|+|...++|+.|||+|. ++.|.-|+.++....+..    .+|..+.+..|..+.....++..|+
T Consensus        10 ~~~~~vvkEg--WlhKrGE~IknWRpRYF~l~~DG~~~Gyr~kP~~~~~~p----~pLNnF~v~~cq~m~~erPrPntFi   83 (516)
T KOG0690|consen   10 MSQEDVVKEG--WLHKRGEHIKNWRPRYFLLFNDGTLLGYRSKPKEVQPTP----EPLNNFMVRDCQTMKTERPRPNTFI   83 (516)
T ss_pred             cchhhhHHhh--hHhhcchhhhcccceEEEEeeCCceEeeccCCccCCCCc----ccccchhhhhhhhhhccCCCCceEE
Confidence            4456799999  55599999999999999997 479999998766542222    3788888888888777777777777


Q ss_pred             E-EeCCCCCcEEEEEecChHHHHHHHHHHHHHHhhC
Q 005588           93 L-FPDGRDGRAFTLKAETSEDLYEWKTALELALAQA  127 (689)
Q Consensus        93 I-~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~~a  127 (689)
                      | +..++.-...+|++++++++++|+.||+.+....
T Consensus        84 iRcLQWTTVIERTF~ves~~eRq~W~~AIq~vsn~l  119 (516)
T KOG0690|consen   84 IRCLQWTTVIERTFYVESAEERQEWIEAIQAVSNRL  119 (516)
T ss_pred             EEeeeeeeeeeeeeecCCHHHHHHHHHHHHHHhhhh
Confidence            7 3455556678899999999999999999887644

>cd00821 PH Pleckstrin homology (PH) domain

Probab=98.83  E-value=1.5e-08  Score=86.22  Aligned_cols=93  Identities=31%  Similarity=0.538  Sum_probs=63.4

Q ss_pred             EEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC--CcceEEEEeCCC
Q 005588           21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED--KKLLTVLFPDGR   98 (689)
Q Consensus        21 KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~--kk~~FvI~~~~~   98 (689)
                      ++|||+....+. ...|++|||+|.++.|.+|+...... ...     +.+.|++..+........  ..++|.|...  
T Consensus         1 ~~G~l~~~~~~~-~~~w~~~~~~L~~~~l~~~~~~~~~~-~~~-----~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~--   71 (96)
T cd00821           1 KEGYLLKKTGKL-RKGWKRRWFVLFNDLLLYYKKKSSKK-SYK-----PKGSIPLSGAEVEESPDDSGRKNCFEIRTP--   71 (96)
T ss_pred             CcchhhhhhChh-hCCccEEEEEEECCEEEEEECCCCCc-CCC-----CcceEEcCCCEEEECCCcCCCCcEEEEecC--
Confidence            468666433332 47899999999999999998876531 011     234455555322222222  4678888763  


Q ss_pred             CCcEEEEEecChHHHHHHHHHHHH
Q 005588           99 DGRAFTLKAETSEDLYEWKTALEL  122 (689)
Q Consensus        99 ~~rty~fqAdSeeE~~eWi~AL~~  122 (689)
                      +++.|+|+|+|..++..|+.+|+.
T Consensus        72 ~~~~~~~~~~s~~~~~~W~~~l~~   95 (96)
T cd00821          72 DGRSYLLQAESEEEREEWIEALQS   95 (96)
T ss_pred             CCcEEEEEeCCHHHHHHHHHHHhc
Confidence            249999999999999999999975

Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain

Probab=98.81  E-value=2.7e-08  Score=89.30  Aligned_cols=97  Identities=19%  Similarity=0.280  Sum_probs=62.0

Q ss_pred             EEEeeeeeecCCCCCCcEEEEEEEeCC--eEE--EEcCCCCCCCCCCceeeeeeCcEEcCCCcc-eeeccCCcceEEEEe
Q 005588           21 KSGPLFISSKGIGWKSWKKRWFILTRT--SLV--FFKNDPSALPQRGGEVNLTLGGIDLNNSGS-VVVREDKKLLTVLFP   95 (689)
Q Consensus        21 KeG~L~l~KkG~~~k~WkKRWFVL~~~--~L~--YYKd~~~~~p~~~~e~~l~L~~I~L~~~~s-v~~~~~kk~~FvI~~   95 (689)
                      |+||||++.+++....|.++||...+.  .+.  -+...... +.++. + .....+.|..|.. .....++++||.|+.
T Consensus         1 k~GYLy~~~k~~~~~~Wvk~y~~~~~~~~~f~m~~~~q~s~~-~~~g~-v-~~~e~~~l~sc~~r~~~~~dRRFCFei~~   77 (104)
T cd01249           1 KEGYLYMQEKSKFGGSWTKYYCTYSKETRIFTMVPFNQKTKT-DMKGA-V-AQDETLTLKSCSRRKTESIDKRFCFDVEV   77 (104)
T ss_pred             CCceEEEEcCCCCCCeEEEEEEEEEcCCcEEEEEeccccccc-ccCcc-c-ccceEEeeeeccccccCCccceeeEeeee
Confidence            589999998877777899999999874  321  22222111 11111 0 0111233333332 123357899999977


Q ss_pred             CCCCCcEEEEEecChHHHHHHHHHHH
Q 005588           96 DGRDGRAFTLKAETSEDLYEWKTALE  121 (689)
Q Consensus        96 ~~~~~rty~fqAdSeeE~~eWi~AL~  121 (689)
                      ..++ .+++|||+++.++..||.|+.
T Consensus        78 ~~~~-~~~~lQA~Se~~~~~Wi~A~d  102 (104)
T cd01249          78 EEKP-GVITMQALSEKDRRLWIEAMD  102 (104)
T ss_pred             cCCC-CeEEEEecCHHHHHHHHHhhc
Confidence            5444 479999999999999999985

Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain

Probab=98.80  E-value=2.4e-08  Score=87.78  Aligned_cols=99  Identities=32%  Similarity=0.451  Sum_probs=71.8

Q ss_pred             eEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEe-CC
Q 005588           19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP-DG   97 (689)
Q Consensus        19 V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~-~~   97 (689)
                      |++.|||-+..-|.....=|.|||||+..+|+||++..+..+++.    ++|.++.+.....-  --.+++||.+.. ..
T Consensus         1 virkgwl~~~n~~~m~ggsK~~WFVLt~~~L~wykd~eeKE~kyi----lpLdnLk~Rdve~g--f~sk~~~FeLfnpd~   74 (110)
T cd01256           1 VIRKGWLSISNVGIMKGGSKDYWFVLTSESLSWYKDDEEKEKKYM----LPLDGLKLRDIEGG--FMSRNHKFALFYPDG   74 (110)
T ss_pred             CeeeeeEEeeccceecCCCcceEEEEecceeeeecccccccccce----eeccccEEEeeccc--ccCCCcEEEEEcCcc
Confidence            578898877766655555699999999999999999988875543    35666555543321  134668888863 21


Q ss_pred             ----CCCcEEEEEecChHHHHHHHHHHHHH
Q 005588           98 ----RDGRAFTLKAETSEDLYEWKTALELA  123 (689)
Q Consensus        98 ----~~~rty~fqAdSeeE~~eWi~AL~~a  123 (689)
                          ++-++.-|.|+|.++++.|...+-+|
T Consensus        75 rnvykd~k~lel~~~~~e~vdswkasflra  104 (110)
T cd01256          75 RNVYKDYKQLELGCETLEEVDSWKASFLRA  104 (110)
T ss_pred             cccccchheeeecCCCHHHHHHHHHHHHhc
Confidence                13467889999999999999887554

Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd00900 PH-like Pleckstrin homology-like domain

Probab=98.79  E-value=4.6e-08  Score=83.80  Aligned_cols=93  Identities=29%  Similarity=0.482  Sum_probs=63.2

Q ss_pred             EEeeeeeecCC--CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc---CCcceEEEEeC
Q 005588           22 SGPLFISSKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE---DKKLLTVLFPD   96 (689)
Q Consensus        22 eG~L~l~KkG~--~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~---~kk~~FvI~~~   96 (689)
                      +|||.+.....  ....|++|||+|.+..|.||+.+.......        +.+++.... +....   ...++|.+...
T Consensus         2 ~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~~~--------~~~~l~~~~-v~~~~~~~~~~~~F~i~~~   72 (99)
T cd00900           2 EGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEIKP--------GSIPLSEIS-VEEDPDGSDDPNCFAIVTK   72 (99)
T ss_pred             ccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcCCC--------CEEEccceE-EEECCCCCCCCceEEEECC
Confidence            58665333332  247899999999999999999987654321        123333322 21211   35678888753


Q ss_pred             CCCCcEEEEEecChHHHHHHHHHHHHH
Q 005588           97 GRDGRAFTLKAETSEDLYEWKTALELA  123 (689)
Q Consensus        97 ~~~~rty~fqAdSeeE~~eWi~AL~~a  123 (689)
                      ....+.|+|+|++.+++..|+.+|+.+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~W~~al~~~   99 (99)
T cd00900          73 DRGRRVFVFQADSEEEAQEWVEALQQA   99 (99)
T ss_pred             CCCcEEEEEEcCCHHHHHHHHHHHhcC
Confidence            223789999999999999999999853

Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.

>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain

Probab=98.68  E-value=1.9e-08  Score=89.15  Aligned_cols=98  Identities=18%  Similarity=0.370  Sum_probs=66.9

Q ss_pred             EEEEeeeeeecCC-CCCCcEEEEEEEeCC-----eEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-------ccC
Q 005588           20 FKSGPLFISSKGI-GWKSWKKRWFILTRT-----SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-------RED   86 (689)
Q Consensus        20 ~KeG~L~l~KkG~-~~k~WkKRWFVL~~~-----~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~-------~~~   86 (689)
                      .++||||  +.|+ .+|.||||||+|.+-     .+.-|+.++.     .+...+.|.+..+.-+.....       -..
T Consensus         3 k~sGyL~--k~Gg~~~KkWKKRwFvL~qvsQYtfamcsy~ekks-----~P~e~~qldGyTvDy~~~~~~~~~~~~~~~g   75 (117)
T cd01234           3 KHCGYLY--AIGKNVWKKWKKRFFVLVQVSQYTFAMCSYREKKA-----EPTEFIQLDGYTVDYMPESDPDPNSELSLQG   75 (117)
T ss_pred             ceeEEEE--eccchhhhhhheeEEEEEchhHHHHHHHhhhhhcC-----CchhheeecceEEeccCCCCCCccccccccc
Confidence            4899777  7776 799999999999974     3444554432     233345677777766544221       123


Q ss_pred             CcceEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHHhhC
Q 005588           87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA  127 (689)
Q Consensus        87 kk~~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~~a  127 (689)
                      .+++|--.-   .|....|..+++.|+.-|++|+=+|..++
T Consensus        76 g~~ff~avk---egd~~~fa~~de~~r~lwvqa~yratgqs  113 (117)
T cd01234          76 GRHFFNAVK---EGDELKFATDDENERHLWVQAMYRATGQS  113 (117)
T ss_pred             chhhhheec---cCcEEEEeccchHHHHHHHHHHHHHcCcc
Confidence            445554332   37899999999999999999999887543

CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=98.67  E-value=1.8e-08  Score=113.24  Aligned_cols=169  Identities=15%  Similarity=0.170  Sum_probs=141.2

Q ss_pred             CCCCCCcccccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHH----HHHHhh-cCCccCCCCCCcc
Q 005588          158 KRPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDR----RVQEYE-QGKTEFSADEDAH  232 (689)
Q Consensus       158 ~~~~~~~vFG~pL~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~----L~~~ld-~g~~~~~~~~Dvh  232 (689)
                      ...+...-||+||+..|.+.+.+|..+......|...+..++++||..-...-+.+    ....+. .|.....+...+|
T Consensus       409 e~~l~kv~fdaPlS~~c~d~gk~prPlq~~~tll~kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~gr~vdv~sspv~  488 (741)
T KOG4724|consen  409 ESELAKVPFDAPLSVFCADQGKTPRPLQIQSTLLKKKNPATPNVFPRTNDEALVLKAFSSSSLDDSSDGRPVDVPSSPVH  488 (741)
T ss_pred             hhhhhhCcCCCchhhcccccCCCCCChhhhhHHHHhcCCCCCccCCCccchhhhhhcccccchhhhccCCcccCCCCCch
Confidence            34455678999999999999999999988888999999999999998544333222    222222 3666666777999


Q ss_pred             cchhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHH-------HHhccCChhHHHHHHHHHHHHHHhhcccC
Q 005588          233 VIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRS-------AILETFPEPNRRLLQRILRMMHTISSHAH  305 (689)
Q Consensus       233 ~VAslLK~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~-------lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~  305 (689)
                      ++++++|.|+|.+|..++..+.+.+++++.....++++.++++.       ....+.|..+..+....+.-.+.+..++.
T Consensus       489 taasv~KdfnRKtpRgi~sr~ihke~~ea~~lq~EedrtEaLk~~~gks~~fv~~~~Prg~s~~~shsvf~~~i~S~nse  568 (741)
T KOG4724|consen  489 TAASVHKDFNRKTPRGIPSREIHKESMEATFLQHEEDRTEALKAGSGKSQDFVRDHVPRGGSNVRKHSVFAGRIVSENSE  568 (741)
T ss_pred             HHHHHHHHhhhhcCCCccchHHHHHhhhhhhccchHHHHHHHHhhcCCcccccccCCCCCcccccccccccceecccccc
Confidence            99999999999999999999999999999999998999999997       13358899989888888888888999999


Q ss_pred             CCCCCccchhhhhcccccCCC
Q 005588          306 ENRMTPSAVAACMAPLLLRPL  326 (689)
Q Consensus       306 ~NkMta~NLAivfaP~Llr~~  326 (689)
                      .+.|+..|++.|..|+++...
T Consensus       569 ~~s~dsSn~~~csrpn~~tvd  589 (741)
T KOG4724|consen  569 ETSNDSSNPGFCSRPNALTVD  589 (741)
T ss_pred             cccccccccCCCCCccccchh
Confidence            999999999999999998744

>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain

Probab=98.61  E-value=3.7e-07  Score=82.02  Aligned_cols=95  Identities=18%  Similarity=0.198  Sum_probs=59.9

Q ss_pred             eEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc--CCcceEEEEeC
Q 005588           19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE--DKKLLTVLFPD   96 (689)
Q Consensus        19 V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~--~kk~~FvI~~~   96 (689)
                      .+++|+|.  |.+. ...|+|+||.+.+..||+.+....     ..... ..+.|++..........  ..+++|.|.. 
T Consensus         2 ~ikEG~L~--K~~~-k~~~~R~~FLFnD~LlY~~~~~~~-----~~~y~-~~~~i~L~~~~V~~~~~~~~~~~~F~I~~-   71 (99)
T cd01220           2 FIRQGCLL--KLSK-KGLQQRMFFLFSDLLLYTSKSPTD-----QNSFR-ILGHLPLRGMLTEESEHEWGVPHCFTIFG-   71 (99)
T ss_pred             eeeEEEEE--EEeC-CCCceEEEEEccceEEEEEeecCC-----CceEE-EEEEEEcCceEEeeccCCcCCceeEEEEc-
Confidence            58999665  4443 345777666666655555443211     11111 23445555443211222  3457888875 


Q ss_pred             CCCCcEEEEEecChHHHHHHHHHHHHHHh
Q 005588           97 GRDGRAFTLKAETSEDLYEWKTALELALA  125 (689)
Q Consensus        97 ~~~~rty~fqAdSeeE~~eWi~AL~~ai~  125 (689)
                        .++.|.|+|.|++|+.+||.+|+.+|.
T Consensus        72 --~~ks~~l~A~s~~Ek~~Wi~~i~~aI~   98 (99)
T cd01220          72 --GQCAITVAASTRAEKEKWLADLSKAIA   98 (99)
T ss_pred             --CCeEEEEECCCHHHHHHHHHHHHHHhh
Confidence              379999999999999999999999985

Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain

Probab=98.59  E-value=5.7e-07  Score=82.38  Aligned_cols=104  Identities=15%  Similarity=0.167  Sum_probs=74.2

Q ss_pred             EEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCC--CCceeeeee--CcEEcCCCcc--ee--eccCCcceE
Q 005588           20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQ--RGGEVNLTL--GGIDLNNSGS--VV--VREDKKLLT   91 (689)
Q Consensus        20 ~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~--~~~e~~l~L--~~I~L~~~~s--v~--~~~~kk~~F   91 (689)
                      ..+|||.+.+.++..++|+++|+||.+..|++|..+.+...+  ......+++  +.+.+...+.  +.  ...+-+++|
T Consensus         3 ~~EGwvkvP~~~~~krGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~If   82 (122)
T cd01243           3 AYEGHVKIPKPGGVKKGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPCIF   82 (122)
T ss_pred             cceeeEeccCCCCcccCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCeEE
Confidence            468988888887777899999999999999999877654332  223344455  3455544333  21  224455778


Q ss_pred             EEEe----CCCCCcEEEEEecChHHHHHHHHHHHHH
Q 005588           92 VLFP----DGRDGRAFTLKAETSEDLYEWKTALELA  123 (689)
Q Consensus        92 vI~~----~~~~~rty~fqAdSeeE~~eWi~AL~~a  123 (689)
                      .|+.    ...++.+.+|-|+++.|.+.|+.||...
T Consensus        83 ~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l  118 (122)
T cd01243          83 RVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL  118 (122)
T ss_pred             EEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence            7765    2335689999999999999999999865

MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]

Probab=98.59  E-value=1.8e-08  Score=116.32  Aligned_cols=95  Identities=26%  Similarity=0.493  Sum_probs=76.5

Q ss_pred             CCceEEEEeeeeeecCCCCCCcEEEEEEEeC--CeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee---c-cCCcc
Q 005588           16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTR--TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV---R-EDKKL   89 (689)
Q Consensus        16 ~~~V~KeG~L~l~KkG~~~k~WkKRWFVL~~--~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~---~-~~kk~   89 (689)
                      ..+.+.+||||  |+|...|.||.|||||..  ..|+||.+-.++.|         -|.|++....+|..   + .+.+-
T Consensus      1631 teNr~~eG~Ly--KrGA~lK~Wk~RwFVLd~~khqlrYYd~~edt~p---------kG~IdLaevesv~~~~~k~vdekg 1699 (1732)
T KOG1090|consen 1631 TENRIPEGYLY--KRGAKLKLWKPRWFVLDPDKHQLRYYDDFEDTKP---------KGCIDLAEVESVALIGPKTVDEKG 1699 (1732)
T ss_pred             ccccCcccchh--hcchhhcccccceeEecCCccceeeecccccccc---------cchhhhhhhhhhcccCccccCccc
Confidence            44456699888  999999999999999986  59999999888874         45677777666544   1 34556


Q ss_pred             eEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHH
Q 005588           90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL  124 (689)
Q Consensus        90 ~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai  124 (689)
                      +|.+..   ..|+|.|+|.+....++|+..|+.++
T Consensus      1700 ffdlkt---t~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1700 FFDLKT---TNRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred             eeeeeh---hhHHHHHHhccchHHHHHHHHHHHhh
Confidence            777765   37999999999999999999999876

>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain

Probab=98.59  E-value=1.3e-07  Score=85.44  Aligned_cols=101  Identities=24%  Similarity=0.323  Sum_probs=62.6

Q ss_pred             EEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCc--EEcCCCcceeeccCCcceEEEEeCCC
Q 005588           21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGG--IDLNNSGSVVVREDKKLLTVLFPDGR   98 (689)
Q Consensus        21 KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~--I~L~~~~sv~~~~~kk~~FvI~~~~~   98 (689)
                      .+|+||++.-|  .|+|||+||+|++.-|+|+...+...++... .-..+.+  |-........-.....++|++.+...
T Consensus         2 ~~g~LylK~~g--kKsWKk~~f~LR~SGLYy~~Kgksk~srdL~-cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~~   78 (114)
T cd01259           2 MEGPLYLKADG--KKSWKKYYFVLRSSGLYYFPKEKTKNTRDLA-CLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVGD   78 (114)
T ss_pred             ccceEEEccCC--CccceEEEEEEeCCeeEEccCCCcCCHHHHH-HHHhcccCcEEEEechhhccCCCCCceEEEecccc
Confidence            47999977655  5899999999999999888554433322100 0000111  11111111112234558999976221


Q ss_pred             ----CCcEEEEEecChHHHHHHHHHHHHHH
Q 005588           99 ----DGRAFTLKAETSEDLYEWKTALELAL  124 (689)
Q Consensus        99 ----~~rty~fqAdSeeE~~eWi~AL~~ai  124 (689)
                          ..-.-+|||+++..+..|+.|||-+.
T Consensus        79 q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K  108 (114)
T cd01259          79 QSKGSQSIKYLCAEDLPTLDRWLTAIRIAK  108 (114)
T ss_pred             CcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence                23468899999999999999999664

Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain

Probab=98.43  E-value=2.7e-06  Score=76.96  Aligned_cols=103  Identities=13%  Similarity=0.271  Sum_probs=71.5

Q ss_pred             EEEeeeeeecCCC--CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeC-cEEcCCCcc--ee--eccCCcceEEE
Q 005588           21 KSGPLFISSKGIG--WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLG-GIDLNNSGS--VV--VREDKKLLTVL   93 (689)
Q Consensus        21 KeG~L~l~KkG~~--~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~-~I~L~~~~s--v~--~~~~kk~~FvI   93 (689)
                      .+|||-+.+.++.  .++|++.|+||.+..|++|..+.+...+. +...+.++ .+++...++  |.  ...+-++.|.|
T Consensus         2 lEGwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~~~~-p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I   80 (112)
T cd01242           2 MEGWLSLPNRTNKSRKPGWKKQYVVVSSRKILFYNDEQDKENST-PSMILDIDKLFHVRPVTQGDVYRADAKEIPKIFQI   80 (112)
T ss_pred             cceeEEccCCCCccccCCceEEEEEEeCCEEEEEecCccccCCC-cEEEEEccceeeeecccHHHeeecCcccCCeEEEE
Confidence            5897766677554  46899999999999999998876653222 33333333 244343333  21  22445577888


Q ss_pred             EeCCCCCcEEEEEecChHHHHHHHHHHHHHHh
Q 005588           94 FPDGRDGRAFTLKAETSEDLYEWKTALELALA  125 (689)
Q Consensus        94 ~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~  125 (689)
                      +.. +.+++.+|-|+++.|.+.|+.+|.+-|.
T Consensus        81 ~~~-~~~~~lllLA~s~~ek~kWV~~L~~~~~  111 (112)
T cd01242          81 LYA-NEARDLLLLAPQTDEQNKWVSRLVKKIP  111 (112)
T ss_pred             EeC-CccceEEEEeCCchHHHHHHHHHHHhcc
Confidence            763 4469999999999999999999998763

Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=98.36  E-value=4.9e-07  Score=105.08  Aligned_cols=104  Identities=25%  Similarity=0.387  Sum_probs=77.7

Q ss_pred             CCceEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC------Ccc
Q 005588           16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED------KKL   89 (689)
Q Consensus        16 ~~~V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~------kk~   89 (689)
                      +-.|..-|||++..-+.++..|+||||+|.|+.+.|||.+.+.+.+ +     +++.|+|+.|+.-....-      +.+
T Consensus       987 ~idVEYrGFLtmfed~sgfGaWhRyWc~L~gg~I~fWk~PdDEkrK-~-----Pig~IDLt~CTsq~ie~a~rdicar~n 1060 (1116)
T KOG3640|consen  987 AIDVEYRGFLTMFEDGSGFGAWHRYWCALHGGEIKFWKYPDDEKRK-V-----PIGQIDLTKCTSQSIEEARRDICARPN 1060 (1116)
T ss_pred             ccceeeeeeeeeeeccCCCchhhhhhHHhcCCeeeeecCcchhccc-C-----cceeeehhhhhccccccchhhhccCCc
Confidence            3457778999999888888999999999999999999998887632 2     678899999888433221      122


Q ss_pred             eEEEE-e----CCC-----CCc-EEEEEecChHHHHHHHHHHHHHHh
Q 005588           90 LTVLF-P----DGR-----DGR-AFTLKAETSEDLYEWKTALELALA  125 (689)
Q Consensus        90 ~FvI~-~----~~~-----~~r-ty~fqAdSeeE~~eWi~AL~~ai~  125 (689)
                      -|-|. .    .++     ..| ...|.|+|.++++.|+.+|..++-
T Consensus      1061 tFhie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~ 1107 (1116)
T KOG3640|consen 1061 TFHIEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLK 1107 (1116)
T ss_pred             eeEEEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHH
Confidence            23333 1    011     112 678999999999999999999874

>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A

Probab=98.25  E-value=7.1e-06  Score=74.31  Aligned_cols=92  Identities=24%  Similarity=0.296  Sum_probs=59.8

Q ss_pred             CCCceEEEEeeeeeecCCCCCCcEEEEEEEeCC-eEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEE
Q 005588           15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRT-SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL   93 (689)
Q Consensus        15 ~~~~V~KeG~L~l~KkG~~~k~WkKRWFVL~~~-~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI   93 (689)
                      ++..++++|++.  |+.+.+  +++|||+|+++ .|+|+..... .         .-|.|.++....+... ..+.|++.
T Consensus         9 ~ge~Il~~g~v~--K~kgl~--~kkR~liLTd~PrL~Yvdp~~~-~---------~KGeI~~~~~l~v~~k-~~~~F~I~   73 (104)
T PF14593_consen    9 PGELILKQGYVK--KRKGLF--AKKRQLILTDGPRLFYVDPKKM-V---------LKGEIPWSKELSVEVK-SFKTFFIH   73 (104)
T ss_dssp             -T--EEEEEEEE--EEETTE--EEEEEEEEETTTEEEEEETTTT-E---------EEEEE--STT-EEEEC-SSSEEEEE
T ss_pred             CCCeEEEEEEEE--EeeceE--EEEEEEEEccCCEEEEEECCCC-e---------ECcEEecCCceEEEEc-cCCEEEEE
Confidence            367899999665  444333  89999999987 7766644322 1         3366888877666553 33456676


Q ss_pred             EeCCCCCcEEEEEecChHHHHHHHHHHHHHHhh
Q 005588           94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQ  126 (689)
Q Consensus        94 ~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~~  126 (689)
                      ++    +|+|+|.. .......|+++|+.+..+
T Consensus        74 tp----~RtY~l~d-~~~~A~~W~~~I~~~~~~  101 (104)
T PF14593_consen   74 TP----KRTYYLED-PEGNAQQWVEAIEEVKKQ  101 (104)
T ss_dssp             ET----TEEEEEE--TTS-HHHHHHHHHHHHHH
T ss_pred             CC----CcEEEEEC-CCCCHHHHHHHHHHHHHH
Confidence            76    89999988 555688899999998753

>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation []

Probab=98.21  E-value=8.7e-06  Score=90.30  Aligned_cols=146  Identities=12%  Similarity=0.168  Sum_probs=117.7

Q ss_pred             cHHHHHHHHHHHhcCCCcCCee---ecCCCHHHHHHHHHHh-hcCCcc----------CCCCCCcccchhhHHHHhhhCC
Q 005588          181 PSFLEKALRFLEKFGTKVEGIL---RQAADVEEVDRRVQEY-EQGKTE----------FSADEDAHVIGDCVKHVLRELP  246 (689)
Q Consensus       181 P~iL~~~i~~Le~~Gl~~EGIF---R~sG~~~~v~~L~~~l-d~g~~~----------~~~~~Dvh~VAslLK~fLReLP  246 (689)
                      =.+|..|...|..+|+++++||   |..-+...++.+...| ..+...          .....++|+++++||-.+..||
T Consensus         9 ~~li~~~t~elK~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~RLp   88 (420)
T PF08101_consen    9 KDLIHACTEELKSRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSRLP   88 (420)
T ss_pred             HHHHHHHHHHHHhccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHHcC
Confidence            3478888999999999999998   7777888888877755 333211          1234699999999999999999


Q ss_pred             CCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCC-hhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccCC
Q 005588          247 SSPVPASCCTALLEAYKIDRKEARISAMRSAILETFP-EPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRP  325 (689)
Q Consensus       247 ePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP-~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr~  325 (689)
                      ..+|+.+.|..|...-+..+  --..++..+|...|| +.|..++.-++.+|..|+.|+..|.|+..-|+-.+|+-+|-.
T Consensus        89 ~gvVgW~~Y~~Fk~~E~~~~--yp~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~NglsgrKlsrm~g~WaF~~  166 (420)
T PF08101_consen   89 GGVVGWDSYEEFKRREREAG--YPRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGRKLSRMAGIWAFGH  166 (420)
T ss_pred             CCccccHHHHHHHHHHhhcC--CChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHCCC
Confidence            99999999999987643322  234566666666674 667889999999999999999999999999999999999987


Q ss_pred             CCC
Q 005588          326 LLA  328 (689)
Q Consensus       326 ~~~  328 (689)
                      ...
T Consensus       167 ~~~  169 (420)
T PF08101_consen  167 PDF  169 (420)
T ss_pred             CCc
Confidence            643

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=97.96  E-value=1.7e-05  Score=90.46  Aligned_cols=114  Identities=26%  Similarity=0.361  Sum_probs=76.2

Q ss_pred             CCceEEEEeeeeeecCC---CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec----cCCc
Q 005588           16 SNTVFKSGPLFISSKGI---GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR----EDKK   88 (689)
Q Consensus        16 ~~~V~KeG~L~l~KkG~---~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~----~~kk   88 (689)
                      ...|.|+|.++.+-+|.   +.+++|||||.|++..|.|.|++...          +...|++.+...|..-    .+.+
T Consensus       562 ~p~v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~~q----------~~~~Ipl~nI~avEklee~sF~~k  631 (800)
T KOG2059|consen  562 EPVVLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPGKQ----------PIYTIPLSNIRAVEKLEEKSFKMK  631 (800)
T ss_pred             CCceecccceEeccccccchhhhhhhheEEEeccceeEEecCCccC----------cccceeHHHHHHHHHhhhhccCCC
Confidence            34566666555443332   24678999999999999999997654          3556777776664321    2333


Q ss_pred             ce-EEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHHhhCCcchhccCccccccCCC
Q 005588           89 LL-TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGHNGIFRNDT  144 (689)
Q Consensus        89 ~~-FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~~aP~~~~~~g~~~~f~~~~  144 (689)
                      ++ .+|..    .|+.||||.+..|..+|+++|+++...+++.- ..-|.|.|+.+.
T Consensus       632 nv~qVV~~----drtly~Q~~n~vEandWldaL~kvs~~N~~rL-as~HPgaF~s~~  683 (800)
T KOG2059|consen  632 NVFQVVHT----DRTLYVQAKNCVEANDWLDALRKVSCCNQNRL-ASYHPGAFRSDS  683 (800)
T ss_pred             ceEEEEec----CcceeEecCCchHHHHHHHHHHHHhccCcchh-hhcCCcccccCc
Confidence            44 45544    38999999999999999999999875433211 112456676654

>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]

Probab=97.94  E-value=2e-05  Score=87.37  Aligned_cols=106  Identities=23%  Similarity=0.274  Sum_probs=65.8

Q ss_pred             CceEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeC--cEEcCCCcceeeccCCcceEEEE
Q 005588           17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLG--GIDLNNSGSVVVREDKKLLTVLF   94 (689)
Q Consensus        17 ~~V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~--~I~L~~~~sv~~~~~kk~~FvI~   94 (689)
                      +...++||||++..|  +|+|||.||||+..-|||+...+...|+...-+. .++  .|...-.....-+....++|.|.
T Consensus       315 ~~pei~GfL~~K~dg--kKsWKk~yf~LR~SGLYys~K~tsk~~r~Lq~l~-~~~~snVYt~i~~rKkyksPTd~~f~~K  391 (622)
T KOG3751|consen  315 SPPEIQGFLYLKEDG--KKSWKKHYFVLRRSGLYYSTKGTSKEPRHLQCLA-DLHSSNVYTGIGGRKKYKSPTDYGFCIK  391 (622)
T ss_pred             CCccccceeeecccc--cccceeEEEEEecCcceEccCCCCCCchhhHHHH-hcccCceEEeecchhccCCCCCceEEee
Confidence            446789999966555  6899999999999999998666555543211000 011  11111111111112334777776


Q ss_pred             eCCC---CCcEEEEEecChHHHHHHHHHHHHHHh
Q 005588           95 PDGR---DGRAFTLKAETSEDLYEWKTALELALA  125 (689)
Q Consensus        95 ~~~~---~~rty~fqAdSeeE~~eWi~AL~~ai~  125 (689)
                      +..-   ..-.-+|||+++..+..|+.|||-+..
T Consensus       392 ~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~Ky  425 (622)
T KOG3751|consen  392 PNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLLKY  425 (622)
T ss_pred             eccccCcccceeeeecccchhHHHHHHHHHHHHH
Confidence            6221   123568999999999999999997653

>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.81  E-value=7.2e-06  Score=91.11  Aligned_cols=123  Identities=22%  Similarity=0.297  Sum_probs=74.4

Q ss_pred             CCCCCCCceEEEEeeeee-------ecC-CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCc-EEcCCCcce
Q 005588           11 PRPGASNTVFKSGPLFIS-------SKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGG-IDLNNSGSV   81 (689)
Q Consensus        11 ~~~~~~~~V~KeG~L~l~-------KkG-~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~-I~L~~~~sv   81 (689)
                      ..+.++-.+.|.|+|-.+       ||. .++++||.-|.||+|-.||+-|++-...  +.-.. -.|.. |.+...-..
T Consensus       498 v~~dpsa~~Yk~G~L~RK~had~DgkKTPrGkRgWk~fya~LkG~vLYlqkDey~p~--kalse-~~lknavsvHHALAt  574 (774)
T KOG0932|consen  498 VPPDPSAATYKSGFLARKYHADMDGKKTPRGKRGWKMFYAVLKGMVLYLQKDEYKPG--KALSE-SDLKNAVSVHHALAT  574 (774)
T ss_pred             CCCCCCchhhhhhhhhhhhhccccCCcCCccchhHHHHHHHHhhheEEeeccccCcc--cchhh-hhhhhhhhhhhhhcC
Confidence            333456778999977533       221 2367899999999999999988754221  10000 01111 222221111


Q ss_pred             eeccCCcceEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHHh--hCCcchhccCc
Q 005588           82 VVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA--QAPSAALVMGH  136 (689)
Q Consensus        82 ~~~~~kk~~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~--~aP~~~~~~g~  136 (689)
                      ...+.+|..||+..++.+.|+|+|||.+.++|+.||..|.-+.+  .||.-+...|.
T Consensus       575 ~AtdY~KKp~Vf~lrtAdwrv~LFQaps~eEmqsWi~rIN~vAA~fSaPpfPaaV~S  631 (774)
T KOG0932|consen  575 PATDYSKKPHVFKLRTADWRVFLFQAPSQEEMQSWIERINLVAAAFSAPPFPAAVGS  631 (774)
T ss_pred             CCcccccCCceEEEEeccceeEEEeCCCHHHHHHHHHHHHHHHHhccCCCCcccccc
Confidence            12233444455555566899999999999999999999998764  44544433333

>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain

Probab=97.73  E-value=0.0001  Score=67.21  Aligned_cols=90  Identities=17%  Similarity=0.228  Sum_probs=61.2

Q ss_pred             EEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec-------cCCcceEE
Q 005588           20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-------EDKKLLTV   92 (689)
Q Consensus        20 ~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~-------~~kk~~Fv   92 (689)
                      +||||+-  --...-+.|||+|++|+...|.+|+++...+         ....|+|.....|...       ....+||.
T Consensus         1 lkEGWmV--HyT~~d~~rKRhYWrLDsK~Itlf~~e~~sk---------yyKeIPLsEIl~V~~~~~~~~~~~~~~hcFE   69 (117)
T cd01239           1 LKEGWMV--HYTSSDNRRKKHYWRLDSKAITLYQEESGSR---------YYKEIPLAEILSVSSNNGDSVLAKHPPHCFE   69 (117)
T ss_pred             CccceEE--EEecCccceeeeEEEecCCeEEEEEcCCCCe---------eeEEeehHHheEEeccCCCcCCCCCCCcEEE
Confidence            4799663  2223346799999999999999999987665         3444555444443221       34568999


Q ss_pred             EEeCCCCCcEEEEEecC--------------------hHHHHHHHHHHHHH
Q 005588           93 LFPDGRDGRAFTLKAET--------------------SEDLYEWKTALELA  123 (689)
Q Consensus        93 I~~~~~~~rty~fqAdS--------------------eeE~~eWi~AL~~a  123 (689)
                      |.+   ...+||...+.                    ....+-|-+||++|
T Consensus        70 i~T---~~~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA  117 (117)
T cd01239          70 IRT---TTNVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA  117 (117)
T ss_pred             EEe---cCEEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence            976   37899997752                    23458888888764

Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PLN00188 enhanced disease resistance protein (EDR2); Provisional

Probab=97.67  E-value=0.00018  Score=83.58  Aligned_cols=104  Identities=19%  Similarity=0.285  Sum_probs=72.8

Q ss_pred             CceEEEEeeeeeecC-CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC----CcceE
Q 005588           17 NTVFKSGPLFISSKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED----KKLLT   91 (689)
Q Consensus        17 ~~V~KeG~L~l~KkG-~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~----kk~~F   91 (689)
                      ..+.++||||.-... .+..--++|||||.+..|.|||.++...       .++++...+..++-|.....    .+.+|
T Consensus         2 ~~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~-------~~pirs~~id~~~rVed~Gr~~~~g~~~y   74 (719)
T PLN00188          2 SKVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDN-------QVPIKTLLIDGNCRVEDRGLKTHHGHMVY   74 (719)
T ss_pred             CcceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccc-------cccceeeccCCCceEeecCceEEcCceEE
Confidence            457899999966443 3344569999999999999999976543       23455555555444433221    23456


Q ss_pred             EEEe--CCCCCcEEEEEecChHHHHHHHHHHHHHHhhC
Q 005588           92 VLFP--DGRDGRAFTLKAETSEDLYEWKTALELALAQA  127 (689)
Q Consensus        92 vI~~--~~~~~rty~fqAdSeeE~~eWi~AL~~ai~~a  127 (689)
                      ++..  .....+...|.|-+.+|...|+.||+.|+.++
T Consensus        75 vl~~Yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~  112 (719)
T PLN00188         75 VLSVYNKKEKYHRITMAAFNIQEALIWKEKIESVIDQH  112 (719)
T ss_pred             EEEEecCCCccccEEEecCCHHHHHHHHHHHHHHHhhh
Confidence            6654  33345678999999999999999999999865

>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain

Probab=97.67  E-value=0.00038  Score=63.20  Aligned_cols=98  Identities=18%  Similarity=0.192  Sum_probs=61.4

Q ss_pred             ceEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCC
Q 005588           18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG   97 (689)
Q Consensus        18 ~V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~   97 (689)
                      ..+++|-|.  |-.  ++.-+.|||.|-++.|+|-+-.... .+......++|.++.+.+...   ....+..|.|..  
T Consensus         3 ~li~eG~L~--K~~--rk~~~~R~ffLFnD~LvY~~~~~~~-~~~~~~~~i~L~~~~v~~~~d---~~~~~n~f~I~~--   72 (104)
T cd01218           3 VLVGEGVLT--KMC--RKKPKQRQFFLFNDILVYGNIVISK-KKYNKQHILPLEGVQVESIED---DGIERNGWIIKT--   72 (104)
T ss_pred             EEEecCcEE--Eee--cCCCceEEEEEecCEEEEEEeecCC-ceeeEeeEEEccceEEEecCC---cccccceEEEec--
Confidence            468899665  333  4557889999999999885321110 000111223444444332211   112345566654  


Q ss_pred             CCCcEEEEEecChHHHHHHHHHHHHHHhh
Q 005588           98 RDGRAFTLKAETSEDLYEWKTALELALAQ  126 (689)
Q Consensus        98 ~~~rty~fqAdSeeE~~eWi~AL~~ai~~  126 (689)
                       ..+.|.++|+|++|..+|+.+|..|+.+
T Consensus        73 -~~kSf~v~A~s~~eK~eWl~~i~~ai~~  100 (104)
T cd01218          73 -PTKSFAVYAATETEKREWMLHINKCVTD  100 (104)
T ss_pred             -CCeEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence             3799999999999999999999999864

Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain

Probab=97.59  E-value=0.00019  Score=65.36  Aligned_cols=96  Identities=20%  Similarity=0.308  Sum_probs=61.0

Q ss_pred             EEeeeeeecC--CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcC-------CCcc-eeeccCCcceE
Q 005588           22 SGPLFISSKG--IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLN-------NSGS-VVVREDKKLLT   91 (689)
Q Consensus        22 eG~L~l~KkG--~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~-------~~~s-v~~~~~kk~~F   91 (689)
                      -|||.-+-.+  ...+.|+.+|++|++..|++|+..+....    ...-++...+|.       .... ......+.+||
T Consensus         2 mGW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e----~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F   77 (108)
T cd01258           2 IGWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVE----DWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCF   77 (108)
T ss_pred             ceecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHH----HHhChhhhChhHHhhhheeccCCccCcCCCCceEE
Confidence            4855422222  24689999999999999999998876432    111122222222       1010 00012555788


Q ss_pred             EEEeCCCCCcEEEEEecChHHHHHHHHHHHH
Q 005588           92 VLFPDGRDGRAFTLKAETSEDLYEWKTALEL  122 (689)
Q Consensus        92 vI~~~~~~~rty~fqAdSeeE~~eWi~AL~~  122 (689)
                      .+...+. -..++|..++..|+..|..||.+
T Consensus        78 ~irtg~~-vesh~fsVEt~~dL~~W~raiv~  107 (108)
T cd01258          78 LIRTGTQ-VENHYLRVETHRDLASWERALVR  107 (108)
T ss_pred             EEEcCCc-eeeEEEEecCHHHHHHHHHHHhc
Confidence            8876432 38999999999999999999864

Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain

Probab=97.58  E-value=0.0006  Score=62.69  Aligned_cols=103  Identities=19%  Similarity=0.277  Sum_probs=65.2

Q ss_pred             CceEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCC-CC--Cceee----eeeCcEEcCCCcceeeccCCcc
Q 005588           17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALP-QR--GGEVN----LTLGGIDLNNSGSVVVREDKKL   89 (689)
Q Consensus        17 ~~V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p-~~--~~e~~----l~L~~I~L~~~~sv~~~~~kk~   89 (689)
                      +..+++|-|  .|-+...+.++.|+|-|-++.|+|-|....... .|  +....    +++..+.+.+...   ...-++
T Consensus         2 ~elI~EG~L--~ki~~~~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d---~~~~kn   76 (112)
T cd01261           2 NEFIMEGTL--TRVGPSKKAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPD---SSEYKN   76 (112)
T ss_pred             ccccccCcE--EEEecccCCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCC---CcccCc
Confidence            356789944  455544567899999999999999886443111 11  11111    2333333332111   012246


Q ss_pred             eEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHHhh
Q 005588           90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ  126 (689)
Q Consensus        90 ~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~~  126 (689)
                      .|.|...  +++.|.|+|.|+++..+||++|..++.+
T Consensus        77 aF~I~~~--~~~s~~l~Akt~eeK~~Wm~~l~~~~~~  111 (112)
T cd01261          77 AFEIILK--DGNSVIFSAKNAEEKNNWMAALISVQTK  111 (112)
T ss_pred             eEEEEcC--CCCEEEEEECCHHHHHHHHHHHHHHhcC
Confidence            6777642  3679999999999999999999988754

Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=97.51  E-value=0.00023  Score=80.91  Aligned_cols=101  Identities=21%  Similarity=0.299  Sum_probs=62.2

Q ss_pred             CCceEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEE-cCCCCCCCCCCceeeeeeCcEEcCCCcceee--ccCCcceEE
Q 005588           16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFF-KNDPSALPQRGGEVNLTLGGIDLNNSGSVVV--REDKKLLTV   92 (689)
Q Consensus        16 ~~~V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YY-Kd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~--~~~kk~~Fv   92 (689)
                      .+.+.+.||++  +.+...+ |++|||.+.++.+... +..+........    .+...++..+..+..  ...+.++|+
T Consensus       374 ~sDv~~~G~l~--k~~~~~~-wk~ry~~l~~~~l~~~~~~~~~~~~~~~~----~~~l~~~~~v~pv~~~~~~~~~~~~~  446 (478)
T PTZ00267        374 TSDVTHGGYLY--KYSSDMR-WKKRYFYIGNGQLRISLSENPENDGVAPK----SVNLETVNDVFPVPEVYSQKHPNQLV  446 (478)
T ss_pred             cCCcccceEEe--ccCCCcc-hhhheEEecCCceEEEeccccccCCCCCc----cccHHHhcccccccHHhcCCCCceEE
Confidence            34678899666  6665444 9999999998655544 323221111111    111222333322211  123467777


Q ss_pred             EEeCCCCCcEEEEEecChHHHHHHHHHHHHHHh
Q 005588           93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALA  125 (689)
Q Consensus        93 I~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~  125 (689)
                      +..  +.++.++|.|++++++++||.+|+.++.
T Consensus       447 i~~--~~~~~~~~~~~~~~~~~~W~~~~~~~~~  477 (478)
T PTZ00267        447 LWF--NNGQKIIAYAKTAEDRDQWISKFQRACG  477 (478)
T ss_pred             EEe--cCCcEEEEecCChHHHHHHHHHHHHHhC
Confidence            743  4588999999999999999999999873

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.38  E-value=0.00018  Score=85.85  Aligned_cols=98  Identities=21%  Similarity=0.377  Sum_probs=70.0

Q ss_pred             ceEEEEeeeeeecCC-CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeC
Q 005588           18 TVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPD   96 (689)
Q Consensus        18 ~V~KeG~L~l~KkG~-~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~   96 (689)
                      .....|+||  ++.. ..+.|+||||-..++.+.|++.-.....    .+..+|..+.+..+..   ..++++||.|+. 
T Consensus       273 ~~~~~~~l~--~k~~~~~~tw~r~~f~~q~~~l~~~~r~~~~~~----~~~~dL~~csvk~~~~---~~drr~CF~iiS-  342 (785)
T KOG0521|consen  273 GYRMEGYLR--KKASNASKTWKRRWFSIQDGQLGYQHRGADAEN----VLIEDLRTCSVKPDAE---QRDRRFCFEIIS-  342 (785)
T ss_pred             hhhhhhhhh--hhcccchhhHHhhhhhhhccccccccccccccc----cccccchhccccCCcc---cccceeeEEEec-
Confidence            345556555  5543 4889999999999999999876554331    2223444444444322   236889999876 


Q ss_pred             CCCCcEEEEEecChHHHHHHHHHHHHHHhhC
Q 005588           97 GRDGRAFTLKAETSEDLYEWKTALELALAQA  127 (689)
Q Consensus        97 ~~~~rty~fqAdSeeE~~eWi~AL~~ai~~a  127 (689)
                        ..++|.|||+++.+...||.+|+..+..+
T Consensus       343 --~tks~~lQAes~~d~~~Wi~~i~nsi~s~  371 (785)
T KOG0521|consen  343 --PTKSYLLQAESEKDCQDWISALQNSILSA  371 (785)
T ss_pred             --CCcceEEecCchhHHHHHHHHHHHHHHHH
Confidence              57999999999999999999999999644

>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]

Probab=96.90  E-value=0.00058  Score=77.87  Aligned_cols=96  Identities=16%  Similarity=0.253  Sum_probs=66.2

Q ss_pred             CceEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeC
Q 005588           17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPD   96 (689)
Q Consensus        17 ~~V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~   96 (689)
                      ....|+|  |.++-+...+.|+|||||++.+.+.||+.+.+........+.+.-+.+.+..        .....|.+.. 
T Consensus       247 e~~ekSg--y~~~~~s~~k~lkrr~~v~k~gqi~~y~~~~~~~~~p~s~~d~~s~~~~~~~--------~~s~~fqli~-  315 (936)
T KOG0248|consen  247 ETMEKSG--YWTQLTSRIKSLKRRYVVFKNGQISFYRKHNNRDEEPASKIDIRSVTKLEQQ--------GAAYAFQLIT-  315 (936)
T ss_pred             chhhccc--chhcchHHHHHHHhHheeeccceEEEEEcCCCccccccCcccccccceeecc--------chhHHhhhhh-
Confidence            6678999  6567777789999999999999999999887755332222222222222222        2222333322 


Q ss_pred             CCCCcEEEEEecChHHHHHHHHHHHHHHh
Q 005588           97 GRDGRAFTLKAETSEDLYEWKTALELALA  125 (689)
Q Consensus        97 ~~~~rty~fqAdSeeE~~eWi~AL~~ai~  125 (689)
                        ....|+|-++++--..+|++.|+.+|.
T Consensus       316 --~t~~~~~~~~s~~lt~dw~~iL~~~iK  342 (936)
T KOG0248|consen  316 --STDKMNFMTESERTTHDWVTILSAAIK  342 (936)
T ss_pred             --hceeEEEeccChhhhhhhHHHHHHHHH
Confidence              257899999999999999999998885

>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain

Probab=96.88  E-value=0.0063  Score=53.48  Aligned_cols=86  Identities=22%  Similarity=0.329  Sum_probs=56.4

Q ss_pred             eEEEEeeeeeecCCCCCCcEEEEEEEeCC-eEEEEcCCCCCCCCCCceeeeeeCcEEcCC-CcceeeccCCcceEEEEeC
Q 005588           19 VFKSGPLFISSKGIGWKSWKKRWFILTRT-SLVFFKNDPSALPQRGGEVNLTLGGIDLNN-SGSVVVREDKKLLTVLFPD   96 (689)
Q Consensus        19 V~KeG~L~l~KkG~~~k~WkKRWFVL~~~-~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~-~~sv~~~~~kk~~FvI~~~   96 (689)
                      +.+.|.++  |+.+.  .+++|=++|++. .|+|+ |+....         .-|.|+++. +..+... ..+.|++.++ 
T Consensus         1 Il~~g~v~--Kr~gl--f~kkR~LiLTd~PrL~yv-dp~~~~---------~KgeIp~s~~~l~v~~~-~~~~F~I~Tp-   64 (89)
T cd01262           1 ILKIGAVK--KRKGL--FAKKRQLILTNGPRLIYV-DPVKKV---------VKGEIPWSDVELRVEVK-NSSHFFVHTP-   64 (89)
T ss_pred             Cceeeeee--ehhcc--ccceeeEEEecCceEEEE-cCCcCe---------EEeEecccccceEEEEe-cCccEEEECC-
Confidence            45778554  44432  579999999976 55555 443222         235577777 4444333 3356677676 


Q ss_pred             CCCCcEEEEEecChHHHHHHHHHHHHHH
Q 005588           97 GRDGRAFTLKAETSEDLYEWKTALELAL  124 (689)
Q Consensus        97 ~~~~rty~fqAdSeeE~~eWi~AL~~ai  124 (689)
                         +|+|+|. +-......|+.+|..+.
T Consensus        65 ---~rty~le-D~~~~a~~W~~~I~~~~   88 (89)
T cd01262          65 ---NKVYSFE-DPKGRASQWKKAIEDLQ   88 (89)
T ss_pred             ---CceEEEE-CCCCCHHHHHHHHHHHh
Confidence               8999995 55688999999998763

3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]

Probab=96.69  E-value=0.00094  Score=74.89  Aligned_cols=97  Identities=29%  Similarity=0.402  Sum_probs=65.4

Q ss_pred             eEEEEeeeeeecCC--CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC------Ccce
Q 005588           19 VFKSGPLFISSKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED------KKLL   90 (689)
Q Consensus        19 V~KeG~L~l~KkG~--~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~------kk~~   90 (689)
                      ...+|-|- .|||.  .++.|+.|||.|.|..|.|-|.......        .-..|++....+|..-..      -+..
T Consensus       735 p~iEGQLK-EKKGrWRf~kRW~TrYFTLSgA~L~~~kg~s~~dS--------~~~~IDl~~IRSVk~v~~kr~~rslpKA  805 (851)
T KOG3723|consen  735 PLIEGQLK-EKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDS--------DDCPIDLSKIRSVKAVAKKRRDRSLPKA  805 (851)
T ss_pred             chhcchhh-hhccchhhhhhhccceEEecchhhhcccCCCCCCC--------CCCCccHHHhhhHHHHHhhhhhcccchh
Confidence            36677331 23332  3688999999999999999776543321        113366766666542111      1135


Q ss_pred             EEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHHhhC
Q 005588           91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA  127 (689)
Q Consensus        91 FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~~a  127 (689)
                      |.|++.   ..+|.|+|.+++-.++|+++|+=|++.|
T Consensus       806 FEIFTA---D~T~ILKaKDeKNAEEWlqCL~IavAHa  839 (851)
T KOG3723|consen  806 FEIFTA---DKTYILKAKDEKNAEEWLQCLNIAVAHA  839 (851)
T ss_pred             hheeec---CceEEeecccccCHHHHHHHHHHHHHHH
Confidence            666552   6789999999999999999999988754

>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis

Probab=96.63  E-value=0.027  Score=52.61  Aligned_cols=99  Identities=15%  Similarity=0.208  Sum_probs=55.4

Q ss_pred             eeeeeecCC---CCCCcEEEEEEEeC--CeEEEEcCCCCCCCCC-CceeeeeeCcEEcCCCcceeecc----CCcceEEE
Q 005588           24 PLFISSKGI---GWKSWKKRWFILTR--TSLVFFKNDPSALPQR-GGEVNLTLGGIDLNNSGSVVVRE----DKKLLTVL   93 (689)
Q Consensus        24 ~L~l~KkG~---~~k~WkKRWFVL~~--~~L~YYKd~~~~~p~~-~~e~~l~L~~I~L~~~~sv~~~~----~kk~~FvI   93 (689)
                      |||+-.+++   .....++|||.|..  .+|+|+..++...... ...-.+.+..+.-.......+..    +..++|+|
T Consensus        14 ~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~si~i   93 (123)
T PF12814_consen   14 WLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNKSIII   93 (123)
T ss_pred             EEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccccceEEEE
Confidence            666432222   23578999999997  4777776544322111 11111222222211111111111    12234444


Q ss_pred             EeCCCCCcEEEEEecChHHHHHHHHHHHHHHh
Q 005588           94 FPDGRDGRAFTLKAETSEDLYEWKTALELALA  125 (689)
Q Consensus        94 ~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~  125 (689)
                      ..   ++|+.-|-|.+.++.+-|+++|+..++
T Consensus        94 ~t---~~R~L~l~a~s~~~~~~W~~aL~~L~~  122 (123)
T PF12814_consen   94 VT---PDRSLDLTAPSRERHEIWFNALRYLLQ  122 (123)
T ss_pred             Ec---CCeEEEEEeCCHHHHHHHHHHHHHHhh
Confidence            43   479999999999999999999998764

During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex

>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain

Probab=96.53  E-value=0.027  Score=50.59  Aligned_cols=93  Identities=18%  Similarity=0.171  Sum_probs=58.9

Q ss_pred             ceEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCC
Q 005588           18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG   97 (689)
Q Consensus        18 ~V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~   97 (689)
                      ..+++|.|...+.      =+.|++-|=...|.|-|-..+..   .-.-.+.+..+.+...     ....++.|.+....
T Consensus         3 eLlleg~l~~~~~------~~eR~vFLFe~~ll~~K~~~~~y---~~K~~i~~~~l~i~e~-----~~~d~~~F~v~~~~   68 (97)
T cd01222           3 DLLLEGRFREHGG------GKPRLLFLFQTMLLIAKPRGDKY---QFKAYIPCKNLMLVEH-----LPGEPLCFRVIPFD   68 (97)
T ss_pred             ceeeeceEEeecC------CCceEEEEecccEEEEEecCCee---EEEEEEEecceEEecC-----CCCCCcEEEEEecC
Confidence            4577886642221      24588888888888877544321   1111122333333321     12336889887754


Q ss_pred             CCCcEEEEEecChHHHHHHHHHHHHHH
Q 005588           98 RDGRAFTLKAETSEDLYEWKTALELAL  124 (689)
Q Consensus        98 ~~~rty~fqAdSeeE~~eWi~AL~~ai  124 (689)
                      .+.+.|.|+|.|.++...|+++|+.++
T Consensus        69 ~p~~~~~l~A~s~e~K~~W~~~i~~~i   95 (97)
T cd01222          69 DPKGALQLTARNREEKRIWTQQLKRAM   95 (97)
T ss_pred             CCceEEEEEecCHHHHHHHHHHHHHHh
Confidence            555799999999999999999999886

Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]

Probab=96.50  E-value=0.00057  Score=76.99  Aligned_cols=102  Identities=21%  Similarity=0.433  Sum_probs=66.4

Q ss_pred             CCceEEEEeeeeeecCCCCCCcEEEEEEEeCC-----eEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc-CCcc
Q 005588           16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRT-----SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE-DKKL   89 (689)
Q Consensus        16 ~~~V~KeG~L~l~KkG~~~k~WkKRWFVL~~~-----~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~-~kk~   89 (689)
                      +...-.+||||.-.+. .||.||||||||..-     .+.-|+.++. .|    ..-+.|.|+.+.-......-. .+.|
T Consensus       461 p~nmkhsgylyaig~n-vwkrwkkrffvlvqvsqytfamcsyrekka-ep----qel~qldgytvdytdp~pglqgg~~f  534 (1218)
T KOG3543|consen  461 PPNMKHSGYLYAIGRN-VWKRWKKRFFVLVQVSQYTFAMCSYREKKA-EP----QELIQLDGYTVDYTDPSPGLQGGKHF  534 (1218)
T ss_pred             CCccccceeehhhhhH-HHHHhHhhEEEEEEhhhhhhHhhhhhhccc-Ch----HHHhhccCeeeccCCCCCccccchHH
Confidence            3445678999955444 389999999999864     3334444332 22    223456666654422211112 3334


Q ss_pred             eEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHHhhC
Q 005588           90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA  127 (689)
Q Consensus        90 ~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~~a  127 (689)
                      |..+.-    |.+..|..+++.++.-|++|+-+|..++
T Consensus       535 fnavke----gdtvifasddeqdr~lwvqamyratgqs  568 (1218)
T KOG3543|consen  535 FNAVKE----GDTVIFASDDEQDRHLWVQAMYRATGQS  568 (1218)
T ss_pred             HHHhcc----CceEEeccCchhhhhHHHHHHHHhhCCc
Confidence            445543    7899999999999999999999998765

>PLN02866 phospholipase D

Probab=96.47  E-value=0.014  Score=70.92  Aligned_cols=88  Identities=19%  Similarity=0.319  Sum_probs=56.5

Q ss_pred             CCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCC--Ccceee------ccCCcceEEEEeCCCCCcEEEEE
Q 005588           35 KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNN--SGSVVV------REDKKLLTVLFPDGRDGRAFTLK  106 (689)
Q Consensus        35 k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~--~~sv~~------~~~kk~~FvI~~~~~~~rty~fq  106 (689)
                      .+|.||||||+.+.|.|.+++.+..+..   +-+.......+.  ...+..      ....++-|.|+.   .+|.+.|.
T Consensus       216 ~~w~k~w~v~k~~~l~~~~~p~~~~~~~---v~lfD~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~i~~---~~r~l~l~  289 (1068)
T PLN02866        216 DNWQKVWAVLKPGFLALLEDPFDAKPLD---IIVFDVLPASNGNGEGQISLAKEIKERNPLRFGFKVTC---GNRSIRLR  289 (1068)
T ss_pred             CchheeEEEEeccEEEEEecCCCCceeE---EEEEecccccccCCCcceeecccccccCCCcceEEEec---CceEEEEE
Confidence            4699999999999999998876654211   111000000011  111111      122345676765   47999999


Q ss_pred             ecChHHHHHHHHHHHHHHhhCC
Q 005588          107 AETSEDLYEWKTALELALAQAP  128 (689)
Q Consensus       107 AdSeeE~~eWi~AL~~ai~~aP  128 (689)
                      |.+...+..|+.+|+.+..+.|
T Consensus       290 ~~s~~~~~~w~~ai~~~~~~~~  311 (1068)
T PLN02866        290 TKSSAKVKDWVAAINDAGLRPP  311 (1068)
T ss_pred             ECCHHHHHHHHHHHHHHHhccC
Confidence            9999999999999999985544

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=96.46  E-value=0.009  Score=68.49  Aligned_cols=37  Identities=14%  Similarity=0.287  Sum_probs=31.3

Q ss_pred             CcceEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHHh
Q 005588           87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA  125 (689)
Q Consensus        87 kk~~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~  125 (689)
                      .++.|.+..  ++|+.|.|+|.+.++++.||.+|++++.
T Consensus       454 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  490 (496)
T PTZ00283        454 AAHVFAVAF--KTGRRLLFQARSDPERDAWMQKIQSVLG  490 (496)
T ss_pred             CCcEEEEEe--cCCcEEEEecCCchhHHHHHHHHHHhcC
Confidence            456666654  5699999999999999999999999974

>PF15408 PH_7: Pleckstrin homology domain

Probab=96.43  E-value=0.001  Score=57.45  Aligned_cols=93  Identities=10%  Similarity=0.090  Sum_probs=58.2

Q ss_pred             EEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceee--eeeCcEEcCCCcceeeccCCcceEEEEeCCCC
Q 005588           22 SGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVN--LTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD   99 (689)
Q Consensus        22 eG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~--l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~~~   99 (689)
                      +||||...+|.    -+|||.+|++..|.+|.++....   ..++.  ..+-.+++.+-....+ .-.-..|-|-..+++
T Consensus         1 EGYLY~~E~~s----i~rRF~~L~~K~~~~~~~KGG~~---L~sF~L~~s~~s~Pm~~~~~A~~-N~Gi~A~G~L~~~~~   72 (104)
T PF15408_consen    1 EGYLYRDEDSS----IQRRFVMLRSKQFNMYEDKGGQY---LCSFQLSSSVVSHPMVNFSQAVP-NLGINAFGFLMYSPS   72 (104)
T ss_pred             CCeEEEeccch----HHHHHHhhhhceeEEecccCCce---eeeeehhhhhhhcccccccccCC-CCCeeEEEEEEecCC
Confidence            69999888886    58899999999999998765432   11111  1111233322111000 001123444334567


Q ss_pred             CcEEEEEecChHHHHHHHHHHHH
Q 005588          100 GRAFTLKAETSEDLYEWKTALEL  122 (689)
Q Consensus       100 ~rty~fqAdSeeE~~eWi~AL~~  122 (689)
                      ++..-+.|++.+.|+.|++++.+
T Consensus        73 ~~~~~~FA~S~~~~~~Wi~~mN~   95 (104)
T PF15408_consen   73 RRHVQCFASSKKVCQSWIQVMNS   95 (104)
T ss_pred             cchhhhhhhHHHHHHHHHHHhcC
Confidence            88888999999999999999874

>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]

Probab=96.31  E-value=0.0019  Score=78.96  Aligned_cols=161  Identities=15%  Similarity=0.230  Sum_probs=124.2

Q ss_pred             ccccchHHH---hhhCCCCcHHHHH-HHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCc---cC----CCCCCccc
Q 005588          165 VVGRPILLA---LEDIDGGPSFLEK-ALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT---EF----SADEDAHV  233 (689)
Q Consensus       165 vFG~pL~~l---l~~~~~VP~iL~~-~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~---~~----~~~~Dvh~  233 (689)
                      ++|+++..+   .......|.++.. +.......|....|+||.++....+...+..++....   .+    ....++..
T Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~vs~~~~~e~~~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~  541 (918)
T KOG1453|consen  462 ILGTDLTTLSVNKDLNSNRPLSVSRSLERESRSPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVNL  541 (918)
T ss_pred             ccccCccccccchhhhcccCcccccchhcccCCCCcccccccccCCccccccchhhccCccccchhccCCCccccccchh
Confidence            888888666   2223457888888 7777777899999999999998888888888876421   11    11335667


Q ss_pred             chhhHHHHhhhC--CCCCCChhhHHHHH----------------HHHhcCCHHHHH-------HHHHHHHhc----cCCh
Q 005588          234 IGDCVKHVLREL--PSSPVPASCCTALL----------------EAYKIDRKEARI-------SAMRSAILE----TFPE  284 (689)
Q Consensus       234 VAslLK~fLReL--PePLlp~~ly~~~i----------------~~~~~~~~e~ri-------~~l~~lIl~----~LP~  284 (689)
                      ..+.++.|+|.+  |.+......|.-++                .........+++       ..+.. +..    .+|.
T Consensus       542 ~sg~~~~~~r~~~~P~~c~~c~~~~~~~~~~c~~c~~~chkkc~~~~~~~~~~~~l~~~~~fG~~l~~-~~~~e~~~vP~  620 (918)
T KOG1453|consen  542 HSGALKHYLRSLRKPAPCRTCETYSWFMELECELCRLVCHKKCLEALKSLCGHERLPGRPLFGVSLSE-LARYEPSTVPF  620 (918)
T ss_pred             ccCcchhhhhcccCCcccccccccchhhhcccceeeeeccccchhhccccCccccccccccccHHHHH-hhccCCCCCCH
Confidence            777999999999  99988888888777                334444445555       56665 345    8999


Q ss_pred             hHHHHHHHHHHHHHHhhcccCCC-CCCc-cchhhhhcc----cccCCC
Q 005588          285 PNRRLLQRILRMMHTISSHAHEN-RMTP-SAVAACMAP----LLLRPL  326 (689)
Q Consensus       285 ~N~~lL~~Ll~~L~~Va~~s~~N-kMta-~NLAivfaP----~Llr~~  326 (689)
                      ....+|.++..++.+|.....+| -|+. .||..+|++    +++...
T Consensus       621 i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~  668 (918)
T KOG1453|consen  621 ILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTP  668 (918)
T ss_pred             HHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCC
Confidence            99999999999999999998888 8888 999999999    555543

>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]

Probab=96.30  E-value=0.0041  Score=68.85  Aligned_cols=95  Identities=20%  Similarity=0.334  Sum_probs=65.8

Q ss_pred             ceEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCC
Q 005588           18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG   97 (689)
Q Consensus        18 ~V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~   97 (689)
                      -+...|  ++.|.......|+-|||+|..+.|.||+++..+..  |     ..|.|.+.....-....+...|++.+   
T Consensus        23 w~e~~G--~lskwtnyi~gwqdRyv~lk~g~Lsyykse~E~~h--G-----cRgsi~l~ka~i~ahEfDe~rfdIsv---   90 (611)
T KOG1739|consen   23 WVERCG--VLSKWTNYIHGWQDRYVVLKNGALSYYKSEDETEH--G-----CRGSICLSKAVITAHEFDECRFDISV---   90 (611)
T ss_pred             chhhcc--eeeeeecccccccceEEEEcccchhhhhhhhhhhc--c-----cceeeEeccCCcccccchhheeeeEe---
Confidence            345556  44466666778999999999999999999877652  2     23345555433322223333444443   


Q ss_pred             CCCcEEEEEecChHHHHHHHHHHHHHHh
Q 005588           98 RDGRAFTLKAETSEDLYEWKTALELALA  125 (689)
Q Consensus        98 ~~~rty~fqAdSeeE~~eWi~AL~~ai~  125 (689)
                       +..++++.|.+...++.|+.+|...-.
T Consensus        91 -n~nv~~lra~~~~hr~~w~d~L~wmk~  117 (611)
T KOG1739|consen   91 -NDNVWYLRAQDPDHRQQWIDALEWMKT  117 (611)
T ss_pred             -ccceeeehhcCcHHHHHHHHHHHHHhh
Confidence             268999999999999999999998765

>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]

Probab=96.22  E-value=0.0018  Score=75.59  Aligned_cols=94  Identities=22%  Similarity=0.326  Sum_probs=66.5

Q ss_pred             EEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCCCCC
Q 005588           21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDG  100 (689)
Q Consensus        21 KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~~~~  100 (689)
                      .+|||+  .|-..-..|+|-|.|.+.-+|+|||+..+..+.    .+++|-++.+..... ...-.|-+.|.+...   .
T Consensus       926 Lsg~Ll--rkfknssgwqkLwvvft~fcl~fyKS~qD~~~l----aslPlLgysvs~P~~-~d~i~K~~vfkl~fk---~  995 (1036)
T KOG3531|consen  926 LSGYLL--RKFKNSSGWQKLWVVFTNFCLFFYKSHQDSEPL----ASLPLLGYSVSIPAE-PDPIQKDYVFKLKFK---S  995 (1036)
T ss_pred             hhHHHH--HHhhccccceeeeeeecceeeEeeccccccccc----ccccccccccCCCCC-CCCcchhheeeeehh---h
Confidence            346555  332234479999999999999999998887642    344566666654222 111235577777653   6


Q ss_pred             cEEEEEecChHHHHHHHHHHHHHH
Q 005588          101 RAFTLKAETSEDLYEWKTALELAL  124 (689)
Q Consensus       101 rty~fqAdSeeE~~eWi~AL~~ai  124 (689)
                      .+|+|.|++.-..++|+..|+.+-
T Consensus       996 hvyffraes~yt~~rw~evi~~a~ 1019 (1036)
T KOG3531|consen  996 HVYFFRAESYYTFERWMEVITDAP 1019 (1036)
T ss_pred             hHHHHhhhhhhhhhhHHHHhhcCC
Confidence            899999999999999999998664

>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain

Probab=96.00  E-value=0.011  Score=53.66  Aligned_cols=94  Identities=21%  Similarity=0.310  Sum_probs=62.7

Q ss_pred             ceEEEEeeeeeecCC-CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec---cCCcceEEE
Q 005588           18 TVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---EDKKLLTVL   93 (689)
Q Consensus        18 ~V~KeG~L~l~KkG~-~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~---~~kk~~FvI   93 (689)
                      .++..|  |+.|-|+ ....|++|||-|-++.|-+|.......    ++      -|.+.....|.+.   -....|-++
T Consensus         2 DcIvhG--yi~KLGGPFls~WQ~Ry~~LfPNRLE~~~~~~~~~----~e------Li~M~~i~~V~~e~~~iK~~~CI~i   69 (116)
T cd01240           2 DCIVHG--YIKKLGGPFLSQWQTRYFKLYPNRLELYGESEANK----PE------LITMDQIEDVSVEFQQIKEENCILL   69 (116)
T ss_pred             ceEEee--ehhhhCCHHHHHHHHHHheeCcceeeecccccccC----Cc------EEEeehhhhcchhheeeccCceEEE
Confidence            467889  4446654 467899999999999999975443322    11      1333332222211   122345666


Q ss_pred             EeCCCCCcEEEEEecChHHHHHHHHHHHHHHh
Q 005588           94 FPDGRDGRAFTLKAETSEDLYEWKTALELALA  125 (689)
Q Consensus        94 ~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~  125 (689)
                      ...  +++.+++.++++.+..+|..-|+.+..
T Consensus        70 k~k--~~~k~vlt~~d~i~l~qW~~elr~a~r   99 (116)
T cd01240          70 KIR--DEKKIVLTNSDEIELKQWKKELRDAHR   99 (116)
T ss_pred             EEc--CCceEEEecCCcHHHHHHHHHHHHHHH
Confidence            553  478899999999999999999998864

Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or

>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain

Probab=94.90  E-value=0.38  Score=44.09  Aligned_cols=100  Identities=16%  Similarity=0.189  Sum_probs=56.3

Q ss_pred             eEEEEeeeeeecCCCCCCc-EEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec---cCCcceEEEE
Q 005588           19 VFKSGPLFISSKGIGWKSW-KKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---EDKKLLTVLF   94 (689)
Q Consensus        19 V~KeG~L~l~KkG~~~k~W-kKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~---~~kk~~FvI~   94 (689)
                      .+.+|=|....  . .+.| +.|+|-|-++.|+|-|...-..+...-...+.+..+.+.+...-...   ..-+..|.|.
T Consensus         2 li~~Gel~~~s--~-~~g~~q~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~   78 (109)
T cd01224           2 LFLQGEATRQK--Q-NKGWNSSRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIY   78 (109)
T ss_pred             ceEeeeEEEEe--c-ccCCcccEEEEEecceEEEEecccccCCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEE
Confidence            46778554333  1 1223 57899999999999885432111111112223333333332210000   0113556666


Q ss_pred             eCCCCCcEEEEEecChHHHHHHHHHHHH
Q 005588           95 PDGRDGRAFTLKAETSEDLYEWKTALEL  122 (689)
Q Consensus        95 ~~~~~~rty~fqAdSeeE~~eWi~AL~~  122 (689)
                      .. ..+..|.|+|.|+++...||.||..
T Consensus        79 ~~-~~~~~~~f~~Kt~e~K~~Wm~a~~~  105 (109)
T cd01224          79 SE-STDEWYLFSFKSAERKHRWLSAFAL  105 (109)
T ss_pred             Ec-CCCeEEEEEECCHHHHHHHHHHHHH
Confidence            53 3357899999999999999999875

Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF15406 PH_6: Pleckstrin homology domain

Probab=94.89  E-value=0.05  Score=49.44  Aligned_cols=69  Identities=20%  Similarity=0.350  Sum_probs=47.3

Q ss_pred             EEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCCCCCcEEEEEecChHHHHHHHHH
Q 005588           40 RWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTA  119 (689)
Q Consensus        40 RWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~~~~rty~fqAdSeeE~~eWi~A  119 (689)
                      -|..-+|.-|.||....+..        .+-|.|.|.....+......+|.|.+     .|..+.|+|.+..||+.||.+
T Consensus        42 AwAsqTGKGLLF~~K~~dka--------~P~GiinLadase~~~~g~~kF~f~~-----~G~khtF~A~s~aERD~Wv~~  108 (112)
T PF15406_consen   42 AWASQTGKGLLFFSKAEDKA--------SPSGIINLADASEPEKDGSNKFHFKI-----KGHKHTFEAASAAERDNWVAQ  108 (112)
T ss_pred             hhhhccCceEEEEecccccc--------CCcceEehhhccccccCCCceEEEEe-----CCceeeeecCCHHHhccHHHH
Confidence            46666776666665322222        14566888776665554445544444     389999999999999999999


Q ss_pred             HH
Q 005588          120 LE  121 (689)
Q Consensus       120 L~  121 (689)
                      |.
T Consensus       109 lk  110 (112)
T PF15406_consen  109 LK  110 (112)
T ss_pred             hh
Confidence            86

>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]

Probab=94.80  E-value=0.033  Score=63.33  Aligned_cols=105  Identities=20%  Similarity=0.278  Sum_probs=69.2

Q ss_pred             CCCCceEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcce-eeccCCcceEE
Q 005588           14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV-VVREDKKLLTV   92 (689)
Q Consensus        14 ~~~~~V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv-~~~~~kk~~Fv   92 (689)
                      .+++.++|+|.|+  |-.....+-..||++|-+..+.|-+-.. ..+  +..+.. -..+.+..+... .......+.|+
T Consensus       267 ~PsreLiKEG~l~--Kis~k~~~~qeRylfLFNd~~lyc~~r~-~~~--~~k~~~-r~~~s~~~~~v~~~~~~~~~~tF~  340 (623)
T KOG4424|consen  267 SPSRELIKEGQLQ--KISAKNGTTQERYLFLFNDILLYCKPRK-RLP--GSKYEV-RARCSISHMQVQEDDNEELPHTFI  340 (623)
T ss_pred             CcHHHHhhcccee--eeeccCCCcceeEEEEehhHHHhhhhhh-hcc--cceecc-ceeeccCcchhcccccccCCceEE
Confidence            4677899999666  6665566789999999999888876654 222  111111 011222221111 11123456788


Q ss_pred             EEeCCCCCcEEEEEecChHHHHHHHHHHHHHHhhC
Q 005588           93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA  127 (689)
Q Consensus        93 I~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~~a  127 (689)
                      ++.   ..|..-|+|.|.++..+|+++|+.+|..+
T Consensus       341 ~~G---~~r~vel~a~t~~ek~eWv~~I~~~Id~~  372 (623)
T KOG4424|consen  341 LTG---KKRGVELQARTEQEKKEWVQAIQDAIDKH  372 (623)
T ss_pred             Eec---ccceEEeecCchhhHHHHHHHHHHHHHHH
Confidence            875   36899999999999999999999999643

>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain

Probab=94.76  E-value=0.13  Score=45.83  Aligned_cols=89  Identities=16%  Similarity=0.234  Sum_probs=56.2

Q ss_pred             eEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCC---CCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEe
Q 005588           19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDP---SALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP   95 (689)
Q Consensus        19 V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~---~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~   95 (689)
                      .+++|+|....+|.    =|.|=|-|-++.|+|-+-..   ....+.....-++|..+.+....           |.+  
T Consensus         3 Lv~eg~lvel~~~~----rK~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~~-----------~~~--   65 (96)
T cd01228           3 LVKDSFLVELVEGS----RKLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSEP-----------FRI--   65 (96)
T ss_pred             ccccceeeeehhCC----CcceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHheecchh-----------hhc--
Confidence            57889776444443    36777778888888776532   11122223334455544443321           222  


Q ss_pred             CCCCCcEEEEEecChHHHHHHHHHHHHHH
Q 005588           96 DGRDGRAFTLKAETSEDLYEWKTALELAL  124 (689)
Q Consensus        96 ~~~~~rty~fqAdSeeE~~eWi~AL~~ai  124 (689)
                      ..+++++|+|.|.|..|+.+||.+|+...
T Consensus        66 ~~~~~KSf~~~asS~~Er~eW~~hI~~~~   94 (96)
T cd01228          66 HNKNGKSYTFLLSSDYERSEWRESIQKLQ   94 (96)
T ss_pred             cccCCceEEEEecCHHHHHHHHHHHHHHh
Confidence            13468999999999999999999998653

BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain

Probab=94.04  E-value=0.65  Score=43.67  Aligned_cols=79  Identities=15%  Similarity=0.156  Sum_probs=48.7

Q ss_pred             cEEEEEEEeCCeEEEEcCCCCCCCCCCceeee----eeCcEEcCCCcceee-------ccCCcceEEEEe-CC--CCCcE
Q 005588           37 WKKRWFILTRTSLVFFKNDPSALPQRGGEVNL----TLGGIDLNNSGSVVV-------REDKKLLTVLFP-DG--RDGRA  102 (689)
Q Consensus        37 WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l----~L~~I~L~~~~sv~~-------~~~kk~~FvI~~-~~--~~~rt  102 (689)
                      -+.+|+.|-++.|.|-|-+.      +..+.+    +...+.+..+.....       ....++.|.++. ..  ...+.
T Consensus        27 ~~~vylfLFnDlLl~tkkK~------~~~f~V~dy~~r~~l~V~~~e~~~~~~~~~~~~~~~~~~F~ltLl~N~~gk~~e  100 (125)
T cd01221          27 ARTIYLFLFNDLLLITKKKL------GSTFVVFDYAPRSFLRVEKIEPDNQKIPLGSNLVGRPNLFLLTLLRNADDKQAE  100 (125)
T ss_pred             CCcEEEEEecceEEEEEecC------CCeEEEEeeccccceEEeecccccccccccccccCCCceEEEEeeccCCCCEEE
Confidence            46789999999998887543      222332    233344443222100       013456777763 22  22357


Q ss_pred             EEEEecChHHHHHHHHHHH
Q 005588          103 FTLKAETSEDLYEWKTALE  121 (689)
Q Consensus       103 y~fqAdSeeE~~eWi~AL~  121 (689)
                      +.|+|+|+.|+.+||.||.
T Consensus       101 l~L~a~S~sdr~rWi~Al~  119 (125)
T cd01221         101 LLLSADSQSDRERWLSALA  119 (125)
T ss_pred             EEEECCCHHHHHHHHHhcC
Confidence            9999999999999999984

Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF15404 PH_4: Pleckstrin homology domain

Probab=93.97  E-value=0.31  Score=48.85  Aligned_cols=34  Identities=24%  Similarity=0.369  Sum_probs=27.0

Q ss_pred             EEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCC
Q 005588           21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDP   56 (689)
Q Consensus        21 KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~   56 (689)
                      ++|+||.+.+.  ...|+++|+||..+.|+.|..-.
T Consensus         1 ~sG~LY~K~~k--hs~F~~~~vvL~~G~Li~f~~~~   34 (185)
T PF15404_consen    1 MSGYLYQKPRK--HSTFKKYFVVLIPGFLILFQLFK   34 (185)
T ss_pred             CCceeeecCCC--CCCceEEEEEEeCCEEEEEEEEe
Confidence            46999954433  46899999999999999998743

>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain

Probab=93.92  E-value=1.3  Score=41.01  Aligned_cols=87  Identities=20%  Similarity=0.241  Sum_probs=52.2

Q ss_pred             EEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCCCC--CcEEEEEecChHHHHH
Q 005588           38 KKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD--GRAFTLKAETSEDLYE  115 (689)
Q Consensus        38 kKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~~~--~rty~fqAdSeeE~~e  115 (689)
                      +.|-+-|-...|+|-|-..... ..+...-..-..|.++...-........+.|.+...+++  ..+|.+||.|.+..+.
T Consensus        25 ~eR~vFLFe~~lvfsk~~~~~~-~~~~~~Y~yK~~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~  103 (114)
T cd01232          25 RERRVFLFEQSIIFAKEVKKKK-QFGNPKYIYKSKLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKANSQETKQE  103 (114)
T ss_pred             ceeEEEEeeceEEEEEEeccCC-CCCceeEEEecceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEECCCHHHHHH
Confidence            5566666677777776543321 111111112233333332221122344577888765553  5799999999999999


Q ss_pred             HHHHHHHHHh
Q 005588          116 WKTALELALA  125 (689)
Q Consensus       116 Wi~AL~~ai~  125 (689)
                      |+..|+.++.
T Consensus       104 W~~~I~~il~  113 (114)
T cd01232         104 WVKKIREILQ  113 (114)
T ss_pred             HHHHHHHHhh
Confidence            9999999874

Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]

Probab=93.55  E-value=0.016  Score=65.67  Aligned_cols=72  Identities=22%  Similarity=0.298  Sum_probs=50.2

Q ss_pred             HHHHHHhhcccCCCCCCccchhhhhcccccCCCCCCCCccccccC--CCCCchHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 005588          294 LRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFD--MNGDNSAQLLAAANAANNAQAIIATLLEEYENI  371 (689)
Q Consensus       294 l~~L~~Va~~s~~NkMta~NLAivfaP~Llr~~~~~~~~le~~~~--~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~I  371 (689)
                      ++||..|+.++....|.+.|||+||+|+|+|.+.     ++.-..  ..|+      ++..+.....-++++++.|-+.|
T Consensus         1 ~rHls~va~~~s~tnmhA~Nla~vwapnllrske-----ies~lcs~~~Gd------aAf~avq~qsvV~EfilnhvDvl   69 (670)
T KOG1449|consen    1 HRHLSSVALGPSRTNMHAINLAEVWAPNLLRSKE-----IESSLCSHLWGD------AAFSAVQAQSVVSEFILNHVDVL   69 (670)
T ss_pred             CcchhhhhccchhhHHHHhhHHHhhhhhhHHHHH-----HHHhhhcccccc------HHHHHHHhhhhhhhhccccccee
Confidence            3689999999999999999999999999999763     222111  0122      12222222334678999999999


Q ss_pred             CCCCC
Q 005588          372 FDDES  376 (689)
Q Consensus       372 F~~~~  376 (689)
                      |..-.
T Consensus        70 F~~~a   74 (670)
T KOG1449|consen   70 FLPTA   74 (670)
T ss_pred             cCCcC
Confidence            98654

>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]

Probab=92.68  E-value=0.037  Score=62.78  Aligned_cols=175  Identities=19%  Similarity=0.190  Sum_probs=113.3

Q ss_pred             CcccccchHHHhh-hCCCCcH-HHHHHHHHHHh---cC--CCcCCeeecCCCHHHHHHHHHHhhcCCccCCCCCCcccch
Q 005588          163 SLVVGRPILLALE-DIDGGPS-FLEKALRFLEK---FG--TKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIG  235 (689)
Q Consensus       163 ~~vFG~pL~~ll~-~~~~VP~-iL~~~i~~Le~---~G--l~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~Dvh~VA  235 (689)
                      ...||.-|....- -++.||. .+.+||..+..   ++  +...|.|++..+....        .+...|....|+.++.
T Consensus       207 ~~~~gl~ltr~~~~~G~~lpas~~g~~C~s~~~~~q~~ei~~~~g~l~a~~D~gae--------~d~~af~~p~di~v~S  278 (670)
T KOG1449|consen  207 NLNCGLVLTRMEVGLGRGLPASEWGRGCVSHHAVTQHREILDGNGVLSAVEDEGAE--------VDGEAFRWPSDIVVES  278 (670)
T ss_pred             CccccceecceeeccccccchhhhccchhccccchhccCCcccCcceecccccccc--------ccccccCCccceeeec
Confidence            3455554433322 2456888 77788776665   22  3445677766543221        2234556678999999


Q ss_pred             hhHHHHhhhCCCCCCChhhHHHHHHHHhcCC-HHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccch
Q 005588          236 DCVKHVLRELPSSPVPASCCTALLEAYKIDR-KEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAV  314 (689)
Q Consensus       236 slLK~fLReLPePLlp~~ly~~~i~~~~~~~-~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NL  314 (689)
                      -+++-|.+.+|.|+..        .++...| ..+.+..++- ....+++.|+.+-..|..||.....-.       .++
T Consensus       279 ~d~dp~s~Q~~pp~~~--------~~~~k~Ds~s~sv~~~~~-~~~~~se~~~r~a~~lse~ft~~~~~~-------~s~  342 (670)
T KOG1449|consen  279 WDMDPYSRQLPPPYPK--------EAFEKEDSLSESVESLRF-SLETMSEAHYRTAKFLSEHFTRLCKSK-------KSL  342 (670)
T ss_pred             cccChhhhhcCCCCcc--------cccccccCcccceeeecc-ccccCCcccchHhhhhchhhhhhcccc-------ccc
Confidence            9999999999999544        2222222 3344455443 446899999999999999998877633       899


Q ss_pred             hhhhcccccCCCCCCCCcccc-ccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005588          315 AACMAPLLLRPLLAGECELED-DFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES  376 (689)
Q Consensus       315 AivfaP~Llr~~~~~~~~le~-~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~~~  376 (689)
                      +|++.|+++|++..    ++. ++-..++           .+....+..+.|++....|..+.
T Consensus       343 ~I~~~~~~~r~ppt----L~~~~~h~~~~-----------~~~~~~~~~~~~e~s~~~~~~~i  390 (670)
T KOG1449|consen  343 AIVWSPNLFRPPPT----LNGADTHLLSG-----------LNVHTAICDFFIENSESLFVNDI  390 (670)
T ss_pred             eeecCCCCCCCCCC----CCchhhhhccc-----------CCcceeecccchhhhhhhhhccc
Confidence            99999999998842    222 1111111           12234567889999999998765

>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]

Probab=92.16  E-value=0.1  Score=61.62  Aligned_cols=95  Identities=25%  Similarity=0.389  Sum_probs=66.6

Q ss_pred             CCceEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEe
Q 005588           16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP   95 (689)
Q Consensus        16 ~~~V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~   95 (689)
                      ...+++.|||-+.+-+ +.....|||..+.+..+.||..+++..++         +.|.+...+.|.. ...+.+-+++ 
T Consensus        84 isp~~~~gwldk~~pq-g~~~~qkr~vkf~~~s~~yf~~~k~py~k---------~~i~va~is~v~~-~gd~kfevit-  151 (1186)
T KOG1117|consen   84 ISPVIKSGWLDKLSPQ-GEYPFQKRWVKFDGSSLEYFLSPKDPYSK---------GPIPVAAISAVRN-FGDNKFEVIT-  151 (1186)
T ss_pred             cCchhhcchhhccCcC-cccccCccceecCCCCccccCCCCCCCCC---------Cceeeehhhhhhh-ccCceEEEEe-
Confidence            3458999965433222 24557999999999999999998876633         3355554443322 2233334444 


Q ss_pred             CCCCCcEEEEEecChHHHHHHHHHHHHHHh
Q 005588           96 DGRDGRAFTLKAETSEDLYEWKTALELALA  125 (689)
Q Consensus        96 ~~~~~rty~fqAdSeeE~~eWi~AL~~ai~  125 (689)
                         +.|+|.|.++++.++..|+..++.+..
T Consensus       152 ---n~r~fvfr~e~~~~r~~w~s~l~s~~~  178 (1186)
T KOG1117|consen  152 ---NQRTFVFRQESEGERFIWVSPLQSALK  178 (1186)
T ss_pred             ---cceEEEEecCCcccceeeechhhhcch
Confidence               389999999999999999999998873

>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]

Probab=91.24  E-value=0.13  Score=61.30  Aligned_cols=90  Identities=23%  Similarity=0.361  Sum_probs=58.1

Q ss_pred             EEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCCCC
Q 005588           20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD   99 (689)
Q Consensus        20 ~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~~~   99 (689)
                      -.+|||+  |.....++|.+|||+|.++.|.||++.........       +.+.+....   .......-+... .+. 
T Consensus        78 ~~~g~l~--k~~n~~~~~~~r~f~l~~g~ls~~~~~~~~~~~~~-------~~~~~~~a~---i~~~~~~~~~~~-~~~-  143 (799)
T KOG1737|consen   78 SLEGILL--KWRNYSKGPSSRWFVLSGGLLSYYFDNSFSKTTCG-------GGINLVTAW---IQNGERMDICSV-DGS-  143 (799)
T ss_pred             cccceee--ccccccCCcccceEEecCcceeeeccCCccccCCC-------Ccccccccc---cccCCCcccchh-hcc-
Confidence            4568555  77778899999999999999999988765543222       122222110   011111112222 122 


Q ss_pred             CcEEEEEecChHHHHHHHHHHHHH
Q 005588          100 GRAFTLKAETSEDLYEWKTALELA  123 (689)
Q Consensus       100 ~rty~fqAdSeeE~~eWi~AL~~a  123 (689)
                      ...|+..+-+...+..|+.+++.+
T Consensus       144 ~q~~~~~~~~~~~~~~~~~~~~l~  167 (799)
T KOG1737|consen  144 CQIYLVELSKKLQRQGWLHALELA  167 (799)
T ss_pred             cchhhhhhhHHHhhcchhhhhhhc
Confidence            467889999999999999999876

>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain

Probab=90.40  E-value=2.8  Score=39.85  Aligned_cols=87  Identities=14%  Similarity=0.176  Sum_probs=50.7

Q ss_pred             EEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCCCCCcEEEEEecChHHHHHHH
Q 005588           38 KKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWK  117 (689)
Q Consensus        38 kKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~~~~rty~fqAdSeeE~~eWi  117 (689)
                      +.|..-|-...++|-|-............-..-..|.++...-..........|.+....+ ..+|.++|.|.+..+.|+
T Consensus        30 ~eRhVFLFE~~viF~K~~~~~~~~~~~p~Y~yK~~ikls~lglte~v~gd~~kFeiw~~~~-~~~yilqA~t~e~K~~Wv  108 (133)
T cd01227          30 MQRHIFLHEKAVLFCKKREENGEGEKAPSYSFKQSLKMTAVGITENVKGDTKKFEIWYNAR-EEVYILQAPTPEIKAAWV  108 (133)
T ss_pred             ceeEEEEecceEEEEEEeccCCCCCcceeEEEeeeEEeecccccccCCCCccEEEEEeCCC-CcEEEEEcCCHHHHHHHH
Confidence            4577777777777776543221111111111122233332211111123356788876543 569999999999999999


Q ss_pred             HHHHHHHh
Q 005588          118 TALELALA  125 (689)
Q Consensus       118 ~AL~~ai~  125 (689)
                      ..|+..+.
T Consensus       109 ~~I~~iL~  116 (133)
T cd01227         109 NEIRKVLT  116 (133)
T ss_pred             HHHHHHHH
Confidence            99999984

Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain

Probab=90.22  E-value=2.2  Score=38.56  Aligned_cols=79  Identities=19%  Similarity=0.190  Sum_probs=44.4

Q ss_pred             EEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCCCCCcEEEEEecChHHHHHHH
Q 005588           38 KKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWK  117 (689)
Q Consensus        38 kKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~~~~rty~fqAdSeeE~~eWi  117 (689)
                      ++..|-|-+..|+|-.-....  +.......+|..+-+.+...   ...-+.+|.|..   ..+.+.+||+|+++..+|+
T Consensus        20 ~rv~~FLfND~Lvva~~~~~~--ky~~~~~~~L~~i~V~ni~D---~~~~kNafki~t---~~~s~i~qaes~~~K~eWl   91 (100)
T cd01226          20 QRVMLFLLNDRLIVGNINAAG--KYVMESTYSLNSVAVVNVKD---RENAKKVLKLLI---FPESRIYQCESARIKTEWF   91 (100)
T ss_pred             ceEEEEEeccEEEEEEecccc--eEEEEEEEehHHeEEEecCC---CcCcCceEEEEe---CCccEEEEeCCHHHHHHHH
Confidence            344355555556555332211  11223334444444433211   112234555543   2688999999999999999


Q ss_pred             HHHHHHH
Q 005588          118 TALELAL  124 (689)
Q Consensus       118 ~AL~~ai  124 (689)
                      ..|+++.
T Consensus        92 ~~le~a~   98 (100)
T cd01226          92 EELEQAK   98 (100)
T ss_pred             HHHHHHh
Confidence            9999886

Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain

Probab=89.75  E-value=1.8  Score=39.01  Aligned_cols=82  Identities=17%  Similarity=0.303  Sum_probs=49.0

Q ss_pred             CCCcEEEEEEEeC----CeEEEEcC--CCCCCCCCCceeeeeeC-cEEcCCCcceeeccCCcceEEEEeCCCCCcEEEEE
Q 005588           34 WKSWKKRWFILTR----TSLVFFKN--DPSALPQRGGEVNLTLG-GIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLK  106 (689)
Q Consensus        34 ~k~WkKRWFVL~~----~~L~YYKd--~~~~~p~~~~e~~l~L~-~I~L~~~~sv~~~~~kk~~FvI~~~~~~~rty~fq  106 (689)
                      ...|+|--.+|+.    ..|.||--  ++...|+.+    +... ...+..++.... .++...|++...  ++..|.|.
T Consensus        18 ~~~WqkcRl~L~~~~gg~~le~~~~~pPKssrpk~~----v~C~~I~EvR~tt~LEm-PD~~nTFvLK~~--~~~eyI~E   90 (107)
T cd01231          18 GARWQRGRLVLRKAVGGYMLEFYLPLPPKSSKPKLQ----VACSSISEVRECTRLEM-PDNLYTFVLKVD--DNTDIIFE   90 (107)
T ss_pred             ccccceeeEEEEecCCCceEEEEccCCCCCCCCccc----cchhhhhhhhhcccccc-cCcccEEEEEec--CCceEEEE
Confidence            4568887777763    35555544  343333221    1111 122233332222 345567888763  46789999


Q ss_pred             ecChHHHHHHHHHHHH
Q 005588          107 AETSEDLYEWKTALEL  122 (689)
Q Consensus       107 AdSeeE~~eWi~AL~~  122 (689)
                      |.+..+++.|+..|+.
T Consensus        91 a~d~~q~~SWla~Ir~  106 (107)
T cd01231          91 VGDEQQLNSWLAELRY  106 (107)
T ss_pred             cCCHHHHHHHHHHHhc
Confidence            9999999999999974

LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.

>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]

Probab=89.65  E-value=0.61  Score=50.27  Aligned_cols=105  Identities=15%  Similarity=0.261  Sum_probs=67.9

Q ss_pred             CCCCceEEEEeeeeeecC-CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcc-----eeeccCC
Q 005588           14 GASNTVFKSGPLFISSKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS-----VVVREDK   87 (689)
Q Consensus        14 ~~~~~V~KeG~L~l~KkG-~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~s-----v~~~~~k   87 (689)
                      ..+..++..||.--...+ ..+..++.||..|+|.+++.|..++-...    .++-....+.+...-.     ....+.+
T Consensus       276 ~v~~qivyMGWvne~~q~~~s~q~y~P~FLaLkG~~~y~F~tPPv~t~----dw~rAe~ty~vye~mfki~Kdsd~~D~R  351 (505)
T KOG3549|consen  276 AVGEQIVYMGWVNEGVQNNISWQSYKPRFLALKGTEVYLFETPPVNTA----DWSRAEVTYKVYETMFKIVKDSDTVDSR  351 (505)
T ss_pred             CccceEEEeeeccccccCcccccccCceeEEecCcEEEEEcCCCcchh----hhhhhhhhHHHHHHHHHHhccccccccc
Confidence            356789999944322222 34677799999999999999987654321    1111111111111000     0112457


Q ss_pred             cceEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHH
Q 005588           88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL  124 (689)
Q Consensus        88 k~~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai  124 (689)
                      ++||.+...  .+...||..+...|+..|-++.+.|+
T Consensus       352 ~~CF~~qs~--~ge~~yfsVEl~seLa~wE~sfq~At  386 (505)
T KOG3549|consen  352 QHCFLLQSS--GGEPRYFSVELRSELARWENSFQAAT  386 (505)
T ss_pred             cceEEEEcC--CCCceEEEEehhhHHHHHHHHHhhHH
Confidence            799998763  57899999999999999999998876

>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A

Probab=88.75  E-value=1.1  Score=42.62  Aligned_cols=35  Identities=23%  Similarity=0.338  Sum_probs=25.9

Q ss_pred             ceEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHH
Q 005588           89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA  123 (689)
Q Consensus        89 ~~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~a  123 (689)
                      +.|.|..-++.+..|+|+|+|..++++|+++|.++
T Consensus       100 yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q  134 (135)
T PF15405_consen  100 YPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ  134 (135)
T ss_dssp             EEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred             cCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence            56677666667778999999999999999999865

>cd01223 PH_Vav Vav pleckstrin homology (PH) domain

Probab=88.59  E-value=2.8  Score=38.92  Aligned_cols=87  Identities=18%  Similarity=0.164  Sum_probs=50.4

Q ss_pred             cEEEEEEEeCCeEEEEcCCCCCCCCCCceee----eeeCcEEcCCCc--ceee-ccCCcceEEEEeCCCCCcEEEEEecC
Q 005588           37 WKKRWFILTRTSLVFFKNDPSALPQRGGEVN----LTLGGIDLNNSG--SVVV-REDKKLLTVLFPDGRDGRAFTLKAET  109 (689)
Q Consensus        37 WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~----l~L~~I~L~~~~--sv~~-~~~kk~~FvI~~~~~~~rty~fqAdS  109 (689)
                      =+.||.-|-+..+++-|......  +.++..    +.+..+.|....  .... ...-++.|.+... ..+..|.|+|.|
T Consensus        20 ~k~RyiFLFDk~lI~CK~~~~~~--~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~-~~~~~~~f~~Kt   96 (116)
T cd01223          20 TKLRYIFLFDKAVIVCKALGDNT--GDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHK-QGKTGFTFYFKT   96 (116)
T ss_pred             CceeEEEEecceEEEEEecCCCC--CCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEec-CCCccEEEEeCC
Confidence            35888888888787877554321  111111    222333333221  1110 0122355666553 223679999999


Q ss_pred             hHHHHHHHHHHHHHHhh
Q 005588          110 SEDLYEWKTALELALAQ  126 (689)
Q Consensus       110 eeE~~eWi~AL~~ai~~  126 (689)
                      +++...||.+|..|+..
T Consensus        97 ee~K~kWm~al~~a~sn  113 (116)
T cd01223          97 EHLRKKWLKALEMAMSN  113 (116)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999999863

Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]

Probab=87.09  E-value=0.09  Score=60.49  Aligned_cols=56  Identities=18%  Similarity=0.252  Sum_probs=39.8

Q ss_pred             eEEEEeeeeeecCCC-CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCC
Q 005588           19 VFKSGPLFISSKGIG-WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNS   78 (689)
Q Consensus        19 V~KeG~L~l~KkG~~-~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~   78 (689)
                      -..+||||+.|.-+. ...|+|.||||.+..|++|.+.....    .+..+.|-.+.|...
T Consensus       562 G~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~y~n~~~~~----~e~~i~l~~~~i~~a  618 (638)
T KOG1738|consen  562 GDRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLNYRNHRVRA----AESVIKLPLFTISVA  618 (638)
T ss_pred             chhhccchhhccchHHHHHhhhheeeecCchhhhhhhhhhhc----hhheeeccchhhhhH
Confidence            456788887776532 46699999999999999999987665    333444555544443

>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli

Probab=86.97  E-value=1.1  Score=39.76  Aligned_cols=49  Identities=29%  Similarity=0.411  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHH------HHHHHHHHHHhhc-cCCCcccCCCccCCccccchhHHHHHHH
Q 005588          623 RLALEQDVSRLQEQLQ------AERDLRAALEVGL-SMSSGQFSSSRGMDSKVCTDHKRFVSFL  679 (689)
Q Consensus       623 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~gl-~~~~~~~~~~~~~d~~~~~~lee~~~~~  679 (689)
                      ...|+++.++|||||.      +||==|.||++|| +|-        .-|....+.+||||.-+
T Consensus         4 ~s~I~~eIekLqe~lk~~e~keaERigr~AlKaGL~eie--------I~d~eL~~~FeeIa~RF   59 (92)
T PF07820_consen    4 SSKIREEIEKLQEQLKQAETKEAERIGRIALKAGLGEIE--------ISDAELQAAFEEIAARF   59 (92)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc--------CCHHHHHHHHHHHHHHH
Confidence            3568888999999985      6999999999999 543        22456678888888653

The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation

>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain

Probab=86.36  E-value=4.4  Score=37.27  Aligned_cols=82  Identities=17%  Similarity=0.150  Sum_probs=56.5

Q ss_pred             cEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCCCCCcEEEEEecChHHHHHH
Q 005588           37 WKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEW  116 (689)
Q Consensus        37 WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~~~~rty~fqAdSeeE~~eW  116 (689)
                      =..||++|-.+.|++....+... --.-+..++|.++.++....   ....++.|.|+.  +--....+.|.+.+|..+|
T Consensus        28 ~~eRyLvLFp~~LlilS~s~r~s-Gf~yqGkLPL~~i~v~~lEd---~e~~~~aFeI~G--~li~~i~v~C~~~~e~~~W  101 (111)
T cd01225          28 KRERYLVLFPNVLLMLSASPRMS-GFIYQGKLPLTGIIVTRLED---TEALKNAFEISG--PLIERIVVVCNNPQDAQEW  101 (111)
T ss_pred             cceeEEEEcCceEEEEEcCCCcc-ceEEeeeecccccEEechHh---ccCccceEEEec--cCcCcEEEEeCCHHHHHHH
Confidence            36899999999998887654322 01123446777777775322   134457788863  3345788999999999999


Q ss_pred             HHHHHHHH
Q 005588          117 KTALELAL  124 (689)
Q Consensus       117 i~AL~~ai  124 (689)
                      +..|++-+
T Consensus       102 l~hL~~~~  109 (111)
T cd01225         102 VELLNANN  109 (111)
T ss_pred             HHHHHhhc
Confidence            99998743

Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.36  E-value=12  Score=40.75  Aligned_cols=64  Identities=28%  Similarity=0.357  Sum_probs=45.2

Q ss_pred             HhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Q 005588          586 RLEITKNDLRHRIAKEARGNAILQASLERRKQALHE-------RRLALEQDVSRLQEQLQAE-RDLRAALEV  649 (689)
Q Consensus       586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  649 (689)
                      =.++....|+.|..+|+-.+-.+|++|.||++.|.+       -+.+|||.+..||++.--= +-.|.|||-
T Consensus       211 visa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~  282 (365)
T KOG2391|consen  211 VISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEK  282 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence            356677789999999999999999999999887665       4556666666666554311 222346664

>PF15411 PH_10: Pleckstrin homology domain

Probab=84.12  E-value=13  Score=34.55  Aligned_cols=86  Identities=21%  Similarity=0.221  Sum_probs=58.5

Q ss_pred             CCcEEEEEEEeCCeEEEEcCCCCCCCC---------CCceeeeee-CcEEcCCCcceeecc-CCcceEEEEe-CCCCCcE
Q 005588           35 KSWKKRWFILTRTSLVFFKNDPSALPQ---------RGGEVNLTL-GGIDLNNSGSVVVRE-DKKLLTVLFP-DGRDGRA  102 (689)
Q Consensus        35 k~WkKRWFVL~~~~L~YYKd~~~~~p~---------~~~e~~l~L-~~I~L~~~~sv~~~~-~kk~~FvI~~-~~~~~rt  102 (689)
                      ..|+-+.|-|-...|.++|+.......         +.....+.| |.|.+.+...+.... ...+.-.|.. ..+.--.
T Consensus        19 ~~erE~~vYLFe~illc~kE~~~~~~~~~~~~~~~~~~~~~~L~LKGrI~i~~i~~v~~~s~~g~~~L~i~w~~d~e~~~   98 (116)
T PF15411_consen   19 DSEREYEVYLFEKILLCCKEVKPKKKKSKQISSKKKKKKKTKLQLKGRIYISNITEVSSSSKPGSYSLQISWKGDPELEN   98 (116)
T ss_pred             CcceeeeeeeeeeeEEEEecCccCccchhhcccccccCCCceEEEeeEEEEEeeeeeeccCCCCceEEEEEEcCCCCCce
Confidence            469999999999999999987665432         122333444 447777776655433 2334444444 2334568


Q ss_pred             EEEEecChHHHHHHHHHH
Q 005588          103 FTLKAETSEDLYEWKTAL  120 (689)
Q Consensus       103 y~fqAdSeeE~~eWi~AL  120 (689)
                      |+|...+++.|..|-.+|
T Consensus        99 F~lrf~nee~l~~W~~~L  116 (116)
T PF15411_consen   99 FTLRFRNEEQLEQWRSAL  116 (116)
T ss_pred             EEEEeCCHHHHHHHHhhC
Confidence            999999999999998875

>KOG4047 consensus Docking protein 1 (p62dok) [Signal transduction mechanisms]

Probab=83.93  E-value=0.53  Score=52.72  Aligned_cols=103  Identities=15%  Similarity=-0.021  Sum_probs=59.3

Q ss_pred             CceEEEEeeeeeecCCCCCCcEEEEEEEeCC------eEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC---C
Q 005588           17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRT------SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED---K   87 (689)
Q Consensus        17 ~~V~KeG~L~l~KkG~~~k~WkKRWFVL~~~------~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~---k   87 (689)
                      +..+|.|+++++....+.|.|.++|++|..+      .|.+|..++.... +... .+.-+.+.++++.+|.....   .
T Consensus         6 ~~~~k~g~~~~~~~r~~~k~~~~~~~~L~~gs~~g~aRle~~~~~g~~~~-~~~~-~~~rR~~~ls~~~S~e~~~~~~~~   83 (429)
T KOG4047|consen    6 SCLVKDGVPDNHRNKFKVKNVRDDGAELGSGSMELTARLEILESRGRESV-RWPY-RCLRRYGYLSNLFSFESGRRCQTG   83 (429)
T ss_pred             CcccccCccchhhhhhccccccccceeeeccccccchhhhhhhccCCccc-ccch-hcceeeEeeccceeeecccccccC
Confidence            4568999999888888889999999999875      3334433322211 1111 11125577777666543211   1


Q ss_pred             cceEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHH
Q 005588           88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL  124 (689)
Q Consensus        88 k~~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai  124 (689)
                      ...|+++......   +|-+...-+...|+++|....
T Consensus        84 ~~i~~~f~~~a~e---~~~~~q~l~~~~w~~~i~~~~  117 (429)
T KOG4047|consen   84 PGITAFFCDRAEE---LFNMLQDLMQANWINAIEEPA  117 (429)
T ss_pred             CCceEEEecchHH---HHHHHHHHHhhhhhhhhhhcc
Confidence            1222222211111   566666677888999987654

>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]

Probab=82.04  E-value=0.87  Score=49.84  Aligned_cols=107  Identities=21%  Similarity=0.237  Sum_probs=66.8

Q ss_pred             CceEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec-------cCCcc
Q 005588           17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-------EDKKL   89 (689)
Q Consensus        17 ~~V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~-------~~kk~   89 (689)
                      ..|-+-|||--+-.+.+...|+.-+++|+...|.+|.+-+.+..    .+.-+.....|.-..-|...       ..-..
T Consensus       290 ~evkHiGWLaeq~~~~G~~~w~P~l~~lTekelliYes~P~~ke----aws~P~~~ypLvaTRLvhsg~~~~s~~~g~~l  365 (506)
T KOG3551|consen  290 SEVKHIGWLAEQVSGGGISQWKPKLMALTEKELLIYESMPWTKE----AWSRPRHTYPLVATRLVHSGSGKGSVIKGLTL  365 (506)
T ss_pred             cchhhhhhHHhhccCCChhhhhhheeeechhhhhhhhcChhhHH----HhcChhhhhhhhhhhheecCCCCCCCcCCceE
Confidence            36777796665555677889999999999999999988665432    11123333332211111110       11113


Q ss_pred             eEEEEeCCCCC-cEEEEEecChHHHHHHHHHHHHHHhhC
Q 005588           90 LTVLFPDGRDG-RAFTLKAETSEDLYEWKTALELALAQA  127 (689)
Q Consensus        90 ~FvI~~~~~~~-rty~fqAdSeeE~~eWi~AL~~ai~~a  127 (689)
                      .|..-+.++.| .+|+|.++|..|+-.|...|-.--++|
T Consensus       366 sFa~RtGTrqGV~thlfrvEThrdLa~WtRslVqGch~A  404 (506)
T KOG3551|consen  366 SFATRTGTRQGVETHLFRVETHRELAAWTRSLVQGCHEA  404 (506)
T ss_pred             EEEEecccccceEEEEEEeccHHHHHHHHHHHHHHHHHH
Confidence            45554444433 699999999999999998886554433

>KOG0517 consensus Beta-spectrin [Cytoskeleton]

Probab=80.45  E-value=0.034  Score=69.83  Aligned_cols=105  Identities=24%  Similarity=0.329  Sum_probs=67.3

Q ss_pred             CCCceEEEEeeeeeec------CCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCc---EEcCCCcc-ee-e
Q 005588           15 ASNTVFKSGPLFISSK------GIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGG---IDLNNSGS-VV-V   83 (689)
Q Consensus        15 ~~~~V~KeG~L~l~Kk------G~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~---I~L~~~~s-v~-~   83 (689)
                      +......+|+||.+.-      ...-+.|.+-||++..+.+.||+|.+....  +  +.+..++   ..+..+.. +. .
T Consensus      2295 ~~~w~~~eG~L~Rk~~~~A~e~k~~nRsw~~vy~~i~e~el~fykD~k~~~a--~--ve~~~r~e~~lel~~a~i~~a~d 2370 (2473)
T KOG0517|consen 2295 NSAWRQLEGFLYRKHLLGALEIKASNRSWDNVYCRIREKELGFYKDAKKDLA--S--VELLVRGEPPLELDMAAIEVASD 2370 (2473)
T ss_pred             CcHHHHHHhHHHHHHHHhhhhhhhhcccHHHHHHHHHhccchhhcccCcccc--c--chhhccCCcchhcchhHHHHHHH
Confidence            3344577899974421      123577999999999999999999765331  1  0111111   11111111 11 1


Q ss_pred             ccCCcceEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHHh
Q 005588           84 REDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA  125 (689)
Q Consensus        84 ~~~kk~~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~  125 (689)
                      ..++++.|.+.  .++|..|.|+|.++++|+.|+.++....+
T Consensus      2371 y~kkk~v~~l~--~~~gae~llq~k~ee~m~sWL~~~a~~~~ 2410 (2473)
T KOG0517|consen 2371 YHKKKHVFLLQ--LPPGAEHLLQAKDEEEMESWLRALAVKRA 2410 (2473)
T ss_pred             HHHHhHhhhhc--CCchHHHHHhhccHHHHHHHHHHHHHHHH
Confidence            13455666665  46799999999999999999999887775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	689
3fk2_A	246	Crystal Structure Of The Rhogap Domain Of Human Glu		7e-14
3kuq_A	228	Crystal Structure Of The Dlc1 Rhogap Domain Length		2e-11
3byi_A	214	Crystal Structure Of Human Rho Gtpase Activating Pr		2e-11
3msx_B	201	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		2e-11
2ee5_A	219	Solution Structure Of The N-Teruminus Extended Rhog		4e-10
2ee4_A	209	Solution Structure Of The Rhogap Domain From Human		6e-10
1ow3_A	242	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		1e-09
1am4_A	199	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		5e-09
1grn_B	203	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX		6e-09
2ngr_B	234	Transition State Complex For Gtp Hydrolysis By Cdc4		9e-09
1tx4_A	198	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198		1e-08
1f7c_A	231	Crystal Structure Of The Bh Domain From Graf, The G		3e-08
3iug_A	229	Crystal Structure Of The Rhogap Domain Of Rics Leng		2e-05
3eap_A	271	Crystal Structure Of The Rhogap Domain Of Arhgap11a		2e-04

>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human Glucocorticoid Receptor Dna-Binding Factor 1 Length = 246

Iteration: 1
 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 167 GRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFS 226
           G P+   +      P F+E+ + ++E  G   EGI R + +  E++   ++++Q      
Sbjct: 55  GVPLTTVVTPEKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDL 114
Query: 227 ADEDAHV--IGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPE 284
           A++D  V  +   +K    ELP   VP +    L+EA+KI+ +E ++ A++  +L+ FP+
Sbjct: 115 AEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKE-VLKKFPK 173
Query: 285 PNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRP 325
            N  + + ++  ++ +S +   N MT   ++ C  P L+RP
Sbjct: 174 ENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLMRP 214

>pdb|3KUQ|A Chain A, Crystal Structure Of The Dlc1 Rhogap Domain Length = 228

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 76/149 (51%), Gaps = 12/149 (8%)
Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSAD------EDAHVI 234
           P  +++A+R+L        G+ R++     V  R+Q   Q   E + D      + A+ +
Sbjct: 37  PQSIQQAMRYLRNHCLDQVGLFRKSG----VKSRIQALRQ-MNEGAIDCVNYEGQSAYDV 91
Query: 235 GDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRIL 294
            D +K   R+LP   +        L+ Y+   K+ R+ A+++AI+   P+ NR +LQ +L
Sbjct: 92  ADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAIM-LLPDENREVLQTLL 150
Query: 295 RMMHTISSHAHENRMTPSAVAACMAPLLL 323
             +  +++   EN+MTP+ +A C+AP L 
Sbjct: 151 YFLSDVTAAVKENQMTPTNLAVCLAPSLF 179

>pdb|3BYI|A Chain A, Crystal Structure Of Human Rho Gtpase Activating Protein 15 (arhgap15) Length = 214

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 4/147 (2%)
Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRR---VQEYEQGKTEFSADEDAHVIGDC 237
           P F+++ +  +EK G  V+GI R + ++  + +    V + E+   + S  ED HV+   
Sbjct: 36  PWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGA 95
Query: 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMM 297
           +K   RELP    P S     +EA K      RI A++S +++  P PNR  ++ +   +
Sbjct: 96  LKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKS-LVQKLPPPNRDTMKVLFGHL 154
Query: 298 HTISSHAHENRMTPSAVAACMAPLLLR 324
             I + A +N M+  ++     P LLR
Sbjct: 155 TKIVAKASKNLMSTQSLGIVFGPTLLR 181

>pdb|3MSX|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 201

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 3/161 (1%)
Query: 178 DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSAD-EDAHVIGD 236
           D  P  +   L FL + G   +GI RQ+A+V+   R ++E      E   D E   VI  
Sbjct: 24  DNLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSC-RELKEKLNSGVEVHLDCESIFVIAS 82
Query: 237 CVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRM 296
            +K  LR +P S   +      +        E +I+ ++  +L+  P  N  LL+ +  +
Sbjct: 83  VLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQR-LLDQLPRANVVLLRYLFGV 141
Query: 297 MHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDF 337
           +H I  H+  N+MT   +A C+AP +L P  +   ELE++F
Sbjct: 142 LHNIEQHSSSNQMTAFNLAVCVAPSILWPPASSSPELENEF 182

>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap Domain From Human Rho Gtpase Activating Protein 5 Variant Length = 219

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT--EFSADEDAHVIGDCV 238
           P F+EK + F+E  G   EG+ R + +  + D   ++++Q       S +   + +   +
Sbjct: 38  PLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGAL 97
Query: 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMH 298
           K    +LP   +P S    LLEA KI  K  R+ A++  I++ F   N  + + ++  ++
Sbjct: 98  KAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKE-IVKKFHPVNYDVFRYVITHLN 156
Query: 299 TISSHAHENRMTPSAVAACMAPLLLRP 325
            +S     N MT   ++ C  P L+RP
Sbjct: 157 RVSQQHKINLMTADNLSICFWPTLMRP 183

>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho Gtpase Activating Protein 5 Variant Length = 209

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT--EFSADEDAHVIGDCV 238
           P F+EK + F+E  G   EG+ R + +  + D   ++++Q       S +   + +   +
Sbjct: 28  PLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGAL 87
Query: 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMH 298
           K    +LP   +P S    LLEA KI  K  R+ A++  I++ F   N  + + ++  ++
Sbjct: 88  KAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKE-IVKKFHPVNYDVFRYVITHLN 146
Query: 299 TISSHAHENRMTPSAVAACMAPLLLRP 325
            +S     N MT   ++ C  P L+RP
Sbjct: 147 RVSQQHKINLMTADNLSICFWPTLMRP 173

>pdb|1OW3|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 242

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 3/144 (2%)
Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEFSADEDAHVIGDCVK 239
           P  L + + +L+      EGI R++A+ + V    Q+Y  G   +F    + H+    +K
Sbjct: 63  PIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILK 122
Query: 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHT 299
             LRELP   +       ++    ID  + R+ A    +L+T PE N ++L+ +   +  
Sbjct: 123 TFLRELPEPLLTFDLYPHVVGFLNIDESQ-RVPATLQ-VLQTLPEENYQVLRFLTAFLVQ 180
Query: 300 ISSHAHENRMTPSAVAACMAPLLL 323
           IS+H+ +N+MT + +A    P LL
Sbjct: 181 ISAHSDQNKMTNTNLAVVFGPNLL 204

>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 199

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 3/144 (2%)
Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEFSADEDAHVIGDCVK 239
           P  L + + +L+      EGI R++A+ + V    Q+Y  G   +F    + H+    +K
Sbjct: 28  PIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILK 87
Query: 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHT 299
             LRELP   +       ++    ID  + R+ A    +L+T PE N ++L+ +   +  
Sbjct: 88  TFLRELPEPLLTFDLYPHVVGFLNIDESQ-RVPATLQ-VLQTLPEENYQVLRFLTAFLVQ 145
Query: 300 ISSHAHENRMTPSAVAACMAPLLL 323
           IS+H+ +N+MT + +A    P LL
Sbjct: 146 ISAHSDQNKMTNTNLAVVFGPNLL 169

>pdb|1GRN|B Chain B, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX Length = 203

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 3/144 (2%)
Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEFSADEDAHVIGDCVK 239
           P  L + + +L+      EGI R++A+ + V    Q+Y  G   +F    + H+    +K
Sbjct: 24  PIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILK 83
Query: 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHT 299
             LRELP   +       ++    ID  + R+ A    +L+T PE N ++L+ +   +  
Sbjct: 84  TFLRELPEPLLTFDLYPHVVGFLNIDESQ-RVPATLQ-VLQTLPEENYQVLRFLTAFLVQ 141
Query: 300 ISSHAHENRMTPSAVAACMAPLLL 323
           IS+H+ +N+MT + +A    P LL
Sbjct: 142 ISAHSDQNKMTNTNLAVVFGPNLL 165

>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42: Comparisons Of The High Resolution Structures For Cdc42 Bound To The Active And Catalytically Compromised Forms Of The Cdc42-gap Length = 234

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 3/144 (2%)
Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEFSADEDAHVIGDCVK 239
           P  L + + +L+      EGI  ++A+ + V    Q+Y  G   +F    + H+    +K
Sbjct: 55  PIVLRETVAYLQAHALTTEGIFARSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVILK 114
Query: 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHT 299
             LRELP   +       ++    ID  + R+ A    +L+T PE N ++L+ +   +  
Sbjct: 115 TFLRELPEPLLTFDLYPHVVGFLNIDESQ-RVPATLQ-VLQTLPEENYQVLRFLTAFLVQ 172
Query: 300 ISSHAHENRMTPSAVAACMAPLLL 323
           IS+H+ +N+MT + +A    P LL
Sbjct: 173 ISAHSDQNKMTNTNLAVVFGPNLL 196

>pdb|1TX4|A Chain A, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 3/144 (2%)
Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEFSADEDAHVIGDCVK 239
           P  L + + +L+      EGI R++A+ + V    Q+Y  G   +F      H+    +K
Sbjct: 27  PIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHLPAVILK 86
Query: 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHT 299
             LRELP   +       ++    ID  + R+ A    +L+T PE N ++L+ +   +  
Sbjct: 87  TFLRELPEPLLTFDLYPHVVGFLNIDESQ-RVPATLQ-VLQTLPEENYQVLRFLTAFLVQ 144
Query: 300 ISSHAHENRMTPSAVAACMAPLLL 323
           IS+H+ +N+MT + +A    P LL
Sbjct: 145 ISAHSDQNKMTNTNLAVVFGPNLL 168

>pdb|1F7C|A Chain A, Crystal Structure Of The Bh Domain From Graf, The Gtpase Regulator Associated With Focal Adhesion Kinase Length = 231

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 75/156 (48%), Gaps = 15/156 (9%)
Query: 180 GPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEY----------EQGKTEFSADE 229
           G S ++K +  +E  G   +G+ R       V+ RVQ+            + +TE  A+ 
Sbjct: 37  GFSIIKKCIHAVETRGINEQGLYRIVG----VNSRVQKLLSILMDPKTATETETEICAEW 92
Query: 230 DAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRL 289
           +   I   +K  LR LP   +      + ++A K++ +E+R+S + S ++   PE NR++
Sbjct: 93  EIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHS-LVHRLPEKNRQM 151
Query: 290 LQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRP 325
           L  ++  +  ++ +  +N MT + +     P LLRP
Sbjct: 152 LHLLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRP 187

>pdb|3IUG|A Chain A, Crystal Structure Of The Rhogap Domain Of Rics Length = 229

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 6/148 (4%)
Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK----TEFSADEDAHVIGD 236
           P  L+    F+E++G  V+GI R +     + R   E++       T+    +D H +G 
Sbjct: 38  PQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGS 96
Query: 237 CVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRM 296
             K   RELP+  +         +A      E R+  +   I +  P P+ R L+ ++R 
Sbjct: 97  LCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVI-QQLPPPHYRTLEFLMRH 155
Query: 297 MHTISSHAHENRMTPSAVAACMAPLLLR 324
           +  ++ +     M    +A   AP LLR
Sbjct: 156 LSLLADYCSITNMHAKNLAIVWAPNLLR 183

>pdb|3EAP|A Chain A, Crystal Structure Of The Rhogap Domain Of Arhgap11a Length = 271

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 4/144 (2%)
Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKH 240
           PSFL  A   LE      EG+ R++  V  +     + + G+   S+     + G  +K 
Sbjct: 84  PSFLVDACTSLEDH-IHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIAG-LLKQ 141
Query: 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTI 300
             RELP   +PA    ALL+A ++  +E   + +  + L    +    +L+     +  +
Sbjct: 142 FFRELPEPILPADLHEALLKAQQLGTEEKNKATLLLSCL--LADHTVHVLRYFFNFLRNV 199
Query: 301 SSHAHENRMTPSAVAACMAPLLLR 324
           S  + EN+M  S +A   AP LL+
Sbjct: 200 SLRSSENKMDSSNLAVIFAPNLLQ 223

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	689
3msx_B	201	RHO GTPase-activating protein 20; protein-proten c	9e-34
1ow3_A	242	RHO-GTPase-activating protein 1; complex, GTPase,	2e-33
1tx4_A	198	P50-rhogap; complex (GTPase activation/proto-oncog	2e-33
3kuq_A	228	RHO GTPase-activating protein 7; structural genomi	3e-31
3byi_A	214	RHO GTPase activating protein 15; BM046, arhgap15,	5e-31
3fk2_A	246	Glucocorticoid receptor DNA-binding factor 1; stru	9e-31
2ee4_A	209	RHO GTPase activating protein 5 variant; all alpha	1e-30
1f7c_A	231	Rhogap protein; GTPase activating protein, RHO GTP	4e-29
3eap_A	271	RHO GTPase-activating protein 11A; GAP, structural	5e-29
3iug_A	229	RHO/CDC42/RAC GTPase-activating protein RICS; stru	1e-27
2osa_A	202	N-chimaerin; RHO-GAP, GTPase activation, structura	2e-26
1pbw_A	216	Rhogap domain, phosphatidylinositol 3-kinase; phos	2e-25
2ovj_A	201	Mgcracgap, RAC GTPase-activating protein 1; signal	2e-25
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	7e-25
3qis_A	366	Inositol polyphosphate 5-phosphatase OCRL-1; DENT	2e-23
2xs6_A	214	Phosphatidylinositol 3-kinase regulatory subunit;	1e-20
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	1e-19
2d9v_A	130	Pleckstrin homology domain-containing protein fami	5e-19
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	5e-17
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	4e-15
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	7e-15
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	2e-14
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	2e-14
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	2e-14
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	2e-14
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	2e-14
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	3e-14
3cxb_B	112	Pleckstrin homology domain-containing family M mem	5e-14
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	8e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	2e-13
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	2e-13
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	3e-13
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	3e-13
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	6e-13
2dkp_A	128	Pleckstrin homology domain-containing family A mem	6e-13
2d9y_A	117	Pleckstrin homology domain-containing protein fami	9e-13
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	1e-12
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	1e-12
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	2e-12
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	3e-12
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	3e-12
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	3e-12
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	4e-12
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	5e-12
2yry_A	122	Pleckstrin homology domain-containing family A mem	6e-12
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	1e-11
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	1e-11
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	1e-11
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	1e-11
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	2e-11
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	2e-11
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	4e-11
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	1e-10
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	1e-10
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	1e-10
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	2e-10
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	6e-10
1wi1_A	126	Calcium-dependent activator protein for secretion,	1e-09
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	2e-09
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	3e-09
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	4e-09
1qqg_A	264	IRS-1, insulin receptor substrate 1; beta-sandwhic	1e-08
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	2e-08
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	5e-08
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	5e-08
4f7h_A	173	Fermitin family homolog 2; beta-barrel, membrane b	6e-08
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	7e-08
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	9e-08
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	1e-07
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	3e-07
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	5e-06
2d9w_A	127	Docking protein 2; PH domain, structural genomics,	8e-06
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	1e-05
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	2e-05
2w2x_D	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	1e-04
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	1e-04

>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens} Length = 201

 Score =  127 bits (321), Expect = 9e-34
 Identities = 49/213 (23%), Positives = 83/213 (38%), Gaps = 18/213 (8%)

Query: 160 PVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYE 219
           P+   + G  +    E+ D  P  +   L FL + G   +GI RQ+A+V+      ++  
Sbjct: 7   PMPGQLFGISLPNICEN-DNLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKLN 65

Query: 220 QGKTEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAIL 279
            G       E   VI   +K  LR +P S   +      +        E +I+ ++  +L
Sbjct: 66  SGVEVHLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQR-LL 124

Query: 280 ETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDM 339
           +  P  N  LL+ +  ++H I  H+  N+MT   +A C+AP +L P              
Sbjct: 125 DQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVAPSILWP-------------- 170

Query: 340 NGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372
               S+              +I  L+E    IF
Sbjct: 171 --PASSSPELENEFTKKVSLLIQFLIENCLRIF 201

>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B* Length = 242

 Score =  127 bits (321), Expect = 2e-33
 Identities = 50/258 (19%), Positives = 97/258 (37%), Gaps = 26/258 (10%)

Query: 122 LALAQAPSAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPILLALEDIDGG- 180
           + L Q      V+ ++   ++    +   +      + P+ +   G  +    E      
Sbjct: 2   VKLEQLGIPRQVLKYDDFLKSTQK-SPATAPKPMPPRPPLPNQQFGVSLQHLQEKNPEQE 60

Query: 181 --PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDC 237
             P  L + + +L+      EGI R++A+ + V    Q+Y  G   +F    + H+    
Sbjct: 61  PIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLPAVI 120

Query: 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMM 297
           +K  LRELP   +       ++    ID  + R+ A    +L+T PE N ++L+ +   +
Sbjct: 121 LKTFLRELPEPLLTFDLYPHVVGFLNIDESQ-RVPATL-QVLQTLPEENYQVLRFLTAFL 178

Query: 298 HTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNA 357
             IS+H+ +N+MT + +A    P LL          +D        +             
Sbjct: 179 VQISAHSDQNKMTNTNLAVVFGPNLLWA--------KDAAITLKAINPI----------- 219

Query: 358 QAIIATLLEEYENIFDDE 375
                 LL+    +F   
Sbjct: 220 NTFTKFLLDHQGELFPSP 237

>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B* Length = 198

 Score =  126 bits (318), Expect = 2e-33
 Identities = 47/219 (21%), Positives = 85/219 (38%), Gaps = 25/219 (11%)

Query: 158 KRPVKSLVVGRPILLALEDIDGG---PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRR 214
           + P+ +   G  +    E        P  L + + +L+      EGI R++A+ + V   
Sbjct: 1   RPPLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREV 60

Query: 215 VQEYEQGKT-EFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISA 273
            Q+Y  G   +F      H+    +K  LRELP   +       ++    ID  + R+ A
Sbjct: 61  QQKYNMGLPVDFDQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQ-RVPA 119

Query: 274 MRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECEL 333
               +L+T PE N ++L+ +   +  IS+H+ +N+MT + +A    P LL          
Sbjct: 120 TL-QVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWA-------- 170

Query: 334 EDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372
           +D        +                   LL+    +F
Sbjct: 171 KDAAITLKAINPI-----------NTFTKFLLDHQGELF 198

>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens} Length = 228

 Score =  120 bits (304), Expect = 3e-31
 Identities = 47/224 (20%), Positives = 98/224 (43%), Gaps = 14/224 (6%)

Query: 156 RDKRPVKSLVVGRPILLALEDIDGG--PSFLEKALRFLEKFGTKVEGILRQAADVEEVDR 213
           R+    +  V G P+ + ++   G   P  +++A+R+L        G+ R++     +  
Sbjct: 11  RENLYFQGSVFGVPLTVNVQR-TGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQA 69

Query: 214 RVQEYEQGKTEFS-ADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARIS 272
             Q  E      +   + A+ + D +K   R+LP   +        L+ Y+   K+ R+ 
Sbjct: 70  LRQMNEGAIDCVNYEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQ 129

Query: 273 AMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECE 332
           A+++AI+   P+ NR +LQ +L  +  +++   EN+MTP+ +A C+AP L          
Sbjct: 130 AIKAAIML-LPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLAPSLFHL----NTL 184

Query: 333 LEDDFDMNGDNSAQLLAAANAANNAQAIIAT-----LLEEYENI 371
             ++         Q L   +  +  + + AT     ++ E + +
Sbjct: 185 KRENSSPRVMQRKQSLGKPDQKDLNENLAATQGLAHMIAECKKL 228

>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens} Length = 214

 Score =  120 bits (302), Expect = 5e-31
 Identities = 55/230 (23%), Positives = 93/230 (40%), Gaps = 25/230 (10%)

Query: 151 SFHQWRDKRPVKSLVVGRPILLALEDIDGG--PSFLEKALRFLEKFGTKVEGILRQAADV 208
           S    ++K  +K  + G  +    E  +    P F+++ +  +EK G  V+GI R + ++
Sbjct: 5   SLKTLQEKGLIKDQIFGSHLHKVCER-ENSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNL 63

Query: 209 EEVDRRVQEYEQGKTEFSAD---EDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKID 265
             + +      Q +     D   ED HV+   +K   RELP    P S     +EA K  
Sbjct: 64  ATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQ 123

Query: 266 RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRP 325
               RI A++S +++  P PNR  ++ +   +  I + A +N M+  ++     P LLR 
Sbjct: 124 DNNTRIEAVKS-LVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSLGIVFGPTLLRA 182

Query: 326 LLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE 375
                    +  +M      Q             I   +L EY  IF  E
Sbjct: 183 -------ENETGNMAIHMVYQ-----------NQIAELMLSEYSKIFGSE 214

>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens} Length = 246

 Score =  120 bits (302), Expect = 9e-31
 Identities = 46/222 (20%), Positives = 95/222 (42%), Gaps = 21/222 (9%)

Query: 156 RDKRPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRV 215
             K   +S   G P+   +      P F+E+ + ++E  G   EGI R + +  E++   
Sbjct: 44  ITKATWESNYFGVPLTTVVTPEKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQ 103

Query: 216 QEYEQG-KTEFSADE-DAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISA 273
           ++++Q    + +  +   + +   +K    ELP   VP +    L+EA+KI+ +E ++ A
Sbjct: 104 RQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHA 163

Query: 274 MRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECEL 333
           ++  +L+ FP+ N  + + ++  ++ +S +   N MT   ++ C  P L+RP        
Sbjct: 164 LK-EVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLMRP-------D 215

Query: 334 EDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE 375
               D                   Q II   +++    F + 
Sbjct: 216 FSTMDALTATRTY-----------QTIIELFIQQCPFFFYNR 246

>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A Length = 209

 Score =  118 bits (298), Expect = 1e-30
 Identities = 42/199 (21%), Positives = 86/199 (43%), Gaps = 21/199 (10%)

Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT--EFSADEDAHVIGDCV 238
           P F+EK + F+E  G   EG+ R + +  + D   ++++Q       S +   + +   +
Sbjct: 28  PLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGAL 87

Query: 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMH 298
           K    +LP   +P S    LLEA KI  K  R+ A++  I++ F   N  + + ++  ++
Sbjct: 88  KAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALK-EIVKKFHPVNYDVFRYVITHLN 146

Query: 299 TISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQ 358
            +S     N MT   ++ C  P L+RP         ++ +                   Q
Sbjct: 147 RVSQQHKINLMTADNLSICFWPTLMRP-------DFENREFLSTTKIH-----------Q 188

Query: 359 AIIATLLEEYENIFDDESL 377
           +++ T +++ +  F +  +
Sbjct: 189 SVVETFIQQCQFFFYNGEI 207

>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1 Length = 231

 Score =  114 bits (288), Expect = 4e-29
 Identities = 49/232 (21%), Positives = 89/232 (38%), Gaps = 29/232 (12%)

Query: 154 QWRDKRPVKSLVVGRPILLALE----DIDGGPSFLEKALRFLEKFGTKVEGILRQAADVE 209
            W +    +  V         E        G S ++K +  +E  G   +G+ R      
Sbjct: 7   LWMEAMDGREPVYNSNKDNQSEGTAQLDSIGFSIIKKCIHAVETRGINEQGLYRIVGVNS 66

Query: 210 EVDRRVQEYEQGKT------EFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYK 263
            V + +      KT      E  A+ +   I   +K  LR LP   +      + ++A K
Sbjct: 67  RVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAK 126

Query: 264 IDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLL 323
           ++ +E+R+S + S +    PE NR++L  ++  +  ++ +  +N MT + +     P LL
Sbjct: 127 LENQESRVSEIHSLVHR-LPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFGPTLL 185

Query: 324 RPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE 375
           RP        E+      D   Q             +I  L+E +E IF+  
Sbjct: 186 RP-------QEETVAAIMDIKFQ-----------NIVIEILIENHEKIFNTV 219

>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens} Length = 271

 Score =  115 bits (291), Expect = 5e-29
 Identities = 42/192 (21%), Positives = 73/192 (38%), Gaps = 18/192 (9%)

Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKH 240
           PSFL  A   LE      EG+ R++  V  +     + + G+   S       I   +K 
Sbjct: 84  PSFLVDACTSLED-HIHTEGLFRKSGSVIRLKALKNKVDHGEGCLS-SAPPCDIAGLLKQ 141

Query: 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTI 300
             RELP   +PA    ALL+A ++  +E +  A    +     +    +L+     +  +
Sbjct: 142 FFRELPEPILPADLHEALLKAQQLGTEE-KNKATL-LLSCLLADHTVHVLRYFFNFLRNV 199

Query: 301 SSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAI 360
           S  + EN+M  S +A   AP LL+               +  +               A+
Sbjct: 200 SLRSSENKMDSSNLAVIFAPNLLQT--------------SEGHEKMSSNTEKKLRLQAAV 245

Query: 361 IATLLEEYENIF 372
           + TL++   +I 
Sbjct: 246 VQTLIDYASDIG 257

>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens} Length = 229

 Score =  110 bits (278), Expect = 1e-27
 Identities = 39/199 (19%), Positives = 71/199 (35%), Gaps = 18/199 (9%)

Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADE----DAHVIGD 236
           P  L+    F+E++G  V+GI R +     + R   E++         E    D H +G 
Sbjct: 38  PQVLQSCTAFIERYG-IVDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGS 96

Query: 237 CVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRM 296
             K   RELP+  +         +A      E R+  +   +++  P P+ R L+ ++R 
Sbjct: 97  LCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIH-DVIQQLPPPHYRTLEFLMRH 155

Query: 297 MHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANN 356
           +  ++ +     M    +A   AP LLR                        AA      
Sbjct: 156 LSLLADYCSITNMHAKNLAIVWAPNLLRS------------KQIESACFSGTAAFMEVRI 203

Query: 357 AQAIIATLLEEYENIFDDE 375
              ++  +L   + +F   
Sbjct: 204 QSVVVEFILNHVDVLFSGR 222

>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens} Length = 202

 Score =  106 bits (266), Expect = 2e-26
 Identities = 31/196 (15%), Positives = 73/196 (37%), Gaps = 22/196 (11%)

Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADE----DAHVIGD 236
           P  ++  +R +E  G   EG+ R +   + ++     +++   +         D ++I  
Sbjct: 25  PMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITG 84

Query: 237 CVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRM 296
            +K   R+LP   +        +E+ KI   + ++  +    L+  P  +   L+ ++  
Sbjct: 85  ALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLH-EALKLLPPAHCETLRYLMAH 143

Query: 297 MHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANN 356
           +  ++ H  EN M    +     P L+R                       +AA N    
Sbjct: 144 LKRVTLHEKENLMNAENLGIVFGPTLMRS-----------------PELDAMAALNDIRY 186

Query: 357 AQAIIATLLEEYENIF 372
            + ++  L++  + +F
Sbjct: 187 QRLVVELLIKNEDILF 202

>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1 Length = 216

 Score =  104 bits (261), Expect = 2e-25
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 29/203 (14%)

Query: 178 DGGPSFLEKALRFLEKFGTKVEGILRQ--AADVEEVDRRVQEYEQGKTEFS-ADEDAHVI 234
           D  P  L K +  +EK G +   + R   ++++ E+    Q  +           D HV+
Sbjct: 23  DIAPPLLIKLVEAIEKKGLECSTLYRTQSSSNLAEL---RQLLDCDTPSVDLEMIDVHVL 79

Query: 235 GDCVKHVLRELPSSPVPASCCTALLE-AYKIDRKEARISAMRSAI-LETFPEPNRRLLQR 292
            D  K  L +LP+  +PA+  + ++  A ++   E  I  ++  I   + P      LQ 
Sbjct: 80  ADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQY 139

Query: 293 ILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAAN 352
           +L+    +S  + +N +    ++   +P+L R         ++                 
Sbjct: 140 LLKHFFKLSQTSSKNLLNARVLSEIFSPMLFRF---SAASSDN----------------- 179

Query: 353 AANNAQAIIATLLEEYENIFDDE 375
              N   +I  L+    N     
Sbjct: 180 -TENLIKVIEILISTEWNERQPA 201

>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens} Length = 201

 Score =  103 bits (259), Expect = 2e-25
 Identities = 40/195 (20%), Positives = 73/195 (37%), Gaps = 19/195 (9%)

Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT--EFSADEDAHVIGDCV 238
           PS +   +  +E+ G    G+ R +     V    +++ + KT    S  +D H I   +
Sbjct: 18  PSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDIHAICSLL 77

Query: 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMH 298
           K  LR L    +      A +EA +I  ++  I+AM  A+ E  P+ NR  L  ++  + 
Sbjct: 78  KDFLRNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGE-LPQANRDTLAFLMIHLQ 136

Query: 299 TISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQ 358
            ++   H  +M  + +A    P ++           D   M  D   Q            
Sbjct: 137 RVAQSPH-TKMDVANLAKVFGPTIVAH----AVPNPDPVTMLQDIKRQ-----------P 180

Query: 359 AIIATLLEEYENIFD 373
            ++  LL      + 
Sbjct: 181 KVVERLLSLPLEYWS 195

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A Length = 463

 Score =  107 bits (269), Expect = 7e-25
 Identities = 31/196 (15%), Positives = 73/196 (37%), Gaps = 22/196 (11%)

Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADE----DAHVIGD 236
           P  ++  +R +E  G   EG+ R +   + ++     +++   +         D ++I  
Sbjct: 286 PMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITG 345

Query: 237 CVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRM 296
            +K   R+LP   +        +E+ KI   + ++  +    L+  P  +   L+ ++  
Sbjct: 346 ALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLH-EALKLLPPAHCETLRYLMAH 404

Query: 297 MHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANN 356
           +  ++ H  EN M    +     P L+R                       +AA N    
Sbjct: 405 LKRVTLHEKENLMNAENLGIVFGPTLMRS-----------------PELDAMAALNDIRY 447

Query: 357 AQAIIATLLEEYENIF 372
            + ++  L++  + +F
Sbjct: 448 QRLVVELLIKNEDILF 463

>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Length = 366

 Score =  101 bits (252), Expect = 2e-23
 Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 8/145 (5%)

Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKH 240
           P  +   +  L K+    E + +     EE+ + +   +      +     H + + +  
Sbjct: 200 PKEIWLLVDHLFKYACHQEDLFQTPGMQEELQQIIDCLDTSI-PETIPGSNHSVAEALLI 258

Query: 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTI 300
            L  LP   +        L++             R  ++   P  +R + + ++  +  +
Sbjct: 259 FLEALPEPVICYELYQRCLDSAY------DPRICRQ-VISQLPRCHRNVFRYLMAFLREL 311

Query: 301 SSHAHENRMTPSAVAACMAPLLLRP 325
              +  N +  + +A     LLLRP
Sbjct: 312 LKFSEYNSVNANMIATLFTSLLLRP 336

>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens} Length = 214

 Score = 90.3 bits (224), Expect = 1e-20
 Identities = 33/196 (16%), Positives = 60/196 (30%), Gaps = 21/196 (10%)

Query: 178 DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDC 237
           D  P  L K +  +E+ G   E   R        D  + + +Q         D   + D 
Sbjct: 38  DVAPPLLVKLVEAIERTGLDSESHYRPELPAPRTDWSLSDVDQ--------WDTAALADG 89

Query: 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMM 297
           +K  L  LP+  V          A +        +        T P      L+ +L+ +
Sbjct: 90  IKSFLLALPAPLVTPEASAEARRALREAAGPVGPALE----PPTLPLHRALTLRFLLQHL 145

Query: 298 HTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNA 357
             ++  A        A+ A   PLLLR               +         +  + +  
Sbjct: 146 GRVARRAPALGPAVRALGATFGPLLLRAP---------PPPSSPPPGGAPDGSEPSPDFP 196

Query: 358 QAIIATLLEEYENIFD 373
             ++  LL+E+    +
Sbjct: 197 ALLVEKLLQEHLEEQE 212

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A Length = 112

 Score = 84.2 bits (208), Expect = 1e-19
 Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 8/113 (7%)

Query: 15  ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTS-LVFFKNDPSALPQRGGEVNLTLGGI 73
            S    KSG L    +    K WKK WF L     L+++ +      +   +V++ +  I
Sbjct: 1   GSMAFVKSGWLL--RQSTILKRWKKNWFDLWSDGHLIYYDDQTRQNIE--DKVHMPMDCI 56

Query: 74  DL---NNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123
           ++            + K    +L    RDG+  +L AE+++D   WK  L+ +
Sbjct: 57  NIRTGQECRDTQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDS 109

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score = 82.7 bits (204), Expect = 5e-19
 Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 4/122 (3%)

Query: 15  ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRT-SLVFFKNDPSALPQRGGEVNLTLGGI 73
            S+ + + G L+   +    + WK+ WF L    +L ++ ++ +   +    ++  +  I
Sbjct: 4   GSSGLVRGGWLWR--QSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDI 61

Query: 74  DLNNS-GSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAAL 132
            +      V   E +    +L  + R+G    L AET +D   WKTAL  A +    A  
Sbjct: 62  KVGQECQDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANSTPAPAGA 121

Query: 133 VM 134
            +
Sbjct: 122 TV 123

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A Length = 125

 Score = 76.6 bits (188), Expect = 5e-17
 Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 9/112 (8%)

Query: 16  SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDL 75
              V + G L I++ GI     K+ WF+LT  +L ++K+D     ++  +  L++  + L
Sbjct: 9   EILVIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDD----EEKEKKYMLSVDNLKL 64

Query: 76  NNSGSVVVREDKKLLTVLFPDGR----DGRAFTLKAETSEDLYEWKTALELA 123
            +     +   K +  +   + R    D R   L  ET E++  WK +   A
Sbjct: 65  RDVEKGFMSS-KHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRA 115

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A Length = 126

 Score = 71.3 bits (175), Expect = 4e-15
 Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 18/119 (15%)

Query: 12  RPGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLG 71
            P A +   K G  +++ +G   K+WK RWF L R  L +FK+  S  P         + 
Sbjct: 11  VPTAPSLGTKEG--YLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEP---------IR 59

Query: 72  GIDLNNSGSVVVREDKK---LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127
            +DL    +V     ++      ++FP     R F L A+T  +  EW   L   L+Q 
Sbjct: 60  ILDLTECSAVQFDYSQERVNCFCLVFPF----RTFYLCAKTGVEADEWIKILRWKLSQI 114

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 118

 Score = 70.5 bits (173), Expect = 7e-15
 Identities = 22/125 (17%), Positives = 48/125 (38%), Gaps = 20/125 (16%)

Query: 15  ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGID 74
            S+   K G  ++  +    K+W++R+F+L    L ++K++    P          G + 
Sbjct: 4   GSSGPIKMG--WLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKP---------QGCMY 52

Query: 75  LNNSGSVVVREDK--------KLLTVLFPDGRDG-RAFTLKAETSEDLYEWKTALELALA 125
           L       +  +         +++   +   R G  ++ L A +  ++ EW   L     
Sbjct: 53  LPGCTIKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAG 112

Query: 126 QAPSA 130
             PS+
Sbjct: 113 SGPSS 117

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1 Length = 125

 Score = 69.8 bits (171), Expect = 2e-14
 Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 21/122 (17%)

Query: 11  PRPGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTL 70
           P+P   + V K+G  +   +G   K+WK+R+F L   ++ +FK++    P         L
Sbjct: 6   PKPPQDSAVIKAG--YCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEP---------L 54

Query: 71  GGIDLNNSGSVVVREDKKLL------TVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124
             I L     V   +   ++       ++       R F ++A++ E+++ W  A+  A+
Sbjct: 55  RVIPLKEVHKVQECKQSDIMMRDNLFEIVTTS----RTFYVQADSPEEMHSWIKAVSGAI 110

Query: 125 AQ 126
             
Sbjct: 111 VA 112

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 126

 Score = 69.6 bits (170), Expect = 2e-14
 Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 8/106 (7%)

Query: 30  KGIGWKSWKKRWFILTR--TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDK 87
                  + +R+FIL      L+++ ++P  L    G     +G + L     V +   K
Sbjct: 25  DNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGA----VGSLQLTYISKVSIATPK 80

Query: 88  KL--LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAA 131
           +       F      + + L+A   +DL +W  AL  A    PS+ 
Sbjct: 81  QKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQASKSGPSSG 126

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens} Length = 134

 Score = 69.7 bits (170), Expect = 2e-14
 Identities = 24/134 (17%), Positives = 45/134 (33%), Gaps = 29/134 (21%)

Query: 16  SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDL 75
           +++V + G L I     G+ +W +RW +L+   + ++            +    +G I+L
Sbjct: 2   NSSVEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTY------PDDEKRKNPIGRINL 55

Query: 76  NNSGSVVV-----------------------REDKKLLTVLFPDGRDGRAFTLKAETSED 112
            N  S  +                        +D++ L     D        L A+T E+
Sbjct: 56  ANCTSRQIEPANREFCARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEE 115

Query: 113 LYEWKTALELALAQ 126
              W   L   L  
Sbjct: 116 RDLWMQKLNQVLVD 129

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 115

 Score = 69.0 bits (169), Expect = 2e-14
 Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 15/117 (12%)

Query: 15  ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGID 74
            S+   KSG L   S   G + ++KRW      S+ ++ N+               G I 
Sbjct: 4   GSSGKVKSGWLDKLS-PQGKRMFQKRWVKFDGLSISYYNNEKEMYS---------KGIIP 53

Query: 75  LNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAA 131
           L+   S V  +      V+       R F  + E  E+  +W + L  AL      +
Sbjct: 54  LSAI-STVRVQGDNKFEVVTTQ----RTFVFRVEKEEERNDWISILLNALKSQSLTS 105

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 113

 Score = 68.9 bits (169), Expect = 2e-14
 Identities = 22/120 (18%), Positives = 36/120 (30%), Gaps = 12/120 (10%)

Query: 19  VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNS 78
             + G L    KG  + +WK  W +L    + F+K      P          G I L  S
Sbjct: 5   RIREGYLV--KKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSP---------KGMIPLKGS 53

Query: 79  GSVVVREDKKLLTVLF-PDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGHN 137
                 +D      +F       +    +A   E+   W   +  A+           H+
Sbjct: 54  TLTSPCQDFGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAIKCIEGLEHHHHHH 113

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 68.6 bits (168), Expect = 3e-14
 Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 11/110 (10%)

Query: 15  ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGID 74
            S+ V K G +    KG   K+W +RWF+L    + ++ ++               G I 
Sbjct: 4   GSSGVLKQGYMM--KKGHRRKNWTERWFVLKPNIISYYVSEDLKDK---------KGDIL 52

Query: 75  LNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124
           L+ +  V    DK     LF      + F + A   +   EW  A+   +
Sbjct: 53  LDENCCVESLPDKDGKKCLFLVKCFDKTFEISASDKKKKQEWIQAIHSTI 102

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B Length = 112

 Score = 67.9 bits (166), Expect = 5e-14
 Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 19/115 (16%)

Query: 21  KSGPLFI--SSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNS 78
           K G L     +  +G + WK  + +L+   L  + +    +P            +++   
Sbjct: 2   KEGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIPL---------LSVNMGGE 52

Query: 79  GSVVVREDKK-----LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAP 128
                R            V+     D     L AE+  ++ EW   L  A+++  
Sbjct: 53  QCGGCRRANTTDRPHAFQVILS---DRPCLELSAESEAEMAEWMQHLCQAVSKGV 104

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1 Length = 117

 Score = 67.5 bits (165), Expect = 8e-14
 Identities = 27/129 (20%), Positives = 44/129 (34%), Gaps = 27/129 (20%)

Query: 15  ASNTVFKSGPLFISSKGIGWKSWKKRWFIL--TRTSLVFFKNDPSALPQRGGEVNLTLGG 72
            S+     G L+   KG   K WK RWF+L  T+  L ++ +                G 
Sbjct: 4   GSSGRSYEGILY--KKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTEC---------KGV 52

Query: 73  IDLNNSGSVVV----------REDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALEL 122
           IDL    +V             ++K    V        R +   A+      +W   ++ 
Sbjct: 53  IDLAEVEAVAPGTPTIGAPKTVDEKAFFDVKTTR----RVYNFCAQDVPSAQQWVDRIQS 108

Query: 123 ALAQAPSAA 131
            L+  PS+ 
Sbjct: 109 CLSSGPSSG 117

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 73.7 bits (180), Expect = 1e-13
 Identities = 81/582 (13%), Positives = 167/582 (28%), Gaps = 183/582 (31%)

Query: 181 PSFLEKALRFLEKFGTK-VEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVK 239
             F +    F++ F  K V+ + +     EE+D  +           A      +     
Sbjct: 23  SVFEDA---FVDNFDCKDVQDMPKSILSKEEIDHIIMSK-------DAVSGTLRLFWT-- 70

Query: 240 HVLRELPSSPVPASCCTALLEAY-----KIDRKEARISAMRSAILETFPEPNRRLLQRIL 294
             L       V       L   Y      I + E R  +M + +     +      Q   
Sbjct: 71  --LLSKQEEMVQKFVEEVLRINYKFLMSPI-KTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 295 RMMHTISSHAHENRMTPSAVAACMAPLL-LRP----LLAGECELEDDFDMNGDNSAQLLA 349
           +         + +R            LL LRP    L+ G         + G     +  
Sbjct: 128 KY--------NVSR--LQPYLKLRQALLELRPAKNVLIDG---------VLGSGKTWV-- 166

Query: 350 AANAANNAQAIIATLLEEYENIFDDE----SLHRCSISADSHVDNSGSEDSSDEENLDMK 405
           A +   +          + +   D +    +L  C+               S E  L+M 
Sbjct: 167 ALDVCLS---------YKVQCKMDFKIFWLNLKNCN---------------SPETVLEML 202

Query: 406 NNGYHDAQNEVDPESD---DDPERAHSGK-----LSESSGYAGS-----DLYDYKALGGD 452
               +         SD   +   R HS +     L +S  Y        ++ + KA   +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW--N 260

Query: 453 DSDVGSP-----RNNN-----ASAESSKLPIDPIQIGDPGDQVVEQQGKQKKGNENSITE 502
             ++        R        ++A ++ + +D   +    D+V     K          +
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK--------YLD 312

Query: 503 MEVSSVLPAGESYHSMGEILSSVDPGHPLSVSGLESSAEKPVGKGTSSNFSAKRSAFWGR 562
                 LP         E+L+     +P  +S +  +     G  T  N+  K       
Sbjct: 313 CRPQD-LPR--------EVLT----TNPRRLSII--AESIRDGLATWDNW--KHVNCDKL 355

Query: 563 SNARKTSSVESIDSSGE----EELAI---------QRLEI-----TKNDLRHRIAKEARG 604
           +   + SS+  ++ +      + L++           L +      K+D+   +  +   
Sbjct: 356 TTIIE-SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM-VVVNKLHK 413

Query: 605 NAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDL-RAALEVGLSMSSGQFSSSRG 663
            ++++   +    ++    L        L+ +L+ E  L R+ ++         ++  + 
Sbjct: 414 YSLVEKQPKESTISIPSIYL-------ELKVKLENEYALHRSIVD--------HYNIPKT 458

Query: 664 MD----SKVCTD---------H-------KRFVSF--LFLDL 683
            D         D         H       +R   F  +FLD 
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.3 bits (153), Expect = 2e-10
 Identities = 68/513 (13%), Positives = 138/513 (26%), Gaps = 135/513 (26%)

Query: 30  KGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVN-LTLGGIDLNNSGSVVVREDKK 88
            G G K+W      +                +   ++  L L      NS   V+   +K
Sbjct: 159 LGSG-KTW------VALDVC----LSYKVQCKMDFKIFWLNLKNC---NSPETVLEMLQK 204

Query: 89  LLTVLFPDG--RDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGHNGIFRNDTND 146
           LL  + P+   R   +  +K      +      L L      +  LV+        +  +
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRI-HSIQAELRRL-LKSKPYENCLLVL-------LNVQN 255

Query: 147 --TIEGSF-HQ------WRDKRPVKSLVVGRPILLALEDIDGGPSFLE-KALRFLEKF-G 195
                 +F          R K+    L       ++L+           +    L K+  
Sbjct: 256 AKAWN-AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT--LTPDEVKSLLLKYLD 312

Query: 196 TKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAH-----VIGDCVKHVLRELPSSPV 250
            + + + R+                           +     +I +     +R+      
Sbjct: 313 CRPQDLPREVLTT-----------------------NPRRLSIIAE----SIRDGL---- 341

Query: 251 PASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQR--ILRMMHTISSHAHENR 308
                 A  + +K    +   + + S++    P   R++  R  +             + 
Sbjct: 342 ------ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP----------PSA 385

Query: 309 MTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEY 368
             P+ +      L    L+  +    D   +        L       +  +I +  LE  
Sbjct: 386 HIPTIL------L---SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436

Query: 369 ENIFDDESLHRCSISADSHVDNSGSEDSSDEENLDM---KNNGYHDAQNEVDPESDDDPE 425
             + ++ +LHR  +   +      S+D      LD     + G+H    E          
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIP-PYLDQYFYSHIGHHLKNIEHPERMTLFRM 495

Query: 426 ------------RAHSGKLSESSGYAGSDLYD---YKALGGDDSD-----VGSPRNNNAS 465
                       R H      +SG   + L     YK    D+       V +  +    
Sbjct: 496 VFLDFRFLEQKIR-HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554

Query: 466 AESSKLPIDP----IQIG--DPGDQVVEQQGKQ 492
            E   L        ++I      + + E+  KQ
Sbjct: 555 IE-ENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus} Length = 228

 Score = 69.3 bits (169), Expect = 2e-13
 Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 17/120 (14%)

Query: 14  GASNTVFKSGPLF---ISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTL 70
            +     K G L      S  +  ++WKKRWF+L ++ L++F+ND               
Sbjct: 53  RSKQEALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEEKL---------K 103

Query: 71  GGIDLNNSGSVVVREDKK-LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129
           G +++ ++  ++   +K+  + ++  D    R F L AE+ ED  +W + L    +    
Sbjct: 104 GTVEVRSAKEIIDNTNKENGIDIIMAD----RTFHLIAESPEDASQWFSVLSQVHSSTDQ 159

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens} Length = 164

 Score = 67.8 bits (165), Expect = 2e-13
 Identities = 20/136 (14%), Positives = 47/136 (34%), Gaps = 17/136 (12%)

Query: 16  SNTVFKSGPLF---ISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGG 72
           +        L       K     ++K+R F+LT++ L +++       ++        G 
Sbjct: 12  NFNTILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEKKYRK--------GF 63

Query: 73  IDLNNSGSV-VVREDKKLLTV----LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127
           ID++    V +V+ D  ++       F    D     + A + +    W   L+  +   
Sbjct: 64  IDVSKIKCVEIVKNDDGVIPCQNKYPFQVVHDANTLYIFAPSPQSRDLWVKKLKEEIKNN 123

Query: 128 PSAALVMGHNGIFRND 143
            +  +   H   + + 
Sbjct: 124 NNIMIKY-HPKFWTDG 138

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1 Length = 108

 Score = 65.5 bits (160), Expect = 3e-13
 Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 20/115 (17%)

Query: 18  TVFKSGPLF--ISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDL 75
           +V K G L             W+KRW +++R    ++ N+ S  P          G   +
Sbjct: 2   SVIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQP---------KGTFLI 52

Query: 76  NNSGSVVVREDKK------LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124
                 +    ++         +   D R    +   A +  +  +W   +   L
Sbjct: 53  KGYSVRMAPHLRRDSKKESCFELTSQDRRT---YEFTATSPAEARDWVDQISFLL 104

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 65.6 bits (160), Expect = 3e-13
 Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 15/118 (12%)

Query: 14  GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGI 73
            +     K G L   S GI  K W++R   +    L       +  P            +
Sbjct: 5   SSGYGSEKKGYLLKKSDGIR-KVWQRRKCSVKNGILTISHATSNRQP----------AKL 53

Query: 74  DLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAA 131
           +L         EDKK   ++  +    R +  +AE  +D   W + L  +  +A + A
Sbjct: 54  NLLTCQVKPNAEDKKSFDLISHN----RTYHFQAEDEQDYVAWISVLTNSKEEALTMA 107

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 109

 Score = 64.7 bits (158), Expect = 6e-13
 Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 15/118 (12%)

Query: 15  ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGID 74
            S+    SG  ++       K WK  WF++    L  +                 L    
Sbjct: 4   GSSGSTMSG--YLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDVAA---------LESQP 52

Query: 75  LNNSGSVVVREDKKLLTV--LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSA 130
           L      +V+++     V  L   G     +  KA+ +     W  A +      PS+
Sbjct: 53  LLGFTVTLVKDENSESKVFQLLHKGM--VFYVFKADDAHSTQRWIDAFQEGTVSGPSS 108

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens} Length = 128

 Score = 65.2 bits (159), Expect = 6e-13
 Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 22/126 (17%)

Query: 12  RPGASNTVFKSGPLFISSK--GIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLT 69
           +   +  V + G L+   K    G K WKKRWF+L+   L +++++              
Sbjct: 14  KRNPNAPVVRRGWLY---KQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGI--------- 61

Query: 70  LGGIDLNNSGSVVVREDKKL-----LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124
           LG I L +    ++  +  +          P   + R +    +T +++  W  A+  A 
Sbjct: 62  LGSILLPSFQIALLTSEDHINRKYAFKAAHP---NMRTYYFCTDTGKEMELWMKAMLDAA 118

Query: 125 AQAPSA 130
               S 
Sbjct: 119 LVQTSG 124

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 117

 Score = 64.4 bits (157), Expect = 9e-13
 Identities = 30/127 (23%), Positives = 45/127 (35%), Gaps = 24/127 (18%)

Query: 13  PGASNTVFKSGPLFISSK--GIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTL 70
              +  V K+G LF   K    G K W KRWF+L    L ++K++              L
Sbjct: 5   SSGNAPVTKAGWLF---KQASSGVKQWNKRWFVLVDRCLFYYKDEKEESI---------L 52

Query: 71  GGIDLNNSGSVVVREDKK-----LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA-- 123
           G I L +     V+                     R +   AE+ E+   W  A+  A  
Sbjct: 53  GSIPLLSFRVAAVQPSDNISRKHTFKAEHA---GVRTYFFSAESPEEQEAWIQAMGEAAR 109

Query: 124 LAQAPSA 130
           +   PS+
Sbjct: 110 VQSGPSS 116

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A* Length = 129

 Score = 64.5 bits (157), Expect = 1e-12
 Identities = 31/126 (24%), Positives = 48/126 (38%), Gaps = 6/126 (4%)

Query: 9   ERPRPGASNTVFKSGPLFISSKGIGWK----SWKKRWFILTRTSLVFFKNDPSALPQRGG 64
            R     S+ V KSG L ++    G +    +W   W +LT  SLVF++  P   P  G 
Sbjct: 2   SRRASVGSHEVEKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGW 61

Query: 65  EVNLT--LGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALEL 122
               +     +DL  +     R       VL      G  F L+++   +L  W  AL  
Sbjct: 62  GPAGSRPESSVDLRGAALAHGRHLSSRRNVLHIRTIPGHEFLLQSDHETELRAWHRALRT 121

Query: 123 ALAQAP 128
            + +  
Sbjct: 122 VIERLV 127

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 150

 Score = 65.0 bits (158), Expect = 1e-12
 Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 22/132 (16%)

Query: 12  RPGASNTVFKSGPLF----ISSKGIGWKSWKKRWFILTRTS-----LVFFKNDPSALPQR 62
                  + K G L+     S+  +  +S+K+R+F L +       L F+K++  +    
Sbjct: 11  LGSQKGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKIS---- 66

Query: 63  GGEVNLTLGGIDLNNSGSVVVREDKK--LLTVLFPDGRDGRAFTLKAETSEDLYEWKTAL 120
                   G I L++   VV     +     +   D      + L A++  ++ EW T L
Sbjct: 67  ----KEPKGSIFLDSCMGVVQNNKVRRFAFELKMQDKSS---YLLAADSEVEMEEWITIL 119

Query: 121 ELALAQAPSAAL 132
              L     AA+
Sbjct: 120 NKILQLNFEAAM 131

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 129

 Score = 63.8 bits (155), Expect = 2e-12
 Identities = 35/136 (25%), Positives = 53/136 (38%), Gaps = 19/136 (13%)

Query: 3   ASLAPFERPRPGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQR 62
           +S +         S TV K G L    +G   K+WK R F+L +        DPS     
Sbjct: 2   SSGSSGSLSTVELSGTVVKQGYLA--KQGHKRKNWKVRRFVLRKDPAFLHYYDPSK---- 55

Query: 63  GGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGR---------DGRAFTLKAETSEDL 113
             E N  +GG  L  S  V   ED  + T +  + +         D   + ++A +  + 
Sbjct: 56  --EENRPVGGFSLRGS-LVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAER 112

Query: 114 YEWKTALELALAQAPS 129
            EW  A++  L   PS
Sbjct: 113 AEWIEAIK-KLTSGPS 127

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A Length = 103

 Score = 62.5 bits (152), Expect = 3e-12
 Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 10/98 (10%)

Query: 30  KGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKL 89
                  W+ RWF+L    L ++ +         G + + +  I        V   D   
Sbjct: 8   WTNYLTGWQPRWFVLDNGILSYYDSQDDVCKGSKGSIKMAVCEI-------KVHSADNTR 60

Query: 90  LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127
           + ++ P     + F +KA  + +   W  AL  + A  
Sbjct: 61  MELIIP---GEQHFYMKAVNAAERQRWLVALGSSKASL 95

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A Length = 109

 Score = 62.8 bits (153), Expect = 3e-12
 Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 18/116 (15%)

Query: 15  ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTS--LVFFKNDPSALPQRGGEVNLTLGG 72
            +  + K G L    +G   K+WK R FIL      L ++    +  P         LG 
Sbjct: 3   FTGVIIKQGCLL--KQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDP---------LGA 51

Query: 73  IDLNNSGSVVVREDKKLLTVLFPDG-----RDGRAFTLKAETSEDLYEWKTALELA 123
           I L       V  +         +       D   + L+A T ++  EW  A+++A
Sbjct: 52  IHLRGCVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA 107

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 107

 Score = 62.6 bits (152), Expect = 3e-12
 Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 13/115 (11%)

Query: 15  ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGID 74
            S+ +  S  L +         WK RW  +    L F+++             +    + 
Sbjct: 4   GSSGLETSSYLNVLVN----SQWKSRWCSVRDNHLHFYQDR--------NRSKVAQQPLS 51

Query: 75  LNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129
           L     VV       L       +      L+A++SE++  W   L       PS
Sbjct: 52  LVGC-EVVPDPSPDHLYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSESGSGPS 105

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A* Length = 123

 Score = 62.5 bits (152), Expect = 4e-12
 Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 11/96 (11%)

Query: 30  KGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNS--GSVVVREDK 87
              G + WK+RWF+L+   L ++K+               LG + L +           +
Sbjct: 21  DSSGLRLWKRRWFVLSGHCLFYYKDSREESV---------LGSVLLPSYNIRPDGPGAPR 71

Query: 88  KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123
                   +    R + L A+T EDL  W  AL  A
Sbjct: 72  GRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRA 107

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 137

 Score = 62.7 bits (152), Expect = 5e-12
 Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 4/105 (3%)

Query: 26  FISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE 85
               + +  K +++ W +   T+L ++K+   A      ++NL    +  +    V V  
Sbjct: 17  IFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEAPGDPIQQLNLKGCEVVPD----VNVSG 72

Query: 86  DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSA 130
            K  + +L P         L+ +  +    W     LA      A
Sbjct: 73  QKFCIKLLVPSPEGMSEIYLRCQDEQQYARWMAGCRLASKGRTMA 117

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 122

 Score = 62.1 bits (151), Expect = 6e-12
 Identities = 28/120 (23%), Positives = 42/120 (35%), Gaps = 22/120 (18%)

Query: 11  PRPGASNTVFKSGPLFISSK--GIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNL 68
            +   +  V K+G LF   K    G K W KRWF+L    L ++K++             
Sbjct: 14  MKRNPNAPVTKAGWLF---KQASSGVKQWNKRWFVLVDRCLFYYKDEKEESI-------- 62

Query: 69  TLGGIDLNNSGSVVVREDKK-----LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123
            LG I L +     V+                     R +   AE+ E+   W  A+  A
Sbjct: 63  -LGSIPLLSFRVAAVQPSDNISRKHTFKAEHA---GVRTYFFSAESPEEQEAWIQAMGEA 118

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 149

 Score = 62.4 bits (151), Expect = 1e-11
 Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 11/103 (10%)

Query: 18  TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNN 77
            ++  G L I  K  G++ ++  W  L  T+L F+ +  S +          +  +D+ +
Sbjct: 17  PLYFEGFLLI--KRSGYREYEHYWTELRGTTLFFYTDKKSIIY---------VDKLDIVD 65

Query: 78  SGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTAL 120
              +  +   +     F          LK E +E   EW+  +
Sbjct: 66  LTCLTEQNSTEKNCAKFTLVLPKEEVQLKTENTESGEEWRGFI 108

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A Length = 125

 Score = 61.5 bits (149), Expect = 1e-11
 Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 8/111 (7%)

Query: 18  TVFKSGPLFISSKGIGWKSWKKRWFILTR-TSLVFFKNDPSALPQRGGEVNLTLGGIDLN 76
            + K G L    +G   K+W+ R+F+L    + + +K  P  + QR       L    + 
Sbjct: 7   AIVKEGWLH--KRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAP----LNNFSVA 60

Query: 77  NSGSVVVREDKK-LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126
               +     +     +           T   ET E+  EW TA++     
Sbjct: 61  QCQLMKTERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADG 111

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 61.1 bits (148), Expect = 1e-11
 Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 14/118 (11%)

Query: 15  ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTS--LVFFKNDPSALPQRGGEVNLTLGG 72
            S+     G L           W+ R+F+L   +  L +F N+ S   +         G 
Sbjct: 4   GSSGENVYGYL--MKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKP-------RGT 54

Query: 73  IDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSA 130
           + L  +      ED    TV    G     + L+A  +++   W + L++       A
Sbjct: 55  LQLAGAVISPSDEDSHTFTVNAASGE---QYKLRATDAKERQHWVSRLQICTQHHTEA 109

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A* Length = 127

 Score = 61.2 bits (148), Expect = 1e-11
 Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 29/119 (24%)

Query: 30  KGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKK- 88
            G   K+WK+RWFILT   L +F+      P          G I L N     V + +K 
Sbjct: 14  LGGRVKTWKRRWFILTDNCLYYFEYTTDKEP---------RGIIPLENLSIREVLDPRKP 64

Query: 89  -LLTVLFPDGRDG------------------RAFTLKAETSEDLYEWKTALELALAQAP 128
               +  P  +                      + + A + E+  EW  +++ ++++ P
Sbjct: 65  NCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRDP 123

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens} Length = 94

 Score = 60.1 bits (146), Expect = 2e-11
 Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 13/105 (12%)

Query: 19  VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNS 78
           V + G L  S        W+ RW +L   +L ++K++               G I L+ +
Sbjct: 1   VERCGVL--SKWTNYIHGWQDRWVVLKNNALSYYKSEDETEYGC-------RGSICLSKA 51

Query: 79  GSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123
                  D+    +   D      + L+A+  +   +W  A+E  
Sbjct: 52  VITPHDFDECRFDISVND----SVWYLRAQDPDHRQQWIDAIEQH 92

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A Length = 129

 Score = 60.9 bits (148), Expect = 2e-11
 Identities = 28/130 (21%), Positives = 45/130 (34%), Gaps = 21/130 (16%)

Query: 12  RPGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTS--LVFFKNDPSALPQRGGEVNLT 69
           +      + K G L    +G   K+WK R FIL      L ++    +  P         
Sbjct: 11  KEEFRGVIIKQGCLL--KQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDP--------- 59

Query: 70  LGGIDLNNSGSVVVREDKKLLTVLFPDG-----RDGRAFTLKAETSEDLYEWKTALELA- 123
           LG I L       V  +         +       D   + L+A T ++  EW  A+++A 
Sbjct: 60  LGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMAS 119

Query: 124 --LAQAPSAA 131
                 PS+ 
Sbjct: 120 RTGKSGPSSG 129

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 123

 Score = 60.0 bits (145), Expect = 4e-11
 Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 21/131 (16%)

Query: 13  PGASNTVFKSGPLF------ISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEV 66
              S+     G L          K    +SW+  + +L R SL F+K+  +A        
Sbjct: 2   SSGSSGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHG 61

Query: 67  NLTLGGIDLNNSGSVVVREDKK------LLTVLFPDGRDGRAFTLKAETSEDLYEWKTAL 120
            + +    L  +   V  + +K      L        +DG+ +  +A+   ++  W   +
Sbjct: 62  EVPV---SLARAQGSVAFDYRKRKHVFKLGL------QDGKEYLFQAKDEAEMSSWLRVV 112

Query: 121 ELALAQAPSAA 131
             A+A  PS+ 
Sbjct: 113 NAAIASGPSSG 123

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 14/103 (13%)

Query: 21  KSGPLFISSKGIGWKSWKKRWFIL--TRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNS 78
             G L         + WK RWF     +  L + +    A P         L  IDL+++
Sbjct: 10  LCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDANP---------LDSIDLSSA 60

Query: 79  GSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALE 121
                 + ++ +  +    R     TLKA T + +  W   L+
Sbjct: 61  VFDCKADAEEGIFEIKTPSRV---ITLKAATKQAMLYWLQQLQ 100

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A Length = 148

 Score = 59.2 bits (143), Expect = 1e-10
 Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 20/121 (16%)

Query: 17  NTVFKSGPLF--ISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGID 74
             V K+G L             W+KRW  L++T   ++ +D     +         G   
Sbjct: 15  PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQK---------GEFA 65

Query: 75  LNNSGSVVVREDKK------LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAP 128
           ++     +    +K         +  P   D R +   A + +D  EW   L+  L    
Sbjct: 66  IDGYDVRMNNTLRKDGKKDCCFEICAP---DKRIYQFTAASPKDAEEWVQQLKFILQDLG 122

Query: 129 S 129
           S
Sbjct: 123 S 123

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens} Length = 124

 Score = 58.3 bits (141), Expect = 1e-10
 Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 21/129 (16%)

Query: 13  PGASNTVFKSGPL-----FISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALP---QRGG 64
              + T+ K+G L         K +  K W   W +L    L FFK+  ++     ++  
Sbjct: 2   AVRTKTLDKAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPS 61

Query: 65  EVNLTLGGIDLNNSGSVVVREDK-------KLLTVLFPDGRDGRAFTLKAETSEDLYEWK 117
           + +     ++L  +      +DK       +L +      RDG  + ++ ++   +  W 
Sbjct: 62  KFSTPEYTVELRGATLSWAPKDKSSRKNVLELRS------RDGSEYLIQHDSEAIISTWH 115

Query: 118 TALELALAQ 126
            A+   + +
Sbjct: 116 KAIAQGIQE 124

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 130

 Score = 58.2 bits (140), Expect = 2e-10
 Identities = 27/138 (19%), Positives = 43/138 (31%), Gaps = 34/138 (24%)

Query: 15  ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGID 74
            S+ +  +  L I       KSW K W +L    L+ +K   +            +G + 
Sbjct: 4   GSSGIVMADWLKIRGT---LKSWTKLWCVLKPGVLLIYKTQKNGQW---------VGTVL 51

Query: 75  LNNSGSVVVREDKK--LLTVLFPDGRDG--------------------RAFTLKAETSED 112
           LN    +     K      +  P  +                          ++A +  D
Sbjct: 52  LNACEIIERPSKKDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESD 111

Query: 113 LYEWKTALELALAQAPSA 130
              W  ALELAL   PS+
Sbjct: 112 GRCWMDALELALKSGPSS 129

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus} Length = 126

 Score = 56.6 bits (136), Expect = 6e-10
 Identities = 10/93 (10%), Positives = 29/93 (31%)

Query: 35  KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF 94
            SW + W +L+  +L+++         R    +     + +      +  + +       
Sbjct: 22  SSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSIVGWMVQLPDDPEHPDIFQL 81

Query: 95  PDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127
            +   G  +  +  +      W   L+ A   +
Sbjct: 82  NNPDKGNVYKFQTGSRFHAILWHKHLDDACKSS 114

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 126

 Score = 55.7 bits (134), Expect = 1e-09
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 4/113 (3%)

Query: 15  ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGID 74
            S+ +  SG L+   K + WK WKKR+F+L + S   F        +   +  L L G  
Sbjct: 4   GSSGMKHSGYLWAIGKNV-WKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYT 62

Query: 75  LNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127
           ++ +      E  +         ++G      ++  +D   W  A+  A  Q+
Sbjct: 63  VDYTDPQPGLEGGRAFFNAV---KEGDTVIFASDDEQDRILWVQAMYRATGQS 112

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A Length = 211

 Score = 57.1 bits (137), Expect = 2e-09
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 14/113 (12%)

Query: 17  NTVFKSGPLFISSKGIGW--KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGID 74
             V K+G L    K   +    W+KRW  L++T   ++ +D     +         G   
Sbjct: 104 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQK---------GEFA 154

Query: 75  LNNSGSVVV---REDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124
           ++     +    R+D K          D R +   A + +D  EW   L+  L
Sbjct: 155 IDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFIL 207

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A* Length = 169

 Score = 55.7 bits (133), Expect = 3e-09
 Identities = 23/153 (15%), Positives = 40/153 (26%), Gaps = 34/153 (22%)

Query: 18  TVFKSGPLFISSKG---IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGID 74
            V         S+        ++KK  F+LT   L +++ D        G      G ID
Sbjct: 2   AVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFER-----GRRGSKKGSID 56

Query: 75  LNNSGSVVVREDKK-------------------------LLTVLFPDGRDGRAFTLKAET 109
           +     V     +K                              F    D     + + T
Sbjct: 57  VEKITCVETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLYVFSPT 116

Query: 110 SEDLYEWKTALELALAQAPSAALVMGHNGIFRN 142
            E    W   L+  + +  S  +   H   + +
Sbjct: 117 EELRKRWIHQLKNVI-RYNSDLVQKYHPCFWID 148

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386

 Score = 58.2 bits (140), Expect = 4e-09
 Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 9/125 (7%)

Query: 6   APFERPRPGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGE 65
           A      P  S    K G +  +      + ++KRWF +    L++FK+   A  +    
Sbjct: 256 ASDADLVPKLSRNYLKEGYMEKTGPK-QTEGFRKRWFTMDDRRLMYFKDPLDAFARGEVF 314

Query: 66  VNLTLGGIDLNNSGSVVVREDKKL---LTVLFPDGRDGRAFTLKAETSEDLYEWKTALEL 122
           +     G  +   G     +       +T++ PD    R F    ET  D  EW  A + 
Sbjct: 315 IGSKESGYTV-LHGFPPSTQGHHWPHGITIVTPD----RKFLFACETESDQREWVAAFQK 369

Query: 123 ALAQA 127
           A+ + 
Sbjct: 370 AVDRP 374

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A* Length = 264

 Score = 56.0 bits (134), Expect = 1e-08
 Identities = 28/129 (21%), Positives = 46/129 (35%), Gaps = 24/129 (18%)

Query: 11  PRPGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTS-------LVFFKNDPSALPQRG 63
           P     + V K G L    K    KS  KR+F+L   S       L +++N+     +  
Sbjct: 2   PESDGFSDVRKVGYL---RKP---KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSS 55

Query: 64  GEVNLTLGGIDLNNSGSVVVREDKK---LLTVLFPDGRDGRAFTLKAETSEDLYEWKTAL 120
                    I L +  ++  R D K   L+ +   D      F + A++  +   W  AL
Sbjct: 56  AP----KRSIPLESCFNINKRADSKNKHLVALYTRD----EHFAIAADSEAEQDSWYQAL 107

Query: 121 ELALAQAPS 129
                +A  
Sbjct: 108 LQLHNRAKG 116

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1 Length = 122

 Score = 52.3 bits (125), Expect = 2e-08
 Identities = 21/120 (17%), Positives = 40/120 (33%), Gaps = 13/120 (10%)

Query: 13  PGASNTVFKSGPLF------ISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEV 66
            G        G +        ++K    +SW K +       + F+K+            
Sbjct: 2   SGTGAGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTF 61

Query: 67  NLTLGGIDLNNSGSVVVREDKK---LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123
                  DL N+   +  +  K   +L V   +G     F L+A    ++ +W T+L+  
Sbjct: 62  RGE-PSYDLQNAAIEIASDYTKKKHVLRVKLANGAL---FLLQAHDDTEMSQWVTSLKAQ 117

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A Length = 120

 Score = 50.8 bits (121), Expect = 5e-08
 Identities = 29/114 (25%), Positives = 41/114 (35%), Gaps = 10/114 (8%)

Query: 16  SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFK-NDPSALPQRGGEVNL---TLG 71
             T  KSG L   SK +  KS+ K +++LT   L  FK  D          + L   T+ 
Sbjct: 3   PFTEIKSGFLERRSKFL--KSYSKGYYVLTPNFLHEFKTADRKKDLVPVMSLALSECTVT 60

Query: 72  GIDLNNSGSVVVREDK----KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALE 121
                NS S            L        R G  +  KA++ E +  W   L+
Sbjct: 61  EHSRKNSTSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLK 114

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens} Length = 128

 Score = 51.0 bits (121), Expect = 5e-08
 Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 14/115 (12%)

Query: 21  KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQR--GGEVNLTLGGI----- 73
           K   L   S     K WKK++  L+    + +    +       G E++L    +     
Sbjct: 6   KQSFLLKRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVKVPGK 65

Query: 74  -------DLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALE 121
                      S S    + ++           G+ +  +A + E+   W  A+E
Sbjct: 66  RPPRAISAFGPSASGSAGQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAIE 120

>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A* Length = 173

 Score = 52.0 bits (124), Expect = 6e-08
 Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 4/98 (4%)

Query: 26  FISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE 85
               K +  K +K+ W     TS+  +K+   +      ++NL    +    +  V +  
Sbjct: 55  VFKPKKLTLKGYKQYWCTFKDTSISCYKSKEESSGTPAHQMNLRGCEV----TPDVNISG 110

Query: 86  DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123
            K  + +L P         L+ +  +    W  A  LA
Sbjct: 111 QKFNIKLLIPVAEGMNEIWLRCDNEKQYAHWMAACRLA 148

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 112

 Score = 50.4 bits (120), Expect = 7e-08
 Identities = 22/121 (18%), Positives = 41/121 (33%), Gaps = 16/121 (13%)

Query: 15  ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTS---LVFFKNDPSALPQRGGEVNLTLG 71
            S+     GPL +S  G   ++W + W  +  +    L                      
Sbjct: 4   GSSGSLLCGPLRLSESG---ETWSEVWAAIPMSDPQVLHLQGGSQDGRL---------PR 51

Query: 72  GIDLNN-SGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSA 130
            I L +   SV   E++     ++      +++ L A ++E   +W   L  A    PS+
Sbjct: 52  TIPLPSCKLSVPDPEERLDSGHVWKLQWAKQSWYLSASSAELQQQWLETLSTAAHSGPSS 111

Query: 131 A 131
            
Sbjct: 112 G 112

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus} Length = 279

 Score = 53.0 bits (126), Expect = 9e-08
 Identities = 29/124 (23%), Positives = 43/124 (34%), Gaps = 13/124 (10%)

Query: 15  ASNTVFKSGPLFI----------SSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGG 64
           A  TV K+G L +            +    + WK  W  L   +L F++ D  +      
Sbjct: 7   AQGTVRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDHNS 66

Query: 65  EVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124
                   + + NS    V E  K   V       G AF  +  +  +L  W TA+  A 
Sbjct: 67  VPKHA---VWVENSIVQAVPEHPKKDFVFCLSNSLGDAFLFQTTSQTELENWITAIHSAC 123

Query: 125 AQAP 128
           A A 
Sbjct: 124 AAAV 127

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A Length = 168

 Score = 50.9 bits (121), Expect = 1e-07
 Identities = 27/162 (16%), Positives = 49/162 (30%), Gaps = 20/162 (12%)

Query: 19  VFKSGPLFISS--------KGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTL 70
             K G L             G   + WK+ + +L   SL  +K+          E     
Sbjct: 3   AAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEE----- 57

Query: 71  GGIDLNNSGSVVVREDKK---LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127
             I +N     +   + K   +  +   D         +AE  +D+  W   ++ +    
Sbjct: 58  QPISVNACLIDISYSETKRKNVFRLTTSDCE----CLFQAEDRDDMLAWIKTIQESSNLN 113

Query: 128 PSAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRP 169
                V   + I R         S  +   K P +SL + + 
Sbjct: 114 EEDTGVTNRDLISRRIKEYNNLMSKAEQLPKTPRQSLSIRQT 155

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A Length = 263

 Score = 51.5 bits (122), Expect = 3e-07
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 13/123 (10%)

Query: 18  TVFKSGPLFI----------SSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVN 67
            V K+G LF             + +  + WK+ W  L   +L+F++       ++     
Sbjct: 10  VVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPR 69

Query: 68  LTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127
                +   +S    V E  K   V       G  +  +A +  DL  W TA+  A A  
Sbjct: 70  ---CALFAEDSIVQSVPEHPKKEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSACASL 126

Query: 128 PSA 130
            + 
Sbjct: 127 FAK 129

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A Length = 106

 Score = 44.9 bits (106), Expect = 5e-06
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 15/100 (15%)

Query: 30  KGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKK- 88
           K    +SW   + ++    + F+K+  SA              + L  +   V  + KK 
Sbjct: 16  KKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSE---VPVSLKEAICEVALDYKKK 72

Query: 89  -----LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123
                L         DG  +  +A+  E++  W  A+  A
Sbjct: 73  KHVFKLRL------SDGNEYLFQAKDDEEMNTWIQAISSA 106

>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 127

 Score = 44.7 bits (105), Expect = 8e-06
 Identities = 21/120 (17%), Positives = 34/120 (28%), Gaps = 18/120 (15%)

Query: 13  PGASN---TVFKSGPLFISSKGIGWKSWKKRWFILTRTS------LVFFKNDPSALPQRG 63
            G+S       K G L++  +    K W++    L   S      L   +          
Sbjct: 3   SGSSGMGDGAVKQGFLYLQQQQTFGKKWRRFGASLYGGSDCALARLELQEGPEKPRRCEA 62

Query: 64  GEVNLTLGGIDLNNSGSVV---VREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTAL 120
                    I L++   V            T  F      R + L A  +E   +W  A+
Sbjct: 63  AR-----KVIRLSDCLRVAEAGGEASSPRDTSAFFLETKERLYLLAAPAAE-RGDWVQAI 116

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A Length = 385

 Score = 47.3 bits (111), Expect = 1e-05
 Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 15/120 (12%)

Query: 11  PRPGASNTVFKSGPLFISSK-GIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLT 69
             P   N   K+G L   +K G+   +W ++++     +L+       A           
Sbjct: 270 KFPVNRNLTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQARGDVAGG--------- 320

Query: 70  LGGIDLNNSGSVVVREDKKLLT--VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127
              +D++N   + V  + +     +   DG+  ++  L+AE+ +D  EW   +     Q 
Sbjct: 321 -LAMDIDNCSVMAVDCEDRRYCFQITSFDGK--KSSILQAESKKDHEEWICTINNISKQI 377

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens} Length = 256

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 18/112 (16%)

Query: 22  SGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV 81
            G L +  K +G KSWKK +  L R+ L       SA P+    +       DL +S   
Sbjct: 135 QGFLHV--KELGKKSWKKLYVCLRRSGLYCSTKGTSAAPRHLQLL------ADLEDSNIF 186

Query: 82  VVREDKKLLT-------VLFPDGRDGRAFTLK---AETSEDLYEWKTALELA 123
            +   +K           + P+        L+   AE  +    W TA  L 
Sbjct: 187 SLIAGRKQYNAPTDHGLCIKPNKVRNETKELRLLCAEDEQTRTSWMTAFRLL 238

>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A Length = 124

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 5/110 (4%)

Query: 21  KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS 80
           + G L++       + W + +  +    L F  +    + +     +L  G +DLN    
Sbjct: 14  QQGELYMWDSID--QKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNTYNV 71

Query: 81  VVVREDKKLLTVLF---PDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127
           V   + K   + +F   P  +         +  E+L+EW  ++     + 
Sbjct: 72  VKAPQGKNQKSFVFILEPKQQGDPPVEFATDKVEELFEWFQSIREITWKI 121

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 10/111 (9%)

Query: 14  GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRT-SLVFFKNDPSALPQRGGEVNLTLGG 72
           G+   + K G L    +G   K+W+ R+F+L    + + +K  P  + QR   +N     
Sbjct: 1   GSDVAIVKEGWLH--KRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLN----N 54

Query: 73  IDLNNSGSVVVREDKKLLTVLFPDGRDGRAF--TLKAETSEDLYEWKTALE 121
             +     ++  E  +  T +    +       T   ET E+  EW TA++
Sbjct: 55  FSVAQC-QLMKTERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQ 104

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	689
d1f7ca_	191	a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxI	9e-31
d1tx4a_	196	a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapi	8e-30
d1xa6a1	196	a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal d	2e-29
d1pbwa_	184	a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Hu	8e-27
d1eaza_	103	b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId:	5e-15
d2i5fa1	104	b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapie	8e-14
d1u5da1	106	b.55.1.1 (A:108-213) Src kinase-associated phospho	1e-13
d1v5ma_	136	b.55.1.1 (A:) SH2 and PH domain-containing adapter	7e-13
d1droa_	122	b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila	1e-12
d1x1ga1	116	b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapie	2e-12
d1v5ua_	117	b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (M	2e-12
d1plsa_	113	b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [Ta	2e-12
d1fgya_	127	b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 1	2e-12
d1v89a_	118	b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KI	3e-12
d1btna_	106	b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus),	4e-12
d1faoa_	100	b.55.1.1 (A:) Dual adaptor of phosphotyrosine and	5e-12
d2dyna_	111	b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId	1e-11
d1u5fa1	111	b.55.1.1 (A:109-219) Src-associated adaptor protei	3e-11
d1v88a_	130	b.55.1.1 (A:) Oxysterol binding protein-related pr	5e-11
d1wi1a_	126	b.55.1.1 (A:) Calcium-dependent activator protein	2e-10
d1wjma_	123	b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens),	2e-10
d1upqa_	107	b.55.1.1 (A:) Phosphoinositol 3-phosphate binding	3e-10
d2elba2	101	b.55.1.1 (A:274-374) DCC-interacting protein 13-al	4e-10
d1wgqa_	109	b.55.1.1 (A:) FYVE, RhoGEF and PH domain containin	6e-10
d1v5pa_	126	b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId:	1e-09
d1wg7a_	150	b.55.1.1 (A:) Dedicator of cytokinesis protein 9,	1e-09
d1unqa_	118	b.55.1.1 (A:) Rac-alpha serine/threonine kinase {H	3e-09
d1qqga1	103	b.55.1.2 (A:12-114) Insulin receptor substrate 1,	3e-09
d1u5ea1	209	b.55.1.1 (A:14-222) Src-associated adaptor protein	3e-09
d2coda1	102	b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo	4e-09
d2coca1	99	b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain cont	4e-08
d2fjla1	101	b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phosph	8e-08
d2j59m1	133	b.55.1.1 (M:931-1063) Rho GTPase-activating protei	3e-07
d1btka_	169	b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Hom	9e-07
d1x1fa1	136	b.55.1.1 (A:8-143) Signal-transducing adaptor prot	2e-06
d1omwa2	119	b.55.1.1 (A:550-668) G-protein coupled receptor ki	3e-06
d2cofa1	95	b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens)	4e-06
d1w1ha_	147	b.55.1.1 (A:) 3-phosphoinositide dependent protein	2e-04
d2coaa1	112	b.55.1.1 (A:8-119) Protein kinase c, d2 type {Huma	0.001
d1v61a_	132	b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (M	0.001

>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]} Length = 191

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Graf
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score =  117 bits (293), Expect = 9e-31
 Identities = 45/203 (22%), Positives = 85/203 (41%), Gaps = 25/203 (12%)

Query: 178 DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT------EFSADEDA 231
             G S ++K +  +E  G   +G+ R       V + +      KT      E  A+ + 
Sbjct: 5   SIGFSIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEI 64

Query: 232 HVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQ 291
             I   +K  LR LP   +      + ++A K++ +E+R+S + S ++   PE NR++L 
Sbjct: 65  KTITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHS-LVHRLPEKNRQMLH 123

Query: 292 RILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAA 351
            ++  +  ++ +  +N MT + +     P LLRP                    + +AA 
Sbjct: 124 LLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRP------------------QEETVAAI 165

Query: 352 NAANNAQAIIATLLEEYENIFDD 374
                   +I  L+E +E IF+ 
Sbjct: 166 MDIKFQNIVIEILIENHEKIFNT 188

>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p50 RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (286), Expect = 8e-30
 Identities = 48/217 (22%), Positives = 83/217 (38%), Gaps = 25/217 (11%)

Query: 160 PVKSLVVGRPILLALEDIDGG---PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQ 216
           P+ +   G  +    E        P  L + + +L+      EGI R++A+ + V    Q
Sbjct: 1   PLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQ 60

Query: 217 EYEQGK-TEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMR 275
           +Y  G   +F      H+    +K  LRELP   +       ++    ID +  R+ A  
Sbjct: 61  KYNMGLPVDFDQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNID-ESQRVPATL 119

Query: 276 SAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELED 335
             +L+T PE N ++L+ +   +  IS+H+ +N+MT + +A    P LL            
Sbjct: 120 Q-VLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWA---------- 168

Query: 336 DFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372
                            A N        LL+    +F
Sbjct: 169 ---------KDAAITLKAINPINTFTKFLLDHQGELF 196

>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Beta-chimaerin, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (284), Expect = 2e-29
 Identities = 34/196 (17%), Positives = 75/196 (38%), Gaps = 22/196 (11%)

Query: 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADE----DAHVIGD 236
           P  ++  +R +E  G K EG+ R +   E ++     +++   +         D ++I  
Sbjct: 19  PMVVDICIREIEARGLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYPDINIITG 78

Query: 237 CVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRM 296
            +K   R+LP   +     +  ++A KI   + R+ A+   +L   P  +   L+ ++  
Sbjct: 79  ALKLYFRDLPIPVITYDTYSKFIDAAKISNADERLEAVH-EVLMLLPPAHYETLRYLMIH 137

Query: 297 MHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANN 356
           +  ++ +  +N M    +     P L+RP                      L   +    
Sbjct: 138 LKKVTMNEKDNFMNAENLGIVFGPTLMRP-----------------PEDSTLTTLHDMRY 180

Query: 357 AQAIIATLLEEYENIF 372
            + I+  L+E  + +F
Sbjct: 181 QKLIVQILIENEDVLF 196

>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 184

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p85 alpha subunit RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (263), Expect = 8e-27
 Identities = 32/151 (21%), Positives = 62/151 (41%), Gaps = 4/151 (2%)

Query: 178 DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFS-ADEDAHVIGD 236
           D  P  L K +  +EK G +   + R  +     + R Q  +           D HV+ D
Sbjct: 12  DIAPPLLIKLVEAIEKKGLECSTLYRTQSSSNLAELR-QLLDCDTPSVDLEMIDVHVLAD 70

Query: 237 CVKHVLRELPSSPVPASCCTALLEAY-KIDRKEARISAMRSAI-LETFPEPNRRLLQRIL 294
             K  L +LP+  +PA+  + ++    ++   E  I  ++  I   + P      LQ +L
Sbjct: 71  AFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLL 130

Query: 295 RMMHTISSHAHENRMTPSAVAACMAPLLLRP 325
           +    +S  + +N +    ++   +P+L R 
Sbjct: 131 KHFFKLSQTSSKNLLNARVLSEIFSPMLFRF 161

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (168), Expect = 5e-15
 Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 9/110 (8%)

Query: 17  NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLN 76
           + V K+G      +G   K+WK+R+F L   ++ +FK++    P     + L        
Sbjct: 1   SAVIKAGYCV--KQGAVMKNWKRRYFQLDENTIGYFKSELEKEPL--RVIPL-----KEV 51

Query: 77  NSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126
           +      + D  +   LF      R F ++A++ E+++ W  A+  A+  
Sbjct: 52  HKVQECKQSDIMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVA 101

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (159), Expect = 8e-14
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 4/105 (3%)

Query: 19  VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNS 78
           + K G L    +G   K+WK R FIL          DP+      G ++L    +   + 
Sbjct: 2   IIKQGCLLK--QGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVV--TSV 57

Query: 79  GSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123
            S       +   +      D   + L+A T ++  EW  A+++A
Sbjct: 58  ESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA 102

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (158), Expect = 1e-13
 Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 8/108 (7%)

Query: 19  VFKSGPLFISSKGIGW--KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLN 76
           V K G L   SK   +    W+KRW +++R    ++ N+ S  P+    +         +
Sbjct: 1   VIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIK------GYS 54

Query: 77  NSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124
              +  +R D K  +      +D R +   A +  +  +W   +   L
Sbjct: 55  VRMAPHLRRDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFLL 102

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]} Length = 136

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.1 bits (155), Expect = 7e-13
 Identities = 14/101 (13%), Positives = 32/101 (31%)

Query: 29  SKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKK 88
           S   G   W+K   +L R            +P +     +++    +    + +  E  +
Sbjct: 34  SGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRPKVSIPLSAIIEVRTTMPLEMPE 93

Query: 89  LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129
                     +G  + L+   S   + W   ++  +   PS
Sbjct: 94  KDNTFVLKVENGAEYILETIDSLQKHSWVADIQGCVDSGPS 134

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 63.0 bits (152), Expect = 1e-12
 Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 1/105 (0%)

Query: 19  VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNS 78
           V +      ++K    +SW K +       + F+K+                   DL N+
Sbjct: 14  VTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKS-NPELTFRGEPSYDLQNA 72

Query: 79  GSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123
              +  +  K   VL     +G  F L+A    ++ +W T+L+  
Sbjct: 73  AIEIASDYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQ 117

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (150), Expect = 2e-12
 Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 16/114 (14%)

Query: 16  SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDL 75
           S TV K G L    +G   K+WK R F+L +        DPS    R       +GG  L
Sbjct: 8   SGTVVKQGYLA--KQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENR------PVGGFSL 59

Query: 76  NNSGSVVVREDKKLLTVLFPDGR--------DGRAFTLKAETSEDLYEWKTALE 121
             S    + ++     V              D   + ++A +  +  EW  A++
Sbjct: 60  RGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIK 113

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 117

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.9 bits (149), Expect = 2e-12
 Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 3/116 (2%)

Query: 15  ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGID 74
            S+     G L+   KG   K WK RWF+L +T       D     +  G ++L      
Sbjct: 4   GSSGRSYEGILY--KKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVEAV 61

Query: 75  LNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSA 130
              + ++   +        F      R +   A+      +W   ++  L+  PS+
Sbjct: 62  APGTPTIGAPKTVDE-KAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSCLSSGPSS 116

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (149), Expect = 2e-12
 Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 12/110 (10%)

Query: 19  VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNS 78
             + G L    KG  + +WK  W +L    + F+K      P+         G I L  S
Sbjct: 5   RIREGYLVK--KGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPK---------GMIPLKGS 53

Query: 79  GSVVVRE-DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127
                 +   K + V        +    +A   E+   W   +  A+   
Sbjct: 54  TLTSPCQDFGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAIKCI 103

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.2 bits (150), Expect = 2e-12
 Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 31/128 (24%)

Query: 21  KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS 80
           + G L     G   K+WK+RWFILT   L +F+      P+         G I L N   
Sbjct: 7   REGWLL--KLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPR---------GIIPLENLSI 55

Query: 81  VVVREDKK--LLTVLFPDGR------------------DGRAFTLKAETSEDLYEWKTAL 120
             V + +K     +  P  +                  +   + + A + E+  EW  ++
Sbjct: 56  REVLDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSI 115

Query: 121 ELALAQAP 128
           + ++++ P
Sbjct: 116 KASISRDP 123

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (149), Expect = 3e-12
 Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 10/120 (8%)

Query: 15  ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGID 74
            S+   K G L    +    K+W++R+F+L    L ++K++    PQ      + L G  
Sbjct: 4   GSSGPIKMGWLKK--QRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQG----CMYLPGCT 57

Query: 75  LNNSGSVVVREDKKLLTVLFPDGR----DGRAFTLKAETSEDLYEWKTALELALAQAPSA 130
           +    +      K +  ++            ++ L A +  ++ EW   L       PS+
Sbjct: 58  IKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGSGPSS 117

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]} Length = 106

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

 Score = 61.2 bits (147), Expect = 4e-12
 Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 3/105 (2%)

Query: 19  VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNS 78
           + +       +K    +SW   + ++    + F+K+  S      G    +   + L  +
Sbjct: 5   LNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKS---AASGIPYHSEVPVSLKEA 61

Query: 79  GSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123
              V  + KK   V      DG  +  +A+  E++  W  A+  A
Sbjct: 62  ICEVALDYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA 106

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (146), Expect = 5e-12
 Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 12/106 (11%)

Query: 21  KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS 80
           K G L    +G   K+WK RWF L R  L +FK+  S  P            +DL    +
Sbjct: 6   KEGYLT--KQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPI---------RILDLTECSA 54

Query: 81  VVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126
           V     ++ +          R F L A+T  +  EW   L   L+Q
Sbjct: 55  VQFDYSQERVNCFCLVFPF-RTFYLCAKTGVEADEWIKILRWKLSQ 99

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (143), Expect = 1e-11
 Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 3/106 (2%)

Query: 19  VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNS 78
           V + G L I++ GI     K+ WF+LT  +L ++K+D     +    +++    +     
Sbjct: 3   VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKK--YMLSVDNLKLRDVEK 60

Query: 79  GSVVVREDKKLLTVLFPDGR-DGRAFTLKAETSEDLYEWKTALELA 123
           G +  +    L      +   D R   L  ET E++  WK +   A
Sbjct: 61  GFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRA 106

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.8 bits (141), Expect = 3e-11
 Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 14/113 (12%)

Query: 17  NTVFKSGPLFISSKG--IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGID 74
             V K+G L    K        W+KRW  L++T   ++ +D     +         G   
Sbjct: 7   PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQK---------GEFA 57

Query: 75  LNNSGSVVVRED---KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124
           ++     +        K          D R +   A + +D  EW   L+  L
Sbjct: 58  IDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFIL 110

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (141), Expect = 5e-11
 Identities = 28/131 (21%), Positives = 40/131 (30%), Gaps = 20/131 (15%)

Query: 15  ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGID 74
            S+ +  +  L         KSW K W +L    L+ +K   +      G V L    I 
Sbjct: 4   GSSGIVMADWLK---IRGTLKSWTKLWCVLKPGVLLIYKTQKNGQWV--GTVLLNACEII 58

Query: 75  LNNS---------------GSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTA 119
              S                   V+  K                 ++A +  D   W  A
Sbjct: 59  ERPSKKDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDA 118

Query: 120 LELALAQAPSA 130
           LELAL   PS+
Sbjct: 119 LELALKSGPSS 129

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (135), Expect = 2e-10
 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 4/113 (3%)

Query: 15  ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGID 74
            S+ +  SG L+   K + WK WKKR+F+L + S   F        +   +  L L G  
Sbjct: 4   GSSGMKHSGYLWAIGKNV-WKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYT 62

Query: 75  LNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127
           ++ +      E  +          +G      ++  +D   W  A+  A  Q+
Sbjct: 63  VDYTDPQPGLEGGRAFFNAVK---EGDTVIFASDDEQDRILWVQAMYRATGQS 112

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

 Score = 56.6 bits (135), Expect = 2e-10
 Identities = 22/112 (19%), Positives = 46/112 (41%), Gaps = 3/112 (2%)

Query: 19  VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNS 78
           + +   +    K    +SW+  + +L R SL F+K+  +A              + L  +
Sbjct: 14  LCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVP---YHGEVPVSLARA 70

Query: 79  GSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSA 130
              V  + +K   V     +DG+ +  +A+   ++  W   +  A+A  PS+
Sbjct: 71  QGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIASGPSS 122

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (133), Expect = 3e-10
 Identities = 25/110 (22%), Positives = 38/110 (34%), Gaps = 12/110 (10%)

Query: 16  SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDL 75
           +  V   G L       G + WK+RWF+L+   L ++K+                G + L
Sbjct: 6   NLPVHIRGWLHKQDSS-GLRLWKRRWFVLSGHCLFYYKDSREESVL---------GSVLL 55

Query: 76  NNSGSVVVREDK--KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123
            +                    +    R + L A+T EDL  W  AL  A
Sbjct: 56  PSYNIRPDGPGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRA 105

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 4e-10
 Identities = 17/106 (16%), Positives = 39/106 (36%), Gaps = 11/106 (10%)

Query: 17  NTVFKSGPLFI-SSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDL 75
           N   K+G L   +  G+   +W ++++     +L+       A              +D+
Sbjct: 3   NLTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQARGDVA----------GGLAMDI 52

Query: 76  NNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALE 121
           +N   + V  + +            ++  L+AE+ +D  EW   + 
Sbjct: 53  DNCSVMAVDCEDRRYCFQITSFDGKKSSILQAESKKDHEEWICTIN 98

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]} Length = 109

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.1 bits (131), Expect = 6e-10
 Identities = 19/115 (16%), Positives = 33/115 (28%), Gaps = 11/115 (9%)

Query: 15  ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGID 74
            S+    SG L+        K WK  WF++    L  +                      
Sbjct: 4   GSSGSTMSGYLYR--SKGSKKPWKHLWFVIKNKVLYTYAASEDVAALES---------QP 52

Query: 75  LNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129
           L      +V+++     V     +    +  KA+ +     W  A +      PS
Sbjct: 53  LLGFTVTLVKDENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGTVSGPS 107

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.6 bits (130), Expect = 1e-09
 Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 1/118 (0%)

Query: 13  PGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGG 72
           P         G L I         + +R+FIL   +        +      G   +    
Sbjct: 9   PYVDRQNRICGFLDIEDNE-NSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQ 67

Query: 73  IDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSA 130
           +   +  S+   + K      F      + + L+A   +DL +W  AL  A    PS+
Sbjct: 68  LTYISKVSIATPKQKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQASKSGPSS 125

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 1e-09
 Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 8/137 (5%)

Query: 11  PRPGASNTVFKSGPLF----ISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEV 66
                   + K G L+     S+  +  +S+K+R+F L +          +    +  ++
Sbjct: 10  SLGSQKGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLG----DGSYNLNFYKDEKI 65

Query: 67  NLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126
           +    G    +S   VV+ +K          +D  ++ L A++  ++ EW T L   L  
Sbjct: 66  SKEPKGSIFLDSCMGVVQNNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKILQL 125

Query: 127 APSAALVMGHNGIFRND 143
              AA+    NG    D
Sbjct: 126 NFEAAMQEKRNGDSHED 142

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 3e-09
 Identities = 18/112 (16%), Positives = 30/112 (26%), Gaps = 4/112 (3%)

Query: 16  SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDL 75
              + K G L    +G   K+W+ R+F+L          +      +             
Sbjct: 4   DVAIVKEGWLH--KRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQR--EAPLNNFSVA 59

Query: 76  NNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127
                   R       +           T   ET E+  EW TA++      
Sbjct: 60  QCQLMKTERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGL 111

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 3e-09
 Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 10/105 (9%)

Query: 19  VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPS---ALPQRGGEVNLTLGGIDL 75
           V K G L         KS  KR+F+L   S               +   + +     I L
Sbjct: 2   VRKVGYLRK------PKSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPL 55

Query: 76  NNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTAL 120
            +  ++  R D K   ++    RD   F + A++  +   W  AL
Sbjct: 56  ESCFNINKRADSKNKHLVALYTRD-EHFAIAADSEAEQDSWYQAL 99

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 209

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.3 bits (132), Expect = 3e-09
 Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 17  NTVFKSGPLFISSKGIGW--KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGID 74
             V K+G L    K   +    W+KRW  L++T   ++ +D     +  GE  +      
Sbjct: 102 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQK--GEFAID----G 155

Query: 75  LNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124
            +   +  +R+D K          D R +   A + +D  EW   L+  L
Sbjct: 156 YDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFIL 205

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 4e-09
 Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 15/110 (13%)

Query: 21  KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS 80
           KSG L   S   G + ++KRW      S+ ++ N+         +   + G I L+   S
Sbjct: 3   KSGWLDKLSPQ-GKRMFQKRWVKFDGLSISYYNNE---------KEMYSKGIIPLSAI-S 51

Query: 81  VVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSA 130
            V  +      V+         F  + E  E+  +W + L  AL      
Sbjct: 52  TVRVQGDNKFEVVTTQRT----FVFRVEKEEERNDWISILLNALKSQSLT 97

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 4e-08
 Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 14/105 (13%)

Query: 22  SGPLFISSKGIGWKSWKKRWFILTR---TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNS 78
            GPL +S  G   ++W + W  +       L            R             +  
Sbjct: 4   CGPLRLSESG---ETWSEVWAAIPMSDPQVLHLQGGSQDGRLPR--------TIPLPSCK 52

Query: 79  GSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123
            SV   E++     ++      +++ L A ++E   +W   L  A
Sbjct: 53  LSVPDPEERLDSGHVWKLQWAKQSWYLSASSAELQQQWLETLSTA 97

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 101

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.5 bits (114), Expect = 8e-08
 Identities = 14/107 (13%), Positives = 40/107 (37%), Gaps = 8/107 (7%)

Query: 21  KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS 80
           K+G L++  +      W   +F+LT + + + +   S      G +++         +  
Sbjct: 3   KNGILYL--EDPVNHEWYPHYFVLTSSKIYYSEETSS--DLLRGVLDVP----ACQIAIR 54

Query: 81  VVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127
              + ++  +  +        +  + A++ E+L +W   +      A
Sbjct: 55  PEGKNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVAQTA 101

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 3e-07
 Identities = 20/136 (14%), Positives = 42/136 (30%), Gaps = 16/136 (11%)

Query: 21  KSGPLFISS--------KGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGG 72
           K G L             G   + WK+ + +L   SL  +K+          E  +++  
Sbjct: 3   KEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNA 62

Query: 73  IDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAAL 132
                   + +   +     +F           +AE  +D+  W   ++ +         
Sbjct: 63  ------CLIDISYSETKRKNVFRLTTSDCECLFQAEDRDDMLAWIKTIQESSNLNEEDTG 116

Query: 133 VMGHNGIFR--NDTND 146
           V   + I R   + N+
Sbjct: 117 VTNRDLISRRIKEYNN 132

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 9e-07
 Identities = 16/153 (10%), Positives = 39/153 (25%), Gaps = 32/153 (20%)

Query: 18  TVFKSGPLFISSKG---IGWKSWKKRWFILTRTSLVFFKNDPSALPQR------------ 62
            V         S+        ++KK  F+LT   L +++ D     +             
Sbjct: 2   AVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKIT 61

Query: 63  ---------GGEVNLTLGGIDLNNSGSVVVREDKK---LLTVLFPDGRDGRAFTLKAETS 110
                           +      +S    +   ++      V++ +        + + T 
Sbjct: 62  CVETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDE----GPLYVFSPTE 117

Query: 111 EDLYEWKTALELALAQAPSAALVMGHNGIFRND 143
           E    W   L+  +       +   H   + + 
Sbjct: 118 ELRKRWIHQLKNVIRYNSD-LVQKYHPCFWIDG 149

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 136

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 2e-06
 Identities = 19/123 (15%), Positives = 43/123 (34%), Gaps = 11/123 (8%)

Query: 19  VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNS 78
           ++  G L I  K  G++ ++  W  L  T+L F+ +  S +             +D+ + 
Sbjct: 11  LYFEGFLLI--KRSGYREYEHYWTELRGTTLFFYTDKKSIIYVD---------KLDIVDL 59

Query: 79  GSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGHNG 138
             +  +   +     F          LK E +E   EW+  +      +    + +    
Sbjct: 60  TCLTEQNSTEKNCAKFTLVLPKEEVQLKTENTESGEEWRGFILTVTELSVPQNVSLLPGQ 119

Query: 139 IFR 141
           + +
Sbjct: 120 VIK 122

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]} Length = 119

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.6 bits (104), Expect = 3e-06
 Identities = 19/112 (16%), Positives = 32/112 (28%), Gaps = 13/112 (11%)

Query: 16  SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDL 75
                  G +           W++R+F L    L +     +                  
Sbjct: 7   GKDCIMHGYMSKMG-NPFLTQWQRRYFYLFPNRLEWRGEGEAPQSLLT------------ 53

Query: 76  NNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127
                 V     K    L    R G+ F L+ ++  +L +WK  L  A  +A
Sbjct: 54  MEEIQSVEETQIKERKCLLLKIRGGKQFVLQCDSDPELVQWKKELRDAYREA 105

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 4e-06
 Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 9/89 (10%)

Query: 35  KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF 94
             WK RW  +    L F+++            +             VV       L    
Sbjct: 13  SQWKSRWCSVRDNHLHFYQDR---------NRSKVAQQPLSLVGCEVVPDPSPDHLYSFR 63

Query: 95  PDGRDGRAFTLKAETSEDLYEWKTALELA 123
              +      L+A++SE++  W   L   
Sbjct: 64  ILHKGEELAKLEAKSSEEMGHWLGLLLSE 92

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 147

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: 3-phosphoinositide dependent protein kinase-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 17/111 (15%), Positives = 39/111 (35%), Gaps = 19/111 (17%)

Query: 17  NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLN 76
           N + K GP+            ++R  +LT    +++ +  + + +         G I  +
Sbjct: 46  NLILKMGPV----DKRKGLFARRRQLLLTEGPHLYYVDPVNKVLK---------GEIPWS 92

Query: 77  NSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127
                   ++ K   V  P+    R + L    S + ++W   ++    Q 
Sbjct: 93  QE-LRPEAKNFKTFFVHTPN----RTYYLMDP-SGNAHKWCRKIQEVWRQR 137

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]} Length = 112

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Protein kinase c, d2 type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 16/113 (14%), Positives = 37/113 (32%), Gaps = 13/113 (11%)

Query: 21  KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTL-GGIDLNNSG 79
           + G  ++          K+ ++ L    +  F+N+ +       E+ L+    ++   + 
Sbjct: 3   REG--WVVHYSNKDTLRKRHYWRLDCKCITLFQNNTTNRYY--KEIPLSEILTVESAQNF 58

Query: 80  SVVVREDKKLLTVLFPDGRD--------GRAFTLKAETSEDLYEWKTALELAL 124
           S+V          +              G       + +E    W+TA+  AL
Sbjct: 59  SLVPPGTNPHCFEIVTANATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQAL 111

>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]} Length = 132

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac/CDC42 GEF 6, alpha-pix
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 19/131 (14%), Positives = 39/131 (29%), Gaps = 8/131 (6%)

Query: 1   MSASLAPFERPRPGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALP 60
           +S  +  +E         V     + +   G   +  + R+F+L  + L+     P    
Sbjct: 10  LSEPIQAWEGDDIKTLGNVIFMSQVVMQH-GACEEKEE-RYFLLFSSVLIMLSASP---- 63

Query: 61  QRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTAL 120
                  +  G I +       + E +    +    G       +    ++D  EW   L
Sbjct: 64  --RMSGFMYQGKIPIAGMVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQL 121

Query: 121 ELALAQAPSAA 131
                  PS+ 
Sbjct: 122 NRLTKSGPSSG 132

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	689
d1xa6a1	196	Beta-chimaerin, C-terminal domain {Human (Homo sap	100.0
d1tx4a_	196	p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 96	100.0
d1f7ca_	191	Graf {Chicken (Gallus gallus) [TaxId: 9031]}	100.0
d1pbwa_	184	p85 alpha subunit RhoGAP domain {Human (Homo sapie	100.0
d1v88a_	130	Oxysterol binding protein-related protein 8 (ORP-8	99.58
d1u5ea1	209	Src-associated adaptor protein Skap2 {Mouse (Mus m	99.57
d1v89a_	118	Rho-GTPase-activating protein 25 (KIAA0053) {Human	99.57
d1x1fa1	136	Signal-transducing adaptor protein 1, STAP-1 {Huma	99.57
d2dyna_	111	Dynamin {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1faoa_	100	Dual adaptor of phosphotyrosine and 3-phosphoinosi	99.56
d1v5pa_	126	Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}	99.56
d1wg7a_	150	Dedicator of cytokinesis protein 9, DOCK9 {Human (	99.55
d2fjla1	101	Phosphoinositide phospholipase C, PLC-gamma-1 {Rat	99.54
d1v5ma_	136	SH2 and PH domain-containing adapter protein APS {	99.53
d1v5ua_	117	SET binding factor 1, Sbf1 {Mouse (Mus musculus) [	99.52
d1wgqa_	109	FYVE, RhoGEF and PH domain containing protein 6, F	99.51
d2coaa1	112	Protein kinase c, d2 type {Human (Homo sapiens) [T	99.51
d1unqa_	118	Rac-alpha serine/threonine kinase {Human (Homo sap	99.5
d1wi1a_	126	Calcium-dependent activator protein for secretion,	99.49
d2j59m1	133	Rho GTPase-activating protein 21 {Human (Homo sapi	99.49
d1upqa_	107	Phosphoinositol 3-phosphate binding protein-1, PEP	99.49
d1u5da1	106	Src kinase-associated phosphoprotein SKAP55 (SCAP1	99.48
d1btka_	169	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.48
d2coda1	102	Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96	99.48
d1u5fa1	111	Src-associated adaptor protein Skap2 {Mouse (Mus m	99.48
d1fgya_	127	Grp1 {Mouse (Mus musculus) [TaxId: 10090]}	99.46
d1eaza_	103	Tapp1 {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1w1ha_	147	3-phosphoinositide dependent protein kinase-1 {Hum	99.45
d1plsa_	113	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1wjma_	123	beta-spectrin {Human (Homo sapiens), brain 2 isofo	99.45
d2elba2	101	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	99.43
d1omwa2	119	G-protein coupled receptor kinase 2 (beta-adrenerg	99.4
d2i5fa1	104	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	99.38
d1qqga1	103	Insulin receptor substrate 1, IRS-1 {Human (Homo s	99.36
d2coca1	99	FYVE, RhoGEF and PH domain containing protein 3, F	99.36
d1x1ga1	116	Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.35
d1droa_	122	beta-spectrin {Fruit fly (Drosophila melanogaster)	99.34
d1btna_	106	beta-spectrin {Mouse (Mus musculus), brain [TaxId:	99.28
d2cofa1	95	KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}	99.21
d1v61a_	132	Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [	98.66
d2dfka2	162	Rho guanine nucleotide exchange factor 9, Collybis	98.37
d1dbha2	133	Son of sevenless-1 (sos-1) {Human (Homo sapiens) [	97.92
d1ntya2	121	Triple functional domain protein TRIO {Human (Homo	97.85
d1zc3b1	109	Exocyst complex protein EXO84 {Rat (Rattus norvegi	97.63
d1maia_	119	Phospholipase C delta-1 {Rat (Rattus norvegicus) [	97.6
d1xcga2	140	Rho guanine nucleotide exchange factor 11, PDZ-Rho	97.57
d1txda2	114	Rho guanine nucleotide exchange factor 12 {Human (	97.29
d1ki1b2	142	GEF of intersectin {Human (Homo sapiens) [TaxId: 9	97.25
d1kz7a2	147	Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId	96.64
d1fhoa_	119	UNC-89 {Nematode (Caenorhabditis elegans) [TaxId:	94.91
d2adza1	105	Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 1	80.89

>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Beta-chimaerin, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-40  Score=287.30  Aligned_cols=191  Identities=17%  Similarity=0.308  Sum_probs=168.5

Q ss_pred             CCCCCCHHHHHHHC-CCCCHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCC-C---CCCCCCCCCCCHHHH
Q ss_conf             50255657774207-998589999999999509975791424999999999999963087-6---679988801204568
Q 005588          164 LVVGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-T---EFSADEDAHVIGDCV  238 (689)
Q Consensus       164 ~vFGvpL~~ll~~~-~~VP~iI~~~l~~L~~~Gl~~eGIFR~sg~~~~i~~L~~~ld~g~-~---~~~~~~Dvh~vA~lL  238 (689)
                      +|||+||+.++++. ..||.+|.+|+.+|+++|+.+|||||++|+...++++++.||++. .   .....+|+|++|++|
T Consensus         1 kiFg~~L~~~~~~~~~~iP~iv~~~i~~l~~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~~d~~~va~~l   80 (196)
T d1xa6a1           1 KVYCCDLTTLVKAHNTQRPMVVDICIREIEARGLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYPDINIITGAL   80 (196)
T ss_dssp             CCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHSCSSSTTTTTSCCCHHHHHHHHHHHSSTTTTSCCCSSSSCCTHHHHHHH
T ss_pred             CCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             96387789999766999993999999999981999888056179799999999997448976544433233015999999


Q ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf             88762099999995659999999811999999999999885369956799999999999996326577889922113330
Q 005588          239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM  318 (689)
Q Consensus       239 K~fLReLPePLlp~~ly~~ll~~~~~~~~~~ki~~i~~lil~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivf  318 (689)
                      |.|||+||+||+|.++|+.|+.+.+..+.+.++..++.++ .+||+.|+.+|.||+.||++|+.|++.|+|++.|||+||
T Consensus        81 K~fLr~Lp~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLA~~f  159 (196)
T d1xa6a1          81 KLYFRDLPIPVITYDTYSKFIDAAKISNADERLEAVHEVL-MLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENLGIVF  159 (196)
T ss_dssp             HHHHHHCSSCTTCSTTHHHHHTTTTCCCHHHHHHHHHHHH-TTSCHHHHHHHHHTTTTTHHHHTTTTTSCCCHHHHHHHH
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             9999749986577889999999973000568999999999-989999999999999999999886661246643536874


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             233257897898765443377899669999999997899999999997343237
Q 005588          319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF  372 (689)
Q Consensus       319 aP~Llrp~~~~~~~led~~~~~g~~~~ql~aa~~~~~~~~~iVe~LIen~~~IF  372 (689)
                      ||+|+|++..+....                 .........+|++||+||+.||
T Consensus       160 ~P~l~~~~~~~~~~~-----------------~~~~~~~~~iv~~LI~~~~~iF  196 (196)
T d1xa6a1         160 GPTLMRPPEDSTLTT-----------------LHDMRYQKLIVQILIENEDVLF  196 (196)
T ss_dssp             TTTSCCCCCSCTTGG-----------------GGTHHHHHHHHHHHHHTHHHHC
T ss_pred             CCCCCCCCCCCHHHH-----------------HHHHHHHHHHHHHHHHHHHHHC
T ss_conf             253046887337789-----------------9999999999999997058509

>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p50 RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-38  Score=279.18  Aligned_cols=192  Identities=25%  Similarity=0.382  Sum_probs=169.2

Q ss_pred             CCCCCCCCCCHHHHHHHC---CCCCHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCCH
Q ss_conf             888850255657774207---998589999999999509975791424999999999999963087-6679988801204
Q 005588          160 PVKSLVVGRPILLALEDI---DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIG  235 (689)
Q Consensus       160 ~~~~~vFGvpL~~ll~~~---~~VP~iI~~~l~~L~~~Gl~~eGIFR~sg~~~~i~~L~~~ld~g~-~~~~~~~Dvh~vA  235 (689)
                      |.++.+||+||+.++++.   ..||.+|.+|+.+|+++|+.+|||||++|+...++++++.++.|. ..+....++|+||
T Consensus         1 p~~~~~FG~~L~~l~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~va   80 (196)
T d1tx4a_           1 PLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHLPA   80 (196)
T ss_dssp             CCTTCCTTSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHHH
T ss_pred             CCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
T ss_conf             97988849788999961799999786999999999981999788244478699999999997279986645333188899


Q ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf             56888762099999995659999999811999999999999885369956799999999999996326577889922113
Q 005588          236 DCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA  315 (689)
Q Consensus       236 ~lLK~fLReLPePLlp~~ly~~ll~~~~~~~~~~ki~~i~~lil~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLA  315 (689)
                      ++||.|||+||+||+|...|+.|+.+....+ .+++..++.++ .+||+.|+.+|.+|+.||++|+.|++.|+|++.|||
T Consensus        81 ~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~-~~~~~~l~~~l-~~Lp~~~~~~L~~l~~~l~~i~~~~~~nkM~~~nLa  158 (196)
T d1tx4a_          81 VILKTFLRELPEPLLTFDLYPHVVGFLNIDE-SQRVPATLQVL-QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLA  158 (196)
T ss_dssp             HHHHHHHHHSSSCTTCGGGHHHHHTGGGSCG-GGHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHH
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCH-HHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             9999999708998442999999999981472-89999999999-987999999999999999999998987766798899


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             330233257897898765443377899669999999997899999999997343237
Q 005588          316 ACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF  372 (689)
Q Consensus       316 ivfaP~Llrp~~~~~~~led~~~~~g~~~~ql~aa~~~~~~~~~iVe~LIen~~~IF  372 (689)
                      +||||+|+|++..                   .........++.++++||+||+.||
T Consensus       159 ~~f~P~l~~~~~~-------------------~~~~~~~~~~~~~~~~LI~~~~~iF  196 (196)
T d1tx4a_         159 VVFGPNLLWAKDA-------------------AITLKAINPINTFTKFLLDHQGELF  196 (196)
T ss_dssp             HHHHHHHCCCSSH-------------------HHHHHTHHHHHHHHHHHHHTHHHHC
T ss_pred             HHHHHHHCCCCCC-------------------CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9970352678981-------------------0349999999999999997589629

>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Graf
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=4.1e-36  Score=261.98  Aligned_cols=179  Identities=24%  Similarity=0.380  Sum_probs=159.1

Q ss_pred             CCCHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCC------CCCCCCCCCCCHHHHHHHHHHCCCCCCCH
Q ss_conf             985899999999995099757914249999999999999630876------67998880120456888762099999995
Q 005588          179 GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT------EFSADEDAHVIGDCVKHVLRELPSSPVPA  252 (689)
Q Consensus       179 ~VP~iI~~~l~~L~~~Gl~~eGIFR~sg~~~~i~~L~~~ld~g~~------~~~~~~Dvh~vA~lLK~fLReLPePLlp~  252 (689)
                      .+|.+|.+|+.+|+.+|+.+|||||++|+..+++++++.++.|..      ....++|+|++|++||.|||+||+||+|.
T Consensus         6 ~~~~iv~~ci~~l~~~gl~~eGIFR~~G~~~~v~~l~~~~~~~~~~~~~~~~~~~~~dv~~va~~lK~~lreLp~pLi~~   85 (191)
T d1f7ca_           6 IGFSIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMY   85 (191)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTSCHHHHHHHHHHHHHTSSSCTTCH
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHH
T ss_conf             25089999999999809998881158897999999999985767544221000344679999999999998078986479


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC
Q ss_conf             65999999981199999999999988536995679999999999999632657788992211333023325789789876
Q 005588          253 SCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECE  332 (689)
Q Consensus       253 ~ly~~ll~~~~~~~~~~ki~~i~~lil~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfaP~Llrp~~~~~~~  332 (689)
                      ++|+.|+.+.+..+.+.++..++.++ .+||+.|+.+|++|+.||++|+.+++.|+|++.|||+||||+|+|++..+...
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~ll-~~LP~~~~~~L~~l~~~l~~v~~~~~~NkM~~~nLA~~f~P~l~~~~~~~~~~  164 (191)
T d1f7ca_          86 QFQRSFIKAAKLENQESRVSEIHSLV-HRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRPQEETVAA  164 (191)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHSCC---CCSG
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCHHCCCCCCCHHH
T ss_conf             99999999980157899999999999-97998999999999999999998411345718889999604524788752578


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             54433778996699999999978999999999973432378887
Q 005588          333 LEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES  376 (689)
Q Consensus       333 led~~~~~g~~~~ql~aa~~~~~~~~~iVe~LIen~~~IF~~~~  376 (689)
                      +.                  ....++.+|++||+||+.||++.+
T Consensus       165 ~~------------------~~~~~~~iv~~LI~~~~~iF~~~p  190 (191)
T d1f7ca_         165 IM------------------DIKFQNIVIEILIENHEKIFNTVP  190 (191)
T ss_dssp             GG------------------GHHHHHHHHHHHHHTHHHHHHSCC
T ss_pred             HH------------------HHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             99------------------899999999999998999779999

>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p85 alpha subunit RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-35  Score=253.46  Aligned_cols=170  Identities=21%  Similarity=0.317  Sum_probs=148.1

Q ss_pred             HCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHH
Q ss_conf             07998589999999999509975791424999999999999963087-66799888012045688876209999999565
Q 005588          176 DIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRELPSSPVPASC  254 (689)
Q Consensus       176 ~~~~VP~iI~~~l~~L~~~Gl~~eGIFR~sg~~~~i~~L~~~ld~g~-~~~~~~~Dvh~vA~lLK~fLReLPePLlp~~l  254 (689)
                      ..+.||.+|.+|+.+|+++|+.+|||||++|+. .+.++++.+++|. ......+|||++|++||.|||+||+||||.++
T Consensus        10 ~~~~vP~~l~~~i~~ie~~gl~~eGIFR~~g~~-~i~~l~~~~~~~~~~~~~~~~~~~~va~lLK~flreLp~plip~~~   88 (184)
T d1pbwa_          10 PPDIAPPLLIKLVEAIEKKGLECSTLYRTQSSS-NLAELRQLLDCDTPSVDLEMIDVHVLADAFKRYLLDLPNPVIPAAV   88 (184)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHTTCTTTTSSCCSC-CTTHHHHHSCSSSSCCCGGGBCHHHHHHHHHHHHHTSSSCSSCHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHH-HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf             999988799999999998289978821278647-9999999996699866743378888999999999738976464889


Q ss_pred             HHHHHHHH-HCCCHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC
Q ss_conf             99999998-11999999999999885-36995679999999999999632657788992211333023325789789876
Q 005588          255 CTALLEAY-KIDRKEARISAMRSAIL-ETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECE  332 (689)
Q Consensus       255 y~~ll~~~-~~~~~~~ki~~i~~lil-~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfaP~Llrp~~~~~~~  332 (689)
                      |+.|+.+. +..+.++++..++.++. ..||+.|+.+|.||+.||++|+.|++.|+|++.|||+||||+|||++...   
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LP~~n~~~L~~L~~~l~~v~~~~~~NkM~~~nLA~~f~P~l~~~~~~~---  165 (184)
T d1pbwa_          89 YSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFRFSAAS---  165 (184)
T ss_dssp             HHHHHHHGGGCCSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHTCSSCC---
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHCCCCCCC---
T ss_conf             99999987305999999999999997505657999999999999999987266116647688999602526898777---


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             54433778996699999999978999999999973
Q 005588          333 LEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE  367 (689)
Q Consensus       333 led~~~~~g~~~~ql~aa~~~~~~~~~iVe~LIen  367 (689)
                                        .....++..+|++||+|
T Consensus       166 ------------------~~~~~~~~~vve~LI~n  182 (184)
T d1pbwa_         166 ------------------SDNTENLIKVIEILIST  182 (184)
T ss_dssp             ------------------HHHHHHHHHHHHHHHHT
T ss_pred             ------------------HHHHHHHHHHHHHHHHC
T ss_conf             ------------------54699999999999847

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.1e-14  Score=113.35  Aligned_cols=105  Identities=26%  Similarity=0.383  Sum_probs=76.2

Q ss_pred             CCCCCEEEEEEEEEEECCCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEEE-CCCCCCEEE
Q ss_conf             9999468998525430388887948999999499499983799999899861155317478279841222-069851599
Q 005588           14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTV   92 (689)
Q Consensus        14 ~~~~~V~keG~L~l~kkg~~~k~WkkRWfVL~~~~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~~-~~~Kk~~fv   92 (689)
                      ..+..++++|||  ++++ ..+.|++|||||+++.|+||+++....         +.+.|+|..+..+.. ...+.+||.
T Consensus         3 ~~~~~~~~~GwL--kk~~-~~k~WkkRwfvL~~~~L~yyk~~~~~~---------~~g~i~L~~~~v~~~~~~~~~~~f~   70 (130)
T d1v88a_           3 SGSSGIVMADWL--KIRG-TLKSWTKLWCVLKPGVLLIYKTQKNGQ---------WVGTVLLNACEIIERPSKKDGFCFK   70 (130)
T ss_dssp             CSSSSCCEEEEE--EECC-SSSSCEEEEEEEETTEEEEESCSSSCC---------CCEEEECSSCEECCCCTTTSSCEEE
T ss_pred             CCCCCCEEECEE--EECC-CCCCCEEEEEEEECCEEEEECCCCCCC---------CEEEEECCCEEEEECCCCCCCCEEE
T ss_conf             888897396859--9689-799823889999199999985788775---------1468988975999866568885499


Q ss_pred             EEECC---------------------CCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             97078---------------------888179999348578999999999998407750
Q 005588           93 LFPDG---------------------RDGRAFTLKAETSEDLYEWKTALELALAQAPSA  130 (689)
Q Consensus        93 I~~~~---------------------~~~r~y~LqAdseeEl~eWI~aIr~al~~sp~~  130 (689)
                      +....                     ...+.|+|+|++++|+.+||.+|+.++...|++
T Consensus        71 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~A~s~~e~~~Wi~al~~~i~~~p~s  129 (130)
T d1v88a_          71 LFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALKSGPSS  129 (130)
T ss_dssp             EECTTCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHTTTTTC
T ss_pred             EECCCCCCEECCCCCCCCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             98688851001257665542258843895799998899999999999999996139899

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=1.7e-14  Score=114.04  Aligned_cols=102  Identities=22%  Similarity=0.347  Sum_probs=77.2

Q ss_pred             CCCCEEEEEEEEEEECC--CCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEEEC-----CCC
Q ss_conf             99946899852543038--88879489999994994999837999998998611553174782798412220-----698
Q 005588           15 ASNTVFKSGPLFISSKG--IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-----EDK   87 (689)
Q Consensus        15 ~~~~V~keG~L~l~kkg--~~~k~WkkRWfVL~~~~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~~~-----~~K   87 (689)
                      ....++|+|||+++.++  ...+.|++|||||+++.|+||+++.+..         +.+.|+|..+..+...     ..+
T Consensus       100 ~~~~~~k~G~L~K~~~~~~~~~~~Wkkr~fvL~~~~L~yy~~~~~~~---------~~~~i~L~~~~~~~~~~~~~~~~~  170 (209)
T d1u5ea1         100 DLPFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQ---------QKGEFAIDGYDVRMNNTLRKDGKK  170 (209)
T ss_dssp             GCSSEEEEEEEEEEEHHHHTTTCCCEEEEEEEETTEEEEESSTTCSS---------CSEEEECTTCEEEECGGGCSSTTG
T ss_pred             CCCCEEEEEEEEEECCCCCCCCCCCEEEEEEEECCEEEEEECCCCCC---------CCEEEEECCEEEEECCCCCCCCCC
T ss_conf             35770389999986689987656623899999999999980688775---------432897100056521432223678


Q ss_pred             CCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHC
Q ss_conf             5159997078888179999348578999999999998407
Q 005588           88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA  127 (689)
Q Consensus        88 k~~fvI~~~~~~~r~y~LqAdseeEl~eWI~aIr~al~~s  127 (689)
                      ++||.|..  +++|+|+|+|++++++.+|+.+|+.+++..
T Consensus       171 ~~~F~i~~--~~~r~~~f~a~s~~e~~~Wi~al~~~i~~~  208 (209)
T d1u5ea1         171 DCCFEICA--PDKRIYQFTAASPKDAEEWVQQLKFILQDL  208 (209)
T ss_dssp             GGEEEEEC--SSSCEEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEC--CCCCEEEEECCCHHHHHHHHHHHHHHHHHC
T ss_conf             84799984--899889998399999999999999999962

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=4.8e-14  Score=110.97  Aligned_cols=106  Identities=23%  Similarity=0.406  Sum_probs=77.5

Q ss_pred             CCCCCEEEEEEEEEEECCCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEEE----CCCCCC
Q ss_conf             9999468998525430388887948999999499499983799999899861155317478279841222----069851
Q 005588           14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV----REDKKL   89 (689)
Q Consensus        14 ~~~~~V~keG~L~l~kkg~~~k~WkkRWfVL~~~~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~~----~~~Kk~   89 (689)
                      ..++.++|+|||+  +++...+.|++|||+|+++.|+||+++....+         .+.++|..+..+..    .....+
T Consensus         3 ~g~s~~~k~G~L~--K~~~~~k~WkkR~fvL~~~~l~y~~~~~~~~~---------~~~~~l~~~~~~~~~~~~~~~~~~   71 (118)
T d1v89a_           3 SGSSGPIKMGWLK--KQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKP---------QGCMYLPGCTIKEIATNPEEAGKF   71 (118)
T ss_dssp             CSSSCEEEEEEEE--EECSSSSCEEEEEEEEETTEEEEESSSSCCSC---------SEEECSTTEEEEEECCCSSCCCCC
T ss_pred             CCCCCCEEEEEEE--EECCCCCCCEEEEEEEECCEEEEECCCCCCCC---------CCEECCCCEEEEEECCCCCCCCCC
T ss_conf             8989972899999--97899998278999998999998626675433---------320606751999840444567871


Q ss_pred             EEEEEECC-----CCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             59997078-----888179999348578999999999998407750
Q 005588           90 LTVLFPDG-----RDGRAFTLKAETSEDLYEWKTALELALAQAPSA  130 (689)
Q Consensus        90 ~fvI~~~~-----~~~r~y~LqAdseeEl~eWI~aIr~al~~sp~~  130 (689)
                      +|.+....     ...++|+|+|++++|+.+|+.+|+.++.+.|+.
T Consensus        72 ~f~l~~~~~~~~~~~~~~~~~~a~s~ee~~~Wi~aI~~a~~~~p~s  117 (118)
T d1v89a_          72 VFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGSGPSS  117 (118)
T ss_dssp             EEEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHHCCSCC
T ss_pred             EEEEECCCCCCEECCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             7999637876201388279998199999999999999997459899

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3e-14  Score=112.36  Aligned_cols=100  Identities=19%  Similarity=0.305  Sum_probs=76.8

Q ss_pred             CCCCCEEEEEEEEEEECCCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEEEC---CCCCCE
Q ss_conf             99994689985254303888879489999994994999837999998998611553174782798412220---698515
Q 005588           14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---EDKKLL   90 (689)
Q Consensus        14 ~~~~~V~keG~L~l~kkg~~~k~WkkRWfVL~~~~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~~~---~~Kk~~   90 (689)
                      .....+.++|||+  ++|...+.|++|||||+++.|+||+++.+..         +.+.|+|..+..+...   ....++
T Consensus         6 ~~~~~~~~eG~L~--k~~~~~k~WkkrwfvL~~~~L~yY~~~~d~~---------~~~~i~L~~~~~~~~~~~~~~~~~~   74 (136)
T d1x1fa1           6 ITALPLYFEGFLL--IKRSGYREYEHYWTELRGTTLFFYTDKKSII---------YVDKLDIVDLTCLTEQNSTEKNCAK   74 (136)
T ss_dssp             CSSSCEEEEEEEE--EECTTCCSCEEEEEEEETTEEEEESCSSCSS---------CSEECCCSSCCEEEECCCTTSCCCE
T ss_pred             CCCCCCCEEEEEE--EECCCCCCEEEEEEEECCCEEEEEEECCCCC---------CCCCCCCCCEEEEEEECCCCCCCCE
T ss_conf             5789954798999--9779999847899998699767775024544---------4420023321232100112455511


Q ss_pred             EEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHC
Q ss_conf             9997078888179999348578999999999998407
Q 005588           91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA  127 (689)
Q Consensus        91 fvI~~~~~~~r~y~LqAdseeEl~eWI~aIr~al~~s  127 (689)
                      |.|...   .++|+|+|+|.+|+.+|+.+|+.++...
T Consensus        75 F~i~~~---~~~~~f~Aes~~e~~~Wi~~I~~v~~~~  108 (136)
T d1x1fa1          75 FTLVLP---KEEVQLKTENTESGEEWRGFILTVTELS  108 (136)
T ss_dssp             EEEECS---SCCEEEECSSHHHHHHHHHHHHHHHHSS
T ss_pred             EEECCC---CCEEEEEECCHHHHHHHHHHHHHHHHCC
T ss_conf             550479---9569999299999999999999998614

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.5e-14  Score=111.87  Aligned_cols=98  Identities=29%  Similarity=0.361  Sum_probs=73.1

Q ss_pred             CEEEEEEEEEEECCCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEEE---CCCCCCEEEEE
Q ss_conf             468998525430388887948999999499499983799999899861155317478279841222---06985159997
Q 005588           18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV---REDKKLLTVLF   94 (689)
Q Consensus        18 ~V~keG~L~l~kkg~~~k~WkkRWfVL~~~~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~~---~~~Kk~~fvI~   94 (689)
                      .|+|+|||+++..+...+.|++|||+|+++.|+||+++....         +.+.+++..+.....   ...++++|.+.
T Consensus         2 ~vik~GwL~k~~~~~~~~~WkkRwFvL~~~~L~yyk~~~~~~---------~~~~i~l~~~~v~~~~~~~~~~~~~F~l~   72 (111)
T d2dyna_           2 LVIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKE---------KKYMLSVDNLKLRDVEKGFMSSKHIFALF   72 (111)
T ss_dssp             CEEEEEEEEETTCCTTTTSSEEEEEEEESSEEEEESSTTCCC---------EEEEEECTTEEEEEECCCSTTCSEEEEEE
T ss_pred             EEEEEEEEEEECCCCCCCCCEEEEEEEECCEEEEECCHHHCC---------CCCCCCCCCCEEEEECCCCCCCCCCEEEE
T ss_conf             699970299978998768736889999799998976534435---------44556532211576313322354527721


Q ss_pred             ECC-----CCCCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             078-----888179999348578999999999998
Q 005588           95 PDG-----RDGRAFTLKAETSEDLYEWKTALELAL  124 (689)
Q Consensus        95 ~~~-----~~~r~y~LqAdseeEl~eWI~aIr~al  124 (689)
                      +..     .+.++|+|+|++++|+.+|+.+|..|.
T Consensus        73 ~~~~~~~~~~~r~~~l~a~s~ed~~~W~~al~~A~  107 (111)
T d2dyna_          73 NTEQRNVYKDYRQLELACETQEEVDSWKASFLRAG  107 (111)
T ss_dssp             ESSCSCSBTTBSSEEEEESSHHHHHHHHHHHHHTT
T ss_pred             ECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHC
T ss_conf             11333223675069997799999999999999702

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.6e-14  Score=111.78  Aligned_cols=96  Identities=31%  Similarity=0.424  Sum_probs=76.5

Q ss_pred             CCEEEEEEEEEEECCCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEEEC--CCCCCEEEEE
Q ss_conf             94689985254303888879489999994994999837999998998611553174782798412220--6985159997
Q 005588           17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--EDKKLLTVLF   94 (689)
Q Consensus        17 ~~V~keG~L~l~kkg~~~k~WkkRWfVL~~~~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~~~--~~Kk~~fvI~   94 (689)
                      +...|+|||+  ++|...+.|++|||||+++.|+||+++.+..         +.+.|+|..+..+...  ..+.++|.|.
T Consensus         2 ~~~~KeG~L~--K~~~~~k~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~~v~~~~~~~~~~~F~i~   70 (100)
T d1faoa_           2 SLGTKEGYLT--KQGGLVKTWKTRWFTLHRNELKYFKDQMSPE---------PIRILDLTECSAVQFDYSQERVNCFCLV   70 (100)
T ss_dssp             CTTCEEEEEE--EECSSSCCEEEEEEEEETTEEEEESSTTCSS---------CSEEEEGGGCCEEEEECSSSSSSEEEEE
T ss_pred             CCCCEEEEEE--EECCCCCCCEEEEEEEECCEEEEEECCCCCC---------CCEEEECHHEEEEEECCCCCCCCCCCCC
T ss_conf             9765799999--9689999826899999899999985357765---------7607820115898716543456623243


Q ss_pred             ECCCCCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             07888817999934857899999999999840
Q 005588           95 PDGRDGRAFTLKAETSEDLYEWKTALELALAQ  126 (689)
Q Consensus        95 ~~~~~~r~y~LqAdseeEl~eWI~aIr~al~~  126 (689)
                      ..   .++|+|+|++.+++++|+.+|+.++.+
T Consensus        71 ~~---~r~~~l~a~s~~~~~~Wi~ai~~~i~~   99 (100)
T d1faoa_          71 FP---FRTFYLCAKTGVEADEWIKILRWKLSQ   99 (100)
T ss_dssp             ET---TEEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             CC---CEEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf             69---828999909999999999999999861

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=4.5e-14  Score=111.14  Aligned_cols=104  Identities=24%  Similarity=0.412  Sum_probs=77.5

Q ss_pred             EEEEEEEEEEECCCCCCCCEEEEEEEE--CCEEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEEECC-----CCCCEE
Q ss_conf             689985254303888879489999994--9949998379999989986115531747827984122206-----985159
Q 005588           19 VFKSGPLFISSKGIGWKSWKKRWFILT--RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE-----DKKLLT   91 (689)
Q Consensus        19 V~keG~L~l~kkg~~~k~WkkRWfVL~--~~~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~~~~-----~Kk~~f   91 (689)
                      ..++|||+++.+. ..+.|++|||||.  ++.|+||++++...+.+..    +++.|.+..+..+....     ...++|
T Consensus        15 ~~~~GyL~k~~~~-~~k~WkrRwFvL~~~~~~L~yy~~~~~~~~~g~~----~l~~i~~~~~~~~~~~~~~~~~~~~~~~   89 (126)
T d1v5pa_          15 NRICGFLDIEDNE-NSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAG----AVGSLQLTYISKVSIATPKQKPKTPFCF   89 (126)
T ss_dssp             CCEECCEEEECTT-CSSCEEEEEEEEETTTTEEEEESSCTTTSCTTCC----CSEEEETTTCCEEEECCTTTSCSCSSEE
T ss_pred             CCEEEEEEEECCC-CCCCEEEEEEEEECCCCEEEEEECCCCCCCCCEE----ECCCCEEEEEECCCCCCCCCCCCCCCEE
T ss_conf             7556668987898-8897368899997589838886036444322115----5366135200000122331012442168


Q ss_pred             EEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             997078888179999348578999999999998407750
Q 005588           92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSA  130 (689)
Q Consensus        92 vI~~~~~~~r~y~LqAdseeEl~eWI~aIr~al~~sp~~  130 (689)
                      .+..   ..+.|+|+|+|++|+.+|+.+|+.++...|++
T Consensus        90 ~~~~---~~r~~~l~Aes~~e~~~Wi~aL~~A~~~~P~s  125 (126)
T d1v5pa_          90 VINA---LSQRYFLQANDQKDLKDWVEALNQASKSGPSS  125 (126)
T ss_dssp             EEEC---SSCEEEEECSSHHHHHHHHHHHHHTTTTSSSC
T ss_pred             EECC---CCEEEEEECCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             8707---98059997899999999999999986128999

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.8e-14  Score=111.67  Aligned_cols=109  Identities=24%  Similarity=0.334  Sum_probs=77.3

Q ss_pred             CCCCCCCEEEEEEEEEEECCC----CCCCCEEEEEEEECC-----EEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEE
Q ss_conf             999999468998525430388----887948999999499-----49998379999989986115531747827984122
Q 005588           12 RPGASNTVFKSGPLFISSKGI----GWKSWKKRWFILTRT-----SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV   82 (689)
Q Consensus        12 ~~~~~~~V~keG~L~l~kkg~----~~k~WkkRWfVL~~~-----~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~   82 (689)
                      .......|+|+|||+++....    ..+.|++|||||++.     .|.||+++.....        +.+.|.+..+..+.
T Consensus        11 ~~~~~~~v~k~G~L~K~~~~~~~~~~~k~WkkR~fvL~~~~~~~~~L~yy~~~~~~~~--------~~g~i~l~~~~~~~   82 (150)
T d1wg7a_          11 LGSQKGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKE--------PKGSIFLDSCMGVV   82 (150)
T ss_dssp             CCBCSCCCCCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCCSSC--------CSEEECTTTCCEEC
T ss_pred             CCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCC--------CCCCCCCCCCCCCC
T ss_conf             6777898868988887567777664446642899999747678606889951445645--------43210124531001


Q ss_pred             EC-CCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             20-6985159997078888179999348578999999999998407750
Q 005588           83 VR-EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSA  130 (689)
Q Consensus        83 ~~-~~Kk~~fvI~~~~~~~r~y~LqAdseeEl~eWI~aIr~al~~sp~~  130 (689)
                      .. ..++++|.|..  .+.+.|+|+|++++|+++|+.+|+.++...+..
T Consensus        83 ~~~~~~~~~F~i~~--~~~~~~~l~A~s~~e~~~Wi~aL~~~i~~~~~~  129 (150)
T d1wg7a_          83 QNNKVRRFAFELKM--QDKSSYLLAADSEVEMEEWITILNKILQLNFEA  129 (150)
T ss_dssp             CCCSSCTTEEEEEC--SSSCEEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEEEC--CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             47655654799982--898289998099799999999999998763566

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=3.9e-14  Score=111.57  Aligned_cols=96  Identities=16%  Similarity=0.332  Sum_probs=73.7

Q ss_pred             EEEEEEEEEECCCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEEEC---CCCCCEEEEEEC
Q ss_conf             89985254303888879489999994994999837999998998611553174782798412220---698515999707
Q 005588           20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---EDKKLLTVLFPD   96 (689)
Q Consensus        20 ~keG~L~l~kkg~~~k~WkkRWfVL~~~~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~~~---~~Kk~~fvI~~~   96 (689)
                      +|+||||+.  +...+.|++|||+|+++.|+||+++....         +.+.+++..+..+...   ..+.++|.|...
T Consensus         2 iK~G~L~k~--~~~~k~W~kR~fvL~~~~L~yy~~~~~~~---------~~~~i~l~~~~v~~~~~~~~~~~~~f~i~~~   70 (101)
T d2fjla1           2 IKNGILYLE--DPVNHEWYPHYFVLTSSKIYYSEETSSDL---------LRGVLDVPACQIAIRPEGKNNRLFVFSISMP   70 (101)
T ss_dssp             CEEEEEEEE--ETTTTEEEEEEEEEETTEEEECCCCSCTC---------CCEEECSTTCEEEEETTCSSSCSCEEEEECT
T ss_pred             CEEEEEEEE--CCCCCCCEEEEEEEECCEEEEEECCCCCE---------ECCEEECCCCEEEEEEEECCCCCCEEEEECC
T ss_conf             568999997--68889872899999799989970436440---------2223871785167652101245514699605


Q ss_pred             CCCCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             888817999934857899999999999840
Q 005588           97 GRDGRAFTLKAETSEDLYEWKTALELALAQ  126 (689)
Q Consensus        97 ~~~~r~y~LqAdseeEl~eWI~aIr~al~~  126 (689)
                      ....++|+|+|++++|+.+|+.+|+.+++.
T Consensus        71 ~~~~~~~~~~a~s~~e~~~Wi~ai~~~~~~  100 (101)
T d2fjla1          71 SVAQWSLDVAADSQEELQDWVKKIREVAQT  100 (101)
T ss_dssp             TTSSCCEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEEEECCHHHHHHHHHHHHHHHHC
T ss_conf             666379999909999999999999999854

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=1.2e-13  Score=108.31  Aligned_cols=108  Identities=22%  Similarity=0.284  Sum_probs=76.4

Q ss_pred             CCCCCCCCEEEEEEEEEE------ECCCCCCCCEEEEEEEECC------EEEEECCCCCCCCCCCCEEEEEECCEECCCC
Q ss_conf             999999946899852543------0388887948999999499------4999837999998998611553174782798
Q 005588           11 PRPGASNTVFKSGPLFIS------SKGIGWKSWKKRWFILTRT------SLVFFKNDPSALPQRGGEVNLTLGGIDLNNS   78 (689)
Q Consensus        11 ~~~~~~~~V~keG~L~l~------kkg~~~k~WkkRWfVL~~~------~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~   78 (689)
                      .+......|.|+|||..+      +.+.+.+.|++|||||+++      .|.||+++....|.+         .|.+..+
T Consensus        10 ~~~~~~~~v~keG~L~~~~~~~~~~~~~~~~~WkkrwfvL~~~~~~~~~~L~yy~~~~~~k~~g---------~i~l~~~   80 (136)
T d1v5ma_          10 AAKVELVDIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRPKV---------SIPLSAI   80 (136)
T ss_dssp             CCCCCSCSCCEEEEEEEEECSCCCSSSCCSCCCEEEEEEEEECSSSCCEEEEEESSTTSSSCSS---------CEETTTC
T ss_pred             CCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCC---------CEECCCC
T ss_conf             4456545046898877521355568897778753899999677665311133307500127576---------4002451


Q ss_pred             CCE-----EECCCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             412-----220698515999707888817999934857899999999999840775
Q 005588           79 GSV-----VVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS  129 (689)
Q Consensus        79 ~sv-----~~~~~Kk~~fvI~~~~~~~r~y~LqAdseeEl~eWI~aIr~al~~sp~  129 (689)
                      ..+     .....++++|.|..  .+.+.|+|+|+|++|+++||.+|+.++...|+
T Consensus        81 ~~~~~~~~~~~~~~~~~F~l~t--~~~~~y~f~A~s~~e~~~Wv~ai~~ai~~~~~  134 (136)
T d1v5ma_          81 IEVRTTMPLEMPEKDNTFVLKV--ENGAEYILETIDSLQKHSWVADIQGCVDSGPS  134 (136)
T ss_dssp             CBCCCCCCSSSCCCTTEECCBC--TTSCBEEEECSSHHHHHHHHHHHHHHHHHSCS
T ss_pred             EEEEEECCCCCCCCCCEEEEEC--CCCCEEEEECCCHHHHHHHHHHHHHHHHCCCC
T ss_conf             3454101335788871899986--89969999879999999999999999732999

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=5.8e-14  Score=110.37  Aligned_cols=103  Identities=25%  Similarity=0.433  Sum_probs=74.7

Q ss_pred             CCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEC--CEEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEEE--------
Q ss_conf             999946899852543038888794899999949--9499983799999899861155317478279841222--------
Q 005588           14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTR--TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV--------   83 (689)
Q Consensus        14 ~~~~~V~keG~L~l~kkg~~~k~WkkRWfVL~~--~~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~~--------   83 (689)
                      ..++.+.++|||+  +++...+.|++|||||++  ..|+||+++.+..|         .+.|.|..+..+..        
T Consensus         3 ~~~s~~~~eG~L~--k~~~~~k~WkkR~fvL~~~~~~L~~~~~~~~~~p---------~g~i~l~~~~~v~~~~~~~~~~   71 (117)
T d1v5ua_           3 SGSSGRSYEGILY--KKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTEC---------KGVIDLAEVEAVAPGTPTIGAP   71 (117)
T ss_dssp             SSCCSSSEEEEEE--ECCCSSSCCEEEEEEEETTTTEEEEESSSSCSSC---------CCEEEGGGEEEEECCCCCTTSC
T ss_pred             CCCCCCEEEEEEE--EECCCCCCCEEEEEEEECCCCEEEECCCCCCCCC---------CEEEEECCEEEEEECCCCCCCC
T ss_conf             8989981899999--9899999851899999589898985155344676---------3178704438985036531113


Q ss_pred             -CCCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             -06985159997078888179999348578999999999998407750
Q 005588           84 -REDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSA  130 (689)
Q Consensus        84 -~~~Kk~~fvI~~~~~~~r~y~LqAdseeEl~eWI~aIr~al~~sp~~  130 (689)
                       .....++|.+..   .+++|+|+|++++|+++|+.+|+.++...|++
T Consensus        72 ~~~~~~~~~~~~~---~~~~~~~~a~s~~e~~~Wv~~l~~ai~~~pss  116 (117)
T d1v5ua_          72 KTVDEKAFFDVKT---TRRVYNFCAQDVPSAQQWVDRIQSCLSSGPSS  116 (117)
T ss_dssp             SSSCTTTCEEEEE---SSCEEEEECSSHHHHHHHHHHHHTTCCCCCCC
T ss_pred             CCCCCCEEEEEEC---CCCEEEEEECCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             4566415899608---99379999099999999999999998529999

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=7.2e-14  Score=109.76  Aligned_cols=103  Identities=18%  Similarity=0.280  Sum_probs=75.8

Q ss_pred             CCCCCEEEEEEEEEEECCCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEE--ECCCCCCEE
Q ss_conf             999946899852543038888794899999949949998379999989986115531747827984122--206985159
Q 005588           14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV--VREDKKLLT   91 (689)
Q Consensus        14 ~~~~~V~keG~L~l~kkg~~~k~WkkRWfVL~~~~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~--~~~~Kk~~f   91 (689)
                      ..++.+.++|||++  ++...+.|++|||+|+++.|+||+++....+         ...|.+..+....  ....++++|
T Consensus         3 ~~~~~~~~~G~L~k--~~~~~~~W~kr~~vL~~~~L~~~k~~~~~~~---------~~~i~l~~~~~~~~~~~~~~~~~F   71 (109)
T d1wgqa_           3 SGSSGSTMSGYLYR--SKGSKKPWKHLWFVIKNKVLYTYAASEDVAA---------LESQPLLGFTVTLVKDENSESKVF   71 (109)
T ss_dssp             SCCCSCSCEEEEEE--ESSTTSCCEEEEEEEETTEEEEESCTTCSSC---------SEEEECSSEEEEECCCSSCSSSEE
T ss_pred             CCCCCCCEEEEEEE--ECCCCCCCEEEEEEEECCEEEEECCCCCCCC---------CCCCCCCEEEEEECCCCCCCCEEE
T ss_conf             89899838999999--8899998638899981999998636665544---------111343024554112455652154


Q ss_pred             EEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99707888817999934857899999999999840775
Q 005588           92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS  129 (689)
Q Consensus        92 vI~~~~~~~r~y~LqAdseeEl~eWI~aIr~al~~sp~  129 (689)
                      .|...  +.++|+|+|++++++.+|+.+|+.++.+.|+
T Consensus        72 ~i~~~--~~~~~~f~a~s~~~~~~Wi~ai~~a~~~~ps  107 (109)
T d1wgqa_          72 QLLHK--GMVFYVFKADDAHSTQRWIDAFQEGTVSGPS  107 (109)
T ss_dssp             EEEET--TEEEEEEECSSHHHHHHHHHHHHHHHSCCCC
T ss_pred             EEECC--CCEEEEEECCCHHHHHHHHHHHHHHHCCCCC
T ss_conf             45415--6347999779999999999999999625998

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Protein kinase c, d2 type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=8.1e-14  Score=109.40  Aligned_cols=91  Identities=15%  Similarity=0.202  Sum_probs=71.5

Q ss_pred             EEEEEEEEEECCCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEEEC--------CCCCCEE
Q ss_conf             89985254303888879489999994994999837999998998611553174782798412220--------6985159
Q 005588           20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--------EDKKLLT   91 (689)
Q Consensus        20 ~keG~L~l~kkg~~~k~WkkRWfVL~~~~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~~~--------~~Kk~~f   91 (689)
                      +|+|||.  ++|...+.|++|||||+++.|.||+++.+..         +.+.|+|..+..+...        ..+.+||
T Consensus         2 lk~GwL~--k~~~~~~~wkkRwFvL~~~~L~YYk~~~~~~---------p~g~I~L~~~~~v~~~~~~~~~~~~~~~~~F   70 (112)
T d2coaa1           2 LREGWVV--HYSNKDTLRKRHYWRLDCKCITLFQNNTTNR---------YYKEIPLSEILTVESAQNFSLVPPGTNPHCF   70 (112)
T ss_dssp             SEEEEEE--ECCSSSCCCEEEEEEECSSEEEEESSSSCSS---------CSEEEETTTCCEEEESCCCSSSCTTSCCEEE
T ss_pred             CEEEEEE--EECCCCCCEEEEEEEEECCEEEEEECCCCCC---------CCEEEEEECCCCCCCCCCCCCCCCCCCCCEE
T ss_conf             3378789--9878998705889999725678981358876---------4418820023010133343321257885279


Q ss_pred             EEEECCCCCCEEEEEE-----------CCHHHHHHHHHHHHHHH
Q ss_conf             9970788881799993-----------48578999999999998
Q 005588           92 VLFPDGRDGRAFTLKA-----------ETSEDLYEWKTALELAL  124 (689)
Q Consensus        92 vI~~~~~~~r~y~LqA-----------dseeEl~eWI~aIr~al  124 (689)
                      .|..   +.|+|+|.|           ++++++.+|+.+|++|+
T Consensus        71 ~I~T---~~rtyy~~~~~~~~~~~~s~~~~~~~~~W~~aI~~A~  111 (112)
T d2coaa1          71 EIVT---ANATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQAL  111 (112)
T ss_dssp             EEEC---SSCCCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHHG
T ss_pred             EEEE---CCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             9984---8847998537866666533357699999999999962

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.1e-13  Score=108.48  Aligned_cols=106  Identities=21%  Similarity=0.338  Sum_probs=78.0

Q ss_pred             CCCCEEEEEEEEEEECCCCCCCCEEEEEEEEC-CEEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEEECCCCCCEEEE
Q ss_conf             99946899852543038888794899999949-94999837999998998611553174782798412220698515999
Q 005588           15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTR-TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL   93 (689)
Q Consensus        15 ~~~~V~keG~L~l~kkg~~~k~WkkRWfVL~~-~~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~~~~~Kk~~fvI   93 (689)
                      ....|+|+|||+  ++|...+.|++|||||++ +.|+||++++...+.+..    +++.+.+..+..+.....+.++|.+
T Consensus         3 ~~~~v~k~G~L~--K~~~~~k~Wk~RwfvL~~~~~l~~~~~~~~~~~~~~i----~l~~~~~~~~~~~~~~~~~~~~f~i   76 (118)
T d1unqa_           3 SDVAIVKEGWLH--KRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREA----PLNNFSVAQCQLMKTERPRPNTFII   76 (118)
T ss_dssp             GGGCEEEEEEEE--EECSSSCCEEEEEEEEETTSEEEEESSCCCSHHHHTS----CSEEEECTTCEEEEECSSSTTEEEE
T ss_pred             CCCCEEEEEEEE--EECCCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCC----CCCCEEEEECCCCCCCCCCCCEEEE
T ss_conf             768788999999--9899999967789999455226899601576544541----3540577300111344357724999


Q ss_pred             EE-CCCCCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             70-7888817999934857899999999999840
Q 005588           94 FP-DGRDGRAFTLKAETSEDLYEWKTALELALAQ  126 (689)
Q Consensus        94 ~~-~~~~~r~y~LqAdseeEl~eWI~aIr~al~~  126 (689)
                      .. .....+.|+|+|++++|+.+|+.+|+.++..
T Consensus        77 ~~~~~~~~~~~~f~a~s~~e~~~Wi~ai~~~~~~  110 (118)
T d1unqa_          77 RCLQWTTVIERTFHVETPEEREEWTTAIQTVADG  110 (118)
T ss_dssp             EEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             EECCCCCEEEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf             9536534057999949999999999999999998

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.6e-13  Score=107.36  Aligned_cols=103  Identities=20%  Similarity=0.300  Sum_probs=67.6

Q ss_pred             CCCCCEEEEEEEEEEECCCCCCCCEEEEEEEECC--EEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEEE-----CCC
Q ss_conf             9999468998525430388887948999999499--499983799999899861155317478279841222-----069
Q 005588           14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRT--SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-----RED   86 (689)
Q Consensus        14 ~~~~~V~keG~L~l~kkg~~~k~WkkRWfVL~~~--~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~~-----~~~   86 (689)
                      ..+..+.++||||++.+. ..+.|++|||||+++  .++||+++......       +.+.|.+..+..+..     ...
T Consensus         3 s~~~~~~~~G~L~K~g~~-~~k~WkkRwfvL~~~~~~~yy~~~~~~~~~~-------~~~~i~l~~~~~~~~~~~~~~~~   74 (126)
T d1wi1a_           3 SGSSGMKHSGYLWAIGKN-VWKRWKKRFFVLVQVSQYTFAMCSYREKKAE-------PQELLQLDGYTVDYTDPQPGLEG   74 (126)
T ss_dssp             CCCCCEEEEEEEEEECSS-SCCSCEEEEEEEEEEETTEEEEEECCSSSSC-------CSEEEECSSCEEEECCCCSSCCS
T ss_pred             CCCCCCCEEEEEEEECCC-CCCCCEEEEEEEECCCEEEEEECCCCCCCCC-------CEEEEEECEEEEEECCCCCCCCC
T ss_conf             898998688899997899-8887227999995895699997340023433-------10246300035530122223334


Q ss_pred             CCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHC
Q ss_conf             85159997078888179999348578999999999998407
Q 005588           87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA  127 (689)
Q Consensus        87 Kk~~fvI~~~~~~~r~y~LqAdseeEl~eWI~aIr~al~~s  127 (689)
                      +.++|++..   .+++|+|+|++++|+.+||.+|..++.++
T Consensus        75 ~~~~~~i~~---~~r~~~f~A~s~~e~~~Wv~al~~a~~~~  112 (126)
T d1wi1a_          75 GRAFFNAVK---EGDTVIFASDDEQDRILWVQAMYRATGQS  112 (126)
T ss_dssp             CSSEEEEEC---SSCEEEEECSSHHHHHHHHHHHHHHHTCS
T ss_pred             CCEEEEECC---CCEEEEEEECCHHHHHHHHHHHHHHHHHH
T ss_conf             421478516---97489999799999999999999998864

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.7e-13  Score=107.23  Aligned_cols=99  Identities=18%  Similarity=0.254  Sum_probs=73.3

Q ss_pred             EEEEEEEEE--------ECCCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEEEC--CCCCC
Q ss_conf             899852543--------03888879489999994994999837999998998611553174782798412220--69851
Q 005588           20 FKSGPLFIS--------SKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--EDKKL   89 (689)
Q Consensus        20 ~keG~L~l~--------kkg~~~k~WkkRWfVL~~~~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~~~--~~Kk~   89 (689)
                      .|+|||+++        +.+.+.+.|++|||||+++.|+||+++.......     .+.+.|+|..+......  ..+++
T Consensus         2 ~KeG~L~~k~~~~~~~kk~~~~~k~Wkkr~fvL~~~~L~~y~~~~~~~~~~-----~~~~~i~L~~~~v~~~~~~~~r~~   76 (133)
T d2j59m1           2 AKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPS-----EEEQPISVNACLIDISYSETKRKN   76 (133)
T ss_dssp             CEEEEEEEEECC------------CCEEEEEEEETTEEEEESCTTCC-------------CEECSSCEEEECSSSCSCSS
T ss_pred             CCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCCC-----CCCCCCEECCEEEEECCCCCCCCC
T ss_conf             703888742145545522488778844999999389899880124312466-----665531112349997243456674


Q ss_pred             EEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             5999707888817999934857899999999999840
Q 005588           90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ  126 (689)
Q Consensus        90 ~fvI~~~~~~~r~y~LqAdseeEl~eWI~aIr~al~~  126 (689)
                      +|.|...   ++.|+|+|++++|+.+|+.+|+.++..
T Consensus        77 ~F~i~~~---~~~~~f~A~s~~e~~~Wi~ai~~a~~~  110 (133)
T d2j59m1          77 VFRLTTS---DCECLFQAEDRDDMLAWIKTIQESSNL  110 (133)
T ss_dssp             EEEEECS---SCEEEEECSSHHHHHHHHHHHHHHCCC
T ss_pred             EEEEECC---CCEEEEEECCHHHHHHHHHHHHHHHHC
T ss_conf             1688649---978999929989999999999998732

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.8e-13  Score=105.70  Aligned_cols=99  Identities=26%  Similarity=0.401  Sum_probs=69.1

Q ss_pred             CCCCCEEEEEEEEEEECCCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEEE----CCCCCC
Q ss_conf             9999468998525430388887948999999499499983799999899861155317478279841222----069851
Q 005588           14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV----REDKKL   89 (689)
Q Consensus        14 ~~~~~V~keG~L~l~kkg~~~k~WkkRWfVL~~~~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~~----~~~Kk~   89 (689)
                      .+...+.++|||++... ...+.|++|||+|+++.|+||+++....|         .+.+++..+..+..    ...+++
T Consensus         4 ~p~~~~~~~G~L~k~~~-~~~k~W~kr~~vL~~~~L~~y~~~~~~~~---------~~~i~l~~~~v~~~~~~~~~~~~~   73 (107)
T d1upqa_           4 DPNLPVHIRGWLHKQDS-SGLRLWKRRWFVLSGHCLFYYKDSREESV---------LGSVLLPSYNIRPDGPGAPRGRRF   73 (107)
T ss_dssp             CTTSCEEEEEEEEEECS-SSSCCEEEEEEEEETTEEEEESSTTCCSC---------CEEEEGGGCEEEECCSSCTTSSSS
T ss_pred             CCCCCEEEEEEEEEECC-CCCCCEEEEEEEEECCEEEEECCCCCCCC---------CCEECCCCEEEEEECCCCCCCCCE
T ss_conf             96996018999998389-99998069999998999988447454566---------521635430898722675458655


Q ss_pred             EEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             59997078888179999348578999999999998
Q 005588           90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL  124 (689)
Q Consensus        90 ~fvI~~~~~~~r~y~LqAdseeEl~eWI~aIr~al  124 (689)
                      +|.+.  ..+.++|+|+|++++|+.+|+.+|+.|.
T Consensus        74 ~~~i~--~~~~~~~~~~a~s~~e~~~Wi~al~~A~  106 (107)
T d1upqa_          74 TFTAE--HPGMRTYVLAADTLEDLRGWLRALGRAS  106 (107)
T ss_dssp             EEEEE--CTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             EEEEE--CCCCEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf             99997--6999599998699999999999999974

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.5e-13  Score=107.48  Aligned_cols=97  Identities=22%  Similarity=0.374  Sum_probs=73.0

Q ss_pred             EEEEEEEEEEECCC--CCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEE-----ECCCCCCEE
Q ss_conf             68998525430388--88794899999949949998379999989986115531747827984122-----206985159
Q 005588           19 VFKSGPLFISSKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV-----VREDKKLLT   91 (689)
Q Consensus        19 V~keG~L~l~kkg~--~~k~WkkRWfVL~~~~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~-----~~~~Kk~~f   91 (689)
                      |+|+|||++..++.  ..+.|++|||+|+++.|+||+++....         +.+.|++..+....     ....+.++|
T Consensus         1 vik~G~L~k~~~~~~~~~~~Wkkr~~vL~~~~L~y~~~~~~~~---------~~~~i~l~~~~~~~~~~~~~~~~~~~~f   71 (106)
T d1u5da1           1 VIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQ---------PKGTFLIKGYSVRMAPHLRRDSKKESCF   71 (106)
T ss_dssp             EEEEEEEEEEEECSSSSCEEEEEEEEEEETTEEEEESSTTCSS---------CSEEEECTTCEEEECGGGCSSGGGGGEE
T ss_pred             CEEEEEEEEECCCCCCCCCCCEEEEEEEECCEEEEEECCCCCC---------CCCCCCCCCCEEEECCCCCCCCCCCEEE
T ss_conf             9699999987899997768818999999899999993335545---------4242224785676011102456772057


Q ss_pred             EEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             99707888817999934857899999999999840
Q 005588           92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ  126 (689)
Q Consensus        92 vI~~~~~~~r~y~LqAdseeEl~eWI~aIr~al~~  126 (689)
                      .|...  +++.|+|+|++++|+.+|+.+|+.++..
T Consensus        72 ~i~~~--~~~~~~f~a~s~~e~~~W~~ai~~~i~~  104 (106)
T d1u5da1          72 ELTSQ--DRRTYEFTATSPAEARDWVDQISFLLKD  104 (106)
T ss_dssp             EEECS--SSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             EEECC--CCCEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf             99858--9819999929999999999999999997

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.8e-13  Score=105.68  Aligned_cols=104  Identities=18%  Similarity=0.153  Sum_probs=72.4

Q ss_pred             CEEEEEEEEEEECCC---CCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEEEC----------
Q ss_conf             468998525430388---8879489999994994999837999998998611553174782798412220----------
Q 005588           18 TVFKSGPLFISSKGI---GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR----------   84 (689)
Q Consensus        18 ~V~keG~L~l~kkg~---~~k~WkkRWfVL~~~~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~~~----------   84 (689)
                      .|+++|||.++..+.   ...+|++|||||+++.|.||+++....+..     .+.+.|+|..+..|...          
T Consensus         2 ~vi~eG~L~Kr~~~k~k~~~~~WkrRwFVL~~~~L~Yyk~~~~~~~~~-----~~kG~I~L~~~~~v~~~~~~~~~~~~~   76 (169)
T d1btka_           2 AVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRG-----SKKGSIDVEKITCVETVVPEKNPPPER   76 (169)
T ss_dssp             CCCEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTTTEEE-----EEEEEEEGGGEEEEEECCCCSSCCGGG
T ss_pred             CEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCEEEEECCCCCCCCCC-----CCCCEEECCCEEEEEEECCCCCCCCCC
T ss_conf             477998999736998776767831899999799770223641100145-----766347602327877503667887433


Q ss_pred             ------------------CCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             ------------------698515999707888817999934857899999999999840775
Q 005588           85 ------------------EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS  129 (689)
Q Consensus        85 ------------------~~Kk~~fvI~~~~~~~r~y~LqAdseeEl~eWI~aIr~al~~sp~  129 (689)
                                        ....++|.|..   ..++|+|+|+|++|+.+||.+|+.++...+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~F~I~t---~~rt~~l~A~s~eE~~~WI~aL~~~i~~~~~  136 (169)
T d1btka_          77 QIPRRGEESSEMEQISIIERFPYPFQVVY---DEGPLYVFSPTEELRKRWIHQLKNVIRYNSD  136 (169)
T ss_dssp             CC---------CCTTHHHHCCCEEEEEEE---TTCCEEEEESCHHHHHHHHHHHHHHHTTCSC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEEEE---CCCEEEEECCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             23333444333222223556675469995---8937999789999999999999999986802

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.2e-13  Score=106.50  Aligned_cols=94  Identities=26%  Similarity=0.359  Sum_probs=73.8

Q ss_pred             EEEEEEEEEECCCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEEECCCCCCEEEEEECCCC
Q ss_conf             89985254303888879489999994994999837999998998611553174782798412220698515999707888
Q 005588           20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD   99 (689)
Q Consensus        20 ~keG~L~l~kkg~~~k~WkkRWfVL~~~~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~~~~~Kk~~fvI~~~~~~   99 (689)
                      +|+|||+++. +.+.+.|++|||+|+++.|.||+++.+..         +.+.|+|..+..+..  .+.++|.|...   
T Consensus         2 ik~G~L~K~~-~~~~~~W~kr~fvL~~~~L~~~~~~~~~~---------~~~~i~L~~~~~~~~--~~~~~f~i~~~---   66 (102)
T d2coda1           2 VKSGWLDKLS-PQGKRMFQKRWVKFDGLSISYYNNEKEMY---------SKGIIPLSAISTVRV--QGDNKFEVVTT---   66 (102)
T ss_dssp             CEEEEEEECC-SSSSSCCEEEEEEECSSEEEEEESSCCSS---------CCCEEETTTEEEEEE--ETTTEEEEEES---
T ss_pred             CEEEEEEEEC-CCCCCCCEEEEEEEECCEEEEEECCCCCE---------EEEEEECHHCEEECC--CCCEEEEEECC---
T ss_conf             3899999979-99999825799999799998884267621---------477889036266223--44125899749---


Q ss_pred             CCEEEEEECCHHHHHHHHHHHHHHHHHCC
Q ss_conf             81799993485789999999999984077
Q 005588          100 GRAFTLKAETSEDLYEWKTALELALAQAP  128 (689)
Q Consensus       100 ~r~y~LqAdseeEl~eWI~aIr~al~~sp  128 (689)
                      +++|+|+|++.+|+.+|+.+|+.++...+
T Consensus        67 ~~~~~l~a~s~~e~~~Wi~ai~~~i~~~~   95 (102)
T d2coda1          67 QRTFVFRVEKEEERNDWISILLNALKSQS   95 (102)
T ss_dssp             SCCEEEECSSHHHHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHHHHHCC
T ss_conf             91799994999999999999999998475

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=2.3e-13  Score=106.27  Aligned_cols=99  Identities=22%  Similarity=0.347  Sum_probs=74.0

Q ss_pred             CCCCEEEEEEEEEEECCC--CCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEEE-----CCCC
Q ss_conf             999468998525430388--887948999999499499983799999899861155317478279841222-----0698
Q 005588           15 ASNTVFKSGPLFISSKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-----REDK   87 (689)
Q Consensus        15 ~~~~V~keG~L~l~kkg~--~~k~WkkRWfVL~~~~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~~-----~~~K   87 (689)
                      ..+.|+++|||++...+.  ..+.|++|||||+++.|+||+++....         +.+.|++..+..+..     ...+
T Consensus         5 ~~~~v~k~G~L~k~~~~~~~~~~~W~~r~~vL~~~~L~~y~~~~~~~---------p~g~i~L~~~~~~~~~~~~~~~~~   75 (111)
T d1u5fa1           5 DLPFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQ---------QKGEFAIDGYDVRMNNTLRKDGKK   75 (111)
T ss_dssp             GCSSEEEEEEEEEECCCSSCSSCSEEEEEEEEETTEEEEESSTTCSS---------CSEEEECTTCEEEECTTSCSSTTG
T ss_pred             CCCCEEEEEEEEEECCCCCCCCCCCEEEEEEEECCEEEEECCCCCCC---------CCEEEEECCCEEEEECCCCCCCCC
T ss_conf             78984299999997899997767726999999899997623665557---------633897125478860453221134


Q ss_pred             CCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             5159997078888179999348578999999999998
Q 005588           88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL  124 (689)
Q Consensus        88 k~~fvI~~~~~~~r~y~LqAdseeEl~eWI~aIr~al  124 (689)
                      +++|.+...  +++.|+|+|++++|+.+|+.+|+.++
T Consensus        76 ~~~f~i~~~--~~~~~~~~a~s~~e~~~W~~ai~~~i  110 (111)
T d1u5fa1          76 DCCFEICAP--DKRIYQFTAASPKDAEEWVQQLKFIL  110 (111)
T ss_dssp             GGEEEEECT--TSCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECC--CCCEEEEECCCHHHHHHHHHHHHHHH
T ss_conf             414799815--89689998299999999999999986

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=1.1e-12  Score=101.73  Aligned_cols=98  Identities=27%  Similarity=0.426  Sum_probs=68.8

Q ss_pred             EEEEEEEEEECCCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEEEC-CCCCCEEEEEE---
Q ss_conf             89985254303888879489999994994999837999998998611553174782798412220-69851599970---
Q 005588           20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-EDKKLLTVLFP---   95 (689)
Q Consensus        20 ~keG~L~l~kkg~~~k~WkkRWfVL~~~~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~~~-~~Kk~~fvI~~---   95 (689)
                      .|+|||+  ++|...+.|++|||||+++.|+||++++...         +.+.|+|..+..+... ..+.++|.+..   
T Consensus         6 ~keG~L~--K~~~~~k~WkrR~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~v~~~~~~~~~~~~~~~~~~~   74 (127)
T d1fgya_           6 DREGWLL--KLGGRVKTWKRRWFILTDNCLYYFEYTTDKE---------PRGIIPLENLSIREVLDPRKPNCFELYNPSH   74 (127)
T ss_dssp             SEEEEEE--EECSSSCCEEEEEEEEETTEEEEESSTTCSS---------CSEEEECTTCEEEEECCSSCSSEEEEECSSS
T ss_pred             CEEEEEE--EECCCCCCCEEEEEEEECCEEEEECCCCCCC---------CCCEEECCCEEEEECCCCCCCCEEEEECCCC
T ss_conf             6599999--9789999857899999899998983678766---------6505857871999804777886389853665


Q ss_pred             ----------------CCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCC
Q ss_conf             ----------------788881799993485789999999999984077
Q 005588           96 ----------------DGRDGRAFTLKAETSEDLYEWKTALELALAQAP  128 (689)
Q Consensus        96 ----------------~~~~~r~y~LqAdseeEl~eWI~aIr~al~~sp  128 (689)
                                      .....++|+|+|+|++|+.+|+.+|+.++.+.|
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~f~a~s~~e~~~Wi~aL~~~i~~~~  123 (127)
T d1fgya_          75 KGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRDP  123 (127)
T ss_dssp             TTCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHHHCT
T ss_pred             CCCCCCCCCCCCCEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHCCCC
T ss_conf             6532111244443047607971999987999999999999999973199

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=7.5e-13  Score=102.79  Aligned_cols=96  Identities=25%  Similarity=0.421  Sum_probs=71.4

Q ss_pred             CCEEEEEEEEEEECCCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEEEC-----CCCCCEE
Q ss_conf             94689985254303888879489999994994999837999998998611553174782798412220-----6985159
Q 005588           17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-----EDKKLLT   91 (689)
Q Consensus        17 ~~V~keG~L~l~kkg~~~k~WkkRWfVL~~~~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~~~-----~~Kk~~f   91 (689)
                      ..|+|+|||+  +++...+.|++|||+|.+..|.||+++....         +.+.|++..+..+...     ....++|
T Consensus         1 s~vik~G~L~--K~~~~~~~Wkkr~fvL~~~~l~yy~~~~~~~---------~~~~i~l~~~~~~~~~~~~~~~~~~~~f   69 (103)
T d1eaza_           1 SAVIKAGYCV--KQGAVMKNWKRRYFQLDENTIGYFKSELEKE---------PLRVIPLKEVHKVQECKQSDIMMRDNLF   69 (103)
T ss_dssp             CCCSEEEEEE--EECTTTCCEEEEEEEECSSEEEEESSTTCSS---------CSEEEEGGGCCEEEECTTHHHHTCSSEE
T ss_pred             CCEEEEEEEE--EECCCCCCEEEEEEEEECCEEEEEECCCCCC---------CCEEEECCCEEEEECCCCCCCCCCCEEE
T ss_conf             9659999999--9879999905899999899989996046766---------3048973211776024554434551579


Q ss_pred             EEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             99707888817999934857899999999999840
Q 005588           92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ  126 (689)
Q Consensus        92 vI~~~~~~~r~y~LqAdseeEl~eWI~aIr~al~~  126 (689)
                      .+..   +++.|+|+|+|++|+.+|+.+|+.++..
T Consensus        70 ~i~~---~~~~~~~~a~s~~e~~~W~~aI~~ai~~  101 (103)
T d1eaza_          70 EIVT---TSRTFYVQADSPEEMHSWIKAVSGAIVA  101 (103)
T ss_dssp             EEEC---SSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             EEEE---CCEEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf             9971---9989999959999999999999999997

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: 3-phosphoinositide dependent protein kinase-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.9e-13  Score=105.62  Aligned_cols=95  Identities=14%  Similarity=0.196  Sum_probs=72.7

Q ss_pred             CCCCCEEEEEEEEEEECCCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEEECCCCCCEEEE
Q ss_conf             99994689985254303888879489999994994999837999998998611553174782798412220698515999
Q 005588           14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL   93 (689)
Q Consensus        14 ~~~~~V~keG~L~l~kkg~~~k~WkkRWfVL~~~~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~~~~~Kk~~fvI   93 (689)
                      .++..|+|+|||+  |+|.  +.|++|||||+++.|.||+++....         +-|.|+|..+..+...  .+++|.|
T Consensus        43 ~~g~~ilK~G~L~--Kr~~--~~wkkR~FvL~~~~L~YYkd~~~~~---------~kG~I~L~~~~~v~~~--~~~~F~I  107 (147)
T d1w1ha_          43 VENNLILKMGPVD--KRKG--LFARRRQLLLTEGPHLYYVDPVNKV---------LKGEIPWSQELRPEAK--NFKTFFV  107 (147)
T ss_dssp             TTTCCEEEEEEEE--ECCT--TSCEEEEEEEETTTEEEEEETTTTE---------EEEEECCCTTCEEEEE--ETTEEEE
T ss_pred             CCCCEEEEEEEEE--EECC--CCCEEEEEEECCCEEEEEECCCCCC---------CCCEEEECCCCCCCCC--CCCEEEE
T ss_conf             5897488999999--6237--8534789997188069996787665---------0326873023222335--6743899


Q ss_pred             EECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHC
Q ss_conf             7078888179999348578999999999998407
Q 005588           94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQA  127 (689)
Q Consensus        94 ~~~~~~~r~y~LqAdseeEl~eWI~aIr~al~~s  127 (689)
                      ..   ..|+|+|+|.+ .|+.+|+.+|+.++...
T Consensus       108 ~t---~~Rty~l~a~~-~d~~~Wv~aI~~v~~~~  137 (147)
T d1w1ha_         108 HT---PNRTYYLMDPS-GNAHKWCRKIQEVWRQR  137 (147)
T ss_dssp             EC---SSCEEEEECTT-SCHHHHHHHHHHHHHHH
T ss_pred             EC---CCEEEEEECCH-HHHHHHHHHHHHHHHHH
T ss_conf             63---86689998590-88999999999999998

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5.2e-13  Score=103.89  Aligned_cols=99  Identities=18%  Similarity=0.313  Sum_probs=74.6

Q ss_pred             CCEEEEEEEEEEECCCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEEEC---CCCCCEEEE
Q ss_conf             94689985254303888879489999994994999837999998998611553174782798412220---698515999
Q 005588           17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---EDKKLLTVL   93 (689)
Q Consensus        17 ~~V~keG~L~l~kkg~~~k~WkkRWfVL~~~~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~~~---~~Kk~~fvI   93 (689)
                      +.++|+|||+  +++...+.|++|||+|+++.|+||++++...         +.+.|+|..+..+...   ..+.++|.+
T Consensus         3 ~~~ikeG~L~--k~~~~~k~WkkryfvL~~~~L~~y~~~~~~~---------p~~~i~l~~~~~~~~~~~~~~~~~~f~l   71 (113)
T d1plsa_           3 PKRIREGYLV--KKGSVFNTWKPMWVVLLEDGIEFYKKKSDNS---------PKGMIPLKGSTLTSPCQDFGKRMFVFKI   71 (113)
T ss_dssp             CCCSEEEEEE--EESSSSSCCEEEEEEEETTEEEEESSTTCSS---------CSEEEESSSCCEESSCCSSCCSSSEEEE
T ss_pred             CCCEEEEEEE--EECCCCCCCEEEEEEEECCEEEEEECCCCCC---------CCEEEECCCCEEEEEECCCCCCCEEEEE
T ss_conf             9854899999--9589999955799999899998870577665---------2159998567488640136775147998


Q ss_pred             EECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCC
Q ss_conf             70788881799993485789999999999984077
Q 005588           94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQAP  128 (689)
Q Consensus        94 ~~~~~~~r~y~LqAdseeEl~eWI~aIr~al~~sp  128 (689)
                      ..  .+++.|+|+|+|.+|+.+|+.+|+.++...+
T Consensus        72 ~~--~~~~~~~~~a~s~~e~~~Wi~ai~~ai~~~~  104 (113)
T d1plsa_          72 TT--TKQQDHFFQAAFLEERDAWVRDINKAIKCIE  104 (113)
T ss_dssp             EE--TTTEEEEEECSSHHHHHHHHHHHHHHHHHHT
T ss_pred             EC--CCCEEEEEECCCHHHHHHHHHHHHHHHHHCC
T ss_conf             54--9975999987999999999999999998582

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

Probab=99.45  E-value=4.1e-13  Score=104.56  Aligned_cols=112  Identities=21%  Similarity=0.317  Sum_probs=76.7

Q ss_pred             CCCCCEEEEEEEEEEEC------CCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEEEC--C
Q ss_conf             99994689985254303------888879489999994994999837999998998611553174782798412220--6
Q 005588           14 GASNTVFKSGPLFISSK------GIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--E   85 (689)
Q Consensus        14 ~~~~~V~keG~L~l~kk------g~~~k~WkkRWfVL~~~~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~~~--~   85 (689)
                      .....+.++|||.++..      ....+.|++|||||+++.|+||+++....+.....   ....+.+..+......  .
T Consensus         3 s~~~g~~~eG~L~rk~~~~~~~kr~~~k~Wkkrw~vL~~~~L~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~   79 (123)
T d1wjma_           3 SGSSGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYH---GEVPVSLARAQGSVAFDYR   79 (123)
T ss_dssp             SCCCCCCEEEEEEEEEEEEETTEECSCCCCEEEEEEEETTEEEEESSHHHHTTTCBSS---SCCCEECTTCEEEECTTCS
T ss_pred             CCCCCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCEEEEEECCHHCCCCCCCC---CCCCCCCCCEEEEECCCCC
T ss_conf             8888881689999774535667446788871999999899999985610123333423---3243234423687543344


Q ss_pred             CCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             985159997078888179999348578999999999998407750
Q 005588           86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSA  130 (689)
Q Consensus        86 ~Kk~~fvI~~~~~~~r~y~LqAdseeEl~eWI~aIr~al~~sp~~  130 (689)
                      .++++|.+..  .+.++|+|+|++++++.+|+.+|+.++...|+.
T Consensus        80 ~~~~~f~i~~--~~~~~~~l~a~s~~e~~~Wi~aI~~a~~~~P~~  122 (123)
T d1wjma_          80 KRKHVFKLGL--QDGKEYLFQAKDEAEMSSWLRVVNAAIASGPSS  122 (123)
T ss_dssp             SCSSEEEEEC--SSSCEEEEECSSHHHHHHHHHHHHHHHHHCCCC
T ss_pred             CCCCEEEEEC--CCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             3672899985--999599997799999999999999998618989

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.5e-13  Score=107.54  Aligned_cols=97  Identities=20%  Similarity=0.274  Sum_probs=69.5

Q ss_pred             CCCEEEEEEEEEEEC-CCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEEEECCEECCCCCCE-EECCCCCCEEEE
Q ss_conf             994689985254303-888879489999994994999837999998998611553174782798412-220698515999
Q 005588           16 SNTVFKSGPLFISSK-GIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV-VVREDKKLLTVL   93 (689)
Q Consensus        16 ~~~V~keG~L~l~kk-g~~~k~WkkRWfVL~~~~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv-~~~~~Kk~~fvI   93 (689)
                      .+.+.|+|||++..+ |...+.|++|||||+++.|+||+.... .         +.+.++|..+... .....+++||.|
T Consensus         2 ~~~~~k~G~L~k~~~~g~~~k~W~kRwfvL~~~~L~y~~~~~~-~---------~~~~i~l~~~~v~~~~~~~~~~~f~i   71 (101)
T d2elba2           2 RNLTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQARGDV-A---------GGLAMDIDNCSVMAVDCEDRRYCFQI   71 (101)
T ss_dssp             CCCSCCEEEEEECSCCC----CCCEEEEEEETTEEEEECTTCC-C---------E----EEEECCCCCCCCCCSSSSSEE
T ss_pred             CCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCEEEEECCCCC-C---------CCEEEEECCCCCCCCCCCCCCCEEEE
T ss_conf             9876486898875338998665279999995997987816875-5---------52289861431212124677614788


Q ss_pred             EECCCCCCEEEEEECCHHHHHHHHHHHHHH
Q ss_conf             707888817999934857899999999999
Q 005588           94 FPDGRDGRAFTLKAETSEDLYEWKTALELA  123 (689)
Q Consensus        94 ~~~~~~~r~y~LqAdseeEl~eWI~aIr~a  123 (689)
                      .... ..++|+|+|++++|+.+|+.||+++
T Consensus        72 ~~~~-~~~~~~l~A~s~~e~~~Wi~al~~v  100 (101)
T d2elba2          72 TSFD-GKKSSILQAESKKDHEEWICTINNI  100 (101)
T ss_dssp             CCCS-SSCCCCEECSSHHHHHHHHHHHHHT
T ss_pred             EEEC-CCCEEEEECCCHHHHHHHHHHHHHC
T ss_conf             7530-4403899779999999999999850

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.40  E-value=1.5e-12  Score=100.81  Aligned_cols=99  Identities=20%  Similarity=0.336  Sum_probs=69.1

Q ss_pred             CCCCCEEEEEEEEEEECCC-CCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEEE-CCCCCCEE
Q ss_conf             9999468998525430388-887948999999499499983799999899861155317478279841222-06985159
Q 005588           14 GASNTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLT   91 (689)
Q Consensus        14 ~~~~~V~keG~L~l~kkg~-~~k~WkkRWfVL~~~~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~~-~~~Kk~~f   91 (689)
                      ..+..++++|||+  |+|. ..+.|++|||||+++.|+||+++....           +.|.+..+..+.. ....+++|
T Consensus         5 ~~~~~~i~eG~L~--K~g~~~~~~WkkR~fvL~~~~L~yy~~~~~~~-----------~~i~l~~~~~v~~~~~~~~~~f   71 (119)
T d1omwa2           5 ALGKDCIMHGYMS--KMGNPFLTQWQRRYFYLFPNRLEWRGEGEAPQ-----------SLLTMEEIQSVEETQIKERKCL   71 (119)
T ss_dssp             TTTSCCCEEEEEE--ECC------CEEEEEEEETTEEEEECTTSCCC-----------EEEEGGGEEEEEEEESSSCEEE
T ss_pred             CCCCCEEEEEEEE--EECCCCCCCEEEEEEEEECCEEEEEECCCCCC-----------CCCEECCCCCCCCCCCCCCCEE
T ss_conf             5679827999999--87899888727889999818278981233457-----------6410103200222244455159


Q ss_pred             EEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHC
Q ss_conf             997078888179999348578999999999998407
Q 005588           92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA  127 (689)
Q Consensus        92 vI~~~~~~~r~y~LqAdseeEl~eWI~aIr~al~~s  127 (689)
                      .+..  ..+++|+|+|+|++|+.+|+.+|+.++..+
T Consensus        72 ~i~~--~~~~~~~f~a~s~~e~~~W~~al~~a~~~~  105 (119)
T d1omwa2          72 LLKI--RGGKQFVLQCDSDPELVQWKKELRDAYREA  105 (119)
T ss_dssp             EEEE--TTSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             EEEC--CCCCEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf             9975--898289997899899989999999999999

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.9e-12  Score=97.85  Aligned_cols=94  Identities=28%  Similarity=0.445  Sum_probs=62.6

Q ss_pred             CEEEEEEEEEEECCCCCCCCEEEEEEEECC--EEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEEEC-------CCCC
Q ss_conf             468998525430388887948999999499--4999837999998998611553174782798412220-------6985
Q 005588           18 TVFKSGPLFISSKGIGWKSWKKRWFILTRT--SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-------EDKK   88 (689)
Q Consensus        18 ~V~keG~L~l~kkg~~~k~WkkRWfVL~~~--~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~~~-------~~Kk   88 (689)
                      -|+|+|||+  +++...+.|++|||+|.++  .++||+.+....         +.+.|.+..+..+...       ....
T Consensus         1 vv~k~G~L~--k~~~~~k~WkkR~fvL~~~~~~l~~~~~~~~~~---------~~~~i~~~~~~~~~~~~~~~~~~~~~~   69 (104)
T d2i5fa1           1 VIIKQGCLL--KQGHRRKNWKVRKFILREDPAYLHYYDPAGAED---------PLGAIHLRGCVVTSVESNSNGRKSEEE   69 (104)
T ss_dssp             CEEEEEEEE--EECTTTCCEEEEEEEEETTTTEEEEECTTSCSS---------CSEEEECTTCEEEEECC--------CC
T ss_pred             CEEEEEEEE--EECCCCCCCEEEEEEEECCEEEEEEECCCCCCC---------CCCEEEECCEEEEEECCCCCCCCCCCC
T ss_conf             999999999--977999983889999978810999976756667---------642075033179995267654445676


Q ss_pred             CEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             159997078888179999348578999999999998
Q 005588           89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL  124 (689)
Q Consensus        89 ~~fvI~~~~~~~r~y~LqAdseeEl~eWI~aIr~al  124 (689)
                      ++|.+.  ..+.+.|+|+|+|++|+.+|+.+|+.++
T Consensus        70 ~~~~~~--~~~~~~~~~~a~s~~e~~~W~~ai~~a~  103 (104)
T d2i5fa1          70 NLFEII--TADEVHYFLQAATPKERTEWIKAIQMAS  103 (104)
T ss_dssp             SEEEEE--CTTCCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEE--CCCCEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf             479998--7998499998699999999999999976

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.2e-12  Score=101.45  Aligned_cols=93  Identities=25%  Similarity=0.364  Sum_probs=67.9

Q ss_pred             CEEEEEEEEEEECCCCCCCCEEEEEEEECC-------EEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEEEC--CCCC
Q ss_conf             468998525430388887948999999499-------4999837999998998611553174782798412220--6985
Q 005588           18 TVFKSGPLFISSKGIGWKSWKKRWFILTRT-------SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--EDKK   88 (689)
Q Consensus        18 ~V~keG~L~l~kkg~~~k~WkkRWfVL~~~-------~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~~~--~~Kk   88 (689)
                      .|.|+|||+  ++    +.|++|||+|++.       .|.||+++....+....    +.+.|++..+..+...  ...+
T Consensus         1 dv~k~GyL~--K~----k~WkkR~fvL~~~~~~~~~~~L~yy~~~~~~~~~~~~----~~~~i~l~~~~~~~~~~~~~~~   70 (103)
T d1qqga1           1 DVRKVGYLR--KP----KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSA----PKRSIPLESCFNINKRADSKNK   70 (103)
T ss_dssp             CEEEEEEEE--CT----TTCCEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSC----CSEEEEGGGEEEEEEECCSSCS
T ss_pred             CCCEEEEEE--EC----CCCCEEEEEEECCCCCCCCCEEEEECCHHHHHCCCCC----CCCEEECCEEEEEEECCCCCCC
T ss_conf             955667998--73----8997899999466346874188887365353024641----2656860204478611457874


Q ss_pred             CEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHH
Q ss_conf             15999707888817999934857899999999999
Q 005588           89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA  123 (689)
Q Consensus        89 ~~fvI~~~~~~~r~y~LqAdseeEl~eWI~aIr~a  123 (689)
                      ++|.+...   .++|+|+|+|++|+.+|+.+|+.+
T Consensus        71 ~~f~i~t~---~r~~~l~A~s~~e~~~Wi~al~~l  102 (103)
T d1qqga1          71 HLVALYTR---DEHFAIAADSEAEQDSWYQALLQL  102 (103)
T ss_dssp             SEEEEEES---SCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             EEEEEEEC---CEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             69999719---969999949999999999999852

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.3e-12  Score=99.45  Aligned_cols=91  Identities=21%  Similarity=0.247  Sum_probs=65.7

Q ss_pred             EEEEEEEEEECCCCCCCCEEEEEEEECC---EEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEEE----CCCCCCEEE
Q ss_conf             8998525430388887948999999499---499983799999899861155317478279841222----069851599
Q 005588           20 FKSGPLFISSKGIGWKSWKKRWFILTRT---SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV----REDKKLLTV   92 (689)
Q Consensus        20 ~keG~L~l~kkg~~~k~WkkRWfVL~~~---~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~~----~~~Kk~~fv   92 (689)
                      +..|||++..+   .+.|++|||||+++   .|+||+++.+..         +.+.|++..+..+..    ...+.++|.
T Consensus         2 ~~~G~L~~~~~---~k~W~krwfvL~~~~~~~ly~~~~~~~~~---------~~~~i~l~~~~~~~~~~~~~~~~~~~F~   69 (99)
T d2coca1           2 LLCGPLRLSES---GETWSEVWAAIPMSDPQVLHLQGGSQDGR---------LPRTIPLPSCKLSVPDPEERLDSGHVWK   69 (99)
T ss_dssp             SSEEEEEEESS---SSCEEEEEEECCTTCTTCEEEECCTTCSS---------SCSEECGGGCEEECCCSSSCCSSSEEEE
T ss_pred             CEEEEEECCCC---CCCCCEEEEEEECCCCCEEEEECCCCCCC---------CCCCCCCCCEEEEECCCCCCCCCCEEEE
T ss_conf             56798881279---99964889999568740999987676535---------5445223663564012344567863999


Q ss_pred             EEECCCCCCEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf             970788881799993485789999999999984
Q 005588           93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALA  125 (689)
Q Consensus        93 I~~~~~~~r~y~LqAdseeEl~eWI~aIr~al~  125 (689)
                      +..   .+++|+|+|++++|+.+|+.+|+.+++
T Consensus        70 i~~---~~r~~~l~A~s~~e~~~Wi~aL~~Aa~   99 (99)
T d2coca1          70 LQW---AKQSWYLSASSAELQQQWLETLSTAAH   99 (99)
T ss_dssp             EEE---TTEEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred             EEC---CCCEEEEECCCHHHHHHHHHHHHHHCC
T ss_conf             871---994899988999999999999998619

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.4e-12  Score=98.29  Aligned_cols=98  Identities=24%  Similarity=0.415  Sum_probs=63.4

Q ss_pred             CCCCCEEEEEEEEEEECCCCCCCCEEEEEEEECCE--EEEECCCCCCCCCCCCEEEEEECCEECCCCCCEEEC-------
Q ss_conf             99994689985254303888879489999994994--999837999998998611553174782798412220-------
Q 005588           14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTS--LVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-------   84 (689)
Q Consensus        14 ~~~~~V~keG~L~l~kkg~~~k~WkkRWfVL~~~~--L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~~~-------   84 (689)
                      ..+..++|+|||+  ++|...+.|++|||+|++..  ++||..+.... .       +.+.|+|..+..+...       
T Consensus         6 ~~~~~v~k~G~L~--K~~~~~k~WkkR~fvL~~~~~~~~~~~~~~~~~-~-------p~~~i~L~~~~i~~~~~~~~~~~   75 (116)
T d1x1ga1           6 ELSGTVVKQGYLA--KQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEEN-R-------PVGGFSLRGSLVSALEDNGVPTG   75 (116)
T ss_dssp             TTCSEEEEEEEEE--EECSSSSSEEEEEEEEEESSCEEEEECSSSCCS-S-------CSCCEESTTCCCEECCSSSSCSS
T ss_pred             CCCCCEEEEEEEE--EECCCCCCCCEEEEEEECCCCEEEEECCCCCCC-C-------CEEEEECCCCEEEEECCCCCCCC
T ss_conf             4899899999999--984899997358999988975899962643555-6-------40289858879998515675531


Q ss_pred             ---CCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHH
Q ss_conf             ---698515999707888817999934857899999999999
Q 005588           85 ---EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA  123 (689)
Q Consensus        85 ---~~Kk~~fvI~~~~~~~r~y~LqAdseeEl~eWI~aIr~a  123 (689)
                         ..+.++|.+..  .+.+.|+|+|++++|+.+|+.||+++
T Consensus        76 ~~~~~~~~~f~i~~--~~~~~~~f~a~s~ee~~~Wi~ai~~~  115 (116)
T d1x1ga1          76 VKGNVQGNLFKVIT--KDDTHYYIQASSKAERAEWIEAIKKL  115 (116)
T ss_dssp             CSSCCCSSCEEECC--TTCCCEEECCSSHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCEEEEEE--CCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             02356651368992--79809999899999999999999964

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.34  E-value=1.2e-12  Score=101.37  Aligned_cols=107  Identities=17%  Similarity=0.216  Sum_probs=69.9

Q ss_pred             CCEEEEEEEEEEEC------CCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEEEC--CCCC
Q ss_conf             94689985254303------888879489999994994999837999998998611553174782798412220--6985
Q 005588           17 NTVFKSGPLFISSK------GIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--EDKK   88 (689)
Q Consensus        17 ~~V~keG~L~l~kk------g~~~k~WkkRWfVL~~~~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~~~--~~Kk   88 (689)
                      ....+||||+++..      ....+.|++|||||+++.|+||+++....+.... .......+.+..+......  ..+.
T Consensus         6 ~~~~~eG~L~rk~~~~~~~kk~~~~~W~kr~~vL~~~~L~yy~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~   84 (122)
T d1droa_           6 AGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPEL-TFRGEPSYDLQNAAIEIASDYTKKK   84 (122)
T ss_dssp             SSSSEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSSCCBEESSSSHHHHCTTC-CSSCCCBCCCSSCCCEECCSSSSST
T ss_pred             CCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCC-CCCCCCEEECCCEEEEECCCCCCCC
T ss_conf             975258889974014566756689985289999969989998474323446751-0033305751533898655456666


Q ss_pred             CEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             15999707888817999934857899999999999840
Q 005588           89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ  126 (689)
Q Consensus        89 ~~fvI~~~~~~~r~y~LqAdseeEl~eWI~aIr~al~~  126 (689)
                      ++|.+..  .+.++|+|+|++++|+++|+.+|+.++..
T Consensus        85 ~~~~l~~--~~~~~~~f~a~s~~d~~~Wv~al~~~~~~  120 (122)
T d1droa_          85 HVLRVKL--ANGALFLLQAHDDTEMSQWVTSLKAQSDS  120 (122)
T ss_dssp             TEEEEEC--SSSCEEEEECSSSHHHHHHHHHHHHHHTC
T ss_pred             CEEEEEC--CCCCEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf             0698887--99849999889999999999999998762

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

Probab=99.28  E-value=4.7e-12  Score=97.32  Aligned_cols=98  Identities=21%  Similarity=0.302  Sum_probs=67.0

Q ss_pred             EEEEEEEEE------CCCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEEECC--CCCCEEE
Q ss_conf             998525430------38888794899999949949998379999989986115531747827984122206--9851599
Q 005588           21 KSGPLFISS------KGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE--DKKLLTV   92 (689)
Q Consensus        21 keG~L~l~k------kg~~~k~WkkRWfVL~~~~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~~~~--~Kk~~fv   92 (689)
                      +||||+.+.      +....+.|++|||+|+++.|+||+++....+....   .+.+.+++..+..+....  .++++|.
T Consensus         1 ~eG~L~rk~~~~~~~kk~~~~~Wk~r~~vL~~~~L~~yk~~~~~~~~~~~---~~~~~i~l~~~~~~~~~~~~~~~~~f~   77 (106)
T d1btna_           1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPY---HSEVPVSLKEAICEVALDYKKKKHVFK   77 (106)
T ss_dssp             CEEEEEEEEEECSTTCBCSCCCCEEEEEEEETTEEEEESSHHHHHHTCCS---SSCCCEECTTCEEEECSSCCSSSSEEE
T ss_pred             CEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCEEEEEECHHHCCCCCCC---CCCEEEEECCCEEEECCCCCCCCCEEE
T ss_conf             92459875484677733578998199999989999999572560446665---742158711534664221346765075


Q ss_pred             EEECCCCCCEEEEEECCHHHHHHHHHHHHHH
Q ss_conf             9707888817999934857899999999999
Q 005588           93 LFPDGRDGRAFTLKAETSEDLYEWKTALELA  123 (689)
Q Consensus        93 I~~~~~~~r~y~LqAdseeEl~eWI~aIr~a  123 (689)
                      +...  ++++|+|+|++++|+.+|+.+|+.|
T Consensus        78 i~~~--~~~~~~~~a~s~~e~~~W~~ai~~A  106 (106)
T d1btna_          78 LRLS--DGNEYLFQAKDDEEMNTWIQAISSA  106 (106)
T ss_dssp             EECT--TSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred             ECCC--CCCEEEEECCCHHHHHHHHHHHHHC
T ss_conf             0026--8879999889999999999999859

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.5e-11  Score=92.33  Aligned_cols=90  Identities=19%  Similarity=0.254  Sum_probs=63.6

Q ss_pred             EEEEEEEEECCCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEEEC-CCCCCEEEEEECCCC
Q ss_conf             9985254303888879489999994994999837999998998611553174782798412220-698515999707888
Q 005588           21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-EDKKLLTVLFPDGRD   99 (689)
Q Consensus        21 keG~L~l~kkg~~~k~WkkRWfVL~~~~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~~~-~~Kk~~fvI~~~~~~   99 (689)
                      ++|||.+..    ...|++|||+|+++.|+||+++....+        +.+.+++..+..+... ..++++|.+..  ++
T Consensus         3 ~s~yl~~~~----~~~WkkR~fvL~~~~L~yyk~~~~~~~--------~~~~i~l~~~~v~~~~~~~~~~~f~~~~--~~   68 (95)
T d2cofa1           3 TSSYLNVLV----NSQWKSRWCSVRDNHLHFYQDRNRSKV--------AQQPLSLVGCEVVPDPSPDHLYSFRILH--KG   68 (95)
T ss_dssp             TCCEEEEEE----TTEEEEEEEEECSSCEEEECSSTTCSE--------EEEEECTTTCEEECCCBTTBSCEEEEEE--TT
T ss_pred             CCCCHHHHC----CCCCEEEEEEEECCEEEEEECCCCCCC--------CCCCCCCCCEEEEECCCCCCEECCEECC--CC
T ss_conf             332101005----999307999998999989805556633--------3230123433997301343100001023--33


Q ss_pred             CCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             8179999348578999999999998
Q 005588          100 GRAFTLKAETSEDLYEWKTALELAL  124 (689)
Q Consensus       100 ~r~y~LqAdseeEl~eWI~aIr~al  124 (689)
                      .++|+|+|++++|+++||.+|+.+.
T Consensus        69 ~~~~~l~A~s~~e~~~Wi~~L~~~t   93 (95)
T d2cofa1          69 EELAKLEAKSSEEMGHWLGLLLSES   93 (95)
T ss_dssp             EEEEEEECSSHHHHHHHHHHHHHHS
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf             2268960799999999999999986

>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac/CDC42 GEF 6, alpha-pix
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.66  E-value=1.4e-07  Score=66.67  Aligned_cols=108  Identities=14%  Similarity=0.156  Sum_probs=71.9

Q ss_pred             CCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEE--ECCCCCC
Q ss_conf             99999946899852543038888794899999949949998379999989986115531747827984122--2069851
Q 005588           12 RPGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV--VREDKKL   89 (689)
Q Consensus        12 ~~~~~~~V~keG~L~l~kkg~~~k~WkkRWfVL~~~~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~--~~~~Kk~   89 (689)
                      ....-..++++|++.  ......+.|+.|||+|-...|+|+|...... ...     .-+.|++..+....  .....++
T Consensus        21 ~l~~~G~li~~g~~~--~~~~~~~~~k~R~~fLF~~~Ll~~k~~~~~~-~~~-----~k~~i~l~~~~v~~~~~~~~~~~   92 (132)
T d1v61a_          21 DIKTLGNVIFMSQVV--MQHGACEEKEERYFLLFSSVLIMLSASPRMS-GFM-----YQGKIPIAGMVVNRLDEIEGSDC   92 (132)
T ss_dssp             CSTTTCCCSCEEEEE--BCCSSSSCCCEEEEEECSSCEEEEECSSSSS-CCE-----EEEEECTTTCBCSTTCSSSSSCC
T ss_pred             CHHHCCCEEEEEEEE--EEEECCCCCCEEEEEEECCEEEEEEECCCCC-EEE-----EEEECCHHHCCCCCCCCCCCCCC
T ss_conf             842156789997789--9981388742389999699899999847886-067-----73002253263012445657652


Q ss_pred             EEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             5999707888817999934857899999999999840775
Q 005588           90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS  129 (689)
Q Consensus        90 ~fvI~~~~~~~r~y~LqAdseeEl~eWI~aIr~al~~sp~  129 (689)
                      +|.+..  +..+.|+|+|.|++|+.+|+.+|++++...|+
T Consensus        93 ~f~i~~--~~~~~~~l~a~s~eek~~Wv~~L~~~i~~~~~  130 (132)
T d1v61a_          93 MFEITG--STVERIVVHCNNNQDFQEWMEQLNRLTKSGPS  130 (132)
T ss_dssp             CEEEEC--SSSCEEEECCCCSHHHHHHHHHHHHHHTTSCS
T ss_pred             EEEEEC--CCCCEEEEECCCHHHHHHHHHHHHHHHHCCCC
T ss_conf             399827--99877999829999999999999999961899

>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.37  E-value=1.1e-05  Score=53.74  Aligned_cols=109  Identities=13%  Similarity=0.056  Sum_probs=66.4

Q ss_pred             CCCCEEEEEEEEEEECCCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEEECC---CCCCEE
Q ss_conf             99946899852543038888794899999949949998379999989986115531747827984122206---985159
Q 005588           15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE---DKKLLT   91 (689)
Q Consensus        15 ~~~~V~keG~L~l~kkg~~~k~WkkRWfVL~~~~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~~~~---~Kk~~f   91 (689)
                      +....+++|+|+.  .+...+.|+.|||+|-...|+|+|......+.....-.+.+..+.+..........   .-+++|
T Consensus        23 ~~r~Li~eG~L~~--~~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~y~~k~~i~L~~~~v~~~~~~~~~~~~~~~~~~f  100 (162)
T d2dfka2          23 RSSELIYTGEMAW--IYQPYGRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAF  100 (162)
T ss_dssp             TCCCEEEEEEEEE--ESSTTCCCEEEEEEEETTEEEEEEECSSCTTCEEEEEEEEGGGEEEEECCSEECSSSCCEESSEE
T ss_pred             CCCEEEEEEEEEE--EECCCCCCEEEEEEEECCEEEEEEECCCCCCCEEECCCCCHHHCEEEECCCCCCCCCCCCCCCEE
T ss_conf             3865999989999--97689971468999947969999863778881687540012110356202444545675434217


Q ss_pred             EEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             99707888817999934857899999999999840
Q 005588           92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ  126 (689)
Q Consensus        92 vI~~~~~~~r~y~LqAdseeEl~eWI~aIr~al~~  126 (689)
                      .+.... .++.|.|+|.|++|...|+.+|+.+...
T Consensus       101 ~i~~~~-~~~~~~~~A~s~~eK~~W~~~l~~~~~~  134 (162)
T d2dfka2         101 KLHNKE-TEEVHLFFAKKLEEKIRWLRAFREERKM  134 (162)
T ss_dssp             EEEESS-SSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             EEEECC-CCEEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf             999889-9819999959999999999999999999

>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Son of sevenless-1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=0.00016  Score=45.83  Aligned_cols=104  Identities=13%  Similarity=0.105  Sum_probs=64.3

Q ss_pred             CCCCEEEEEEEEEEECCCCCCCCEEEEEEEECCEEEEECCCCCCCCCC--CCEEEEEECCEECCCCCCEEECCC--CCCE
Q ss_conf             999468998525430388887948999999499499983799999899--861155317478279841222069--8515
Q 005588           15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQR--GGEVNLTLGGIDLNNSGSVVVRED--KKLL   90 (689)
Q Consensus        15 ~~~~V~keG~L~l~kkg~~~k~WkkRWfVL~~~~L~yyKd~~~~~p~~--~~~~~~~L~~I~L~~~~sv~~~~~--Kk~~   90 (689)
                      ++...+++|.|.  +.+..    +.||+.|=...|+|.|-.....+..  .+.....-+.|++..+........  .+++
T Consensus        23 ~gr~li~eG~l~--~~~~~----k~r~~fLF~d~Li~~k~~~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~~~~~~~~~~   96 (133)
T d1dbha2          23 CCNEFIMEGTLT--RVGAK----HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDTNEYKHA   96 (133)
T ss_dssp             TCCCEEEEEEEE--ETTCS----SCEEEEEESSEEEEEEECTTCCCCTTSCCCSEEEEEEEESCSCEEEECCCSSSCCSE
T ss_pred             CCCEEEEEEEEE--EECCC----CEEEEEEECCEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf             685899996899--95289----707999924848999831445533567885089972445000123336788656331


Q ss_pred             EEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             999707888817999934857899999999999840
Q 005588           91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ  126 (689)
Q Consensus        91 fvI~~~~~~~r~y~LqAdseeEl~eWI~aIr~al~~  126 (689)
                      |.+.  ..+.+.|.|+|.|++|..+|+++|+.+..+
T Consensus        97 f~i~--~~~~~~~~l~a~s~~eK~~W~~~l~~~~~r  130 (133)
T d1dbha2          97 FEII--LKDENSVIFSAKSAEEKNNWMAALISLQYR  130 (133)
T ss_dssp             EEEC--CTTSCCEEEECSSHHHHHHHHHHHHHHHTT
T ss_pred             EEEE--CCCCCEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf             2687--189858999979999999999999998765

>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Triple functional domain protein TRIO
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=0.00036  Score=43.36  Aligned_cols=108  Identities=16%  Similarity=0.157  Sum_probs=68.7

Q ss_pred             CCCEEEEEEEEEEECCCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEEECCCCCCEEEEEE
Q ss_conf             99468998525430388887948999999499499983799999899861155317478279841222069851599970
Q 005588           16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP   95 (689)
Q Consensus        16 ~~~V~keG~L~l~kkg~~~k~WkkRWfVL~~~~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~~~~~Kk~~fvI~~   95 (689)
                      ....+++|.|.+.......+.++.||+.|=...|+|-|-.....   +.........+.+.........++..+.|.+..
T Consensus        10 ~G~Ll~~g~l~v~~~~~~~~k~~~R~~FLF~d~Ll~~K~k~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~   86 (121)
T d1ntya2          10 QGELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSS---GRSKYLYKSKLFTSELGVTEHVEGDPCKFALWV   86 (121)
T ss_dssp             GCCEEEEEEEEEECSSSSSCCEEEEEEEEESSEEEEEEEEECTT---CCEEEEEEEEEEGGGEEEECCCTTCTTEEEEEE
T ss_pred             CCCEEEEEEEEEECCCCCCCCCCEEEEEEECCEEEEEEEECCCC---CCCEEEEEEEEEECCEEEEECCCCCCCEEEEEE
T ss_conf             88079983779971633478984799996489099999842788---873267874598503698985799985089999


Q ss_pred             CC--CCCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             78--88817999934857899999999999840
Q 005588           96 DG--RDGRAFTLKAETSEDLYEWKTALELALAQ  126 (689)
Q Consensus        96 ~~--~~~r~y~LqAdseeEl~eWI~aIr~al~~  126 (689)
                      ..  .....|.|+|.|+++...|+.+|+.++..
T Consensus        87 ~~~~~~~~~~~l~a~s~~eK~~W~~~I~~~i~e  119 (121)
T d1ntya2          87 GRTPTSDNKIVLKASSIENKQDWIKHIREVIQE  119 (121)
T ss_dssp             SSSCCTTTCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf             247998369999979999999999999999986

>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Exocyst complex protein EXO84
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.63  E-value=0.00067  Score=41.50  Aligned_cols=102  Identities=16%  Similarity=0.035  Sum_probs=64.3

Q ss_pred             CCEEEEEEEEEEECCCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEEEC--CCCCCEEEEE
Q ss_conf             94689985254303888879489999994994999837999998998611553174782798412220--6985159997
Q 005588           17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--EDKKLLTVLF   94 (689)
Q Consensus        17 ~~V~keG~L~l~kkg~~~k~WkkRWfVL~~~~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~~~--~~Kk~~fvI~   94 (689)
                      ...+++|.|-....+ ..+.=++||+.|=...|.+.+-......    .. .....+++..+..+...  ...+++|.+.
T Consensus         2 R~li~eG~l~~~~~~-~~k~~~~~~~fLF~d~Ll~~k~~~~~~~----~~-~~~~~~~l~~~~v~~~~d~~~~~n~f~i~   75 (109)
T d1zc3b1           2 QYLVYNGDLVEYEAD-HMAQLQRVHGFLMNDCLLVATWLPQRRG----MY-RYNALYPLDRLAVVNVKDNPPMKDMFKLL   75 (109)
T ss_dssp             CCEEEEEEEEEEETT-TCCEEEEEEEEEESSEEEEEEEECCTTS----CE-EEEEEEETTTCEEEEECCBTTBSSEEEEE
T ss_pred             CEEEEEEEEEEECCC-CCCCCEEEEEEEECCEEEEEEECCCCCE----EE-EEEEEEECCCEEEEEEECCCCCCEEEEEC
T ss_conf             799993269999067-7985406999985488999998377651----78-73039841425999851466633379991


Q ss_pred             ECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHC
Q ss_conf             078888179999348578999999999998407
Q 005588           95 PDGRDGRAFTLKAETSEDLYEWKTALELALAQA  127 (689)
Q Consensus        95 ~~~~~~r~y~LqAdseeEl~eWI~aIr~al~~s  127 (689)
                      ..   .+.|+|+|+|++|..+|+.+|+.++...
T Consensus        76 ~~---~~~~~~~a~s~~eK~~W~~~l~~a~~~~  105 (109)
T d1zc3b1          76 MF---PESRIFQAENAKIKREWLEVLEETKRAL  105 (109)
T ss_dssp             ET---TEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             CC---CCEEEEEECCHHHHHHHHHHHHHHHHHH
T ss_conf             69---9789999899999999999999999999

>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C delta-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.60  E-value=0.00058  Score=41.94  Aligned_cols=95  Identities=13%  Similarity=0.231  Sum_probs=55.8

Q ss_pred             EEEEEEEEEECCCCCCCC-EEEEEEEEC-CEEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEEEC------------C
Q ss_conf             899852543038888794-899999949-94999837999998998611553174782798412220------------6
Q 005588           20 FKSGPLFISSKGIGWKSW-KKRWFILTR-TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR------------E   85 (689)
Q Consensus        20 ~keG~L~l~kkg~~~k~W-kkRWfVL~~-~~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~~~------------~   85 (689)
                      +++|...++-+   .+.| ++|||.|.. ..++||++.........       +.|++..+..|...            .
T Consensus        11 l~~G~~l~K~~---~~~~~k~R~f~L~~d~~~i~~~~~~~~~~~~~-------~~i~i~~I~~V~~G~~s~~~~~~~~~~   80 (119)
T d1maia_          11 LLKGSQLLKVK---SSSWRRERFYKLQEDCKTIWQESRKVMRSPES-------QLFSIEDIQEVRMGHRTEGLEKFARDI   80 (119)
T ss_dssp             HHHCEEEEEES---SSSCEEEEEEEECTTSSEEEECCCCTTCCTTT-------TEEEGGGEEEEEESSCSHHHHHHCTTS
T ss_pred             HHCCCEEEEEC---CCCCCEEEEEEECCCCCEEEEECCCCCCCCCC-------EEEEHHHCEEEECCCCCCHHHHCCCCC
T ss_conf             97588289867---89997899999938989999927987777654-------189878826787688880132035678


Q ss_pred             CCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf             9851599970788881799993485789999999999984
Q 005588           86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA  125 (689)
Q Consensus        86 ~Kk~~fvI~~~~~~~r~y~LqAdseeEl~eWI~aIr~al~  125 (689)
                      ....||.|... ...+++.|.|++++++..|+.+|+..++
T Consensus        81 ~~~~~FsIv~~-~~~r~l~l~a~s~~~~~~Wv~~L~~L~~  119 (119)
T d1maia_          81 PEDRCFSIVFK-DQRNTLDLIAPSPADAQHWVQGLRKIIH  119 (119)
T ss_dssp             CGGGEEEEEES-SSCCCEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             CCCCEEEEEEC-CCCCEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf             85726999995-8983799998999999999999999849

>d1xcga2 b.55.1.1 (A:942-1081) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.00098  Score=40.38  Aligned_cols=110  Identities=20%  Similarity=0.207  Sum_probs=63.1

Q ss_pred             CCCCEEEEEEEEEEECCCCCCCCEEEEEEEECCEEEEECCCCCCCCCC--------CCEEE-EEECCEECCCCCCEEECC
Q ss_conf             999468998525430388887948999999499499983799999899--------86115-531747827984122206
Q 005588           15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQR--------GGEVN-LTLGGIDLNNSGSVVVRE   85 (689)
Q Consensus        15 ~~~~V~keG~L~l~kkg~~~k~WkkRWfVL~~~~L~yyKd~~~~~p~~--------~~~~~-~~L~~I~L~~~~sv~~~~   85 (689)
                      +....+++|.|.++.   ..+..+.|||.|=...|+|-|......-..        ..... .....+.+.....-....
T Consensus        21 ~~R~Li~eG~L~~k~---~~~k~k~r~~FLF~D~Ll~tk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   97 (140)
T d1xcga2          21 TTRKMIHEGPLTWRI---SKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVAT   97 (140)
T ss_dssp             GGSCEEEEEEEEECC---SSSCCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEECSS
T ss_pred             CCCEEEEEEEEEEEE---CCCCCEEEEEEEECCEEEEEEECCCCEEECCCCCCCCCCCCCEEEECCEEECCEEEEECCCC
T ss_conf             664599984689993---48984479999835869999962562252246532124553115663507624379842788


Q ss_pred             CCCCEEEEEE-CCCCCCEEEEEECCHHHHHHHHHHHHHHHHHC
Q ss_conf             9851599970-78888179999348578999999999998407
Q 005588           86 DKKLLTVLFP-DGRDGRAFTLKAETSEDLYEWKTALELALAQA  127 (689)
Q Consensus        86 ~Kk~~fvI~~-~~~~~r~y~LqAdseeEl~eWI~aIr~al~~s  127 (689)
                      +.+.++++.. .......|+|+|.|++|..+|+.+|+.++.+|
T Consensus        98 ~~~~f~li~~~~~~~~~~~~l~A~s~~eK~~Wi~~i~~aI~nA  140 (140)
T d1xcga2          98 DKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRNA  140 (140)
T ss_dssp             CSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCC
T ss_conf             9985999975789996699999299999999999999999739

>d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 12
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

Probab=97.29  E-value=0.0021  Score=38.06  Aligned_cols=103  Identities=18%  Similarity=0.188  Sum_probs=59.1

Q ss_pred             EEEEEEEEEECCCCCCCCEEEEEEEECCEEEEECCCCCCC-------CCCCC-EEE-EEECCEECCCCCCEEECCCCCCE
Q ss_conf             8998525430388887948999999499499983799999-------89986-115-53174782798412220698515
Q 005588           20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSAL-------PQRGG-EVN-LTLGGIDLNNSGSVVVREDKKLL   90 (689)
Q Consensus        20 ~keG~L~l~kkg~~~k~WkkRWfVL~~~~L~yyKd~~~~~-------p~~~~-~~~-~~L~~I~L~~~~sv~~~~~Kk~~   90 (689)
                      +++|.|.+.. +  .+.-+.|++.|=...|.|-|......       +..+. ... ..-..|.+..........+.+.+
T Consensus         2 i~eG~L~~~~-~--~~k~~er~vFLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~l~v~e~~~d~~~~   78 (114)
T d1txda2           2 IHEGPLVWKV-N--RDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIKLSTVLVRQVATDNKAL   78 (114)
T ss_dssp             EEEEEEEEES-S--SSCBCCEEEEEESSEEEEEEEETTEEECCC-------------CCCSEEEGGGEEEEECCC-CCEE
T ss_pred             CEEEEEEEEE-C--CCCCEEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCEECCCEEEEECCCCCCCE
T ss_conf             4332189996-3--898347999984375999970346630056664445566411665472895408999868998878


Q ss_pred             EEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf             99970788881799993485789999999999984
Q 005588           91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA  125 (689)
Q Consensus        91 fvI~~~~~~~r~y~LqAdseeEl~eWI~aIr~al~  125 (689)
                      |.|.........|.|+|.|+++.+.|+.+|+++++
T Consensus        79 fli~~~~~~~~~y~l~A~s~~eK~~W~~~I~~~~~  113 (114)
T d1txda2          79 FVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAA  113 (114)
T ss_dssp             EEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHC
T ss_conf             99996588734899995998999999999999860

>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00052  Score=42.24  Aligned_cols=106  Identities=15%  Similarity=0.134  Sum_probs=60.6

Q ss_pred             CCCCEEEEEEEEEEECCCCCCCCEEEEEEEECCEEEEECCCCCCCC-------CC-CCEEEEEECCEECCCCCCEEECCC
Q ss_conf             9994689985254303888879489999994994999837999998-------99-861155317478279841222069
Q 005588           15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALP-------QR-GGEVNLTLGGIDLNNSGSVVVRED   86 (689)
Q Consensus        15 ~~~~V~keG~L~l~kkg~~~k~WkkRWfVL~~~~L~yyKd~~~~~p-------~~-~~~~~~~L~~I~L~~~~sv~~~~~   86 (689)
                      ++...+++|.|++.+.+      +.|||.|=...|.|-|-.....-       .. +......-..+.+...........
T Consensus        21 ~~R~li~eG~L~k~~~~------k~r~~FLFnD~Ll~tK~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~l~v~~~~d~   94 (142)
T d1ki1b2          21 GPRKFLHSGKLYKAKNN------KELYGFLFNDFLLLTQITKPLGSSGTDKVFSPKSNLQYMYKTPIFLNEVLVKLPTDP   94 (142)
T ss_dssp             SBCCEEEECCCBCSSSC------CCCEEEEESSEEEEEEEECC-------CCSCSSCCEEEECSSCEEGGGEEEECCSSS
T ss_pred             CCEEEEEEEEEEEECCC------CEEEEEEECCEEEEEEECCCCCEECCCCCCCCCCCEEEEEECCCCHHHHEEECCCCC
T ss_conf             87489996479995389------788999965779999861343201122234667860289871210323012515776


Q ss_pred             CCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHC
Q ss_conf             85159997078888179999348578999999999998407
Q 005588           87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA  127 (689)
Q Consensus        87 Kk~~fvI~~~~~~~r~y~LqAdseeEl~eWI~aIr~al~~s  127 (689)
                      ..+.+.+... ..++.|+|+|.|++|...|+.+|+.|+...
T Consensus        95 ~~~~~~~~~~-~~~~~~~l~a~s~~ek~~W~~~I~~Ai~~~  134 (142)
T d1ki1b2          95 SGDEPIFHIS-HIDRVYTLRAESINERTAWVQKIKAASELY  134 (142)
T ss_dssp             CCC---CEEE-ETTEEEECBCSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEC-CCCEEEEEEECCHHHHHHHHHHHHHHHHHH
T ss_conf             4420489865-799799999299999999999999999999

>d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dbl's big sister, Dbs
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.64  E-value=0.018  Score=31.66  Aligned_cols=108  Identities=11%  Similarity=0.123  Sum_probs=64.9

Q ss_pred             CCEEEEEEEEEEECCC---------CCCCCEEEEEEEECCEEEEECCCCCCCCCCCC-EEEEEECCEECCCCCCEEECCC
Q ss_conf             9468998525430388---------88794899999949949998379999989986-1155317478279841222069
Q 005588           17 NTVFKSGPLFISSKGI---------GWKSWKKRWFILTRTSLVFFKNDPSALPQRGG-EVNLTLGGIDLNNSGSVVVRED   86 (689)
Q Consensus        17 ~~V~keG~L~l~kkg~---------~~k~WkkRWfVL~~~~L~yyKd~~~~~p~~~~-~~~~~L~~I~L~~~~sv~~~~~   86 (689)
                      ...+++|.+.+.+.+.         ..+.=+.|||.|=...|+|-|........... .....-+.+.+.........+.
T Consensus        11 G~Ll~qg~~~v~~~~~~~~~~~~~~~~~K~~~R~~FLF~~~Li~cK~~~~~~~~~~~~~~y~~k~~~~~~~~~v~~~~~~   90 (147)
T d1kz7a2          11 GKLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEKAPSYSYKQSLNMTAVGITENVKG   90 (147)
T ss_dssp             CCEEEEEEEEEEECCCCC-----CCCSSSCEEEEEEEESSEEEEEEEECCCCSSCCCSCEEEEEEEEEGGGEEEECCBTT
T ss_pred             CCEEEEEEEEEEECCCCCHHHHHHHHCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCEEEECCCC
T ss_conf             87789604898736765313445553357743899972272899973146776655685489966886377556744799


Q ss_pred             CCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf             851599970788881799993485789999999999984
Q 005588           87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA  125 (689)
Q Consensus        87 Kk~~fvI~~~~~~~r~y~LqAdseeEl~eWI~aIr~al~  125 (689)
                      ..+.|.+.... ....|+|+|.|+++...|+.+|+.++.
T Consensus        91 ~~~~f~~~~~~-~~~~~~l~a~s~eeK~~W~~~I~~~l~  128 (147)
T d1kz7a2          91 DTKKFEIWYNA-REEVYIIQAPTPEIKAAWVNAIRKVLT  128 (147)
T ss_dssp             BTTEEEEEETT-TTEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECC-CCCEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf             86458889679-984799996999999999999999999

>d1fhoa_ b.55.1.1 (A:) UNC-89 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: UNC-89
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.91  E-value=0.045  Score=28.98  Aligned_cols=101  Identities=14%  Similarity=0.132  Sum_probs=55.9

Q ss_pred             CCEEEEEEEEEEECCCCCCCCEEEEEEEECCEEEEECCCCCCC-CCCCCEEEEEECCEECCCCCCEEECCCCCCEEEEEE
Q ss_conf             9468998525430388887948999999499499983799999-899861155317478279841222069851599970
Q 005588           17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSAL-PQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP   95 (689)
Q Consensus        17 ~~V~keG~L~l~kkg~~~k~WkkRWfVL~~~~L~yyKd~~~~~-p~~~~~~~~~L~~I~L~~~~sv~~~~~Kk~~fvI~~   95 (689)
                      ..++..|++.+.. + ..+.+ .||+.|=...|.|.|...... +...     .-+.|.+....-. ........|.+..
T Consensus         8 G~ll~~~~f~v~~-~-~~k~k-~R~vFLF~~~ll~~K~~~~~~~~~y~-----~K~~i~l~~~~v~-e~~gd~~~F~i~~   78 (119)
T d1fhoa_           8 GRIIRHDAFQVWE-G-DEPPK-LRYVFLFRNKIMFTEQDASTSPPSYT-----HYSSIRLDKYNIR-QHTTDEDTIVLQP   78 (119)
T ss_dssp             CCSSEEEEEEECS-T-TCSCE-EEEEEEETTEEEEEEECCSSSSCCCS-----SCCEEESSSCEEE-EECTTCCEEEEEC
T ss_pred             CCEEEEEEEEEEE-C-CCCCE-EEEEEEECCEEEEEEECCCCCCCEEE-----EECEEECCCEEEE-ECCCCCCEEEEEE
T ss_conf             7669980799980-7-98731-89999976859999843689996089-----7068998966989-7689983799985


Q ss_pred             CCCCC----CEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             78888----17999934857899999999999840
Q 005588           96 DGRDG----RAFTLKAETSEDLYEWKTALELALAQ  126 (689)
Q Consensus        96 ~~~~~----r~y~LqAdseeEl~eWI~aIr~al~~  126 (689)
                      ..+..    ..+.++|.++++...|+.+|+..+.+
T Consensus        79 ~~~~~~~~~~~~~~~a~s~~~K~~Wv~~I~e~~~~  113 (119)
T d1fhoa_          79 QEPGLPSFRIKPKDFETSEYVRKAWLRDIAEEQEK  113 (119)
T ss_dssp             CSTTCCCBCCCCCSSSSCSHHHHHHHHHHHTCCHH
T ss_pred             CCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf             89998764499999359979999999999999998

>d2adza1 b.55.1.1 (A:1-43,A:117-178) Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Alpha-1-syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.89  E-value=1.2  Score=19.26  Aligned_cols=96  Identities=16%  Similarity=0.247  Sum_probs=59.3

Q ss_pred             CEEEEEEEEEEEC---CCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEEEECCEECCCCCCEEECCCCCCEEEE-
Q ss_conf             4689985254303---888879489999994994999837999998998611553174782798412220698515999-
Q 005588           18 TVFKSGPLFISSK---GIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL-   93 (689)
Q Consensus        18 ~V~keG~L~l~kk---g~~~k~WkkRWfVL~~~~L~yyKd~~~~~p~~~~~~~~~L~~I~L~~~~sv~~~~~Kk~~fvI-   93 (689)
                      ...|.|.|.+...   |.+...|.+....|....|.+--..        ..-.++|.-+.++-..  ...+.-+.+|.| 
T Consensus         5 ra~rsGlLE~~~~~~~~~~~~rW~rVl~~L~ed~Lt~s~~~--------d~k~IPLKmcyvtR~~--~~~D~EnR~lElh   74 (105)
T d2adza1           5 RAPRTGLLELRCGAGSGAGGERWQRVLLSLAEDALTVSPLS--------EAKHVSLKMAYVSRRC--TPTDPEPRYLEIC   74 (105)
T ss_dssp             CCCEEEEEEECCCCSSSSSCCCCEEEEEEEETTEEEEESSC--------SCEEEETTTCEEEEEC--CSSCCSSCEEEEE
T ss_pred             CCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCEEEEECCC--------CCCEEEEEEEEEEECC--CCCCCCCCEEEEE
T ss_conf             47756228996046777540013530420466458865034--------6536003567764035--5899766589998


Q ss_pred             EECCCCCCEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf             70788881799993485789999999999984
Q 005588           94 FPDGRDGRAFTLKAETSEDLYEWKTALELALA  125 (689)
Q Consensus        94 ~~~~~~~r~y~LqAdseeEl~eWI~aIr~al~  125 (689)
                      .+++  ....+|.|.+..+.+.|+++|...+.
T Consensus        75 SpDG--~~t~iLR~kD~a~A~~WF~Aihs~i~  104 (105)
T d2adza1          75 AADG--QDAVFLRAKDEASARSWAGAIQAQIG  104 (105)
T ss_dssp             ETTT--TEEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred             CCCC--CCEEEEECCCHHHHHHHHHHHHHHHC
T ss_conf             8999--72699986987899999999887604